BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB
[Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040206|gb|ACT57002.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD
Sbjct: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ
Sbjct: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK
Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS
Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM
Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG
Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343


>gi|315122280|ref|YP_004062769.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495682|gb|ADR52281.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 158

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 137/158 (86%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           MKRKKR+QDL +KIS+TLSGLVA++IVKG+LF+TT  G+LISIID  NTPMFDKSSSIPL
Sbjct: 1   MKRKKRMQDLEQKISTTLSGLVANHIVKGILFKTTPNGMLISIIDHNNTPMFDKSSSIPL 60

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           PE I++LQKIGE L+ S E ISI GHTDASPFR+   DNW+LSLDRAYS YQ+LMKSG+S
Sbjct: 61  PEMILILQKIGEALSQSNENISIEGHTDASPFRHSTGDNWKLSLDRAYSTYQILMKSGIS 120

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E RISKISG A H  KI+SDPMN+ANRRI+ILV+D +G
Sbjct: 121 EKRISKISGLAQHNPKISSDPMNAANRRIEILVQDGEG 158


>gi|150395498|ref|YP_001325965.1| flagellar motor protein MotB [Sinorhizobium medicae WSM419]
 gi|150027013|gb|ABR59130.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 397

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 196/401 (48%), Gaps = 71/401 (17%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
           H  KN+     III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++TK 
Sbjct: 7   HNGKNE-----IIIVRRSAGSHEGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEETKA 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG--- 116
           AI  YFNP    +   A KG+ D    P + +Q +       +D   TK+    K G   
Sbjct: 62  AIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEKTQQRSKVDGDQTKSGGSAKSGDQL 117

Query: 117 --STNQKKQYQRL-------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
             ++ ++ +Y                      E NI    +   +E   ++     E  +
Sbjct: 118 TATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAESGPSTGAAGGEAYR 177

Query: 156 D------LCKSTDLEKSIN------------KEENYFLPPLSKEKIL------------- 184
           D        K  +++ + N              E  F+P  +  K L             
Sbjct: 178 DPFDPDFWTKQVEVKDAGNTVESDVAIAANAAAEEKFVPEETSAKALQNQANAEDRTENE 237

Query: 185 --AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
             A  R++  + L  +I   L G  A  +++G++      G+L++I +Q + PMF   S+
Sbjct: 238 AAAEDRQQEAEALKAEIERELGG-EAGRLLEGLVVAPAEGGLLVTISEQTDAPMFAVGSA 296

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
           +P  E ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ 
Sbjct: 297 VPQKELVLAMEKIGRLLAQRPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRG 356

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G+ E+R+ +ISGFA  RL++ +DP   ANRRI+IL++  QG
Sbjct: 357 GLKEERVKQISGFADRRLQVPNDPYAPANRRIEILLQSGQG 397


>gi|163758026|ref|ZP_02165114.1| flagellar motor protein [Hoeflea phototrophica DFL-43]
 gi|162284315|gb|EDQ34598.1| flagellar motor protein [Hoeflea phototrophica DFL-43]
          Length = 411

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 202/409 (49%), Gaps = 84/409 (20%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +Q  ++ II+K++    D  ++ G WKI YADFMT +MAFFLVMW++NA++++TK AI  
Sbjct: 6   HQGKNEIIIVKRRGGGGDDGHHGGVWKIAYADFMTAMMAFFLVMWLVNASNEETKAAIAS 65

Query: 68  YFN--------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL---KIG 116
           YFN        P  K +    K    E   P+  ++       DE  T  + +    K  
Sbjct: 66  YFNPIKLMDDKPADKGIKQVGKSAEGEATAPKSKTEG------DESTTGQAGEAGSQKNS 119

Query: 117 STNQKKQYQR---LENNIFYLSNSQQSEHCKNSLTRDSEKG------------------- 154
           +  +K+ Y      EN    L+   Q    + +++   + G                   
Sbjct: 120 TAGEKQDYSEADYFENPYSVLAEIAQETGTQTNVSDKGDGGAAQSGPATGASGGEAYRDP 179

Query: 155 -------KDLCKSTD-LEKS-----INKEENYFLP--PLSKEKIL--------------- 184
                  K + K +D LE+S     +    N  LP  P+ KE +                
Sbjct: 180 FDPDFWSKSVEKDSDTLEESQSMFEVETFANNRLPESPVDKEPLQDPTDADGPAGDLSAQ 239

Query: 185 --------AMKRKKRLQDLAKK------ISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   A+  ++ L+ LA+       I   L G +   + +G++ E    G+L+SI D
Sbjct: 240 MAGDGGTGALTPEQLLEQLAEADVLKEDIMKALGGALG-KLAEGLVVEPAEGGLLVSITD 298

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           Q +  MF+  S++P  + ++ ++KIGEVLA     I+IRGHTDA PF +   DNWRLSL 
Sbjct: 299 QLDFGMFNVGSAVPGRDLVIAMEKIGEVLAERDGAIAIRGHTDARPFASDTDDNWRLSLA 358

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           RA+SAY +L++ G+SE+RIS++SGFA  RLK   +P++  NRRI+ILVE
Sbjct: 359 RAHSAYYMLVRGGLSEERISQVSGFADRRLKDPDNPLSEVNRRIEILVE 407


>gi|304392497|ref|ZP_07374437.1| chemotaxis protein MotB [Ahrensia sp. R2A130]
 gi|303295127|gb|EFL89487.1| chemotaxis protein MotB [Ahrensia sp. R2A130]
          Length = 364

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 172/358 (48%), Gaps = 28/358 (7%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q III ++  I +  ++ G+WKI +ADFMT +MA FLV+W+INA +++TKK++  YF
Sbjct: 5   DNEQPIIIVRRNRIAEDGHHGGAWKIAFADFMTAMMALFLVLWLINAANEETKKSVASYF 64

Query: 70  NPFG-KNLMTASKGIFDEQNPP----ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           NP    +   + KGI+    P     E +         D+  T        G+   K++ 
Sbjct: 65  NPVKLVDRNRSKKGIWKSAGPSIETGEETEAGTDTQPEDKDSTSGPASSGAGADGSKREA 124

Query: 125 QRLENNIFYLSNSQQSEH-------CKNSLTRDSEKG------------KDLCKSTDLEK 165
           + + +    L     +E            +  D E               +    TD   
Sbjct: 125 EFIADPFSELEEIASAERENMAAKTAAVGMAGDEESDAIRDPFSPVYWKPEPETPTDEIT 184

Query: 166 SINKEENYFLPPLSKEKIL--AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT- 222
            I  EE    P ++ E        R++     A  +   L   VA  +  G   + T T 
Sbjct: 185 PIRAEEEKPQPEITSEVSADDEAAREETDDAGASDVLKELKAAVAKAVDDGPRLDVTPTP 244

Query: 223 -GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G+LISI D  +  MF+  SS+P    ++ +  + +VL+     + I GHTDA PFR   
Sbjct: 245 DGLLISITDDFDFAMFETGSSVPSGRLVLAMDAVAQVLSERPGKLHIHGHTDARPFRGGE 304

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           RDNW LS  RA+SA  +L++ G  E RI +ISGFA  RLK+  +P  ++NRRI++L+E
Sbjct: 305 RDNWTLSSARAHSARYMLLRGGFGEKRIVEISGFADRRLKLVDEPDAASNRRIELLLE 362


>gi|121602153|ref|YP_989388.1| putative flagellar motor protein MotB [Bartonella bacilliformis
           KC583]
 gi|120614330|gb|ABM44931.1| putative flagellar motor protein MotB [Bartonella bacilliformis
           KC583]
          Length = 357

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 180/360 (50%), Gaps = 43/360 (11%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MA FLVMW++NA D++ K  I  YFNP 
Sbjct: 11  EIIIVRRGGHDDHDDHHGGVWKIAYADFMTAMMALFLVMWLVNAKDEEEKAVIANYFNPI 70

Query: 73  G-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLEN 129
              +  T  +G+  +QN  E ++   +D +  E     +  L +    +  +  Y  LE 
Sbjct: 71  KLVDHETTIRGV--KQNDAEDNNTPSVDPTRREEAQSENGQLNLTEEAELMRDPYTGLEK 128

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE-----NYFLP-------- 176
            +            K ++   S+K  +   S + E   ++E      +Y+ P        
Sbjct: 129 IV----------DAKRTMQDQSDKNAENSTSMEQENGDSRENSKVGIDYYDPFSLNYWKQ 178

Query: 177 -----------PLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
                      PL+ +K+       +   D AK+++  +   V D+ V  V  E  + G+
Sbjct: 179 AASDALVKAETPLAFQKLAQENFPSQESIDFAKELTEFMKETVNDHHV-SVYVEPIKEGV 237

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD 283
           +I ++DQ    MF   SS+P  ET+ V+ ++ +++A H  +VI I GHTD+ P+R+  RD
Sbjct: 238 IIELMDQPQREMFRVGSSLPTAETVEVIGEMAKIIAKHQGDVI-ISGHTDSRPYRSANRD 296

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           NW+LS  RA  AY +L++ G+ E RI ++ G+A   LK  +DP  + NRRI I + +  G
Sbjct: 297 NWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKADPYAAENRRISIFIRNPNG 356


>gi|306841271|ref|ZP_07473982.1| flagellar motor protein MotB [Brucella sp. BO2]
 gi|306845424|ref|ZP_07477998.1| flagellar motor protein MotB [Brucella sp. BO1]
 gi|306274167|gb|EFM55983.1| flagellar motor protein MotB [Brucella sp. BO1]
 gi|306288673|gb|EFM60004.1| flagellar motor protein MotB [Brucella sp. BO2]
          Length = 366

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              LM   ++ KG+   +N  +R    K+    D+ + +NS  + +  T  +    + E 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120

Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173
            +F    +  +E  H    L   S KG      +      +  E Y              
Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180

Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219
               PP    + +   L   + K+ +   +L   +    +G  A N  K    E      
Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240

Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA P
Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARP 300

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           F++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI
Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360

Query: 337 LVEDR 341
            ++ +
Sbjct: 361 FIKSK 365


>gi|319898651|ref|YP_004158744.1| flagellar motor protein MotB [Bartonella clarridgeiae 73]
 gi|319402615|emb|CBI76160.1| putative flagellar motor protein MotB [Bartonella clarridgeiae 73]
          Length = 384

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 182/360 (50%), Gaps = 37/360 (10%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           D  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD TK+AI
Sbjct: 4   DDQQSSSEIIIVRRGGHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDATKEAI 63

Query: 66  EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             YFNP    +  T+++GI  + N  E+  ++ +D    +       D +   +N  ++ 
Sbjct: 64  ANYFNPIKLVDPQTSNRGI--QHNDIEQDKKSSLDQECKD-------DAQSEKSNAMEEA 114

Query: 125 QRLENNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLP--PLSK 180
           + + +    L    QSE + +N   +  E+G  + +   D +K++     Y  P  P   
Sbjct: 115 ELMRDPYLGLKKIVQSERNAQNPAEQQFEQGNLVGQGAGDSQKNLQLGTEYHDPFSPYYW 174

Query: 181 EKILAMKRKKRLQD--------------------LAKKISSTLSGLVADNIVKGVLFETT 220
            + +A  +K+++Q                     L K+++  + G   +NI+  V  +  
Sbjct: 175 SENVASSQKRKIQKQKMMAKESEQENNSSENSHALLKELTDLIEGET-NNILAHV--KPI 231

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           + G++I ++DQ    MF    SIP  +TI ++  +  ++A     + I GHTDA P+R+ 
Sbjct: 232 KEGVMIELMDQPKYEMFKVGLSIPTAQTIDLISSMAGIIAKHQGDVVISGHTDARPYRSN 291

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             DNW+LS  RA  AY +L++ G+ E RI ++ G+A   LK   DP  + NRRI I + D
Sbjct: 292 VYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351


>gi|306840141|ref|ZP_07472926.1| flagellar motor protein MotB [Brucella sp. NF 2653]
 gi|306404786|gb|EFM61080.1| flagellar motor protein MotB [Brucella sp. NF 2653]
          Length = 366

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              LM   ++ KG+   +N  +R    K+    D+ + +NS  + +  T  +    + E 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120

Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173
            +F    +  +E  H    L   S KG      +      +  E Y              
Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180

Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219
               PP    + +   L   + K+ +   +L   +    +G  A N  K    E      
Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240

Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA P
Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARP 300

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           F++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI
Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360

Query: 337 LVEDR 341
            ++ +
Sbjct: 361 FIKSK 365


>gi|254720768|ref|ZP_05182579.1| flagellar motor protein MotB [Brucella sp. 83/13]
 gi|265985826|ref|ZP_06098561.1| flagellar motor protein MotB [Brucella sp. 83/13]
 gi|264664418|gb|EEZ34679.1| flagellar motor protein MotB [Brucella sp. 83/13]
          Length = 366

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              LM   ++ KG+   +N  +R    K+    D+ + +NS  + +  T  +    + E 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120

Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173
            +F    +  +E  H    L   S KG      +      +  E Y              
Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSVKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180

Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219
               PP    + +   L   + K+ +   +L   +    +G  A N  K    E      
Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240

Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA P
Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARP 300

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           F++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI
Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360

Query: 337 LVEDR 341
            ++ +
Sbjct: 361 FIKSK 365


>gi|294852974|ref|ZP_06793646.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
 gi|294818629|gb|EFG35629.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
          Length = 366

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 51/368 (13%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TK--NSVDLKIGSTNQKKQY 124
              LM   ++ KG+   +N  +R    K+    D+ +   TK  N   ++  S  +K+Q 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEKRQL 122

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY----------- 173
            R    +       +  H    L   S KG      +      +  E Y           
Sbjct: 123 FREPYAML-----AELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSS 177

Query: 174 -----FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET-- 219
                  PP    + +   L   + K+ +   +L   +    +G  A N  K    E   
Sbjct: 178 KAVGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMP 237

Query: 220 ------TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
                    G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTD
Sbjct: 238 DVTVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTD 297

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           A PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRR
Sbjct: 298 ARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRR 357

Query: 334 IDILVEDR 341
           IDI ++ +
Sbjct: 358 IDIFIKSK 365


>gi|161621187|ref|YP_001595073.1| flagellar motor protein MotB [Brucella canis ATCC 23365]
 gi|254702390|ref|ZP_05164218.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
 gi|260568709|ref|ZP_05839178.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261752951|ref|ZP_05996660.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
 gi|161337998|gb|ABX64302.1| Protein mbhA [Brucella canis ATCC 23365]
 gi|260155374|gb|EEW90455.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261742704|gb|EEY30630.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
          Length = 366

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 171/366 (46%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   +N  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRID
Sbjct: 300 PFKSATYDNWRLSSTRAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|23500858|ref|NP_700298.1| flagellar motor protein MotB [Brucella suis 1330]
 gi|163845462|ref|YP_001623117.1| flagellar motor protein MotB [Brucella suis ATCC 23445]
 gi|225628433|ref|ZP_03786467.1| Protein mbhA [Brucella ceti str. Cudo]
 gi|254711223|ref|ZP_05173034.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|254711824|ref|ZP_05173635.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|254714893|ref|ZP_05176704.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|256015903|ref|YP_003105912.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|256030148|ref|ZP_05443762.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
 gi|256059799|ref|ZP_05449994.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|256158327|ref|ZP_05456231.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|256252739|ref|ZP_05458275.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|260166800|ref|ZP_05753611.1| flagellar motor protein MotB [Brucella sp. F5/99]
 gi|261216582|ref|ZP_05930863.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|261219818|ref|ZP_05934099.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|261318815|ref|ZP_05958012.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|261319452|ref|ZP_05958649.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|261323779|ref|ZP_05962976.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|261756178|ref|ZP_05999887.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|265987178|ref|ZP_06099735.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
 gi|265996841|ref|ZP_06109398.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|23464523|gb|AAN34303.1| chemotaxis motB protein [Brucella suis 1330]
 gi|163676185|gb|ABY40295.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|225616279|gb|EEH13327.1| Protein mbhA [Brucella ceti str. Cudo]
 gi|255998563|gb|ACU50250.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260918402|gb|EEX85055.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|260921671|gb|EEX88239.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|261292142|gb|EEX95638.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|261298038|gb|EEY01535.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|261299759|gb|EEY03256.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|261736162|gb|EEY24158.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|262551138|gb|EEZ07299.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|264659375|gb|EEZ29636.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
          Length = 366

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 171/366 (46%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   +N  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRID
Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|319405416|emb|CBI79035.1| putative flagellar motor protein MotB [Bartonella sp. AR 15-3]
          Length = 384

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 178/360 (49%), Gaps = 37/360 (10%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           D  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+ K+AI
Sbjct: 4   DDQQSSSEIIIVRRGRHDDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKEAI 63

Query: 66  EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             YFNP    +  T+++GI  +QN  E+  ++ +D    EH      D +    N  ++ 
Sbjct: 64  ANYFNPIKLVDPQTSNRGI--QQNDIEQDKKSSLD---QEH----RDDAQSEKLNTTEEA 114

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK--STDLEKSIN---KEENYFLPPLS 179
           + + N    L    QSE+   +      K  DL    + D ++++    +  + F P   
Sbjct: 115 ELMLNPYPGLEKIVQSEYSAQNSAEQQFKQGDLVGQGAGDTQENLQLGTEHHDPFSPYYW 174

Query: 180 KEKI-LAMKRKKRLQD------------------LAKKISSTLSGLVADNIVKGVLFETT 220
           KE I  + KRK + Q                   LAK ++  +    +D +V     +  
Sbjct: 175 KENIDSSQKRKNQKQKTLVKETTQENNFSENSRALAKDLTDLIEETNSDILVH---VKPI 231

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           + G++I ++DQ    MF    S+P   TI ++  +  ++A     I I GHTDA P+R+ 
Sbjct: 232 KEGVMIELMDQPKYEMFKVGLSVPTARTIDLIASMAGIIAKHQGDIVISGHTDARPYRST 291

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             DNW+LS  RA  AY +L++ G+ E RI ++ G+A   LK   DP  + NRRI I + D
Sbjct: 292 VYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351


>gi|153011513|ref|YP_001372727.1| flagellar motor protein MotB [Ochrobactrum anthropi ATCC 49188]
 gi|151563401|gb|ABS16898.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 371

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 169/367 (46%), Gaps = 50/367 (13%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQN--------------------------PPERSSQNKI----- 98
              LM   ++SKG+ D +                           PP    + ++     
Sbjct: 70  --KLMDRHSSSKGVQDVEEKDGKVRYESDQKIENSTKVINDTTVAPPSDQEERQLFREPY 127

Query: 99  ----DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY---LSNSQQSEHCKNSLTRDS 151
               +L+ +  + +N      G T+Q       E    Y    S    S    + LT   
Sbjct: 128 AVLSELAHETGVLQNQSAKGDGGTSQSGPATGAEGGEAYRDPFSPDYWSSKAVDDLTPPD 187

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
                       E +  K E    P  ++E+++A  +K    + AK+ +           
Sbjct: 188 AA---PAAPPKPETAQPKPEETAKPAETQEQLIADLKKAAEGEAAKEGAEAKKA----EP 240

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +  V       G++I + D+ +  MF   S+ P    + +L++I +V++     + I GH
Sbjct: 241 MPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQPGEVIISGH 300

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TDA PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K ASDP  + N
Sbjct: 301 TDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNASDPNAAEN 360

Query: 332 RRIDILV 338
           RRIDI +
Sbjct: 361 RRIDIFL 367


>gi|17988498|ref|NP_541131.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. 16M]
 gi|256042871|ref|ZP_05445817.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564108|ref|ZP_05834593.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265989306|ref|ZP_06101863.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984289|gb|AAL53395.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151751|gb|EEW86844.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262999975|gb|EEZ12665.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
          Length = 366

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 43/364 (11%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GK-NLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLE 128
              +  ++ KG+   QN  +R    K+    D+ +   TK   D  +   + +++ Q   
Sbjct: 70  KLIDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFR 124

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--------------- 173
                L+   +  H    L   S KG      +      +  E Y               
Sbjct: 125 EPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181

Query: 174 -FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET------ 219
              PP    + +   L   + K+ +   +L   +    +G  A N  K    E       
Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTV 241

Query: 220 --TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF
Sbjct: 242 VPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPF 301

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI 
Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIF 361

Query: 338 VEDR 341
           ++ +
Sbjct: 362 IKSK 365


>gi|222084880|ref|YP_002543409.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
 gi|221722328|gb|ACM25484.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
          Length = 452

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +++  ++L + I + +SG VA  + +GV   +   G+L++I DQ N PMF+  S++P  E
Sbjct: 271 QQQSAKELQQAIQAEISG-VAGQLAEGVQVASAEGGLLVTISDQSNDPMFNIGSAVPRRE 329

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306
            ++ + KIG++LA+   VI IRGHTD  P+      DNWRLSLDRA SAY +L  +G+ E
Sbjct: 330 MVLAMGKIGKILANRKGVILIRGHTDGRPYMVGGHNDNWRLSLDRAQSAYYMLTSTGLDE 389

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            RI ++SGFA  RLK+ +DP N ANRRI+IL+ED
Sbjct: 390 KRIEQVSGFADRRLKLPNDPFNDANRRIEILIED 423



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%)

Query: 5  GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
          GD+NQ   + II+K+  A +    + G+WKI YADFMT +MAFFLVMW++NA +++TK +
Sbjct: 4  GDQNQGKHEIIIVKRHGANEHEGGHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETKAS 63

Query: 65 IEQYFNPF 72
          +  YFNP 
Sbjct: 64 VASYFNPI 71


>gi|256112172|ref|ZP_05453093.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
 gi|265993598|ref|ZP_06106155.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
 gi|262764468|gb|EEZ10500.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
          Length = 366

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 170/366 (46%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   QN  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSSSGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRID
Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|254695098|ref|ZP_05156926.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
 gi|261215449|ref|ZP_05929730.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
 gi|260917056|gb|EEX83917.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
          Length = 366

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 169/366 (46%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   QN  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRID
Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|319406989|emb|CBI80626.1| putative flagellar motor protein MotB [Bartonella sp. 1-1C]
          Length = 384

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 178/357 (49%), Gaps = 37/357 (10%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+ K+AI  Y
Sbjct: 7   QSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKEAIANY 66

Query: 69  FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    +  T+++GI  +    E+  ++ +D        +   D +   +N  ++ + +
Sbjct: 67  FNPIKLVDPQTSNRGI--QHKDIEQDKKSSLD-------QERRDDDQSEKSNPMEEAELM 117

Query: 128 ENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSINKEENY---FLPPLSKEK 182
            N    L    QSEH  KN   +  EKG  L +   D ++++     Y   F P   +E 
Sbjct: 118 HNPYLGLEKIVQSEHHAKNPSEQQFEKGDLLGQGVGDSQENLQLGIEYHDPFSPDYWREN 177

Query: 183 ILAMKRKK----------RLQD---------LAKKISSTLSGLVADNIVKGVLFETTRTG 223
           I + +++K           +Q+         LAK+++  +    +D +      +  + G
Sbjct: 178 IDSFQKRKDQKQKTLVKESIQENNSSENSRVLAKELTDLIEAKNSDILAH---VKPIKEG 234

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
           ++I ++DQ    MF    S+P   T+ ++  +  ++A     + I GHTDA P+R+   D
Sbjct: 235 VMIELMDQPKYEMFKVGLSVPTARTVDLISSMAGIIAKYQGDVVISGHTDARPYRSTVYD 294

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           NW+LS  RA  AY +L++ G  E RI ++ G+A   LK   +P  + NRRI I + D
Sbjct: 295 NWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKNPYAAENRRISIFIRD 351


>gi|325291956|ref|YP_004277820.1| flagellar motor protein MotB [Agrobacterium sp. H13-3]
 gi|27763656|gb|AAO20254.1| MotB [Agrobacterium sp. H13-3]
 gi|325059809|gb|ADY63500.1| flagellar motor protein MotB [Agrobacterium sp. H13-3]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +K+  ++L ++I   +SG ++  + +G++      G+L++I DQ  TPMF+  S++P  E
Sbjct: 274 QKEEAKELREEIEKQISG-ISGKLAEGLVVTPAEGGLLLTISDQTETPMFNVGSAVPRGE 332

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            ++ ++KIG++L      + IRGHTD   F+  A DNWRLS+DRA+SAY +L++ G+SE+
Sbjct: 333 MVLAMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEE 392

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           R+ ++SGFA  RL++ +DP+ +ANRRI+IL+E  +G
Sbjct: 393 RVKQVSGFADRRLQVPADPLANANRRIEILLEADRG 428



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S G+ +      III K+        + G+WKI YADFMT +MAFFLVMW++NA +++TK
Sbjct: 2   SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61

Query: 63  KAIEQYFNPFG-KNLMTASKGI---FDEQNPPERSSQNKIDLSIDEHITKNSV 111
            ++  YFNP    +   +SKG+    D++   E+  Q+ I     E +T+ S 
Sbjct: 62  ASVASYFNPIKLSDEKPSSKGLEKPVDKEEGVEKKDQSNIKA---EKVTQGSA 111


>gi|319409174|emb|CBI82818.1| putative flagellar motor protein MotB [Bartonella schoenbuchensis
           R1]
          Length = 396

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 174/369 (47%), Gaps = 49/369 (13%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q + + II+++    D   ++ G+WKI YADF+T +MAFFLVMW++NA D++T++AI  Y
Sbjct: 7   QSHSEIIIVRRGGHDDHDEHHGGAWKIAYADFVTAMMAFFLVMWLVNAKDEETREAIANY 66

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           FNP           + D Q    RS Q K D+  D+ I          S ++  Q   LE
Sbjct: 67  FNPI---------KLTDSQT-SSRSIQKKNDVE-DDKICPVGQTCGGDSKSENVQLVSLE 115

Query: 129 ---------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFL 175
                    + +  +  SQQ+     SL     K + L  ++  +      +    + F 
Sbjct: 116 ETELMRDPYSGLDKIVQSQQNVQNMQSLPDSDGKHETLMGNSKGDSKENLPVTDYRDPFS 175

Query: 176 PPLSKEKI-----------LAMKRKKRLQDLAK-----KISSTLSGLVADNIVKGVLFET 219
           P   KE +           +  K  +  Q LA+     + S   +  +AD ++K +  E 
Sbjct: 176 PHYWKENVASHNNTLNAQGIEWKEGQAQQQLAQEDAPSQESRDFAKELAD-LIKEITDEN 234

Query: 220 TRTGILISI--------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
             +  ++ I        +DQ    MF   SS+P  +T+  + +I +V+A     + + GH
Sbjct: 235 HLSASVLPIREGVMIELMDQPEYEMFKVGSSVPTAQTVEFIDRIAKVIAKHPGNVVVGGH 294

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TDA P+R+  RDNW+LS  RA   Y +L++ G+ E RI ++ G+A   LK   DP  S N
Sbjct: 295 TDARPYRSTTRDNWQLSTSRAQMVYYMLVRGGLDEKRILRVEGYADRNLKNKQDPYASEN 354

Query: 332 RRIDILVED 340
           RR  I V D
Sbjct: 355 RRTSIFVRD 363


>gi|225686890|ref|YP_002734862.1| flagellar motor protein MotB [Brucella melitensis ATCC 23457]
 gi|256261973|ref|ZP_05464505.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642995|gb|ACO02908.1| Protein mbhA [Brucella melitensis ATCC 23457]
 gi|263091457|gb|EEZ15993.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326411308|gb|ADZ68372.1| flagellar motor protein MotB [Brucella melitensis M28]
 gi|326554597|gb|ADZ89236.1| flagellar motor protein MotB [Brucella melitensis M5-90]
          Length = 366

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 169/366 (46%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVVSYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   QN  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +     G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAAIGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRID
Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|312115287|ref|YP_004012883.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220416|gb|ADP71784.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 358

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 174/359 (48%), Gaps = 30/359 (8%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KN+     I+++KK+   D  N+ G WKI YADFMT +M FFLVMW++N++  +    I 
Sbjct: 6   KNERAHADIVVRKKLYRSDGDNHGGVWKIAYADFMTAMMTFFLVMWLVNSSSKERLSQIA 65

Query: 67  QYFNPF--------GKNLMTASKGIFDEQNPPERSSQNKID-----LSIDEHITKNSVDL 113
            YFNP          K++   +    D+     R +   +D     +  +E +T+N   +
Sbjct: 66  NYFNPVKLNEHAPPAKDVAATAPKAQDKSPAAGRPNSAVVDPKDRHVFSEEELTRNPFGV 125

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEE- 171
                 Q ++  R+       S  Q S      L+RD    +  L ++  +  S   +  
Sbjct: 126 LTQLATQAEEALRIA------SKEQDSSAAAGQLSRDPFVAEPRLVRTAKVSTSSGSQTA 179

Query: 172 --NYFLPPLSKEK--ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--- 224
              +   P S +   +   +RK+    LA++I   +    + N+ +    + +  G+   
Sbjct: 180 PGEWSDAPKSHKSANVAETERKEPAASLAEQILKDIESFQS-NLPQSFRVQVSVAGVAEG 238

Query: 225 -LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
            LIS++D     MFD  S++P P+T++V+ +IG++++     I IRG+TD  PF      
Sbjct: 239 TLISLMDDTKRSMFDVGSAMPKPDTVLVMTRIGDIISKYPGKIIIRGYTDGRPFAGDRYG 298

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           NW LS  RA  A+ +L +  + + R+  I G+A  + + A DP+   NRRI++L++D +
Sbjct: 299 NWVLSSQRARMAFLMLARGKIGDGRVLSIEGYADRQPRNADDPLAPENRRIEVLLKDSE 357


>gi|319403973|emb|CBI77561.1| putative flagellar motor protein MotB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 384

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 37/357 (10%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+TK+AI  Y
Sbjct: 7   QSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDETKEAIANY 66

Query: 69  FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    +  T+++GI  +    E+  ++ +D        +   D +   +N  ++ + +
Sbjct: 67  FNPIKLVDPQTSNRGI--QHKDIEQDKKSSLD-------QERRDDDQSEKSNAMEEAELM 117

Query: 128 ENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSIN---KEENYFLPPLSKEK 182
            N    L    QSEH  KN   +  EKG  + +   D ++++    +  + F P   +E 
Sbjct: 118 HNPYPGLEKIVQSEHHAKNPSEQQFEKGDLVGQGVGDSQENLQLGTEHHDPFSPHYWREN 177

Query: 183 I-LAMKRKKRLQD------------------LAKKISSTLSGLVADNIVKGVLFETTRTG 223
           I  + KRK + Q                   LA++++  + G  + NI+  V  +  + G
Sbjct: 178 IDFSQKRKDQKQKTLVKESIQENNSSENSRALAQELTDFIEGENS-NILAHV--KPIKEG 234

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
           ++I ++DQ    MF    S+P   TI ++  +  ++A     + I GHTDA  +R+   D
Sbjct: 235 VMIELMDQPKYEMFKVGLSVPTARTIDLISSMAGIIAKYQGDVVISGHTDARAYRSAVYD 294

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           NW+LS  RA  AY +L++ G  E RI ++ G+A   LK   DP  + NRRI I + D
Sbjct: 295 NWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351


>gi|315122279|ref|YP_004062768.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495681|gb|ADR52280.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 126

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 87/122 (71%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   D +Q+ +QFI IKKKV +D     LGSWKIVYADFMT LM+FFLVMWI+NATDD+
Sbjct: 1   MNYQKDNDQKKNQFIFIKKKVVVDLEKKKLGSWKIVYADFMTALMSFFLVMWIVNATDDN 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TKK IE YFNPFG NL+ ASKGIF++ N P    +N I+  ID+  T N+ +LK     +
Sbjct: 61  TKKVIENYFNPFGPNLLMASKGIFEKNNSPNNFPKNSINQPIDKKTTNNNFNLKDSIARK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>gi|239834431|ref|ZP_04682759.1| Protein mbhA [Ochrobactrum intermedium LMG 3301]
 gi|239822494|gb|EEQ94063.1| Protein mbhA [Ochrobactrum intermedium LMG 3301]
          Length = 379

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 169/376 (44%), Gaps = 60/376 (15%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+ D +         K+    D+ I   TK   D  +   +++++ Q 
Sbjct: 70  --KLMDRHSSPKGVQDVEE-----KDGKVRYESDQKIENSTKVINDTTVAPPSEQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY---FLPPLSKEKI 183
                  LS   +  H    L   S KG      +      +  E Y   F P     K 
Sbjct: 123 FREPYAVLS---ELAHETGVLQNQSAKGDGGTSKSGPATGADGGEAYRDPFSPDYWSSKA 179

Query: 184 L-------------------------------------AMKRKKRLQDLAKKISSTLS-- 204
           +                                     A K+++ + DL K      +  
Sbjct: 180 VEDLTPPDAAPATPPRPEAAQPKPEEAAKPAEAPADTPAEKQEQLIADLKKAAEGETAKE 239

Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           G  A     +  V       G++I + D+ +  MF   S+ P    + +L++I +V++  
Sbjct: 240 GTAAKKAEPMPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQ 299

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTDA PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K 
Sbjct: 300 PGEVIISGHTDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKN 359

Query: 323 ASDPMNSANRRIDILV 338
           A+DP  + NRRIDI +
Sbjct: 360 ANDPNAAENRRIDIFL 375


>gi|116250495|ref|YP_766333.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255143|emb|CAK06217.1| putative motility protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 443

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 93/139 (66%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E ++ ++KIG +L     
Sbjct: 305 GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKERGG 364

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ S
Sbjct: 365 AVAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 424

Query: 325 DPMNSANRRIDILVEDRQG 343
           DP N+ NRRI+ILV+  QG
Sbjct: 425 DPFNATNRRIEILVQADQG 443



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  KN+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGKNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K ++  YFNP 
Sbjct: 62 KASVATYFNPI 72


>gi|62317962|ref|YP_223815.1| flagellar motor protein MotB [Brucella abortus bv. 1 str. 9-941]
 gi|83269939|ref|YP_419230.1| flagellar motor protein MotB [Brucella melitensis biovar Abortus
           2308]
 gi|189023213|ref|YP_001932954.1| flagellar motor protein MotB [Brucella abortus S19]
 gi|237817509|ref|ZP_04596499.1| Protein mbhA [Brucella abortus str. 2308 A]
 gi|254691605|ref|ZP_05154859.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|254698194|ref|ZP_05160022.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731639|ref|ZP_05190217.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|256256793|ref|ZP_05462329.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|260544147|ref|ZP_05819968.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260757237|ref|ZP_05869585.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|260759398|ref|ZP_05871746.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|260762641|ref|ZP_05874973.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883041|ref|ZP_05894655.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|297250146|ref|ZP_06933847.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|62198155|gb|AAX76454.1| MotB, chemotaxis protein [Brucella abortus bv. 1 str. 9-941]
 gi|82940213|emb|CAJ13269.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308]
 gi|189021787|gb|ACD74508.1| OmpA/MotB domain protein [Brucella abortus S19]
 gi|237787264|gb|EEP61482.1| Protein mbhA [Brucella abortus str. 2308 A]
 gi|260097418|gb|EEW81292.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260669716|gb|EEX56656.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|260673062|gb|EEX59883.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677345|gb|EEX64166.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|260872569|gb|EEX79638.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|297174015|gb|EFH33379.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
          Length = 366

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 47/366 (12%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASYFNPV 69

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   QN  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 70  --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DN RLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRID
Sbjct: 300 PFKSATYDNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRID 359

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 360 IFIKSK 365


>gi|209547941|ref|YP_002279858.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533697|gb|ACI53632.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 447

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 93/139 (66%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G +A  + +G+    +  G+L+SI DQ +  MFD  S++P  E ++ ++KIG +L     
Sbjct: 309 GGIAGKLAEGLTVTASEGGLLVSISDQSDDSMFDIGSAVPRQEMVLAMEKIGAILKERGG 368

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ S
Sbjct: 369 AVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 428

Query: 325 DPMNSANRRIDILVEDRQG 343
           DP N+ NRRI+ILV+  +G
Sbjct: 429 DPFNATNRRIEILVQADRG 447



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  KN+     II+K+    D   ++ G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGKNE----IIIVKRHGGGDHDGSHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K ++  YFNP 
Sbjct: 62 KASVATYFNPI 72


>gi|15887914|ref|NP_353595.1| flagellar motor protein MotB [Agrobacterium tumefaciens str. C58]
 gi|15155508|gb|AAK86380.1| flagellar motor protein, PAL/OmpA family [Agrobacterium tumefaciens
           str. C58]
          Length = 433

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L ++I   +SG+    + +G++      G+L++I DQ  TPMF+  S++P  E ++ ++K
Sbjct: 286 LREEIEKQISGITG-KLSEGLVVTPAEGGLLLTISDQAETPMFNIGSAVPRGELVLAMEK 344

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           IG++L      + IRGHTD   F+  A DNWRLS+DRA+SAY +L++ G+SE+R+ ++SG
Sbjct: 345 IGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEERVKQVSG 404

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQG 343
           FA  RL++ S+P+  ANRRI+IL+E  +G
Sbjct: 405 FADRRLQVPSNPLADANRRIEILLEADRG 433



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query: 3  SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
          S G+ +      III K+        + G+WKI YADFMT +MAFFLVMW++NA +++TK
Sbjct: 2  SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61

Query: 63 KAIEQYFNPF 72
           ++  YFNP 
Sbjct: 62 ASVASYFNPI 71


>gi|241203119|ref|YP_002974215.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857009|gb|ACS54676.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 443

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 93/139 (66%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E ++ ++KIG +L     
Sbjct: 305 GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKERGG 364

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +++RGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ S
Sbjct: 365 AVAVRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 424

Query: 325 DPMNSANRRIDILVEDRQG 343
           DP N+ NRRI+ILV+  QG
Sbjct: 425 DPFNATNRRIEILVQADQG 443



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  KN+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGKNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K ++  YFNP 
Sbjct: 62 KASVATYFNPI 72


>gi|218675467|ref|ZP_03525136.1| flagellar motor protein MotB [Rhizobium etli GR56]
          Length = 436

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 100/153 (65%), Gaps = 1/153 (0%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           ++KK    L  +I+  + G VA  + +G+       G+L+SI DQ +  MF+  S++P  
Sbjct: 283 QQKKEADALQAQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQ 341

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E
Sbjct: 342 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDE 401

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            RIS++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 402 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 434



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K A+  YFNP 
Sbjct: 62 KAAVATYFNPI 72


>gi|222147584|ref|YP_002548541.1| flagellar motor protein MotB [Agrobacterium vitis S4]
 gi|221734572|gb|ACM35535.1| flagellar motor protein [Agrobacterium vitis S4]
          Length = 444

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L ++I+S + G VA  + +G++ +    G+LI++ DQ   PMFD  S++P  E ++ ++K
Sbjct: 297 LKQQIASEIGG-VAGKLAEGLIVQPAEGGLLITLTDQSQAPMFDVGSAVPRKEMVLAMEK 355

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           IG++LA     + IRGHTDA  ++    DNW LS+ RA+SAY +L++ G++++RI+++SG
Sbjct: 356 IGKLLAERQGAVVIRGHTDARQYKGPDNDNWGLSMSRAHSAYYMLVRGGLAQNRITQVSG 415

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342
           FA  RL    DP+ +ANRRI+ILV+  Q
Sbjct: 416 FADRRLLKPEDPLAAANRRIEILVQGDQ 443



 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  KN+     I+IK+    D    + G+WKI YADFMT +MAFFLVMW++NA ++ T
Sbjct: 6  NHHHGKNE----IIVIKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEKT 61

Query: 62 KKAIEQYFNPF 72
            ++  YFNP 
Sbjct: 62 TASVASYFNPI 72


>gi|82940569|emb|CAJ44300.1| putative Chemotaxis Motility protein B (MotB) [Rhizobium
           leguminosarum bv. viciae]
          Length = 146

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 93/139 (66%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E ++ ++KIG +L     
Sbjct: 8   GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKARGG 67

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            I+IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ S
Sbjct: 68  AIAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 127

Query: 325 DPMNSANRRIDILVEDRQG 343
           DP N+ NRRI+ILV+  QG
Sbjct: 128 DPFNATNRRIEILVQADQG 146


>gi|86356325|ref|YP_468217.1| flagellar motor protein MotB [Rhizobium etli CFN 42]
 gi|86280427|gb|ABC89490.1| chemotaxis motility protein [Rhizobium etli CFN 42]
          Length = 436

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 92/135 (68%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G VA  + +G+       G+L+SI DQ +  MF+  S++P  E ++ ++KIG +L     
Sbjct: 300 GGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMEKIGTILKERGG 359

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G++E R+S++SGFA  RLK+ +
Sbjct: 360 AVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLNETRVSQVSGFADRRLKLPA 419

Query: 325 DPMNSANRRIDILVE 339
           DP N+ANRRI+ILV+
Sbjct: 420 DPFNAANRRIEILVQ 434



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K A+  YFNP 
Sbjct: 62 KAAVATYFNPI 72


>gi|227820870|ref|YP_002824840.1| flagellar motor protein MotB [Sinorhizobium fredii NGR234]
 gi|227339869|gb|ACP24087.1| chemotaxis protein motility protein B [Sinorhizobium fredii NGR234]
          Length = 392

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 95/139 (68%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G  A  +++G++   +  G+L++I +Q + PMF   S++P  + ++ ++KIG +LA    
Sbjct: 254 GGEAGRLLEGLVVTPSEGGLLVTISEQTDAPMFAVGSAVPAKDLVLAMEKIGTLLAERQG 313

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            ++IRGHTD  PF++   DNWRLS  RA SAY +L++ G+ E R+++ISGFA  RL++ +
Sbjct: 314 AVAIRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLKEQRVNQISGFADRRLQVPN 373

Query: 325 DPMNSANRRIDILVEDRQG 343
           DP  +ANRRI+IL++  QG
Sbjct: 374 DPYAAANRRIEILLQSGQG 392



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 4  HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          H  KN+     III K+       ++ G WKI YADFMT +MAFFLVMW+INA +++TK 
Sbjct: 7  HNGKNE-----IIIVKRSGDGHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEETKA 61

Query: 64 AIEQYFNP 71
          AI  YFNP
Sbjct: 62 AIASYFNP 69


>gi|327193053|gb|EGE59965.1| chemotaxis motility protein [Rhizobium etli CNPAF512]
          Length = 440

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 101/153 (66%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +R+K+  D  ++  +   G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  
Sbjct: 286 ERQKKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQ 345

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E
Sbjct: 346 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDE 405

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            RIS++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 406 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 438



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K A+  YFNP 
Sbjct: 62 KAAVATYFNPI 72


>gi|218509333|ref|ZP_03507211.1| flagellar motor protein MotB [Rhizobium etli Brasil 5]
          Length = 228

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 91/133 (68%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E ++ +++IG +L      +
Sbjct: 94  VAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMERIGTILKERGGAV 153

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           ++RGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ +DP
Sbjct: 154 AVRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPADP 213

Query: 327 MNSANRRIDILVE 339
            N+ANRRI+ILV+
Sbjct: 214 FNAANRRIEILVQ 226


>gi|190890377|ref|YP_001976919.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
 gi|190695656|gb|ACE89741.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
          Length = 440

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 25/281 (8%)

Query: 66  EQYFNPFGKN-------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           E Y +PF  +       + TA K +     PP +S++   + +  E      +     +T
Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKAL-----PPGKSAEQATEGAATEVAKAEDMKPVPLAT 230

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           +QK              ++++S+  K +   +++ GK        EK +  E+N      
Sbjct: 231 DQKP-----------AKDAKESKETKGAP--ETKGGKTTDGKAPDEKKVEAEKNADHQKD 277

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           + +     +R+K   D  ++  +   G VA  + +G+    +  G+L+SI DQ +  MF+
Sbjct: 278 ADKSADETERQKTEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFN 337

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S++P  E ++ +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +
Sbjct: 338 IGSAVPRQEMVLAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYM 397

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           L++ G+ E RIS++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 398 LVRGGLDEKRISQVSGFADRRLKLPADPFNAANRRIEILVQ 438



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNPF 72
          K A+  YFNP 
Sbjct: 62 KAAVATYFNPI 72


>gi|148260894|ref|YP_001235021.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402575|gb|ABQ31102.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 371

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 19/344 (5%)

Query: 12  DQFI-IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           DQ + +I ++  I +  ++ G+WK+ YADF+T +MAFFL+MW+INAT +  +  +  YF+
Sbjct: 13  DQAVNLIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFS 72

Query: 71  PFGKNLMTASKG---IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                L  A+ G    F    P ++ + +    ++   +  N V  ++  T Q +Q +  
Sbjct: 73  -QANVLNRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYQVPHTPQGQQIRPD 131

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 + N+      K   +  +        + +L+K  +        P S EK  A  
Sbjct: 132 HPTGNDMVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAP-SGEKAAAGT 190

Query: 188 RKKRLQDLA--------KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNT 234
                            +   S +  ++A +     + K V    T  G+ I I+D    
Sbjct: 191 GGAIGGLAPGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKR 250

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           PMF   S+ P P T+ +L KI  +L+   + I I G+TDA P+    +DNW LS++RA +
Sbjct: 251 PMFALGSARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANA 310

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              VL+K+G  +  I+++SG+A  +L I S+P+ +ANRR+ ILV
Sbjct: 311 TRAVLVKAGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILV 354


>gi|326404291|ref|YP_004284373.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301]
 gi|325051153|dbj|BAJ81491.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301]
          Length = 371

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 19/344 (5%)

Query: 12  DQFI-IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           DQ + +I ++  I +  ++ G+WK+ YADF+T +MAFFL+MW+INAT +  +  +  YF+
Sbjct: 13  DQAVNLIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFS 72

Query: 71  PFGKNLMTASKG---IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                L  A+ G    F    P ++ + +    ++   +  N V  ++  T Q +Q +  
Sbjct: 73  -QANVLNRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYEVPHTPQGQQIRPD 131

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 + N+      K   +  +        + +L+K  +        P S EK  A  
Sbjct: 132 HPTGNDMVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAP-SGEKAAAGT 190

Query: 188 RKKRLQDLA--------KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNT 234
                            +   S +  ++A +     + K V    T  G+ I I+D    
Sbjct: 191 GGAIGGLAPGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKR 250

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           PMF   S+ P P T+ +L KI  +L+   + I I G+TDA P+    +DNW LS++RA +
Sbjct: 251 PMFALGSARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANA 310

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              VL+K+G  +  I+++SG+A  +L I S+P+ +ANRR+ ILV
Sbjct: 311 TRAVLVKAGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILV 354


>gi|15964427|ref|NP_384780.1| flagellar motor protein MotB [Sinorhizobium meliloti 1021]
 gi|307311569|ref|ZP_07591210.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|15073604|emb|CAC45246.1| Chemotaxis (motility protein B) transmembrane [Sinorhizobium
           meliloti 1021]
 gi|306899586|gb|EFN30215.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 394

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 111/196 (56%), Gaps = 10/196 (5%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            R++  G  +    +  K+ +  EN         +  A   +K  + L  +I   L G  
Sbjct: 209 AREAASGPGVPDKAEGAKAADAPEN---------QAPAENPQKEAEALKAEIEKELGG-G 258

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A  +++G+       G+L++I +Q + PMF   S++P  E ++ ++KIG +LA     ++
Sbjct: 259 AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKELVLAMEKIGRLLAERPGAVA 318

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           +RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E+R+ +ISGFA  RL++ +D  
Sbjct: 319 VRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEERVKQISGFADRRLQVPNDAY 378

Query: 328 NSANRRIDILVEDRQG 343
             ANRRI+IL++  QG
Sbjct: 379 APANRRIEILLQSGQG 394



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116
           TK AI  YFNP    +   A KG+ D    P + +Q +       +D   TK+    K G
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114


>gi|307318924|ref|ZP_07598355.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895338|gb|EFN26093.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
          Length = 394

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 1/155 (0%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +K  + L  +I   L G  A  +++G+       G+L++I +Q + PMF   S++P  E 
Sbjct: 241 QKEAEALKAEIEKELGG-EAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKEL 299

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E+R
Sbjct: 300 VLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEER 359

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + +ISGFA  RL++ +D    ANRRI+IL++  QG
Sbjct: 360 VKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394



 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A +   ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADNHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116
           TK AI  YFNP    +   A KG+ D    P + +Q +       +D   TK+    K G
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114


>gi|218658934|ref|ZP_03514864.1| flagellar motor protein MotB [Rhizobium etli IE4771]
          Length = 151

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 91/135 (67%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G VA  + +G+       G+L+SI DQ +  MF+  S++P  E ++ +++IG +L     
Sbjct: 15  GGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMERIGTILKERGG 74

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ +
Sbjct: 75  AVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPA 134

Query: 325 DPMNSANRRIDILVE 339
           +P N+ANRRI+ILV+
Sbjct: 135 EPFNAANRRIEILVQ 149


>gi|2275156|gb|AAB81408.1| MotB [Sinorhizobium meliloti]
          Length = 394

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 1/155 (0%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +K  + L  +I   L G  A  +++G+       G+L++I +Q + PMF   S++P  E 
Sbjct: 241 QKEAEALKAEIEKELGG-EAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKEL 299

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E+R
Sbjct: 300 VLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEER 359

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + +ISGFA  RL++ +D    ANRRI+IL++  QG
Sbjct: 360 VKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394



 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116
           TK AI  YFNP    +   A KG+ D    P + +Q +       +D   TK+    K G
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114


>gi|319781670|ref|YP_004141146.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167558|gb|ADV11096.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 445

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 91/131 (69%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            D +  GV  E T  G++ISI DQ +  MF+  S++P  E ++ ++KIG ++      IS
Sbjct: 311 GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSALPRRELVLAMEKIGRIVNSQKGTIS 370

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTDA PFR+ + DNWRLS  RA+SAY +L++ GV E RI++++GFA  + KIA+DP+
Sbjct: 371 INGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKIAADPL 430

Query: 328 NSANRRIDILV 338
            +ANRRI+IL+
Sbjct: 431 AAANRRIEILM 441



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 17/147 (11%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +Q   + II+++     D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+  
Sbjct: 7   DQGRHEIIIVRRSHDDHDEAHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAVAS 66

Query: 68  YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSID---EHITKNSVDLKIGSTNQKKQ 123
           YFNP    +  ++ KG+ D  + P       + L+ D   E  +K   +   G+   +++
Sbjct: 67  YFNPVKLVDRNSSRKGLEDLGDGP-----RAMGLTADDPQEATSKAGQNGNAGAGASERK 121

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRD 150
             + E         QQ+EH  + L  D
Sbjct: 122 QDKQE--------PQQAEHSDDHLFAD 140


>gi|217976235|ref|YP_002360382.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
 gi|217501611|gb|ACK49020.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
          Length = 402

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 7/153 (4%)

Query: 193 QDLAKKISSTLSGLVADNIVKG-------VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           Q +  + +S  +GL A    KG       +  E T  G+LIS+ D R   MF   S+ PL
Sbjct: 245 QPMDTETASLKAGLTALAPQKGRFGDGPRIEVENTDEGLLISLTDDRKFSMFAIGSAAPL 304

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P+TI  + KIG++L   + ++ +RGHTDA PF++   DNWRLS  RA+ A  +L + G+ 
Sbjct: 305 PQTIEAMAKIGDLLKTRSGMVVVRGHTDARPFKSATYDNWRLSTARAHMAQYMLTRGGLD 364

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E RI KI GFA HRLK+A++P  +ANRRI+IL+
Sbjct: 365 EKRIEKIEGFADHRLKVAAEPTAAANRRIEILL 397



 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 5/96 (5%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          ++  Q I+I K+ + DD   + G+WKI +ADFMT +MA FLV+W+I++T D TK ++ QY
Sbjct: 3  EKEHQEIVIVKRYSRDDEARHGGAWKIAFADFMTAMMALFLVLWLISSTSDKTKHSVAQY 62

Query: 69 FNPFG-KNLMTASKGIFD----EQNPPERSSQNKID 99
          FNP    ++ T  KG  D    E     ++++++ID
Sbjct: 63 FNPVKLVDMTTLKKGFRDPKKTEMGAGPKTTESEID 98


>gi|13472587|ref|NP_104154.1| flagellar motor protein MotB [Mesorhizobium loti MAFF303099]
 gi|14023333|dbj|BAB49940.1| flagellar motor protein; MotB [Mesorhizobium loti MAFF303099]
          Length = 471

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 90/131 (68%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            D +  GV  E T  G++ISI DQ +  MF+  S++P  E ++ ++KIG ++      IS
Sbjct: 337 GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSAVPSRELVLAMEKIGRIVNSQKGTIS 396

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTDA PFR+ + DNWRLS  RA+SAY +L++ GV E RI++++GFA  + K  +DP+
Sbjct: 397 INGHTDARPFRSASYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKDPADPL 456

Query: 328 NSANRRIDILV 338
           ++ANRRI+IL+
Sbjct: 457 SAANRRIEILM 467



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query: 6  DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          D +    + II+++     D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+
Sbjct: 15 DADHGRHEIIIVRRAHDDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAV 74

Query: 66 EQYFNP 71
            YFNP
Sbjct: 75 ASYFNP 80


>gi|89902463|ref|YP_524934.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89347200|gb|ABD71403.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 314

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 61/330 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KK+       + G+WKI YADF+T +MAFFL+MW++ +T +  KK +  YF+   K 
Sbjct: 11  IIVKKIKKGGHVVHGGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDKKGLSDYFSAPLKV 70

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M    G             N I       +     DL    T +  Q +R +      S
Sbjct: 71  SMQGGSGA---------GGSNTI-------LPGGGADL----TQKSGQNRRGDG-----S 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +  Q     N++  +                                 +A +  K+L  +
Sbjct: 106 DPMQKRMAANAVKAE---------------------------------VAKQDAKKLAGI 132

Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + KIS+ +SG        + +  ETT  G+ I I+D +  PMFD  S++  P    +L++
Sbjct: 133 SAKISALISGNTKLTEFSRQIRLETTADGLQIQIVDDQKRPMFDSGSAVVKPYMRDILRE 192

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG  L      IS+ GHTD+SP+ +  R   NW LS DRA ++ + L+ +G+ +D+++++
Sbjct: 193 IGGALNGVENKISLDGHTDSSPYSSAQRGYSNWELSSDRANASRRELVAAGMPDDKLARV 252

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A   L    +P  + NRRI I V  R+
Sbjct: 253 VGLASSILLDPENPTGAVNRRISITVMTRE 282


>gi|254293721|ref|YP_003059744.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
 gi|254042252|gb|ACT59047.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
          Length = 303

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 150/328 (45%), Gaps = 48/328 (14%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN T  D K+ I  YF P   
Sbjct: 7   IVIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPDQKRGIADYFAP--- 63

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
              + SK                         ++   D  +G T+ +    R       +
Sbjct: 64  --ASVSK-------------------------SRQGSDGMLGGTSFQDDGARSGGTNRPM 96

Query: 135 SNSQQSEHCKNSLTRDS-EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---K 190
             S+Q+   + + T+++     +  KS ++ +S            +  K +AM+ +   +
Sbjct: 97  PESKQTASKRRTSTKNAGTPSNETNKSKEVSQS------------AMSKAIAMREQAEFE 144

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R +   ++    +  L A  + K ++ + T  G+ I I+DQ    MF  +S+ PLP    
Sbjct: 145 RAEQSLRQAMQDMPDLAA--LSKHLVIDQTPEGMRIQIVDQEGRAMFAAASAKPLPRAEK 202

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  + +V+      +SI GHT   P       NW+LS DRA SA  +L  SG+  DRI 
Sbjct: 203 ILAAVSQVIMKLPNRVSISGHTGDLPTGVEGYSNWQLSSDRANSARSILESSGLDADRIY 262

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
           ++SG A        DP    NRRI I++
Sbjct: 263 QVSGKAGSEPLYPDDPDLPGNRRISIVL 290


>gi|261855636|ref|YP_003262919.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261836105|gb|ACX95872.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 358

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 152/328 (46%), Gaps = 63/328 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           II KKV+     ++ G+WKI YADF+T +MAFFL+MW++ +  +   K I  YFN P   
Sbjct: 11  IIIKKVSKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSVGEVKLKGIADYFNNPVKV 70

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L         E  P    S + ID    E +T+    ++ GS    K            
Sbjct: 71  TL---------EGGPSAGMSVSLIDAG-GEDLTRKEGQVRNGSEPPAK------------ 108

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                 E  +  +T +  +           K I +E+                 KKR+++
Sbjct: 109 -----IETDQKKMTEEEAR-----------KKIEEED-----------------KKRIEN 135

Query: 195 LAKKISSTLSGLVADNIVKG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L K++ S ++    D  +K     +  + TR G+ I IIDQ N PMF  SSS   P    
Sbjct: 136 LKKELESLIN---VDPALKAYKDQIKLDMTRDGLRIQIIDQANRPMFKISSSRLEPYAAE 192

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L+K+  V+      +SI GHTD+ P+  + R NW LS DRA +A + L++ G  E ++ 
Sbjct: 193 ILKKLAPVINKLPNRLSITGHTDSLPYNGVDRTNWELSADRANAARRELVQDGYDESKLL 252

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
           ++ G A     I SDP +  NRRI I+V
Sbjct: 253 RVVGMAAALPFIPSDPADPRNRRISIIV 280


>gi|327482425|gb|AEA85735.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166]
          Length = 337

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 147/332 (44%), Gaps = 68/332 (20%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +N Q II+K  KKVA     ++ G+WKI +ADF T +MAFFLVMW++++   + KK I  
Sbjct: 2   DNTQPIIVKRVKKVA---GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISG 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF                 Q+P          +   E  + + +DL  G T      + L
Sbjct: 59  YF-----------------QDP----------IGFTESASPHVIDL--GGTPTPSPDRTL 89

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                   N  + E        DSE+ + L +                  L +E++  + 
Sbjct: 90  --------NQVEQEPASKDAQFDSEQAETLAEQ-----------------LERERLDLV- 123

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               LQ+L  K+               +LFE T+ G+ I I+D  N PMF   S+   P 
Sbjct: 124 ----LQELQNKVDENPE---LQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE 306
              +L  + E +A     ISI GHTDA PF       NW LS  RA +A + L+  G  E
Sbjct: 177 FEDILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPE 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++I+++ G+A   L    DP N  NRRIDILV
Sbjct: 237 EQIARVVGYASSALFDRKDPFNPVNRRIDILV 268


>gi|332527142|ref|ZP_08403219.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332111570|gb|EGJ11552.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 322

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 73/336 (21%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II K+V       + G+WKI YADF+T +MAFFL+MW++ +T +  +             
Sbjct: 11  IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDR------------- 57

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                KGI D    P +                  V L  G +        L+       
Sbjct: 58  -----KGIADYFTSPLK------------------VALNSGGSGAGDASHVLKGG----- 89

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----- 190
                             G+DL ++T   K  + E      P +   + A+K+++     
Sbjct: 90  ------------------GQDLTRTTGQVKRGDIEA-----PRATVNLQALKQEQVRAEI 126

Query: 191 -RLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            RLQDL ++I   ++     + ++  L  + TR G+ I I+D++N PMF   S++  P  
Sbjct: 127 VRLQDLKRRIEEKIAANKRLSAMRSQLRLDMTRDGLRIQIVDEQNRPMFASGSAVVQPYM 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSE 306
             +LQ+IG VLA     +++ GHTDA  +    R   NW LS DRA ++ +VL + G+ E
Sbjct: 187 RELLQEIGSVLAEVPNRLTLEGHTDAMAYAGGERGYSNWELSSDRANASRRVLAEGGLPE 246

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           DR+ ++ G A  +     DP+   NRRI I+V +R+
Sbjct: 247 DRMLRVQGLASSQPFDRQDPLAPTNRRISIIVMNRE 282


>gi|260466608|ref|ZP_05812796.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029614|gb|EEW30902.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 466

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 88/131 (67%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            D +  GV  E T  G++ISI D+ +  MF+  S++P  E ++ ++KIG ++      IS
Sbjct: 332 GDKLHDGVSVEATDKGVVISITDRLDFGMFEVGSALPSRELVLAMEKIGRIVNSQKGTIS 391

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTDA PFR+ + DNWRLS  RA+SAY +L++ GV E RI++++GFA  + K  +DPM
Sbjct: 392 INGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKDPADPM 451

Query: 328 NSANRRIDILV 338
            + NRRI+IL+
Sbjct: 452 AAVNRRIEILM 462



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          + II++      D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+  YFNP
Sbjct: 12 EIIIVRHAHGDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAVASYFNP 70


>gi|83858208|ref|ZP_00951730.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853031|gb|EAP90883.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633]
          Length = 303

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 148/327 (45%), Gaps = 42/327 (12%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           +DQ I+IKK        ++ G+WK+ YADF+T +MAFFL+MW+IN T+ + ++ I  YF 
Sbjct: 3   SDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLMMWLINNTEPEQRQGIADYFA 62

Query: 71  PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P   +  T  S G+    +  +  ++     SI E +   S                 E 
Sbjct: 63  PASVSRTTSGSGGVLGGTSFGDDGARGSGSSSIVERLAPRS-----------------EQ 105

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           ++   S  Q+++    +     E   D   S        +E   F    S E+ L    +
Sbjct: 106 DV---SREQEADQASGAAGGQPEASSDALASA----VARREAAQFA---SAEQSL----R 151

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + LQD+ +             + + VL E T  G+ I +IDQ   PMF+  +  P     
Sbjct: 152 QALQDMPELA----------ELSRHVLIEETPEGLRIQLIDQEGRPMFEPGAIEPNSRAR 201

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+L+ I E++      I+I GHTDASP       NW LS  RA +A  ++ ++G+ + RI
Sbjct: 202 VLLRTISEIVLRLPNRITISGHTDASPAPVGGVSNWELSSARANAALNIMTEAGIPDHRI 261

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDI 336
           +++ G A        DP    NRR+ I
Sbjct: 262 AEVRGKAGAEPLFPDDPYLPGNRRLSI 288


>gi|315499937|ref|YP_004088740.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48]
 gi|315417949|gb|ADU14589.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
          Length = 300

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 46/308 (14%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA-SKGIFDEQNPP 90
           +WK+ YADF+T +MAFFL+MW+IN T  + KK +  YF P   +  T+ S GI       
Sbjct: 25  AWKVAYADFVTAMMAFFLLMWLINTTSPEQKKGVADYFAPASVSQTTSGSGGILAGTAIG 84

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
               + +  ++  EH+   + D++      K        N   LS + + E  +      
Sbjct: 85  RDGVKQEGSMAFIEHMAPEAPDVQDRDGTAK--------NAADLSQTPEEELRE------ 130

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                      +L+K   +EE  F       +  A   ++ LQD+ +             
Sbjct: 131 -----------ELQK---REEASF-------RSAAESLRQALQDMPELA----------E 159

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K +L + T  G+ I +IDQ    MF+ +S+ P     ++L+ + +V+      ISI G
Sbjct: 160 LSKNILVDQTPEGLRIQLIDQEGRAMFNANSTQPNERARLLLRAVAKVVNQLPNRISITG 219

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HT  +P    +  +W+LS DRA ++ QVL  +GV +DR++++SG A        DP  + 
Sbjct: 220 HTTGTPGMGQSDKDWKLSADRADASRQVLQGAGVDQDRVAQVSGKAAKEPLYPDDPTLAG 279

Query: 331 NRRIDILV 338
           NRRI I++
Sbjct: 280 NRRIAIIL 287


>gi|171057687|ref|YP_001790036.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170775132|gb|ACB33271.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 320

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 142/328 (43%), Gaps = 60/328 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II K+V       + G+WKI YADF+T +MAFFL+MW++ +T +  KK I+ +F    K 
Sbjct: 11  IIIKRVKKGGHSAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDKKGIQDFFQSPLKV 70

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M+   G  D  +  +    +         +++ S  +K G    KK Y     N   + 
Sbjct: 71  AMSGGAGAGDATSVIKGGGTD---------LSQTSGQVKRGEVPSKKTY-----NAEAIK 116

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            SQ+                             K E   L  L +     M    +L + 
Sbjct: 117 TSQR-----------------------------KAEQERLETLRQRVQDVMANSPKLAEF 147

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             +I                  + TR G+ I I+D++N PMFD  +S   P    +L+ I
Sbjct: 148 KNQIR----------------LDMTRDGLRIQIVDEQNRPMFDSGASEVKPYMREILRAI 191

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           G VL      +++ GHTDA P  + A   NW LS DRA ++ + L+  G+ + R+ ++ G
Sbjct: 192 GSVLTEVPNRLTLEGHTDAKPMGSGAGYSNWELSSDRANASRRELLAGGLDDARVLRVQG 251

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342
            A        DP+N  NRRI I+V  R+
Sbjct: 252 LAASVPFDQQDPLNPINRRISIIVMTRE 279


>gi|291613013|ref|YP_003523170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583125|gb|ADE10783.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 63/338 (18%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           E+ + I+IK  KKVA     ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +
Sbjct: 4   EDKRPIVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGISE 60

Query: 68  YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YF  P    LM  +               + I     + +T+ +  +K G    +K+   
Sbjct: 61  YFKTPLKVALMGGTG----------SGDSSSIIKGGGQDLTRATGQVKSGELLPEKKVIN 110

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           L+        + Q E  +    ++ EK KDL    ++EK+I+ +             + +
Sbjct: 111 LK--------ATQEEFERLERKKELEKLKDL--KANIEKAIDTD-------------VKL 147

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K+ K                        +L + T  G+ + I+D++N PMF   SS   P
Sbjct: 148 KKYKNQ----------------------ILLDLTTEGLRVQIVDEKNRPMFQSGSSELEP 185

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L +IG++L      IS+ GHTDA P+    R   NW LS DRA ++ + L+  G+
Sbjct: 186 YTKDILHEIGQMLNTMPNKISLSGHTDAQPYVTADRHYSNWELSADRANASRRELINGGL 245

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +ED+I ++ G +   L   + P+N  NRRI I+V +++
Sbjct: 246 AEDKIVRVVGLSSAVLFDKAQPLNPINRRISIIVMNKR 283


>gi|83955101|ref|ZP_00963757.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1]
 gi|83840430|gb|EAP79603.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1]
          Length = 394

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 58/347 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----P 71
           + KK   I+   ++ G WK+ YADFMT +MAFFL+MWI+++ D+   + I +YF     P
Sbjct: 9   VFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFTNATLP 68

Query: 72  FGKNLM-----------TASKGIFDEQNPPERSSQNKIDLSI-------DEHITKNSVDL 113
            G  ++           TAS G    +     S   KID          DE  T    + 
Sbjct: 69  GGSGVLDGATLGPPGTLTASNGAIVARG----SELGKIDDPASAKWEIRDETATSVPDET 124

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           +IGS +   +     N       +          T D+    D  K   LE+ I      
Sbjct: 125 QIGSEDGAHENPAAANVASASQTASDGSKSAGDATIDNVHALDNEKFKKLEQDI------ 178

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                    + AM+    L                D + K ++F+ T  G+ I IIDQ  
Sbjct: 179 ---------LQAMQENPDL----------------DPLKKNLIFQQTPEGLQIQIIDQEG 213

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
            PMF    +     T  +L  +G+ LA     I++ GHTDA  F N  + DNW LS DRA
Sbjct: 214 QPMFYSGRAEMQGATDQLLANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRA 273

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            +  +V   SGV+ DRI ++SG A     +  +P +++NRRI + V+
Sbjct: 274 NATRRVFEASGVARDRIIRVSGLADTAPLVPENPTDASNRRITVSVQ 320


>gi|152985187|ref|YP_001351001.1| flagellar motor protein MotB [Pseudomonas aeruginosa PA7]
 gi|150960345|gb|ABR82370.1| chemotaxis protein MotB [Pseudomonas aeruginosa PA7]
          Length = 342

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 156/336 (46%), Gaps = 57/336 (16%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +P G +               E +S   IDL               G T      + L 
Sbjct: 61  QDPIGFS---------------ESASPYVIDL---------------GGTPTPAPDKTLN 90

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +    +S +S   + S  +D +   D  +S  L + + +E    L             
Sbjct: 91  PQVQAQPDSNES---RISPEQDHQVNADQAES--LAEQVERERLALL------------- 132

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              LQ+L  K+       +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 133 ---LQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPET 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +IS++ G+A  RL    DP+N  NRRIDI+V  R+ 
Sbjct: 247 QISQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282


>gi|114570105|ref|YP_756785.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114340567|gb|ABI65847.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 307

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 41/309 (13%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI-FDEQNPP 90
           +WK+ YADF+T +MAFFL+MW+IN T  + K+ I  YF P   +   +  G      +P 
Sbjct: 25  AWKVAYADFVTAMMAFFLLMWLINTTTPEQKRGIADYFAPASVSPSNSGSGAPLAGTSPG 84

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           +   Q   D S  + +   +  L     N + + Q  E +   + +  +      S   +
Sbjct: 85  DDGVQGSGDSSQRQRLAPTAPQL-----NDRDRQQTPEGSPEAVESVTE---ITASAMAE 136

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           +++ +D  +      S+ +               AM+    L +L+              
Sbjct: 137 AQQRRDAAELHSASMSLRQ---------------AMQEMPELAELSNH------------ 169

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
               VL + T  G+ I +IDQ   PMFD  ++ P    + +L+ +  +       +S+ G
Sbjct: 170 ----VLIDETPEGLRIQLIDQEGRPMFDPGATRPNERAVTLLRAVARIAERLPNRLSVAG 225

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HTD++P    A   NW LS DRA +A  VL ++G+S+DRI ++ G A        DP   
Sbjct: 226 HTDSAPAAPGADYTNWELSADRANAARSVLQRAGISDDRIYEVRGKAGSEPLYPDDPYMP 285

Query: 330 ANRRIDILV 338
            NRRI +++
Sbjct: 286 GNRRISVVL 294


>gi|83944198|ref|ZP_00956654.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36]
 gi|83845065|gb|EAP82946.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36]
          Length = 394

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 58/347 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----P 71
           + KK   I+   ++ G WK+ YADFMT +MAFFL+MWI+++ D+   + I +YF     P
Sbjct: 9   VFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFTNATLP 68

Query: 72  FGKNLM-----------TASKGIFDEQNPPERSSQNKIDLSI-------DEHITKNSVDL 113
            G  ++           TAS G    +     S   KID          DE  T    + 
Sbjct: 69  GGSGVLDGATLGPPGTLTASNGAIVARG----SELGKIDDPASAKWEIRDETATSVPDET 124

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           +IGS +   +     N       +          T D+    D  K   LE+ I      
Sbjct: 125 QIGSEDGAHENPAAANVASASQAASDGSKSAGDATIDNVHALDNEKFKKLEQDI------ 178

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                    + AM+    L                D + K ++F+ T  G+ I IIDQ  
Sbjct: 179 ---------LQAMQENPDL----------------DPLKKNLIFQQTPEGLQIQIIDQEG 213

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
            PMF    +     T  +L  +G+ LA     I++ GHTDA  F N  + DNW LS DRA
Sbjct: 214 QPMFYSGRAEMQGATDQLLANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRA 273

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            +  +V   SGV+ DRI ++SG A     +  +P +++NRRI + V+
Sbjct: 274 NATRRVFEASGVARDRIIRVSGLADTAPLVPENPTDASNRRITVSVQ 320


>gi|114797285|ref|YP_758982.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444]
 gi|114737459|gb|ABI75584.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444]
          Length = 287

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 149/324 (45%), Gaps = 52/324 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           IIK+K       ++ G+WK+ YADF+T +MAFFL+MW++NAT ++ +K I  YFNP    
Sbjct: 12  IIKRKKVYKADGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYFNP---- 67

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                        P  R S    D      I       K+G+   +K             
Sbjct: 68  -----------TIPISRISGGGSDGLNGSSIFSEDTYAKMGTGANRK------------- 103

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                E  +N    D  K KD    T+   ++ K+        ++EK +A      LQ L
Sbjct: 104 -----ETVENPAYGDG-KTKDAQDQTEDVDTLAKQ--------AEEKQIA----DELQGL 145

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            + +S+      +  + + ++ + +  GI++ I D  +TP+F    S P    + ++  +
Sbjct: 146 KESLSAE-----SRQLSEHLMIKMSPEGIVLEITDSESTPLFPLGRSEPSETMVQLIDVV 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            E  A     I I GHTD+  +RN A  DNW LS DRA +A ++L ++ +  DRI ++SG
Sbjct: 201 AESFAEFDNDIKIVGHTDSHRYRNGAIYDNWNLSADRANAARRLLSRADIPSDRIREVSG 260

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A     +  DP  + NRRI I +
Sbjct: 261 KADTDPLVKDDPQAAQNRRISITI 284


>gi|71906362|ref|YP_283949.1| flagellar motor protein MotB [Dechloromonas aromatica RCB]
 gi|71845983|gb|AAZ45479.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 316

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 151/327 (46%), Gaps = 63/327 (19%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
           I+IK+K  +    +  G+WKI YADF+T +MAFFL+MW++ +T     + I  +F NP  
Sbjct: 9   IVIKRKKVVAGGAHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGIADFFQNPL- 66

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                       +Q          I     + +T+ S  +K G    KK           
Sbjct: 67  ---------KVSQQGGAGSGDATSILQGGGKDLTRQSGQVKRGDVEAKKSTS-------- 109

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            S   Q+E  +    ++ E+ + L  S  +EK I +      P L++ K           
Sbjct: 110 FSKEAQAEFRR----KEQERLESLKAS--IEKMIEQS-----PQLAQFK----------- 147

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                              K +L + T  G+ I I+D++N PMFD SS+   P T  +L+
Sbjct: 148 -------------------KQMLLDITSEGLRIQIVDEQNRPMFDSSSADLKPYTRDILR 188

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG+ L   +  IS+ GHTDA+ F    +   NW LS +RA ++ + L+  G+ + ++ +
Sbjct: 189 QIGKALNGVSNRISLAGHTDAAQFAGGEKGFSNWELSANRANASRRELVVGGMDDSKVLR 248

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           + G A   L   +DP+NS NRRI I+V
Sbjct: 249 VVGLASTVLFDKNDPLNSVNRRISIVV 275


>gi|254419004|ref|ZP_05032728.1| OmpA family protein [Brevundimonas sp. BAL3]
 gi|196185181|gb|EDX80157.1| OmpA family protein [Brevundimonas sp. BAL3]
          Length = 297

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 144/336 (42%), Gaps = 61/336 (18%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           +D+ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN TD + KK I +YF 
Sbjct: 2   SDRPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKKGIAEYFA 61

Query: 71  PFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           P   +  T+  G         +  P    SQ     S+ E +                  
Sbjct: 62  PASVSETTSGSGGILGGTALGDDGPKSSGSQ-----SVLEQLAP---------------- 100

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                           E   ++ T  S           L+  I K E       ++    
Sbjct: 101 ----------------EAPADATTAGSSTNLASASEAALQAEIQKREAAEFASAAESLRQ 144

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           AM+    L +L+K++                + + T  G+ I ++DQ    MFD +S+ P
Sbjct: 145 AMQSMPELAELSKQL----------------IVDQTPEGLRIQLVDQEGRSMFDNNSARP 188

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKS 302
                V+L+ + +V+      ISI GHT A+P  N A    +W LS +RA  +  VL  +
Sbjct: 189 NARAQVLLRAVAKVINQLPNRISITGHTSATPGSNRASGPADWTLSSERANGSRLVLQSA 248

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           GV  DR+  ++G A        DP  + NRRI I++
Sbjct: 249 GVDADRVYSVAGKAGSDPLYPDDPTLAGNRRIAIVL 284


>gi|15600146|ref|NP_253640.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAO1]
 gi|107104052|ref|ZP_01367970.1| hypothetical protein PaerPA_01005125 [Pseudomonas aeruginosa PACS2]
 gi|116053102|ref|YP_793421.1| flagellar motor protein MotB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894048|ref|YP_002442917.1| flagellar motor protein MotB [Pseudomonas aeruginosa LESB58]
 gi|254238332|ref|ZP_04931655.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719]
 gi|254244159|ref|ZP_04937481.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192]
 gi|313109955|ref|ZP_07795882.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016]
 gi|9951234|gb|AAG08338.1|AE004908_4 chemotaxis protein MotB [Pseudomonas aeruginosa PAO1]
 gi|115588323|gb|ABJ14338.1| chemotaxis protein MotB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170263|gb|EAZ55774.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719]
 gi|126197537|gb|EAZ61600.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192]
 gi|218774276|emb|CAW30093.1| chemotaxis protein MotB [Pseudomonas aeruginosa LESB58]
 gi|310882384|gb|EFQ40978.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016]
          Length = 347

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 57/335 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +P G +  +AS  + D    P  +    ++  +      N   +   S  Q  Q     
Sbjct: 61  QDPIGFS-ESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRI---SPEQDHQV---- 112

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                  N+ Q+E+    + R+                                 LA+  
Sbjct: 113 -------NADQAENLAEQVERER--------------------------------LAL-- 131

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              LQ+L  K+       +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 132 --LLQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +I+++ G+A  RL    DP+N  NRRIDI+V  R+
Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRK 281


>gi|296391793|ref|ZP_06881268.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAb1]
          Length = 347

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 57/335 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +P G +  +AS  + D    P  +    ++  +      N   +   S  Q  Q     
Sbjct: 61  QDPIGFS-ESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRI---SPEQDHQV---- 112

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                  N+ Q+E+    + R+                                 LA+  
Sbjct: 113 -------NADQAENLAEQVERER--------------------------------LAL-- 131

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              LQ+L  K+       +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 132 --LLQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +I+++ G+A  RL    DP+N  NRRIDI+V  R+
Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRK 281


>gi|285019703|ref|YP_003377414.1| flagellar motor protein [Xanthomonas albilineans GPE PC73]
 gi|283474921|emb|CBA17420.1| probable flagellar motor protein [Xanthomonas albilineans]
          Length = 383

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 62/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ YADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   ETKSTVIIRRVKKVQGGGHHGGAWKVAYADFVTAMMAFFLVLWLVAATTKEQRAAIAEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+      P  +S + I               K+G + +    QR
Sbjct: 63  RNPSPLAGKSPAPSPGMAG----PGGASTSMI---------------KLGGSGE---LQR 100

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             N   + S S + +  K S  R+ EK +      +++++I+K +   L P   +     
Sbjct: 101 GNNKDPFGSKSLKGDDSKIS-QREKEKQRLESLMQEMKEAIDKSQA--LEPFKDQ----- 152

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D+ N PMFD  S++  P
Sbjct: 153 ----------------------------LLLDLTPDGLRIQIVDKENRPMFDLGSAVLKP 184

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305
            T  +L ++   +      ISI GHTD + +       NW LS DRA +A + L+  G+S
Sbjct: 185 YTRGILHELSGFINQVPNHISITGHTDVTQYSGKNGYSNWELSADRANAARRELVAGGMS 244

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ED++S++ G +   L     P N  NRRI I+V
Sbjct: 245 EDKVSRVVGLSSSVLFDKQVPNNPINRRISIVV 277


>gi|302878239|ref|YP_003846803.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302581028|gb|ADL55039.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 328

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 159/338 (47%), Gaps = 63/338 (18%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +N + I+IK  KKVA     ++ G+WKI YADF+T +MAFFL+MW++ +T       I Q
Sbjct: 5   KNKRPIVIKRIKKVA---AGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLAGISQ 61

Query: 68  YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YF  P    L   S               + I     + +T+ +  +K G     K+   
Sbjct: 62  YFKTPLKVALAGGSG----------SGDSSSIIKGGGKDLTRTTGQVKAGDVASDKR--- 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               I  +  SQQ E+ +      +E+ K++ K  +L++SI K               A+
Sbjct: 109 ----IINVKESQQ-EYLR------AEREKEMTKLKELKESIEK---------------AI 142

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              ++L+    +I                L + T  G+ I I+D++N PMF    +   P
Sbjct: 143 DNSEKLKQFKSQI----------------LLDITSEGLRIQIVDEKNRPMFQSGRAQLEP 186

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
            T  +L  IG+ L      +SI GHTDAS +    I   NW LS DRA ++ + L+  G+
Sbjct: 187 YTREILHAIGQTLNDVPNKVSISGHTDASVYGGGGIGYSNWELSADRANASRRELIAGGM 246

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++I ++ G +   L    DP++  NRRI +++ +++
Sbjct: 247 ADEKIVRVVGLSSAVLFKKEDPLSPTNRRISLIIMNKK 284


>gi|58038613|ref|YP_190577.1| chemotaxis MotB protein [Gluconobacter oxydans 621H]
 gi|58001027|gb|AAW59921.1| Chemotaxis MotB protein [Gluconobacter oxydans 621H]
          Length = 311

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 153/325 (47%), Gaps = 33/325 (10%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II K+  + +  ++ G+WKI YADF+T +MAFFLVMW+INAT +D +K I  +FNP    
Sbjct: 12  IIIKRFDVVEGGHHGGAWKIAYADFVTAMMAFFLVMWLINATTEDQRKGIANFFNPMA-- 69

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--KNSVDLKIGSTNQKKQYQRLENNIFY 133
                  ++ +  PP     + +  +  E ++     V LK G    K QY +       
Sbjct: 70  -------VWKDMPPPV----DNVLPAAPEPVSLETKPVALKPG----KDQYGKAPQGA-- 112

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            + SQQ +      T  S     +    D +  I   E    P  S +K     R +  Q
Sbjct: 113 -AGSQQGK----DQTAPSVHTAQIVVLHDSQ--IQPGEPPVTP--SAQKAEQEARAEAAQ 163

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            +   IS+T    +AD +   V       G+ + I D  + PMF    S P P  + +++
Sbjct: 164 KIQALISNTPE--LAD-VRSQVSVTVGDDGLHVQIADSDHQPMFAMGQSSPNPHAVQLIK 220

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            I   L      +SI G+TDA+P+R     NW LS  RA +   ++++SG  + R+  +S
Sbjct: 221 AIVPYLEKLHGKLSIAGYTDAAPYRPGQLSNWSLSSARAVAVRDLVVQSGFPDRRLKSVS 280

Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338
           G+A   L   + P+N  NRRI +++
Sbjct: 281 GYADRNLFDPTQPLNPRNRRIVLVL 305


>gi|84502387|ref|ZP_01000523.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597]
 gi|84389199|gb|EAQ01996.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597]
          Length = 339

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 33/319 (10%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           WK+ YADFMT +MAFFL++WI+ A+D++  + +  YF P     ++ + G          
Sbjct: 26  WKVAYADFMTAMMAFFLLLWILAASDEEALRGLADYFTPS----LSQAGG---------- 71

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL----ENNIFYLSNSQQSEHCKNSLT 148
             Q  +D +I   I  N      G +N      RL    + N   + +S+  +   + + 
Sbjct: 72  KGQGMLDGTI---IAPNG---DQGGSNTPDGNTRLPSFGQENPLAVFDSRLRDEATDVIV 125

Query: 149 R--DSEKG----KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISS 201
                E G    K + +  D E     E+      L ++    +K R+  ++ L ++I  
Sbjct: 126 EYETKEDGTMEPKSMGEGEDEEDGSAAEQAAERQALEEQYQAEVKEREANMERLEEEIRR 185

Query: 202 TLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            +   V  +++ + + F+ T  G+L+ I+D+    MF + S+     T  +++ IGE + 
Sbjct: 186 HIQERVDLEDLGENLRFDRTSEGLLVQIMDKEGRSMFARGSARVDSRTRDLIRIIGESIV 245

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTDA PF  N+   NW LS DRA +  +VL+ +GVS  RI +ISG A   
Sbjct: 246 DMQNAIVITGHTDAVPFVNNLGYSNWELSADRANATRRVLIDTGVSPARIKRISGLASTD 305

Query: 320 LKIASDPMNSANRRIDILV 338
              A DP  + NRRI +L+
Sbjct: 306 PLNADDPEAAENRRIGVLL 324


>gi|209964663|ref|YP_002297578.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|209958129|gb|ACI98765.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 364

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 45/331 (13%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------------FGKNLMT 78
           +WK+ YADF+T +MAFFL++W++N T  + K+ I  YF+P              G   +T
Sbjct: 28  AWKVAYADFVTAMMAFFLLLWLLNVTTSEQKQGIADYFSPASPSKQESGAGGVLGGQTIT 87

Query: 79  ASKGIFDEQNPPE--------RSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRLEN 129
                 ++ +PP+         +S N  +   D +  TK   D       Q K  Q    
Sbjct: 88  VPGAKINQSSPPQLTVPVPSMPASANSEEQVEDFDSSTKGRPD-----GTQDKVGQGEAG 142

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDL-CKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +     +S+     K    R ++K +D      +L++++ K E       ++E   A+++
Sbjct: 143 DSGGPGDSRLDALEKAGEIRQADKNRDGKIDEKELKEALAKLEQEQFQRTAQELRQAIQQ 202

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              L++L++        LV DN         T  G+ I ++DQ    MF   S+  LP+T
Sbjct: 203 VPELRELSQN-------LVIDN---------TPEGLRIQLVDQEGYSMFPSGSANMLPQT 246

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             ++  + + +      +S+ GHTD++PF    +R NW LS +RA ++ + L+ +GV E+
Sbjct: 247 AQLMALVAQAVGKLPNHLSVSGHTDSTPFAAGSSRSNWDLSTERANASVRALLAAGVPEN 306

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RI +++G A        DP +  NRR+ I++
Sbjct: 307 RIDQVTGRADRDHLFPDDPRSPRNRRVSIVL 337


>gi|209963560|ref|YP_002296475.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|7025363|gb|AAF35851.1|AF220005_2 lateral flagellar motor protein MotB [Rhodospirillum centenum]
 gi|209957026|gb|ACI97662.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 325

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 33/333 (9%)

Query: 15  IIIKKKVAID-DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
           I+IK++   + D     G+WKI YADF+T +MAFF+++W++N T  + +  I  YFNP  
Sbjct: 10  IVIKRRAQEESDELEGNGTWKIAYADFVTAMMAFFMLLWLVNVTTPEQRHGIADYFNPIA 69

Query: 74  -KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +  + + G    Q+     +      S  E I       ++ + +     + L++   
Sbjct: 70  VSDANSGANGQLAGQSVAREGALTSNAASAWETIPT----ARVPTLSPPGPDRELDDGEG 125

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK---EENYFLPPLSKEKILAMKRK 189
             +++Q++     +       G     +  LE+ + +   EE  F      ++I     +
Sbjct: 126 GGASAQENAESAPA------DGNGTPMTAALEQQLQQVAAEEQSF------DRI-----E 168

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + ++D      + +S +   ++ + ++FE T  G+ I I D+ +  MFD  ++      +
Sbjct: 169 QSVRD------ALMSAVDLADLSQNLVFERTADGLRIQITDRPHFSMFDSGATDLNGRAV 222

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + E L+     I+I GHTD  PF   AR  NW LS DRA +A +VL++ G+   R
Sbjct: 223 TLLGIVAEALSGVPNRIAISGHTDGRPFAANARYGNWELSADRANAARRVLLQKGIQPGR 282

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           ++++ G A     +  DP +  NRRI I+V  R
Sbjct: 283 VARVEGLADTLHLLPEDPGDPRNRRISIIVMRR 315


>gi|288958120|ref|YP_003448461.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288910428|dbj|BAI71917.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 386

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 147/345 (42%), Gaps = 57/345 (16%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-------GKNLMTASKGI- 83
           +WK+ YADF+T +MAFFL++W++N T  D +K I  YF+P        G   M   K I 
Sbjct: 28  AWKVAYADFVTAMMAFFLLLWLLNVTTSDQRKGIADYFSPVSVSREQSGSGGMLGGKTIT 87

Query: 84  ---------------FDEQNPPERSSQNKIDLSIDEHIT-------------KNSVDLKI 115
                               PP  SSQ   D       T             K + D  I
Sbjct: 88  VPGAQVSPSSPMSADVPVSGPPGYSSQQSDDADDPTEATSGPGQGTGPGKPAKAAPDADI 147

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
              +QK    R E   F     + ++       +  EK  D  +   +++++N  +    
Sbjct: 148 --ADQKPNETRAE---FQKRMEEMAKQLGIPGQKPGEKLSDFGER--VKEAMNSLQG--- 197

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNT 234
                    A K  ++ Q  A +I   +  +   + + + ++ + T  G+ I I+DQ   
Sbjct: 198 ---------AAKEARQFQQAATEIRQAIQSVPELEPLAQNLMIDQTPEGLRIQIVDQDRV 248

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAY 293
            MF   S    P+T  ++Q++ + L      +SI GHTD+SPF     RDNW LS +RA 
Sbjct: 249 SMFPAGSGQMYPQTRQLVQQVAKALTKLPNKLSISGHTDSSPFPAGSGRDNWDLSTERAN 308

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  + L+  G++  RI  + G A     +A  P +  NRRI +++
Sbjct: 309 ATRRALLAGGINPSRIQNVVGKADTDPLVADQPNSPRNRRITMVL 353


>gi|89068739|ref|ZP_01156125.1| MotB [Oceanicola granulosus HTCC2516]
 gi|89045702|gb|EAR51764.1| MotB [Oceanicola granulosus HTCC2516]
          Length = 345

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 23/341 (6%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q III++        ++ G WK+ YADFMT +MAFFL+MWII A+D++  + I  YF P 
Sbjct: 6   QPIIIRRMTEDAHDGHHGGGWKVAYADFMTAMMAFFLLMWIIAASDEEKLRGIADYFTPS 65

Query: 73  GKNLMTASKGIFD-EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK----QYQRL 127
                 A  G+ D E    + +    +   +     +N +++    T +      +Y  +
Sbjct: 66  LVTADGAGSGLLDGEAVEGQGTRGGGVVPELPSFGQENPLEISANRTPEAPSVIVEYVPV 125

Query: 128 ENNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           E+    L +   +  H       D E        +  E S  +              LA 
Sbjct: 126 ED----LGDDPFARLHAAAGEVVDGETTPLDGAGSAPEASEGEAGTAASEAALAAAELAE 181

Query: 187 KRKKRLQDLAKKISSTLS-----GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           +R   L+ L  ++   ++        A+N+    L + T  G+   I+D     MF   S
Sbjct: 182 QRAAALEVLRGEVEERIAEDPELATFAENL----LVDATDLGLRFQIVDHEGVAMFRSGS 237

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQV 298
           +     T  ++  +GE +      ++I GHTD+ PF   ARD   NW LS DRA +A + 
Sbjct: 238 AEIEESTRELIGVVGETIRGLPYPVAITGHTDSVPFSG-ARDGYSNWELSADRANAARRT 296

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           L+ +GV   RI +ISG A   L++   P    NRRI++L++
Sbjct: 297 LIAAGVDAARIVEISGLAATELRVPDIPDAPENRRIEVLMQ 337


>gi|82702437|ref|YP_412003.1| flagellar motor protein MotB [Nitrosospira multiformis ATCC 25196]
 gi|82410502|gb|ABB74611.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 308

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 71/333 (21%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
           Q  I+ KKV    +  + G WKI YADF+T +MAFFL+MW++ +      + I  YF  P
Sbjct: 5   QHRIVIKKVR-RQSQGHGGQWKIAYADFVTAMMAFFLLMWLLGSATRAQLQGISDYFMKP 63

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                          ++ PER                      IGS ++    Q      
Sbjct: 64  L--------------ESVPERD---------------------IGSGDRTSLIQ------ 82

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS-KEKILAMKRK- 189
                       K+ + RD +      + TD++ S          PLS +   L ++R+ 
Sbjct: 83  ---------GGGKDLMRRDGQ-----VQKTDVDSSEK--------PLSLRAAQLELERRD 120

Query: 190 -KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            +RL+DL +++   + S        K +L + T  G+ I IID +N PMF  + +   P 
Sbjct: 121 ARRLEDLKRRLERLIESNPTMHEFRKQLLLDITTEGLRIQIIDDKNRPMFALARAELEPH 180

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVS 305
           T  +LQK+G VL      +S+ GHTD++P+ +  ++  NW LS DRA ++ + L+  G++
Sbjct: 181 TREILQKLGSVLNEMPNKLSLSGHTDSTPYASGEKNYSNWELSADRANASRRELILGGMN 240

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E +I ++ G +   L   +DP N  NRRI I+V
Sbjct: 241 EQKIMRVVGLSSAVLFDRNDPTNPVNRRISIIV 273


>gi|325981670|ref|YP_004294072.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531189|gb|ADZ25910.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 312

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 68/329 (20%)

Query: 15  IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
           I+IK  KKVA     ++ G+WKI YADF+T +MAFFL+MW++ ++     + I +YF  P
Sbjct: 10  IVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSSTQSQLEGISEYFKTP 66

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                M  S                    SI E    NS+ +K G T+  +Q+ +++N  
Sbjct: 67  LKIAFMGGS--------------------SIGES---NSL-IKGGGTDLTRQHGQVKNGE 102

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              ++    +  K            + +  +LEK         L  L K+   A++   +
Sbjct: 103 IITNDKANKQAIKV-----------IKERIELEK---------LEGLKKKIEEAIQANPQ 142

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           LQ  A ++                L + T  G+ I I+D++N PMF    +   P T  +
Sbjct: 143 LQRFANQL----------------LLDITTDGLRIQIVDEQNRPMFALGRAELQPYTRTI 186

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG++L   T  IS+ GHTDA PF   +    NW LS DRA ++ + L+  G+  +++
Sbjct: 187 LREIGKMLNEVTNKISLSGHTDAKPFPSGDKGYSNWELSADRANASRRELIVGGMDANKM 246

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            ++ G +   L    DP+N  NRRI I+V
Sbjct: 247 LQVVGLSSAVLFDKDDPLNPINRRISIVV 275


>gi|134294329|ref|YP_001118064.1| flagellar motor protein MotB [Burkholderia vietnamiensis G4]
 gi|134137486|gb|ABO53229.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 338

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 156/330 (47%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSATPVQLKGIAEYFNTPLQA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI     ++   +  G+T +      L + +   
Sbjct: 69  ALFGSG----------DRSSQ---DSSIINGGGRDLSSVDAGTTRRTDGSTSLADRV--- 112

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                           ++KG+D  ++   + +I + E   L  L  + + A++    L+ 
Sbjct: 113 ----------------AKKGEDTAQA-QAQGAIERREQARLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS+   P    +L++
Sbjct: 156 FRQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSNNVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|167571659|ref|ZP_02364533.1| flagellar motor protein MotB [Burkholderia oklahomensis C6786]
          Length = 340

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 53/334 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   ++ G+T +      L + I
Sbjct: 65  PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSIEAGATRRTDGSTSLADRI 112

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              S  +     + SL R                                     + + R
Sbjct: 113 VKKSEDEALAQAQGSLER-------------------------------------REQAR 135

Query: 192 LQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L DL  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS    P    
Sbjct: 136 LHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRD 195

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E +
Sbjct: 196 ILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAK 255

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 256 VLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|186477722|ref|YP_001859192.1| flagellar motor protein MotB [Burkholderia phymatum STM815]
 gi|184194181|gb|ACC72146.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 369

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 56/335 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKGGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P    L    +   D    P        D+S D+    +  D   GSTN+      
Sbjct: 61  YFNQPLKITLWGGDRSAVDSSQIPGGGR----DISTDKDGITHQTD---GSTNR------ 107

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                        +EH        + +  D      L+ ++ + E               
Sbjct: 108 -------------AEHT-------AARADDQALQ-QLQGAVERREQV------------- 133

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               RL DL  K+ + + +  V     + +  ++T  G+ I I+D +  PMF  + +I  
Sbjct: 134 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLQGLRIEIVDTQKRPMFATAQAIVQ 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +LQ IG  L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMHDILQAIGNTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E ++ ++ G A  +    +DP++  NRRI I+V
Sbjct: 250 MDEAKVLRVLGLASTQNLNKADPLDPENRRISIIV 284


>gi|167564510|ref|ZP_02357426.1| flagellar motor protein MotB [Burkholderia oklahomensis EO147]
          Length = 340

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 155/334 (46%), Gaps = 53/334 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   ++ G+T +      L + I
Sbjct: 65  PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSIEAGATRRTDGSTSLADRI 112

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              S  +     + SL R                              +E++       R
Sbjct: 113 VKKSEDEALAQAQGSLER------------------------------REQV-------R 135

Query: 192 LQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L DL  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS    P    
Sbjct: 136 LHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRD 195

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E +
Sbjct: 196 ILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAK 255

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 256 VLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|190572619|ref|YP_001970464.1| flagellar motor protein MotB [Stenotrophomonas maltophilia K279a]
 gi|190010541|emb|CAQ44150.1| putative chemotaxis protein [Stenotrophomonas maltophilia K279a]
          Length = 312

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 65/334 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN   +I+++        ++ GSWK+ YADF+T +MAFFLV+W++  T+ + + AI +YF
Sbjct: 3   ENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P      T + G+      P  +S + I L         + D+  G++N   Q Q+
Sbjct: 63  RNPSPLSGQNATPAPGMAG----PGGASTSMIKLG-------GATDISRGNSNDPFQNQK 111

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               +    + QQ         RD ++ + L K  +L+++I++ +   L P   +     
Sbjct: 112 --EAVPQPVDQQQ---------RDKQQLEALMK--ELQEAISRSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD  S+   P
Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L ++ E L H    IS+ GHTD + + + AR   NW LS DRA +A + L+  G+
Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALVDGGL 242

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + +I+++ G +   L   +DP N  NRRI I+V
Sbjct: 243 EDSKITRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|167587857|ref|ZP_02380245.1| flagellar motor protein MotB [Burkholderia ubonensis Bu]
          Length = 340

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 54/331 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLQA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI     ++   +  GST +      L + +   
Sbjct: 69  ALFGSG----------DRSSQ---DSSIINGGGRDISSVDAGSTRRTDGSTSLADRVAKK 115

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           ++ +     + SL R                                     + + RL D
Sbjct: 116 NDDEAQAQAQGSLER-------------------------------------REQARLHD 138

Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS    P    +L+
Sbjct: 139 LQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILR 198

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ +
Sbjct: 199 EIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDESKVLR 258

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A  +    +DP++  NRRI ++V +R+
Sbjct: 259 VLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|300312289|ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1]
 gi|300075074|gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 60/329 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II K++      ++ G+WKI YADF+T +MAFFL+MW++ +T       I +YF    K 
Sbjct: 9   IIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLKV 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M    G  D          N +     + +T+    L+ G T+   + Q L+       
Sbjct: 69  AMAGGSGSGD---------ANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQ------ 113

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
              Q E  K   TR  E    L K+ D   ++ + +N  L                    
Sbjct: 114 --AQQELEKMERTRLEELKSRLEKAIDSNPTLKQFKNQLL-------------------- 151

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                                 + T  G+ I I+D++N PMF  +S+   P T  +L +I
Sbjct: 152 ---------------------IDITSEGLRIQIVDEKNRPMFALASAQLQPYTKEILHEI 190

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G  L      IS+ GHTDA+P+    +   NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 191 GRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMDESKVLRVV 250

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G +   L    DP N  NRRI I+V +++
Sbjct: 251 GLSSAVLLDKEDPFNPINRRISIIVMNKK 279


>gi|253998520|ref|YP_003050583.1| flagellar motor protein MotB [Methylovorus sp. SIP3-4]
 gi|313200598|ref|YP_004039256.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|253985199|gb|ACT50056.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
 gi|312439914|gb|ADQ84020.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 316

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 155/338 (45%), Gaps = 66/338 (19%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           E+ + II+K  KKVA     ++ G+WKI YADF+T +MAFFL+MW++ +T   T + I +
Sbjct: 3   EDTKPIIVKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKATLEGISE 59

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YF  P    L          Q  P  ++ + +     + +TK    +K            
Sbjct: 60  YFKMPLKVAL----------QGGPSVAASDSVLKGGGKDLTKKQAQVK------------ 97

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                                  D  KGK   K  D+     K+    L    +EK+  +
Sbjct: 98  ---------------------PVDGPKGKQ--KEVDI-----KDAKTALEKAEQEKLAEL 129

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K K    + A   S+TLS        K +L + T  G+ I I+D++N PMF  S +   P
Sbjct: 130 KLK---IEEAIDASATLS-----KFKKQLLIDITSEGLRIQIVDEQNRPMFASSKAELQP 181

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L +IG +L      IS+ GHTDA P+   +    NW LS DRA ++ + L+  G+
Sbjct: 182 YAKQILHEIGSMLNDVPNKISLSGHTDAVPYPTGDKGYSNWELSSDRANASRRELVAGGM 241

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G +   L    +P+N  NRRI I++ +++
Sbjct: 242 DESKLLRVVGLSSASLFDKENPLNPVNRRISIIIMNKK 279


>gi|330815146|ref|YP_004358851.1| MotB [Burkholderia gladioli BSR3]
 gi|327367539|gb|AEA58895.1| MotB [Burkholderia gladioli BSR3]
          Length = 361

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  YFN P   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L              +RSS    D SI   I     D+    T       R  +    L
Sbjct: 69  ALFGNG----------DRSSH---DSSI---INGGGSDI----TRSDSGTTRRTDGSTML 108

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           +N            R ++ G+D     D   S +++E   L  L  + + A++    L+ 
Sbjct: 109 AN------------RLTQAGRDDEHDVD-RGSQDRQEQVRLHDLQIKLMAAIEANPVLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T TG+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLTGLRIEIVDTQKRPMFALSSDAVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIVMQGHTDAVPYSGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +G A  +    +DP++  NRRI ILV +R+
Sbjct: 260 TGLASTQNLNKADPLDPENRRISILVLNRK 289


>gi|254525153|ref|ZP_05137208.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14]
 gi|219722744|gb|EED41269.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14]
          Length = 320

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 65/334 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +I+++        ++ GSWK+ YADF+T +MAFFLV+W++ +T    + AI +YF
Sbjct: 3   ETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P      T + G+      P  +S + I L         + D+  G++N   Q Q+
Sbjct: 63  RNPSPLSGKSATPAPGMAG----PGGASTSMIKLG-------GATDVSRGNSNDPFQNQK 111

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               +    + QQ         RD ++ + L K  +L+++I+K +   L P   +     
Sbjct: 112 --EAVPQPLDQQQ---------RDKQQLEQLMK--ELQEAISKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD  S+   P
Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L ++ E L H    IS+ GHTD + + + AR   NW LS DRA +A + L+  G+
Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALIDGGL 242

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + +I+++ G +   L   +DP N  NRRI I+V
Sbjct: 243 EDSKITRVVGLSSSVLFDKADPQNPINRRISIVV 276


>gi|194364216|ref|YP_002026826.1| flagellar motor protein MotB [Stenotrophomonas maltophilia R551-3]
 gi|194347020|gb|ACF50143.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 318

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 65/334 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +I+++        ++ GSWK+ YADF+T +MAFFLV+W++ +T    + AI +YF
Sbjct: 3   ETKPTVIVRRVRKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P   +  T + G+      P  +S + I L         + D+  GS+N   Q Q+
Sbjct: 63  RNPSPLVGSSATPAPGMAG----PGGASTSMIKLG-------GATDISRGSSNDPFQNQK 111

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               +    + QQ         RD ++ + L K  +L+++I++ +   L P   +     
Sbjct: 112 --EAVPQPVDQQQ---------RDKQQLEALMK--ELQEAISRSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD  S+   P
Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L ++ E L H    IS+ GHTD + + + AR   NW LS DRA +A + L+  G+
Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALIDGGL 242

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + +I+++ G +   L   +DP N  NRRI I+V
Sbjct: 243 EDSKITRVVGLSSSVLFDKADPQNPINRRISIVV 276


>gi|91776291|ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT]
 gi|91710278|gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 308

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 60/329 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +YF    K 
Sbjct: 8   IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISEYFKTPLKV 67

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M    G                  + D  +     D+    T ++ Q +R E+      
Sbjct: 68  AMQGGSGAG----------------ASDSVLKGGGNDM----TKKQGQIRRAEDI----- 102

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                         D+ K  DL       K+  +E       ++K ++  +K  KR  + 
Sbjct: 103 --------------DARKKPDL-------KTAQEE-------VAKAELEKLKELKRRIEE 134

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A   S TL         K +L + T  G+ I I+D++N PMF  S +   P    +L +I
Sbjct: 135 AIDASETLR-----QFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQPYARQILHEI 189

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G++L      IS+ GHTDA+P+ +  R   NW LS DRA ++ + L+  G+ E+++ ++ 
Sbjct: 190 GQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGGMKEEKLLRVV 249

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G +   L    +P+N  NRRI I++ +++
Sbjct: 250 GLSSAVLFDKDNPLNPINRRISIIIMNKK 278


>gi|254194681|ref|ZP_04901112.1| chemotaxis protein MotB [Burkholderia pseudomallei S13]
 gi|169651431|gb|EDS84124.1| chemotaxis protein MotB [Burkholderia pseudomallei S13]
          Length = 340

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   L  G+T +           
Sbjct: 65  PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                +  S H    + + SE    L ++   + S+ + E   L  L  + + A++    
Sbjct: 102 -----TDGSAHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS    P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|53720918|ref|YP_109904.1| flagellar motor protein MotB [Burkholderia pseudomallei K96243]
 gi|167817882|ref|ZP_02449562.1| flagellar motor protein MotB [Burkholderia pseudomallei 91]
 gi|52211332|emb|CAH37321.1| chemotaxis protein MotB [Burkholderia pseudomallei K96243]
          Length = 340

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   L  G+T +           
Sbjct: 65  PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                +  S H    + + SE    L ++   + S+ + E   L  L  + + A++    
Sbjct: 102 -----TDGSTHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS    P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|146305660|ref|YP_001186125.1| flagellar motor protein MotB [Pseudomonas mendocina ymp]
 gi|145573861|gb|ABP83393.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 329

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 67/332 (20%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V  +   ++ G+WKI +ADF T +MAFFLVMW++++   + KKAI  YF
Sbjct: 2   ENNQPIIVKR-VKKNAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                            Q+P          +   E  + +++DL  G +      + L  
Sbjct: 61  -----------------QDP----------IGFTESASPHAIDL--GGSPTPAPDRTLNP 91

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            I                       +DL +S D++   ++ E+        +K+   + +
Sbjct: 92  EI-----------------------QDLTESRDVDIDADQVESL------ADKLERERLE 122

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ+L  K+               +LFE T+ G+ I I+D  N PMF   S+   P   
Sbjct: 123 LVLQELQNKVEENPE---LQRFKDQILFEITQDGLRIQIVDAENRPMFALGSANLQPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQVLMKSGVSE 306
            +L  + + +      ISI GHTDA PF  + R    NW LS +RA +A + L+  G ++
Sbjct: 180 DILLAMADTIRAVPNKISISGHTDAKPF--VGRGDFGNWELSANRANAARRALIAGGYAD 237

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++++++ G+A   L   +DP N  NRRIDI+V
Sbjct: 238 EQVARVVGYASSALFDRNDPFNPVNRRIDIVV 269


>gi|166713570|ref|ZP_02244777.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 385

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P     M  S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++  ++S ++D ++ + L +  +L+++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L ++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|329890064|ref|ZP_08268407.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568]
 gi|328845365|gb|EGF94929.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 145/331 (43%), Gaps = 50/331 (15%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           ND+ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF 
Sbjct: 4   NDRPILIKKVKKVAGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 63

Query: 71  PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P   +  T  S GI    +                    +S   K   +N       +E 
Sbjct: 64  PANVSASTSGSGGILGGTS------------------LGDSEGAKGAGSNAV-----IEQ 100

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 ++ Q     ++L   SE          L   I + E       ++    AM+  
Sbjct: 101 LAPEAPDAPQEAGQNSNLASASEAA--------LRAEIARREAADFASAAESLRQAMQSM 152

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L +L+K++                + + T  G+ I ++DQ    MF+  SS P P   
Sbjct: 153 PELAELSKQL----------------IIDQTPEGLRIQLVDQEGRSMFENGSSRPNPRAQ 196

Query: 250 VVLQKIGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           ++L+ + +V+      I+I GHT   A   R  +  +W LS  RA ++   L  +GVS D
Sbjct: 197 LLLRAVAKVINQLPNRITITGHTSAVAGSSRASSPGDWPLSSARADASRLTLQSAGVSSD 256

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           R+  ++G A        DP  + NRRI I++
Sbjct: 257 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVL 287


>gi|76809964|ref|YP_331496.1| flagellar motor protein MotB [Burkholderia pseudomallei 1710b]
 gi|126438376|ref|YP_001060851.1| flagellar motor protein MotB [Burkholderia pseudomallei 668]
 gi|126452767|ref|YP_001068158.1| flagellar motor protein MotB [Burkholderia pseudomallei 1106a]
 gi|134281430|ref|ZP_01768138.1| chemotaxis protein MotB [Burkholderia pseudomallei 305]
 gi|167721693|ref|ZP_02404929.1| flagellar motor protein MotB [Burkholderia pseudomallei DM98]
 gi|167740671|ref|ZP_02413445.1| flagellar motor protein MotB [Burkholderia pseudomallei 14]
 gi|167826260|ref|ZP_02457731.1| flagellar motor protein MotB [Burkholderia pseudomallei 9]
 gi|167847768|ref|ZP_02473276.1| flagellar motor protein MotB [Burkholderia pseudomallei B7210]
 gi|167896356|ref|ZP_02483758.1| flagellar motor protein MotB [Burkholderia pseudomallei 7894]
 gi|167904730|ref|ZP_02491935.1| flagellar motor protein MotB [Burkholderia pseudomallei NCTC 13177]
 gi|167913010|ref|ZP_02500101.1| flagellar motor protein MotB [Burkholderia pseudomallei 112]
 gi|167920947|ref|ZP_02508038.1| flagellar motor protein MotB [Burkholderia pseudomallei BCC215]
 gi|217423951|ref|ZP_03455451.1| chemotaxis protein MotB [Burkholderia pseudomallei 576]
 gi|226193238|ref|ZP_03788848.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9]
 gi|237814248|ref|YP_002898699.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346]
 gi|242314580|ref|ZP_04813596.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b]
 gi|254183890|ref|ZP_04890481.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655]
 gi|254186366|ref|ZP_04892883.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237]
 gi|254261280|ref|ZP_04952334.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a]
 gi|254298791|ref|ZP_04966242.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e]
 gi|42766714|gb|AAS45440.1| MotB [Burkholderia pseudomallei]
 gi|76579417|gb|ABA48892.1| MotB [Burkholderia pseudomallei 1710b]
 gi|126217869|gb|ABN81375.1| chemotaxis protein MotB [Burkholderia pseudomallei 668]
 gi|126226409|gb|ABN89949.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106a]
 gi|134247097|gb|EBA47183.1| chemotaxis protein MotB [Burkholderia pseudomallei 305]
 gi|157808693|gb|EDO85863.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e]
 gi|157934051|gb|EDO89721.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237]
 gi|184214422|gb|EDU11465.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655]
 gi|217393014|gb|EEC33036.1| chemotaxis protein MotB [Burkholderia pseudomallei 576]
 gi|225934838|gb|EEH30815.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9]
 gi|237506677|gb|ACQ98995.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346]
 gi|242137819|gb|EES24221.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b]
 gi|254219969|gb|EET09353.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a]
          Length = 340

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   L  G+T +           
Sbjct: 65  PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                +  S H    + + SE    L ++   + S+ + E   L  L  + + A++    
Sbjct: 102 -----TDGSTHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS    P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|238025855|ref|YP_002910086.1| flagellar motor protein MotB [Burkholderia glumae BGR1]
 gi|124695899|gb|ABN14293.1| MotB [Burkholderia glumae BGR1]
 gi|124695929|gb|ABN14297.1| MotB [Burkholderia glumae BGR1]
 gi|237875049|gb|ACR27382.1| MotB [Burkholderia glumae BGR1]
          Length = 349

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 54/327 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  YFN P   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L           N    S  + I       IT++       +        RL       
Sbjct: 69  ALFG---------NGDRSSHDSSIIQGGGSDITRSDAGTTRRTDGTTMLASRL------- 112

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                           ++KG+D    TD              P S+++      + RL D
Sbjct: 113 ----------------AQKGRDDLHDTD--------------PGSQDR----AEQARLHD 138

Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L  K+ + + +  V     + +  ++T +G+ I I+D +  PMF  +S++  P    +L+
Sbjct: 139 LQIKLMAAIEANPVLRQFKQQIRIDSTLSGLRIEIVDTQKRPMFATASNMVEPYMRDILR 198

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ + ++ +
Sbjct: 199 EIGKTLNEVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELISGGMDDAKVLR 258

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           ++G A  +    +DP +  NRRI ILV
Sbjct: 259 VTGLASTQNLNKADPFDPENRRISILV 285


>gi|326386939|ref|ZP_08208553.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208619|gb|EGD59422.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 277

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 64/327 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KK+ +    ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +K I  YF P    
Sbjct: 13  IIVKKITVVAAGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTERQRKGIADYFTP---T 69

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           L+   +G                        +  S  L  GS+        L +   Y  
Sbjct: 70  LVKTRQG------------------------SAGSYGLLGGSS--------LTDADTYQF 97

Query: 136 NSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            + Q+     ++ RD+  G KD    +  +++   +E        K+K+ A    ++L+ 
Sbjct: 98  RAGQTGTKTLTIPRDATGGAKD--GGSKAKRTAALQERL------KQKLQA---SEQLRQ 146

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LAK++  T+                T  GI + ++D  N  MF   ++I  P+ + +++ 
Sbjct: 147 LAKQVHLTM----------------TPDGIRLDLLDDANFSMFRLGTTILTPQAVELIRA 190

Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I + +A     +++RGHTD+  ++     +NW LS  RA +  Q L++ GV E R  +I 
Sbjct: 191 IAQSIAPDQNGLTVRGHTDSLQWKPGDPANNWSLSAGRAEATRQALLRFGVPEKRFRRIE 250

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
           G A     I  +P +  NRR+ IL+ D
Sbjct: 251 GVADQEPLITDNPADPRNRRMSILLMD 277


>gi|58580310|ref|YP_199326.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188578754|ref|YP_001915683.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424904|gb|AAW73941.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523206|gb|ACD61151.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P     M  S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++  ++S ++D ++ + L +  +L+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L ++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|254473486|ref|ZP_05086883.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062]
 gi|211957602|gb|EEA92805.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062]
          Length = 573

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 3/149 (2%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K+L  +A  + + L GL     ++   F  +R G+LI I+D  +  MF   SS P P+ +
Sbjct: 423 KQLVSIANSVGAALDGLKTGASIE---FTHSRDGVLIRIMDNDDFGMFAVGSSEPHPDVV 479

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             ++KI +VL      I IRGHTDA PF++   DNWRLS  RA+ AY +L++ G+ E+RI
Sbjct: 480 KAMEKIAKVLEEENGEIVIRGHTDARPFKSKRNDNWRLSTARAHMAYFMLVRGGLDENRI 539

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
             I G+A  RLK   +P    NRRI+I++
Sbjct: 540 VGIEGYADRRLKDVEEPYAPQNRRIEIML 568



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          E  + II++++ +   T    G WKI YADF T +MAFFL+MW++NA+D+ +++ I  YF
Sbjct: 4  EPQELIIVRRRNSDMITTPKSGVWKIAYADFATAMMAFFLLMWLVNASDEASQRGIASYF 63

Query: 70 NPFGKNLMTAS-KGIFD-EQNPPERSSQNKID 99
          NP      TAS KGI D E+ P    S   +D
Sbjct: 64 NPIKLVDSTASPKGIRDPEETPSPTDSDEGVD 95


>gi|209515722|ref|ZP_03264585.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209503749|gb|EEA03742.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 336

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  +     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 3   SKDKDRAIVVKR-ASPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 61

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 62  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 97

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +  +     +S ++EH  +    DS K         L+ ++ ++E               
Sbjct: 98  VTRSTD--GSSSRAEHTASHNNDDSVK--------QLQGALERQEQV------------- 134

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +  +  
Sbjct: 135 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVE 190

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA P+   +    NW LS DRA ++ + L+  G
Sbjct: 191 PYMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGDKGYSNWELSADRANASRRELIAGG 250

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 251 MDEAKVMRVLGLASAQNLNKADPLDPENRRISIIVLNRK 289


>gi|212637803|ref|YP_002314328.1| MotB protein [Shewanella piezotolerans WP3]
 gi|212559287|gb|ACJ31741.1| MotB protein [Shewanella piezotolerans WP3]
          Length = 330

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 44/324 (13%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           I+I++K      P + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY    G 
Sbjct: 8   IVIRRKKRTKAKPGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLK--GD 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
              T S   FD    P     + ID     +I      L   ST   +    + N+I   
Sbjct: 66  LYSTGSINPFDLSRSP-----SLIDF--QGNIAIQQAVLPATSTGVDRSGPAMHNHI--- 115

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                              GKD  K+      I  E N  +P          + + +L+ 
Sbjct: 116 -----------------PLGKDNVKA-----GIGPELNSLVPG-------KFETQAQLEF 146

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA++I   ++ +  +  V+    +    G+ I + D  N  MF + SS   P    +L  
Sbjct: 147 LAREIEQVITDVSMNANVE---LQVVPQGVRILMHDNINQFMFTRGSSNMKPYFEDLLMA 203

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +G +L      +SI GHTD+SP+      NW LS  RA  A +VL  SGV  D++ +++G
Sbjct: 204 LGPILGKVENKMSISGHTDSSPYAGKTFTNWELSSKRALLARRVLEYSGVQRDQVIQVTG 263

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A     IA DP  +ANRRI++LV
Sbjct: 264 MADQAPYIADDPAAAANRRIEMLV 287


>gi|167838309|ref|ZP_02465168.1| flagellar motor protein MotB [Burkholderia thailandensis MSMB43]
          Length = 488

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V+     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  YFN 
Sbjct: 6   DQAIIVKR-VSQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   ++ G+T       RL +  
Sbjct: 65  PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSVEAGAT-------RLTDGS 105

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            +L++    +   ++L +              + S+ + E   L  L  + + A++    
Sbjct: 106 THLADRVAKKSEDDALAQ-------------AQGSLERREQVRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS+   P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSNAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|253996630|ref|YP_003048694.1| flagellar motor protein MotB [Methylotenera mobilis JLW8]
 gi|253983309|gb|ACT48167.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 60/314 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNLMTASKGIFDEQNPP 90
           +WKI YADF+T +MAFFL+MW++ +T    K+ I E +  P                   
Sbjct: 25  AWKIAYADFVTAMMAFFLLMWLLGSTSKAQKEGISEYFKTPL------------------ 66

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                 K+ L   + +  +   +K G      + Q     +      Q++   K      
Sbjct: 67  ------KVALMGGDSVGASDTLIKGGGGKDMTKKQGQVKPVDGPPGKQKAVDIK------ 114

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                      D + ++ K E   L  L KEKI     +K ++D     S TLS      
Sbjct: 115 -----------DAKAALEKAEEQKLE-LLKEKI-----EKSIED-----SPTLS-----K 147

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             K +L + T  G+ I I+D++N PMF+ + +   P    +L++IG++L   T  IS+ G
Sbjct: 148 FKKQLLIDITTEGLRIQIVDEQNRPMFESAKAEMQPYAKQILKEIGQMLNGVTNKISLSG 207

Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTDA+P+ +  +   NW LS DRA ++ + L+  G+ E ++ ++ G +   L    DP+N
Sbjct: 208 HTDAAPYSSGEKGYSNWELSSDRANASRRELIAGGMDEAKLLRVVGLSSVSLFDKDDPLN 267

Query: 329 SANRRIDILVEDRQ 342
             NRRI I+V ++Q
Sbjct: 268 PINRRISIIVMNKQ 281


>gi|90418368|ref|ZP_01226280.1| putative chemotaxis protein motB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338040|gb|EAS51691.1| putative chemotaxis protein motB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 413

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 75/116 (64%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ ISI D   + MF+  S+ P P+ + ++++I  VL+     +SIRGHTD+ PFR+   
Sbjct: 293 GVTISIADDMMSGMFEVGSARPTPQVVAMMERIASVLSKQPGNVSIRGHTDSRPFRSAQY 352

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           DNWRLS  RA+ AY +L + G+ EDR+  I G A    KIA DP  +ANRRI+IL+
Sbjct: 353 DNWRLSTARAHMAYYMLARGGLDEDRVKAIEGVADRAPKIADDPEAAANRRIEILL 408



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 5  GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
          G  + +  + II++++    +  ++ G WKI +ADFMT +MAFFLVMW+  A+D  T+K 
Sbjct: 6  GAGHLDRQEIIIVRRRGGHGEEAHHGGVWKIAFADFMTAMMAFFLVMWLTQASDMATRKQ 65

Query: 65 IEQYFNPFGKN-LMTASKGI 83
          + QYFNP   N    A++G+
Sbjct: 66 VAQYFNPIRLNDASPATRGV 85


>gi|118589971|ref|ZP_01547375.1| flagellar motor protein MotB [Stappia aggregata IAM 12614]
 gi|118437468|gb|EAV44105.1| flagellar motor protein MotB [Stappia aggregata IAM 12614]
          Length = 500

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 16/157 (10%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           ++LA      L++ A +I+ T  G                 G LIS+ D +N  MF   S
Sbjct: 355 EVLAQTEGTVLEETASQITVTREG----------------EGALISLTDDQNFGMFAIGS 398

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           + P PE + +L++IG+++A +   I I+GHTDA PFR+   DNWRLS  RA+ A  +L +
Sbjct: 399 AEPRPELVKLLERIGKIVADTPGQIVIKGHTDARPFRSKTYDNWRLSSARAHMALYMLSR 458

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            GV +DR +++ G+A   LK+ SDP  ++NRRI+I +
Sbjct: 459 GGVGKDRFNRVEGYADKDLKVPSDPFAASNRRIEIYL 495



 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          ++ +I+++K + +D     G WKI YADFMT LMAFFLVMW+IN TDD  ++ + QYFNP
Sbjct: 7  NEIVIVRRKNSWEDDQTPHGVWKIAYADFMTALMAFFLVMWLINVTDDSVRRGVAQYFNP 66


>gi|84622281|ref|YP_449653.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366221|dbj|BAE67379.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 385

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P     M  S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++  ++S ++D ++ + L +  +L+++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L ++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVEILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|167620832|ref|ZP_02389463.1| flagellar motor protein MotB [Burkholderia thailandensis Bt4]
          Length = 348

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   +  G+T       RL +  
Sbjct: 65  PLKAAIFGSG---------DRSAD---DSSIIKGGGRDISSVDAGTT-------RLTDG- 104

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                   S H    + + SE    L ++   + S+ + E   L  L  + + A++    
Sbjct: 105 --------STHLAERVAKKSEDDA-LAQA---QGSLERREQIRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS    P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|83721243|ref|YP_443678.1| flagellar motor protein MotB [Burkholderia thailandensis E264]
 gi|167582718|ref|ZP_02375592.1| flagellar motor protein MotB [Burkholderia thailandensis TXDOH]
 gi|83655068|gb|ABC39131.1| chemotaxis protein MotB [Burkholderia thailandensis E264]
          Length = 344

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 51/333 (15%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN 
Sbjct: 6   DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K  +  S          +RS+    D SI +   ++   +  G+T       RL +  
Sbjct: 65  PLKAAIFGSG---------DRSAD---DSSIIKGGGRDISSVDAGTT-------RLTDG- 104

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                   S H    + + SE    L ++   + S+ + E   L  L  + + A++    
Sbjct: 105 --------STHLAERVAKKSEDDA-LAQA---QGSLERREQIRLHDLQVKLMAAIEANPT 152

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+   ++I                  ++T  G+ I I+D +  PMF  SS    P    +
Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G+ E ++
Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|110632645|ref|YP_672853.1| flagellar motor protein MotB [Mesorhizobium sp. BNC1]
 gi|110283629|gb|ABG61688.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 452

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 79/134 (58%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           L  + +   V       G+LIS+ D     MF   S++P    +  ++KIG+ LA     
Sbjct: 316 LNGEGLASSVTVSAGEEGVLISVTDDIRNGMFPVGSAVPERALVGAMEKIGKTLAGQPGT 375

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I I GHTDA PFR+   DNWRLS  RA++A  +L++ G+ E RI++++GFA  +LK    
Sbjct: 376 IRIHGHTDARPFRSDTYDNWRLSTARAHAAQYMLIRGGLDETRITEVAGFADRKLKEPES 435

Query: 326 PMNSANRRIDILVE 339
           P+  ANRRI+IL+E
Sbjct: 436 PLADANRRIEILLE 449



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          +++   + II+++    +D+ ++ G WKI +ADFMT +M FFLVMW+INA ++ T+ A+ 
Sbjct: 6  EDERQPEIIIVRRGGDDEDSEHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTRAALA 65

Query: 67 QYFNP 71
           YFNP
Sbjct: 66 SYFNP 70


>gi|295678083|ref|YP_003606607.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295437926|gb|ADG17096.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 336

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 56/335 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 3   SKDKDRAIVVKRS-APRKHGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 61

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 62  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 97

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +       S    S   + + +R++E         D  K +  E             L  
Sbjct: 98  VTR-----STDGSSNRAERTASRNNE---------DSVKQLQGE-------------LER 130

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +  +  
Sbjct: 131 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVE 190

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA P+    +   NW LS DRA ++ + L+  G
Sbjct: 191 PYMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELVAGG 250

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E ++ ++ G A  +    +DP++  NRRI I+V
Sbjct: 251 MDEAKVMRVLGLASTQNLNKADPLDPENRRISIIV 285


>gi|197105150|ref|YP_002130527.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1]
 gi|196478570|gb|ACG78098.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1]
          Length = 301

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            DQ I+IKK        ++ G+WK+ YADF+T +MAFFL+MW+IN T  + K+ I  YF 
Sbjct: 4   GDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPEQKQGIADYFA 63

Query: 71  PFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P       + + GI          S++     I E +  +S +   G      +   LE 
Sbjct: 64  PASVSQTSSGAGGILGGTALGTDGSKSAGASPIIEELAPDSRNPNDGKNRDASKSDSLE- 122

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                  +  ++  +++L +                   +EE  F          A   +
Sbjct: 123 -------AASTQALRDALQK-------------------REEAAF-------ASAAQSLR 149

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + LQD+ +             + K ++ + T  G+ I ++DQ    MF+  SS P     
Sbjct: 150 QSLQDMPELA----------ELSKNIIIDQTPEGLRIQLVDQEGRSMFNAGSSQPNDRAK 199

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++L+ + +V+      +SI GHT A+   + A  +W LS  RA ++ ++L  SGV  DR+
Sbjct: 200 LLLRAVSKVINQLPNRVSIYGHTSANANGSRAESDWPLSAARADASRRILQGSGVDPDRV 259

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            ++SG A        DP  + NRRI I++
Sbjct: 260 YQVSGKAASEPLYPDDPTLAGNRRIAIVL 288


>gi|161523343|ref|YP_001578355.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616]
 gi|189351884|ref|YP_001947512.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616]
 gi|160340772|gb|ABX13858.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189335906|dbj|BAG44976.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
          Length = 338

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +Q +E           K  D      ++ ++ + E   L  L  + + A++    L+ 
Sbjct: 106 --TQLAERVA--------KPADDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|254250906|ref|ZP_04944224.1| Flagellar motor protein [Burkholderia dolosa AUO158]
 gi|124893515|gb|EAY67395.1| Flagellar motor protein [Burkholderia dolosa AUO158]
          Length = 339

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 54/331 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI +   ++   +  G+  +      L + +   
Sbjct: 69  ALFGSG----------DRSSQ---DSSIIDGGGRDLSSVDAGTLRRTDGTTNLADRVAKK 115

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           ++       + +L R                                     + + RL D
Sbjct: 116 NDEDAQAQAQGALER-------------------------------------REQARLHD 138

Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS    P    +L+
Sbjct: 139 LQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILR 198

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ +
Sbjct: 199 EIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLR 258

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A  +    +DP++  NRRI ++V +R+
Sbjct: 259 VLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|170694367|ref|ZP_02885521.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170140790|gb|EDT08964.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 335

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 61  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQ- 95

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                               +TR ++   +       E++++K     +  L  E  L  
Sbjct: 96  -------------------GVTRSTDGSNNRA-----ERTVSKSSEDSMKQLQGE--LER 129

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA+ +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DPM+  NRRI ++V +R+
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISVIVLNRK 288


>gi|163793054|ref|ZP_02187030.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159181700|gb|EDP66212.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 373

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 37/312 (11%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL++W++NAT ++ K  I  YF+P   +  T S           
Sbjct: 24  AWKVAYADFVTAMMAFFLLLWLLNATTEEQKMGISNYFDPTAISRSTRSG---------S 74

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
                   +++   +   S   +I ST Q  + Q +R E      S    S+  +N  +R
Sbjct: 75  GGLLGGTSITVPGALKTPSSPPQI-STPQVARPQAERTE------SLDPDSDDPENIESR 127

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL--SGLV 207
                  L    D E ++N+E          E+++  + +++ +D    I   +  S  +
Sbjct: 128 -------LGSREDEEGTVNQE--------VVEQLMREREQQQFEDAEAAIKEAIEKSPEL 172

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           +D + + +  ++T  G+ I +IDQ    +F   S+    +T  +L K+ EV+A     I 
Sbjct: 173 SD-VAESIKVDSTPEGLRIQLIDQERIALFPNGSASMYEQTRKLLIKVAEVVAALPNKIE 231

Query: 268 IRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           I GHTD+  F       NW LS DRA ++ +V++ +G+ E RI ++ G A     +  DP
Sbjct: 232 ITGHTDSKQFHPGSTYTNWDLSSDRANASRRVMVANGIDEKRIDEVVGKADRDPLVVEDP 291

Query: 327 MNSANRRIDILV 338
            +  NRRI I++
Sbjct: 292 SDPTNRRISIIL 303


>gi|289665512|ref|ZP_06487093.1| flagellar motor protein MotB [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668313|ref|ZP_06489388.1| flagellar motor protein MotB [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 385

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++  ++S ++D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTTEDSRSKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L    DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKIDPQNPINRRISIVV 276


>gi|148359858|ref|YP_001251065.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby]
 gi|296107908|ref|YP_003619609.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy]
 gi|148281631|gb|ABQ55719.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby]
 gi|295649810|gb|ADG25657.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 152/331 (45%), Gaps = 61/331 (18%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N  +  I +K+  +D  ++ GSWKI YADF+T +MAFFL+MW++ + +   K  I +YF 
Sbjct: 27  NTHYTPIIRKIKKNDHKHHGGSWKIAYADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF- 85

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  M                   K+ L   E +      +K G  N       +E+ 
Sbjct: 86  ---KQPM-------------------KMALFGGESMGNRKATIKGGGPN-------IED- 115

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               ++ Q S   K  +     K K++ +S   E  I K E      L  E  L+M++  
Sbjct: 116 ----TDGQVSATNKPLINESIAKDKEIVESQANE--IKKLEE-----LKSEINLSMEKDP 164

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L  L K++                L +    G+ I +ID +  PMFD  S    PE   
Sbjct: 165 SLAGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           +L  I ++L      I+I+GHTDA+P+ N   +   NW LS  RA +A + L+K+G+ E+
Sbjct: 209 ILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDEN 268

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++  ++G++   L    +P N  NRRI I+V
Sbjct: 269 KVMTVTGYSSTVLLDKKNPYNPENRRISIIV 299


>gi|221214225|ref|ZP_03587197.1| flagellar motor protein [Burkholderia multivorans CGD1]
 gi|221165880|gb|EED98354.1| flagellar motor protein [Burkholderia multivorans CGD1]
          Length = 338

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +Q +E           K  D      ++ ++ + E   L  L  + + A++    L+ 
Sbjct: 106 --TQLAERVA--------KPADDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|192359644|ref|YP_001981667.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107]
 gi|190685809|gb|ACE83487.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107]
          Length = 333

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 60/329 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q +IIKK+       ++  SWK+  ADFMT +MAFFL+MW++  T ++ KKAI QYF   
Sbjct: 6   QPLIIKKRKGRGHG-HHGSSWKVALADFMTAMMAFFLLMWLLGGTTEEEKKAISQYFQDP 64

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           G   +                            I +   DL + + ++  Q  + E +  
Sbjct: 65  GSQYV----------------------------IGEGGADLGLINQDRPIQQSQAEQDTM 96

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             +N+Q+       +T D            +++ + + EN                 ++L
Sbjct: 97  ETANTQEFTQDDQEVTEDK-----------IKREMERIEN-----------------EQL 128

Query: 193 QDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           Q+L +++ + ++ L  V   I   +L + T  G+ I I+D+   PMFD  S+     +  
Sbjct: 129 QELKEQLETEINQLDSVFQQIKDQILIDFTALGLRIQIVDKDQRPMFDVGSANLKTYSKE 188

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VLQ +  +L      ISI GHTDA+P+  N    NW LS DRA +A + +++    E+++
Sbjct: 189 VLQALAPILDKVPNKISITGHTDATPYGANATYTNWELSADRANAARRAMLEGSYPENKV 248

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
           + + G       +   P+   NRRI I+V
Sbjct: 249 ATVQGMGSVAPLLVDKPLEPINRRIAIIV 277


>gi|78064833|ref|YP_367602.1| flagellar motor protein MotB [Burkholderia sp. 383]
 gi|77965578|gb|ABB06958.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 338

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPSKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQMKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S          +RSSQ   D SI     ++   +  G+  +     +L   +  + 
Sbjct: 69  ALFGSG---------DRSSQ---DSSIINGGGRDLSSVDAGTLRRTDGTTQLAERLAKVG 116

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +    EH     +R  E+G             ++ E   L  L  + + A++    L+  
Sbjct: 117 D----EH-----SRSQEQGAQ-----------DRLEQARLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDNVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYSGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|172059245|ref|YP_001806897.1| flagellar motor protein MotB [Burkholderia ambifaria MC40-6]
 gi|171991762|gb|ACB62681.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 339

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S          +RSSQ   D SI   I     DL   S+      +R +       
Sbjct: 69  ALFGSG---------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT----- 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D       + + ++ E   L  L  + + A++    L+  
Sbjct: 106 ---------TSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++S NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDSENRRISVIVLNRK 289


>gi|30248076|ref|NP_840146.1| flagellar motor protein MotB [Nitrosomonas europaea ATCC 19718]
 gi|30179961|emb|CAD83956.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 307

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 62/315 (19%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WKI YADF+T +MAFFL+MW++ +T    K+ I +YF    K  +    G  D  +  
Sbjct: 25  GAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGIAEYFKTPLKVALLGGDGSGDSTSV- 83

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                 +K G  +  K+  +++ + F                  
Sbjct: 84  ----------------------VKGGGDDISKKIGQMKRSDF------------------ 103

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                DL +S D++     ++ + L  L K              L  +I  T++   A N
Sbjct: 104 ----DDLKRSIDMDALQALQDRFELEQLEK--------------LKARIEDTINSNPALN 145

Query: 211 IVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
             K  +L + T  G+ I I+D++N PMF    +     T ++L +IG++L      IS+ 
Sbjct: 146 KFKSQLLLDITSEGLRIQIVDEKNRPMFSMGRAELQSYTKMILHEIGKMLNDVGNKISLS 205

Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTDA+P+    +   NW LS DRA ++ + L+  G+S +++ ++ G +   +   +DP 
Sbjct: 206 GHTDATPYPTGEKSYSNWELSADRANASRRELIAGGMSPEKMLRVVGLSSAVMFDKADPF 265

Query: 328 NSANRRIDILVEDRQ 342
           +  NRRI I+V +++
Sbjct: 266 SPFNRRISIIVMNKK 280


>gi|221202105|ref|ZP_03575140.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221209087|ref|ZP_03582082.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221171082|gb|EEE03534.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221177899|gb|EEE10311.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 338

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +Q +E           K  D      ++ ++ + E   L  L  + + A++    L+ 
Sbjct: 106 --TQLAERVA--------KPTDDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|187925787|ref|YP_001897429.1| flagellar motor protein MotB [Burkholderia phytofirmans PsJN]
 gi|187716981|gb|ACD18205.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 335

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 61  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 96

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +         ++ SE   N     +  G     S D  K +  E             L  
Sbjct: 97  V---------TRSSEGSNNRAEHSAAHG-----SEDSIKQLQGE-------------LER 129

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA+ +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIGGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DPM+  NRRI I+V +R+
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288


>gi|54298209|ref|YP_124578.1| flagellar motor protein MotB [Legionella pneumophila str. Paris]
 gi|53751994|emb|CAH13420.1| hypothetical protein lpp2267 [Legionella pneumophila str. Paris]
          Length = 312

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 61/329 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q+  I +K+  +D  ++ GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF   
Sbjct: 29  QYTPIIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
            K  M                   K+ L   E +      +K G  N       +E+   
Sbjct: 86  -KQPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             ++ Q S   K  +     K K++ +S   E  I K E      L  E  L+M++   L
Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIIESQANE--IKKLEE-----LKSEINLSMEKDPSL 166

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L K++                L +    G+ I +ID +  PMFD  S    PE   +L
Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             I ++L      I+I+GHTDA+P+ N   +   NW LS  RA +A + L+K+G+ E+++
Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
             ++G++   L    +P N  NRRI I+V
Sbjct: 271 MTVTGYSSTVLLDKKNPYNPENRRISIIV 299


>gi|154253326|ref|YP_001414150.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157276|gb|ABS64493.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 63/336 (18%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N Q II+KK   +    ++ G+WKI YADF+T +MAFFL+MW+I+ T  + K+ +  YF 
Sbjct: 5   NQQPIILKKVKKVVHG-HHGGAWKIAYADFVTAMMAFFLLMWLISMTTPEQKQGLADYFA 63

Query: 71  PFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           P   +  T+  G       FDE+      ++ ++ ++I                      
Sbjct: 64  PSNVSRSTSGAGGIMGGTAFDEEGARMPGTKPQVVMTIS--------------------- 102

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                     + +Q            + +   L K    EKS   E N+     + E I 
Sbjct: 103 ----------TPAQPKSPETAEEKAAAAQVDKLLK----EKSARDERNFR---SAAESIR 145

Query: 185 -AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            AM+    L +L++ +                + + T  G+ I I+DQ    MF   ++ 
Sbjct: 146 QAMRENPDLAELSRNV----------------IIDETPEGLRIQIVDQDGRSMFPSGNAE 189

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS 302
           P   T  +++++  +L      +SI GHTDA+P        NW L+ DRA +  ++L  +
Sbjct: 190 PYERTRQLIEEVSNILIKLPNRVSISGHTDANPVEGRPGYSNWELTADRANATRRILAGA 249

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           G+S DRI ++ G A        DP  +ANRR+ I++
Sbjct: 250 GLSNDRIYQVIGKADSEPLFPEDPYMAANRRLSIVL 285


>gi|302383636|ref|YP_003819459.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302194264|gb|ADL01836.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 139/313 (44%), Gaps = 56/313 (17%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT-ASKGIFDEQNPP 90
           +WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF P   +  T  S GI       
Sbjct: 23  AWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFAPASVSQTTSGSGGILG----- 77

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                     S+ E  +K+S  + +           LE         QQ+         D
Sbjct: 78  --------GTSLGEDGSKSSGSMSV-----------LE---------QQAPEAPEDAPED 109

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--AMKRKKRLQDLAKKISSTLSGLVA 208
                +L  +++ E              S  + L  AM+R   L +L+K++         
Sbjct: 110 VGTNANLAAASEEELRQEIAAREAAEFASAAESLRQAMQRMPELAELSKQL--------- 160

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
                  + + T  G+ I ++DQ    MFD++S+ P     V+L+ I  V+      ISI
Sbjct: 161 -------IIDQTPEGLRIQLVDQEGRSMFDQNSARPNARAQVLLRAIAGVVNRLPNRISI 213

Query: 269 RGHTDA---SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            GHT A   S   ++A D W LS +RA ++  +L  +GV  DR+  ++G A        D
Sbjct: 214 SGHTSAVAGSGRASVATD-WPLSANRADASRAILQAAGVDADRVYSVAGKAGSDPLYPDD 272

Query: 326 PMNSANRRIDILV 338
           P  + NRRI I++
Sbjct: 273 PSLAGNRRIAIVL 285


>gi|91785660|ref|YP_560866.1| flagellar motor protein MotB [Burkholderia xenovorans LB400]
 gi|91689614|gb|ABE32814.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 335

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 56/335 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   NKDKDRAIVVKR-AAPKKASHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 61  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQ- 95

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                               +TR ++   +       E+S++      +  L  E  L  
Sbjct: 96  -------------------GVTRSTDGSNNRS-----ERSVSHNNEDSVKQLQGE--LER 129

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA+ +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E ++ ++ G A  +    +DPM+  NRRI I+V
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIV 284


>gi|144899852|emb|CAM76716.1| Flagellar motor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 323

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 144/329 (43%), Gaps = 49/329 (14%)

Query: 13  QFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           Q IIIK  KKVA     ++ G+WK+ YADF+T +MAFFL++W++NA  ++    I  YF 
Sbjct: 5   QQIIIKRVKKVAAG---HHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGISNYFA 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P       ASK                                 IG   Q  Q     + 
Sbjct: 62  P-----SMASK--------------------SASGAGGLLGGQVIGQGAQVSQTSS-PSL 95

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           + +L  S      ++  + ++E  + + +    EK   +E+  F     K K +     K
Sbjct: 96  VQHLPPSSIGPGGEDMTSENTEPMEGMSEEDFREKMAEREQQKF----DKAKEVLDNALK 151

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            + +L K+   ++   + DN  +G+  + T         DQ    MF   SS     T  
Sbjct: 152 GIPEL-KQFEGSM---MVDNTPEGLRIQIT---------DQEGLAMFPSGSSAMFGHTRA 198

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L  +  ++      ISI GHTDA PFR+     NW LS DRA ++ + L+ SGV E+RI
Sbjct: 199 LLDLVSRIVNQMPNKISITGHTDAIPFRDPSGYTNWELSADRALASRRALLGSGVPEERI 258

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +I G A     +  DP    NRRI I++
Sbjct: 259 DRIVGRASSEPLVVDDPKAPRNRRISIIL 287


>gi|307731388|ref|YP_003908612.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307585923|gb|ADN59321.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 335

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A   + ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P    L    +   D             D+S D      S D   GS+N      R
Sbjct: 61  YFNQPLKITLWGGDRSAEDSSI----LKGGGRDISTDAQGVTRSTD---GSSN------R 107

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            E  + + SN    +  +  L R                              +E++   
Sbjct: 108 AERTVSH-SNEDSMKQLQGELER------------------------------REQV--- 133

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 134 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA  +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNRK 288


>gi|115350223|ref|YP_772062.1| flagellar motor protein MotB [Burkholderia ambifaria AMMD]
 gi|115280211|gb|ABI85728.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 339

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                      SL     K  D       + + ++ E   L  L  + + A++    L+ 
Sbjct: 106 ----------TSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDESKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|170703865|ref|ZP_02894555.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170131226|gb|EDS99863.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 339

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 150/330 (45%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                      SL     K  D    +  + + ++ E   L  L  + + A++    L+ 
Sbjct: 106 ----------TSLADRVAKAGDQNSRSQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|171322726|ref|ZP_02911473.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171091928|gb|EDT37395.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 339

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S          +RSSQ   D SI   I     DL   S+      +R +       
Sbjct: 69  ALFGSG---------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT----- 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D    +  + + ++ E   L  L  + + A++    L+  
Sbjct: 106 ---------TSLADRVAKAGDQNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|188579878|ref|YP_001923323.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179343376|gb|ACB78788.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 470

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 13/174 (7%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISST--LSGLVAD---------NIVKGVLFETTRTG--I 224
           L+K ++ A+K      D   K + T  LS L A+         N       E  RTG  +
Sbjct: 292 LAKAEVPAVKEPAAGADQPAKAAETAALSALKAEIARAVPSLPNSAPAPHLEVRRTGEGV 351

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN 284
           LISI D+ N  MF   S+ P P+ +  L++I ++L      I +RGHTD  PFR+   DN
Sbjct: 352 LISITDEINFSMFGIGSAEPTPKVVKALERIAKILNSRPGRIVVRGHTDGRPFRSETYDN 411

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           WRLS  RA  A  +L++ G+ E RI +I G+A  + +IA+DP  + NRRI+IL+
Sbjct: 412 WRLSSARAQMASYMLVRGGLDEARIERIEGYADRQPRIAADPKAAENRRIEILL 465



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          + IIIK+    +D  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP 
Sbjct: 7  EIIIIKRHGDHEDG-HHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPV 65

Query: 73 GKNLMTA-SKGIFDEQ---NPPERSSQNKID 99
              +T   KG+ D Q   N P  S + K D
Sbjct: 66 KLAEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96


>gi|103488396|ref|YP_617957.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98978473|gb|ABF54624.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 287

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 69/334 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-- 72
           II+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT++  +KA+  YF P   
Sbjct: 12  IIVKKVIEAGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATNEKQRKALADYFAPTIV 71

Query: 73  -GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K     S G+F   +           +S+D+                           
Sbjct: 72  QSKQDTAGSNGLFGGDS----------LVSVDK--------------------------- 94

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            Y   + Q+     ++ RD+  G          ++   E   F        +LA   K R
Sbjct: 95  -YPHGAAQTGTRAMTIPRDAVGGPREASG----RAREAESKRF-------SLLAQSMKDR 142

Query: 192 LQ---DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +Q   DL +             + + + F  T  G+ I I+D  +  MF   +S   P  
Sbjct: 143 IQSKGDLRR-------------LARNLHFTETMEGLRIDIVDDADFSMFALGTSQLTPAG 189

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +  ++   +A +   + IRGHTDA+P+      +NWRLS+DRA      L   GV+ D
Sbjct: 190 AKLFAEVAVPIAEAPNQLMIRGHTDAAPWSAKSGTNNWRLSVDRAEVTRHYLEFRGVASD 249

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           R ++I G A     I SD  +  NRRI I +  R
Sbjct: 250 RFARIEGVADREPYIPSDRFDPRNRRISITLGWR 283


>gi|328545495|ref|YP_004305604.1| flagellar motor protein MotB [polymorphum gilvum SL003B-26A1]
 gi|326415236|gb|ADZ72299.1| Flagellar motor protein MotB [Polymorphum gilvum SL003B-26A1]
          Length = 434

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K    LQ   + ++ T  G  A  I      E T  G+LIS+ D ++  MF   S+ P P
Sbjct: 282 KTAAALQADLQGLAETPLGAAASRIT----VERTGAGLLISLTDDQDFGMFAVGSAEPRP 337

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E + ++++IG  L+     I IRGHTDA PFR+   DNWRLS  RA+ A  +L + GV  
Sbjct: 338 ELVRLMERIGSTLSARPGRIVIRGHTDARPFRSKTYDNWRLSSARAHMALYMLARGGVDA 397

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            R+ +I G+A   LK  SDP ++ NRRI+I +
Sbjct: 398 GRVERIEGYADRDLKRPSDPYSAVNRRIEIFL 429



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 45/61 (73%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          + + +I++++ A D   +  G WKI +ADFMT +MAFFLVMW+IN TD++ ++ + QYFN
Sbjct: 7  SGEIVIVRRRPAWDADHHKGGVWKIAFADFMTAMMAFFLVMWLINVTDENVRQGVAQYFN 66

Query: 71 P 71
          P
Sbjct: 67 P 67


>gi|323527738|ref|YP_004229891.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384740|gb|ADX56831.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 335

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A   + ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASSAQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P                         KI L   +   ++S  LK G  +     Q 
Sbjct: 61  YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDSQG 96

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +         ++ S+   N   R    G     S D  K +  E             L  
Sbjct: 97  V---------TRTSDGSINRSDRTVAHG-----SEDAMKQLQGE-------------LER 129

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA  +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DPM+  NRRI I+V +R+
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288


>gi|52842529|ref|YP_096328.1| flagellar motor protein MotB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629640|gb|AAU28381.1| chemotaxis (motility protein B) transmembrane [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 312

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 151/329 (45%), Gaps = 61/329 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
            +  I +K+  +D  ++ GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF   
Sbjct: 29  HYTPIIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
            K  M                   K+ L   E +      +K G  N       +E+   
Sbjct: 86  -KQPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             ++ Q S   K  +     K K++ +S   E  I K E      L  E  L+M++   L
Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIVESQANE--IKKLEE-----LKSEINLSMEKDPSL 166

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L K++                L +    G+ I +ID +  PMFD  S    PE   +L
Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             I ++L      I+I+GHTDA+P+ N   +   NW LS  RA +A + L+K+G+ E+++
Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
             ++G++   L    +P N  NRRI I+V
Sbjct: 271 MTVTGYSSTILLDKKNPYNPENRRISIIV 299


>gi|296157481|ref|ZP_06840316.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295892253|gb|EFG72036.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 56/335 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P    L    +   D             D+S D      S D   GS N+      
Sbjct: 61  YFNQPLKVTLWGGDRSAEDS----SILKGGGRDISTDAQGVTRSTD---GSNNRS----- 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                                                E+S++      +  L  E  L  
Sbjct: 109 -------------------------------------ERSVSHNNEDSMKQLQGE--LER 129

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + + +  V     + +  ++T TG+ I I+D +  PMF  +     
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L++IG  L      I ++GHTDA+ +    +   NW LS DRA ++ + L+  G
Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E ++ ++ G A  +    +DPM+  NRRI I+V
Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIV 284


>gi|206558533|ref|YP_002229293.1| flagellar motor protein MotB [Burkholderia cenocepacia J2315]
 gi|198034570|emb|CAR50435.1| chemotaxis protein MotB [Burkholderia cenocepacia J2315]
          Length = 339

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNMPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            ++ +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  AILGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                      SL     K  D    +  + + ++ E   L  L  + + A++    L+ 
Sbjct: 106 ----------TSLAERLAKAGDENSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDRVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|325923665|ref|ZP_08185290.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
 gi|325545864|gb|EGD17093.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
          Length = 404

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    ++I++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVVIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++  ++S  +D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTTEDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G++
Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   ++P N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276


>gi|254246760|ref|ZP_04940081.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
 gi|124871536|gb|EAY63252.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
          Length = 339

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN P   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNMPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            ++ +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  AILGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                      SL     K  D    +  + + ++ E   L  L  + + A++    L+ 
Sbjct: 106 ----------TSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G A  +    +DP++  NRRI ++V +R+
Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|296447981|ref|ZP_06889887.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296254491|gb|EFH01612.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 381

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%)

Query: 210 NIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           N   G   E T T  G+LIS+ D  N  MF   S  P P+ + ++ +I  VLA     + 
Sbjct: 246 NAQPGPHVEVTETAEGLLISLTDDANFSMFAIGSVKPKPQLVRIVGQIAGVLAKQPGEVE 305

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           +RGHTDA  +++   DNWRLS DRA  AY +L++ G++E R+ KI+G+A   LK   +P+
Sbjct: 306 LRGHTDARSYKSKVYDNWRLSADRANMAYYMLLRGGLAEKRVVKIAGYADRNLKAQKEPL 365

Query: 328 NSANRRIDILV 338
            + NRRI+ILV
Sbjct: 366 AAVNRRIEILV 376



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + I I+K     +  ++ G+WKI +ADFMT +MAFFLVMWIIN+T  +TK AI QYFNP 
Sbjct: 8   EIIFIRKNHGDHEEGHHGGAWKIAFADFMTAMMAFFLVMWIINSTSKETKAAIVQYFNPV 67

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEH 105
              L+    A KG+ D ++  +  S+     +  EH
Sbjct: 68  --QLVDSNPAHKGLRDPKDGGQGKSEKPTAATQKEH 101


>gi|54295159|ref|YP_127574.1| flagellar motor protein MotB [Legionella pneumophila str. Lens]
 gi|53754991|emb|CAH16479.1| hypothetical protein lpl2239 [Legionella pneumophila str. Lens]
          Length = 312

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 150/329 (45%), Gaps = 61/329 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
            +  I +K+  +D   + GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF   
Sbjct: 29  HYTPIIRKIKKNDHKYHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
            K  M                   K+ L   E +      +K G  N       +E+   
Sbjct: 86  -KRPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             ++ Q S   K  +     K K++ +S   E  I K E      L  E  L+M++   L
Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIIESQANE--IKKLEE-----LKSEINLSMEKDPSL 166

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L K++                L +    G+ I +ID +  PMFD  S    PE   +L
Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             I ++L      I+I+GHTDA+P+ N   +   NW LS  RA +A + L+K+G+ E+++
Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
             ++G++   L    +P N  NRRI I+V
Sbjct: 271 MTVTGYSSTVLLDKKNPYNPENRRISIIV 299


>gi|21244419|ref|NP_644001.1| flagellar motor protein MotB [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110081|gb|AAM38537.1| chemotaxis MotB protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|78049371|ref|YP_365546.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926421|ref|ZP_08187746.1| flagellar motor protein [Xanthomonas perforans 91-118]
 gi|78037801|emb|CAJ25546.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543210|gb|EGD14648.1| flagellar motor protein [Xanthomonas perforans 91-118]
          Length = 385

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D  + + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTDVDSRAKDKRRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|294624638|ref|ZP_06703310.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601073|gb|EFF45138.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 383

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|294667303|ref|ZP_06732523.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602975|gb|EFF46406.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 387

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D ++ + L +  DL ++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLREAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+S
Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   +DP N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276


>gi|27381973|ref|NP_773502.1| flagellar motor protein MotB [Bradyrhizobium japonicum USDA 110]
 gi|27355143|dbj|BAC52127.1| motB [Bradyrhizobium japonicum USDA 110]
          Length = 445

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           P  S+ +  A  ++  ++ L   I+  LS + A              G+L+S+ D  +  
Sbjct: 279 PKDSEPRDAAQTQQPTVKQLQSAIAEALSDIKA-GAGPAAEVRQVEEGLLVSLTDDTSFG 337

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           MF   S+ P PE I V+ KIG +L     +I +RGHTD  P+++   DNWRLS  RA  A
Sbjct: 338 MFAVGSAEPRPELIRVIDKIGPLLMKRQGMIIVRGHTDNRPYKSETYDNWRLSTARAQMA 397

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           Y +L++SGV   RI  + G+A  R K+ +DP  + NRRI+IL+ +++
Sbjct: 398 YYMLVRSGVDAQRIEHVEGYADRRPKLQNDPAAAQNRRIEILIREKR 444



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP- 71
          + +I++++ A  +  ++ G WKI YADFMT +MAFFLVMW++NA + D K+ +  YFNP 
Sbjct: 7  ELVIVRRRSAFAEEAHHGGVWKIAYADFMTAMMAFFLVMWLLNALNQDQKQVVASYFNPI 66

Query: 72 -FGKNLMTASKGIFD 85
             +N   A KG+ D
Sbjct: 67 KLAEN-APAPKGLKD 80


>gi|288942642|ref|YP_003444882.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288898014|gb|ADC63850.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 305

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 143/315 (45%), Gaps = 63/315 (20%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WKI +ADF T +MAFF+++WI+ +T +D K AI  YFN                 NP 
Sbjct: 24  GAWKIAFADFATAMMAFFMLLWIMGSTTEDQKAAISDYFN-----------------NP- 65

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                              SV + I ++  + Q               +    K SL  D
Sbjct: 66  -------------------SVFMGIATSPSQAQ--------------GEGTGSKPSLI-D 91

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK---ISSTLSGLV 207
            E   D+   T  E  +   +   L  L++E+  A  R   L++L ++    S TL+   
Sbjct: 92  FEGAIDMGPPTP-EPELTALDPERLDELAREQDAA--RLAALKELLERKLDQSETLA-PY 147

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            D ++  ++ E  R  I    +D+ +  MFD  S+     T  +L+++G ++      IS
Sbjct: 148 KDQLLIDIVPEGLRVQI----VDKEHRSMFDLGSAKLKDYTSDILRELGGLINQVPNRIS 203

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GHTDA P   ++  NW LS +RA +A + L+  G+  D++ ++ GFA       SDP 
Sbjct: 204 LTGHTDARPLGGLSYSNWELSTERANAARRALVAGGMRADKVGRVVGFASTVPFDTSDPN 263

Query: 328 NSANRRIDILVEDRQ 342
           N  NRRI ++V  R+
Sbjct: 264 NPINRRISLIVMTRE 278


>gi|149928472|ref|ZP_01916707.1| flagellar motor protein [Limnobacter sp. MED105]
 gi|149822806|gb|EDM82057.1| flagellar motor protein [Limnobacter sp. MED105]
          Length = 322

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 70/318 (22%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WKI YADF+T +MAFFL+MW++ +T +   K I  YFN     L  A  G      P  
Sbjct: 27  AWKIAYADFVTAMMAFFLLMWLLGSTSEGDLKGISDYFN---SPLKVALVG-----GPGS 78

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            ++ + ID      ++++   +K GST++              +NS  ++    +L R  
Sbjct: 79  GTATSVIDAG-GTDLSRSVGQIKSGSTDKA-------------TNSSNADATAEALER-- 122

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADN 210
                                                 KRL +L  +I     GL+ A +
Sbjct: 123 -----------------------------------AESKRLLELKGEIE----GLIDASD 143

Query: 211 IVKG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           ++K     ++ + T  G+ I I+D+RN PMFD  S++       +L+ + ++L      +
Sbjct: 144 LMKQFKNQIMLDITPEGLRIQIVDERNRPMFDSGSAVLKDYMKDILRNLTKLLNQVPNKL 203

Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           ++ GHTDA+P+   N    NW LS DRA ++ + +  +G+ + ++ ++ G A        
Sbjct: 204 TLSGHTDATPYAAGNKGYSNWELSADRANASRREMTLAGMPDSKMLRVVGLASSVSLDEK 263

Query: 325 DPMNSANRRIDILVEDRQ 342
           DP  + NRRI I+V +++
Sbjct: 264 DPYAAVNRRIAIVVMNKR 281


>gi|87121902|ref|ZP_01077787.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86162700|gb|EAQ63980.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 304

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 64/325 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           II++   +    ++ G+WKI  ADF   +MAFFLVMWIIN        AI+ YFN P  K
Sbjct: 8   IIRRVKKVKKGGHHGGAWKIALADFALAMMAFFLVMWIINVASPQELAAIQGYFNDP--K 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            + TA              S N IDL               G +  K   ++L+ N+   
Sbjct: 66  GMSTAGY------------SNNPIDL---------------GGSPAKSTERKLDINLPDP 98

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            + Q+ +  K     D+   +D          + ++E                      D
Sbjct: 99  GSVQRPDSVK----EDANSHRD---------QVAEQEQ--------------------AD 125

Query: 195 LAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           LA  +     G  V + + + +  E T  GI ++++D++N PMF + S   +P+  + + 
Sbjct: 126 LAAALGKKFEGEKVFEAVKENLQIEITPDGIRVTLLDKQNKPMFAQGSGRLMPDFELAMV 185

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            IG+VL+     + + GHTD+S +      NW LS  RA  A ++L + G  + R  ++ 
Sbjct: 186 NIGQVLSGLNNKLVVSGHTDSSAYSFAGLGNWELSAMRANEARRLLREGGAGDTRFVQVM 245

Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338
           G +       +DP    NRR+ +L+
Sbjct: 246 GLSDTAPYDRTDPAAGINRRVSVLL 270


>gi|157373190|ref|YP_001471790.1| OmpA/MotB [Shewanella sediminis HAW-EB3]
 gi|157315564|gb|ABV34662.1| OmpA/MotB [Shewanella sediminis HAW-EB3]
          Length = 336

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 44/324 (13%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           +IIK++     +  + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY N  G 
Sbjct: 8   LIIKRRKRQKRSATHGGAWKVAFADFTLAMMALFMVLWILQIADQQERTMIVQYLN--GD 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
              + S   FD    P     + IDL     I      +    T  +K    + N+I   
Sbjct: 66  MFASGSINPFDLSQSP-----SMIDL--QGSIALQQAIIPATGTGVEKAGPAIHNHI--- 115

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                              G+D  K+         E N  +P          + + +L+ 
Sbjct: 116 -----------------PVGEDNAKAGR-----GPELNSLVPG-------KFETQAQLEF 146

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA+++ S ++ +   N+   V  +    G+ I I D  +  MF + SS   P    +L  
Sbjct: 147 LAREVDSVITEV---NLSANVEIKVVPQGVRILIHDNVHQFMFTRGSSNMKPYFEDLLMA 203

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +G +L      ISI GHTD++P+      NW LS  RA  A +VL   GV   +I +++G
Sbjct: 204 LGPLLGGVENKISISGHTDSTPYAGKTFTNWELSSKRALLARRVLEYGGVKRHQIIQVTG 263

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A     I +DP  +ANRRI++LV
Sbjct: 264 MADQSPYIQNDPAAAANRRIEMLV 287


>gi|188993235|ref|YP_001905245.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734995|emb|CAP53207.1| motB2 [Xanthomonas campestris pv. campestris]
          Length = 392

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G++
Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   ++P N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276


>gi|21233083|ref|NP_639000.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770023|ref|YP_244785.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114936|gb|AAM42924.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575355|gb|AAY50765.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 393

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D ++ + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDN--------AADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G++
Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   ++P N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276


>gi|325915929|ref|ZP_08178225.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537896|gb|EGD09596.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 396

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 63/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +P        S G+    N P  +S + I L         + D+  G   QK +  R
Sbjct: 63  RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             +N         ++   +S  +D  + + L +  DL+++I+K +   L P   +     
Sbjct: 109 KRDNA--------ADTDVDSRAKDKRRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                                       +L + T  G+ I I+D++N PMFD       P
Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
            T+ +L+++   +      ISI GHTD + + + A   NW LS DRA +A + L+  G+ 
Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGME 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +++++ G +   L   ++P N  NRRI I+V
Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276


>gi|283851000|ref|ZP_06368285.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283573646|gb|EFC21621.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 344

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 51/329 (15%)

Query: 15  IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           IIIK  KKVA      + GSWK+ YAD +T +MAFFL+MW++N    D K+ +  YFN F
Sbjct: 11  IIIKRVKKVAAG---AHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQDKKEQLASYFNDF 67

Query: 73  GKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                     IF  QNP P     +   L     +        +GS +++        ++
Sbjct: 68  ---------SIF--QNPGPSAQLLDSGGLGPPGAV--------VGSQDERP-------DV 101

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-- 189
               + +     K   T D + G+ L    D + +   +        ++ + +A++++  
Sbjct: 102 AIDRDGKAPSGGKGQGTGDLDGGRQL----DAKAAAEAQAAAKAEAAAEAQAVALEQQVE 157

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K LQ+   +++  +S          V  E  +  I I  +D+ + P+FD      LP+  
Sbjct: 158 KALQESVPELAGQVS----------VTQEKDKVRIEI--MDKSDRPLFDLGGVALLPDAQ 205

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +  V+      ++I GHTDA  +      NW LS  RA SA +++++ G+  D++
Sbjct: 206 RILAAVTGVIRKDGIKVAIEGHTDAYRYSGT-YSNWDLSAGRALSARRLMLQQGLPPDQV 264

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +SGFA  R  +   P+++ NRRI +L+
Sbjct: 265 AAVSGFADTRPYVPGKPLDARNRRISLLL 293


>gi|254699266|ref|ZP_05161094.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
 gi|261749708|ref|ZP_05993417.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
 gi|261739461|gb|EEY27387.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
          Length = 345

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 153/366 (41%), Gaps = 68/366 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+++    D   ++ G WKI YADFMT                     A+  YFNP 
Sbjct: 10  EIIIVRRGGHDDHEAHHGGVWKIAYADFMT---------------------AMASYFNPV 48

Query: 73  GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126
              LM   ++ KG+   +N  +R    K+    D+ +   TK   D  +   + +++ Q 
Sbjct: 49  --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 101

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173
                  L+   +  H    L   S KG      +      +  E Y             
Sbjct: 102 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 158

Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219
                PP    + +   L   + K+ +   +L   +    +G  A N  K    E     
Sbjct: 159 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 218

Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA 
Sbjct: 219 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 278

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRID
Sbjct: 279 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 338

Query: 336 ILVEDR 341
           I ++ +
Sbjct: 339 IFIKSK 344


>gi|240137207|ref|YP_002961676.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1]
 gi|240007173|gb|ACS38399.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1]
          Length = 468

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++A+ + S  +G  A  +      E  RTG  +LISI D+ N  MF   S+ P P+ +  
Sbjct: 323 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 376

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L++I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +
Sbjct: 377 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 436

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           I G+A  + +IA++P  + NRRI+IL+
Sbjct: 437 IEGYADRQPRIANNPKAAENRRIEILL 463



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP   
Sbjct: 8  IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67

Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99
            +T   KG+ D Q   N P  S + K D
Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96


>gi|218528676|ref|YP_002419492.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|218520979|gb|ACK81564.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
          Length = 462

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++A+ + S  +G  A  +      E  RTG  +LISI D+ N  MF   S+ P P+ +  
Sbjct: 317 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 370

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L++I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +
Sbjct: 371 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 430

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           I G+A  + +IA++P  + NRRI+IL+
Sbjct: 431 IEGYADRQPRIANNPKAAENRRIEILL 457



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP   
Sbjct: 8  IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67

Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99
            +T   KG+ D Q   N P  S + K D
Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96


>gi|254559218|ref|YP_003066313.1| chemotaxis protein MotB [Methylobacterium extorquens DM4]
 gi|254266496|emb|CAX22260.1| Chemotaxis protein MotB [Methylobacterium extorquens DM4]
          Length = 474

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++A+ + S  +G  A  +      E  RTG  +LISI D+ N  MF   S+ P P+ +  
Sbjct: 329 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 382

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L++I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +
Sbjct: 383 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 442

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           I G+A  + +IA++P  + NRRI+IL+
Sbjct: 443 IEGYADRQPRIANNPKAAENRRIEILL 469



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP   
Sbjct: 8  IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67

Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99
            +T   KG+ D Q   N P  S + K D
Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96


>gi|254504256|ref|ZP_05116407.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222440327|gb|EEE47006.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 471

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 23/183 (12%)

Query: 179 SKEKILA-MKRKKRLQDLAKKI------SSTLSG--LVAD-----NIVKGVLFETTRT-- 222
           SK +I+A + R+ +   LA +       + T+ G  LVA+     +  +G L E T    
Sbjct: 283 SKNQIVAHVSRRDQETSLAAEAEGGATEAETVPGALLVAELTTVLDAAEGTLLENTAAQI 342

Query: 223 -------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G LIS+ D +N  MF   S+ P PE + +L+++G+V++ +   I I GHTDA 
Sbjct: 343 TVVRQDDGALISLTDDQNFGMFAIGSAEPRPELVSLLERLGKVISKTGAQIVITGHTDAR 402

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           PF++   DNWRLS  RA+ A  +L + GV  DR  +I G A   LK A DP  ++NRR++
Sbjct: 403 PFKSKTYDNWRLSSARAHMALYMLSRGGVGADRFVRIEGAADRHLKNAEDPFAASNRRVE 462

Query: 336 ILV 338
           I +
Sbjct: 463 IYL 465



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          ++ +I++++   DD     G WKI YADFMT LMAFFLVMW+IN TD+  ++ + QYFNP
Sbjct: 3  NEIVIVRRRHNWDDDEKPHGVWKIAYADFMTALMAFFLVMWLINVTDESVRRGVAQYFNP 62


>gi|170741408|ref|YP_001770063.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195682|gb|ACA17629.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 441

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 86/150 (57%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +L  ++   +  L        V    T  G LISI D+ N  MF+  S+ P  + +  
Sbjct: 290 LAELKAEVLKAVQPLATGAPAPKVEVRRTGEGTLISITDELNFSMFNVGSAEPQAKVVKA 349

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L++I +VL+     I +RGHTDA PF++ + DNWRLS  RA  A  +L++ GV+E RI +
Sbjct: 350 LERIAKVLSSRPGQIVLRGHTDARPFKSESYDNWRLSSARAQMAAYMLIRGGVAERRIVR 409

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           I G A  + +  SDPM + NRRI+IL+ ++
Sbjct: 410 IEGHADRQPRNPSDPMAAENRRIEILLREK 439



 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          III ++   D+  ++  +WKI  ADFMT +M+ FLV+W++N+T  +TK AI  YFNP   
Sbjct: 8  IIIVRRRGDDEDGHHSAAWKIALADFMTAMMSLFLVLWLVNSTSKETKSAIADYFNPIRL 67

Query: 75 NLMTAS-KGIFDEQNPPERSSQ 95
            M+   KG+ D  N P  S +
Sbjct: 68 AEMSPEKKGLRDPTNAPSDSGE 89


>gi|163850073|ref|YP_001638116.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661678|gb|ABY29045.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
          Length = 468

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++A+ + S  +G  A  +      E  RTG  +LISI D+ N  MF   S+ P P+ +  
Sbjct: 323 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 376

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L++I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +
Sbjct: 377 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 436

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           I G+A  + +IA++P  + NRRI+IL+
Sbjct: 437 IEGYADRQPRIANNPKAAENRRIEILL 463



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP   
Sbjct: 8  IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67

Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99
            +T   KG+ D Q   N P  S + K D
Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96


>gi|107024396|ref|YP_622723.1| flagellar motor protein MotB [Burkholderia cenocepacia AU 1054]
 gi|116688278|ref|YP_833901.1| flagellar motor protein MotB [Burkholderia cenocepacia HI2424]
 gi|170731591|ref|YP_001763538.1| flagellar motor protein MotB [Burkholderia cenocepacia MC0-3]
 gi|105894585|gb|ABF77750.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116646367|gb|ABK07008.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|169814833|gb|ACA89416.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 339

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +Y   F   
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEY---FNMP 65

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           L  A  G  D      RSSQ     SI   I     DL   S+      +R +       
Sbjct: 66  LKAAILGSGD------RSSQES---SI---INGGGRDL---SSVDAGTLRRTDGT----- 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D    +  + + ++ E   L  L  + + A++    L+  
Sbjct: 106 ---------TSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|182679602|ref|YP_001833748.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635485|gb|ACB96259.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 416

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 8/161 (4%)

Query: 179 SKEKILAMKR-KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           SKE +  + R K  L  + KKIS+  S  +       +  E+T  G+L+++ D     MF
Sbjct: 258 SKELVAELNRIKSELNSVQKKISAAPSTPI-------IEVESTSEGVLLNLTDDVTYSMF 310

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
              SS P  +T+ +++K+  +L   T  + IRG+TD  P+++   DNWRLS  RA  A  
Sbjct: 311 AVGSSEPQKQTVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQY 370

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +L++ G+   R+  I G+A   LK + DP  S NRRI+ILV
Sbjct: 371 MLIRGGLDPKRVEHIEGYADRHLKNSEDPNASVNRRIEILV 411



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 59/85 (69%), Gaps = 3/85 (3%)

Query: 8  NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          ++ +++ +IIK++V+ +   ++ G+WKI +ADFMT LMA FLV+W+IN+ ++ TK +I +
Sbjct: 2  SENHNEIVIIKRRVSHEGG-HHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR 60

Query: 68 YFNPFGKNLMTASKGIFDEQNPPER 92
          YFNP     MT  +  F  +NP E+
Sbjct: 61 YFNPIKLVDMTPMQKGF--RNPSEK 83


>gi|294013095|ref|YP_003546555.1| chemotaxis MotB protein [Sphingobium japonicum UT26S]
 gi|292676425|dbj|BAI97943.1| chemotaxis MotB protein [Sphingobium japonicum UT26S]
          Length = 351

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 136/341 (39%), Gaps = 76/341 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+   + II+KK V      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +K +  
Sbjct: 9   NEPEPRPIIVKKIVVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQRKGLAD 68

Query: 68  YFNP---------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           YF P          G N M     +  ++N P    Q  + ++I                
Sbjct: 69  YFTPTLVQLKEGSAGSNGMFGGDSMTAKENYPTTGGQGNLAITIPRDA------------ 116

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
                                      S T+D  +G    K+ D  K            +
Sbjct: 117 ---------------------------SGTKD--QGGKATKAADRAK---------FESI 138

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            KE    M R++ ++ L K I                 F  T  G+ I +ID+ +  MF 
Sbjct: 139 RKELEARMARRQGIRKLLKNIR----------------FTETHEGLRIDLIDEADFAMFA 182

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297
             +   LP+   ++ ++   +      + +RGHTD  P+      +NW LS  RA +  +
Sbjct: 183 MGTDRLLPQARELVNEVAATIRTMPNPLIVRGHTDGLPYSAGQTMNNWMLSSARAEATRK 242

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            L  SG+  DR ++I G A        D  +  NRR+ I++
Sbjct: 243 ALAASGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283


>gi|170748097|ref|YP_001754357.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654619|gb|ACB23674.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 401

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 77/129 (59%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  + T  G+LI++ D  N  MF   S+ P PET+  ++++ + LA     I +RGHTD+
Sbjct: 273 VEVQGTPEGLLINVTDDLNFSMFAVGSAEPRPETVRAMERLAKALAARPGRIVVRGHTDS 332

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            PFR+   DNWRLS  RA+ A  +L ++G+ E RI ++ G A    + A+DP    NRRI
Sbjct: 333 RPFRSEVYDNWRLSTARAHMASYMLTRAGIDEARIWRVEGAADRMPRNAADPKAPENRRI 392

Query: 335 DILVEDRQG 343
           +IL++   G
Sbjct: 393 EILLQGSPG 401



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   II+ ++ + +D  ++ G WKI +ADFMT LMA FLV+W+I AT+D+TK +I  YFN
Sbjct: 4  NPPEIIVVRRASDEDDGHHGGVWKIAFADFMTTLMALFLVLWLIKATNDETKTSIANYFN 63

Query: 71 PFG-KNLMTASKGIFDEQ 87
          P      +   KG+ D Q
Sbjct: 64 PISLSEPLPLRKGVNDPQ 81


>gi|94495402|ref|ZP_01301982.1| flagellar motor component [Sphingomonas sp. SKA58]
 gi|94424790|gb|EAT09811.1| flagellar motor component [Sphingomonas sp. SKA58]
          Length = 350

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 141/341 (41%), Gaps = 77/341 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA--- 64
           N+   + +I+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +KA   
Sbjct: 9   NEPEPRPVIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQRKALAD 68

Query: 65  ------IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
                 +E      G   +     +  + N P       + ++I    T        G+ 
Sbjct: 69  YFTPTLVELKMASAGSTGLMGGDSLTGKDNYPTTGGVGNLSITIPRDAT--------GTK 120

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           +Q  +  R        ++ Q+ E  K                 DLE  +N++        
Sbjct: 121 DQGGKAMRA-------ADRQKFESIKK----------------DLEARMNRK-------- 149

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
                                     GL    + K V F  TR G+ I +ID+ +  MF 
Sbjct: 150 --------------------------GL--SRLRKNVRFTETREGLRIDLIDEADFAMFA 181

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297
             +   +PE   ++ ++  VL      + +RGHTDA P+ +  A +NWRLS  RA S  Q
Sbjct: 182 MGTDRLVPEARALVGEVASVLKTMPNDLIVRGHTDALPYASGKAMNNWRLSSARAESTRQ 241

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            L  SG+   R ++I G A     +  +  +  NRR+ I++
Sbjct: 242 ALADSGIGNPRFARIEGVADREPFVKDNRYDPRNRRMSIIL 282


>gi|115523189|ref|YP_780100.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisA53]
 gi|115517136|gb|ABJ05120.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 423

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   I++ L+ L A +    V    T  G+LI++ D  N  MF   S+ P P  +  L K
Sbjct: 277 LQAAINAALASLGAAHPATEV--RETSEGLLINLTDDANYGMFANGSAEPTPGLVRTLDK 334

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           I  +++    ++ +RGHTD  P+R+   DNWRLS  RA+ A+ +L++ G+   RI +I G
Sbjct: 335 ITPLISQQRGLVIVRGHTDDRPYRSADYDNWRLSTARAHMAFHMLIRGGLDAKRIERIEG 394

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
           +A  R K  +DP    NRRI+IL+
Sbjct: 395 YADRRPKTPNDPSAPQNRRIEILI 418



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 8  NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          +Q+  + III+++  +D      G WKI YADFMT +MAFFLVMW+++AT  +T++++  
Sbjct: 3  DQDRPELIIIRRRSDLD-VEEKSGVWKIAYADFMTAMMAFFLVMWLMSATTPETRESVAT 61

Query: 68 YFNPF 72
          YFNP 
Sbjct: 62 YFNPI 66


>gi|327398736|ref|YP_004339605.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411]
 gi|327181365|gb|AEA33546.1| OmpA/MotB domain protein [Hippea maritima DSM 10411]
          Length = 287

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 143/335 (42%), Gaps = 56/335 (16%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +EN +  I+KK            +W++ Y DFMT +MAFFLVMW+I AT+   +K +  Y
Sbjct: 3   EENQEGGIVKKCKKCKCEEGGGSAWEVAYGDFMTSMMAFFLVMWLIAATNVKQRKVLSTY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F   G   +T    +   +   +  S++   L++ + I     ++ + S   +K      
Sbjct: 63  FTQPGATSLTEGSSMLPSKGVFDIGSRS---LTVSQRIP----EMPLPSVQPQK------ 109

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                 + KG+ L     + K + K         S   I   K+
Sbjct: 110 ----------------------TLKGRGL-----IPKVLRK---------SGGGIGQSKQ 133

Query: 189 KKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
              L ++ KKI   ++     L   N +K    E T  G+ I I D+   PMF   S   
Sbjct: 134 TMNLYNIMKKIQQVIASKKELLQYRNQIK---MEITEEGLRIVIFDKNKRPMFYPGSDKL 190

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    VL  + + LA  +  I+I GHTDA+P+      NW LS  RA +A + +  +GV
Sbjct: 191 EPWAKEVLDIVAKQLADISNKITIEGHTDANPYVIGGLSNWDLSTMRANAARREIQTNGV 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           S  R   I G+   R    +DP +  NRRI ILV+
Sbjct: 251 SVSRFDSIVGYGDTRPVPGTDPKDPINRRIVILVK 285


>gi|157959885|ref|YP_001499919.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157844885|gb|ABV85384.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 336

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 44/324 (13%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIK+K        + G+WK+ +ADF   +MAFF+V+WII   D   +  I ++    G 
Sbjct: 8   IIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQ--GD 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
                S   FD  + P         L  +  +T     L   S+    +   L N I   
Sbjct: 66  LFEAGSINPFDLSSSPSM-------LDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEG 118

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            N+ ++            KG +L              N  LP          + + +L+ 
Sbjct: 119 ENNAKAG-----------KGPEL--------------NAMLPG-------KFETQAQLEV 146

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA++I   +  +     VK    +    G+ I + D  N  MF + SS   P    +L  
Sbjct: 147 LAREIDRVIEDVSMSANVK---LQVVPQGVRILMHDNINKFMFTRGSSEMKPYFEDLLMA 203

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +G VL+     +SI GHTD++PF      NW LS  RA  A +VL  +GV  +++ +++G
Sbjct: 204 LGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKRALLARRVLGYAGVKNNQVLQVTG 263

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A     I+ DP  +ANRRI++++
Sbjct: 264 MADQAPYISHDPAAAANRRIEMII 287


>gi|300024596|ref|YP_003757207.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526417|gb|ADJ24886.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 424

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 5/153 (3%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           + K+LQD    ISS L+          +  + T  G+L+S++D  +  MF+  S+ P P 
Sbjct: 274 KAKKLQD---DISSALA--KGSRAAPEIEVKATSEGLLVSLLDGADFGMFEVGSAKPRPA 328

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            ++ + K+G+VL      I +RGHTD+  ++N   DNWRLS  RA  AY +L++ G++E 
Sbjct: 329 LVLAMSKVGDVLKSLPGSIVVRGHTDSRAYKNGNYDNWRLSAARAQMAYYMLVRGGIAET 388

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R + I G A    KI S+     NRRIDIL+++
Sbjct: 389 RFAAIEGRADRDPKIPSNREAPENRRIDILIKE 421



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S+G ++  +   +I++++ + D+  ++ G WKI YADFMT +MAFFLVMW+INA D  T 
Sbjct: 2   SNGQEDVSSQPLVIVRRRRSHDEE-HHGGVWKIAYADFMTAMMAFFLVMWLINAADKKTI 60

Query: 63  KAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
             +  YFNP    +   A KG+ D      + ++ K +  + +H
Sbjct: 61  VQVAAYFNPMRLTDRFEAPKGLEDLNEIDAKQNEEKSEKGLSQH 104


>gi|158327337|emb|CAM82843.1| flagellar motor protein MotB [Yersinia enterocolitica W22703]
          Length = 302

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 147/337 (43%), Gaps = 73/337 (21%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N    Q  I+K+      +  + G+WK+ +ADF   +MA F+V+WI+    ++ ++ I  
Sbjct: 4   NARGGQTTIVKRAARKKHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVA 63

Query: 68  YFNPFGKNLMTASKGIFDEQN-----PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
             N          K IF +Q+        +S   K   S+D H                 
Sbjct: 64  QLN---------GKTIFAQQSFISIPSKSKSGGGKFSDSVDGH----------------- 97

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                          +Q++  K++L           +  + E+S+ +             
Sbjct: 98  ---------------EQAKETKSNLA---------VEVPEPEQSLEE------------- 120

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            L  +  + +++L + I+   S   A + +K    E    G+ I I D ++  MF +SS+
Sbjct: 121 -LVDRSGREMEELTRIITQITSAYDAQSNLK---MEVVPQGLRILIQDDKHRDMFQRSSA 176

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK 301
           +  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L+K
Sbjct: 177 VLTPFFSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMAHKALVK 236

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            G+ +DR+ +I+  A   L  +++P+ + NRRI+I+V
Sbjct: 237 GGLDDDRVLQINAMAEQMLLDSAEPLAAKNRRIEIMV 273


>gi|158422249|ref|YP_001523541.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
 gi|158329138|dbj|BAF86623.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
          Length = 472

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 72/119 (60%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T+ GI++S+ D  N  MF   S++P    +  + KIGE L      + IRG+TD  P+R+
Sbjct: 350 TKEGIVLSLTDDINYSMFPVGSAVPDGRLVRAMAKIGEALGKRPGEVVIRGYTDGRPYRS 409

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              DNWRLS  RA+  Y +L++ G+ E R++ I G+A   LK  ++P  + NRRI+IL+
Sbjct: 410 DTYDNWRLSTARAHMTYYMLVRGGLQEPRVAMIEGYADRNLKNKAEPYAAENRRIEILL 468



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 6/83 (7%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          E+ + IIIK+    +   ++  +WK+ +ADFMT +MAFFL+MW+IN TD D +KAI  YF
Sbjct: 6  EHHELIIIKRHEDEEHEHHS-SAWKVAHADFMTAMMAFFLIMWLINVTDKDVRKAIASYF 64

Query: 70 NPFG-KNLMTASKGIFDEQNPPE 91
          NP      MT  KG+    N PE
Sbjct: 65 NPVHLAESMTERKGL----NEPE 83


>gi|167626173|ref|YP_001676467.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167356195|gb|ABZ78808.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 336

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 64/334 (19%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---- 70
           ++I++K        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY N    
Sbjct: 8   VVIRRKKRSKAKAGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLNGDLH 67

Query: 71  ------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                 PF    +  +  +FD Q           +++I + +      L   +T  ++  
Sbjct: 68  DDGSINPFN---LGGAPSMFDFQG----------NIAIQQAV------LPAAATGVERSG 108

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
             + N I      Q +E+ K      + +G +L              N  +P        
Sbjct: 109 PAMHNRI-----PQGTENAK------AGRGPEL--------------NSLVPG------- 136

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             + + +L+ LAK+I   +  +   ++   V  +    G+ I + D  N  MF + S+  
Sbjct: 137 KFETQAQLEFLAKEIDKVIENV---SMSANVELQVVPQGVRILMHDNVNQFMFTRGSADM 193

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L  +G +L+     I+I GHTD+SP+      NW LS  RA  A +VL   G+
Sbjct: 194 KPYFEDLLMALGPLLSQVENKITISGHTDSSPYAGKKFTNWELSSKRALLARRVLEYGGL 253

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              ++ +++G A     +  DP  +ANRRI++LV
Sbjct: 254 RRHQVIQVTGMADQAPYVIKDPAAAANRRIEVLV 287


>gi|295699068|ref|YP_003606961.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295438281|gb|ADG17450.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 344

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 131/318 (41%), Gaps = 78/318 (24%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WKI YADF+T +MAFFL+MW++ +T    K+                  GI D  N P
Sbjct: 34  GAWKIAYADFVTAMMAFFLLMWLLGSTSKYDKQ------------------GIEDYFNTP 75

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
             S                                        L  ++ +   + S+ + 
Sbjct: 76  LSS---------------------------------------LLGGNEGTAAARPSVVQG 96

Query: 151 SEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
              G+D+   +D    +  K +    PP +    +     KRLQ L  K+S+ +      
Sbjct: 97  G--GRDI---SDTRPGVGTKSQTEPTPPRAAMPAVTPMDAKRLQQLKAKLSALIEQSSVL 151

Query: 210 NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           N  K  +    T  G+ I I+D +N PMF   SS   P  + +L +IG  L      ISI
Sbjct: 152 NAFKDQIRISITNEGLRIEIVDSQNRPMFASGSSKLQPYAVTILTQIGAALNDVDNRISI 211

Query: 269 RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA------HHRL 320
            GHTDA P+        NW LS +RA +A + L+  G+  D++ ++ G A       H  
Sbjct: 212 AGHTDAVPYTAGPEGYSNWELSSERANAARRALVAGGMHGDKLLQMRGLADVLPLNSH-- 269

Query: 321 KIASDPMNSANRRIDILV 338
            +A +P    NRRI ILV
Sbjct: 270 -VADEPT---NRRISILV 283


>gi|149908742|ref|ZP_01897403.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36]
 gi|149808284|gb|EDM68223.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36]
          Length = 334

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 146/324 (45%), Gaps = 41/324 (12%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIK+K          G+WK+ +ADFM  LMAFF+V+WI+  +D D +K        F +
Sbjct: 5   IIIKRKRRSRGKSKGGGAWKVAFADFMLALMAFFMVLWILAVSDADERKE-------FSE 57

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           N+   S  +F+ ++ P   S N +  SI         DL +                  L
Sbjct: 58  NIRNYS--LFESESNPFDFSGNPLPTSI-------GADLSV------------------L 90

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            +  Q +  K+S+++ + +  +  ++ D E      +   +  L K ++ +     +L  
Sbjct: 91  DSKHQPDLTKHSVSKKTARSLN-QRTADDEGDSGYGDKPMMNSLLKGQLTS---PDQLAL 146

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA K+ +    + A    + +  E    G+ I + D     MF + S+   P    VL+ 
Sbjct: 147 LASKLEAITDSIGA---AENIDIEVVPQGLRILLHDNAKHKMFRRGSAQMTPFFQDVLRS 203

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  V       + I GHTD S F N A  NW LS  RA  A Q+L   G+  +R++++  
Sbjct: 204 LAPVFIPIENKLMISGHTDRSKFHNAAFTNWELSSQRALQARQMLQIGGMPRERVAQVVA 263

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            +      A++P +S NRRI++L+
Sbjct: 264 MSDTMPIDAANPKSSVNRRIELLL 287


>gi|288962674|ref|YP_003452968.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288914940|dbj|BAI76424.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 347

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 149/342 (43%), Gaps = 19/342 (5%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           II+K+ +   D   + G+WK+ YADF+T +M FFLVMW++N T  + +K I  YFNP   
Sbjct: 10  IIVKRHLGSHDEEEHNGTWKLAYADFVTAMMTFFLVMWLMNITTTEQRKGIADYFNPVAV 69

Query: 75  NLM-TASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQR----- 126
           +   + + G+   ++  +  S    + + D+   +    V   +G ++++   ++     
Sbjct: 70  SQSNSGADGMLAGRSVDKSGSLTTPNAAGDQASPVASPPVVASVGDSDRQPAGRKDPMPH 129

Query: 127 -----LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                +         S+ +     +     +    +       ++   E    L   S E
Sbjct: 130 PPGGTVPPVDLLRPASESAPGAPATEPPAPQMAPQMAPQASAPQATRAELEALLERQSSE 189

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240
               +  K  L+ L + +   ++     N ++G L  +    G+ + + DQ    MF   
Sbjct: 190 ----LGEKVALESLERDLRQRIAASPDLNALQGSLVIQQVPEGLRVQLTDQARFSMFKVG 245

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299
           S+    +   +++ +   LA     I I GHTD   +   A+  NW LS DRA +A + L
Sbjct: 246 SAQMNDQGRRLMRMVASALAAVPNPIGITGHTDGLGYAADAKYGNWELSSDRANAARREL 305

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           + SG+   RI ++ G A      A  P++ +NRRI I +  R
Sbjct: 306 IASGIPNTRIVRVEGRADLDHFGAGGPLDPSNRRISITLLRR 347


>gi|323139665|ref|ZP_08074707.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322395097|gb|EFX97656.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 351

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 70/116 (60%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+LI++ D  N  MF+  S  P P+ + ++ +IG+VLA  T  I +RGHTD   + + + 
Sbjct: 231 GVLITLTDDANFSMFEVGSIEPKPQLVRIIGQIGKVLAKKTGEIEVRGHTDGRSYTSKSY 290

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           DNWRLS DRA     +L++ G+   R+ KI G A   LK   DP+   NRRI+IL+
Sbjct: 291 DNWRLSSDRATVVNYMLIRGGLPPARVGKIVGMADRHLKTPKDPLAPVNRRIEILL 346



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 9/90 (10%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   III+KK    D  ++ G WK+ +ADFMT +MAFFLVMW+IN+T  +TK  I QYFN
Sbjct: 6  NGSPIIIRKKRGDGDEDHHGGVWKLAFADFMTAMMAFFLVMWLINSTSKETKAVIVQYFN 65

Query: 71 PFGKNLM---TASKGIFDEQNPPERSSQNK 97
          P    L+    A KG+ D    P+++ Q K
Sbjct: 66 PV--QLIDSNPAHKGMRD----PKQTGQGK 89


>gi|89072298|ref|ZP_01158877.1| chemotaxis LafU protein [Photobacterium sp. SKA34]
 gi|89051830|gb|EAR57282.1| chemotaxis LafU protein [Photobacterium sp. SKA34]
          Length = 331

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 137/334 (41%), Gaps = 66/334 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N + I+ K+ V       + G+WK+ +ADFM  LMA FLV+W++   D+  + AI  YF
Sbjct: 2   QNTEQIVFKRAVKRHSHQQHGGAWKVAFADFMIALMALFLVLWLLQVVDEKERTAIVAYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS---VDLKIGSTNQKKQYQR 126
           N         +  +FDE       S N  D       T NS   +D    + +   Q   
Sbjct: 62  N---------NSSVFDE------GSGNPFD-------TDNSPSPIDFGGDAADMSAQNAA 99

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +     Y  N                               N  E+  L P S E     
Sbjct: 100 MTMKSIYNGNG------------------------------NGPESDALIPGSFET---- 125

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LA  +  T   + A      +  + T  G+ +++ D     MF + ++   P
Sbjct: 126 --QEQLSILASVVEETAKQVSAQG---NIAIDITPQGLRVTLQDDFKQNMFHRGNANLTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARD-NWRLSLDRAYSAYQVLMKSGV 304
               VL  I  +    +  I I GHTDA+ F+N  +R  NW LS  RA  A Q L+  G+
Sbjct: 181 FFEDVLLTIAPIFKQISNSIIISGHTDATQFKNRFSRQTNWELSSSRANVARQTLISGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             DR+ +++G A   L    DP  S NRRI++ V
Sbjct: 241 PSDRVLQVAGMAERALLNKQDPSASENRRIELFV 274


>gi|238762341|ref|ZP_04623312.1| Lateral flagellar proton motor protein B [Yersinia kristensenii
           ATCC 33638]
 gi|238699326|gb|EEP92072.1| Lateral flagellar proton motor protein B [Yersinia kristensenii
           ATCC 33638]
          Length = 302

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 73/342 (21%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M SH        Q  IIK+      +  + G+WK+ +ADF   +MA F+V+WI+    ++
Sbjct: 1   MRSHA----RGGQTTIIKRSARKRHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQN---PPERSSQNKIDLSIDEHITKNSVDLKIGS 117
            ++ I    N          + IF +Q+    P +S       S       NS+D K   
Sbjct: 57  ERQEIVAQLN---------GQTIFSQQSFISIPSKSKSGGGKFS-------NSIDGK--- 97

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
                               +Q++  K++L           +  D E+S+          
Sbjct: 98  --------------------EQAKETKSNLA---------VEVPDPEQSLED-------- 120

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
                 +  K +K +++L++ I    S   A + ++    E    G+ I I D +   MF
Sbjct: 121 ------VVDKSRKEMEELSRIIMQITSAYDAQSNLQ---MEVVPQGLRILIQDDKQRDMF 171

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAY 296
            +SS++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A+
Sbjct: 172 QRSSAVLTPFFGRLLAELAPAFNEMDNKIIITGHTDASRYRDQVMYNNWNLSGERALMAH 231

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + L+K G++E R+ +I+  A   L   ++P+ + NRRI+I+V
Sbjct: 232 KALVKGGLTEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMV 273


>gi|145297473|ref|YP_001140314.1| LafU [Aeromonas salmonicida subsp. salmonicida A449]
 gi|22758827|gb|AAN04225.1| LafU [Aeromonas salmonicida]
 gi|142850245|gb|ABO88566.1| LafU [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 315

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 68/338 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N + IIIK++      P   G+WK+ +ADF   +MAFF+V+WI+  +  + ++A+     
Sbjct: 3   NHEQIIIKRQQRRSSAPKGGGAWKVAFADFTLAMMAFFMVLWILAVSSQEEREAVASRLR 62

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDL----SIDEHITKNSVDLKIGSTNQKKQYQR 126
            +  ++M +    FD  N P       +DL    S+ E ++   V               
Sbjct: 63  DY--SIMDSEANPFDISNSP-----YPVDLGGNPSVLEELSPKFV--------------- 100

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ENYFLPPLSK 180
                                    E+G+ + K  +  +SI  +      EN  +  +  
Sbjct: 101 -------------------------EEGQRMPKHMERNRSIFSDGVSGGYENLLVGKIEG 135

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E         +++ LA  I S    + A N ++    +    G+ I I D     M+ + 
Sbjct: 136 EA--------QMKQLAGFIGSLADQMQAKNNLE---LQLVPQGLRILIRDDDEREMYSRG 184

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S+   P    +L  +  +       + I GHTD++PF      NW LS DRA  A +VL+
Sbjct: 185 SARISPFFRHMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLL 244

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             G+  +R+ ++   +   L+  +DP  S NRRI++LV
Sbjct: 245 AGGMPPERVGQVVAMSDTMLENTADPRGSENRRIELLV 282


>gi|303248925|ref|ZP_07335172.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489648|gb|EFL49584.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 355

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 71/336 (21%)

Query: 15  IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--- 69
           IIIK  KKVA      + GSWK+ YAD +T +MAFFL+MW++N    + K+ +  YF   
Sbjct: 10  IIIKRVKKVA---GGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQEKKEQLASYFNDF 66

Query: 70  ----NPFGKNLMTASKGIFDEQNPPE---RSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
               NP   + +  S G+     PP     S   + D++ID    + S     G   Q  
Sbjct: 67  SLFQNPGPSSQLLDSGGL----GPPAVVVGSQDERPDVAIDRGGKEPS-----GGAGQD- 116

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                                    T D + GK L      E +   +        + E 
Sbjct: 117 -------------------------TGDLDGGKRLEAKRRAEAAAKADAAA----KALEG 147

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            L    +K + +LA ++S T S                   + I I+D+ + P+FD    
Sbjct: 148 QLEQALQKDVPELAGQVSVTQS----------------NDKVRIEIMDKADRPLFDLGGV 191

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             LP+   +L  + +V+      ++I GHTDA  +      NW LS  RA +A +++++ 
Sbjct: 192 TLLPDAKRILAAVTDVIKKEGVKVAIEGHTDAYRYSGT-YTNWDLSAGRALAARRMMIQQ 250

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           G+S D+++ ++G+A  R  +  +  +  NRRI +L+
Sbjct: 251 GLSPDQVAAVTGYADTRPYVPGNLYDPKNRRISLLL 286


>gi|330501121|ref|YP_004377990.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328915407|gb|AEB56238.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 313

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 137/326 (42%), Gaps = 59/326 (18%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIK++        + G+WK+ +ADF   +MA F+V+WII     D  +A     N    
Sbjct: 11  IIIKRRGKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQTQDASRANADMLN---N 67

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L+    GIFD       +S   +DL        + V +++      +   R        
Sbjct: 68  PLVDGGAGIFDG------TSTTPLDL--------DGVPVQVAPRRDPENRAR-------- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                        T   + G  L +    E        +F  PL            ++Q+
Sbjct: 106 -------------TPQEDPGAALGEGLPGEP----RRPHFAEPL------------QMQE 136

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LAK +      L A+  ++    +    G+ I I D     MF++ SS   P    +L++
Sbjct: 137 LAKLMKELALQLDAEANIE---VQVVPQGLRILIKDDAQRFMFNRGSSHLNPHFETLLRR 193

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +  +L      + I GHTD+ P+R +    +NW LS DRA  A  VL+++G+    + ++
Sbjct: 194 LAGILGRVENHLIISGHTDSMPYRGVVGGYNNWNLSGDRALRARNVLVEAGLPTGNVLQV 253

Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338
           +  A     + +DP N ANRRI++L+
Sbjct: 254 AAQADGMPLLPNDPENGANRRIELLL 279


>gi|90422620|ref|YP_530990.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisB18]
 gi|90104634|gb|ABD86671.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 423

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           ETT  G+LIS+ D  N  MF   S+ P P  +  L KI  ++A +   + +RGHTD   +
Sbjct: 299 ETTE-GLLISLTDDVNYGMFATGSAAPSPGLVRALDKITPLIAQNRGQMIVRGHTDNRAY 357

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           R+   DNWRLS  RA+ AY +L++ G+   RI +I G+A  R K  +DP  + NRRI++L
Sbjct: 358 RSAEYDNWRLSTARAHMAYYMLIRGGLDAGRIERIEGYADRRPKDPNDPSAAPNRRIELL 417

Query: 338 V 338
           +
Sbjct: 418 I 418



 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 6/98 (6%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+  + III+++ ++D    N G WKI YADFMT +MAFFLVMW+INAT+ +T++++  Y
Sbjct: 4   QDRPELIIIRRRNSLDVEEKN-GVWKIAYADFMTAMMAFFLVMWLINATNPETRESVAAY 62

Query: 69  FNPFGKNLMTAS-KGIFDEQNPPERSSQNKIDLSIDEH 105
           FNP      T   KGI D    P R    K D   +E 
Sbjct: 63  FNPIKLTDSTPDRKGIHD----PRRVDPGKADEGDNER 96


>gi|114705809|ref|ZP_01438712.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
 gi|114538655|gb|EAU41776.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
          Length = 407

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R  DL   I + L+ +  + +   V       G++IS+ D  ++ MF   S+ P    + 
Sbjct: 257 RTADLKSDIEAELADM-GEGVPSQVEVSEGEGGLMISLADDFDSGMFSVGSAKPNGAAVQ 315

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +++KI  VL      I IRGHTDA PF +   DNWRLS  RA+ AY +L + G+  +R+ 
Sbjct: 316 MMEKIANVLKTRNGRIIIRGHTDARPFTSENYDNWRLSTARAHMAYYMLTRGGLGAERVE 375

Query: 311 KISGFAHHRLKIASDPMNSANRRIDI-LVED 340
            I GFA  + K A +P    NRRI+I LVED
Sbjct: 376 SIEGFADRQPKDAENPEADINRRIEILLVED 406



 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG-KNLMTASKGIFDEQNPPE 91
           WKI +ADFMT +MAFFLVMW+ N+TD+ T+  + QYFNP    +   ASKG+ + Q   E
Sbjct: 40  WKIAFADFMTAMMAFFLVMWLTNSTDEATRTQVAQYFNPIQLTDSTPASKGLKERQAQSE 99

Query: 92  RSSQNK 97
              +N+
Sbjct: 100 VEDENQ 105


>gi|119897740|ref|YP_932953.1| flagellar motor protein MotB [Azoarcus sp. BH72]
 gi|119670153|emb|CAL94066.1| flagellar motor protein MotB [Azoarcus sp. BH72]
          Length = 357

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 50/314 (15%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WKI YADF+T ++AFFL+MW++ +T     + I  YF                 QNP +
Sbjct: 25  AWKIAYADFVTAMIAFFLLMWLLGSTAQGDLEGIADYF-----------------QNPLK 67

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            +            I K   +    S  Q K+                       +  D+
Sbjct: 68  LAMDGGEGSGDSSSIIKGGGEDLTRSVGQVKR---------------GDVEGDRRINLDA 112

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
            KG+    S D +     E N              + + RL DL  +I + +        
Sbjct: 113 AKGRQ-APSADGKGRDEAESN--------------RERSRLIDLKGRIEAIVEANPDLRQ 157

Query: 212 VKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
            K  +L +    G+ I ++D++N PMF+ +S+   P T  +L+ IG  L      +S+ G
Sbjct: 158 FKNQILMDIVNEGLRIQLVDEQNRPMFNSASADLRPYTRDLLRAIGRALNDVGNSVSVSG 217

Query: 271 HTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD++ +    R   NW LS +RA ++ + L+  G+   ++ ++ G A       ++PM+
Sbjct: 218 HTDSAQYAGGERGFSNWELSSNRANASRRELVSGGLLAGKVVRVVGLADTIPLNRANPMD 277

Query: 329 SANRRIDILVEDRQ 342
           + NRRI I+V ++Q
Sbjct: 278 AVNRRISIIVLNKQ 291


>gi|237653884|ref|YP_002890198.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|237625131|gb|ACR01821.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 330

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 51/313 (16%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WKI YADF+T +MAFFL+MW++ +T     + I  YF                 QNP  
Sbjct: 25  AWKIAYADFVTAMMAFFLLMWLLGSTAQGDLEGIADYF-----------------QNP-- 65

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                K+ +   E    +S  +K G  +  ++  ++       + +   +     +  ++
Sbjct: 66  ----LKLAMQGGEGTGDSSSIIKGGGEDLSRKVGQVRRGDTPSTRAINLDAAPARVKSEA 121

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E                          + + I   + + RL DL  K+ + +    +   
Sbjct: 122 EA-------------------------TAQAIAERRERARLIDLKGKLEAVIEANPSLRQ 156

Query: 212 VKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
            K  +L +    G+ I ++D +N PMF  +S+   P T  +L++I   L      +S+ G
Sbjct: 157 FKNQLLIDIVSEGLRIQLVDAQNRPMFTSASAELRPYTRELLREIAAALNDVDNRVSMSG 216

Query: 271 HTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD++ +    R   NW LS +RA +A + L+  G+   ++ ++ G A        DP++
Sbjct: 217 HTDSAQYAGGERGFSNWELSSNRANAARRELVAGGLEAGKMLRVVGLADTAHLNPGDPLD 276

Query: 329 SANRRIDILVEDR 341
            ANRRI I+V +R
Sbjct: 277 PANRRISIVVLNR 289


>gi|34497482|ref|NP_901697.1| flagellar motor protein MotB [Chromobacterium violaceum ATCC 12472]
 gi|34103337|gb|AAQ59699.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472]
          Length = 306

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K + RL  L +KI  T+         K  L  E T  G+ I I+D++N PMFD  SS  L
Sbjct: 112 KEQARLNQLQQKIQQTIDQSELFKQYKNQLKLEMTPEGLKIQIVDEQNRPMFDSGSSRML 171

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSG 303
           P T V+LQ++   L      ISI GHTDA PF        NW LS DRA +A + L+  G
Sbjct: 172 PHTRVLLQQLAPELNQLPNRISISGHTDAKPFGGGQGGYSNWELSADRANTARRELVAGG 231

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++E++I ++ G A     I SD  +  NRRI I+V
Sbjct: 232 LTENKILRVVGLASANPLIKSDVFSPENRRITIVV 266



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
          +WKI YADF+T +MAFFL+MW++ +    T   I +YF    K  ++   G  D
Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSASQGTLNGISEYFKTPLKVALSGGAGAGD 78


>gi|170748396|ref|YP_001754656.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654918|gb|ACB23973.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 286

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 136/336 (40%), Gaps = 83/336 (24%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KKV      ++ G+WKI YADF+T +MAFFL+MW+I+ T  + K  + +YF+P   +
Sbjct: 4   IIIKKVKKAGHAHHGGAWKIAYADFVTAMMAFFLLMWLISMTTQEQKIGLAEYFSPAALS 63

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
             T+  G                                                I Y  
Sbjct: 64  PATSGAG-----------------------------------------------GILY-G 75

Query: 136 NSQQSEHCKNSLTRDSEKG------------KDLCKSTDLEKSI-NKEENYFLPPLSKEK 182
            +  +   K S  RD+E+G              L    D  + + N + N+         
Sbjct: 76  TALDTAGNKPSTPRDAERGSAEREVTARPTSPGLTSELDASRPVANVQANW-------SA 128

Query: 183 ILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           I ++++  + + D+A+         ++ NIV     E T+ G+ +S++DQ    MF + S
Sbjct: 129 IASLRQALQTMPDIAE---------LSKNIV----IEPTKEGVNVSLVDQDGRSMFREGS 175

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLM 300
             P   T  VL+ +   L      +SI G+T  A P    A + W LS  RA +  ++L 
Sbjct: 176 VEPYERTRRVLEALAPALRRMPNRLSITGYTAVARPGSARAGEPWSLSAGRALAVREILS 235

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            +GV  D  S +SG          +P  + NRR+ I
Sbjct: 236 GAGVPNDNFSAVSGRGDTEPVFPDNPYLAPNRRVTI 271


>gi|224824155|ref|ZP_03697263.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224603574|gb|EEG09749.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 302

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + K RL  L KKI S +         K  L  E T  G+ I I+D++N PMFD  S+  L
Sbjct: 107 QEKTRLAKLQKKIESNIEQSAVLKAYKNQLQLEMTPEGLRIQIVDEQNRPMFDSGSANLL 166

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303
           P T  +LQ++G+ L      +SI GHTDA PF        NW LS DRA +A + L+  G
Sbjct: 167 PHTRTILQELGKELNGVANRLSISGHTDAKPFGGAQHGYSNWELSADRANAARRELLAGG 226

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  D+I ++ G A     I S+  +  NRRI I+V +++
Sbjct: 227 LMHDKILRVVGLAAANPLIRSNVFSPENRRIAIVVLNKE 265



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
          II K++      ++ G+WKI YADF+T +MAFFL+MW++ +    T + I +YF    K 
Sbjct: 9  IIVKRIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSQGTLQGIAEYFRTPLKV 68

Query: 76 LMTASKGIFD 85
           +   +G  D
Sbjct: 69 ALAGGQGSGD 78


>gi|260222452|emb|CBA32030.1| Chemotaxis protein motB [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 313

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           A K  + L  LA KI+ST+S           +  E T  G+ I I+D +  PMFD  SS 
Sbjct: 122 AKKDAQTLAALAAKIASTISNNPKMAEFSSQIKLEITPDGLQIQIVDDQRRPMFDIGSSS 181

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMK 301
             P    +L++IG  LA     IS+ GHTD +P+ N AR   NW LS DRA ++ + L+ 
Sbjct: 182 VKPYMRDILKEIGVTLADVDNKISLDGHTDQTPYGNAARGYSNWELSADRANASRRELIA 241

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +G+ E++++++ G A   L    +P++ ANRRI ILV
Sbjct: 242 AGMPENKLARVVGMASSLLADPQNPLSPANRRISILV 278



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K+V       + G+WKI YADF+T +MAFFL+MW++ +T +  KK I  YF
Sbjct: 11 IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDKKGISDYF 64


>gi|45442813|ref|NP_994352.1| hypothetical protein YP_3056 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809034|ref|YP_652950.1| hypothetical protein YPA_3043 [Yersinia pestis Antiqua]
 gi|150260228|ref|ZP_01916956.1| lateral flagellar proton motor protein B [Yersinia pestis
           CA88-4125]
 gi|162420691|ref|YP_001604823.1| hypothetical protein YpAngola_A0200 [Yersinia pestis Angola]
 gi|165924864|ref|ZP_02220696.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939072|ref|ZP_02227624.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008977|ref|ZP_02229875.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212177|ref|ZP_02238212.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398344|ref|ZP_02303868.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419079|ref|ZP_02310832.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167466315|ref|ZP_02331019.1| flagellar motor protein B [Yersinia pestis FV-1]
 gi|170022980|ref|YP_001719485.1| hypothetical protein YPK_0731 [Yersinia pseudotuberculosis YPIII]
 gi|218927933|ref|YP_002345808.1| hypothetical protein YPO0747 [Yersinia pestis CO92]
 gi|229837433|ref|ZP_04457596.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A]
 gi|229840644|ref|ZP_04460803.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842804|ref|ZP_04462956.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|294502809|ref|YP_003566871.1| flagellar motor protein [Yersinia pestis Z176003]
 gi|45437679|gb|AAS63229.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108780947|gb|ABG15005.1| putative chemotaxis membrane protein [Yersinia pestis Antiqua]
 gi|115346544|emb|CAL19421.1| putative chemotaxis membrane protein [Yersinia pestis CO92]
 gi|149289636|gb|EDM39713.1| lateral flagellar proton motor protein B [Yersinia pestis
           CA88-4125]
 gi|162353506|gb|ABX87454.1| flagellar motor protein B [Yersinia pestis Angola]
 gi|165913028|gb|EDR31653.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923064|gb|EDR40215.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992316|gb|EDR44617.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206923|gb|EDR51403.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963073|gb|EDR59094.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050848|gb|EDR62256.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|169749514|gb|ACA67032.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229690071|gb|EEO82128.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697010|gb|EEO87057.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705556|gb|EEO91566.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A]
 gi|262360841|gb|ACY57562.1| flagellar motor protein [Yersinia pestis D106004]
 gi|262364786|gb|ACY61343.1| flagellar motor protein [Yersinia pestis D182038]
 gi|294353268|gb|ADE63609.1| flagellar motor protein [Yersinia pestis Z176003]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 134/312 (42%), Gaps = 69/312 (22%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88
           G+WK+ +ADF   +MA F+V+WI+    ++ ++ I    N          K IF +Q+  
Sbjct: 27  GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77

Query: 89  -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P +S      LS       NS+D                                   
Sbjct: 78  SIPSKSKSGGGKLS-------NSID----------------------------------- 95

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                 GK+  K T    +I   E    P  S E+++  K +  +++L++ I    S   
Sbjct: 96  ------GKEQAKETKSNLAIEVPE----PEQSLEEVVD-KSRHEMEELSRIIMQITS--- 141

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A N    +  E    G+ I I D +   MF +SS++  P    +L ++          I 
Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201

Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDAS +R+ +  +NW LS +RA  A++ L+  G+ E R+ +I+  A   L   +DP
Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVNGGLDEGRVLQINAMADQMLLDPTDP 261

Query: 327 MNSANRRIDILV 338
           + + NRRI+I+V
Sbjct: 262 LAAKNRRIEIMV 273


>gi|157147077|ref|YP_001454396.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895]
 gi|157084282|gb|ABV13960.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895]
          Length = 315

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 52/333 (15%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           +N+  +   IIK+         + G+WK+ +ADF   +MA F+V+WI+ A  ++ +K I 
Sbjct: 2   RNRSKEHTTIIKRSSRKSHDEFHGGAWKVAFADFTLAMMALFMVLWIMGAVTEEERKEIV 61

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              N  G+                          S+ E  +   +  K G   Q      
Sbjct: 62  SMLN--GE--------------------------SVFEGNSLTPITQKEGQGGQ------ 87

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                  L +S+  +  K S T +S K       TD EK + ++        S + + A 
Sbjct: 88  -----LSLIDSRHPKTPKPSKTAESSK-----PLTDAEKQVAQQAKQ---TESLDDVNAR 134

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            R + ++DLA+ I    S   A   +K    E    G+ I + D +   MF +SS+I  P
Sbjct: 135 SRNE-IEDLARIIMKITSTYDAQANLK---MEIVPQGLRILVSDDQKREMFQRSSAILTP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305
               +L +    L      I I GHTDA+ FR+ +  +NW LS +RA  A  VL   G+ 
Sbjct: 191 FFKRLLTEFAPELNKIDNKIIITGHTDATRFRDQVLYNNWNLSGERAMQARAVLTTGGLD 250

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +I ++SG A   L     P++SANRRI+I+V
Sbjct: 251 QSKILQVSGMADQMLLDPQHPLSSANRRIEIMV 283


>gi|148554180|ref|YP_001261762.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148499370|gb|ABQ67624.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 334

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 145/344 (42%), Gaps = 79/344 (22%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           +N+   + IIIKK VA     ++ G+WK+ YADF+T +MAFFL+MWI+ AT++  +K   
Sbjct: 10  RNEPEPRPIIIKKIVAEGHGGHHGGAWKVAYADFVTAMMAFFLLMWILGATNEKQRK--- 66

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
                                              I ++ T   V  K  S         
Sbjct: 67  ----------------------------------GIADYFTPTMVQFKEKSAGS------ 86

Query: 127 LENNIF----------YLSNSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFL 175
             N IF          Y   + Q+     S+ +D+  G KD   S    KS ++     L
Sbjct: 87  --NGIFGGESVVDKDNYPHRAAQTGSKSISIPKDASGGEKDGAGSA---KSRDRVAFQKL 141

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
             L + K+ A  R      LAK +S+             V    TR G+ I ++DQ +  
Sbjct: 142 KLLLQAKMAADPR------LAKMMSN-------------VRMVETREGLRIDLVDQADFA 182

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294
           MF   +     E   +++++ EV   +   + +RGHTDA P+ +    +NW LS  RA +
Sbjct: 183 MFRSGTDELSSEARALMKQVAEVTNFADNSVIVRGHTDAMPYSKGRTVNNWTLSAARAEA 242

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             + L   GV+  R ++I G A     +A DP +  NRR+ I +
Sbjct: 243 TRRALSDFGVANTRFARIEGVADREPYVAGDPYDPRNRRMSITL 286


>gi|126463722|ref|YP_001044836.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559779|ref|ZP_08414101.1| MotB2 [Rhodobacter sphaeroides WS8N]
 gi|126105386|gb|ABN78064.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277491|gb|EGJ22806.1| MotB2 [Rhodobacter sphaeroides WS8N]
          Length = 278

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 144/339 (42%), Gaps = 70/339 (20%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  
Sbjct: 3   GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLAD 62

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQ 125
           YFNP                        N++    +     NSV  D  +  T       
Sbjct: 63  YFNP--------------------TIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA--- 99

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                    +N + +   K S     ++G D  +   LE     E    L   S E   +
Sbjct: 100 ---------ANDRATAELKAS-GETGQEGADAAEQKQLE-----EVEKMLKARSGE---S 141

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP- 244
           M  ++ L+ +  +I+    GLV                  I I D  + P+F   +  P 
Sbjct: 142 MTMQRLLRHVVTRITD--EGLV------------------IEIFDLPDVPLFFGDTDQPE 181

Query: 245 --LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             LP+   + + + E+L  +T  I++ GH  + P   I    W +S  RA     +L   
Sbjct: 182 AVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESE 238

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           G+  +R+ ++SGFA  ++ +  DPM   N R+++++  R
Sbjct: 239 GLPGERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 276


>gi|261341475|ref|ZP_05969333.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316]
 gi|288316271|gb|EFC55209.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316]
          Length = 306

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 62/309 (20%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WK+ +ADF   +MA F+V+WI+ +  ++ +K I    N          + IFD Q   
Sbjct: 27  GAWKVAFADFTLAMMALFMVLWIMGSVTEEERKEIVSQLN---------GESIFDGQ--- 74

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                     ++      N V  KI  T ++              +    +H +    ++
Sbjct: 75  ----------TLSPITQPNGVGGKIAVTEKR--------------DRGDHKHPQ----KE 106

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           +     + KS  L+   ++ +N                   ++DLA+ I    S   A +
Sbjct: 107 TPTPAAMAKSASLDDVKSRSQN------------------EIEDLARIIMKITSAYDAQS 148

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
            +K    E    G+ I I D +   MF +SS+I  P    +L +    L      I I G
Sbjct: 149 NLK---IEIVPQGLRILITDDQKREMFQRSSAILTPFFKRLLTEFAPALNKIDNKIIITG 205

Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HTDA+ FR+    +N+ LS +RA  A +VL  +G+ +D++ ++SG A   L   ++P++S
Sbjct: 206 HTDATRFRDQDLYNNYNLSGERAMQARKVLTHAGLDQDKVLQVSGMADQMLLDPANPLSS 265

Query: 330 ANRRIDILV 338
           +NRRI+I+V
Sbjct: 266 SNRRIEIMV 274


>gi|260779337|ref|ZP_05888229.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605501|gb|EEX31796.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 330

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 136/329 (41%), Gaps = 66/329 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+   +DD   + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +      
Sbjct: 7   VVFKRTKTVDDDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLQ---- 62

Query: 75  NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                S  +FD+   NP + S S + IDL+ D  +                         
Sbjct: 63  -----SASVFDKSYGNPFDTSQSISPIDLAADSSV------------------------- 92

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +   S H  +S  +   +G               E +  +P            ++R
Sbjct: 93  ---PSRHDSTHIVSSFFQGDGEGP--------------ETDSLIPG-------TFDTQER 128

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L  LAK I   +  + A   V   +   T  G+ I + D     MF +  S   P    +
Sbjct: 129 LAALAKVIKEAVRQISAQGNVNVTV---TPQGLRIVLQDDYKQHMFGRGGSELTPFFEDL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +  V       + I GHTD++ F+     R NW LS  RA +A   L+  G+ ++R+
Sbjct: 186 LLALAPVFKRVENPLIISGHTDSTRFKGHVERRSNWELSASRANAARHTLVAGGMPDERV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +++G +   L    +P +S NRRI++ +
Sbjct: 246 LQVTGMSDRALLNGDEPESSENRRIELFI 274


>gi|296534172|ref|ZP_06896663.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265499|gb|EFH11633.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 157

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 1/130 (0%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           ++ + +L E TR G+ I ++D    P+F    + P      +L ++  VLA     + I 
Sbjct: 16  DLARQLLIEQTREGLRIQLVDADGQPVFATGQAAPNQRGRALLLRVATVLARLPYGLDIA 75

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDA+PFR    R NW LS +RA +A +VL+++G++E+R+  ++G A   L     P++
Sbjct: 76  GHTDAAPFRGGGDRSNWELSAERAGAARRVLIEAGIAEERLRAVAGRADRDLLSPDRPLD 135

Query: 329 SANRRIDILV 338
           +ANRR+ ILV
Sbjct: 136 AANRRVSILV 145


>gi|120597323|ref|YP_961897.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557416|gb|ABM23343.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
          Length = 305

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 136/328 (41%), Gaps = 70/328 (21%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70
           IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY     N
Sbjct: 8   IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P G              NP E S  + I   ID                       LE N
Sbjct: 68  PTGP------------INPFELSQSSSI---ID-----------------------LEGN 89

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +        S     +     E+G  +    D ++ +               +LA +  +
Sbjct: 90  MSIAPTIIPSHPSPRAGAEGIEEGALIPGQFDTQEQLT--------------VLARQLNR 135

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +Q          S  +A+NI   ++ +    GI I I D  N  MF + S+   P    
Sbjct: 136 VVQ----------SSSMAENITVTIVPQ----GIRILIHDNVNRFMFTRGSAQMQPYFEE 181

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++ 
Sbjct: 182 LLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQVI 241

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
           +++G A     I SD   +ANRRI+ L+
Sbjct: 242 QVTGMADQVPYITSDTAAAANRRIEALI 269


>gi|264676590|ref|YP_003276496.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|262207102|gb|ACY31200.1| OmpA/MotB [Comamonas testosteroni CNB-2]
          Length = 355

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L  K+ S ++     N  +  +  E T  G++I I+D +N PMFD  S++  P  
Sbjct: 125 QRLHALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
             +L++IG  + ++   IS+ GHTDA+P+ N  R   NW LS DRA ++ + L+ +G+  
Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPL 244

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           D+++++ G A   L +  +P  + NRRI I V
Sbjct: 245 DKLARVVGMASSDLLLPEEPRAAQNRRITITV 276



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          II K+V      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  YFN
Sbjct: 9  IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63


>gi|299531265|ref|ZP_07044675.1| OmpA/MotB [Comamonas testosteroni S44]
 gi|298720672|gb|EFI61619.1| OmpA/MotB [Comamonas testosteroni S44]
          Length = 355

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L  K+ S ++     N  +  +  E T  G++I I+D +N PMFD  S++  P  
Sbjct: 125 QRLHALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
             +L++IG  + ++   IS+ GHTDA+P+ N  R   NW LS DRA ++ + L+ +G+  
Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPL 244

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           D+++++ G A   L +  +P  + NRRI I V
Sbjct: 245 DKLARVVGMASSDLLLPEEPRAAQNRRITITV 276



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          II K+V      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  YFN
Sbjct: 9  IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63


>gi|186896751|ref|YP_001873863.1| hypothetical protein YPTS_3453 [Yersinia pseudotuberculosis PB1/+]
 gi|186699777|gb|ACC90406.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 129/312 (41%), Gaps = 69/312 (22%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88
           G+WK+ +ADF   +MA F+V+WI+    ++ ++ I    N          K IF +Q+  
Sbjct: 27  GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77

Query: 89  -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P +S      LS       NS+D                       N Q  E   N  
Sbjct: 78  SIPSKSKSGGGKLS-------NSID----------------------GNEQAKETKSNLA 108

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
               E  K L +  D                        K +  +++L++ I    S   
Sbjct: 109 IEVPEPEKSLEEVVD------------------------KSRHEMEELSRIIMQITS--- 141

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A N    +  E    G+ I I D +   MF +SS++  P    +L ++          I 
Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201

Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDAS +R+ +  +NW LS +RA  A++ L+  G+ E R+ +I+  A   L   +DP
Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDP 261

Query: 327 MNSANRRIDILV 338
           + + NRRI+I+V
Sbjct: 262 LAAKNRRIEIMV 273


>gi|220934494|ref|YP_002513393.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995804|gb|ACL72406.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 290

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 1/163 (0%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDK 239
           E++   + K+RL+ L + +   +    A    K  +L + T  G+ I I+D+ N PMFD 
Sbjct: 110 EELAEQQEKERLEALMQALEEAIERSQALEPFKDQLLLDITPEGLRIQIVDKENRPMFDL 169

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+     +  +LQ++G ++      ISI GHTDA PF      NW LS DRA +A + L
Sbjct: 170 GSAQLRGYSTAILQELGGLINQVPNKISITGHTDARPFLRPNYSNWELSSDRANAARRAL 229

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  G+ E +I ++ G A   L   ++P N  NRRI I+V  R+
Sbjct: 230 VSGGMDEAKIGRVVGLASTVLFDKANPENPINRRISIIVMTRE 272



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
          Q I++KK   I    ++ G+WKI +ADF T +MAFFL++WI+  TDD+ K AI ++F NP
Sbjct: 8  QPIVVKK--IIKKGGHHGGAWKIAFADFATAMMAFFLLLWILGFTDDEQKAAISEFFQNP 65


>gi|152996653|ref|YP_001341488.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837577|gb|ABR71553.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 301

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 140/326 (42%), Gaps = 72/326 (22%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++I++   I    ++ G+WKI  ADF   +MAFFLV+WI++    +  ++IE YF     
Sbjct: 8   LVIRRVKKIKKGGHHGGAWKIALADFALAMMAFFLVLWIMSVASPEELRSIEGYF----- 62

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
                       Q+P   S+            + N +DL  G +  K   ++L+     L
Sbjct: 63  ------------QDPTGASTAG---------YSANPIDL--GGSPAKSAEKKLD-----L 94

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
              Q       S  +    G D  +S    KSIN   N     +SK   L  ++K     
Sbjct: 95  QLPQAGSIDVQSRDKFLGNGPDSAES----KSIN---NMLREEMSKMNTLLSQQKN---- 143

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
                               +  E T  G+ I+++D  + PMF++ S+  +P+    L  
Sbjct: 144 --------------------MRIEITPLGVRITLLDDPDKPMFERGSARMMPDIENTLLS 183

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  +    T  I I GHTD+S F     DNW LS  RA +A  +L + GV + RI+++ G
Sbjct: 184 MAPIFNKVTNPIVITGHTDSSKFGGGRVDNWDLSALRANAARHILEEGGVEDKRIAQVIG 243

Query: 315 FA----HHRLKIASDPMNSANRRIDI 336
            +    ++RL    D  ++ NRRI I
Sbjct: 244 LSDTIPYNRL----DTDSAENRRISI 265


>gi|126738556|ref|ZP_01754261.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6]
 gi|126720355|gb|EBA17061.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6]
          Length = 278

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 79/340 (23%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   IIIKKK       ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  Y
Sbjct: 4   QSNMAPIIIKKKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63

Query: 69  FNP--------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           F+P         G N       +F E   P+ S     D+        N +D        
Sbjct: 64  FSPSIPLSRVSGGGNGAFQGDSMFTEDIQPQ-SGTGATDM--------NPMD-------- 106

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                           +QQ++    +   DS+K ++  K   +E+ +             
Sbjct: 107 ----------------AQQAQ--GETGVSDSQKAEEDSKLRAIEEQLQGR--------GG 140

Query: 181 EKILAMKRKKRLQDLAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           E ++++       ++A+ I + +S  GL+ +      LFET                +F+
Sbjct: 141 ESMVSI-------EMARHIITRISDEGLIIE------LFET------------ETAKLFE 175

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             ++ P P    +++ +  V A     +++ GH  + P        W +S  RA +A  +
Sbjct: 176 DGTAEPTPLFRDLVRMVSRVSATVANEVAVSGHIQSQPVVIAQNPVWGVSHQRADAARTL 235

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           L   G+  +RI +++G+A  +L  A +PM+  N R++I++
Sbjct: 236 LESGGMKANRIQRVTGYADRKLA-AQNPMSPRNNRVEIIL 274


>gi|149203099|ref|ZP_01880070.1| OmpA/MotB [Roseovarius sp. TM1035]
 gi|149143645|gb|EDM31681.1| OmpA/MotB [Roseovarius sp. TM1035]
          Length = 287

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 62/334 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N + +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  Y
Sbjct: 4   QSNAKPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                 P  R+S         E +      L+ GS   +       
Sbjct: 64  FSP---------------TVPISRTSGGGDGAFGGESVFSQETLLQSGSGASQP------ 102

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                L+ S Q    +  L     +G +L    + +          L   S E +     
Sbjct: 103 -----LATSSQQVRGEMGLV----EGGNLSADQEADAQAFSTIEAMLTGRSGESM----- 148

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                             V+D++++ ++   T  G++I I +     +F+   + P    
Sbjct: 149 ------------------VSDDLLRHIVTRVTDEGLVIEIFELPGALLFEPDQTSP---- 186

Query: 249 IVVLQKIGEVLAHSTEVI----SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             +LQ +  +LA +  ++    ++ GHT A P   +    W LS  R     Q L  +G+
Sbjct: 187 TRLLQDLSMLLASAANLVINDAALAGHTRARPITLVRNPVWDLSTARVDQFRQRLEDAGL 246

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  RI +I+G A  R    SDPM+  N R+++++
Sbjct: 247 AAKRIRRIAGHA-DRSPAVSDPMDLRNNRLELIL 279


>gi|91794978|ref|YP_564629.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91716980|gb|ABE56906.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 330

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 139/324 (42%), Gaps = 44/324 (13%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIK+      + ++ G+WK+ +ADF   +MA F+V+WI+   D D +  I QY     +
Sbjct: 8   IIIKRGRRSKRSASHGGAWKVAFADFTLAMMALFMVLWIMQIADQDERSQIVQYL----R 63

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             M AS             + N  D++    I    +D +     Q+             
Sbjct: 64  GEMYAS------------GAMNPFDVAQSSSI----IDFEGSPAIQQA---------IIT 98

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           S     E    ++  +   G++   +         E N  +P     +   +   ++L  
Sbjct: 99  SAGSGPERAGPAMHNNIPAGEEEPNAGQ-----GPEFNAMVPGQYDTQAQLVMLARQLNH 153

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + ++ S      +ADNI   ++ +    GI I I D  +  MF + S+        +L  
Sbjct: 154 VVQQSS------MADNIAVTLVPQ----GIRILIHDNIDRFMFTRGSAQMQVYFEDLLLA 203

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +G VL   T  + I GHTD++P+      NW LS  RA  A +VL   GV  +++ +++G
Sbjct: 204 LGPVLGQVTNAMVISGHTDSTPYVGTEFTNWELSSKRALLARRVLEFGGVKRNQVIQVTG 263

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A     I  +P  +ANRRI++L+
Sbjct: 264 MADQVAYIPQEPAAAANRRIEVLI 287


>gi|262273510|ref|ZP_06051324.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
 gi|262222488|gb|EEY73799.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
          Length = 340

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 44/307 (14%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ +ADF   +MAFF+V+WI+  T  + ++ I+         +  +   +FD +N P 
Sbjct: 26  AWKVAFADFAIAMMAFFMVLWIMEITSKEEREEIQYRLQQ--STIFESIDNLFDIRNSP- 82

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                 ID   +    +N ++  +  T++                        NSL    
Sbjct: 83  ----FPIDFGGEASPFENPINSTLSGTSE----------------------LGNSLHEQV 116

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
            +G+    +   E +++  E  +L               +L  LA  +   ++ L A   
Sbjct: 117 PQGEKGNNAGQGENAMSVMEGQYL------------NAAQLSGLAIALKEIVASLDA--- 161

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           ++ +  +    G+ I I D +   MF + S+   P    +L  +   L      + I GH
Sbjct: 162 MENIHLDVVPQGLRIQIQDSKRNVMFQRGSAQMTPFFEDILYALSPKLGKIQNRLIISGH 221

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TD++ F   A  NW LS DRA  A QV++ SG+ + ++ ++   A   L   +DP +  N
Sbjct: 222 TDSTVFSTQAYSNWELSGDRALKARQVMVGSGLPQQQVLQVVAMADRTLLDEADPQSGKN 281

Query: 332 RRIDILV 338
           RRI+I+V
Sbjct: 282 RRIEIMV 288


>gi|153948417|ref|YP_001399654.1| hypothetical protein YpsIP31758_0662 [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959912|gb|ABS47373.1| flagellar motor protein B [Yersinia pseudotuberculosis IP 31758]
          Length = 303

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 69/312 (22%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88
           G+WK+ +ADF   +MA F+V+WI+    ++ ++ I    N          K IF +Q+  
Sbjct: 27  GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77

Query: 89  -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P +S      LS       NS+D                                   
Sbjct: 78  SIPSKSKSGGGKLS-------NSID----------------------------------- 95

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                 GK+  K T    +I   E    P  S E+++  K +  +++L++ I    S   
Sbjct: 96  ------GKEQAKETKSNLAIEVPE----PEQSLEEVVD-KSRNEMEELSRIIMQITS--- 141

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A N    +  E    G+ I I D     MF +SS++  P    +L ++          I 
Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDLQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201

Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDAS +R+ +  +NW LS +RA  A++ L+  G+ + R+ +I+  A   L   +DP
Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVSGGLDKGRVLQINAMADQMLLDPTDP 261

Query: 327 MNSANRRIDILV 338
           + + NRRI+I+V
Sbjct: 262 LAAKNRRIEIMV 273


>gi|78485775|ref|YP_391700.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364061|gb|ABB42026.1| Flagellar motor protein MotB [Thiomicrospira crunogena XCL-2]
          Length = 296

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + K +++DL ++I   +S     N +K  L  E T  G+ + ++D R  PMF     +P 
Sbjct: 110 QEKAQMEDLKRQIEQKISENPITNELKNQLKIEVTPNGLQVQVLDDRKRPMFGSGVDLPK 169

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGV 304
                +L+++G VLA +   ISI GHTD+S +  N    NW LS DRA +A ++L+  GV
Sbjct: 170 DYAAKLLKEVGSVLAQTNNRISIAGHTDSSGYHSNAEYTNWELSADRANAARRLLLDGGV 229

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            E +I+++ G +        +P N  NRRI I+V +++ 
Sbjct: 230 GEKKIAQVVGLSDTVPFDKENPYNPRNRRISIIVLNKEA 268



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           +Q IIIK+        +  G+WK+ +ADFMT  MAFFL++WI++  +D+  KA+ +YF  
Sbjct: 4   EQSIIIKRLTKCPHCAHG-GAWKVAFADFMTAAMAFFLMLWILSGVNDEEMKAMAEYFR- 61

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
               ++ AS  +        +SS + ID+   +   K S++ + G    +++ Q
Sbjct: 62  -DPTVIEASPQVLVPSKEAGQSSDSMIDMGGFKDTPKGSIENEDGEAKAQEKAQ 114


>gi|221069302|ref|ZP_03545407.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220714325|gb|EED69693.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 353

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L  K+ + ++     N  +  +  E T  G++I I+D +N PMFD  S++  P  
Sbjct: 125 QRLHALKAKVDTMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
             +L++IG  + ++   IS+ GHTDA+P+ N  R   NW LS DRA ++ + L+ +G+  
Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVSAGMPL 244

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           D+++++ G +   L +  +P  + NRRI I V
Sbjct: 245 DKLARVVGMSSSDLLLPEEPRAAQNRRITITV 276



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          II K+V      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  YFN
Sbjct: 9  IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63


>gi|221640801|ref|YP_002527063.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131]
 gi|221161582|gb|ACM02562.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131]
          Length = 285

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 80/347 (23%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G   Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +  
Sbjct: 7   GMAGQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQR-- 64

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV-------DLKIGS 117
                           KG+ D  NP      N++    +     NSV           G+
Sbjct: 65  ----------------KGLADYFNPT--IPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA 106

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            N +   +R                 +  +    ++G D  +   LE+            
Sbjct: 107 ANDRATAER---------------KARGEM---GQEGADAAEQKQLEEV----------- 137

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              EK+L  +  +               +    +++ V+   T  G++I I D  + P+F
Sbjct: 138 ---EKMLKARSGE--------------SMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLF 180

Query: 238 DKSSSIP---LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
              +  P   LP+   + + + E+L  +T  I++ GH  + P   I    W +S  RA  
Sbjct: 181 FGDTDQPEAVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQR 237

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
              +L   G+ ++R+ ++SGFA  ++ +  DPM   N R+++++  R
Sbjct: 238 MRGLLESEGLPDERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 283


>gi|152980289|ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille]
 gi|151280366|gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 328

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           R K L++  +K   T+ GL        +L + T  G+ I I+D++N PMF  + +   P 
Sbjct: 125 RLKALKERIEKAIDTIPGL--QQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305
           T V+L +I ++L      IS+ GHTDA+P+ +  +   NW LS DRA ++ + L+  G++
Sbjct: 183 TKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMA 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E+++ ++ G +   L  +SDP+N  NRRI I+V +++ 
Sbjct: 243 ENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKA 280



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          II K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  +F+
Sbjct: 9  IIIKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQGIADFFS 63


>gi|307293778|ref|ZP_07573622.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879929|gb|EFN11146.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 351

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 62/334 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+   + II+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +     
Sbjct: 9   NEPEPRPIIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR----- 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY--Q 125
                        KG+ D                   + T   V +K GS      +   
Sbjct: 64  -------------KGLAD-------------------YFTPTLVQVKEGSAGSNGMFGGD 91

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
            +     Y +   Q  +   ++ RD+   KD        K+    +      + KE    
Sbjct: 92  SMTAKENYPTTGGQG-NLAITIPRDASGTKDQGG-----KATKAADRAKFESIKKELEAR 145

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           M R+  +  L K                 V F  TR G+ I +ID+ +  MF   +   L
Sbjct: 146 MARRHGINKLRKN----------------VRFTETREGLRIDLIDEADFAMFAMGTDRLL 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGV 304
           P+   ++ ++ + +      + +RGHTD  P+ +    +NW LS  RA +  + L  SG+
Sbjct: 190 PQARELVDEVAKTIRTMPNPLIVRGHTDGLPYSSGQTMNNWMLSSARAEATRKALAASGI 249

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             DR ++I G A        D  +  NRR+ I++
Sbjct: 250 GNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283


>gi|146284108|ref|YP_001174261.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
 gi|145572313|gb|ABP81419.1| chemotaxis protein MotB [Pseudomonas stutzeri A1501]
          Length = 336

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMF   S+   P    +L  + E +A     ISI GHTDA
Sbjct: 143 ILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFEDILLALVETIAAVPNKISISGHTDA 202

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            PF       NW LS  RA +A + L+  G  E++I+++ G+A   L    DP N  NRR
Sbjct: 203 KPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQIARVVGYASSALFDRKDPFNPVNRR 262

Query: 334 IDILV 338
           IDILV
Sbjct: 263 IDILV 267



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +N Q II+K  KKVA     ++ G+WKI +ADF T +MAFFLVMW++++   + KK I  
Sbjct: 2   DNTQPIIVKRVKKVAGG---HHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISG 58

Query: 68  YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           YF +P G    +AS  + D    P  S    ++  ++   ++  +D +   T
Sbjct: 59  YFQDPIGFT-ESASPHVIDLGGTPTPSPDRTLNPELEPAQSEAQIDAQQAET 109


>gi|153836044|ref|ZP_01988711.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810]
 gi|149750798|gb|EDM61543.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810]
          Length = 330

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D  +                   
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                     +   S H  +S  +    G ++              N  +P         
Sbjct: 93  ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + +   N    V    T  G+ I + D     MF +  +   
Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G
Sbjct: 180 PFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +DR+ +++G +   L    +P +S NRRI++ +
Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274


>gi|28901412|ref|NP_801067.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362966|ref|ZP_05775835.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030]
 gi|260880253|ref|ZP_05892608.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034]
 gi|260895370|ref|ZP_05903866.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466]
 gi|1346409|sp|Q03478|LAFU_VIBPA RecName: Full=Chemotaxis protein LafU
 gi|677910|gb|AAA62355.1| LafU [Vibrio parahaemolyticus]
 gi|1518954|gb|AAB07358.1| lateral flagellar MotB [Vibrio parahaemolyticus]
 gi|28809959|dbj|BAC62900.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085707|gb|EFO35402.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466]
 gi|308092138|gb|EFO41833.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034]
 gi|308111945|gb|EFO49485.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030]
          Length = 330

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D  +                   
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                     +   S H  +S  +    G ++              N  +P         
Sbjct: 93  ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + +   N    V    T  G+ I + D     MF +  +   
Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G
Sbjct: 180 PFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +DR+ +++G +   L    +P +S NRRI++ +
Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274


>gi|260429438|ref|ZP_05783415.1| OmpA/MotB [Citreicella sp. SE45]
 gi|260420061|gb|EEX13314.1| OmpA/MotB [Citreicella sp. SE45]
          Length = 291

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 63/328 (19%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           +IIK+K       ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  Y      
Sbjct: 17  VIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY------ 70

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
                    F       R S         E +   +V  ++G+                 
Sbjct: 71  ---------FSPTIAVSRMSGGGDGTLGGESVFTEAVLPRVGT----------------- 104

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +  +   +N     S+ G+         +   K E    P  S E +      K L+D
Sbjct: 105 GATSLNPMAQNRARGSSDPGQ--------ARETGKAEE---PGASDEDL------KALED 147

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   +      ++ DN+++ ++   T  G+++ + +  +  +FD++ + P+P    +L+ 
Sbjct: 148 LL--MGRGGETMIDDNLMRHIVTRVTDEGLVVELFETEDARLFDETGA-PMP----LLRD 200

Query: 255 IGEVLAHSTEVI----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +  V+A  + ++    ++ GHT A P   +ARD +W +S  RA    Q+L+  G+   RI
Sbjct: 201 LAGVIARVSRLVTNPLAVEGHTTAFPI-VLARDPSWDVSTRRADDFRQLLLAGGLDRKRI 259

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDIL 337
            +++  A  R    S+PM++ N R++++
Sbjct: 260 DRVTAHA-DREPSQSNPMDARNNRLEVI 286


>gi|218461676|ref|ZP_03501767.1| flagellar motor protein MotB [Rhizobium etli Kim 5]
          Length = 75

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 57/73 (78%)

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ ++P
Sbjct: 1   AIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPAEP 60

Query: 327 MNSANRRIDILVE 339
            N+ANRRI+ILV+
Sbjct: 61  FNAANRRIEILVQ 73


>gi|328469346|gb|EGF40292.1| chemotaxis LafU protein [Vibrio parahaemolyticus 10329]
          Length = 330

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D  +                   
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                     +   S H  +S  +    G ++              N  +P         
Sbjct: 93  ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + +   N    V    T  G+ I + D     MF +  +   
Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G
Sbjct: 180 PFFEDLLLALAPLFERVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +DR+ +++G +   L    +P +S NRRI++ +
Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274


>gi|77464880|ref|YP_354384.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389298|gb|ABA80483.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1]
          Length = 278

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 70/339 (20%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K    
Sbjct: 3   GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQ 125
                         G+ D  NP      N++    +     NSV  D  +  T       
Sbjct: 59  --------------GLADYFNP--TIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA--- 99

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                    +N + +   K S     ++G D  +   LE+               EK+L 
Sbjct: 100 ---------ANDRATAELKAS-GEMGQEGADAAEQKQLEEV--------------EKMLK 135

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP- 244
            +  +               +    +++ V+   T  G++I I D  + P+F   +  P 
Sbjct: 136 ARSGE--------------SMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPE 181

Query: 245 --LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             LP+   + + + E+L  +T  I++ GH  + P   I    W +S  RA     +L   
Sbjct: 182 AVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESE 238

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           G+  +R+ ++SGFA  ++ +  DPM   N R+++++  R
Sbjct: 239 GLPGERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 276


>gi|160896052|ref|YP_001561634.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160361636|gb|ABX33249.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 345

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 2/123 (1%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I I+D++N PMFD  S++  P    +L+++G  LA +   IS+ GHTDA+P+
Sbjct: 154 DVTPDGLQIQIVDEQNRPMFDSGSAMVKPYMRDILREVGAALAGAENRISLSGHTDAAPY 213

Query: 278 RNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            N  R   NW LS DRA ++ + L+ +G+  +++++I+G A   L +  DP    NRRI 
Sbjct: 214 GNADRGYSNWELSSDRANASRRELVAAGMPLNQLARITGLASSDLLLPDDPRAPQNRRIT 273

Query: 336 ILV 338
           I V
Sbjct: 274 ITV 276



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q IIIK+       P+  G+WKI YADF+T +MAFFL+MW++ +T     + I  YF+  
Sbjct: 7  QPIIIKRVKKTAHAPHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65

Query: 73 GKNLMTASKG 82
           K  M    G
Sbjct: 66 LKVAMAGGDG 75


>gi|146294532|ref|YP_001184956.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145566222|gb|ABP77157.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 305

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 70/328 (21%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70
           IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY     N
Sbjct: 8   IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P G              NP E S  + I   ID                       LE N
Sbjct: 68  PTGP------------INPFELSQSSSI---ID-----------------------LEGN 89

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +        S     +     E+G  +    D ++ +               +LA +  +
Sbjct: 90  MSIAPAIIPSHPSPRAGAEGIEEGALIPGQFDTQEQLT--------------VLARQLNR 135

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +Q      SS+++    +NI   ++ +  R  ILI   D  N  MF + S+   P    
Sbjct: 136 VVQ------SSSMA----ENITVTIVPQGIR--ILIH--DNVNRFMFTRGSAQMQPYFEE 181

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++ 
Sbjct: 182 LLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQVI 241

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
           +++G A     I SD   +ANRRI+ L+
Sbjct: 242 QVTGMADQVPYITSDTAAAANRRIEALI 269


>gi|315179650|gb|ADT86564.1| lateral flagellar motor protein B [Vibrio furnissii NCTC 11218]
          Length = 330

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 135/331 (40%), Gaps = 60/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+     D P++ G+WK+  ADFM  LMA FLV+W++   + + +KAI  + 
Sbjct: 2   QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +         S  +FD      RS  N  D S     + + +DL   S+           
Sbjct: 62  H---------SASVFD------RSYGNPFDTSQ----SISPIDLASESS----------- 91

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               + +   + H   S    +  G               E +  +P            +
Sbjct: 92  ----VPSKHDANHTVTSFYNGNGNGP--------------ESDAIIPG-------NFDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK I + +  + A      V    T  G+ I + D     MF +  +   P   
Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       + I GHTD++ F  R   R NW LS +RA  A Q L+  G+ E 
Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKQRFSHRTNWELSANRANIARQTLVAGGMPEQ 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           R+ +++G +   L    +P  S NRRI++ V
Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFV 274


>gi|124268058|ref|YP_001022062.1| chemotaxis signal transduction protein CheY [Methylibium
           petroleiphilum PM1]
 gi|124260833|gb|ABM95827.1| Chemotaxis signal transduction protein CheY [Methylibium
           petroleiphilum PM1]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 154 GKDLCKSTDLEKSINKE---ENYFLPPLSKEKIL-AMKRKKRLQDLAKKISSTLSGLVAD 209
           G+DL +ST   K  + E   ++Y L  L   +   A    + L+ L  ++ S L+     
Sbjct: 89  GQDLTRSTGQVKRGDVEAERKSYTLQALKATRAQQASAEAESLKMLKGRVESKLANDPRF 148

Query: 210 NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           N +K  + F+ T  G+ I I+D++N PMF   S++  P    +L+ IG VLA     +++
Sbjct: 149 NELKAQIRFDMTADGLRIQIVDEQNRPMFATGSAVVQPYMRELLRTIGGVLAEVPNKLTL 208

Query: 269 RGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHTD + F   A    NW LS DRA ++ + L+  G++++++ ++ G A   L     P
Sbjct: 209 EGHTDTAAFSAGAGGYSNWELSADRANASRRELIAGGLADEKVLRVQGLAASSLFDREQP 268

Query: 327 MNSANRRIDILVEDRQ 342
           +N  NRRI I+V +R+
Sbjct: 269 LNPVNRRISIIVMNRE 284



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          II KK+       + G+WKI YADF+T +MAFFL+MW++ +T +  +K I+ YFN
Sbjct: 11 IIVKKIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRKGIQDYFN 65


>gi|323492326|ref|ZP_08097479.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546]
 gi|323313373|gb|EGA66484.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546]
          Length = 330

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 133/329 (40%), Gaps = 66/329 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+    D  P++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + +    
Sbjct: 7   VVFKRSKKHDHEPHHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62

Query: 75  NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                S  +FD+   NP + S S + IDL+ D  +                         
Sbjct: 63  -----SSSVFDKSYGNPFDTSQSISPIDLASDSSV------------------------- 92

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +   S H  NS       G               E +  +P            ++R
Sbjct: 93  ---PSRHDSTHTVNSFFDGDGDGP--------------ETDSLIPG-------TFDTQER 128

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L  LAK I   +    A   V       T  G+ + + D     MF +  +   P    +
Sbjct: 129 LAALAKVIEEAVRQSSAQGNVN---VTVTPQGLRVVLQDDYKQHMFSRGGAELTPFFEDL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +  V       I I GHTD++ F++  +   NW LS  RA  A   L+  G+ ++R+
Sbjct: 186 LLALAPVFKRVVNPIIISGHTDSTQFKHRFKQASNWELSASRANVARVTLVSGGMPDERV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +++G +   L    DP +S NRRI++ V
Sbjct: 246 LQVTGMSDRALLNNDDPESSENRRIELFV 274


>gi|260767946|ref|ZP_05876880.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260615976|gb|EEX41161.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 330

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 135/331 (40%), Gaps = 60/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+     D P++ G+WK+  ADFM  LMA FLV+W++   + + +KAI  + 
Sbjct: 2   QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +         S  +FD      RS  N  D S     + + +DL   S+           
Sbjct: 62  H---------SASVFD------RSYGNPFDTSQ----SISPIDLASESS----------- 91

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               + +   + H   S    +  G               E +  +P            +
Sbjct: 92  ----VPSKHDANHTVTSFYNGNGNGP--------------ESDAIIPG-------NFDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK I + +  + A      V    T  G+ I + D     MF +  +   P   
Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       + I GHTD++ F  R   R NW LS +RA  A Q L+  G+ E 
Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKRRFSHRTNWELSANRANIARQTLVAGGMPEQ 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           R+ +++G +   L    +P  S NRRI++ V
Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFV 274


>gi|34498443|ref|NP_902658.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472]
 gi|34104298|gb|AAQ60657.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472]
          Length = 328

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 71/342 (20%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G KN+      +IKK    +    + G+WK+ +ADF+  LM  FLV+W++ A D +    
Sbjct: 3   GLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQEN--- 59

Query: 65  IEQYFNPFGKNLMTASKG--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           ++Q     G + +    G  I    NPP               I ++ +  + GS    K
Sbjct: 60  LQQLLTTSGGSPLLQGNGKQIDHMGNPP------------GTLIPRDPIPGQAGSQAASK 107

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
              R                  +S  R SE+ +   +S D E  + K             
Sbjct: 108 SAVR------------------DSDKRASEQPELPRRSYDSEADLRK------------- 136

Query: 183 ILAMKRKKRLQDLAKK--ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            LA +    L ++++K  +SS L  ++            T  G+ +++ D     MF++ 
Sbjct: 137 -LAAQ----LSEMSQKAGLSSNLQTVI------------TPYGLRVTLHDTDQQGMFERG 179

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAY 296
           S+I  P    +LQ+IG +L      + + GHTDA+ +       A  NW LS +RA +A 
Sbjct: 180 SAIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAAR 239

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +M+ G++ D + ++ G A         P+ + NRRI++LV
Sbjct: 240 LHMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLV 281


>gi|91223190|ref|ZP_01258456.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01]
 gi|269967120|ref|ZP_06181187.1| chemotaxis LafU protein [Vibrio alginolyticus 40B]
 gi|91192003|gb|EAS78266.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01]
 gi|269828257|gb|EEZ82524.1| chemotaxis LafU protein [Vibrio alginolyticus 40B]
          Length = 331

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 66/335 (19%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + KV   D  ++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKVYSHDESSHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 61

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D                      
Sbjct: 62  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQD---------------------- 90

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                     +S  S+H  N +     KG               E +  +P         
Sbjct: 91  ----------SSVPSKHNSNHVVSSYFKGD----------GDGPEIDSLIPG-------N 123

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + +   N    V    T  G+ I + D     MF +  +   
Sbjct: 124 FDTQEQLAALAKVIEQMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 180

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  V       + I GHTDA PF  R   + NW LS  RA  A   L++ G
Sbjct: 181 PFFEDLLLALAPVFHRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 240

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +DR+ +++G +   L    +P +S NRRI++ V
Sbjct: 241 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFV 275


>gi|304413521|ref|ZP_07394994.1| flagellar motor component [Candidatus Regiella insecticola LSR1]
 gi|304284364|gb|EFL92757.1| flagellar motor component [Candidatus Regiella insecticola LSR1]
          Length = 326

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 58/324 (17%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           IIK+         + G+WK+ +ADF   +MA F+V+WI+ A  ++ +  I  + +     
Sbjct: 12  IIKRSAKKHHAGVHTGAWKVAFADFTLAMMALFMVLWIVGAVSEEERHEIMSHIH----- 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                  IF        S+Q+ + + +     KN  D         K ++ L  N     
Sbjct: 67  ----GNTIF--------SNQSFLSIPLK---NKNGAD---------KNFEMLHTNK---- 98

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                       TRDS K +            N+ +  F  P    K +  K    +QDL
Sbjct: 99  ------------TRDSMKER---------ARENRLKEPFKEPDQIRKEVVDKSATEMQDL 137

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           ++ +   L    A N    +  E    G+ I I D +   MF  SS++  P    +L ++
Sbjct: 138 SRMV---LEISKAHNAQSNLNIEMVPQGLRILIQDDKKREMFPLSSALLTPFFTRLLAEL 194

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL      + I GHTD + +R+    +NW LS +RA +A + L + G+ +  I +I+ 
Sbjct: 195 APVLNDLNNKVIITGHTDGARYRDQELYNNWNLSGERAMAARRALERGGLDDAHILQINA 254

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A   L    DP+ +ANRRI+I+V
Sbjct: 255 MADQMLLDEKDPLGAANRRIEIMV 278


>gi|254228819|ref|ZP_04922242.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262396462|ref|YP_003288315.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|151938766|gb|EDN57601.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262340056|gb|ACY53850.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 330

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 67/335 (20%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHSHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D  +                   
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                     +   S H  +S  R    G ++              +  +P         
Sbjct: 93  ---------PSKHNSNHVVSSYFRGDGDGPEI--------------DSLIPG-------N 122

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + +   N    V    T  G+ I + D     MF +  +   
Sbjct: 123 FDTQEQLAALAKVIERMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  V       + I GHTDA PF  R   + NW LS  RA  A   L++ G
Sbjct: 180 PFFEDLLLALAPVFQRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 239

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + +DR+ +++G +   L    +P +S NRRI++ V
Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFV 274


>gi|163800113|ref|ZP_02194014.1| chemotaxis LafU protein [Vibrio sp. AND4]
 gi|159175556|gb|EDP60350.1| chemotaxis LafU protein [Vibrio sp. AND4]
          Length = 330

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 141/329 (42%), Gaps = 66/329 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+  A D   ++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + +    
Sbjct: 7   VVFKRAKAHDHDESHGGAWKVAFADFMIALMALFLVLWVMQVVDKEDRKAIVAHLH---- 62

Query: 75  NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                S  +FD+   NP + S S + IDL+ D  +                         
Sbjct: 63  -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +   S H  +S  +    G ++              +  +P            +++
Sbjct: 93  ---PSQHNSNHVVSSFFQGDGDGPEM--------------DSLIPG-------NFDTQEQ 128

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L  LAK I   +  + A + V   +   T  G+ I + D     MF++  +   P    +
Sbjct: 129 LALLAKVIDKVVGQISAQDNVNVTI---TPQGLRIVLQDDYMQHMFNRGGAELTPFFEDL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +  V       + I GHTD++PF+  + R  NW LS  RA  A   L++ G+ +DR+
Sbjct: 186 LLALAPVFERINNPLIISGHTDSTPFKQRVGRKSNWALSASRADVARNTLVEGGMPDDRV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +++G +   L    +P +S NRRI++ +
Sbjct: 246 MQVTGMSDRALLNREEPDSSENRRIELFI 274


>gi|332531608|ref|ZP_08407505.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
 gi|332038971|gb|EGI75400.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
          Length = 318

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           A +  +RL  L+ KIS+ +S         + +  E+T  G+ I I+D++  PMF   ++ 
Sbjct: 115 ARRDAQRLAALSAKISAAISNNAQLRRFSRQIQLESTPDGLKIQIVDEQGRPMFTTGNAA 174

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMK 301
             P    +L++IG  L      IS+ GHTD + + N  R   NW LS DRA +A + L+ 
Sbjct: 175 VQPYMRDILREIGAALNGVENKISLDGHTDVTQYGNQGRSYSNWELSADRANAARRELVA 234

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV-----EDRQ 342
           +G+ ED++ +++G A   L +  +P   ANRRI I+V     E+RQ
Sbjct: 235 AGMPEDKLLRVTGLAASNLLVPDNPTAPANRRISIMVLTKEAEERQ 280



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++ +T     K +  YF
Sbjct: 27 AWKIAYADFVTAMMAFFLLMWLLGSTSKGDLKGLADYF 64


>gi|308050006|ref|YP_003913572.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632196|gb|ADN76498.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 328

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 46/309 (14%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WK+ +ADF   +MA FLV+W++   D   + +I Q     G+ L+ +S G   + N P
Sbjct: 23  GAWKVAFADFTLAMMALFLVLWLVQVADKQERASIVQALT--GETLLESSSGGSWDSNRP 80

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                    L +D  ++     +    T  ++    + N I                   
Sbjct: 81  H-------ILELDGTLSMTEAVMPATGTGVQRAGPAMVNQI-----------------PK 116

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVAD 209
            E+G    +   L           LP         ++ + +L+ LA++    ++   +AD
Sbjct: 117 GERGASAGQGDTL--------TSLLPG-------PVETQAQLEVLAREAGKIIAQSEIAD 161

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N+      +    G+ I I D     MF + SS   P    +L  +  +L      + + 
Sbjct: 162 NVA----IQVVPQGLKILIRDNLQQFMFARGSSRMTPYFEDLLFSLAPLLKQVQNPLMVS 217

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTD++ FR+    NW LS +RA  A + L   GV  ++   + G A       SDP +S
Sbjct: 218 GHTDSTHFRSNDSSNWELSSERALEARRALEFGGVGRNQFFNVVGMADQVPVEPSDPRSS 277

Query: 330 ANRRIDILV 338
           ANRRI+++V
Sbjct: 278 ANRRIELMV 286


>gi|254706492|ref|ZP_05168320.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 284

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++   
Sbjct: 165 GVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATY 224

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           DN RLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRIDI ++ +
Sbjct: 225 DNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 283


>gi|254497974|ref|ZP_05110737.1| flagellar motor protein MotB [Legionella drancourtii LLAP12]
 gi|254352751|gb|EET11523.1| flagellar motor protein MotB [Legionella drancourtii LLAP12]
          Length = 293

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L++L  +I+ ++    + N +K  +L E    G+ I +ID +  PMFD  S    P+ 
Sbjct: 130 QKLEELKSEINLSIQNDPSLNGLKDRMLMEVVHDGLRIQLIDNQKNPMFDVGSEKLNPQF 189

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVS 305
             +  KI ++L      ++I+G+TDA P+ N   +   NW LS  RA +A + L+K+G+ 
Sbjct: 190 EPIFTKISKLLNGVPNKVTIQGYTDAHPYHNPDELEYTNWELSTQRANAARRALIKAGLD 249

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E+++ K+SGF+        DP N+ NRRI I+V
Sbjct: 250 ENKVMKVSGFSSTMPLDKKDPFNAINRRISIIV 282



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M+ + +  +E  Q IIIKK V      ++ GSWKI YADF+T +MAFFL+MW+I + +  
Sbjct: 1  MSENENSAKEKSQPIIIKK-VKKHGHAHHGGSWKIAYADFVTAMMAFFLLMWLIASLNKA 59

Query: 61 TKKAIEQYF 69
           ++ I +YF
Sbjct: 60 QREGIAEYF 68


>gi|261313945|ref|ZP_05953142.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
 gi|261302971|gb|EEY06468.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 283

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++   
Sbjct: 164 GVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATY 223

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           DN RLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRIDI ++ +
Sbjct: 224 DNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 282


>gi|83593178|ref|YP_426930.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83576092|gb|ABC22643.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 360

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 7/168 (4%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQRNTP 235
           +K LA   +KR Q+   K ++ L   +        +   +L + T  G+ I +ID+    
Sbjct: 151 DKQLAAAEEKRQQEEFNKTATELRQAIQAVPSLQALSNSLLIDNTPEGLRIQLIDREGLS 210

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           MF   SS  LP T  +L  + + +A     ISI GHTDA P+ + +   NW LS DRA +
Sbjct: 211 MFPTGSSALLPHTRDLLALVAKAVADVPNKISISGHTDAPPYSDPSGYGNWELSADRALA 270

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI-LVEDR 341
           + +VL+ +G+ EDR+ ++ G A     +A DP   +NRRI I L+ DR
Sbjct: 271 SRRVLLANGLKEDRVDRVVGKAETEPLLADDPKAPSNRRIAITLLRDR 318



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          DQ IIIK+ +      ++ G+WK+ YADF+T +MAFFL++W++N+  ++    I  YF P
Sbjct: 3  DQPIIIKR-IKKGGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYFAP 61


>gi|74317262|ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC
           25259]
 gi|74056757|gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 319

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D++N PMF+ +S+   P T V+L +I +VL      IS+ GHTDA
Sbjct: 149 LLIDITSEGLRIQIVDEQNRPMFNLASAELQPYTKVILHEIAQVLNDVENRISLSGHTDA 208

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ N  R   NW LS DRA ++ + L+  G+SE ++ ++ G A       + P +  NR
Sbjct: 209 RPYANGERGYSNWELSADRANASRRELIVGGMSEAKMLRVVGLASSVPFTQAKPFDPVNR 268

Query: 333 RIDILV 338
           RI I+V
Sbjct: 269 RISIIV 274



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +YF
Sbjct: 8  IIVKRIKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYF 61


>gi|257094100|ref|YP_003167741.1| flagellar motor protein MotB [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046624|gb|ACV35812.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 319

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D++N PMFD SS+   P T V+L++IG+ L      +S+ GHTDA
Sbjct: 153 LLIDITSEGLRIQIVDEQNRPMFDTSSAELKPHTRVILREIGKALNAVHNKLSLSGHTDA 212

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           + +    +   NW LS +RA ++ + L+  G+ E ++ ++ G A   L   +DP++S NR
Sbjct: 213 AQYGGGDKGFSNWELSANRANASRRELIAGGMDEHKVLRVVGLASTVLFDKNDPLSSINR 272

Query: 333 RIDILVEDRQ 342
           RI I+V +++
Sbjct: 273 RISIVVLNKR 282



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 15 IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
          I+IK  KKVA     ++ G+WKI YADF+T +MAFFL+MW++ +T     K I  +F NP
Sbjct: 7  IVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTASGDLKGIADFFQNP 63

Query: 72 F 72
           
Sbjct: 64 L 64


>gi|54307286|ref|YP_128306.1| chemotaxis LafU protein [Photobacterium profundum SS9]
 gi|46911706|emb|CAG18504.1| Hypothetical chemotaxis LafU protein [Photobacterium profundum SS9]
          Length = 330

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 137/330 (41%), Gaps = 55/330 (16%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
             II+KK+       ++ G+WK+ +ADF   +MAFF+V+W++  T  + +  IEQ     
Sbjct: 6   HIIIVKKRARRHHDEHHGGAWKVAFADFAIAMMAFFMVLWLMGITTQEERIEIEQ----- 60

Query: 73  GKNLMTAS--KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              L TAS    IF+  N P     + ID   +    +N ++    STN K++       
Sbjct: 61  --RLQTASIFDNIFEITNSP-----HPIDFDGNASPFENPIN---SSTNSKRKRD----- 105

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR-- 188
                          S+ + + +G D   +    K +N              +LA K   
Sbjct: 106 --------------TSVAQQTPQGDDKASAGRGPK-LNS-------------MLAGKHLS 137

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             +L  LAK +      L A N    ++ E    G+ I I D  +  MF +      P  
Sbjct: 138 TAQLTILAKGLKEMAEALSASN---NIVLEIVPQGLRILIQDDDDHFMFQRGGIEMTPFF 194

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L  +  VL      + I GHTD+ PF      NW LS  RA  A QVL+ SG+    
Sbjct: 195 EDMLYNLAPVLGQIKNRMVISGHTDSIPFHRRDYSNWDLSGSRALKARQVLVDSGLPVAN 254

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           I +++  A         P +  NRRI+++V
Sbjct: 255 ILQVAAMAARMPVNKQYPKSGKNRRIEMMV 284


>gi|156976178|ref|YP_001447084.1| flagellar motor protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527772|gb|ABU72857.1| hypothetical protein VIBHAR_04949 [Vibrio harveyi ATCC BAA-1116]
          Length = 330

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 66/329 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + +    
Sbjct: 7   VVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62

Query: 75  NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                S  +FD+   NP + S S + IDL+ D  +                         
Sbjct: 63  -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +   S H  +S  +    G ++              +  +P            +++
Sbjct: 93  ---PSKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NFDTQEQ 128

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L  LAK I   +  + A   V   +   T  G+ I + D     MF +  +   P    +
Sbjct: 129 LALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTPFFEDL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+ +DR+
Sbjct: 186 LLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGMPDDRV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +++G +   L    +P +S NRRI++ +
Sbjct: 246 MQVTGMSDRALLNPEEPDSSENRRIELFI 274


>gi|269960142|ref|ZP_06174518.1| chemotaxis LafU protein [Vibrio harveyi 1DA3]
 gi|269835113|gb|EEZ89196.1| chemotaxis LafU protein [Vibrio harveyi 1DA3]
          Length = 330

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 66/334 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++              +  +P          
Sbjct: 94  ---------SKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I   +  + A   V   +   T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +DR+ +++G +   L    +P +S NRRI++ +
Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFI 274


>gi|153831776|ref|ZP_01984443.1| lateral flagellar motor protein B [Vibrio harveyi HY01]
 gi|148872286|gb|EDL71103.1| lateral flagellar motor protein B [Vibrio harveyi HY01]
          Length = 330

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 66/329 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + +    
Sbjct: 7   VVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62

Query: 75  NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                S  +FD+   NP + S S + IDL+ D  +                         
Sbjct: 63  -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +   S H  +S  +    G ++              +  +P            +++
Sbjct: 93  ---PSKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NFDTQEQ 128

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L  LAK I   +  + A   V   +   T  G+ I + D     MF +  +   P    +
Sbjct: 129 LALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTPFFEDL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+ +DR+
Sbjct: 186 LLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGMPDDRV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +++G +   L    +P +S NRRI++ +
Sbjct: 246 MQVTGMSDRALLNPEEPDSSENRRIELFI 274


>gi|332162880|ref|YP_004299457.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604276|emb|CBY25774.1| flagellar motor rotation protein MotB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667110|gb|ADZ43754.1| Flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863328|emb|CBX73451.1| putative protein mbhA [Yersinia enterocolitica W22703]
          Length = 272

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 73/310 (23%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-----P 89
           + +ADF   +MA F+V+WI+    ++ ++ I    N          K IF +Q+      
Sbjct: 1   MAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPS 51

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
             +S   K   S+D H                                +Q++  K++L  
Sbjct: 52  KSKSGGGKFSDSVDGH--------------------------------EQAKETKSNLA- 78

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                    +  + E+S+ +              L  +  + +++L + I+   S   A 
Sbjct: 79  --------VEVPEPEQSLEE--------------LVDRSGREMEELTRIITQITSAYDAQ 116

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           + +K    E    G+ I I D ++  MF +SS++  P    +L ++          I I 
Sbjct: 117 SNLK---MEVVPQGLRILIQDDKHRDMFQRSSAVLTPFFSRLLAELAPAFNEMDNKIIIT 173

Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDAS +R+ +  +NW LS +RA  A++ L+K G+ +DR+ +I+  A   L  +++P+ 
Sbjct: 174 GHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLDDDRVLQINAMAEQMLLDSAEPLA 233

Query: 329 SANRRIDILV 338
           + NRRI+I+V
Sbjct: 234 AKNRRIEIMV 243


>gi|330501613|ref|YP_004378482.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01]
 gi|328915900|gb|AEB56731.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01]
          Length = 334

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMF   S+   P    +L  + + +      ISI GHTDA
Sbjct: 147 ILFEITQDGLRIQIMDAENRPMFALGSAELQPYFEDILLAMADTIRAVPNKISISGHTDA 206

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            PF       NW LS +RA +A + L+  G  +++++++ G+A   L   +DP N  NRR
Sbjct: 207 KPFAGRGDFGNWELSSNRANAARRTLVAGGYPDEQVARVVGYASSALFDRADPFNPVNRR 266

Query: 334 IDILV 338
           IDI+V
Sbjct: 267 IDIVV 271



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 6/67 (8%)

Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          EN+Q II+K  KK A     ++ G+WKI +ADF T +MAFFLVMW++++   + K+AI  
Sbjct: 2  ENNQPIIVKRVKKTAGG---HHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKRAISG 58

Query: 68 YF-NPFG 73
          YF +P G
Sbjct: 59 YFQDPIG 65


>gi|187478167|ref|YP_786191.1| flagellar motor protein MotB [Bordetella avium 197N]
 gi|115422753|emb|CAJ49281.1| chemotaxis protein [Bordetella avium 197N]
          Length = 324

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 3/153 (1%)

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           + RL+ L +++ + + +  V  N    +L + T  G+ I I+D +N PMF   S+   P 
Sbjct: 116 RHRLESLKRRLEAVIDNSPVLKNFRPQLLIDLTTEGLRIQIVDSQNRPMFATGSAQVQPY 175

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L+++G VL      +SI GHTDA+ +  R  A  NW LS DRA ++ Q L+  G++
Sbjct: 176 MRDILRELGPVLNDLPNKVSISGHTDATQYARRERAYSNWELSTDRANASRQELVAGGMT 235

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E ++ +I G A     +  DP  + NRRI ++V
Sbjct: 236 EGKVMRIQGLASSMSIVKDDPYAAVNRRISLVV 268



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          N+  +++++K +     ++ GSWKI YADF+T +MAFFLVMW+++    +  K I  YF
Sbjct: 5  NNHRVVVRRKRS-SAKAHHGGSWKIAYADFITAMMAFFLVMWLVSIVPREELKGIADYF 62


>gi|241763663|ref|ZP_04761713.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241367138|gb|EER61504.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 310

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L++IG  L      IS+ GHTDA
Sbjct: 151 IRIDVTPDGLQIQIVDNQNRPMFDSGSALVKPYMRDILREIGAALGGVENRISLAGHTDA 210

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  R   NW LS DRA ++ + L+ +G+ + ++ ++ G A   L    +P   ANR
Sbjct: 211 APYGNSDRGYSNWELSADRANASRRELVSAGMPDAKLGRVVGLAASDLLEPDNPRAPANR 270

Query: 333 RIDILVEDRQ 342
           RI I V  R+
Sbjct: 271 RITITVLTRE 280



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
          II K++       + G+WKI YADF+T +MAFFL+MW++ +T     + I  YFN   K 
Sbjct: 9  IIIKRIKKSGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFNSPLKV 68

Query: 76 LMTASKG 82
           M    G
Sbjct: 69 AMVGGDG 75


>gi|226941125|ref|YP_002796199.1| flagellar motor protein MotB [Laribacter hongkongensis HLHK9]
 gi|226716052|gb|ACO75190.1| MotB [Laribacter hongkongensis HLHK9]
          Length = 293

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E T  G+ + I+D++N PMFD  S+  LP T  +L ++G++       +S+ GHTDA
Sbjct: 137 LLLEMTPEGLKVQIVDEKNRPMFDSGSANLLPHTKDILHELGKMFNDVPNRLSVSGHTDA 196

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+    R   NW LS DRA +A + L+  G+ + +I ++ G          + +N  NR
Sbjct: 197 TPYAGGERGYSNWDLSADRANAARRELLAGGMQDQKILRVVGLGSANPLDKQNAVNPINR 256

Query: 333 RIDILVEDRQ 342
           RI I+V ++Q
Sbjct: 257 RIAIVVLNKQ 266



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q  II K++      ++ G+WKI YADF+T +MAFFL+MW++++    T   I +YF   
Sbjct: 6   QRPIIVKRIKKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVSQGTLAGISEYFKTP 65

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            K  ++   G  D  +  +   Q+         +T+++  +K    N+++Q +R
Sbjct: 66  LKVALSGGDGSGDATSAIKGGGQD---------LTRSAGQVKRTYMNEERQRER 110


>gi|206890444|ref|YP_002248653.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742382|gb|ACI21439.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 252

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           R KR ++  KK        + D+I    + +T   G+ I I+D    PMF  SS+ P  +
Sbjct: 98  RAKRFEEQFKKTIEEKLKELKDHI----MIDTVEGGVRIQIVDLEGEPMFPLSSAEPTEK 153

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              +L+ + E +      +++ GHTDA PFR     NW LS  RA SA + + + GV+ +
Sbjct: 154 AREILKVVAENIKDEPARVAVEGHTDAVPFRGGKTTNWELSTARASSARREIERYGVAPE 213

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV---EDRQG 343
           +I+++ G+A     I  DP +  NRRI I++   +++QG
Sbjct: 214 KIARVVGYADTLPLIKDDPKDPRNRRISIILMFEKEKQG 252



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--- 72
          II KK+      ++ GSWK+ YADF T +MAFFL++W+++  D   + AI  YF  F   
Sbjct: 9  IIVKKIKKGHEAHHGGSWKVAYADFTTAMMAFFLLLWLLSMLDPVKRAAIADYFRYFNLL 68

Query: 73 --GKNLMTASKGIFDE 86
            G++ M  S  I  E
Sbjct: 69 ESGQSFMQQSSAIQQE 84


>gi|262173363|ref|ZP_06041040.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
 gi|261890721|gb|EEY36708.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
          Length = 315

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 66/313 (21%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88
           G+WKI  ADFM  LMA FLV+W++   + D +KAI  + N         S  +FDE   N
Sbjct: 23  GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73

Query: 89  PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           P + S S + IDL+ D  +                             +   S H  +S 
Sbjct: 74  PFDTSNSISPIDLASDSSV----------------------------PSRHNSNHVVSSF 105

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            +    G +   ++ ++ +   +E   L                L  + KK+   +S   
Sbjct: 106 FQGDGDGPE--SNSLIDGNFETQEQLTL----------------LAKVVKKVIGQVSAQG 147

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
             N+        T  G+ I + D     MF +  S   P    +L  +  V       I 
Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201

Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I GHTD+ PFR  I++  NW LS  RA  A + L+  G+  +R+ +++G +   L   + 
Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAERVLQVTGMSDRALLNQTA 261

Query: 326 PMNSANRRIDILV 338
           P +S NRRI++ V
Sbjct: 262 PDSSENRRIELFV 274


>gi|258624680|ref|ZP_05719615.1| chemotaxis LafU protein [Vibrio mimicus VM603]
 gi|258583072|gb|EEW07886.1| chemotaxis LafU protein [Vibrio mimicus VM603]
          Length = 315

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 66/313 (21%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88
           G+WKI  ADFM  LMA FLV+W++   + D +KAI  + N         S  +FDE   N
Sbjct: 23  GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73

Query: 89  PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           P + S S + IDL+ D  +                             +   S H  +S 
Sbjct: 74  PFDTSNSISPIDLASDSSV----------------------------PSRHNSNHVVSSF 105

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            +    G +   ++ ++ +   +E   L                L  + KK+   +S   
Sbjct: 106 FQGDGDGPE--SNSLIDGNFETQEQLTL----------------LAKVVKKVIGQVSAQG 147

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
             N+        T  G+ I + D     MF +  S   P    +L  +  V       I 
Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201

Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I GHTD+ PFR  I++  NW LS  RA  A + L+  G+  +R+ +++G +   L   + 
Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKALVDGGMPAERVLQVTGMSDRALLNQTA 261

Query: 326 PMNSANRRIDILV 338
           P +S NRRI++ V
Sbjct: 262 PDSSENRRIELFV 274


>gi|258622497|ref|ZP_05717519.1| chemotaxis LafU protein [Vibrio mimicus VM573]
 gi|258585197|gb|EEW09924.1| chemotaxis LafU protein [Vibrio mimicus VM573]
          Length = 315

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 126/313 (40%), Gaps = 66/313 (21%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88
           G+WKI  ADFM  LMA FLV+W++   + D +KAI  + N         S  +FDE   N
Sbjct: 23  GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73

Query: 89  PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           P + S S + IDL+ D  +                                 S H  N +
Sbjct: 74  PFDTSNSISPIDLASDSSVP--------------------------------SRHNSNHV 101

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                +G      +D     N E    L  L+K              + KK+   +S   
Sbjct: 102 VSSFFQGDGDGPESDSLIDGNFETQEQLTLLAK--------------VVKKVIGQVSAQG 147

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
             N+        T  G+ I + D     MF +  S   P    +L  +  V       I 
Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201

Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I GHTD+ PFR  I++  NW LS  RA  A + L+  G+  +R+ +++G +   L   + 
Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAERVLQVTGMSDRALLNQTA 261

Query: 326 PMNSANRRIDILV 338
           P +S NRRI++ V
Sbjct: 262 PDSSENRRIELFV 274


>gi|283834436|ref|ZP_06354177.1| MbhA protein [Citrobacter youngae ATCC 29220]
 gi|291069983|gb|EFE08092.1| MbhA protein [Citrobacter youngae ATCC 29220]
          Length = 332

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 150/325 (46%), Gaps = 56/325 (17%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+     +           +N
Sbjct: 16  IIRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKADR-----------EN 64

Query: 76  LMTASKG--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           ++ A  G  IF   N    +  NK+                I    QKK   R  N +  
Sbjct: 65  IVAALHGQSIF---NGGGMAPLNKLGKQ------------PIAPGAQKKNVTR--NKLDK 107

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             N Q++         +++K  D+ + T L K  + +E   L  L+ + I  + RK  ++
Sbjct: 108 TVNPQETARITEE---NAKKALDVNEKTALLKQKSAQE---LGELATD-INVIARKAHME 160

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                     + L  + + +G+        +LI     RN  MF++ S+  +P    +L 
Sbjct: 161 ----------TNLEMEIVPQGLR-------VLIKDDQNRN--MFERGSAKIMPFFKSLLV 201

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           ++  V       I I GHTDA  +++   +NW LS DRA SA +VL  +G+ +D++ ++S
Sbjct: 202 ELAPVFDSLDNKIIITGHTDAMSYKSNIYNNWNLSGDRALSARRVLEDAGMPQDKVMQVS 261

Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338
             A   L  A +P ++ NRRI+I+V
Sbjct: 262 AMADQMLLDAKNPESAGNRRIEIMV 286


>gi|322433005|ref|YP_004210254.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165232|gb|ADW70936.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 309

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K +    T  G+ I +++      F+  SS P P    +L+ + E L      ISI GHT
Sbjct: 112 KQIEMTVTEEGLRIELVEDAKGTFFETGSSKPTPALEEILKVLSEQLKSLPNSISIEGHT 171

Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           DA P+       NW LS DRA  A + + ++G+  D++S++ GFA  RL +   P++++N
Sbjct: 172 DAQPYATATVYGNWELSTDRANVARREMQENGIRTDQVSQVRGFADQRLHVPEKPLDASN 231

Query: 332 RRIDILVED 340
           RRI ++V++
Sbjct: 232 RRISLVVQN 240



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKG 82
          WK+ YADF+T +M+ F+V+W++++T   T++ I  YFN P G +    ++G
Sbjct: 25 WKVAYADFVTAMMSLFIVLWLMSSTSKQTQEEIAGYFNDPKGTSTKHGTEG 75


>gi|121997035|ref|YP_001001822.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121588440|gb|ABM61020.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 346

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E T  G+ I ++D    PMF+  S+ P   T  +L+ +  VL      +S+ GHTDA
Sbjct: 130 ILLEITDDGLRIQLVDHDGRPMFELGSADPREHTEEILRALARVLEDVPNPVSLSGHTDA 189

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            PF     DNW LS DRA +A   L+  G+  +RI ++ G+A        DP    NRRI
Sbjct: 190 RPFARDDYDNWSLSTDRANAARLTLLDGGLPAERIGQVVGYADTVPFDPDDPRADINRRI 249

Query: 335 DILVEDRQG 343
            +++  R+ 
Sbjct: 250 SVVLLSREA 258



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +EN    ++ KKVA     ++ GSWKI +ADFMT + A FLV+W++ A DDD ++ I QY
Sbjct: 3   EENKTRPVVIKKVAKHGDDHHGGSWKIAFADFMTAMFAIFLVLWLLLALDDDQRQGIGQY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           F         AS+ I D +   ER +   IDLS
Sbjct: 63  FRDPQAAHPPASRDIIDFEG--ERRA--PIDLS 91


>gi|319764525|ref|YP_004128462.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|317119086|gb|ADV01575.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L++IG  L      IS+ GHTDA
Sbjct: 150 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGSVENRISLAGHTDA 209

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  R   NW LS DRA ++ + L+ +G+ + R+ ++ G A   L    +P    NR
Sbjct: 210 APYGNGDRGYSNWELSADRANASRRELVAAGMPDARLGRVVGLAASDLLEPDNPRAPVNR 269

Query: 333 RIDILV 338
           RI I V
Sbjct: 270 RITITV 275



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K++       + G+WKI YADF+T +MAFFL+MW++ +T     + I  YF
Sbjct: 9  IIIKRIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62


>gi|330826741|ref|YP_004390044.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329312113|gb|AEB86528.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 311

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L++IG  L      IS+ GHTDA
Sbjct: 150 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGSVENRISLAGHTDA 209

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  R   NW LS DRA ++ + L+ +G+ + R+ ++ G A   L    +P    NR
Sbjct: 210 APYGNGDRGYSNWELSADRANASRRELVAAGMPDARLGRVVGLAASDLLEPDNPRAPVNR 269

Query: 333 RIDILV 338
           RI I V
Sbjct: 270 RITITV 275



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K++       + G+WKI YADF+T +MAFFL+MW++ +T     + I  YF
Sbjct: 9  IIIKRIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62


>gi|226225701|ref|YP_002759807.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27]
 gi|226088892|dbj|BAH37337.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27]
          Length = 289

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 2/123 (1%)

Query: 218 ETTRTGILISIID-QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
           + T+ G+ I +++ +R    F   SS     T++ LQ IG+ L+   + + I GHTDA+P
Sbjct: 132 QVTQEGLRIELVESERGDVYFPIGSSQMNSATVLTLQLIGQELSPIAQSLIIEGHTDAAP 191

Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           F R+ +  NW LS DRA +A +VL  +G+   RIS++ G+A  + ++ +DP   ANRRI 
Sbjct: 192 FGRDASYTNWELSADRANAARRVLQAAGIDPKRISEVRGYADTKPRVINDPKAPANRRIS 251

Query: 336 ILV 338
           +L+
Sbjct: 252 VLI 254



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
          SWK+ YADF+T +MAFF+VMWI+   DD TK+AIE YF NP G
Sbjct: 26 SWKVAYADFVTAMMAFFMVMWILG-MDDKTKQAIEGYFANPVG 67


>gi|326795804|ref|YP_004313624.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326546568|gb|ADZ91788.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 300

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 5/125 (4%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E T  G+ I+++D    PMF++ S+  +P++  VL  IG +LA     ISI GHTD+SP
Sbjct: 144 IEITPQGVRITLLDDPTKPMFERGSARLMPDSENVLLGIGSILARLKNPISISGHTDSSP 203

Query: 277 F---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +   R I  DNW LS  RA SA +++ + GVS+ R++++ G A        DP ++ NRR
Sbjct: 204 YVDEREI--DNWDLSSARANSARKIIEEGGVSDKRMAQVIGLADSIPYNRFDPTSAENRR 261

Query: 334 IDILV 338
           I I +
Sbjct: 262 ISITL 266



 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89
           G+WKI  ADF   +MAFFLV+WIIN        AIE YFN P G +    S    D    
Sbjct: 22  GAWKIALADFALAMMAFFLVLWIINVASPQELAAIEGYFNDPLGPSTAGYSANPIDLGGS 81

Query: 90  PERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQRL 127
           P +S++ K+DL + E  +   V  + K G  N  K+ +R+
Sbjct: 82  PAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDGKEIERM 121


>gi|119385422|ref|YP_916478.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222]
 gi|119375189|gb|ABL70782.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222]
          Length = 266

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 69/324 (21%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIKK     D  ++ G+WK+ YADF+T +MAFFL+MW++NAT +  ++ +  YFNP   
Sbjct: 10  IIIKKVQGGGDAGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRQGLADYFNP--- 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L+ +                           T++  D   G      + Q  E N    
Sbjct: 67  TLIQS---------------------------TRSGHDGPFGG-----EVQDAETN---- 90

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            + + +   ++SL   ++ G+D     D+ + I  +       L+     ++++   L+ 
Sbjct: 91  -SGKGAGASRDSLAARTQDGRD-TGFEDMARHIQDQ-------LTGSGAESLQKVNLLRH 141

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +  +++            +G++ E T         D  + P+F   S+ P P    +   
Sbjct: 142 VVTRMTD-----------EGLVIELT---------DLMDEPLFVGDSAQPTPAMKELAGI 181

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  VL      I++ GH  A P   I    W LS  RA++   +L  +G    RI +++ 
Sbjct: 182 LSGVLGRVRNEIALTGHVRAYPEMLIQSPVWALSDARAHALRNLLEGAGFDTTRIQRVTA 241

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
           FA  R + + +PM+  N RI++++
Sbjct: 242 FADRRNR-SVNPMDPDNNRIEVIL 264


>gi|89067516|ref|ZP_01155029.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516]
 gi|89047085|gb|EAR53139.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516]
          Length = 270

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 136/324 (41%), Gaps = 67/324 (20%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           IIIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +            
Sbjct: 9   IIIKRKKITGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQR------------ 56

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
                 KGI D  +P                       + I   +         +NIF  
Sbjct: 57  ------KGIADYFSP----------------------TIPINRISGGGDGAFGGDNIF-- 86

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                     N+L   ++ G +   + D       EE          ++ A+++ +  Q 
Sbjct: 87  --------TDNTL---AQSGTNPGATGDAVPGATAEE--------AAQVAALEQIEE-QL 126

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L +   S    ++AD  ++ ++ + T  G++I I D    P+F   ++ P P T+ +   
Sbjct: 127 LGRGGES----MIADEALQHIVTKLTDEGLVIEIFDLDGAPLFAPGTAEPEPVTVELAAV 182

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              VLA     +++ GH  A P        W LS  RA    ++L  SG + +RI +++G
Sbjct: 183 FARVLALVDNDVALAGHVRARPVVVADSRVWPLSTSRATRFRELLEASGQAPERIVRVTG 242

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            A  R     + ++  N R++++V
Sbjct: 243 HA-DRAPAVRNAVSLRNNRLEVVV 265


>gi|134094523|ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans]
 gi|133738426|emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas
           arsenicoxydans]
          Length = 327

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL+ L ++I   +  + +    K  +L + T  G+ I I+D++N PMF  S +   P T 
Sbjct: 125 RLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQPYTK 184

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307
           ++L +I + L      IS+ GHTDA+P+ +  +   NW LS DRA ++ + L+  G+ E 
Sbjct: 185 LILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMEEA 244

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++ ++ G +   L    DP+N  NRRI I+V +++
Sbjct: 245 KMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKK 279



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
          II K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  YF+   K 
Sbjct: 9  IIVKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQGIADYFSTPLKV 68

Query: 76 LMTASKGIFD 85
           M    G  D
Sbjct: 69 AMAGGSGSGD 78


>gi|326319083|ref|YP_004236755.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375919|gb|ADX48188.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 312

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L++IG  L      IS+ GHTDA
Sbjct: 151 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGGVENRISLAGHTDA 210

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  R   NW LS DRA ++ + L+ +G+ + ++ ++ G A   L    +P    NR
Sbjct: 211 APYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGLAASDLLEPENPRAPVNR 270

Query: 333 RIDILV 338
           RI I V
Sbjct: 271 RITITV 276



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K+V       + G+WKI YADF+T +MAFFL+MW++ +T     + I  YF
Sbjct: 9  IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62


>gi|83717140|ref|YP_438356.1| chemotaxis lafU protein [Burkholderia thailandensis E264]
 gi|167614802|ref|ZP_02383437.1| Chemotaxis lafU protein [Burkholderia thailandensis Bt4]
 gi|257141387|ref|ZP_05589649.1| chemotaxis lafU protein [Burkholderia thailandensis E264]
 gi|83650965|gb|ABC35029.1| Chemotaxis lafU protein [Burkholderia thailandensis E264]
          Length = 311

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 76/310 (24%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WK+ +ADF   LMA F+V+W++N T +  +K +       G+       GIF+     
Sbjct: 27  GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                             QR    +    ++QQ E  K      
Sbjct: 80  ----------------------------------QRSRKPVVAPFDAQQPERVKRR---- 101

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                        E++I+         L + + LA     R+ D A ++   + G VA  
Sbjct: 102 -------TPGAARERTIDS--------LQQRRALA----ARIMDEASRLG--MDGNVATA 140

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           I           G+ I+I D     MF++ S    P+ + +L  +  VL   T  + I G
Sbjct: 141 I--------NDDGVRITIHDSDKQGMFERRSDALNPQFVRLLTALVPVLGTVTNKMVIVG 192

Query: 271 HTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTDA+ + +  +  +NW LS  RA  A Q+L   G+   R+ +ISG       +  +P +
Sbjct: 193 HTDATQYADTSVFSNNWNLSSRRALRARQILADGGMDVQRMFQISGMGDSVPAVPDNPNH 252

Query: 329 SANRRIDILV 338
             NRR+++L+
Sbjct: 253 DMNRRVELLL 262


>gi|302877353|ref|YP_003845917.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302580142|gb|ADL54153.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 295

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 2/127 (1%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I IID +N PMF+  S+I  P T+ +L+ IG  L      I + GHTDA+ +
Sbjct: 159 DLTSEGLRIMIIDAKNRPMFEIGSAILQPYTVEILRSIGSTLNRVPNKIGLSGHTDAANY 218

Query: 278 R--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  +    NW LS DRA ++ + L+  G+ +++I ++ G +   L   +DP ++ NRRI 
Sbjct: 219 QGGSAGYSNWDLSADRANASRRTLIAGGMGQEKILRVVGLSDSVLFNPADPYDAHNRRIS 278

Query: 336 ILVEDRQ 342
           I+V +++
Sbjct: 279 IIVMNQK 285



 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 33/39 (84%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          G+WKI YADF+T LMAFFL++W+I++T  D ++AI +YF
Sbjct: 29 GAWKIAYADFVTALMAFFLMLWLISSTSADYRQAISEYF 67


>gi|297538877|ref|YP_003674646.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297258224|gb|ADI30069.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 311

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ + I+D++N  MF+ S +   P    +LQ++G+ L      IS+ GHTDA
Sbjct: 152 LLLDITSDGLRVQIVDEQNRAMFNSSKAEMQPYAKQILQELGKTLNDVPNKISLSGHTDA 211

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  +   NW LS DRA ++ + L+  G+ E ++ ++ G +   L    +P ++ NR
Sbjct: 212 TPYPNGEKSYSNWELSSDRANASRRELVAGGMDETKLLRVVGLSSASLFNKENPFDATNR 271

Query: 333 RIDILVEDRQ 342
           RI I++ ++Q
Sbjct: 272 RISIIIMNKQ 281



 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +WKI YADF+T +MAFFL+MW++ +T  + K  I  YFN
Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSTSKEQKAGISDYFN 63


>gi|121611336|ref|YP_999143.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555976|gb|ABM60125.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 327

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+ I IID++N PMFD  S+  LP    +L  IG  L      IS+ GHTDA P+  
Sbjct: 160 TPDGLQIQIIDEQNRPMFDSGSARVLPHMRDILHAIGAALGGVKNRISLAGHTDAVPYGK 219

Query: 280 IAR------DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                     NW LS DRA ++ + L+ +G+ +D++ ++ G A        DP+  ANRR
Sbjct: 220 YGPHDEPGYSNWELSADRANASRRELVSAGMPDDQLGRVVGLAASDPLAPDDPLAPANRR 279

Query: 334 IDILV 338
           I I V
Sbjct: 280 ISITV 284



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74
          II ++V       ++G+WKI YADF+T +MAFFL++W++ +T     + I  YF  P G 
Sbjct: 16 IIVRRVHRAAPAGHMGTWKIAYADFVTAMMAFFLLLWLLGSTAKGDLQEIAAYFAAPLGA 75

Query: 75 NLM 77
          +++
Sbjct: 76 SMV 78


>gi|23010955|ref|ZP_00051470.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 464

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 11/189 (5%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K  D+  +   E   +KE    +P    +            ++AK + S   G  A  + 
Sbjct: 279 KAADIKPAPKAEAPPSKEPAAAIPAEGAKSAETAALAALKDEIAKAVPSLPMGAPAPRV- 337

Query: 213 KGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
                E  RTG  +LISI D+ N  MF   S+ P P+ +  L++I ++L      + +RG
Sbjct: 338 -----EVRRTGEGVLISITDEINFSMFGIGSAEPTPKVVKALERIAKILNTRPGRVVVRG 392

Query: 271 HTDASPFRNIARDNWRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HTDA PFR+   DNWRLS   R +        +  S  R S  S     + +IA+DP  +
Sbjct: 393 HTDARPFRSETYDNWRLSRPGRRWP--PTCWCAAASTRRGSSASKLCRPQPRIAADPKAA 450

Query: 330 ANRRIDILV 338
            NRRI+IL+
Sbjct: 451 ENRRIEILL 459



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          + IIIK+    +D  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YFNP 
Sbjct: 7  EIIIIKRHGDHEDG-HHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPV 65

Query: 73 GKNLMTAS-KGIFDEQNPP 90
              +T   KG+ D QN P
Sbjct: 66 KLAEVTHDRKGVNDPQNTP 84


>gi|167576627|ref|ZP_02369501.1| Chemotaxis lafU protein [Burkholderia thailandensis TXDOH]
          Length = 311

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 80/312 (25%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKK--AIEQYFNPFGKNLMTASKGIFDEQN 88
           G+WK+ +ADF   LMA F+V+W++N T +  +K  A E   +PF         GIF+   
Sbjct: 27  GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIAGHPF----FDGGVGIFE--- 79

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                                               QR    +    ++QQ E  K    
Sbjct: 80  ------------------------------------QRSRKPVVAPFDAQQPERVKRR-- 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                          E++I+         L + + LA     R+ D A ++   ++G VA
Sbjct: 102 ---------TPGAARERTIDS--------LQQRRALA----ARIMDEATRLG--MNGNVA 138

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
             I           G+ I+I D     MF++ S    P+ + +L  +  VL   T  + I
Sbjct: 139 TAI--------NDDGVRITIHDSDKQGMFERRSDALNPQFVRLLTALVPVLGTVTNKMVI 190

Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHTDA+ + +  +  +NW LS  RA  A Q+L   G+   R+ +ISG       +  +P
Sbjct: 191 VGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMDAQRMFQISGMGDSVPAVPDNP 250

Query: 327 MNSANRRIDILV 338
            +  NRR+++L+
Sbjct: 251 DHDMNRRVELLL 262


>gi|253774745|ref|YP_003037576.1| hypothetical protein ECBD_3391 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300929521|ref|ZP_07144987.1| OmpA family protein [Escherichia coli MS 187-1]
 gi|253325789|gb|ACT30391.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|300462520|gb|EFK26013.1| OmpA family protein [Escherichia coli MS 187-1]
          Length = 211

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   DNW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172


>gi|312970356|ref|ZP_07784537.1| lateral flagellar motor protein B [Escherichia coli 1827-70]
 gi|310337005|gb|EFQ02143.1| lateral flagellar motor protein B [Escherichia coli 1827-70]
          Length = 256

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA+SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRAFSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|170723854|ref|YP_001751542.1| flagellar motor protein MotB [Pseudomonas putida W619]
 gi|169761857|gb|ACA75173.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 339

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      IS+ GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISVSGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+   +   NW LS +RA +A + L+  G  +D+++++ G+A   L    DP N  NRR
Sbjct: 206 KPYSGSSEFGNWELSANRANAARRALVAGGYPDDQVARVVGYASSSLFDRKDPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2  ENNQPIIIKR-VKRYGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70 -NPFG 73
           +P G
Sbjct: 61 KDPIG 65


>gi|66043829|ref|YP_233670.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254536|gb|AAY35632.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330971543|gb|EGH71609.1| flagellar motor protein MotB [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 349

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 65/331 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQY 68
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MA F ++  + +AT +        +
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +P          G  D  +P        IDL     ++ N                   
Sbjct: 61  KDPV---------GFSDSGSP------YVIDLGGSPEMSPNQT----------------- 88

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                L+   Q+    +++  ++E  +   ++ + E+         L  L +E    ++ 
Sbjct: 89  -----LNPEVQTTPSPDTVPLEAENAETKAEAVEQER---------LEMLLQELQTKVEE 134

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 135 NPQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      +SI GHTDA+PF       NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +++++ G+A   L    +P N  NRRIDI+V
Sbjct: 239 QVARVVGYASSALYDRQNPTNPINRRIDIVV 269


>gi|293607844|ref|ZP_06690158.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553]
 gi|292813756|gb|EFF72923.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553]
          Length = 340

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL++L K++ + + +  V  +    +L + T  G+ I IID +N PMF    +   
Sbjct: 127 REQHRLENLKKRLENVIETSPVLKSFRPQMLIDLTTEGLRIQIIDNQNRPMFATGRAEVQ 186

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L+++G VL      +SI GHTDAS +    R   NW LS DRA ++ Q L+  G
Sbjct: 187 PYMRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGG 246

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++E ++ +I G +     +  DP  + NRRI ++V
Sbjct: 247 MNESKVMRIQGLSSSMSLVKDDPYAAVNRRISLVV 281



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          N+  ++I++K  +    ++ GSWKI YADF+T +MAFFLVMW+I+    +  K I +YF
Sbjct: 16 NNHRVVIRRK-KVKGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 73


>gi|120613045|ref|YP_972723.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120591509|gb|ABM34949.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 312

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L++IG  L      IS+ GHTDA
Sbjct: 151 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGSALGGVENRISLAGHTDA 210

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           +P+ N  R   NW LS DRA ++ + L+ +G+ + ++ ++ G A   L    +P    NR
Sbjct: 211 APYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGLAASDLLEPDNPRAPVNR 270

Query: 333 RIDILV 338
           RI I +
Sbjct: 271 RITITI 276



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          II K+V       + G+WKI YADF+T +MAFFL+MW++ +T     + I  YF
Sbjct: 9  IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62


>gi|330901956|gb|EGH33293.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 302

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 65/331 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQY 68
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MA F ++  + +AT +        +
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +P          G  D  +P        IDL     ++ N                   
Sbjct: 61  KDPV---------GFSDSGSP------YVIDLGGSPEMSPNQT----------------- 88

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                L+   Q+    +++  ++E  +   ++ + E+         L  L +E    ++ 
Sbjct: 89  -----LNPEVQTTPSPDTVPIEAENAETKAEAVEQER---------LEMLLQELQTKVEE 134

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 135 NPQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      +SI GHTDA+PF       NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +++++ G+A   L    +P N  NRRIDI+V
Sbjct: 239 QVARVVGYASSALYDRQNPTNPINRRIDIVV 269


>gi|320643247|gb|EFX12446.1| hypothetical protein ECO9389_21954 [Escherichia coli O157:H- str.
           493-89]
 gi|320648894|gb|EFX17512.1| hypothetical protein ECO2687_10031 [Escherichia coli O157:H- str. H
           2687]
          Length = 256

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVQIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|222112258|ref|YP_002554522.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|221731702|gb|ACM34522.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 313

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L +IG  L      IS+ GHTDA
Sbjct: 151 IRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILHQIGAALGGVENRISLSGHTDA 210

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ N  R   NW LS DRA ++ + L+ +G+ + ++ ++ G A   L    +P  + NR
Sbjct: 211 VPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGMAASDLLEPQNPRAAVNR 270

Query: 333 RIDILV 338
           RI I V
Sbjct: 271 RITITV 276



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q IIIK+       P+  G+WKI YADF+T +MAFFL+MW++ +T     + I  YF+  
Sbjct: 7  QPIIIKRAKKRPHAPHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65

Query: 73 GKNLMTASKG 82
           K  M    G
Sbjct: 66 LKVAMQGGDG 75


>gi|121596103|ref|YP_987999.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|120608183|gb|ABM43923.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
          Length = 313

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  + T  G+ I I+D +N PMFD  S++  P    +L +IG  L      IS+ GHTDA
Sbjct: 151 IRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILHQIGAALGGVENRISLSGHTDA 210

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ N  R   NW LS DRA ++ + L+ +G+ + ++ ++ G A   L    +P  + NR
Sbjct: 211 VPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGMAASDLLEPQNPRAAVNR 270

Query: 333 RIDILV 338
           RI I V
Sbjct: 271 RITITV 276



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q IIIK+       P+  G+WKI YADFMT +MAFFL+MW++ +T     + I  YF+  
Sbjct: 7  QPIIIKRAKKRPHAPHG-GAWKIAYADFMTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65

Query: 73 GKNLMTASKG 82
           K  M    G
Sbjct: 66 LKVAMQGGDG 75


>gi|295690006|ref|YP_003593699.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295431909|gb|ADG11081.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 299

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 72/128 (56%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K +L + T  G+ I ++DQ    MF ++S +P     ++L+ + +V+      ++I G
Sbjct: 161 LSKQILIDQTPEGLRIQLVDQEGRSMFQENSKVPNDRARILLRAVAKVITQLPNRVTISG 220

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HT AS +      +W LS  RA ++ Q+L  +GV +DRI ++SG A+     A DP  + 
Sbjct: 221 HTSASAYGKKQDGDWSLSASRADASRQILRAAGVDDDRIYQVSGKANSEPLYADDPTLAG 280

Query: 331 NRRIDILV 338
           NRRI I++
Sbjct: 281 NRRISIVL 288



 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          ++Q I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF 
Sbjct: 5  SEQPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFA 64

Query: 71 P 71
          P
Sbjct: 65 P 65


>gi|194438259|ref|ZP_03070351.1| putative chemotaxis protein [Escherichia coli 101-1]
 gi|297521341|ref|ZP_06939727.1| hypothetical protein EcolOP_27134 [Escherichia coli OP50]
 gi|194422923|gb|EDX38918.1| putative chemotaxis protein [Escherichia coli 101-1]
          Length = 256

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   DNW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217


>gi|317403796|gb|EFV84276.1| chemotaxis protein MotB [Achromobacter xylosoxidans C54]
          Length = 329

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           + RL++L K++ + + +  V  +    +L + T  G+ I IID +N PMF    +   P 
Sbjct: 118 QHRLENLKKRLENVIENSPVLKSFRPQLLIDMTTEGLRIQIIDNQNRPMFATGRAEVQPY 177

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305
              +L+++G VL      +SI GHTDAS +    R   NW LS DRA ++ Q L+  G++
Sbjct: 178 MRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMN 237

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E ++ +I G +     +  DP  + NRRI ++V
Sbjct: 238 ESKVMRIQGLSSSMSLVKDDPYAAVNRRISLVV 270



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  ++I++K  +    ++ GSWKI YADF+T +MAFFLVMW+I+    +  K I +YF 
Sbjct: 5   NNHRVVIRRK-KVHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFR 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLEN 129
              +  +T       E +      ++ +    DE   + N V+ +     +++   RLEN
Sbjct: 64  MPLRVALTGGPSSSAETSAVPGGGRDPLRNDGDERRAQGNRVEAQPKGDAERRDQHRLEN 123


>gi|238784596|ref|ZP_04628602.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC
           43970]
 gi|238714465|gb|EEQ06471.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC
           43970]
          Length = 256

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           DS  G +  K T    ++   E    P  S E+++  K  K +++L++ I    S   A 
Sbjct: 45  DSIDGHEQAKETKSNLAVEVPE----PEQSLEEVVD-KSGKEMEELSRIIMQITSTYDAQ 99

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           + +K    E    G+ I I D +   MF +SS++  P    +L ++          I I 
Sbjct: 100 SNLK---MEVVPQGLRILIQDDKQRDMFQRSSALLTPFFSRLLAELAPAFNEMDNKIIIT 156

Query: 270 GHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDAS +R+  R +NW LS +RA  A++ L+K G+SE+R+ +I+  A   L   ++P+ 
Sbjct: 157 GHTDASRYRDQVRYNNWNLSGERALMAHKALVKGGLSEERVLQINAMADQMLLTPTEPLA 216

Query: 329 SANRRIDILV 338
           ++NRRI+I+V
Sbjct: 217 ASNRRIEIMV 226


>gi|300919511|ref|ZP_07136009.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300413405|gb|EFJ96715.1| OmpA family protein [Escherichia coli MS 115-1]
          Length = 211

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|301019118|ref|ZP_07183322.1| OmpA family protein [Escherichia coli MS 69-1]
 gi|300399377|gb|EFJ82915.1| OmpA family protein [Escherichia coli MS 69-1]
          Length = 211

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|300902537|ref|ZP_07120514.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|301302019|ref|ZP_07208152.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|300405350|gb|EFJ88888.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|300842571|gb|EFK70331.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|315253712|gb|EFU33680.1| OmpA family protein [Escherichia coli MS 85-1]
          Length = 211

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|209745374|gb|ACI70994.1| putative motility protein [Escherichia coli]
          Length = 261

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVQIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|323963541|gb|EGB59099.1| OmpA family protein [Escherichia coli H489]
 gi|323972411|gb|EGB67618.1| OmpA family protein [Escherichia coli TA007]
          Length = 261

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   DNW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222


>gi|311105916|ref|YP_003978769.1| motility protein B 1 [Achromobacter xylosoxidans A8]
 gi|310760605|gb|ADP16054.1| motility protein B 1 [Achromobacter xylosoxidans A8]
          Length = 330

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL++L K++ + + +  V  +    +L + T  G+ I IID +N PMF    +   
Sbjct: 117 REQHRLENLKKRLENVIETSPVLKSFRPQLLIDLTTEGLRIQIIDNQNRPMFATGRADVQ 176

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
           P    +L+++G VL      +SI GHTDAS +    R   NW LS DRA ++ Q L+  G
Sbjct: 177 PYMRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGG 236

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++E ++ +I G +     +  DP  + NRRI ++V
Sbjct: 237 MNESKVLRIQGLSSSMSLVKDDPYAAVNRRISLVV 271



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          N+  ++I++K       ++ GSWKI YADF+T +MAFFLVMW+I+    +  K I +YF
Sbjct: 5  NNHRVVIRRKKGGHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 63


>gi|300977371|ref|ZP_07173862.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|301045873|ref|ZP_07193060.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300302123|gb|EFJ58508.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300409896|gb|EFJ93434.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|315295164|gb|EFU54499.1| OmpA family protein [Escherichia coli MS 153-1]
 gi|315300866|gb|EFU60088.1| OmpA family protein [Escherichia coli MS 16-3]
 gi|324010200|gb|EGB79419.1| OmpA family protein [Escherichia coli MS 57-2]
          Length = 211

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|148549982|ref|YP_001270084.1| flagellar motor protein MotB [Pseudomonas putida F1]
 gi|148514040|gb|ABQ80900.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 346

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    DP N  NRR
Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110
            +P G +  + +  + D    PE +    I+  +    T+ S
Sbjct: 61  QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101


>gi|167035946|ref|YP_001671177.1| flagellar motor protein MotB [Pseudomonas putida GB-1]
 gi|166862434|gb|ABZ00842.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 350

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    DP N  NRR
Sbjct: 206 KPYAGTGEFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
            +P G +  + +  + D    PE + +  I+  +    T+ S 
Sbjct: 61  KDPIGFS-ESGTPYVIDLGGSPELAPEKTINPEVKAEPTQEST 102


>gi|193068683|ref|ZP_03049644.1| putative chemotaxis protein [Escherichia coli E110019]
 gi|192958046|gb|EDV88488.1| putative chemotaxis protein [Escherichia coli E110019]
          Length = 256

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLNNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|313500883|gb|ADR62249.1| MotB [Pseudomonas putida BIRD-1]
          Length = 346

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    DP N  NRR
Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110
            +P G +  + +  + D    PE +    I+  +    T+ S
Sbjct: 61  QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101


>gi|33592172|ref|NP_879816.1| flagellar motor protein MotB [Bordetella pertussis Tohama I]
 gi|33596124|ref|NP_883767.1| flagellar motor protein MotB [Bordetella parapertussis 12822]
 gi|33601523|ref|NP_889083.1| flagellar motor protein MotB [Bordetella bronchiseptica RB50]
 gi|33571817|emb|CAE41326.1| chemotaxis protein MotB [Bordetella pertussis Tohama I]
 gi|33573127|emb|CAE36772.1| chemotaxis protein MotB [Bordetella parapertussis]
 gi|33575959|emb|CAE33038.1| chemotaxis protein MotB [Bordetella bronchiseptica RB50]
 gi|332381588|gb|AEE66435.1| flagellar motor protein MotB [Bordetella pertussis CS]
          Length = 315

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           V  N    +L + T  G+ I I+D +N PMF   S+   P    +L+++G VL      I
Sbjct: 137 VLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKI 196

Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           SI GHTDAS +    R   NW LS DRA ++ Q L+  G+ E ++ +I G A     +  
Sbjct: 197 SIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLVKD 256

Query: 325 DPMNSANRRIDILV 338
           DP  + NRRI ++V
Sbjct: 257 DPFAAVNRRISLVV 270



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADF+T +MAFFLVMW+I+    +  K I +YF
Sbjct: 24 GSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 62


>gi|163744356|ref|ZP_02151716.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381174|gb|EDQ05583.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 309

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +D+A++I+S   G ++D + + V  E +   + + ++DQ    +F + S+   P+T  +L
Sbjct: 161 EDIAERITS--DGELSD-LARNVRLEKSNGALTVQVLDQDERSLFTRGSAEVTPKTRELL 217

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             IG+V+A   + + I GHTDA+ F  N    NW LS DRA +  + LM +G++  R  +
Sbjct: 218 LAIGDVIAEQNQPVEIIGHTDAATFGANNGYTNWELSADRANATRRTLMAAGINGARFMR 277

Query: 312 ISGFAHHRLKIASDPMNSANRRIDI 336
           +SG A  +     DP+ + NRRI I
Sbjct: 278 VSGVADTQPINTIDPLAAENRRISI 302



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          ++ IIIK+  A     ++ G WK+ YADFMT +MAFFL++WI+ A+D++  + +  YF P
Sbjct: 6  NELIIIKRYDAEGGHAHHGGGWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLANYFTP 65


>gi|315287740|gb|EFU47143.1| OmpA family protein [Escherichia coli MS 110-3]
          Length = 211

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  VL      I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|168750213|ref|ZP_02775235.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113]
 gi|168763471|ref|ZP_02788478.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501]
 gi|168770028|ref|ZP_02795035.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486]
 gi|168782991|ref|ZP_02807998.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076]
 gi|168789703|ref|ZP_02814710.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869]
 gi|168800332|ref|ZP_02825339.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508]
 gi|187776213|ref|ZP_02801137.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196]
 gi|189402400|ref|ZP_02782265.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401]
 gi|194432761|ref|ZP_03065046.1| putative chemotaxis protein [Shigella dysenteriae 1012]
 gi|195938633|ref|ZP_03084015.1| hypothetical protein EscherichcoliO157_19762 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807047|ref|ZP_03249384.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811824|ref|ZP_03253153.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818543|ref|ZP_03258863.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397836|ref|YP_002268857.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115]
 gi|217325834|ref|ZP_03441918.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588]
 gi|254791390|ref|YP_003076227.1| hypothetical protein ECSP_0264 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223715|ref|ZP_05937996.1| hypothetical protein EscherichiacoliO157_03796 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255876|ref|ZP_05948409.1| hypothetical protein EscherichiacoliO157EcO_08593 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|187768449|gb|EDU32293.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196]
 gi|188015577|gb|EDU53699.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999606|gb|EDU68592.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355696|gb|EDU74115.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361036|gb|EDU79455.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486]
 gi|189366384|gb|EDU84800.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501]
 gi|189370768|gb|EDU89184.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869]
 gi|189377329|gb|EDU95745.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508]
 gi|194419023|gb|EDX35107.1| putative chemotaxis protein [Shigella dysenteriae 1012]
 gi|208726848|gb|EDZ76449.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733101|gb|EDZ81788.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738666|gb|EDZ86348.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042]
 gi|209159236|gb|ACI36669.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322055|gb|EEC30479.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588]
 gi|254590790|gb|ACT70151.1| chemotaxis motB protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190216|gb|EFW64866.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. EC1212]
 gi|320638165|gb|EFX07914.1| hypothetical protein ECO5101_07089 [Escherichia coli O157:H7 str.
           G5101]
 gi|320654674|gb|EFX22675.1| hypothetical protein ECO7815_10457 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660242|gb|EFX27752.1| hypothetical protein ECO5905_08983 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665008|gb|EFX32118.1| hypothetical protein ECOSU61_13992 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338763|gb|EGD62582.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1044]
 gi|326342450|gb|EGD66230.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1125]
 gi|332097320|gb|EGJ02301.1| lateral flagellar motor protein B [Shigella dysenteriae 155-74]
          Length = 256

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|82775833|ref|YP_402180.1| hypothetical protein SDY_0484 [Shigella dysenteriae Sd197]
 gi|81239981|gb|ABB60691.1| putative motility protein [Shigella dysenteriae Sd197]
          Length = 259

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 67  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 125

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 126 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 185

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 186 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 220


>gi|85859043|ref|YP_461245.1| chemotaxis protein [Syntrophus aciditrophicus SB]
 gi|85722134|gb|ABC77077.1| chemotaxis protein [Syntrophus aciditrophicus SB]
          Length = 254

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 69/124 (55%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V+      G+ I I+D+  + MF   S+ P  +   +L+ + E L  S   I + GHTDA
Sbjct: 127 VMVSIVDNGLKIQIVDKEGSLMFPLGSAEPTFKAKEILRIVSENLKDSPNRIIVEGHTDA 186

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           +PFR+    NW LS  RA +A + L  + +   RI+++ G+A   L I  +PM++ NRRI
Sbjct: 187 APFRSAQTTNWELSTARASAARRELENNSIDPGRIARVIGYADQELFIPQNPMDARNRRI 246

Query: 335 DILV 338
            I+V
Sbjct: 247 SIIV 250



 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          III+K        ++ GSWK+ YADF+T +MAFFL++W+I     + + A+ +YF  F
Sbjct: 8  IIIRKVKKRHHDGHHGGSWKVAYADFVTAMMAFFLLLWLITMVSPEKRSAVAEYFKTF 65


>gi|30061847|ref|NP_836018.1| hypothetical protein S0298 [Shigella flexneri 2a str. 2457T]
 gi|56479639|ref|NP_706230.2| hypothetical protein SF0277 [Shigella flexneri 2a str. 301]
 gi|110804360|ref|YP_687879.1| hypothetical protein SFV_0301 [Shigella flexneri 5 str. 8401]
 gi|30040091|gb|AAP15824.1| putative motility protein [Shigella flexneri 2a str. 2457T]
 gi|56383190|gb|AAN41937.2| putative motility protein [Shigella flexneri 2a str. 301]
 gi|110613908|gb|ABF02575.1| putative motility protein [Shigella flexneri 5 str. 8401]
 gi|281599639|gb|ADA72623.1| putative motility protein [Shigella flexneri 2002017]
          Length = 261

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|26991582|ref|NP_747007.1| flagellar motor protein MotB [Pseudomonas putida KT2440]
 gi|24986670|gb|AAN70471.1|AE016688_10 motility protein, MotB family [Pseudomonas putida KT2440]
          Length = 346

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKVSISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    DP N  NRR
Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110
            +P G +  + +  + D    PE +    I+  +    T+ S
Sbjct: 61  QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101


>gi|310816853|ref|YP_003964817.1| OmpA/MotB [Ketogulonicigenium vulgare Y25]
 gi|308755588|gb|ADO43517.1| OmpA/MotB [Ketogulonicigenium vulgare Y25]
          Length = 284

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 76/335 (22%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q  +Q IIIK+K  +    ++ G+WK+ YADF+T +MAFFL+MWIIN+  ++ +  +   
Sbjct: 16  QTGNQRIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWIINSITEEQRDGLAN- 74

Query: 69  FNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           F   G  + T S    G+F       R SQ++             V   +GS        
Sbjct: 75  FFATGTPVSTVSGGADGMFGG-----RDSQSQ------------QVGPAVGS-------- 109

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                + Y++               + +G    +S+D                    ILA
Sbjct: 110 ----GMDYITGRM-----------PTARGASAAQSSD--------------------ILA 134

Query: 186 MKRKKRLQDLAKKISSTLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
                 L+D+A+ +S   SG  LV D I + ++   T  G++I +    + P+F    ++
Sbjct: 135 ------LEDIARVLSGQ-SGESLVDDAIQRHIITRMTDEGLVIEVFSTPDAPVFQPGGTV 187

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
             P ++ ++Q I  V A     I++  H       +  +  W L+  RA +    L  +G
Sbjct: 188 LTPLSLAIIQMIASVAAQVENGIAVAAHLPQQAGTD--QGAWALTAARADTIRAALEGAG 245

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           V+  R+ +++G A  R  I  DP    N R++I V
Sbjct: 246 VAPVRLRRVTGHA-DRSPITLDPTVQRNDRVEITV 279


>gi|330910071|gb|EGH38581.1| flagellar motor rotation protein MotB [Escherichia coli AA86]
          Length = 256

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|331661626|ref|ZP_08362549.1| putative motility protein [Escherichia coli TA143]
 gi|331060048|gb|EGI32012.1| putative motility protein [Escherichia coli TA143]
          Length = 261

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|227884752|ref|ZP_04002557.1| chemotaxis protein [Escherichia coli 83972]
 gi|227838353|gb|EEJ48819.1| chemotaxis protein [Escherichia coli 83972]
 gi|307552161|gb|ADN44936.1| putative motility protein [Escherichia coli ABU 83972]
          Length = 256

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|313646638|gb|EFS11097.1| lateral flagellar motor protein B [Shigella flexneri 2a str. 2457T]
 gi|332761628|gb|EGJ91908.1| lateral flagellar motor protein B [Shigella flexneri 4343-70]
 gi|332761679|gb|EGJ91958.1| lateral flagellar motor protein B [Shigella flexneri 2747-71]
 gi|332764445|gb|EGJ94678.1| lateral flagellar motor protein B [Shigella flexneri K-671]
 gi|332768577|gb|EGJ98759.1| ompA family protein [Shigella flexneri 2930-71]
 gi|333008733|gb|EGK28197.1| lateral flagellar motor protein B [Shigella flexneri K-218]
 gi|333009709|gb|EGK29159.1| lateral flagellar motor protein B [Shigella flexneri VA-6]
 gi|333022107|gb|EGK41350.1| lateral flagellar motor protein B [Shigella flexneri K-304]
          Length = 256

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|332341583|gb|AEE54917.1| lateral flagellar motor protein B LafU [Escherichia coli UMNK88]
          Length = 256

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|159045920|ref|YP_001534714.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12]
 gi|157913680|gb|ABV95113.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12]
          Length = 272

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 73/327 (22%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           +IIK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K           
Sbjct: 9   VIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK----------- 57

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
                  GI D  NP                       + +   +   +     +NIF  
Sbjct: 58  -------GIADYFNP----------------------TIPVNRISGGGEGMFGGDNIF-- 86

Query: 135 SNSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                      SL R    G ++  +S+ LE     EE                   R+Q
Sbjct: 87  --------SDVSLARSGTGGSENSSRSSQLEALRAAEE------------------ARMQ 120

Query: 194 DLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
            L++ +   LSG   VA+ + + V    T  G+++ + DQ    +F   S+        +
Sbjct: 121 ALSEDLLG-LSGESDVAEQLRRHVSTRVTDRGLVVDLFDQGEATVFVPGSTELTLLGKAL 179

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L+ I EV +     +SI GH  + P     RD W +S  RA+ A   L   G +E RI K
Sbjct: 180 LKVIHEVFSVVDNPLSITGHVPSQPVVLRERDAWEVSTSRAHVARSTLESYGFAESRIMK 239

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
           ++G A  +     D ++S N R++I++
Sbjct: 240 VAGQADRKPAAYPD-ISSKNNRLEIVL 265


>gi|238793598|ref|ZP_04637221.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC
           29909]
 gi|238727013|gb|EEQ18544.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC
           29909]
          Length = 255

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           DS  GK+  K T    ++   E    P  S E+++  K +K +++L++ I    S   A 
Sbjct: 45  DSIDGKEQAKETKSNLAVEVPE----PEQSLEEVVD-KSRKEMEELSRIIMQITSAYDAQ 99

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           + ++    E    G+ I I D +   MF +SS++  P    +L ++          I I 
Sbjct: 100 SNLQ---MEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFNRLLAELAPAFNEMDNKIIIT 156

Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDAS +R+ +  +NW LS +RA  A++ L+K G+SE R+ +I+  A   L   ++P+ 
Sbjct: 157 GHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLSEGRVLQINAMADQMLLDPAEPLA 216

Query: 329 SANRRIDILV 338
           + NRRI+I+V
Sbjct: 217 AKNRRIEIMV 226


>gi|309797860|ref|ZP_07692242.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|308118544|gb|EFO55806.1| OmpA family protein [Escherichia coli MS 145-7]
          Length = 211

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172


>gi|15799935|ref|NP_285947.1| hypothetical protein Z0291 [Escherichia coli O157:H7 EDL933]
 gi|15829511|ref|NP_308284.1| hypothetical protein ECs0256 [Escherichia coli O157:H7 str. Sakai]
 gi|291281074|ref|YP_003497892.1| putative motility protein [Escherichia coli O55:H7 str. CB9615]
 gi|293413506|ref|ZP_06656155.1| hypothetical protein ECDG_00047 [Escherichia coli B185]
 gi|331651164|ref|ZP_08352189.1| putative motility protein [Escherichia coli M718]
 gi|12513001|gb|AAG54555.1|AE005201_8 putative motility protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359714|dbj|BAB33680.1| putative motility protein [Escherichia coli O157:H7 str. Sakai]
 gi|209745376|gb|ACI70995.1| putative motility protein [Escherichia coli]
 gi|209745378|gb|ACI70996.1| putative motility protein [Escherichia coli]
 gi|209745380|gb|ACI70997.1| putative motility protein [Escherichia coli]
 gi|209745382|gb|ACI70998.1| putative motility protein [Escherichia coli]
 gi|290760946|gb|ADD54907.1| Putative motility protein [Escherichia coli O55:H7 str. CB9615]
 gi|291433564|gb|EFF06537.1| hypothetical protein ECDG_00047 [Escherichia coli B185]
 gi|323938776|gb|EGB35022.1| OmpA family protein [Escherichia coli E1520]
 gi|331050905|gb|EGI22957.1| putative motility protein [Escherichia coli M718]
          Length = 261

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|163856411|ref|YP_001630709.1| flagellar motor protein MotB [Bordetella petrii DSM 12804]
 gi|163260139|emb|CAP42440.1| flagellar motor component MotB [Bordetella petrii]
          Length = 312

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 3/154 (1%)

Query: 192 LQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L+ L +++ S L    V  N    +L + T  G+ I I+D +  PMF   S+   P    
Sbjct: 121 LERLKRRLDSMLEENPVLKNFRPQLLIDMTTEGLRIQIVDNQKRPMFATGSAEVQPYMRD 180

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L+++G VL      ISI GHTDA+ +    R   NW LS DRA ++ Q L+  G++E +
Sbjct: 181 ILRELGPVLNELPNKISIAGHTDATQYARGERAYSNWELSADRANASRQELVAGGMAEGK 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + +I G +     +  DP  + NRRI ++V +R+
Sbjct: 241 LMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNRR 274



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          N+  ++I++K      P++ GSWKI YADF+T +MAFFLVMW+I+    +  + + +YF
Sbjct: 5  NNHRVVIRRKRG-GSRPHHGGSWKIAYADFITAMMAFFLVMWLISIVPKEELRGLAEYF 62


>gi|331656310|ref|ZP_08357272.1| MbhA protein [Escherichia coli TA206]
 gi|331054558|gb|EGI26567.1| MbhA protein [Escherichia coli TA206]
          Length = 261

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|26246276|ref|NP_752315.1| hypothetical protein c0378 [Escherichia coli CFT073]
 gi|26106674|gb|AAN78859.1|AE016756_42 MbhA protein [Escherichia coli CFT073]
          Length = 262

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 70  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 129 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 189 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223


>gi|70734060|ref|YP_257700.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf-5]
 gi|68348359|gb|AAY95965.1| motility protein, MotB family [Pseudomonas fluorescens Pf-5]
          Length = 372

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T  G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITPDGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKTVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ GFA   L    DP N  NRR
Sbjct: 205 KPYSGTGDFGNWELSANRANAARRALVAGGYPDPQVARVVGFASSALFDRKDPFNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 7/105 (6%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           EN+Q IIIK  K+ A     ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  
Sbjct: 2   ENNQPIIIKRVKRFAGG---HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAG 58

Query: 68  YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           YF +P G +  + +  I D    PE +  N ++  I      + V
Sbjct: 59  YFKDPIGFS-ESGTPYIIDLGGSPELAPDNTLNPEIKSQPQPDKV 102


>gi|309700460|emb|CBI99754.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli
           ETEC H10407]
          Length = 296

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 104 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 162

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   DNW LS DRA SA +VL ++G
Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 222

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 223 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 257


>gi|281177445|dbj|BAI53775.1| putative motility protein [Escherichia coli SE15]
          Length = 262

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 70  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 129 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 189 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223


>gi|167647023|ref|YP_001684686.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167349453|gb|ABZ72188.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 72/128 (56%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++ + T  G+ I +IDQ    MF ++S  P     ++L+ I +++      I+I G
Sbjct: 161 LSKQIMIDQTPEGLRIQLIDQDGRSMFKENSREPNDRARILLRAIAKIINQLPNRITISG 220

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HT AS     A  +W LS +RA ++ QVL  +GV EDRI ++SG A+     A DP  + 
Sbjct: 221 HTSASAAGKRADSDWALSAERADASRQVLRGAGVDEDRIYQVSGKANSEPLYADDPTLAG 280

Query: 331 NRRIDILV 338
           NRRI I++
Sbjct: 281 NRRISIVL 288



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF P
Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP 65


>gi|83648052|ref|YP_436487.1| flagellar motor protein [Hahella chejuensis KCTC 2396]
 gi|83636095|gb|ABC32062.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 328

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D+R  PMFD   S   P    +L ++ + +A     IS+ GHTDA
Sbjct: 142 LLLDITDEGLRIQIVDKRQRPMFDSGRSELQPYFEEILFELAKSIAKVRNKISVSGHTDA 201

Query: 275 SPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
            PF  + RDN   W LS DRA +A + L++ G+ E R++++ G A   L    DP N  N
Sbjct: 202 QPF--LGRDNYSNWELSADRANAARRALVEGGLPEGRMARVVGLASSVLFDEKDPYNPVN 259

Query: 332 RRIDILV 338
           RRI ILV
Sbjct: 260 RRISILV 266



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
          G+WK+ +ADF T +MAFFLV+W+  A   + K AI  YF +P G
Sbjct: 22 GAWKVAFADFATAMMAFFLVLWLSEAATKEQKDAISGYFTDPVG 65


>gi|300936146|ref|ZP_07151085.1| OmpA family protein [Escherichia coli MS 21-1]
 gi|300458724|gb|EFK22217.1| OmpA family protein [Escherichia coli MS 21-1]
          Length = 307

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|307611161|emb|CBX00805.1| hypothetical protein LPW_25091 [Legionella pneumophila 130b]
          Length = 253

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 14/158 (8%)

Query: 190 KRLQDLAKKIS------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           K+L++L  +I+       +L+GL      K +L +    G+ I +ID +  PMFD  S  
Sbjct: 88  KKLEELKSEINLSMEKDPSLAGLK-----KQLLMDVVSDGLRIQLIDNQKKPMFDVGSDK 142

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLM 300
             PE   +L  I ++L      I+I+GHTDA+P+ N   +   NW LS  RA +A + L+
Sbjct: 143 INPEIEPILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALI 202

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           K+G+ E+++  ++G++   L    +P N  NRRI I+V
Sbjct: 203 KAGMDENKVMTVTGYSSTVLLDKKNPYNPENRRISIIV 240


>gi|300921970|ref|ZP_07138116.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|301325438|ref|ZP_07218924.1| OmpA family protein [Escherichia coli MS 78-1]
 gi|300421640|gb|EFK04951.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300847736|gb|EFK75496.1| OmpA family protein [Escherichia coli MS 78-1]
          Length = 211

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172


>gi|293408386|ref|ZP_06652225.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471564|gb|EFF14047.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|294491414|gb|ADE90170.1| putative chemotaxis protein [Escherichia coli IHE3034]
 gi|307628268|gb|ADN72572.1| hypothetical protein UM146_16065 [Escherichia coli UM146]
 gi|323953128|gb|EGB48996.1| OmpA family protein [Escherichia coli H252]
          Length = 256

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  VL      I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|170681840|ref|YP_001742391.1| hypothetical protein EcSMS35_0284 [Escherichia coli SMS-3-5]
 gi|170519558|gb|ACB17736.1| lateral flagellar motor protein B [Escherichia coli SMS-3-5]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|323171084|gb|EFZ56733.1| lateral flagellar motor protein B [Escherichia coli LT-68]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|300955691|ref|ZP_07168041.1| OmpA family protein [Escherichia coli MS 175-1]
 gi|2494512|sp|Q47154|MBHA_ECOLI RecName: Full=Putative protein mbhA
 gi|984586|dbj|BAA07592.1| MbhA [Escherichia coli W3110]
 gi|1552798|gb|AAB08650.1| MbhA [Escherichia coli]
 gi|300317442|gb|EFJ67226.1| OmpA family protein [Escherichia coli MS 175-1]
          Length = 211

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172


>gi|59889800|emb|CAH19156.1| Lateral flagellar motor protein B (MotB-like) [Escherichia coli]
 gi|284920064|emb|CBG33121.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli
           042]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|323191390|gb|EFZ76652.1| lateral flagellar motor protein B [Escherichia coli RN587/1]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|259417151|ref|ZP_05741070.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346057|gb|EEW57871.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 279

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 79/316 (25%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83
           +WK+ YADF+T +MAFFL+MW++NAT +  +K +  YF+P         G N       +
Sbjct: 27  AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQGDTM 86

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           F E   P+                       IG+T +                       
Sbjct: 87  FTEDVKPQNG---------------------IGATKENPT-------------------- 105

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISST 202
                 D+ + +      D ++S   EE  FL    +E ++    +  +  D+A+ I + 
Sbjct: 106 ------DASRSQGDTGVADDQQSDEAEEANFLK--IEEALMGRGGESMVSIDMARHIVTR 157

Query: 203 LS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           ++  GL+ +      LFET             +  +F+  S  P      +L+ +  V A
Sbjct: 158 VTDEGLIIE------LFET------------EDAKLFENGSERPTILMRDLLRMVARVTA 199

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                ++I GH  ++P        W LS  RA +  ++L   G+   RIS+++G+A   L
Sbjct: 200 SVENNVAIGGHVASTPVVIANNPVWALSHARADATRELLETGGMQAKRISRVTGYADRDL 259

Query: 321 KIASDPMNSANRRIDI 336
             + +PM++ N RI+I
Sbjct: 260 A-SKNPMSARNNRINI 274


>gi|293403376|ref|ZP_06647467.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412]
 gi|298378988|ref|ZP_06988869.1| chemotaxis protein MotB [Escherichia coli FVEC1302]
 gi|291429229|gb|EFF02249.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412]
 gi|298280101|gb|EFI21605.1| chemotaxis protein MotB [Escherichia coli FVEC1302]
          Length = 318

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61 TKKAI 65
           +++I
Sbjct: 72 ERESI 76


>gi|309786020|ref|ZP_07680649.1| lateral flagellar motor protein B [Shigella dysenteriae 1617]
 gi|308926131|gb|EFP71609.1| lateral flagellar motor protein B [Shigella dysenteriae 1617]
          Length = 307

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|218703545|ref|YP_002411064.1| hypothetical protein ECUMN_0293 [Escherichia coli UMN026]
 gi|300899473|ref|ZP_07117721.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|218430642|emb|CAR11508.1| flagellar system protein [Escherichia coli UMN026]
 gi|300356952|gb|EFJ72822.1| OmpA family protein [Escherichia coli MS 198-1]
          Length = 307

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|331671822|ref|ZP_08372618.1| putative motility protein [Escherichia coli TA280]
 gi|331070811|gb|EGI42170.1| putative motility protein [Escherichia coli TA280]
          Length = 318

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61 TKKAI 65
           +++I
Sbjct: 72 ERESI 76


>gi|331645436|ref|ZP_08346540.1| putative motility protein [Escherichia coli M605]
 gi|331045598|gb|EGI17724.1| putative motility protein [Escherichia coli M605]
          Length = 318

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61 TKKAI 65
           +++I
Sbjct: 72 ERESI 76


>gi|312964712|ref|ZP_07778963.1| lateral flagellar motor protein B [Escherichia coli 2362-75]
 gi|312290733|gb|EFR18611.1| lateral flagellar motor protein B [Escherichia coli 2362-75]
          Length = 254

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +V D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 62  ALLKKKSATELGE-LATSINTIVRDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 120

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL ++G
Sbjct: 121 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEEAG 180

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 181 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 215


>gi|306813285|ref|ZP_07447478.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101]
 gi|305854048|gb|EFM54487.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101]
          Length = 307

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|99082778|ref|YP_614932.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99039058|gb|ABF65670.1| Chemotaxis motB protein (Motility protein B) [Ruegeria sp. TM1040]
          Length = 279

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 128/315 (40%), Gaps = 77/315 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83
           +WK+ YADF+T +MAFFL+MW++NAT +  +K +  YF+P         G N       +
Sbjct: 27  AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQGDTM 86

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           F E   P+                       +G+T +             +++ QQS+  
Sbjct: 87  FTEDVKPQNG---------------------VGATKENPTDASRAQGETGVADDQQSDAA 125

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  R  E+                     L     E ++++       D+A+ I + +
Sbjct: 126 EEASFRQIEEA--------------------LMGRGGESMVSI-------DMARHIVTRV 158

Query: 204 S--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +  GL+ +      LFET             +  +F+  S  P      +L+ +  V + 
Sbjct: 159 TDEGLIIE------LFET------------EDATLFEADSERPTVLMRDLLRMVARVTSG 200

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               ++I GH  ++P        W LS  RA    ++L   G+S  RIS+++GFA   L 
Sbjct: 201 VENNVAIGGHVASTPVVIANNPVWALSHARADQTRELLQAGGMSAKRISRVTGFADRDLA 260

Query: 322 IASDPMNSANRRIDI 336
            + +PM+  N RI I
Sbjct: 261 -SQNPMSERNNRITI 274


>gi|117622532|ref|YP_851445.1| hypothetical protein APECO1_1739 [Escherichia coli APEC O1]
 gi|237707752|ref|ZP_04538233.1| MbhA protein [Escherichia sp. 3_2_53FAA]
 gi|115511656|gb|ABI99730.1| putative motility protein MbhA [Escherichia coli APEC O1]
 gi|226898962|gb|EEH85221.1| MbhA protein [Escherichia sp. 3_2_53FAA]
 gi|323958690|gb|EGB54391.1| OmpA family protein [Escherichia coli H263]
          Length = 261

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  VL      I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|218698824|ref|YP_002406453.1| hypothetical protein ECIAI39_0419 [Escherichia coli IAI39]
 gi|218368810|emb|CAR16558.1| flagellar system protein [Escherichia coli IAI39]
          Length = 261

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L +   V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVEFAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|91209318|ref|YP_539304.1| hypothetical protein UTI89_C0270 [Escherichia coli UTI89]
 gi|91070892|gb|ABE05773.1| putative motility protein MbhA [Escherichia coli UTI89]
          Length = 262

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 70  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  VL      I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 129 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 189 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223


>gi|170021342|ref|YP_001726296.1| hypothetical protein EcolC_3350 [Escherichia coli ATCC 8739]
 gi|188495907|ref|ZP_03003177.1| lateral flagellar motor protein B [Escherichia coli 53638]
 gi|169756270|gb|ACA78969.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|188491106|gb|EDU66209.1| lateral flagellar motor protein B [Escherichia coli 53638]
          Length = 307

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 38/65 (58%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|215485380|ref|YP_002327811.1| hypothetical protein E2348C_0225 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215263452|emb|CAS07773.1| flagellar system protein MbhA [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 261

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +V D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIVRDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|157157459|ref|YP_001461420.1| hypothetical protein EcE24377A_0264 [Escherichia coli E24377A]
 gi|157159714|ref|YP_001457032.1| hypothetical protein EcHS_A0258 [Escherichia coli HS]
 gi|191165724|ref|ZP_03027563.1| putative chemotaxis protein [Escherichia coli B7A]
 gi|157065394|gb|ABV04649.1| putative chemotaxis protein [Escherichia coli HS]
 gi|157079489|gb|ABV19197.1| putative chemotaxis protein [Escherichia coli E24377A]
 gi|190904231|gb|EDV63941.1| putative chemotaxis protein [Escherichia coli B7A]
 gi|320176694|gb|EFW51731.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC
           74-1112]
 gi|323169560|gb|EFZ55232.1| lateral flagellar motor protein B [Shigella sonnei 53G]
          Length = 256

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217


>gi|300991173|ref|ZP_07179516.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|300305611|gb|EFJ60131.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|324015565|gb|EGB84784.1| OmpA family protein [Escherichia coli MS 60-1]
          Length = 211

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 19  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 78  IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 138 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172


>gi|74310872|ref|YP_309292.1| hypothetical protein SSON_0272 [Shigella sonnei Ss046]
 gi|293418347|ref|ZP_06660782.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|73854349|gb|AAZ87056.1| putative motility protein [Shigella sonnei Ss046]
 gi|291324875|gb|EFE64290.1| chemotaxis protein MotB [Escherichia coli B088]
          Length = 261

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222


>gi|170767971|ref|ZP_02902424.1| lateral flagellar motor protein B [Escherichia albertii TW07627]
 gi|170123459|gb|EDS92390.1| lateral flagellar motor protein B [Escherichia albertii TW07627]
          Length = 222

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 68  MEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMA 127

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL  +G+ ED++ ++S  A   L  A +P ++ NRRI+I
Sbjct: 128 YKNNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEI 187

Query: 337 LV 338
           +V
Sbjct: 188 MV 189


>gi|256020246|ref|ZP_05434111.1| hypothetical protein ShiD9_15115 [Shigella sp. D9]
 gi|332281408|ref|ZP_08393821.1| flagellar motor region [Shigella sp. D9]
 gi|332103760|gb|EGJ07106.1| flagellar motor region [Shigella sp. D9]
          Length = 307

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P   ++L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKMLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|256024126|ref|ZP_05437991.1| hypothetical protein E4_12175 [Escherichia sp. 4_1_40B]
 gi|300947286|ref|ZP_07161489.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|301019019|ref|ZP_07183235.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|299882424|gb|EFI90635.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|300453087|gb|EFK16707.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|315134915|dbj|BAJ42074.1| putative motility protein [Escherichia coli DH1]
          Length = 256

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217


>gi|325271245|ref|ZP_08137790.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51]
 gi|324103648|gb|EGC00950.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51]
          Length = 340

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    +P N  NRR
Sbjct: 206 KPYAGTGEFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKNPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110
            +P G +  + +  + D    PE +    I+  +    T+ S
Sbjct: 61  QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQPS 101


>gi|193063256|ref|ZP_03044347.1| putative chemotaxis protein [Escherichia coli E22]
 gi|192931164|gb|EDV83767.1| putative chemotaxis protein [Escherichia coli E22]
 gi|323160305|gb|EFZ46258.1| lateral flagellar motor protein B [Escherichia coli E128010]
          Length = 256

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 217


>gi|16125820|ref|NP_420384.1| chemotaxis MotB protein [Caulobacter crescentus CB15]
 gi|221234581|ref|YP_002517017.1| chemotaxis motB protein [Caulobacter crescentus NA1000]
 gi|13422964|gb|AAK23552.1| chemotaxis MotB protein [Caulobacter crescentus CB15]
 gi|220963753|gb|ACL95109.1| chemotaxis motB protein [Caulobacter crescentus NA1000]
          Length = 298

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 4/184 (2%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKI---LAMKRKKRLQDLAKKISSTLSGLVA-DNIVKG 214
           ++ D+ K     E   L   S++ +   LA K +      A+ +  +L  +     + K 
Sbjct: 104 EAQDVTKEAQSSETANLDSASEQALRDALAKKEQDSFASAAQSLRQSLQDMPELAELSKQ 163

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I ++DQ    MF ++S  P     V+L+ + +V+      ++I GHT A
Sbjct: 164 ILIDQTPEGLRIQLVDQEGRSMFKENSREPNDRARVLLRAVAKVINQLPNRVTISGHTSA 223

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + F      +W LS  RA ++ QVL  +GV +DR+ ++SG A+     A DP  + NRRI
Sbjct: 224 NAFGKKQDGDWALSAQRADASRQVLRSAGVDDDRVYQVSGKANSEPLYADDPTLAGNRRI 283

Query: 335 DILV 338
            I++
Sbjct: 284 SIVL 287



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF P
Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP 65


>gi|218688122|ref|YP_002396334.1| hypothetical protein ECED1_0264 [Escherichia coli ED1a]
 gi|218425686|emb|CAR06478.1| flagellar system protein [Escherichia coli ED1a]
          Length = 296

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 222

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 223 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257


>gi|149377734|ref|ZP_01895468.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149357960|gb|EDM46448.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 319

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 71/329 (21%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQYFN 70
           +Q II+K+K  +    ++ GSWK+ +ADF T +MA F ++     A+ +  +        
Sbjct: 3   EQPIIVKRKKKVA-AGHHGGSWKVAFADFATAMMAFFLVLWLTATASPEQIR-------- 53

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                   A +G F            K  +   E  + N VDL+ GS             
Sbjct: 54  --------AVEGYF------------KDPVGFTEGGSPNPVDLE-GSA------------ 80

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                          S+  +S        S D+E+S  + E+  +  L++  +   + ++
Sbjct: 81  ---------------SVINES--------SEDIERSDIQIEDQVVEELAQ-TLEQQQMEE 116

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             QDL ++I    +          +L + T  G+ I I+D+   PMFD   +     +  
Sbjct: 117 LFQDLKERIEQNET---LQEFKDQLLIDITSEGLRIQIVDRSQRPMFDSGRAELKYYSQD 173

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L ++ + L      +SI GHTD++PF       NW LS DRA +A + L+  GV +++I
Sbjct: 174 ILFELAKTLGTVNNKLSITGHTDSTPFSGRPGYTNWELSADRANTARRALVAGGVRQNQI 233

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            ++ G +   L    DP    NRRI I+V
Sbjct: 234 GRVVGLSDSVLFDQDDPQAPVNRRISIIV 262


>gi|324115583|gb|EGC09522.1| OmpA family protein [Escherichia coli E1167]
          Length = 261

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222


>gi|260450574|gb|ACX40996.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|323943350|gb|EGB39503.1| OmpA family protein [Escherichia coli E482]
          Length = 261

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222


>gi|300817251|ref|ZP_07097469.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|307313501|ref|ZP_07593122.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|300530227|gb|EFK51289.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|306906669|gb|EFN37180.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|323181565|gb|EFZ66985.1| lateral flagellar motor protein B [Escherichia coli 1357]
 gi|323379881|gb|ADX52149.1| OmpA/MotB domain protein [Escherichia coli KO11]
          Length = 307

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|258592514|emb|CBE68823.1| Outer membrane protein, OmpA/MotB family [NC10 bacterium 'Dutch
           sediment']
          Length = 308

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  E T  G+ + +I+      FD  SS   P T  +L  I   +A     + + GHTDA
Sbjct: 152 IRIEITSEGLRVQLIEGNRDSFFDLGSSRLKPVTRQLLAAIAHEVAKLPNQVVVEGHTDA 211

Query: 275 SPFR-NIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
            P+  N  RD  NW LS DRA SA + + + G+  +++S++ G+A   L   +DP+++AN
Sbjct: 212 RPYSGNTGRDYSNWELSTDRANSARRTMEEVGLRRNQVSRVIGYADQHLFNPTDPLDTAN 271

Query: 332 RRIDILV 338
           RRI ILV
Sbjct: 272 RRISILV 278



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WK+ YADF+T +MA F+V+WI+  +   TK+AI  YF
Sbjct: 29 AWKVAYADFVTAMMALFIVLWIVGQS-KSTKEAIAGYF 65


>gi|260842477|ref|YP_003220255.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009]
 gi|257757624|dbj|BAI29121.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009]
          Length = 261

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 222


>gi|331681649|ref|ZP_08382282.1| MbhA protein [Escherichia coli H299]
 gi|331080851|gb|EGI52016.1| MbhA protein [Escherichia coli H299]
          Length = 261

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I   GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIFTGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|83311678|ref|YP_421942.1| flagellar motor protein [Magnetospirillum magneticum AMB-1]
 gi|82946519|dbj|BAE51383.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 344

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           +L + T  G+ I I DQ    MF   SS P   T  +L  +  V+    +  I+I GHTD
Sbjct: 192 MLVDNTPEGLRIQITDQEGLAMFPSGSSAPYGHTRAMLDLVSRVVRQLPDNRIAISGHTD 251

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           A PFR+ +   NW LS DRA +  + L+ SGV E RI +I G A       +DP    NR
Sbjct: 252 AIPFRDPSGYTNWELSADRALATRRALIASGVPEGRIDRIVGRADQEPLDKADPKGLRNR 311

Query: 333 RIDILV 338
           RI I++
Sbjct: 312 RISIIL 317



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          E  Q IIIK  KKVA      + G+WK+ YADF+T +MAFFL++W++NA  ++    +  
Sbjct: 3  EGGQQIIIKRVKKVAGG---AHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSN 59

Query: 68 YFNP 71
          YF P
Sbjct: 60 YFAP 63


>gi|110640466|ref|YP_668194.1| hypothetical protein ECP_0259 [Escherichia coli 536]
 gi|191171446|ref|ZP_03032995.1| putative chemotaxis protein [Escherichia coli F11]
 gi|110342058|gb|ABG68295.1| putative chemotaxis membrane protein [Escherichia coli 536]
 gi|190908380|gb|EDV67970.1| putative chemotaxis protein [Escherichia coli F11]
 gi|312944854|gb|ADR25681.1| hypothetical protein NRG857_01255 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320197285|gb|EFW71901.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327]
          Length = 256

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|218557186|ref|YP_002390099.1| hypothetical protein ECS88_0265 [Escherichia coli S88]
 gi|218363955|emb|CAR01620.1| flagellar system protein [Escherichia coli S88]
          Length = 296

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  VL      I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 163 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 222

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 223 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257


>gi|308273452|emb|CBX30054.1| hypothetical protein N47_D28630 [uncultured Desulfobacterium sp.]
          Length = 307

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 2/149 (1%)

Query: 192 LQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L+  A+KI+ T+S     N  K  +    T+ G+ I ++++     FD       P+T+ 
Sbjct: 102 LKSEAEKITKTISQTPEFNKFKDKITVTVTQEGMRIDLLEESEGLFFDIGKIHIKPDTVK 161

Query: 251 VLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +LQ I +  LA     I I G+TDA P+ +    NW LS +RA SA +VL +SG+ +D+I
Sbjct: 162 LLQVIAKSHLAKLKNGIIIEGYTDARPYVSSDYTNWELSTERANSARKVLEESGLRKDQI 221

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
            ++ GFA  +L++   PM+ +NRR+ IL+
Sbjct: 222 LEVRGFADRKLRLPDKPMDFSNRRVSILL 250



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF-DEQNP 89
          +WK+ YADF+T +MA F+V+WI+  +  + K  I  YFN  G        G+  DEQ P
Sbjct: 25 AWKVAYADFVTAMMALFIVLWIVGQS-KEVKHYIGAYFNDPGVFTNGRYGGVLPDEQKP 82


>gi|222032078|emb|CAP74817.1| Protein mbhA [Escherichia coli LF82]
          Length = 261

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 69  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 188 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222


>gi|301643541|ref|ZP_07243583.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|307136895|ref|ZP_07496251.1| hypothetical protein EcolH7_02026 [Escherichia coli H736]
 gi|301078041|gb|EFK92847.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|315616807|gb|EFU97424.1| lateral flagellar motor protein B [Escherichia coli 3431]
          Length = 307

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 38/65 (58%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|260853484|ref|YP_003227375.1| putative lateral flagellar motor protein [Escherichia coli O26:H11
           str. 11368]
 gi|260866430|ref|YP_003232832.1| putative lateral flagellar motor protein [Escherichia coli O111:H-
           str. 11128]
 gi|257752133|dbj|BAI23635.1| predicted lateral flagellar motor protein [Escherichia coli O26:H11
           str. 11368]
 gi|257762786|dbj|BAI34281.1| predicted lateral flagellar motor protein [Escherichia coli O111:H-
           str. 11128]
 gi|323158085|gb|EFZ44184.1| lateral flagellar motor protein B [Escherichia coli EPECa14]
 gi|323178474|gb|EFZ64052.1| lateral flagellar motor protein B [Escherichia coli 1180]
          Length = 307

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|104783884|ref|YP_610382.1| flagellar motor protein MotB [Pseudomonas entomophila L48]
 gi|95112871|emb|CAK17599.1| putative flagellar motor MotB protein [Pseudomonas entomophila L48]
          Length = 341

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+  G  + +++++ G+A   L    +P N  NRR
Sbjct: 206 KPYAGTGDFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRENPFNPVNRR 265

Query: 334 IDILV 338
           IDI+V
Sbjct: 266 IDIIV 270



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          EN+Q II+K+     D  ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2  ENNQPIIVKRVKRFGDG-HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70 -NPFG 73
           +P G
Sbjct: 61 KDPIG 65


>gi|331640759|ref|ZP_08341894.1| putative motility protein [Escherichia coli H736]
 gi|331037557|gb|EGI09777.1| putative motility protein [Escherichia coli H736]
          Length = 318

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 245 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 279



 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 38/65 (58%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61 TKKAI 65
           +++I
Sbjct: 72 ERESI 76


>gi|149189846|ref|ZP_01868126.1| chemotaxis LafU protein [Vibrio shilonii AK1]
 gi|148836332|gb|EDL53289.1| chemotaxis LafU protein [Vibrio shilonii AK1]
          Length = 329

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 134/326 (41%), Gaps = 60/326 (18%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           ++ K+     D   + G+WK+  ADFM  LMA FLV+W++   D + +KAI  +      
Sbjct: 7   VVFKRSGRRHDHEYHGGAWKVALADFMIALMALFLVLWVMQVVDKEERKAIVAHLQ-MAS 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
               ++  +FD        S + IDL+ D  +T                     +++  +
Sbjct: 66  VFDKSTGSLFDTSQ-----SISPIDLASDSSVTSR------------------HDSVHTV 102

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           ++  Q +       RD  +   L   T                           ++RL+ 
Sbjct: 103 TSFFQGD-------RDGPESDSLINGT------------------------FDTQERLEA 131

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LAK ++  +  + AD  V   +   T  G+ I + D     MF +  S   P    +L  
Sbjct: 132 LAKVVNEMMRQINADGNVDVTV---TPQGLRIVLQDDYKQNMFRRGGSTLTPFFEDLLLA 188

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +  V       + I GHTDA+ +R    +  NW LS  RA SA Q L+  G+ E R+ ++
Sbjct: 189 LAPVFQRVENPMIISGHTDATQYRKAFSSSSNWELSSSRANSARQTLVAGGMPEQRVLQV 248

Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338
           +G +   L    DP +S NRRI++ +
Sbjct: 249 TGMSDRALLNQQDPKSSENRRIELFI 274


>gi|325498393|gb|EGC96252.1| hypothetical protein ECD227_2490 [Escherichia fergusonii ECD227]
          Length = 256

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL  +G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P +S NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSSGNRRIEIMV 217


>gi|324019871|gb|EGB89090.1| OmpA family protein [Escherichia coli MS 117-3]
          Length = 211

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 51  MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I
Sbjct: 111 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 170

Query: 337 LV 338
           +V
Sbjct: 171 MV 172


>gi|94312620|ref|YP_585829.1| flagellar motor rotation proteinOmpA/MotB [Cupriavidus
           metallidurans CH34]
 gi|93356472|gb|ABF10560.1| OmpA/MotB, protein that enables flagellar motor rotation
           [Cupriavidus metallidurans CH34]
          Length = 325

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D +N PMF   S+   P    +L++IG VL      +S+ GHTD+
Sbjct: 146 LLLDITSEGLRIQILDTQNRPMFRTGSAAVEPYMRTILREIGPVLNELPNKVSLSGHTDS 205

Query: 275 SPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           + +     A  NW LS DRA ++ Q L+  G+ E ++ ++ G A       +DP+   NR
Sbjct: 206 AKYMMGQRAYSNWELSADRANASRQELVAGGMEEGKLLRVLGLADTMPLEKNDPLAPVNR 265

Query: 333 RIDILV 338
           RI I+V
Sbjct: 266 RISIVV 271



 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMA 46
          I+ KK      P+   SWKI YADFMT +MA
Sbjct: 10 IVIKKAKSHAKPHGNHSWKIAYADFMTAMMA 40


>gi|94970509|ref|YP_592557.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552559|gb|ABF42483.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 264

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 17/166 (10%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +P L ++   A+++    + L K+I  T+                T  G+ I +++    
Sbjct: 87  MPELKEQLQRAIRKMNNFEQLKKQIEITV----------------TSEGLRIELLESAAG 130

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAY 293
             FD  S+ P      +L+ +   L +    ISI GHTD+ PF  N +  NW LS DRA 
Sbjct: 131 TFFDSGSARPNDSGKELLEMLAHELQNLPNTISIEGHTDSKPFVGNGSYSNWELSADRAN 190

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           +A +++  SGV  +++S++ GFA   L+    P + +NRRI ILV+
Sbjct: 191 AARRLMQDSGVRGNQVSQVRGFADQNLRKKDAPEDPSNRRITILVQ 236



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTAS 80
          +WK+ YADF+T +MA F+V+W++N T    K+AI  YF +P G    T S
Sbjct: 23 AWKVAYADFVTAMMALFIVLWLMN-TSKPVKEAISGYFKDPSGTAKKTGS 71


>gi|289207762|ref|YP_003459828.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943393|gb|ADC71092.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 325

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 68/124 (54%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I IID+ N PMFD +SS PLP    +L+++  ++      ISI GHTDA
Sbjct: 152 LLLDITPEGLRIQIIDRENRPMFDTASSTPLPHADAILRELASLINKVPNRISITGHTDA 211

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            P       NW LS DRA +A + L+  G    +++++ G A        DP  + NRRI
Sbjct: 212 RPLLRPDYSNWELSADRANAARRALIAGGAESGQVARVVGLADSVPFTRDDPEAAINRRI 271

Query: 335 DILV 338
            I+V
Sbjct: 272 SIIV 275



 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 3/60 (5%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
          Q II+KKKV      ++ GSWK+ +ADF   +MAFFL++W++ A DD+ +  I +YF NP
Sbjct: 8  QPIIVKKKVVKGG--HHGGSWKVAFADFAIAMMAFFLLLWLLAALDDEQRAGISEYFQNP 65


>gi|239817126|ref|YP_002946036.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239803703|gb|ACS20770.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 315

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ + I+D  N PMFD +S+  +P    +L+++G  L      I++ GHTDA
Sbjct: 135 ILIDITTEGLRLQIVDNENRPMFDLASAQVVPHMRAILRELGPTLNELPNKITLSGHTDA 194

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
             + N  R   NW LS DRA ++ + L+  G++E+++ ++ G A       S+P N  NR
Sbjct: 195 FVYSNGDRSYGNWELSADRANASRRELVMGGMAENKVLRVVGLADSMHLDRSNPRNPINR 254

Query: 333 RIDILV 338
           RI I++
Sbjct: 255 RISIIL 260



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          ++ ++VA      + G WKI YADFMT +MAFFLVMW+++ T    ++ I ++F
Sbjct: 8  VVVRRVAAHGGGGHGGGWKIAYADFMTAMMAFFLVMWLLSNTSPKQREGIAEHF 61


>gi|194427556|ref|ZP_03060104.1| putative chemotaxis protein [Escherichia coli B171]
 gi|194414326|gb|EDX30600.1| putative chemotaxis protein [Escherichia coli B171]
          Length = 256

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P     L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTQLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 217


>gi|320321894|gb|EFW77990.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331001|gb|EFW86975.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872240|gb|EGH06389.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 341

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDYENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|330984570|gb|EGH82673.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 344

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|330886588|gb|EGH20249.1| flagellar motor protein MotB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 341

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|289648637|ref|ZP_06479980.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 350

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|289623746|ref|ZP_06456700.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330865884|gb|EGH00593.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 344

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|283133065|dbj|BAI63831.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci]
          Length = 341

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S     +  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTPNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|257482421|ref|ZP_05636462.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009754|gb|EGH89810.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 341

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|71737470|ref|YP_272857.1| flagellar motor protein MotB [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71558023|gb|AAZ37234.1| motility protein, MotA family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 341

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|218552836|ref|YP_002385749.1| hypothetical protein ECIAI1_0271 [Escherichia coli IAI1]
 gi|218693715|ref|YP_002401382.1| hypothetical protein EC55989_0255 [Escherichia coli 55989]
 gi|218350447|emb|CAU96134.1| flagellar system protein [Escherichia coli 55989]
 gi|218359604|emb|CAQ97145.1| flagellar system protein [Escherichia coli IAI1]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 136 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 195

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I
Sbjct: 196 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEI 255

Query: 337 LV 338
           +V
Sbjct: 256 MV 257


>gi|320183885|gb|EFW58714.1| Flagellar motor rotation protein MotB [Shigella flexneri CDC
           796-83]
          Length = 256

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GH DA  ++N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHIDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  + +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217


>gi|298484924|ref|ZP_07003023.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160611|gb|EFI01633.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 341

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  ++  K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|213967914|ref|ZP_03396060.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1]
 gi|213927257|gb|EEB60806.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1]
          Length = 341

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEGILLALADTIRSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|283784104|ref|YP_003363969.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168]
 gi|282947558|emb|CBG87111.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168]
          Length = 331

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 84/154 (54%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A+ +KK   +L +  +S  S     ++   +  E    G+ + I D +N  MF++ S+  
Sbjct: 133 ALLKKKSATELGELATSIQSIARKAHMETNLEMEIVPQGLRVLIKDDKNRNMFERGSARI 192

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL ++G+
Sbjct: 193 MPFFQSLLTELAPVFDSLDNKIIITGHTDAMAYKSDIYNNWNLSGDRALSARRVLEQAGM 252

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 253 PEDKVMQVSAMADQMLLDAKNPESAGNRRIEIMV 286



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    ++     +  II++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKAANRRDRGAKTTIIRRQIKKNHGGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKT 60

Query: 61  TKKAI------EQYFNPFG---------KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
            ++ I      +  FN  G         + ++  +      ++ P+++S  K ++ + E 
Sbjct: 61  ERENIVAALHGQSIFNGGGLAPLNKIGKQTIVPGASSKSVTRSRPDKASPAKEEVKVSEE 120

Query: 106 ITKNSVDL 113
           + K + D+
Sbjct: 121 VAKKAKDV 128


>gi|331675914|ref|ZP_08376631.1| putative motility protein [Escherichia coli H591]
 gi|331076474|gb|EGI47751.1| putative motility protein [Escherichia coli H591]
          Length = 261

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 101 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 160

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I
Sbjct: 161 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 220

Query: 337 LV 338
           +V
Sbjct: 221 MV 222


>gi|300823443|ref|ZP_07103573.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300524061|gb|EFK45130.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|320201151|gb|EFW75734.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B]
          Length = 256

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 96  MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 155

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I
Sbjct: 156 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 215

Query: 337 LV 338
           +V
Sbjct: 216 MV 217


>gi|302062274|ref|ZP_07253815.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato K40]
          Length = 341

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|209917443|ref|YP_002291527.1| hypothetical protein ECSE_0251 [Escherichia coli SE11]
 gi|209910702|dbj|BAG75776.1| putative motility protein [Escherichia coli SE11]
          Length = 262

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 102 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 161

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I
Sbjct: 162 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 221

Query: 337 LV 338
           +V
Sbjct: 222 MV 223


>gi|323976251|gb|EGB71344.1| OmpA family protein [Escherichia coli TW10509]
 gi|327254574|gb|EGE66190.1| lateral flagellar motor protein B [Escherichia coli STEC_7v]
          Length = 307

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL  +G
Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 233

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|28872066|ref|NP_794685.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|301384434|ref|ZP_07232852.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302132278|ref|ZP_07258268.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28855319|gb|AAO58380.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331014600|gb|EGH94656.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 341

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|85710173|ref|ZP_01041238.1| flagellar motor component [Erythrobacter sp. NAP1]
 gi|85688883|gb|EAQ28887.1| flagellar motor component [Erythrobacter sp. NAP1]
          Length = 319

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281
           GI I ++D  +  MF   ++I   +   +L+ IGEVL      + +RGHTD+ P+R+ I 
Sbjct: 164 GIRIDLVDDADFSMFALGTTILTQDARGLLEVIGEVLEAQRTPLILRGHTDSLPWRDGIT 223

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            +NW LS  RA +  Q L+ SG+  +R ++I G A     IA +P +  NRRI +L+ ++
Sbjct: 224 ANNWSLSAGRAEATRQALIASGLEANRFARIEGVADTEPLIADNPADPRNRRISLLLLEQ 283

Query: 342 Q 342
           Q
Sbjct: 284 Q 284



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--- 71
           II+KK        ++ G+WK+ YADF+T +MAFFL++W++ AT+++ ++ I  YF P   
Sbjct: 13  IIVKKVTIAQGDGHHGGAWKVAYADFVTAMMAFFLLLWLLGATEENQRRGIADYFAPTLV 72

Query: 72  ------FGKNLMTASKGIFDEQNPPERSSQN 96
                  G + M     + D  N P    Q 
Sbjct: 73  KTRQQSAGADGMLGGSSLTDVDNYPNAQGQT 103


>gi|114330218|ref|YP_746440.1| flagellar motor protein MotB [Nitrosomonas eutropha C91]
 gi|114307232|gb|ABI58475.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91]
          Length = 314

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +++L+ L  +I   + S  V +     +L + T  G+ I I+D++N PMF    +   P 
Sbjct: 124 REQLEKLKARIEDAINSNPVLNKFKSQLLLDITSEGLRIQIVDEKNRPMFAIGKAELQPY 183

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305
           T ++L +IG++L      IS+ GHTDA+P+ +  +   NW LS DRA ++ + L+  G++
Sbjct: 184 TKMILHEIGKMLNDVGNKISLSGHTDATPYPSGEKSYSNWELSADRANASRRELIAGGMN 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            +++ ++ G +   +    D  +  NRRI I+V +++
Sbjct: 244 PEKMLRVVGLSSAVMFDKEDSFSPFNRRISIIVMNKK 280



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          G+WKI YADF+T +MAFFL+MW++ +T    K+ I +YF
Sbjct: 25 GAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGISEYF 63


>gi|331666564|ref|ZP_08367438.1| putative motility protein [Escherichia coli TA271]
 gi|331065788|gb|EGI37672.1| putative motility protein [Escherichia coli TA271]
          Length = 307

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  
Sbjct: 147 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 206

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I
Sbjct: 207 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 266

Query: 337 LV 338
           +V
Sbjct: 267 MV 268



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 39/65 (60%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61 TKKAI 65
           +++I
Sbjct: 61 ERESI 65


>gi|330965971|gb|EGH66231.1| flagellar motor protein MotB [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 341

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|86136711|ref|ZP_01055289.1| chemotaxis protein MotB [Roseobacter sp. MED193]
 gi|85826035|gb|EAQ46232.1| chemotaxis protein MotB [Roseobacter sp. MED193]
          Length = 277

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 130/313 (41%), Gaps = 71/313 (22%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW++NAT +  +                  KG+ D  +P  
Sbjct: 27  AWKVAYADFVTAMMAFFLLMWLLNATTEKQR------------------KGLADYFSP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT-RD 150
                             S+ L   S      +Q   +++F      QS    + +   D
Sbjct: 67  ------------------SIPLSRISGGGNGAFQ--GDSMFTEDIQPQSGTGASDINPMD 106

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           ++K +     +D EK+  +E++ F                      + I   L G   ++
Sbjct: 107 AQKAQGETGVSDAEKA--EEDSKF----------------------RAIEEQLQGRGGES 142

Query: 211 IV-----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +V     + ++   T  G+++ + +     +F+   + P P    +++ +  V A  T  
Sbjct: 143 MVSVEMSRHIITRVTDEGLIVELFETDGVSLFEAGGAEPTPLFRDLVRMVARVSASVTND 202

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I+I GH  + P        W +S  RA  A  +L   G+   RI +I+G A  +L + ++
Sbjct: 203 IAISGHIQSHPVVLAQNPVWEMSHARANVARTLLESGGMKSSRIHRITGHADRKLAV-TN 261

Query: 326 PMNSANRRIDILV 338
           PM   N R++I++
Sbjct: 262 PMAVRNNRVEIIL 274


>gi|330960099|gb|EGH60359.1| flagellar motor protein MotB [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 341

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   AI  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAIAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|330951464|gb|EGH51724.1| flagellar motor protein MotB [Pseudomonas syringae Cit 7]
          Length = 351

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGGWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125
            +P G +  + S  + D    PE S    ++  +    + ++V L+  +   K    + +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETAETKAEEVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|296103598|ref|YP_003613744.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058057|gb|ADF62795.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 301

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQRNT 234
           K +I ++ + KR + L K+    L  ++      +N    +L   T  G+LI I D ++ 
Sbjct: 98  KGQIASIDKHKRFESL-KQAKEKLQKMIETDPRLNNFKSNILLNLTNDGLLIQITDSQDR 156

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRA 292
           PMF   S +P      +LQ +  +L      +S+ GHTD+ P+   +    NW LS  RA
Sbjct: 157 PMFRVGSELPESYMNGILQALVPLLQELPNALSLTGHTDSLPYAGGDGGYSNWELSAGRA 216

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            +A +VL++ G++++R  ++ G A       + P ++ NRRI ILV  R
Sbjct: 217 NAARRVLVRGGLNDERFLRVIGTASRMPLENTSPDSAVNRRISILVLSR 265



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          G+WKI YADFMT +MAFFLVMW+++ + D  ++ I  YF
Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLSQSTDMERELIADYF 61


>gi|218550065|ref|YP_002383856.1| hypothetical protein EFER_2750 [Escherichia fergusonii ATCC 35469]
 gi|218357606|emb|CAQ90245.1| flagellar system protein [Escherichia fergusonii ATCC 35469]
          Length = 296

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL  +G
Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 222

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 223 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257


>gi|114320660|ref|YP_742343.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227054|gb|ABI56853.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 285

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 3/126 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           VL + T  G+ I ++D  N PMFD  S+        +L  +  VL      + I GHTDA
Sbjct: 141 VLMDMTPDGLRIQLVDAENRPMFDLGSARLRSYAAEILSGLTGVLERVPNALRISGHTDA 200

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            PF    RD  NW LS DRA +A + L  SG++  R++++ G A  +     +PM   NR
Sbjct: 201 RPFVG-RRDYTNWELSTDRANAARRTLTASGIAPYRVAQVVGVAETQPLDPDNPMAPVNR 259

Query: 333 RIDILV 338
           RI I++
Sbjct: 260 RISIIL 265



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71
          GSWK+ +ADFMT + A FLV+WI+ A DD  + A+  YF NP
Sbjct: 27 GSWKVAFADFMTAMFAMFLVLWIVTAMDDPQRAAVADYFRNP 68


>gi|162147455|ref|YP_001601916.1| chemotaxis protein motB (motility protein B) [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209545564|ref|YP_002277793.1| OmpA/MotB domain-containing protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161786032|emb|CAP55614.1| putative chemotaxis protein motB (Motility protein B)
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533241|gb|ACI53178.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 368

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 7  KNQENDQFIIIKKKVAID--DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
          KN    Q I+I++    D  +  ++ G+WKI YADFMT +M+FFLVMW++NAT D+ ++ 
Sbjct: 3  KNDNKQQPILIRRSDGEDSEEGGHSGGAWKIAYADFMTAMMSFFLVMWLLNATTDEQRRG 62

Query: 65 IEQYFNPF 72
          I Q+FNP 
Sbjct: 63 IAQFFNPM 70



 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  +  R  I I + D  NTPMFD  S+ P      +L +I   LA   E ISI G+TD 
Sbjct: 203 VSIQIGRDDIRIELRDSNNTPMFDSGSATPNRLGKQMLAQIAAWLAPMPEPISIVGYTDG 262

Query: 275 SPF---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           +P+   R     NW LS+ RA  A + L+++G  +  I  +SG +   L + SDP  + N
Sbjct: 263 APYHVGRQWGMSNWTLSVMRADHARETLVQAGYPDRNILDVSGRSDRDLALPSDPSGAGN 322

Query: 332 RRIDILVEDR 341
           RR+ +++  R
Sbjct: 323 RRVVLIMHRR 332


>gi|302189799|ref|ZP_07266472.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           642]
          Length = 349

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 264

Query: 334 IDILVEDRQG 343
           IDI+V  R+ 
Sbjct: 265 IDIVVLTRKA 274



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  +   K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIETETAETKAEAVEQE 119

Query: 126 RLENNIFYLSNSQQ 139
           RLE  +  L N  Q
Sbjct: 120 RLEMLLQELQNKVQ 133


>gi|330807221|ref|YP_004351683.1| Chemotaxis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375329|gb|AEA66679.1| Chemotaxis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 344

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T  G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITPNGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+     +++++++ G+A   L    DP N  NRR
Sbjct: 205 KPYVGKGDFGNWELSANRANAARRALVAGSYPDEQVARVVGYASSALFDRKDPFNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 6/67 (8%)

Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          EN+Q IIIK  K++A     ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  
Sbjct: 2  ENNQPIIIKRVKRIAAG---HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAG 58

Query: 68 YF-NPFG 73
          YF +P G
Sbjct: 59 YFKDPVG 65


>gi|304321119|ref|YP_003854762.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503]
 gi|303300021|gb|ADM09620.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503]
          Length = 254

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 9/152 (5%)

Query: 196 AKKISSTL------SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           AK I S++      SGL  D+  + V    T  GI++ +ID     +F   SS P PE  
Sbjct: 106 AKAIESSVKEMAKASGL--DDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELR 163

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+++     +A   + I I GHTD+  ++  A  N+ LS DRA +A ++L+++GV + R+
Sbjct: 164 VLVKAAASAVAAGGKKIRIVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRL 223

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           ++I+G A  R  I  +P + ANRRI I++ DR
Sbjct: 224 TEITGRA-DREPITDNPADPANRRIAIVLLDR 254



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +N+  II +K++ + +  ++ G WK+ YADF+T +MAFFL+MW++NAT ++ +K I  YF
Sbjct: 3  DNNPTIIKRKRITVVNG-HHGGQWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYF 61

Query: 70 NP 71
           P
Sbjct: 62 AP 63


>gi|237798269|ref|ZP_04586730.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021121|gb|EGI01178.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 346

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDAQVARVVGYASSALYDHENPTNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|330978961|gb|EGH78020.1| flagellar motor protein MotB [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 346

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  +   K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQE 119

Query: 126 RLENNIFYLSNSQQ 139
           RLE  +  L N  Q
Sbjct: 120 RLEMLLQELQNKVQ 133


>gi|115524024|ref|YP_780935.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517971|gb|ABJ05955.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 272

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 69/309 (22%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M +L+AFF+++   +  D D  K +     + FG    +   G+ ++   P
Sbjct: 14  GWFVTFADLMALLLAFFVMLVAFSTQDKDKLKVVAGSMRDAFGVQPDSRYAGVLEQDGVP 73

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                          I+    +  + STNQ              SN+   +   N    D
Sbjct: 74  ---------------ISGKLKNASLVSTNQA-------------SNTPSPDEGDN----D 101

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           S K               K E  F        + +   ++ LQD+ +             
Sbjct: 102 SAK--------------TKAEREF-------ALASASLRQALQDMPELT----------E 130

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           I K V+FE T+ G+ + I DQ    MF + S +P   T +++Q++   L  +   ISI G
Sbjct: 131 ISKNVIFEETKDGLNMEITDQDGRSMFAEGSKVPYDRTRLLVQRLAAPLRATPLRISIAG 190

Query: 271 HTDASPFRNIARDNWR---LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           HT A     I R ++    LS DRA +  Q+L + GV   +I  +SG A  +     D  
Sbjct: 191 HTSAGVV--IGRSDYNAFDLSSDRANAVRQILEREGVPTSQIYAVSGRADSQPLFPDDAT 248

Query: 328 NSANRRIDI 336
            SANRR+ I
Sbjct: 249 LSANRRVTI 257


>gi|51597618|ref|YP_071809.1| hypothetical protein YPTB3318 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590900|emb|CAH22556.1| Putative chemotaxis membrane protein [Yersinia pseudotuberculosis
           IP 32953]
          Length = 264

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 69/299 (23%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN---PPERSSQNKIDL 100
           +MA F+V+WI+    ++ ++ I    N          K IF +Q+    P +S      L
Sbjct: 1   MMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPSKSKSGGGKL 51

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
           S       NS+D                       N Q  E   N      E  K L + 
Sbjct: 52  S-------NSID----------------------GNEQAKETKSNLAIEVPEPEKSLEEV 82

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D                        K +  +++L++ I    S   A N    +  E  
Sbjct: 83  VD------------------------KSRHEMEELSRIIMQITS---AYNAQSNLQMEVV 115

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN- 279
             G+ I I D +   MF +SS++  P    +L ++          I I GHTDAS +R+ 
Sbjct: 116 PQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQ 175

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  +NW LS +RA  A++ L+  G+ E R+ +I+  A   L   +DP+ + NRRI+I+V
Sbjct: 176 LLYNNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMV 234


>gi|289672567|ref|ZP_06493457.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 240

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 91  ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 150

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 151 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 210

Query: 334 IDILV 338
           IDI+V
Sbjct: 211 IDIVV 215


>gi|330939854|gb|EGH43087.1| flagellar motor protein MotB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 333

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 132 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 191

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 192 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 251

Query: 334 IDILV 338
           IDI+V
Sbjct: 252 IDIVV 256



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89
           G+WKI +ADF T +MAFFLV+W++++   +   A+  YF +P G +  + S  + D    
Sbjct: 9   GAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFS-DSGSPYVIDLGGS 67

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFYLSNSQQ 139
           PE S    ++  +    + ++V ++  +   K +    +RLE  +  L N  Q
Sbjct: 68  PEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQERLEMLLQELQNKVQ 120


>gi|149184216|ref|ZP_01862534.1| OmpA/MotB [Erythrobacter sp. SD-21]
 gi|148831536|gb|EDL49969.1| OmpA/MotB [Erythrobacter sp. SD-21]
          Length = 276

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 197 KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           K+I+S +S ++  +     +++ V    T TGI I ++D  N  MF   +++   +   +
Sbjct: 126 KRINSRVSKMIESDKELKRLMRQVRMIDTTTGIRIDLVDDANFSMFSLGTTVLTNDAREL 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  I   LA     I++RGHTDA  +R  +R +NW LS  RA    Q L++ G++++R  
Sbjct: 186 LVVIAAALAPEGGKITVRGHTDALRYRYPSRVNNWSLSAGRAEETRQTLIREGINQERFR 245

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +I G A     I  +P +  NRRI I +ED
Sbjct: 246 RIEGVAATEPLIGDNPSDPRNRRISISLED 275



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G     N+   II KK+ + +  ++ G+WK+ YADF+T +MAFFL++W++ AT +D +K 
Sbjct: 3   GAATGRNEPAPIIVKKITVVEAGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEDQRKG 62

Query: 65  IEQYFNP---------FGKNLMTASKGIFDEQNPPERSSQN 96
           +  YF P          G + M     + D  N P  + Q 
Sbjct: 63  LADYFTPTLVKTKEQSAGSDGMLGGASLTDVDNYPHAAGQT 103


>gi|304311521|ref|YP_003811119.1| Chemotaxis protein MotB [gamma proteobacterium HdN1]
 gi|301797254|emb|CBL45474.1| Chemotaxis protein MotB [gamma proteobacterium HdN1]
          Length = 459

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++ + T  G+LI ++D+   PMFD   +   P    +L+ I + L  +   +SI GHTDA
Sbjct: 178 IIIKITEDGLLIEVVDKDKRPMFDLGKTSVKPYFNSILKAIAKTLEGTHNPLSISGHTDA 237

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            PF       NW LS DRA +A + L+K+G+ +++I+++ G A   L     P    NRR
Sbjct: 238 VPFTESENYTNWELSSDRANAARRALLKAGMKKEQIARVVGLADSILFDEKHPDAPINRR 297

Query: 334 IDILV 338
           I IL 
Sbjct: 298 ISILA 302



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
          G+WK+ +ADF+T +MA FLV+W+I +T    K AI  YF NP G
Sbjct: 25 GAWKVAFADFVTAMMALFLVLWLIESTTQAEKLAISMYFSNPTG 68


>gi|238790287|ref|ZP_04634061.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii
           ATCC 33641]
 gi|238721637|gb|EEQ13303.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii
           ATCC 33641]
          Length = 241

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 9/190 (4%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           DS  G++  K T    ++   E    P  S E ++  K ++ +++L++ I    S   A 
Sbjct: 31  DSIDGQEQAKETKSNLAVEVPE----PEQSLEDVVD-KSRQEMEELSRIIMQITSAYDAQ 85

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           +    +  E    G+ I I D +   MF +SS++  P    +L ++          I I 
Sbjct: 86  S---NLHMEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIIT 142

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDAS +R+    +NW LS +RA  A++ L+K G+++ R+ +I+   H  L   ++P+ 
Sbjct: 143 GHTDASRYRDQELYNNWNLSGERALMAHKALVKGGLADGRVLQINAMGHQMLLHETEPLA 202

Query: 329 SANRRIDILV 338
           + NRRI+I++
Sbjct: 203 AKNRRIEIMI 212


>gi|313672698|ref|YP_004050809.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939454|gb|ADR18646.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 276

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 196 AKKISSTLSGLVADNIVK---GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +K+  +L G+V   + +    ++  TT  GI I +ID+   P+F   S+        VL
Sbjct: 111 GEKVKESLMGVVKTQLSEFSDQIMVSTTPEGIRIDVIDKTGNPIFSSGSASLNTNGKAVL 170

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           + +   L   +  I I GHTDA  +R     NW LS+ RA +A   L+ +G   ++IS +
Sbjct: 171 KVLANTLNELSNKIVIEGHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSV 230

Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338
           +G+A  R  +  +P +  NRRI  L+
Sbjct: 231 AGYAATRPIVKDNPNDPMNRRISFLI 256



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------GKNLMTASKG-I 83
           G+WKI YADF+T +MAFFLVMW++N T ++ +  I  YF  F      G ++M    G  
Sbjct: 24  GAWKIAYADFVTAMMAFFLVMWLLNMTSEEKRAKIAMYFRTFSIFEKAGGSIMEGGTGKP 83

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKN 109
           F+     +     KI++ I    T+N
Sbjct: 84  FEADKKGQAQIVEKIEVEIAATATEN 109


>gi|312958642|ref|ZP_07773162.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311287185|gb|EFQ65746.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 339

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           + FE T  G+ I I D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ISFEITPEGLRIQITDAANRPMFDSGSARLKPYFEDILLAMADTIKTVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+     + +++++ GFA  +L    DP N ANRR
Sbjct: 205 KPYAGQGDFGNWELSANRANAARRALVAGSYPDPQVARVVGFASSQLFDHKDPFNPANRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 10  ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           EN+Q IIIK  K+ A     ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  
Sbjct: 2   ENNQPIIIKRVKRFAAG---HHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAG 58

Query: 68  YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           YF +P G +  + +  + D    PE + +  I+  +     +  + ++
Sbjct: 59  YFKDPIGFS-ESGTPFVIDLGGSPELAPERTINPEVKTEAPQEKIPIE 105


>gi|77456741|ref|YP_346246.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf0-1]
 gi|77380744|gb|ABA72257.1| chemotaxis MotB protein [Pseudomonas fluorescens Pf0-1]
          Length = 355

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T  G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITPNGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+  N    NW LS +RA +A + L+     + +++++ G+A   L    +P N  NRR
Sbjct: 205 KPYVGNGDFGNWELSANRANAARRALVAGSYPDSQVARVVGYASSALFDKENPFNPVNRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          EN+Q IIIK+   I    ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2  ENNQPIIIKRVKRIAGG-HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70 -NPFG 73
           +P G
Sbjct: 61 KDPVG 65


>gi|330873802|gb|EGH07951.1| flagellar motor protein MotB [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 341

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF  N    NW LS +RA +A + L+     E++++++ G A   L    +P    NRR
Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPEEQVARVVGHASSVLYDRDNPTGPINRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125
            +P G +  + S  + D    PE S    ++  +    + ++V ++  ++  K +    +
Sbjct: 61  KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119

Query: 126 RLE 128
           RLE
Sbjct: 120 RLE 122


>gi|255021445|ref|ZP_05293492.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969150|gb|EET26665.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 307

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L   T  G+ I ++D    PMF   S++  P    +   I   L      ISI GHTDA
Sbjct: 148 LLISITPEGLRIQVVDSSKRPMFANGSTVLEPYARTIFSAIAPTLDELPNRISITGHTDA 207

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
             + N  R   N+ LS  RA S  Q+L++SG++E+++ ++ G     L +  DP +  NR
Sbjct: 208 LRYLNEGRGYSNFNLSAGRANSVRQILVQSGLAENKVLRVVGMGSAVLFVPKDPDSPLNR 267

Query: 333 RIDILVEDR 341
           R+ I+V  R
Sbjct: 268 RVSIVVLSR 276



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 10 ENDQFIIIKKKVAIDDTPN-NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          E  Q I+IK+   I  T   + G+WKI YADF+T LMAFFL+MW++ +T   T + I Q+
Sbjct: 5  EKSQPIVIKR---IKKTAGGHGGAWKIAYADFVTALMAFFLLMWLLGSTTKATLQGIAQW 61

Query: 69 F-NPFGKNLM 77
          F NP   +LM
Sbjct: 62 FKNPEQVSLM 71


>gi|300697987|ref|YP_003748648.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CFBP2957]
 gi|299074711|emb|CBJ54269.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CFBP2957]
          Length = 314

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFGNASAEVQPYMRTILRELGAALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|121600109|ref|YP_994715.1| flagellar motor protein [Burkholderia mallei SAVP1]
 gi|124386114|ref|YP_001027662.1| putative chemotaxis MotB protein [Burkholderia mallei NCTC 10229]
 gi|121228919|gb|ABM51437.1| flagellar motor protein [Burkholderia mallei SAVP1]
          Length = 245

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 184 LAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           L  + + RL DL  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS 
Sbjct: 33  LERREQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSD 92

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+
Sbjct: 93  AVEPYMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELI 152

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
             G+ E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 153 AGGMDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 194


>gi|307824077|ref|ZP_07654304.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307734861|gb|EFO05711.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 302

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E T  G+ I I+D +N PM+  +S+   P+  ++L+ +  V+      +S+ GHTDA P
Sbjct: 151 LEITSEGLRILIVDAQNRPMYKLASAETEPQIKLILRALAPVINELPNKVSLNGHTDARP 210

Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSANRR 333
           F    +   NW LS DRA +A   L ++G++E++I ++ G +        ++P++  NRR
Sbjct: 211 FPPNQKKYTNWELSSDRANAARYELNQAGLAEEKILRVIGLSSSVPYSATAEPLDPINRR 270

Query: 334 IDILVEDRQ 342
           I I+V +++
Sbjct: 271 ISIIVMNKK 279



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-N 70
          DQ  II KKV      ++ G+WK+ YADF+T +MAFFL+MW++  T +  +K I +YF +
Sbjct: 3  DQQPIIVKKVKKGGHAHHGGAWKLAYADFVTAMMAFFLLMWLLGTTSEPERKGIAEYFQD 62

Query: 71 PF 72
          PF
Sbjct: 63 PF 64


>gi|238563173|ref|ZP_04610426.1| flagellar motor protein [Burkholderia mallei GB8 horse 4]
 gi|251767164|ref|ZP_04819981.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20]
 gi|238521179|gb|EEP84632.1| flagellar motor protein [Burkholderia mallei GB8 horse 4]
 gi|243063600|gb|EES45786.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20]
          Length = 260

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 184 LAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           L  + + RL DL  K+ + + +        + +  ++T  G+ I I+D +  PMF  SS 
Sbjct: 48  LERREQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSD 107

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L++IG+ L      I ++GHTDA P+    +   NW LS DRA ++ + L+
Sbjct: 108 AVEPYMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELI 167

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
             G+ E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 168 AGGMDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 209


>gi|83747601|ref|ZP_00944638.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|207738644|ref|YP_002257037.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum
           IPO1609]
 gi|83725781|gb|EAP72922.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|206592012|emb|CAQ58918.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum
           IPO1609]
          Length = 314

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGSALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|300694372|ref|YP_003750345.1| chemotaxis protein motb (motility protein b), flagellar motor
           protein [Ralstonia solanacearum PSI07]
 gi|299076409|emb|CBJ35725.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum PSI07]
          Length = 314

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGAALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|126417355|gb|ABO13880.1| MotB [Ralstonia solanacearum]
          Length = 314

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYLRTILRELGAALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|311695399|gb|ADP98272.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 246

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D+   PMFD   +     +  +L ++ + L      +SI GHTD+
Sbjct: 65  LLIDITDEGLRIQIVDRSGRPMFDSGRAELKYYSQDILFELAKTLGSVNNKLSITGHTDS 124

Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS DRA +A + L+  GV + +I+++ G +   L    DP    NRR
Sbjct: 125 TPFSGRPGYTNWELSADRANTARRALVAGGVRQQQIARVVGLSDSVLFDKEDPNAPVNRR 184

Query: 334 IDILV 338
           I I+V
Sbjct: 185 ISIIV 189


>gi|218886185|ref|YP_002435506.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757139|gb|ACL08038.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 241

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 99/314 (31%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           GSWK+ YADF+T +MAFFL+MWI+N T  +TK+A+  YF        +  + +FD  N  
Sbjct: 5   GSWKVAYADFVTAMMAFFLLMWILNMTPPETKQALAGYF--------STERSLFDSSN-- 54

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                               + NN F                  
Sbjct: 55  ---------------------------------VSPVANNPFV----------------- 64

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
             +G D   + D + S  ++ +Y          +A K K+ +  +A  I    SG+ AD+
Sbjct: 65  --QGVDKLDTRDFKVSETEKSHY---------AIAQKLKQMM--MADAIPQNASGISADD 111

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           +           G+L+ +    +  MF   S+  +PE   VL ++ ++L      + +RG
Sbjct: 112 V-----------GVLLRV---NSDVMFKAGSAELVPEGSRVLDEVIKILREYNLYLMVRG 157

Query: 271 HTD------ASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIA 323
           H+D       SP+ +    NW LS  RA +A + +++  G+   R+  I+      ++  
Sbjct: 158 HSDSGEVAAGSPYPS----NWELSGARAAAAVRYIIEHGGIKPTRLRGIAYADTRPMEPN 213

Query: 324 SDPMN-SANRRIDI 336
           + P + S NRR++ 
Sbjct: 214 TTPESRSKNRRVEF 227


>gi|126443721|ref|YP_001061208.1| chemotaxis LafU protein [Burkholderia pseudomallei 668]
 gi|126223212|gb|ABN86717.1| chemotaxis LafU protein [Burkholderia pseudomallei 668]
          Length = 311

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 80/312 (25%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WK+ +ADF   LMA F+V+W++N T +  +K +       G+       GIF+     
Sbjct: 27  GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                             QR    +    ++QQ +  +    R 
Sbjct: 80  ----------------------------------QRSRKPVVAPFDAQQPDRMRR---RT 102

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--STLSGLVA 208
           S   +        E++I+         L + + LA     R+ D A ++     ++  + 
Sbjct: 103 SGAAR--------ERTIDS--------LQQRRALA----ARIMDEASRLGMDGNVATAIN 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           D+ V+  + ++ + G+     D  N P             I +L  +  VL   T  + I
Sbjct: 143 DDGVRITIHDSDKQGMFERRSDALNPPF------------IRLLTALVPVLGTVTNKMVI 190

Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHTDA+ + +  +  +NW LS  RA  A QVL   G+   R+ +ISG       +  +P
Sbjct: 191 VGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNP 250

Query: 327 MNSANRRIDILV 338
            +  NRR+++L+
Sbjct: 251 NHDMNRRVELLL 262


>gi|134280878|ref|ZP_01767588.1| chemotaxis LafU protein [Burkholderia pseudomallei 305]
 gi|254182925|ref|ZP_04889518.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655]
 gi|254299720|ref|ZP_04967169.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e]
 gi|125657184|gb|ABN48672.1| chemotaxis LafU protein [Burkholderia pseudomallei]
 gi|134247900|gb|EBA47984.1| chemotaxis LafU protein [Burkholderia pseudomallei 305]
 gi|157809631|gb|EDO86801.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e]
 gi|184213459|gb|EDU10502.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655]
          Length = 311

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 80/312 (25%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WK+ +ADF   LMA F+V+W++N T +  +K +       G+       GIF+     
Sbjct: 27  GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                             QR    +    ++QQ +  +    R 
Sbjct: 80  ----------------------------------QRSRKPVVAPFDAQQPDRMRR---RT 102

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--STLSGLVA 208
           S   +        E++I+         L + + LA     R+ D A ++     ++  + 
Sbjct: 103 SGAAR--------ERTIDS--------LQQRRALA----ARIMDEASRLGMDGNVATAIN 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           D+ V+  + ++ + G+     D  N P             I +L  +  VL   T  + I
Sbjct: 143 DDGVRITIHDSDKQGMFERRSDALNPPF------------IRLLTALVPVLGTVTNKMVI 190

Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHTDA+ + +  +  +NW LS  RA  A QVL   G+   R+ +ISG       +  +P
Sbjct: 191 VGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNP 250

Query: 327 MNSANRRIDILV 338
            +  NRR+++L+
Sbjct: 251 NHDMNRRVELLL 262


>gi|299069796|emb|CBJ41076.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CMR15]
          Length = 314

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGVALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMQPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|207723077|ref|YP_002253485.1| chemotaxis motility protein b [Ralstonia solanacearum MolK2]
 gi|206588269|emb|CAQ18823.1| probable chemotaxis motility protein b [Ralstonia solanacearum
           MolK2]
          Length = 171

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 1   MLIDMTSEGLRIQIVDQQNRPMFANASAEVEPYMRTILRELGSALNDVPNPISLSGHTDA 60

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 61  TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 120

Query: 334 IDILV 338
           I I+V
Sbjct: 121 ISIVV 125


>gi|254473231|ref|ZP_05086629.1| chemotaxis MotB protein [Pseudovibrio sp. JE062]
 gi|211957952|gb|EEA93154.1| chemotaxis MotB protein [Pseudovibrio sp. JE062]
          Length = 286

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 53/314 (16%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFD 85
           P     W + +AD M++L+ FF+++   +  D    + +     + FG   +T   G+ +
Sbjct: 9   PAGAPGWMVTFADLMSLLVCFFVLIISFSVQDKQKLQVVAGSIKDAFGIKQVTKRAGVLE 68

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            +  P R      D++ ++ IT    D    S  +K++                      
Sbjct: 69  IEGVPLRDFMK--DITYEKQIT--DADFATESHPEKRK---------------------- 102

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
              +  E      K  D+EK              +    A+  ++  Q++ +        
Sbjct: 103 ---QGPEANTHTTKKADIEKP------------RQFATAAVSLRQAFQEMPEITE----- 142

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
            +++NI+     E T  G+ I I+DQ    M+ + S  P   T  +L K+  VLA     
Sbjct: 143 -ISNNII----LEETDEGLNILIVDQEGRSMYPEGSKYPYEITRRLLAKMAPVLAKLPNR 197

Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           + I GHT       + +   W LS DRA +A Q+L + G+  + I  + G A       +
Sbjct: 198 VRITGHTTTGQLITSPSETGWELSADRANTARQILSEYGLPSNNIHSVVGKADTEPLFPN 257

Query: 325 DPMNSANRRIDILV 338
           DP  +ANRRI IL+
Sbjct: 258 DPYLAANRRISILL 271


>gi|17549629|ref|NP_522969.1| flagellar motor protein MotB [Ralstonia solanacearum GMI1000]
 gi|17431883|emb|CAD18561.1| probable chemotaxis (motility protein b) transmembrane [Ralstonia
           solanacearum GMI1000]
          Length = 314

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGVALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|126176136|ref|YP_001052285.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125999341|gb|ABN63416.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 306

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +A+NI   ++ +    GI I I D  N  MF + S+   P    +L  +G +L + T  +
Sbjct: 143 MAENIAVTIVPQ----GIRILIHDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSM 198

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            I GHTD++P+      NW LS +RA  A +VL + GV  D++ +++G A     IA+D 
Sbjct: 199 VISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQVIQVTGMADQIPYIATDT 258

Query: 327 MNSANRRIDILV 338
             +ANRRI+ L+
Sbjct: 259 AAAANRRIEALI 270



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70
          IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY     N
Sbjct: 8  IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67

Query: 71 PFG 73
          P G
Sbjct: 68 PTG 70


>gi|304412488|ref|ZP_07394094.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307307147|ref|ZP_07586885.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304349130|gb|EFM13542.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306910386|gb|EFN40817.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 306

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +A+NI   ++ +    GI I I D  N  MF + S+   P    +L  +G +L + T  +
Sbjct: 143 MAENIAVTIVPQ----GIRILIHDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSM 198

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            I GHTD++P+      NW LS +RA  A +VL + GV  D++ +++G A     IA+D 
Sbjct: 199 VISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQVIQVTGMADQIPYIATDT 258

Query: 327 MNSANRRIDILV 338
             +ANRRI+ L+
Sbjct: 259 AAAANRRIEALI 270



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70
          IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY     N
Sbjct: 8  IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67

Query: 71 PFG 73
          P G
Sbjct: 68 PTG 70


>gi|114765236|ref|ZP_01444368.1| OmpA/MotB [Pelagibaca bermudensis HTCC2601]
 gi|114542371|gb|EAU45399.1| OmpA/MotB [Roseovarius sp. HTCC2601]
          Length = 329

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
           F+ T  G+ I I+D+    MF   S+     T  +L+ I + +      ++I GHTD+ P
Sbjct: 194 FDRTENGLEIQIVDKSGESMFATGSARIQDRTRDLLRIIADAVVELPNELTISGHTDSVP 253

Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           + R     NW LS DRA +  +VLM +GVS +RI++ISG A         P    NRRI 
Sbjct: 254 YTRAATYSNWELSADRANATRRVLMANGVSPERITRISGLADTEPLNPGSPDAPENRRIS 313

Query: 336 ILVE 339
           + V+
Sbjct: 314 VTVQ 317



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N+Q I+IK+    D   ++ G+WK+ YADFMT +MAFFL++WI+ A+D++  + +  YF 
Sbjct: 5  NEQPIVIKRIEEDDGHGHHGGAWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLADYFT 64

Query: 71 P 71
          P
Sbjct: 65 P 65


>gi|226327780|ref|ZP_03803298.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198]
 gi|225203484|gb|EEG85838.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198]
          Length = 350

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I IID+ N PMF   S+   P    +L  I  +L  +   IS+ GHTD 
Sbjct: 136 LLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIAPILNDTPYKISLSGHTDD 195

Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ + A    NW LS DRA ++ + L+ +G++E ++ ++ G A     +  D   +ANR
Sbjct: 196 IPYASGAFKYSNWELSTDRANASRRELIGAGLNEWKVLRVVGMASTVHLVKEDGFAAANR 255

Query: 333 RIDILVEDRQG 343
           RI ILV  +Q 
Sbjct: 256 RISILVLTKQA 266



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N Q I +KK+       +  G+WKI YADFMT +MAFFLVMW+++ +       + +YF 
Sbjct: 4   NSQIIRVKKRGRKQHNAHG-GAWKIAYADFMTAMMAFFLVMWLLSISSPQELTRVAEYFR 62

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +   +   D  NP     ++ +  +  + + K   D ++   N+K+Q++RL+ N
Sbjct: 63  TPLKVAIEKGRFSGDATNPIPGGGRDPV-YNEGDILPKGQEDKQL---NEKQQFRRLKEN 118

Query: 131 I 131
           +
Sbjct: 119 L 119


>gi|296531741|ref|ZP_06894566.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957]
 gi|296267924|gb|EFH13726.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957]
          Length = 309

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  E T  G+ + I D+   PMF  +++ P P    +L+ +G VLA     + + GHTDA
Sbjct: 163 IQLEMTPEGLRLQIFDRDGQPMFAPAATEPTPRLARILEVVGSVLASVPNEVVVSGHTDA 222

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            PF+     NW LS DRA +A + L +SGV   R+ ++   A     +A +P +  NRRI
Sbjct: 223 QPFQRGNYSNWELSADRANAARRALERSGVRPARMFRVEAKAAVEPLLAEEPNDPRNRRI 282

Query: 335 DILV 338
            + V
Sbjct: 283 AVTV 286



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +IIKK     D  +  G WKI YADF+T +MAFFLVMW++++T +  ++ I Q+F 
Sbjct: 12 VIIKKHHGEHDDEHG-GQWKIAYADFVTAMMAFFLVMWLLSSTTESQREGIAQFFT 66


>gi|238756396|ref|ZP_04617706.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473]
 gi|238705369|gb|EEP97776.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473]
          Length = 354

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N  R
Sbjct: 112 GLRIQIIDSQNRPMFQMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGER 171

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G++E ++ ++ G A   RLK   A DP+   NRRI IL
Sbjct: 172 GYSNWELSADRANASRRELLSGGLAEGKVLRVVGMASTMRLKEQGADDPV---NRRISIL 228

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 229 VLNKQ 233


>gi|91976556|ref|YP_569215.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91683012|gb|ABE39314.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 273

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 64/307 (20%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M +L+AFF+++   +  D D  K +       FG    +   GI +    P
Sbjct: 14  GWFVTFADLMALLLAFFVMLVAFSTQDKDKLKIVAGSMREAFGVQNDSRYSGIIENDGLP 73

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            R           EH+                           LS S+        +TRD
Sbjct: 74  TRGKVKNT-----EHVNPE------------------------LSTSKP---APGEVTRD 101

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                        E    KEE  F        + +   ++ LQDL  +IS          
Sbjct: 102 -------------EGVNTKEEREF-------ALASASLRQALQDL-PEIS---------E 131

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+FE T+ G+ + I+DQ    MF   S  P   T ++LQ++   L  +   +SI G
Sbjct: 132 LSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRLLLQRLAAPLRATPLRVSIVG 191

Query: 271 HTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HT A      +  N + LS DRA    Q+L + G+    I  ++G A  +     DP  +
Sbjct: 192 HTSAGSVSQRSDYNGFDLSADRANVVRQILEREGLPVSHIFAVTGKADTQPLFPEDPSIA 251

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 252 ANRRVTI 258


>gi|229588064|ref|YP_002870183.1| flagellar motor protein MotB [Pseudomonas fluorescens SBW25]
 gi|229359930|emb|CAY46784.1| chemotaxis MotB protein [Pseudomonas fluorescens SBW25]
          Length = 339

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           + FE T  G+ I I D  N PMFD  S+   P    +L  + + +      ISI GHTDA
Sbjct: 145 ISFEITPDGLRIQITDAANRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+       NW LS +RA +A + L+     + +++++ GFA  +L    DP N  NRR
Sbjct: 205 KPYAGQGDFGNWELSANRANAARRALVAGSYPDPQVARVVGFASSQLFDHKDPFNPINRR 264

Query: 334 IDILV 338
           IDI+V
Sbjct: 265 IDIVV 269



 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 6/67 (8%)

Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          EN+Q IIIK  K+ A     ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  
Sbjct: 2  ENNQPIIIKRVKRFAAG---HHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAG 58

Query: 68 YF-NPFG 73
          YF +P G
Sbjct: 59 YFKDPIG 65


>gi|284007193|emb|CBA72482.1| flagellar motor protein MotB [Arsenophonus nasoniae]
          Length = 320

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 193 QDLAKKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           QD  KK+   L  L+ ++     +   +L +    G+ I IID  N PMF   S++    
Sbjct: 110 QDRFKKLQQDLELLIMNDPRLQDLKPNLLIDLMDEGLQIQIIDGENRPMFASGSAVIDKN 169

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  +  VL      IS+ GHTD++ +        NW LS DRA S+ + L+  G+ 
Sbjct: 170 MQKILHVLAPVLNDYPNKISLAGHTDSTAYAKGGYGYSNWELSADRANSSRRTLISGGLD 229

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E +I ++ G A   + + ++P  +ANRRI ILV +++
Sbjct: 230 EHKIMRVVGMA-STVPLENNPAAAANRRISILVLNKE 265



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADFMT +MAFFLVMWI++ +       I  YF
Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWILSISSPQELIRIADYF 62


>gi|197285528|ref|YP_002151400.1| motility protein B [Proteus mirabilis HI4320]
 gi|227356023|ref|ZP_03840414.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906]
 gi|194683015|emb|CAR43481.1| chemotaxis protein (motility protein B) [Proteus mirabilis HI4320]
 gi|227163800|gb|EEI48708.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906]
          Length = 349

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I IID+ + PMF   S+   P    +L  I  +L  S   IS+ GHTD 
Sbjct: 136 LLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIAPILNDSPYKISLSGHTDD 195

Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ + A    NW LS DRA ++ + L+ +G++E ++ ++ G A     +  D    ANR
Sbjct: 196 IPYASGALKYSNWELSTDRANASRRELIGAGLAEWKVLRVVGMASTVHLVKEDGFAPANR 255

Query: 333 RIDILVEDRQ 342
           RI ILV  +Q
Sbjct: 256 RISILVLTKQ 265



 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 5/121 (4%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N Q I +KK+        + G+WKI YADFMT +MAFFLVMW+++         + +YF 
Sbjct: 4   NSQIIRVKKRGKKQHNAQH-GAWKIAYADFMTAMMAFFLVMWLLSIASPQELTRVAEYFR 62

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +   +   D  NP     ++ +    D  +    V+ K    N+K+Q+++L+ N
Sbjct: 63  TPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGD--VLPKGVEDK--QLNEKQQFRKLKEN 118

Query: 131 I 131
           +
Sbjct: 119 L 119


>gi|218460723|ref|ZP_03500814.1| flagellar motor protein MotB [Rhizobium etli Kim 5]
          Length = 72

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNP 71
          K A+  YFNP
Sbjct: 62 KAAVATYFNP 71


>gi|322832491|ref|YP_004212518.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321167692|gb|ADW73391.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 367

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++   T  G+ I IID +N PMF   S+I  P    +L+ I  VL      IS+ GHTD 
Sbjct: 139 LMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIAPVLDGFPNKISLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+    R   NW LS +RA ++ + +M  G+SE ++ ++ G     +++ + P   A N
Sbjct: 199 MPYATGERGYSNWELSTERANASRREMMSGGLSEGKVLRVMGMGSS-MQLKNHPAGDAIN 257

Query: 332 RRIDILV 338
           RRI ILV
Sbjct: 258 RRISILV 264



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          SWKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 26 SWKIAYADFMTAMMAFFLVMWLISISSPKELVQIAEYF 63


>gi|78063638|ref|YP_373546.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77971523|gb|ABB12902.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 318

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           LS  Q ++  + S+ +    G+D+   +D   +I+ +    +P  S   +  +   ++L+
Sbjct: 80  LSGGQDAQAPRPSVVQGG--GRDM---SDPTPAIDTKAQP-VPASSPAALAGIVDTQKLE 133

Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            L  K+++ ++   +    +  +    T  G+ I I+D    PMF   SS P      +L
Sbjct: 134 RLKAKLTAAIAQSPSLRAYQDQIRIAITNEGLRIEIVDSLKRPMFASGSSQPESYATAIL 193

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            +IG  L      +SI GHTD++P+ +      NW LS DRA +A + L+  G+ ED++ 
Sbjct: 194 SQIGTALDDVENRVSIAGHTDSTPYPDGSTGYSNWELSSDRANAARRALVAGGLREDKLL 253

Query: 311 KISGFAHHRL---KIASDPMNSANRRIDILV 338
           ++ G A        +A +P    NRRI ILV
Sbjct: 254 QVRGLADVLPLDKNVADEPT---NRRISILV 281



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
           +++++K   D   ++ G+WKI YADF+T +MAFFL+MW++ +     K+ IE YFN   
Sbjct: 17 LVVVRRKKGEDHDAHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSKYDKQGIEDYFN--- 73

Query: 74 KNLMTASKGIFDEQNP 89
            L T   G  D Q P
Sbjct: 74 TPLSTLLSGGQDAQAP 89


>gi|86749921|ref|YP_486417.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86572949|gb|ABD07506.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 274

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+FE T TG+ + + DQ   PMF   SS+P   T +++ K+   L  ++  ++I G
Sbjct: 133 LSKNVVFEETPTGLNLELTDQDGRPMFADGSSVPYERTRLLIAKLAAPLRATSLRVNIVG 192

Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HT A+    N   D++ LS  RA +  Q+L + G+S +R+  ++G           PM +
Sbjct: 193 HTAATAVPANGDYDSFDLSTGRANAVRQILKREGLSSNRVMSVAGKGDGEPLFPEAPMLA 252

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 253 ANRRVTI 259


>gi|115524590|ref|YP_781501.1| OmpA/MotB [Rhodopseudomonas palustris BisA53]
 gi|115518537|gb|ABJ06521.1| OmpA/MotB [Rhodopseudomonas palustris BisA53]
          Length = 280

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+FE T+ G+ + I+DQ   PMF + S +P   T ++++++   L  ++  I++ G
Sbjct: 139 VSKNVMFEETKEGLNLQIVDQDGRPMFPEGSPVPFQRTKLLIERLAAPLRATSLRITLVG 198

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT ++  P R+ A D + LS  RA +  Q+L + G+    +  ++G A        DPM 
Sbjct: 199 HTSSAVLPGRSDA-DGFDLSWQRANAVRQILKREGLPIANVLSVTGKADSEPLFPDDPML 257

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 258 AANRRVTI 265


>gi|296282270|ref|ZP_06860268.1| OmpA/MotB domain-containing protein [Citromicrobium bathyomarinum
           JL354]
          Length = 273

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP---- 71
           II KKV + +  ++ G+WK+ YADF+T +MAFFL+MW++ AT +D ++ +  YF P    
Sbjct: 12  IIVKKVTVVEGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEDQRRGLADYFTPTLVK 71

Query: 72  -----FGKNLMTASKGIFDEQNPPERSSQ 95
                 G N + +   + D  + P R  Q
Sbjct: 72  VKDSGAGANGLLSGASLTDVDDYPNRQGQ 100



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+ I ++D  +  MF+  +++   +   +L  I + +      I +RGHTD+  ++N
Sbjct: 152 TTEGVRIDLVDDADFSMFNLGTTVLTRDAAELLAAIAQAIEPEKREIIVRGHTDSLKWKN 211

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             R +NW LS  RA +  Q LM  G+ +D   +I G A   L +  DP +  NRRI I++
Sbjct: 212 PGRINNWSLSAGRAEATRQTLMNEGIPDDSFRRIEGVADTELLVKDDPADPRNRRISIVL 271


>gi|188592087|ref|YP_001796685.1| flagellar motor protein motb [Cupriavidus taiwanensis LMG 19424]
 gi|170938461|emb|CAP63448.1| Chemotaxis protein MotB; Flagellar motor rotation, linking torque
           machinery to cell wall [Cupriavidus taiwanensis LMG
           19424]
          Length = 321

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D +N PMF   S+        +L++IG VL      +S+ GHTDA
Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGSATVESYMRTILREIGPVLNELPNKVSLSGHTDA 204

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           + + N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A        D +   NR
Sbjct: 205 ANYSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKQDLLAPVNR 264

Query: 333 RIDILV 338
           RI I+V
Sbjct: 265 RISIVV 270



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +D   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T + I +YF
Sbjct: 5  HDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63


>gi|187920655|ref|YP_001889687.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187719093|gb|ACD20316.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 329

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 19/195 (9%)

Query: 154 GKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           G+D+   +D   ++ K+ ++   PP      +A     RL+ L  K+++ +       I+
Sbjct: 99  GRDI---SDTRPAVGKKSQSEPTPPAVTTPSVAPSDATRLEQLKAKLTALIE---QSPIL 152

Query: 213 KG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           K     +    T  G+ I I+D +N PMF   SS   P  + +L +IG  L      +SI
Sbjct: 153 KAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQPYAVTILTQIGAALNDVDNRVSI 212

Query: 269 RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA---HHRLKIA 323
            GHTDA P+        NW LS +RA +A + L+  G+  +++ ++ G A       ++A
Sbjct: 213 AGHTDAVPYTAGPEGYSNWELSSERANAARRSLVAGGMHGEKLLQVRGLADVLPLNSQVA 272

Query: 324 SDPMNSANRRIDILV 338
            +P    NRRI ILV
Sbjct: 273 DEPT---NRRISILV 284



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
          WKI YADF+T +MAFFL+MW++ +T    K+ IE YFN    +L+  ++G
Sbjct: 37 WKIAYADFVTAMMAFFLLMWLLGSTSKFDKQGIEDYFNTPLSSLLGGNEG 86


>gi|114799250|ref|YP_759621.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444]
 gi|114739424|gb|ABI77549.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444]
          Length = 226

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
           TG+ I ++D    P+F+  S     +   ++Q     L+     +SI GHTDA      A
Sbjct: 106 TGVRIELVDTAGRPLFETGSGALTADGAALIQAAAMSLSGLPYALSIEGHTDAFSMTGAA 165

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             NW LS  RA  A + L  +G   DR+  ++G+A  R   A  P  +ANRRI + V
Sbjct: 166 SSNWELSSQRANEARRALEMAGFGTDRVKAVTGYADTRPLNAGQPHLAANRRISLQV 222



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          G+WK+ YADF+T L+AFF++MW+++    + +  I   F   GK + TA
Sbjct: 23 GTWKLAYADFLTALVAFFMLMWLVSGVSKEDRAVIASEFT--GKPVSTA 69


>gi|90423604|ref|YP_531974.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90105618|gb|ABD87655.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 275

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + IIDQ    MF   S +P   T +++QK+   L  +   +SI G
Sbjct: 134 LSKNIMFEETKEGLNLEIIDQDGRSMFADGSKVPFERTRLLIQKLAAPLRATPLRVSIVG 193

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT A   P R    + + LS DRA +  Q+L + G+    +  +SG A  +     DPM 
Sbjct: 194 HTSAGLMPGRT-DYNAFDLSSDRANAVRQILEREGLPTSHVFAVSGKADSQPLFPDDPML 252

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 253 AANRRVTI 260


>gi|255264513|ref|ZP_05343855.1| OmpA/MotB [Thalassiobium sp. R2A62]
 gi|255106848|gb|EET49522.1| OmpA/MotB [Thalassiobium sp. R2A62]
          Length = 272

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          IIIK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT ++ +K I  YF+P
Sbjct: 9  IIIKRKKVVSGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTENQRKGIADYFSP 65



 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 201 STLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           + LSG   V D +++ V+   T  G++I + D  + P+F  +S +P      +   I ++
Sbjct: 125 TALSGESAVIDRMLRHVITRVTDEGLIIELFDLEDQPLFIDASDVPTGVMQDLTAMIAQI 184

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +   +  +++ GH  + P   +   NW +S  RA +   +L ++G    ++++++  AH 
Sbjct: 185 VGFVSNDLAVEGHVRSQPIVLLKNQNWEISHSRAQAIRLLLQQNGAYPQQMNRVT--AHG 242

Query: 319 -RLKIASDPMNSANRRIDILV 338
            R     +P++  N RI+I+V
Sbjct: 243 DREPQYKNPLSVRNNRIEIIV 263


>gi|146305234|ref|YP_001185699.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145573435|gb|ABP82967.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 313

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-- 280
           G+ I I D     MF + S+   P    +LQ++  +LA     + I GHTD++P+R +  
Sbjct: 162 GLRILIKDDAQRFMFSRGSARLDPHFEKLLQRLAGILAKVDNHLIISGHTDSTPYRGVVG 221

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +NW LS DRA  A  VL+++G+    + +++  A     + SDP N ANRRI++L+
Sbjct: 222 GYNNWNLSGDRALRARNVLVEAGLPTSAVLQVTAQADGMPLLPSDPQNGANRRIELLL 279



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G +  E    II+K++        + G+WK+ +ADF   +MA F+V+WII   +  
Sbjct: 1   MRKRGGEEHE----IIVKRRSKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQNQQ 56

Query: 61  TKKA-IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
             +A  +Q  NP    L+    GIFD       SS+  +DL
Sbjct: 57  QSRADADQLTNP----LVEGGAGIFDG------SSRTPLDL 87


>gi|309778972|ref|ZP_07673742.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308922319|gb|EFP67946.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 13/131 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTTEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGSALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330
           + +       NW LS DRA ++ + L+  G+  +++S++ G        AS P++ A   
Sbjct: 204 TQYATQHGYSNWELSADRANASRRELVAGGMKPEKVSRVVGLE------ASVPLDKANIY 257

Query: 331 ---NRRIDILV 338
              NRRI I+V
Sbjct: 258 NPINRRISIVV 268



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|116694193|ref|YP_728404.1| flagellar motor protein MotB [Ralstonia eutropha H16]
 gi|113528692|emb|CAJ95039.1| Chemotaxis protein [Ralstonia eutropha H16]
          Length = 321

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D +N PMF   S+        +L++IG VL      +S+ GHTDA
Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGSATVETYMRTILREIGPVLNELPNKVSLSGHTDA 204

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           + + N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A        D +   NR
Sbjct: 205 ANYSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKEDLLAPVNR 264

Query: 333 RIDILV 338
           RI I+V
Sbjct: 265 RISIVV 270



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +D   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T + I +YF
Sbjct: 5  HDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63


>gi|315180456|gb|ADT87370.1| chemotaxis LafU protein [Vibrio furnissii NCTC 11218]
          Length = 324

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I I D    PMF++  S   P    +L  +  V +     I + GHTDAS F
Sbjct: 139 QITPQGLKIIISDSDKGPMFNRGGSSMTPYYQDLLLNLAPVFSRVENAIIVTGHTDASRF 198

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           R  +  NW LS +RA SA   L   GV   +I ++SG A     +  +P +  NRRI+I 
Sbjct: 199 RGTSMTNWELSSNRANSARYFLNSGGVPRAQIFQVSGMAESAPLLPENPKSGQNRRIEIF 258

Query: 338 V 338
           +
Sbjct: 259 L 259



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          D   IIKKK     +  + G WK+  AD M  + A FL++W++   DD+    + QYF
Sbjct: 4  DGVTIIKKKKRGGHSGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61


>gi|146278768|ref|YP_001168927.1| flagellar motor protein-like protein [Rhodobacter sphaeroides
          ATCC 17025]
 gi|145557009|gb|ABP71622.1| Flagellar motor protein-like protein [Rhodobacter sphaeroides
          ATCC 17025]
          Length = 278

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query: 8  NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  
Sbjct: 3  GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLAD 62

Query: 68 YFNP 71
          YFNP
Sbjct: 63 YFNP 66



 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           A + + RL+++ K + + T   +  + +++ ++   T  G++I I D  + P+F   +  
Sbjct: 120 AAEEQARLEEVEKLLKARTGESMTMERLLRHIVTRITDEGLVIEIFDLPDVPLFLGDTDQ 179

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P P    + + + EVL  +T  I++ GH  + P   I    W LS  RA    +++  +G
Sbjct: 180 PEPILPQIARLLAEVLPITTNRIAVSGHVRSYPITLIRNPAWDLSALRAQRMRELIESAG 239

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  +R  +ISGFA  R     DPM   N R+++++
Sbjct: 240 LPGERTQRISGFA-DRKPATPDPMAVRNNRLEVIL 273


>gi|260431755|ref|ZP_05785726.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415583|gb|EEX08842.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157]
          Length = 279

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          Q N   IIIKKK       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 4  QTNAAPIIIKKKRTSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 63

Query: 69 FNP 71
          F+P
Sbjct: 64 FSP 66



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 199 ISSTLSGLVADNIV-----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + +TL G   +++V     K ++   T  G+++ + D  + P+F+  +  P      ++ 
Sbjct: 132 LEATLLGRAGESMVSKKALKHIVTRVTDKGLVVELFDTDDEPLFEPGTDNPTQLMRALVL 191

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            +       T  I++ GH  +SP        W LS  RA    Q+L   GV   R+++++
Sbjct: 192 FVARSSDLVTNAIAVEGHVKSSPLVVAHNPAWELSTSRAQVIRQLLQDKGVRPSRLNRVT 251

Query: 314 GFAHHRLKIASDPMNSANRRIDIL 337
           G A  +L +  +PM + N RI+I+
Sbjct: 252 GHADRKLAV-ENPMAARNDRIEII 274


>gi|238751745|ref|ZP_04613233.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380]
 gi|238710016|gb|EEQ02246.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380]
          Length = 339

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N  R
Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGER 171

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK   A DP+   NRRI IL
Sbjct: 172 GYSNWELSADRANASRRELLIGGLDEGKVLRVIGMASTMRLKEQAADDPV---NRRISIL 228

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 229 VLNKQ 233


>gi|73539429|ref|YP_299796.1| flagellar motor protein MotB [Ralstonia eutropha JMP134]
 gi|72122766|gb|AAZ64952.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 325

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D +N PMF    +   P    +L++IG V+      +S+ GHTD+
Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGRAEVEPYMRAILREIGPVINDLPNKVSLSGHTDS 204

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           + + N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A       SD +   NR
Sbjct: 205 ANYSNGERTYSNWELSSDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKSDLLAPVNR 264

Query: 333 RIDILV 338
           RI I+V
Sbjct: 265 RISIVV 270



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          ND   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T + I +YF
Sbjct: 5  NDMRPIIVRRAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63


>gi|260768753|ref|ZP_05877687.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260616783|gb|EEX41968.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 324

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I I D    PMF++  S   P    +L  +  V +     I + GHTDAS F
Sbjct: 139 QITPQGLKIIISDSDKGPMFNRGGSSMTPYYQDLLLNLAPVFSRVENAIIVTGHTDASRF 198

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           R  +  NW LS +RA SA   L   GV   +I ++SG A     +  +P +  NRRI+I 
Sbjct: 199 RGTSMTNWELSSNRANSARYFLNSGGVPRAQIFQVSGMAESAPLLPENPKSGQNRRIEIF 258

Query: 338 V 338
           +
Sbjct: 259 L 259



 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          D   IIKKK        + G WK+  AD M  + A FL++W++   DD+    + QYF
Sbjct: 4  DGVTIIKKKKRGGHGGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61


>gi|187926231|ref|YP_001892576.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|241665719|ref|YP_002984078.1| flagellar motor protein MotB [Ralstonia pickettii 12D]
 gi|187727985|gb|ACD29149.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|240867746|gb|ACS65406.1| OmpA/MotB domain protein [Ralstonia pickettii 12D]
          Length = 315

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 144 LLIDMTTEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGTALNDVPNPISLSGHTDA 203

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  +++S++ G         ++  N  NRR
Sbjct: 204 TQYATQHGYSNWELSADRANASRRELVAGGMKPEKVSRVVGLEASVPLDKTNIYNPINRR 263

Query: 334 IDILV 338
           I I+V
Sbjct: 264 ISIVV 268



 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WKI YADF+T +MAFFL+MW++++       ++E YF
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63


>gi|120555689|ref|YP_960040.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120325538|gb|ABM19853.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 319

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+D+   PMFD         +  +L ++ + L      ISI GHTDA
Sbjct: 138 LLLDITDEGLRIQIVDRSGRPMFDSGRDELKYYSQDILFELAKKLGSVDNKISITGHTDA 197

Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +PF       NW LS DRA +A + L+  GV  ++I+++ G +   L    +P    NRR
Sbjct: 198 TPFSGRPGYTNWELSADRANTARRALVAGGVRLEQIARVVGLSDSVLFDKDNPTAPVNRR 257

Query: 334 IDILV 338
           I I+V
Sbjct: 258 ISIIV 262



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-N 70
          +Q IIIK+K  +    ++ GSWK+ +ADF T +MAFFLV+W+      + K A+E YF +
Sbjct: 3  EQPIIIKRKKKVVGG-HHGGSWKVAFADFATAMMAFFLVLWLTATATPEQKLAVEGYFKD 61

Query: 71 PFG 73
          P G
Sbjct: 62 PVG 64


>gi|332284002|ref|YP_004415913.1| chemotaxis protein [Pusillimonas sp. T7-7]
 gi|330427955|gb|AEC19289.1| chemotaxis protein [Pusillimonas sp. T7-7]
          Length = 310

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I IID++N PMF   S+        +L+++G         +SI GHTD+
Sbjct: 138 LLLDMTPDGLRIQIIDKQNRPMFATGSAQVQSYMRDILRQLGPTFNRLPNPLSISGHTDS 197

Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
             + +  RD  NW LS DRA +A + L+  G+ E ++ ++ G +     I  +P  + NR
Sbjct: 198 IQYASGERDYSNWELSADRANAARRELVAGGMGESKVKRVLGLSSSVSLIKDNPAAAVNR 257

Query: 333 RIDILV 338
           RI I+V
Sbjct: 258 RISIVV 263



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 8  NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          N++  + +I +K+  +    N+  SWKI YADF+T +MAFFLVMW++        + + +
Sbjct: 2  NKQEPRIVIRRKRSHVSVKHND--SWKIAYADFVTAMMAFFLVMWLVALVPQKDLQEMAE 59

Query: 68 YFNPFGKNLMTASKG 82
          YF      LMTA KG
Sbjct: 60 YFR---MPLMTAVKG 71


>gi|254512283|ref|ZP_05124350.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11]
 gi|221535994|gb|EEE38982.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11]
          Length = 279

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          Q N   IIIKKK       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 4  QTNVAPIIIKKKRVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTETQRKGLADY 63

Query: 69 FNP 71
          F+P
Sbjct: 64 FSP 66



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 13/148 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A+ +  T   LV+D ++K ++   T  G+++ +    + P+F+  S  P      +++ +
Sbjct: 134 AQLLGRTGESLVSDEMLKHIVTRVTDEGLVVELFSTEDQPLFESGSDKP----TQMMRAL 189

Query: 256 GEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             ++A S+++    I++ GH  ++P        W LS  RA    Q+L   GV   R+ +
Sbjct: 190 TLLVARSSDLVTNSIAVEGHVRSAPVVLAHNPTWDLSTTRAQITRQLLQNKGVQPQRLVR 249

Query: 312 ISGFA--HHRLKIASDPMNSANRRIDIL 337
           ++G A   H L+   +PM   N R++I+
Sbjct: 250 VAGHADREHALE---NPMAVRNDRVEII 274


>gi|238785460|ref|ZP_04629444.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC
           43970]
 gi|238713615|gb|EEQ05643.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC
           43970]
          Length = 380

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 104 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 163

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330
            P+ N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK  ASD  +  
Sbjct: 164 LPYANGERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASD--DPV 221

Query: 331 NRRIDILVEDRQ 342
           NRRI ILV ++Q
Sbjct: 222 NRRISILVLNKQ 233


>gi|183598599|ref|ZP_02960092.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827]
 gi|188020776|gb|EDU58816.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827]
          Length = 317

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I I+D  N PMF   S+   P    +L+ I  +L      ISI GHTD 
Sbjct: 137 LLIDMIDDGLRIQIVDSENRPMFMVGSAYVEPHMRDILRAIAPLLNDVPNKISISGHTDD 196

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+ N A  +NW LS DRA ++ + L+  G+++D+I ++ G A       ++ +   NRR
Sbjct: 197 LPYANGANYNNWELSADRANASRRELIAGGLNQDKILRVVGMASSIHLDKNNGLAPVNRR 256

Query: 334 IDILV 338
           I I+V
Sbjct: 257 ISIIV 261



 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   I +KK+VA     +  GSWKI YADFMT +MAFFLVMW+I+ +       I +YF 
Sbjct: 5  NAHIIRVKKRVASHQNGHG-GSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63

Query: 71 PFGKNLMTASKGIFDEQNP 89
             K  + +     D  NP
Sbjct: 64 TPLKTAINSGTKSGDATNP 82


>gi|238782805|ref|ZP_04626834.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970]
 gi|238716228|gb|EEQ08211.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970]
          Length = 296

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR- 278
           T  G+LI +ID +  PMF   S    P    +LQ +  VL      IS+ GHTD+ P+  
Sbjct: 110 TEDGLLIQVIDSQERPMFKVGSKELEPYMRGILQALVPVLNDLPNKISLTGHTDSLPYAR 169

Query: 279 -NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             +   NW LS DRA ++ Q L+  G++E++  ++ G A+        P +  NRRI IL
Sbjct: 170 GEVGYSNWELSADRANASRQTLVAGGLAENKFLRVIGTANMMNLENVRPDDPINRRISIL 229

Query: 338 V 338
           V
Sbjct: 230 V 230



 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          MT +MAFFLVMW+++++    ++ I  YF
Sbjct: 1  MTAMMAFFLVMWLLSSSTPLQREQIADYF 29


>gi|218516717|ref|ZP_03513557.1| flagellar motor protein MotB [Rhizobium etli 8C-3]
          Length = 89

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2  NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
          N H  +N+     II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++T
Sbjct: 6  NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61

Query: 62 KKAIEQYFNP 71
          K A+  YFNP
Sbjct: 62 KAAVATYFNP 71


>gi|27378912|ref|NP_770441.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110]
 gi|27352062|dbj|BAC49066.1| pomB [Bradyrhizobium japonicum USDA 110]
          Length = 276

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 120/308 (38%), Gaps = 64/308 (20%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M ++M+FF+++   +  D +  K +     + FG        GI +    P
Sbjct: 15  GWFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQSEARYAGIVESDGLP 74

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            R     +D     HI                                Q E   N+ T D
Sbjct: 75  TRPRLKNVD-----HI--------------------------------QPEDASNTPTPD 97

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
            E  +D          I  + N+ L         A   ++ LQD+ +             
Sbjct: 98  QED-RDRTSGA----KIKVDRNFAL--------AAASLRQALQDMPELT----------E 134

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF   S +P   T  +++K+   L  +   +SI G
Sbjct: 135 MSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLVEKLAIPLKATPLRVSIAG 194

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT A   P R+     + LS DRA +  Q+L + G+    I  +SG A  +     DP  
Sbjct: 195 HTAAGFVPTRS-DYGAFDLSADRANAVRQILEREGLPASHIFAVSGKADTQPLFPDDPSL 253

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 254 AANRRVTI 261


>gi|330821029|ref|YP_004349891.1| OmpA/MotB [Burkholderia gladioli BSR3]
 gi|327373024|gb|AEA64379.1| OmpA/MotB [Burkholderia gladioli BSR3]
          Length = 307

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +   TTR G+ I I+D R+ PMF   S+        +L +IG +L      +SI GHTDA
Sbjct: 154 IRLSTTREGLRIEIVDSRSRPMFATGSARLEDYASDILFRIGTLLNQVDNRVSIAGHTDA 213

Query: 275 SPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-AN 331
            P+        NW LS DRA +A + L+   + ED++ +I G A   L +     ++  N
Sbjct: 214 VPYSGGIAGYSNWELSSDRANAARRALVAGHLREDKLLQIRGLA-DVLPLDQGAADAEVN 272

Query: 332 RRIDILVEDRQ 342
           RRI ILV ++Q
Sbjct: 273 RRISILVLNKQ 283



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
          G+WKI YADF+T +MAFFL+MW++ +T    +K IE YFN     L+    G   + N  
Sbjct: 35 GAWKIAYADFVTAMMAFFLLMWLLGSTSKYDRKGIEDYFNTPLSTLL----GTHADSNGT 90

Query: 91 ERSS 94
           RSS
Sbjct: 91 ARSS 94


>gi|238795043|ref|ZP_04638637.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC
           29909]
 gi|238725644|gb|EEQ17204.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC
           29909]
          Length = 388

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 129 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 188

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNS 329
            P+ N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK     DP+  
Sbjct: 189 LPYANGERGYSNWELSADRANASRRELLVGGLDEGKVLRVVGMASTMRLKEQPGDDPV-- 246

Query: 330 ANRRIDILVEDRQ 342
            NRRI ILV ++Q
Sbjct: 247 -NRRISILVLNKQ 258



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +++K+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +YF
Sbjct: 1  MVRKRKAKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQQLTQIAEYF 54


>gi|307726280|ref|YP_003909493.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307586805|gb|ADN60202.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 330

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 15/174 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           P++    +A     RLQ L +K+ S +    A    K  +    T  G+ I I+D +N P
Sbjct: 121 PVNVVPTVAPADAARLQQLKEKLVSLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRP 180

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293
           MF   S       + +L +IG  L      ISI GHTDA P+    +   NW LS +RA 
Sbjct: 181 MFASGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERAN 240

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341
           +A + L+  G+  +++ ++ G A         P+NS       NRRI ILV ++
Sbjct: 241 AARRALVAGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 288



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 3  SHGDKNQENDQ--FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          S G + QE      I+ + K   D   ++ G+WKI YADF+T +MAFFL+MW++ +T   
Sbjct: 6  SRGSQEQEAPPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKF 65

Query: 61 TKKAIEQYFNPFGKNLMTASKG 82
           K+ IE YFN    +L+  S+G
Sbjct: 66 DKQGIEDYFNTPLSSLLGGSQG 87


>gi|316934820|ref|YP_004109802.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315602534|gb|ADU45069.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 273

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 68/309 (22%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M +L+AFF+++   +  D    K +       FG        GI +    P
Sbjct: 14  GWFVTFADLMALLLAFFVMLVAFSTQDTQKLKIVAGSMREAFGVQSDARYSGIIENDGLP 73

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            R           EH+                           LS ++ S      +TRD
Sbjct: 74  TRGKVKNT-----EHVNPE------------------------LSTAKPS---PGEVTRD 101

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVAD 209
                         + IN +E+       +E  LA    ++ LQ++ +         +A+
Sbjct: 102 --------------EGINTKED-------REFALASASLRQALQNMPE---------IAE 131

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            + K ++FE T+ G+ + I+DQ    MF   S +P   T ++LQ++   L  +   ISI 
Sbjct: 132 -LSKNIMFEETKQGLNLEIMDQDGRSMFADGSRVPFERTRLLLQRLAVPLRATPLRISIV 190

Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHT +   P R+   + W LS DRA S  Q+L + G+    I  ++G +  +     DP 
Sbjct: 191 GHTSSGLLPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKSDSQPLFPEDPS 249

Query: 328 NSANRRIDI 336
            +ANRR+ I
Sbjct: 250 IAANRRVTI 258


>gi|86750474|ref|YP_486970.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86573502|gb|ABD08059.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 273

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 117/308 (37%), Gaps = 66/308 (21%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M +L+AFF+++   +  D D  K +       FG        GI +    P
Sbjct: 14  GWFVTFADLMALLLAFFVMLTAFSTQDKDKLKVVAGSMREAFGVQSDARYSGIIENDGLP 73

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            R               KN+                              EH    L+  
Sbjct: 74  TRGK------------VKNT------------------------------EHVNPELSTA 91

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                ++ K   +     KEE  F        + +   ++ LQD+  +IS          
Sbjct: 92  KPSPGEVSKDEGIH---TKEEREF-------ALASASLRQALQDM-PEIS---------E 131

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+FE T+ G+ + I+DQ    MF   S  P   T  +LQ +   L  +   I+I G
Sbjct: 132 LSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRRLLQSLAGPLRATPLRITIAG 191

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT A   P R+   + + LS DRA +  Q+L + GV       ++G +  +     DP  
Sbjct: 192 HTSAGLMPARS-DYNGFDLSADRANAVRQILEREGVPTSHFFAVTGRSDTQPLFPEDPAI 250

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 251 AANRRVTI 258


>gi|13446371|gb|AAK20927.1| LafU [Aeromonas hydrophila]
          Length = 315

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           R G+ I I D     M+ + S+   P    +L  +  +       + I GHTD++PF   
Sbjct: 165 RKGLRILIRDDDEREMYSRGSARISPFFRHMLMALAPIFQRVENRVMISGHTDSTPFAGD 224

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              NW LS DRA  A +VL+  G+  +R+ +++  +   L+  +DP  S NRRI++LV
Sbjct: 225 NYSNWELSSDRAMMARRVLLAGGMPPERVGQVAAMSDTMLENTADPRGSQNRRIELLV 282



 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N + IIIK++   +  P   G+ K+ +ADF   +MAFF+V+WI+  +  + ++ + +   
Sbjct: 3  NHEQIIIKRQQRRNSAPKGGGACKVAFADFTLAMMAFFMVLWILAVSSQEEREVVARRLR 62

Query: 71 PFGKNLMTASKGIFDEQNPP 90
           +  ++M +    FD +N P
Sbjct: 63 DY--SIMDSEANPFDIRNSP 80


>gi|218548503|ref|YP_002382294.1| flagellar motor protein MotB [Escherichia fergusonii ATCC 35469]
 gi|218356044|emb|CAQ88660.1| protein that enables flagellar motor rotation [Escherichia
           fergusonii ATCC 35469]
 gi|324113675|gb|EGC07650.1| OmpA family protein [Escherichia fergusonii B253]
 gi|325496923|gb|EGC94782.1| flagellar motor protein MotB [Escherichia fergusonii ECD227]
          Length = 304

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDMVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLAGHTDDYP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333
           + N  R   NW LS DRA ++ + LM  G+ E ++ ++ G A   ++++    N A NRR
Sbjct: 202 YANGERGYSNWELSADRANASRRELMVGGLEEGKLLRVVGMAAT-MRLSDRGGNDAINRR 260

Query: 334 IDILVEDRQ 342
           I +LV ++Q
Sbjct: 261 ISLLVLNKQ 269



 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%)

Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
           I++K++   +      GSWKI YADFMT +MAFFLVMW+I+ +       I +YF    
Sbjct: 8  IIVVKRRKPKNHGGAGHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 67

Query: 74 KNLMTASKGIFDEQNP 89
             +T    I + Q+P
Sbjct: 68 ATAITGGDRISNSQSP 83


>gi|254463728|ref|ZP_05077139.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206684636|gb|EDZ45118.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 282

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          Q N   IIIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 8  QSNVAPIIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 67

Query: 69 FNP 71
          F+P
Sbjct: 68 FSP 70



 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 189 KKRLQDLAK--KISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           +KR +D +K   I   LSG     +V+  + + ++   T  G++I +    + P+F++  
Sbjct: 124 EKREEDDSKFRAIEEQLSGRGGESMVSVAMARHIVTRVTDEGLIIELFATEDMPLFEEDQ 183

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           + P P    +++ I  V    T  ++I GH  + P        W LS  RA     +L  
Sbjct: 184 AEPKPLFRDLVRMIARVSDGVTSNVAIGGHIRSHPVVLAKNPVWELSHARADITRTLLES 243

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            G+   R+ +++G A  +L +  +PM + N RI+I+
Sbjct: 244 GGLDAGRVHRVTGHADRKLAVG-NPMAARNDRIEII 278


>gi|85058002|ref|YP_453704.1| flagellar motor protein MotB [Sodalis glossinidius str.
           'morsitans']
 gi|84778522|dbj|BAE73299.1| chemotaxis protein MotB [Sodalis glossinidius str. 'morsitans']
          Length = 341

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +  PMF    +   P    +L+ I  VL +    IS+ GHTD  P+ N  R
Sbjct: 141 GLRIEIIDSKKRPMFATGGTAIAPYMRSILRIIAPVLDNLPNRISLAGHTDNQPYLNGER 200

Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + L++ G++ D+I ++ G A+          N+A RRI I++  
Sbjct: 201 GYGNWELSTDRANASRRELVEGGLAGDKILRVIGMANTMAPAGKVDDNAAQRRISIVILT 260

Query: 341 RQ 342
           R+
Sbjct: 261 RE 262



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
           +GSWKI YADFMT +MAFF+VMW++ AT    ++ I  YF    K  +T   G F+  N 
Sbjct: 22  VGSWKIAYADFMTAMMAFFMVMWMLGATTPQQREQIADYFKMPLKEALT-HNGKFNMGN- 79

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   I L +D   T     L+      ++  QRL+N
Sbjct: 80  --------IPLPVDAKDTDGLTRLRQRELEHQRDIQRLKN 111


>gi|238795648|ref|ZP_04639162.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC
           43969]
 gi|238720374|gb|EEQ12176.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC
           43969]
          Length = 385

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 104 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 163

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330
            P+ N  R   NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK  ASD  +  
Sbjct: 164 LPYANGERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASD--DPV 221

Query: 331 NRRIDILVEDRQ 342
           NRRI ILV ++Q
Sbjct: 222 NRRISILVLNKQ 233


>gi|209885628|ref|YP_002289485.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
 gi|209873824|gb|ACI93620.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
          Length = 275

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++K+   L  S   I+I G
Sbjct: 135 LSKHIMFEETKNGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAAPLRQSPLRIAIVG 194

Query: 271 HTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HT A+ P R    D + LS DRA +  Q+L   G+    I  +SG A        DP  S
Sbjct: 195 HTSANVPLRP-GYDAFDLSADRANAVRQILQNEGLPATHIFSVSGKADTEPLFPDDPTLS 253

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 254 ANRRVTI 260


>gi|242238952|ref|YP_002987133.1| flagellar motor protein MotB [Dickeya dadantii Ech703]
 gi|242131009|gb|ACS85311.1| OmpA/MotB domain protein [Dickeya dadantii Ech703]
          Length = 377

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 3/131 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
           + +    R   NW LS DRA ++ + L+  G++E ++ ++ G A    LK A D  ++ N
Sbjct: 195 ARYATGERGYSNWELSADRANASRRELIAGGLTEGKVLRVVGMADTMNLKQAKDGSDAIN 254

Query: 332 RRIDILVEDRQ 342
           RRI ++V ++Q
Sbjct: 255 RRISLVVLNKQ 265



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF   
Sbjct: 4  QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63

Query: 73 GKNLMTASKGIFDEQNP 89
           K  +T+   + D  NP
Sbjct: 64 LKIAITSGPKMSDASNP 80


>gi|323529505|ref|YP_004231657.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323386507|gb|ADX58597.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 328

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 15/174 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           P++    +A     RLQ L +K+ S +    A    K  +    T  G+ I I+D +N P
Sbjct: 119 PVNVVPTVAPADAARLQQLKEKLISLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRP 178

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293
           MF   S       + +L +IG  L      ISI GHTDA P+    +   NW LS +RA 
Sbjct: 179 MFASGSPRLQTYAVAILTQIGAALNDVDNRISIAGHTDAVPYTGGPVGYSNWELSSERAN 238

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341
           +A + L+  G+  +++ ++ G A         P+NS       NRRI ILV ++
Sbjct: 239 AARRALVSGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 286



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%)

Query: 3  SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
          S G++ +     I+ + K A D   ++ G+WKI YADF+T +MAFFL+MW++ +T    K
Sbjct: 6  SRGEEQEVPPPIIVRRSKKADDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFDK 65

Query: 63 KAIEQYFNPFGKNLMTASKG 82
          + IE YFN    +L+  ++G
Sbjct: 66 QGIEDYFNTPLSSLLGGNEG 85


>gi|226944522|ref|YP_002799595.1| flagellar motor protein [Azotobacter vinelandii DJ]
 gi|226719449|gb|ACO78620.1| Flagellar motor protein [Azotobacter vinelandii DJ]
          Length = 306

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISII 229
           E + + P    +++  + + RL+ L ++I   LS   +   +   +L + T  G+ I ++
Sbjct: 94  ERFRIDPQLASRLVDEQERARLRQLERRIREALSINPILKELKDQILIDLTPEGLRIQLV 153

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRL 287
           D    PMF+  S+   P    +L+ +  +L      I I GHTD+ P+        NW L
Sbjct: 154 DTEQRPMFEIGSARVAPYMRTLLRTLAPMLNELPNRIQISGHTDSLPYAGGEAGYSNWEL 213

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           S DRA ++ + L+  G++ +++ + SG +         P ++ANRRI ++V D
Sbjct: 214 SADRANASRRELIAGGLALEKLLRTSGMSDRIPFEGVAPNDAANRRIAVIVLD 266



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
           III++K    +  ++ G+WKI +ADFMT LMA FLV+W++  + +  K A+ +YF  P  
Sbjct: 7   IIIRRKKRGGEG-HHGGAWKIAFADFMTALMALFLVLWMLANSGEAQKAAVAEYFRTPLV 65

Query: 74  KNLM-----TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
             LM      AS+ +     P    ++ +    ID  +    VD       ++ + ++LE
Sbjct: 66  VALMGGDREGASENVIPGGGPDPTFAEGE-RFRIDPQLASRLVD-----EQERARLRQLE 119

Query: 129 NNI 131
             I
Sbjct: 120 RRI 122


>gi|39935079|ref|NP_947355.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris
           CGA009]
 gi|192290612|ref|YP_001991217.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|39648930|emb|CAE27451.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris
           CGA009]
 gi|192284361|gb|ACF00742.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 274

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 66/308 (21%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
            W + +AD M +LM+FF+++                                        
Sbjct: 15  GWFVTFADLMGLLMSFFVMLVAF------------------------------------- 37

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN-IFYLSNSQQSEHCKNSLTRD 150
            S+Q+K  L     I   S+    G  N  +    +EN+ +      + +EH    L+  
Sbjct: 38  -STQDKAKL----MIVAGSMREAFGVQNDARYSGIIENDGLPTRGKVKNTEHVNPELSTA 92

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                ++ +    ++ IN +E+      S     A++    + +L+K I           
Sbjct: 93  KPSPGEVTR----DEGINTKEDREFALASASLRQALQNMPEISELSKNI----------- 137

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
                +FE T+ G+ + I+DQ    MF   S +P   T ++LQ++   L  +   ++I G
Sbjct: 138 -----MFEETKQGLNLEIMDQDGRSMFADGSKVPFERTRLLLQRLAVPLRATPLRVTIVG 192

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT +   P R+   + W LS DRA S  Q+L + G+    I  ++G A  +     DP  
Sbjct: 193 HTSSGLMPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKADSQPLFPDDPSI 251

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 252 AANRRVTI 259


>gi|260598378|ref|YP_003210949.1| flagellar motor protein MotB [Cronobacter turicensis z3032]
 gi|260217555|emb|CBA31774.1| Chemotaxis protein motB [Cronobacter turicensis z3032]
          Length = 310

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      +S+ GHTD  P
Sbjct: 143 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFP 202

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333
           + N  R   NW LS DRA S+ + L+  G+ + ++ ++ G A   +++A    N A NRR
Sbjct: 203 YANGERGYSNWELSADRANSSRRELVIGGLDDGKVLRVVGMAAT-MRLAEKGANEALNRR 261

Query: 334 IDILVEDRQ 342
           I +LV ++Q
Sbjct: 262 ISLLVLNKQ 270



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF 
Sbjct: 5  NHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYFR 64

Query: 71 PFGKNLMTASKGIFDEQNP 89
                +T    I D  +P
Sbjct: 65 TPLSAAITGGHRIADSDSP 83


>gi|283832712|ref|ZP_06352453.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220]
 gi|291072391|gb|EFE10500.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220]
          Length = 309

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 188 RKKRLQDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           RK+  Q   +K+   L  L+ AD  ++ +      +  + G+ I IID +N PMF   S+
Sbjct: 108 RKRMEQSRLRKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L+ I  VL      IS+ GHTD  P+ N  +   NW LS DRA ++ + L+
Sbjct: 168 EVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSNWELSADRANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 228 SGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKHKGHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + Q+P
Sbjct: 61 EYFRTPLATAVTGGNRISNSQSP 83


>gi|332161302|ref|YP_004297879.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665532|gb|ADZ42176.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 409

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ +  R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK   + DP+   NRRI IL
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPV---NRRISIL 262

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 263 VLNKQ 267



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3  HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +++ +   D  +P
Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83


>gi|261340281|ref|ZP_05968139.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317370|gb|EFC56308.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 309

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           KKR+ Q   KK+   L  L+ AD  ++ +      +  + G+ I IID +N PMF   S+
Sbjct: 108 KKRMEQARLKKVRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L+ I  VL      +S+ GHTD  P+ N  +   NW LS DRA ++ + L+
Sbjct: 168 EVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYANGEKGYSNWELSADRANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 228 AGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T  + I +  +P
Sbjct: 61 EYFRTPLATAVTGGQRISNSDSP 83


>gi|318605218|emb|CBY26716.1| flagellar motor rotation protein MotB [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 409

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ +  R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3  HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +++ +   D  +P
Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83


>gi|237731926|ref|ZP_04562407.1| flagellar motor protein MotB [Citrobacter sp. 30_2]
 gi|226907465|gb|EEH93383.1| flagellar motor protein MotB [Citrobacter sp. 30_2]
          Length = 309

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+ + ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVSGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++   +      GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + Q+P
Sbjct: 61 EYFRTPLATAVTGGNRISNSQSP 83


>gi|238788297|ref|ZP_04632091.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC
           33641]
 gi|238723543|gb|EEQ15189.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC
           33641]
          Length = 365

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+    R
Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATGER 171

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK   A DP+   NRRI IL
Sbjct: 172 GYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQTADDPV---NRRISIL 228

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 229 VLNKQ 233


>gi|238764369|ref|ZP_04625319.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC
           33638]
 gi|238697395|gb|EEP90162.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC
           33638]
          Length = 375

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ +  R
Sbjct: 109 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 168

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK   + DP+   NRRI IL
Sbjct: 169 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPV---NRRISIL 225

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 226 VLNKQ 230


>gi|123442804|ref|YP_001006781.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089765|emb|CAL12618.1| chemotaxis MotB protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 414

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ +  R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E ++ ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3  HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +++ +   D  +P
Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83


>gi|296161288|ref|ZP_06844096.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295888446|gb|EFG68256.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 9/154 (5%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL+ L  K+++ +    A    K  +    T  G+ I I+D +N PMF   SS   P   
Sbjct: 134 RLEQLKAKLTALIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQPYAE 193

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L +IG  L      ISI GHTDA P+        NW LS +RA +A + L+  G+  +
Sbjct: 194 TILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARRALVAGGMHGE 253

Query: 308 RISKISGFA---HHRLKIASDPMNSANRRIDILV 338
           ++ ++ G A        IA +P    NRRI ILV
Sbjct: 254 KLLQVRGLADVLPLNSNIADEPT---NRRISILV 284



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 2  NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          NS   + ++    +I+++ K   D   ++ G+WKI YADF+T +MAFFL+MW++ +T   
Sbjct: 5  NSRASQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64

Query: 61 TKKAIEQYFNPFGKNLMTASKG 82
           K+ IE YFN    +L+  ++G
Sbjct: 65 DKQGIEDYFNTPLSSLIGGNEG 86


>gi|283785634|ref|YP_003365499.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium
           ICC168]
 gi|282949088|emb|CBG88694.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium
           ICC168]
          Length = 309

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 148 GLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 207

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + L++ G+ + ++ ++ G A         P ++ NRRI +LV +
Sbjct: 208 GYSNWELSADRANASRRELVQGGLDDGKVLRVVGMAATMRLSDRGPEDAVNRRISLLVLN 267

Query: 341 RQG 343
           RQ 
Sbjct: 268 RQA 270



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++ A        GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQSHP-IVVVKRRKAKGHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T      D ++P
Sbjct: 61 EYFRTPLATAVTGGHRFSDSESP 83


>gi|254438344|ref|ZP_05051838.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307]
 gi|198253790|gb|EDY78104.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307]
          Length = 275

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 5  GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
          GDK   N   IIIK+K  I    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K 
Sbjct: 4  GDK--ANAPVIIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFLMMWLLNATTEQQRKG 61

Query: 65 IEQYFNP 71
          +  YF P
Sbjct: 62 LADYFAP 68



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           LV    ++ V+   T  G++I +  + + P+F   S+ P P  I +           T  
Sbjct: 139 LVQQEALRHVVTRVTDEGLIIEVFARDDAPLFISESTEPAPVLIELTTMFARTFDLVTNP 198

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I GHT   P     R  W +S  RA +  ++L   G+   RI++I+G A   L    +
Sbjct: 199 VAIEGHTRTRPLVIAERPVWDISTGRAETVRRLLEAGGLDSLRIARITGNADRDLA-RVE 257

Query: 326 PMNSANRRIDILV 338
            ++  N RI+I++
Sbjct: 258 ALSVRNNRIEIIL 270


>gi|186473029|ref|YP_001860371.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184195361|gb|ACC73325.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 327

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL+ L  K+S+ +    A    K  +    T  G+ I I+D    PMF   SS      +
Sbjct: 134 RLEQLKSKLSALIEDTPALKAFKDQIRISITNEGLRIEIVDTLKRPMFATGSSKLQSYAV 193

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L +IG  L      ISI GHTDA  + N      NW LS +RA +A + L+  G+ ED
Sbjct: 194 EILTRIGAALNDVDNRISIAGHTDAVTYANGPAGYSNWELSSERANAARRALVAGGMRED 253

Query: 308 RISKISGFA---HHRLKIASDPMNSANRRIDILV 338
           ++ ++ G A        +A +P    NRRI +LV
Sbjct: 254 KLLQVRGLADVLPLNANVADEPT---NRRISVLV 284



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
          +WKI YADF+T +MAFFL+MW++ +T    K+ IE YFN    +L+  ++G
Sbjct: 36 AWKIAYADFVTAMMAFFLLMWLLGSTSKYDKQGIEDYFNTPLSSLLGGNEG 86


>gi|332187888|ref|ZP_08389621.1| ompA family protein [Sphingomonas sp. S17]
 gi|332012049|gb|EGI54121.1| ompA family protein [Sphingomonas sp. S17]
          Length = 297

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + + V F  T +G+ I ++D  +  MF   ++   P    ++  I + +A     I IRG
Sbjct: 160 LAQQVRFIPTDSGLRIDLVDNADYSMFSMGTTSLEPAASQLIGTIAKTVADVPNTIMIRG 219

Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HTD+ P+ +  A +NW LS  RA +  + L   G+ E R  +I G A     I  +P + 
Sbjct: 220 HTDSVPYGDPRAMNNWMLSSGRAEATRRRLAAGGLPESRFERIEGVADREPMITGNPSDP 279

Query: 330 ANRRIDILVEDRQG 343
            NRR+ I +  R+G
Sbjct: 280 RNRRVAITLLYRKG 293



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 4  HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          HG KN E  + +I+KK +A     ++ G+WK+ YADF+T +MAFFL++W++ AT +  +K
Sbjct: 6  HG-KN-EPPKIVIVKKIIADGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEKQRK 63

Query: 64 AIEQYFNP 71
           I  YF P
Sbjct: 64 GIADYFAP 71


>gi|239908607|ref|YP_002955349.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239798474|dbj|BAH77463.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 346

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
           + + I+D+   P++D      LP+   +L  + +V+      ++I GHTDA  +   A  
Sbjct: 183 VRVEIMDKAERPLYDLGGVALLPDAQRILAAVTDVIRKEGVKVAIEGHTDAYRYSG-AYS 241

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           NW LS  RA +A + ++ +G++ D +++++G++  R  +   P +  NRRI +L+
Sbjct: 242 NWDLSAGRALAARRFMVGAGLNPDAVAEVTGYSDTRPYVPGKPYDPKNRRISLLL 296



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          GSWK+ YAD +T +MAFFL+MW+++    + K+ I  YFN F
Sbjct: 25 GSWKVAYADLVTAMMAFFLLMWLLSNAPQEKKEEIANYFNEF 66


>gi|156933520|ref|YP_001437436.1| flagellar motor protein MotB [Cronobacter sakazakii ATCC BAA-894]
 gi|156531774|gb|ABU76600.1| hypothetical protein ESA_01340 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      +S+ GHTD  P
Sbjct: 143 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFP 202

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333
           + N  R   NW LS DRA ++ + L+  G+ + ++ ++ G A   +++A    N A NRR
Sbjct: 203 YANGERGYSNWELSADRANASRRELVIGGLDDGKVLRVVGMAAT-MRLAEKGANEALNRR 261

Query: 334 IDILVEDRQ 342
           I +LV ++Q
Sbjct: 262 ISLLVLNKQ 270



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF 
Sbjct: 5  NHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYFR 64

Query: 71 PFGKNLMTASKGIFDEQNP 89
                +T    I D ++P
Sbjct: 65 TPLSAAITGGHRIADSESP 83


>gi|50120622|ref|YP_049789.1| flagellar motor protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611148|emb|CAG74594.1| chemotaxis protein [Pectobacterium atrosepticum SCRI1043]
          Length = 351

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID +N PMF   S+   P    +L+ I  ++      +SI GHTD 
Sbjct: 137 LLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPIMNDFPNKLSISGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
             +    R   NW LS DRA ++ + L+  G+S+ ++ ++ G A    LK A+   ++ N
Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIWGGLSDGKVLRVVGMAATMSLKQAASGNDAIN 256

Query: 332 RRIDILVEDRQG 343
           RRI +LV  RQ 
Sbjct: 257 RRISLLVLSRQA 268



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF
Sbjct: 4  QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60


>gi|253688988|ref|YP_003018178.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755566|gb|ACT13642.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 350

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID +N PMF   S+   P    +L+ I  +L      +SI GHTD 
Sbjct: 137 LLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
             +    R   NW LS DRA ++ + L+  G+S+ ++ ++ G A    LK A+   ++ N
Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMNLKQATGGNDAIN 256

Query: 332 RRIDILVEDRQG 343
           RRI +LV  RQ 
Sbjct: 257 RRISLLVLSRQA 268



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF
Sbjct: 4  QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60


>gi|91977304|ref|YP_569963.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91683760|gb|ABE40062.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 286

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K V+FE T  G+ + + DQ   PMF + S++P   T +++ ++   L  +   +SI GHT
Sbjct: 147 KNVVFEETPLGLNLELTDQEGRPMFPEGSAVPYERTRMLIARLAAPLRATALRVSIVGHT 206

Query: 273 DASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
            A+P   +   D + LS  RA +  QVL + G++  RI  ++G           P  +AN
Sbjct: 207 AAAPVNADDEYDAFDLSTSRANAVRQVLKREGLAASRIMLVAGKGDGEPLFPEAPTLAAN 266

Query: 332 RRIDI 336
           RR+ I
Sbjct: 267 RRVTI 271


>gi|85706141|ref|ZP_01037236.1| putative chemotaxis MotB protein [Roseovarius sp. 217]
 gi|85669305|gb|EAQ24171.1| putative chemotaxis MotB protein [Roseovarius sp. 217]
          Length = 287

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M++H      N   +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT + 
Sbjct: 1  MSAH-----SNAAPVIIKRKKIVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQ 55

Query: 61 TKKAIEQYFNP 71
           +K I  YF+P
Sbjct: 56 QRKGISDYFSP 66



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           LVAD  ++ ++   T   ++I I D     +F+    +  P    +L+ +  +LA +  +
Sbjct: 148 LVADETLRHIVTRLTDEELVIEIFDLPQAQLFEVDGVVATP----LLKDLTALLASAANL 203

Query: 266 I----SIRGHTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +    ++ GHT A P   +AR+  W LS  RA    Q+L   G+S  R+ +I+G A  R 
Sbjct: 204 VVNDVALAGHTRAQPI-TLARNPVWDLSSSRANQFRQMLEAEGLSAKRMRRITGHA-DRT 261

Query: 321 KIASDPMNSANRRIDILV 338
               DPM+  N R+++++
Sbjct: 262 SAVLDPMDLRNNRLEMIL 279


>gi|323945384|gb|EGB41438.1| OmpA family protein [Escherichia coli H120]
          Length = 148

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I I GHTDA  ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +
Sbjct: 37  IIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKN 96

Query: 326 PMNSANRRIDILV 338
           P ++ NRRI+I+V
Sbjct: 97  PQSAGNRRIEIMV 109


>gi|227112504|ref|ZP_03826160.1| flagellar motor protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326903|ref|ZP_03830927.1| flagellar motor protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 351

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID +N PMF   S+   P    +L+ I  +L      +SI GHTD 
Sbjct: 137 LLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
             +    R   NW LS DRA ++ + L+  G+S+ ++ ++ G A    LK A+   ++ N
Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMSLKQATGGNDAIN 256

Query: 332 RRIDILVEDRQG 343
           RRI +LV  RQ 
Sbjct: 257 RRISLLVLSRQA 268



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF
Sbjct: 4  QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60


>gi|317491635|ref|ZP_07950071.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921182|gb|EFV42505.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 329

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF+  S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 138 LLINMMDEGLRIQIIDSQNRPMFENGSARVEPYMRDILRAIAPILNDVPNKISLSGHTDD 197

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+ +  R   NW LS DRA ++ + L+  G++E +I ++ G A   + + S   ++A N
Sbjct: 198 LPYASGERGYSNWELSADRANASRRELIAGGLAEGKILRVVGMA-DTMSLKSQTSDAAIN 256

Query: 332 RRIDILV 338
           RRI ILV
Sbjct: 257 RRISILV 263



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          N   I++KK+       ++ GSWKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 5  NRPIILVKKRKPSKKGGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTKIAEYF 63


>gi|90423959|ref|YP_532329.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90105973|gb|ABD88010.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 283

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           I K V+FE T  G+ + I+DQ   PMF   S +P   T+++++K+   L  +   ISI G
Sbjct: 142 ISKNVMFEETPQGLNLQIVDQEGRPMFPDGSPLPYERTMLLVRKLAAPLRATALRISIVG 201

Query: 271 HTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT    +P R+   D + LS  RA +  Q+L   G+    +  ++G A         P+ 
Sbjct: 202 HTSSTGAPGRD-DDDAFVLSWQRANTVRQILKGEGLPSSHVFAVTGKADSEPLFPDAPLL 260

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 261 AANRRVTI 268


>gi|114762178|ref|ZP_01441646.1| chemotaxis protein MotB [Pelagibaca bermudensis HTCC2601]
 gi|114545202|gb|EAU48205.1| chemotaxis protein MotB [Roseovarius sp. HTCC2601]
          Length = 277

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 41/57 (71%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +IIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+P
Sbjct: 10 VIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSP 66



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +++D +++ ++   T  G+++ +      P+FD   +   P  +  L+ +  V+A  +++
Sbjct: 144 MISDTLMRHIVTRVTDEGLVVELFATEEAPLFDAQGA---PTEL--LRALSGVIAGVSDM 198

Query: 266 I----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +    +I GH  A P   +ARD +W +S   A    ++L+  G+S+ RI++++  A  R 
Sbjct: 199 VTNPLAIEGHVGAYPI-VLARDPSWEVSTRHADRFRELLLADGLSKARINRVTAHA-DRE 256

Query: 321 KIASDPMNSANRRIDIL 337
              ++PM+  N R++I+
Sbjct: 257 PAKNNPMDPRNTRLEII 273


>gi|162420339|ref|YP_001607210.1| flagellar motor protein MotB [Yersinia pestis Angola]
 gi|162353154|gb|ABX87102.1| chemotaxis MotB protein [Yersinia pestis Angola]
          Length = 421

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|170692674|ref|ZP_02883836.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170142330|gb|EDT10496.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 328

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 15/174 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           P++    +A     RLQ L +K+ S +         K  +    T  G+ I I+D +N P
Sbjct: 119 PVNVVPTVAPADAARLQQLKEKLISLIEQSPTLKAFKDQIRISITNEGLRIEIVDSQNRP 178

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293
           MF   S       + +L +IG  L      ISI GHTDA P+    +   NW LS +RA 
Sbjct: 179 MFASGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERAN 238

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341
           +A + L+  G+  +++ ++ G A         P+NS       NRRI ILV ++
Sbjct: 239 AARRALVSGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 286



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query: 3  SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
          S G +++     I+ + K   D   ++ G+WKI YADF+T +MAFFL+MW++ +T    K
Sbjct: 6  SRGSEDEAPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFDK 65

Query: 63 KAIEQYFNPFGKNLMTASKG 82
          + IE YFN    +L+  S+G
Sbjct: 66 QGIEDYFNTPLSSLLGGSEG 85


>gi|22125717|ref|NP_669140.1| flagellar motor protein MotB [Yersinia pestis KIM 10]
 gi|108807851|ref|YP_651767.1| flagellar motor protein MotB [Yersinia pestis Antiqua]
 gi|108812127|ref|YP_647894.1| flagellar motor protein MotB [Yersinia pestis Nepal516]
 gi|149366375|ref|ZP_01888409.1| chemotaxis MotB protein [Yersinia pestis CA88-4125]
 gi|165925475|ref|ZP_02221307.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938485|ref|ZP_02227042.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008640|ref|ZP_02229538.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210582|ref|ZP_02236617.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401678|ref|ZP_02307169.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422628|ref|ZP_02314381.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426350|ref|ZP_02318103.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928797|ref|YP_002346672.1| flagellar motor protein MotB [Yersinia pestis CO92]
 gi|229841656|ref|ZP_04461814.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843773|ref|ZP_04463916.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894516|ref|ZP_04509698.1| chemotaxis MotB protein [Yersinia pestis Pestoides A]
 gi|229902447|ref|ZP_04517566.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|270490373|ref|ZP_06207447.1| flagellar motor protein MotB [Yersinia pestis KIM D27]
 gi|294504144|ref|YP_003568206.1| flagellar motor protein [Yersinia pestis Z176003]
 gi|21958635|gb|AAM85391.1|AE013785_4 lateral flagellar motor protein [Yersinia pestis KIM 10]
 gi|108775775|gb|ABG18294.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|108779764|gb|ABG13822.1| chemotaxis MotB protein [Yersinia pestis Antiqua]
 gi|115347408|emb|CAL20310.1| chemotaxis MotB protein [Yersinia pestis CO92]
 gi|149290749|gb|EDM40824.1| chemotaxis MotB protein [Yersinia pestis CA88-4125]
 gi|165913600|gb|EDR32220.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922584|gb|EDR39735.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165993022|gb|EDR45323.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207762|gb|EDR52242.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958475|gb|EDR55496.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048783|gb|EDR60191.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054705|gb|EDR64509.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680493|gb|EEO76590.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|229689381|gb|EEO81444.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694119|gb|EEO84167.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229703535|gb|EEO90552.1| chemotaxis MotB protein [Yersinia pestis Pestoides A]
 gi|262366194|gb|ACY62751.1| flagellar motor protein [Yersinia pestis D182038]
 gi|270338877|gb|EFA49654.1| flagellar motor protein MotB [Yersinia pestis KIM D27]
 gi|294354603|gb|ADE64944.1| flagellar motor protein [Yersinia pestis Z176003]
          Length = 427

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|45441604|ref|NP_993143.1| flagellar motor protein MotB [Yersinia pestis biovar Microtus str.
           91001]
 gi|145599064|ref|YP_001163140.1| flagellar motor protein MotB [Yersinia pestis Pestoides F]
 gi|45436465|gb|AAS62020.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|145210760|gb|ABP40167.1| chemotaxis MotB protein [Yersinia pestis Pestoides F]
 gi|320014810|gb|ADV98381.1| chemotaxis MotB protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|257097127|pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Ii)
 gi|257097128|pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Ii)
 gi|257097129|pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Iii)
 gi|257097130|pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Iii)
          Length = 183

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 44  IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 103

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 104 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 163

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 164 SLLVLNKQA 172


>gi|153950639|ref|YP_001400614.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 31758]
 gi|152962134|gb|ABS49595.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 31758]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|51596729|ref|YP_070920.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 32953]
 gi|186895791|ref|YP_001872903.1| flagellar motor protein MotB [Yersinia pseudotuberculosis PB1/+]
 gi|51590011|emb|CAH21644.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 32953]
 gi|186698817|gb|ACC89446.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 439

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|167466606|ref|ZP_02331310.1| flagellar motor protein MotB [Yersinia pestis FV-1]
          Length = 427

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YA  MT +MAFFL    +  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYAKVMTAMMAFFLGAVRLAVSSPQELPQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|170023989|ref|YP_001720494.1| flagellar motor protein MotB [Yersinia pseudotuberculosis YPIII]
 gi|169750523|gb|ACA68041.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 451

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD  P+    R
Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  NRRI ILV
Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263

Query: 339 EDRQ 342
            ++Q
Sbjct: 264 LNKQ 267



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|333010781|gb|EGK30207.1| lateral flagellar motor protein B [Shigella flexneri K-272]
 gi|333021279|gb|EGK40532.1| lateral flagellar motor protein B [Shigella flexneri K-227]
          Length = 256

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243
           A+ +KK   +L + ++++++ +  D  ++  L  E    G+ + I D +N  MF++ S+ 
Sbjct: 64  ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            +P    +L ++  V       I I GHTDA   +N   +NW LS DRA SA +VL ++G
Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMANKNNIYNNWNLSGDRALSARRVLEEAG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217


>gi|116624960|ref|YP_827116.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228122|gb|ABJ86831.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 276

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+ I +++      F+    +P      +L+++ E L      + I GHTD+ PF  
Sbjct: 128 TSDGLRIELLETEAGMFFESGRPLPTSTGSELLKRLAEELGKMPNHLLIEGHTDSKPFSG 187

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA +A +++  + V  ++++++ GF   +L+   DP +++NRR+ ++V
Sbjct: 188 DGTYTNWELSSDRANAARRLMESNAVRHEQVAQVRGFGDRQLRHPEDPEHASNRRVSVIV 247

Query: 339 E 339
           +
Sbjct: 248 Q 248



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 15/134 (11%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPF 72
           F+I KKKV      ++ G+WK+ YADF+T +MA F+V+W+++A D+  K+AI  +F NP 
Sbjct: 19  FVIKKKKVMHGG--HHGGAWKVAYADFVTAMMALFIVLWLMSA-DEKVKEAISAFFNNPT 75

Query: 73  GKN--LMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--------KNSVDLKIGSTNQKK 122
           G    + T S G  +    P +   +K+   I++ +         K+ V++ I S   + 
Sbjct: 76  GPGTQIGTDSAGTGNAIEVP-KEDMSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRI 134

Query: 123 QYQRLENNIFYLSN 136
           +    E  +F+ S 
Sbjct: 135 ELLETEAGMFFESG 148


>gi|213647163|ref|ZP_03377216.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 275

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 108 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 167

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 168 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 227

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 228 SLLVLNKQA 236


>gi|260574379|ref|ZP_05842383.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259023275|gb|EEW26567.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 280

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 197 KKISSTLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +K  + L G  +  +  ++ V+ + T  G++I I D +  P+F + +  P P    + + 
Sbjct: 133 EKALTALGGESMTMEAALRHVVTKVTDEGLVIEIFDLQEAPLFAEGTDDPQPVLRDIAKM 192

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           + EVL  ++  +++ G+  A P   I    W LS  RA +   ++  +G+  +R+ +ISG
Sbjct: 193 LAEVLGLASNSVAVNGYVKAYPIMMIDNPVWDLSAARAQAMRDLIQTAGLPANRVQRISG 252

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDR 341
           +A H+  + +DP    N R+++++  R
Sbjct: 253 YADHK-PVTADPTAIRNNRVEVILLRR 278



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFFL+MWI+ AT +  +K +  YF+P
Sbjct: 31 AWKVAYADFVTAMMAFFLLMWILGATTEKQRKGVADYFSP 70


>gi|294675563|ref|YP_003576178.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003]
 gi|294474383|gb|ADE83771.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003]
          Length = 283

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  YFNP
Sbjct: 10 VIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYFNP 66



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 195 LAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +AK+I   LS      +V++ + + ++ + T  G+++   D  + P+F   ++ P P   
Sbjct: 131 MAKEIEKALSATSGESMVSEQLARHIVTKVTDEGLIVEFFDLEDEPLFRPDTAEPEPILG 190

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSED 307
            +   +  V   +   ++I GHT + P  ++ R N  W LS +RA     ++  +G    
Sbjct: 191 EIAGMLTRVFGLTKNNVAINGHTRSYP--SMLRTNPVWDLSSERAQRMRILMETAGFDAA 248

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           R+ ++SGFA  +  + +  M+  N R+++++
Sbjct: 249 RLQRVSGFADRKPAVETR-MSVRNNRLELIL 278


>gi|194434087|ref|ZP_03066356.1| chemotaxis protein MotB [Shigella dysenteriae 1012]
 gi|300951513|ref|ZP_07165348.1| chemotaxis protein MotB [Escherichia coli MS 116-1]
 gi|194417631|gb|EDX33731.1| chemotaxis protein MotB [Shigella dysenteriae 1012]
 gi|300449263|gb|EFK12883.1| chemotaxis protein MotB [Escherichia coli MS 116-1]
 gi|332095082|gb|EGJ00116.1| chemotaxis protein motB [Shigella dysenteriae 155-74]
          Length = 308

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  GV   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGVDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|148254925|ref|YP_001239510.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1]
 gi|146407098|gb|ABQ35604.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1]
          Length = 276

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 120/309 (38%), Gaps = 66/309 (21%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M +L++FF+++   +  D++  K +     + FG    +   GI +    P
Sbjct: 15  GWFVTFADLMGLLVSFFVMLVAFSTMDNNKLKVVAGSMRDAFGVQSESRYSGIVESDGLP 74

Query: 91  ERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
            R   +N   +S +E   + S           +Q +R   N   L   +Q      SL  
Sbjct: 75  TRPKLKNAAHVSPEETSREPS----------PEQEERQHTNGAKLKTDRQFALASASL-- 122

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                                                  ++ LQD+ +            
Sbjct: 123 ---------------------------------------RQALQDMPEMT---------- 133

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            I K ++FE T+ G+ + I+DQ    MF   S +P   T  +++K+   L  +   + I 
Sbjct: 134 EISKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLAAPLKATPLRVQIT 193

Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHT A   P R+     + LS DRA +  Q+L + G+    I  +SG A  +     DP 
Sbjct: 194 GHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSGKADTQPLFPDDPS 252

Query: 328 NSANRRIDI 336
            +ANRR+ I
Sbjct: 253 LAANRRVTI 261


>gi|261821136|ref|YP_003259242.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163]
 gi|261605149|gb|ACX87635.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163]
          Length = 350

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID +N PMF   S+   P    +L+ I  +L      +SI GHTD 
Sbjct: 137 LLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
             +    R   NW LS DRA ++ + L   G+S+ ++ ++ G A    LK A+   ++ N
Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELTFGGLSDGKVLRVVGMAATMSLKQATSGNDAIN 256

Query: 332 RRIDILVEDRQG 343
           RRI +LV  +Q 
Sbjct: 257 RRISLLVLSKQA 268



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF
Sbjct: 4  QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60


>gi|238758125|ref|ZP_04619305.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236]
 gi|238703663|gb|EEP96200.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236]
          Length = 364

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 8/125 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+    R
Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATGER 171

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337
              NW LS DRA ++ + L+  G+ + ++ ++ G A   RLK   + DP+   NRRI IL
Sbjct: 172 GYSNWELSADRANASRRELLAGGLDDGKVLRVVGMASTMRLKEQTSDDPV---NRRISIL 228

Query: 338 VEDRQ 342
           V ++Q
Sbjct: 229 VLNKQ 233


>gi|213416605|ref|ZP_03349749.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 170

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 3   IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 62

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 63  YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 122

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 123 SLLVLNKQA 131


>gi|16760871|ref|NP_456488.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141437|ref|NP_804779.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163277|ref|ZP_03348987.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213622329|ref|ZP_03375112.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|25298889|pir||AF0746 motility protein B [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503168|emb|CAD05673.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137064|gb|AAO68628.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 309

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83


>gi|300904777|ref|ZP_07122605.1| chemotaxis protein MotB [Escherichia coli MS 84-1]
 gi|301305233|ref|ZP_07211330.1| chemotaxis protein MotB [Escherichia coli MS 124-1]
 gi|300403291|gb|EFJ86829.1| chemotaxis protein MotB [Escherichia coli MS 84-1]
 gi|300839439|gb|EFK67199.1| chemotaxis protein MotB [Escherichia coli MS 124-1]
 gi|315257277|gb|EFU37245.1| chemotaxis protein MotB [Escherichia coli MS 85-1]
          Length = 308

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMCLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|213426377|ref|ZP_03359127.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 309

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83


>gi|16765264|ref|NP_460879.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56413159|ref|YP_150234.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180499|ref|YP_216916.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613518|ref|YP_001587483.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552438|ref|ZP_02346191.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994228|ref|ZP_02575320.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168238556|ref|ZP_02663614.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168241555|ref|ZP_02666487.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168259799|ref|ZP_02681772.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168462543|ref|ZP_02696474.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820750|ref|ZP_02832750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444100|ref|YP_002041189.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450845|ref|YP_002045977.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472145|ref|ZP_03078129.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737421|ref|YP_002114959.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248088|ref|YP_002146098.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264977|ref|ZP_03165051.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197362085|ref|YP_002141722.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243979|ref|YP_002215160.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390054|ref|ZP_03216665.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204931026|ref|ZP_03221852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205352375|ref|YP_002226176.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856557|ref|YP_002243208.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583574|ref|YP_002637372.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912501|ref|ZP_04656338.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|2494511|sp|P55892|MOTB_SALTY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|1764128|gb|AAC45266.1| MotB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420459|gb|AAL20838.1| enables flagellar motor rotation [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56127416|gb|AAV76922.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62128132|gb|AAX65835.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362882|gb|ABX66650.1| hypothetical protein SPAB_01238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402763|gb|ACF62985.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409149|gb|ACF69368.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458509|gb|EDX47348.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712923|gb|ACF92144.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634203|gb|EDX52555.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197093562|emb|CAR59024.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211791|gb|ACH49188.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243232|gb|EDY25852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288646|gb|EDY28021.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938495|gb|ACH75828.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602499|gb|EDZ01045.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320070|gb|EDZ05275.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205272156|emb|CAR37011.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322895|gb|EDZ10734.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327891|gb|EDZ14655.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205339183|gb|EDZ25947.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342679|gb|EDZ29443.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350979|gb|EDZ37610.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708360|emb|CAR32664.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468101|gb|ACN45931.1| flagellar motor protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247092|emb|CBG24913.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993909|gb|ACY88794.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158442|emb|CBW17951.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912916|dbj|BAJ36890.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085458|emb|CBY95239.1| Chemotaxis protein motB Motility protein B [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224566|gb|EFX49629.1| Flagellar motor rotation protein MotB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616922|gb|EFY13830.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618161|gb|EFY15053.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625831|gb|EFY22650.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626283|gb|EFY23093.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632697|gb|EFY29442.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639041|gb|EFY35734.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640481|gb|EFY37134.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646010|gb|EFY42527.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655476|gb|EFY51784.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660255|gb|EFY56493.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322668121|gb|EFY64280.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674119|gb|EFY70213.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675527|gb|EFY71601.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683059|gb|EFY79075.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686753|gb|EFY82731.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322714975|gb|EFZ06546.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130206|gb|ADX17636.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195356|gb|EFZ80536.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199248|gb|EFZ84343.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204163|gb|EFZ89175.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323211878|gb|EFZ96707.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217488|gb|EGA02207.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221977|gb|EGA06366.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231510|gb|EGA15623.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235952|gb|EGA20031.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240522|gb|EGA24565.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245414|gb|EGA29414.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250185|gb|EGA34077.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253633|gb|EGA37461.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258567|gb|EGA42233.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259386|gb|EGA43023.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266189|gb|EGA49679.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|326622909|gb|EGE29254.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627426|gb|EGE33769.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988815|gb|AEF07798.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 309

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83


>gi|238026965|ref|YP_002911196.1| OmpA/MotB [Burkholderia glumae BGR1]
 gi|237876159|gb|ACR28492.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 312

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +   TTR G+ I I+D R+ PMF   SS        +L +IG VL      +S+ GHTDA
Sbjct: 157 IRLSTTREGLRIEIVDSRSRPMFATGSSRLEDYAYDILFQIGGVLNQVDNRVSLAGHTDA 216

Query: 275 SPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+        NW LS +RA +A + L+   + ED++ ++ G A              NR
Sbjct: 217 VPYSGGIAGYSNWELSSERANAARRALVAGHLREDKLLQVRGLADVLPFDRGVADAEVNR 276

Query: 333 RIDILVEDRQ 342
           RI ILV +++
Sbjct: 277 RISILVLNKE 286



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          G+WKI YADF+T +MAFFL+MW++ +T    ++ IE YFN
Sbjct: 35 GAWKIAYADFVTAMMAFFLLMWLLGSTSKYERQGIESYFN 74


>gi|213024875|ref|ZP_03339322.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 189

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 22  IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 81

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 82  YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 141

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 142 SLLVLNKQA 150


>gi|262362261|gb|ACY58982.1| chemotaxis MotB protein [Yersinia pestis D106004]
          Length = 276

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF   S+   P    +L+ I  +L      +S+ GHTD 
Sbjct: 138 LLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDD 197

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330
            P+    R   NW LS DRA ++ + L+  G+ E +I ++ G A   RLK  ASD  +  
Sbjct: 198 LPYARGERGYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPV 255

Query: 331 NRRIDILVEDRQ 342
           NRRI ILV +++
Sbjct: 256 NRRISILVLNKR 267



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3  HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69 F 69
          F
Sbjct: 63 F 63


>gi|161502956|ref|YP_001570068.1| flagellar motor protein MotB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864303|gb|ABX20926.1| hypothetical protein SARI_01018 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 309

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       + 
Sbjct: 2  KNQAHP-IVVVKRRKHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQLA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83


>gi|323224726|gb|EGA08995.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 309

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 262 SLLVLNKQ 269



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T   G+   ++P
Sbjct: 61 EYFRTPLATAVTGGTGLPIAESP 83


>gi|258513971|ref|YP_003190193.1| OmpA/MotB domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777676|gb|ACV61570.1| OmpA/MotB domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 275

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           PP+  ++I   K  ++L++L K++   +      N+   +L      G+++S +D     
Sbjct: 78  PPIQVQQI--QKEAEQLKELQKELHDLIE---KKNLTGHILVSIEERGLVVSFLDPV--- 129

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294
           +F   S+   P+   ++Q++G++L  S   I I GHTD  P    I   NW LS  RA S
Sbjct: 130 LFPLGSAQLTPKAKNIVQEVGQILLKSDNYIRIEGHTDDIPINTAIYPSNWELSAARATS 189

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             Q L+K+     +R++  +G+  +R ++ +D M+    NRR+DI+V
Sbjct: 190 VVQELIKTMSFPPERLAA-TGYGEYRPRVPNDSMDHKQMNRRVDIVV 235


>gi|269138690|ref|YP_003295391.1| flagellar motor protein [Edwardsiella tarda EIB202]
 gi|267984351|gb|ACY84180.1| flagellar motor protein [Edwardsiella tarda EIB202]
 gi|304558696|gb|ADM41360.1| Flagellar motor rotation protein MotB [Edwardsiella tarda FL6-60]
          Length = 332

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N  R
Sbjct: 148 GLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNELPNKISLSGHTDDLPYANGER 207

Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332
              NW LS DRA ++ + L+  G++ ++I ++ G A        D MN        + NR
Sbjct: 208 GYSNWELSADRANASRRELIAGGLAGNKILRVVGMA--------DTMNLRNLAGNAAVNR 259

Query: 333 RIDILV 338
           RI ILV
Sbjct: 260 RISILV 265



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          I++KKK       ++ G+WKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 9  ILVKKKRGGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63


>gi|295095518|emb|CBK84608.1| Flagellar motor protein [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 309

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           KKR+ Q   KK+   L  L+ AD  ++ +      +  + G+ I IID +N PMF   S+
Sbjct: 108 KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L+ I  VL      IS+ GHTD  P+    +   NW LS DRA ++ + L+
Sbjct: 168 DVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSNWELSADRANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 228 AGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I +  +P
Sbjct: 61 EYFRTPLATAVTGGPRISNSDSP 83


>gi|209919315|ref|YP_002293399.1| flagellar motor protein MotB [Escherichia coli SE11]
 gi|218554477|ref|YP_002387390.1| flagellar motor protein MotB [Escherichia coli IAI1]
 gi|209912574|dbj|BAG77648.1| chemotaxis protein MotB [Escherichia coli SE11]
 gi|218361245|emb|CAQ98829.1| protein that enables flagellar motor rotation [Escherichia coli
           IAI1]
 gi|324017971|gb|EGB87190.1| chemotaxis protein MotB [Escherichia coli MS 117-3]
          Length = 308

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|56551498|ref|YP_162337.1| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|56543072|gb|AAV89226.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 326

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 47/71 (66%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1  MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61 TKKAIEQYFNP 71
           +K I  YFNP
Sbjct: 61 ERKGIADYFNP 71



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277
           TR G+ I ++DQ +  MF   +   +P    ++ ++  V+     +I +RGHTDA P+  
Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223

Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            +N+  +NW LS  RA +  + L+  GV  +R  +I G A     +  + M+  NRR+ I
Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281


>gi|241761142|ref|ZP_04759231.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
          10988]
 gi|241374761|gb|EER64222.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
          10988]
          Length = 326

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 47/71 (66%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1  MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61 TKKAIEQYFNP 71
           +K I  YFNP
Sbjct: 61 ERKGIADYFNP 71



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277
           TR G+ I ++DQ +  MF   +   +P    ++ ++  V+     +I +RGHTDA P+  
Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223

Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            +N+  +NW LS  RA +  + L+  GV  +R  +I G A     +  + M+  NRR+ I
Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281


>gi|260752895|ref|YP_003225788.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
          11163]
 gi|258552258|gb|ACV75204.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
          11163]
          Length = 326

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 47/71 (66%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1  MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61 TKKAIEQYFNP 71
           +K I  YFNP
Sbjct: 61 ERKGIADYFNP 71



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277
           TR G+ I ++DQ +  MF   +   +P    ++ ++  V+     +I +RGHTDA P+  
Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223

Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            +N+  +NW LS  RA +  + L+  GV  +R  +I G A     +  + M+  NRR+ I
Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281


>gi|293415204|ref|ZP_06657847.1| chemotaxis protein MotB [Escherichia coli B185]
 gi|291432852|gb|EFF05831.1| chemotaxis protein MotB [Escherichia coli B185]
          Length = 308

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGNRISNSESP 82


>gi|73532502|dbj|BAE19809.1| chemotaxis protein [Edwardsiella tarda]
          Length = 222

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N  R
Sbjct: 38  GLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNELPNKISLSGHTDDLPYANGER 97

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332
              NW LS DRA ++ + L+  G++ ++I ++ G A        D MN        + NR
Sbjct: 98  GYSNWELSADRANASRRELIAGGLAGNKILRVVGMA--------DTMNLRNLAGNAAVNR 149

Query: 333 RIDILV 338
           RI ILV
Sbjct: 150 RISILV 155


>gi|163738038|ref|ZP_02145454.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|161388654|gb|EDQ13007.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 278

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 132/328 (40%), Gaps = 100/328 (30%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83
           +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+P         G N       +
Sbjct: 27  AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFNGDSM 86

Query: 84  FDEQNPPERSS-----------QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           F E+  P+  +           Q K D  +++   + + D         +Q++ LE  + 
Sbjct: 87  FTEEIKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD---------EQFRALEEQLK 137

Query: 133 YLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                     E  ++ +TR +++G  + +  D E+S   +E    P L            
Sbjct: 138 GRGGESMVSIEMAQHIITRVTDEGL-VVELFDTEESPLFKEGTAEPTL------------ 184

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             +D+ K +S  ++G+V +NI  G                                    
Sbjct: 185 LFRDIVKMVSR-VTGVVENNIAIG------------------------------------ 207

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
                G + +H+  V +       +P        W LS  RA +   +L   G    R+ 
Sbjct: 208 -----GHIRSHAVVVAN-------NPV-------WELSHARADATRVMLESGGTRSKRMH 248

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
           +++G A  +L   S+PM++ N R++I++
Sbjct: 249 RVTGHADRKL-TDSNPMSARNNRVEIIL 275


>gi|331663388|ref|ZP_08364298.1| chemotaxis protein MotB [Escherichia coli TA143]
 gi|331059187|gb|EGI31164.1| chemotaxis protein MotB [Escherichia coli TA143]
          Length = 366

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 205 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 264

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 265 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 324

Query: 341 RQG 343
           +Q 
Sbjct: 325 KQA 327



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 60  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 117

Query: 67  QYFNPFGKNLMTASKGIFDEQNP 89
           +YF       +T    I + ++P
Sbjct: 118 EYFRTPLATAVTGGDRISNSESP 140


>gi|319944147|ref|ZP_08018425.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599]
 gi|319742641|gb|EFV95050.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 12/110 (10%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89
           G+WKI YADF+T +MAFFL+MW++++  ++T K I +YF  P   +L+  S G+ D   P
Sbjct: 27  GAWKIAYADFVTAMMAFFLLMWLLSSASENTLKGISEYFQQPLKLSLIGGS-GVGDATAP 85

Query: 90  PERSSQN--KIDLSIDEHITKN---SVDLKIGSTNQKKQYQRLENNIFYL 134
                 +  + D  +++ ITK      D+K+     +K  +RLE +I  +
Sbjct: 86  VPGGGTDLTRKDGQVNKGITKGKDSKKDVKL-----QKLKERLEASIMQV 130



 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K+  +LQ L +++ +++  + A   ++  +  E T  G+ I I+D    P+F    S  L
Sbjct: 111 KKDVKLQKLKERLEASIMQVPALEALRDQIRLEMTVDGLSIQIVDASKKPLFASGKSTVL 170

Query: 246 -PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQVLMK 301
            P    +++ IG++L      +S+ GHTDA+P+   +     NW LS +RA S+ + L++
Sbjct: 171 SPNMRELMRTIGKLLNEVENPVSLSGHTDATPYAGGSTGGYSNWELSTERANSSRRELVQ 230

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            G+  ++I ++ G         ++P +  NRRI I+V
Sbjct: 231 GGMDPNKILRVQGLGAVVPLDKTNPNDPMNRRIAIVV 267


>gi|323165315|gb|EFZ51103.1| chemotaxis protein motB [Shigella sonnei 53G]
          Length = 275

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233

Query: 341 RQG 343
           +Q 
Sbjct: 234 KQA 236


>gi|157145319|ref|YP_001452639.1| flagellar motor protein MotB [Citrobacter koseri ATCC BAA-895]
 gi|157082524|gb|ABV12202.1| hypothetical protein CKO_01059 [Citrobacter koseri ATCC BAA-895]
          Length = 308

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRGIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  R   NW LS DRA ++ + L+  G+ + ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGERGYSNWELSADRANASRRELVVGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRI 260

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 261 SLLVLNKQ 268



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   II+ K+          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQPHP--IIVVKRRKHKGHGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAITGGHRIANSESP 82


>gi|325525470|gb|EGD03283.1| flagellar motor protein MotB [Burkholderia sp. TJI49]
          Length = 201

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 50/242 (20%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +YFN P   
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNTPLKA 68

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L  +           +RSSQ   D SI   I     DL   S+      +R +      
Sbjct: 69  ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                       L     K  D      L+ ++ + E   L  L  + + A++    L+ 
Sbjct: 106 ----------TPLAERVAKPVDEAAQAQLQGALERREQARLHDLQIKLMAAIEANPTLRQ 155

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++
Sbjct: 156 FKQQIR----------------IDSTLLGLRIEIVDTQKRPMFAMSSDRVEPYMRDILRE 199

Query: 255 IG 256
           IG
Sbjct: 200 IG 201


>gi|209767218|gb|ACI81921.1| chemotaxis protein MotB [Escherichia coli]
 gi|320647103|gb|EFX15936.1| flagellar motor protein MotB [Escherichia coli O157:H- str. 493-89]
 gi|320652386|gb|EFX20684.1| flagellar motor protein MotB [Escherichia coli O157:H- str. H 2687]
          Length = 308

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|323158625|gb|EFZ44639.1| chemotaxis protein motB [Escherichia coli E128010]
          Length = 275

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233

Query: 341 RQG 343
           +Q 
Sbjct: 234 KQA 236


>gi|333003303|gb|EGK22849.1| chemotaxis protein motB [Shigella flexneri K-218]
          Length = 265

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 98  IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 157

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 158 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 217

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 218 SLLVLNKQA 226


>gi|256022446|ref|ZP_05436311.1| flagellar motor protein MotB [Escherichia sp. 4_1_40B]
 gi|300917528|ref|ZP_07134185.1| chemotaxis protein MotB [Escherichia coli MS 115-1]
 gi|300415233|gb|EFJ98543.1| chemotaxis protein MotB [Escherichia coli MS 115-1]
          Length = 308

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|24113274|ref|NP_707784.1| flagellar motor protein MotB [Shigella flexneri 2a str. 301]
 gi|30063341|ref|NP_837512.1| flagellar motor protein MotB [Shigella flexneri 2a str. 2457T]
 gi|110805869|ref|YP_689389.1| flagellar motor protein MotB [Shigella flexneri 5 str. 8401]
 gi|24052278|gb|AAN43491.1| chemotaxis protein MotB [Shigella flexneri 2a str. 301]
 gi|30041593|gb|AAP17321.1| chemotaxis protein MotB [Shigella flexneri 2a str. 2457T]
 gi|110615417|gb|ABF04084.1| flagellar motor protein [Shigella flexneri 5 str. 8401]
 gi|281601336|gb|ADA74320.1| Chemotaxis protein MotB [Shigella flexneri 2002017]
 gi|332757207|gb|EGJ87544.1| chemotaxis protein motB [Shigella flexneri 2747-71]
 gi|332757449|gb|EGJ87784.1| chemotaxis protein motB [Shigella flexneri K-671]
 gi|332766620|gb|EGJ96824.1| motB protein, enables flagellar motor rotation, linking torque
           machinery to cell wall [Shigella flexneri 2930-71]
 gi|333004150|gb|EGK23682.1| chemotaxis protein motB [Shigella flexneri K-272]
 gi|333017634|gb|EGK36946.1| chemotaxis protein motB [Shigella flexneri K-304]
          Length = 308

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|313650105|gb|EFS14518.1| chemotaxis protein motB [Shigella flexneri 2a str. 2457T]
 gi|332756040|gb|EGJ86393.1| chemotaxis protein motB [Shigella flexneri 4343-70]
 gi|333017760|gb|EGK37067.1| chemotaxis protein motB [Shigella flexneri K-227]
          Length = 275

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233

Query: 341 RQG 343
           +Q 
Sbjct: 234 KQA 236


>gi|260868487|ref|YP_003234889.1| MotB protein [Escherichia coli O111:H- str. 11128]
 gi|257764843|dbj|BAI36338.1| MotB protein [Escherichia coli O111:H- str. 11128]
 gi|323180688|gb|EFZ66233.1| chemotaxis protein motB [Escherichia coli 1180]
          Length = 308

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDLISNSESP 82


>gi|256829772|ref|YP_003158500.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578948|gb|ACU90084.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 300

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++ +T   G+ I ++     P FD +SS    +   VL+ I + +      I++ GHTDA
Sbjct: 129 LIIDTFDNGVRIQMLYGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTDA 188

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P    +    NW LS DRA SA  +L + G+   R+ +++G+A  +  I  +P +  NR
Sbjct: 189 VPLGGPSSRYTNWELSTDRASSARVILEEFGLDPKRMVRVAGYAATQPLIRENPEDPRNR 248

Query: 333 RIDILV 338
           R+ IL+
Sbjct: 249 RVSILL 254



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 27/160 (16%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---------------GKN- 75
           +WKI YAD +T +MAFFL+MW++N   ++ K+ +  YF  F               G++ 
Sbjct: 24  AWKIAYADLVTAMMAFFLLMWLLNNVSEEKKEQLSIYFKEFSVIDGLPPSMSVGAGGQSA 83

Query: 76  --------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                   +M  + G+F E    E   +  +   I+E + +   +L I + +   + Q L
Sbjct: 84  ADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKEELIIDTFDNGVRIQML 143

Query: 128 --ENNIFYLS-NSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
             E N F+ S +SQ +   +N L   ++  +DL     +E
Sbjct: 144 YGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVE 183


>gi|293410200|ref|ZP_06653776.1| motB [Escherichia coli B354]
 gi|291470668|gb|EFF13152.1| motB [Escherichia coli B354]
          Length = 241

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 74  IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 133

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 134 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 193

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 194 SLLVLNKQ 201


>gi|320177401|gb|EFW52402.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC
           74-1112]
          Length = 308

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 207 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266

Query: 341 RQG 343
           +Q 
Sbjct: 267 KQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQTHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|315617885|gb|EFU98483.1| chemotaxis protein motB [Escherichia coli 3431]
          Length = 265

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 98  IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 157

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 158 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 217

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 218 SLLVLNKQA 226


>gi|307131627|ref|YP_003883643.1| flagellar motor rotation protein motB [Dickeya dadantii 3937]
 gi|306529156|gb|ADM99086.1| Flagellar motor rotation protein motB [Dickeya dadantii 3937]
          Length = 376

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
           + +    R   NW LS DRA ++ + L+  G++E ++ ++ G A    LK A    ++ N
Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIIGGLAEGKVLRVVGMADTMNLKQAKGGSDAIN 254

Query: 332 RRIDILVEDRQ 342
           RRI ++V ++Q
Sbjct: 255 RRISLVVLNKQ 265



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF   
Sbjct: 4  QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63

Query: 73 GKNLMTASKGIFDEQNP 89
           K  +T+   + D  NP
Sbjct: 64 LKIAITSGPKMSDASNP 80


>gi|331673414|ref|ZP_08374182.1| chemotaxis protein MotB [Escherichia coli TA280]
 gi|331069612|gb|EGI40999.1| chemotaxis protein MotB [Escherichia coli TA280]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|271500049|ref|YP_003333074.1| OmpA/MotB domain-containing protein [Dickeya dadantii Ech586]
 gi|270343604|gb|ACZ76369.1| OmpA/MotB domain protein [Dickeya dadantii Ech586]
          Length = 376

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 42/77 (54%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF   
Sbjct: 4  QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63

Query: 73 GKNLMTASKGIFDEQNP 89
           K  +T+   I D  NP
Sbjct: 64 LKIAITSGPKISDASNP 80



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
           + +    R   NW LS DRA ++ + L+  G+++ ++ ++ G A    LK A    ++ N
Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAIN 254

Query: 332 RRIDILVEDRQ 342
           RRI ++V ++Q
Sbjct: 255 RRISLVVLNKQ 265


>gi|146341585|ref|YP_001206633.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278]
 gi|146194391|emb|CAL78416.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278]
          Length = 276

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 119/311 (38%), Gaps = 66/311 (21%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
            W + +AD M ++M+FF+++   +  D++  K +       FG    +   GI +    P
Sbjct: 15  GWFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMREAFGVQSESRYSGIVESDGLP 74

Query: 91  ERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
            R   +N   +S +E   + S           +Q +R   N   L   +Q      SL  
Sbjct: 75  TRPKLKNAAHISPEETSREPS----------PEQEERQHTNGAKLKTDRQFALASASL-- 122

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                                                  ++ LQD+ +            
Sbjct: 123 ---------------------------------------RQALQDMPEMT---------- 133

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            I K ++FE T+ G+ + I+DQ    MF   S  P   T  +++K+   L  +   + I 
Sbjct: 134 EISKHIMFEETKQGLNLEIVDQDGRSMFADGSKTPYDRTRRLIEKLAAPLKATPLRVQIT 193

Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHT A   P R+     + LS DRA +  Q+L + G+    I  +SG A  +     DP 
Sbjct: 194 GHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSGKADTQPLFPDDPS 252

Query: 328 NSANRRIDILV 338
            +ANRR+ I +
Sbjct: 253 LAANRRVTITL 263


>gi|15802301|ref|NP_288326.1| flagellar motor protein MotB [Escherichia coli O157:H7 EDL933]
 gi|15831853|ref|NP_310626.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. Sakai]
 gi|16129841|ref|NP_416403.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108729|ref|AP_002509.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. W3110]
 gi|157158423|ref|YP_001463195.1| flagellar motor protein MotB [Escherichia coli E24377A]
 gi|157161361|ref|YP_001458679.1| flagellar motor protein MotB [Escherichia coli HS]
 gi|168757929|ref|ZP_02782936.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401]
 gi|168762313|ref|ZP_02787320.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501]
 gi|168770876|ref|ZP_02795883.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486]
 gi|168776560|ref|ZP_02801567.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196]
 gi|168783193|ref|ZP_02808200.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076]
 gi|168789758|ref|ZP_02814765.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869]
 gi|168801871|ref|ZP_02826878.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508]
 gi|170019766|ref|YP_001724720.1| flagellar motor protein MotB [Escherichia coli ATCC 8739]
 gi|170081544|ref|YP_001730864.1| hypothetical protein ECDH10B_2030 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170684155|ref|YP_001743353.1| flagellar motor protein MotB [Escherichia coli SMS-3-5]
 gi|188492393|ref|ZP_02999663.1| chemotaxis protein MotB [Escherichia coli 53638]
 gi|191168098|ref|ZP_03029897.1| chemotaxis protein MotB [Escherichia coli B7A]
 gi|193065441|ref|ZP_03046510.1| chemotaxis protein MotB [Escherichia coli E22]
 gi|193069870|ref|ZP_03050819.1| chemotaxis protein MotB [Escherichia coli E110019]
 gi|194429327|ref|ZP_03061853.1| chemotaxis protein MotB [Escherichia coli B171]
 gi|194439077|ref|ZP_03071160.1| chemotaxis protein MotB [Escherichia coli 101-1]
 gi|195939593|ref|ZP_03084975.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. EC4024]
 gi|208810604|ref|ZP_03252480.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206]
 gi|208816679|ref|ZP_03257799.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045]
 gi|208819881|ref|ZP_03260201.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042]
 gi|209397424|ref|YP_002270973.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115]
 gi|217329015|ref|ZP_03445096.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588]
 gi|218695455|ref|YP_002403122.1| flagellar motor protein MotB [Escherichia coli 55989]
 gi|218705389|ref|YP_002412908.1| flagellar motor protein MotB [Escherichia coli UMN026]
 gi|238901104|ref|YP_002926900.1| protein that enables flagellar motor rotation [Escherichia coli
           BW2952]
 gi|253773154|ref|YP_003035985.1| flagellar motor protein MotB [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161949|ref|YP_003045057.1| flagellar motor protein MotB [Escherichia coli B str. REL606]
 gi|254793513|ref|YP_003078350.1| flagellar motor protein MotB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017907|ref|ZP_05431772.1| flagellar motor protein MotB [Shigella sp. D9]
 gi|260844299|ref|YP_003222077.1| MotB protein [Escherichia coli O103:H2 str. 12009]
 gi|260855829|ref|YP_003229720.1| MotB protein [Escherichia coli O26:H11 str. 11368]
 gi|261227610|ref|ZP_05941891.1| protein that enables flagellar motor rotation [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258224|ref|ZP_05950757.1| MotB protein [Escherichia coli O157:H7 str. FRIK966]
 gi|291283071|ref|YP_003499889.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615]
 gi|293405381|ref|ZP_06649373.1| motB [Escherichia coli FVEC1412]
 gi|293446276|ref|ZP_06662698.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|297517349|ref|ZP_06935735.1| flagellar motor protein MotB [Escherichia coli OP50]
 gi|298381025|ref|ZP_06990624.1| chemotaxis protein motB [Escherichia coli FVEC1302]
 gi|300819874|ref|ZP_07100059.1| chemotaxis protein MotB [Escherichia coli MS 107-1]
 gi|300822336|ref|ZP_07102477.1| chemotaxis protein MotB [Escherichia coli MS 119-7]
 gi|300899142|ref|ZP_07117423.1| chemotaxis protein MotB [Escherichia coli MS 198-1]
 gi|300924982|ref|ZP_07140907.1| chemotaxis protein MotB [Escherichia coli MS 182-1]
 gi|300928923|ref|ZP_07144427.1| chemotaxis protein MotB [Escherichia coli MS 187-1]
 gi|300956597|ref|ZP_07168876.1| chemotaxis protein MotB [Escherichia coli MS 175-1]
 gi|301029341|ref|ZP_07192438.1| chemotaxis protein MotB [Escherichia coli MS 196-1]
 gi|301327680|ref|ZP_07220887.1| chemotaxis protein MotB [Escherichia coli MS 78-1]
 gi|301645593|ref|ZP_07245522.1| chemotaxis protein MotB [Escherichia coli MS 146-1]
 gi|307138554|ref|ZP_07497910.1| flagellar motor protein MotB [Escherichia coli H736]
 gi|307314199|ref|ZP_07593809.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|309796000|ref|ZP_07690413.1| chemotaxis protein MotB [Escherichia coli MS 145-7]
 gi|312969933|ref|ZP_07784116.1| chemotaxis protein motB [Escherichia coli 1827-70]
 gi|331642507|ref|ZP_08343642.1| chemotaxis protein MotB [Escherichia coli H736]
 gi|331653299|ref|ZP_08354304.1| chemotaxis protein MotB [Escherichia coli M718]
 gi|331668586|ref|ZP_08369434.1| chemotaxis protein MotB [Escherichia coli TA271]
 gi|331677774|ref|ZP_08378449.1| chemotaxis protein MotB [Escherichia coli H591]
 gi|332278938|ref|ZP_08391351.1| flagellar motor rotation protein [Shigella sp. D9]
 gi|84028148|sp|P0AF07|MOTB_ECO57 RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|84028149|sp|P0AF06|MOTB_ECOLI RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|12515953|gb|AAG56879.1|AE005411_3 enables flagellar motor rotation, linking torque machinery to cell
           wall [Escherichia coli O157:H7 str. EDL933]
 gi|146883|gb|AAA24178.1| chemotaxis protein MotB [Escherichia coli]
 gi|1736548|dbj|BAA15710.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K12 substr. W3110]
 gi|1788198|gb|AAC74959.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13362067|dbj|BAB36022.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. Sakai]
 gi|157067041|gb|ABV06296.1| chemotaxis protein MotB [Escherichia coli HS]
 gi|157080453|gb|ABV20161.1| chemotaxis protein MotB [Escherichia coli E24377A]
 gi|169754694|gb|ACA77393.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|169889379|gb|ACB03086.1| MotB [Escherichia coli str. K-12 substr. DH10B]
 gi|170521873|gb|ACB20051.1| chemotaxis protein MotB [Escherichia coli SMS-3-5]
 gi|187768100|gb|EDU31944.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196]
 gi|188487592|gb|EDU62695.1| chemotaxis protein MotB [Escherichia coli 53638]
 gi|188999462|gb|EDU68448.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076]
 gi|189355159|gb|EDU73578.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401]
 gi|189360307|gb|EDU78726.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486]
 gi|189367322|gb|EDU85738.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501]
 gi|189370705|gb|EDU89121.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869]
 gi|189376024|gb|EDU94440.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508]
 gi|190901896|gb|EDV61646.1| chemotaxis protein MotB [Escherichia coli B7A]
 gi|192926846|gb|EDV81471.1| chemotaxis protein MotB [Escherichia coli E22]
 gi|192956770|gb|EDV87224.1| chemotaxis protein MotB [Escherichia coli E110019]
 gi|194412634|gb|EDX28930.1| chemotaxis protein MotB [Escherichia coli B171]
 gi|194422036|gb|EDX38040.1| chemotaxis protein MotB [Escherichia coli 101-1]
 gi|208725120|gb|EDZ74827.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206]
 gi|208731022|gb|EDZ79711.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045]
 gi|208740004|gb|EDZ87686.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042]
 gi|209158824|gb|ACI36257.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115]
 gi|209767220|gb|ACI81922.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767222|gb|ACI81923.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767224|gb|ACI81924.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767226|gb|ACI81925.1| chemotaxis protein MotB [Escherichia coli]
 gi|217318362|gb|EEC26789.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588]
 gi|218352187|emb|CAU97928.1| protein that enables flagellar motor rotation [Escherichia coli
           55989]
 gi|218432486|emb|CAR13379.1| protein that enables flagellar motor rotation [Escherichia coli
           UMN026]
 gi|238863319|gb|ACR65317.1| protein that enables flagellar motor rotation [Escherichia coli
           BW2952]
 gi|242377610|emb|CAQ32366.1| MotB protein, enables flagellar motor rotation, linking torque
           machinery to cell wall, subunit of Flagellar Motor
           Complex and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324198|gb|ACT28800.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973850|gb|ACT39521.1| flagellar motor protein MotB [Escherichia coli B str. REL606]
 gi|253978044|gb|ACT43714.1| flagellar motor protein MotB [Escherichia coli BL21(DE3)]
 gi|254592913|gb|ACT72274.1| protein that enables flagellar motor rotation [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754478|dbj|BAI25980.1| MotB protein [Escherichia coli O26:H11 str. 11368]
 gi|257759446|dbj|BAI30943.1| MotB protein [Escherichia coli O103:H2 str. 12009]
 gi|260448988|gb|ACX39410.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|290762944|gb|ADD56905.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615]
 gi|291323106|gb|EFE62534.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|291427589|gb|EFF00616.1| motB [Escherichia coli FVEC1412]
 gi|298278467|gb|EFI19981.1| chemotaxis protein motB [Escherichia coli FVEC1302]
 gi|299877767|gb|EFI85978.1| chemotaxis protein MotB [Escherichia coli MS 196-1]
 gi|300316579|gb|EFJ66363.1| chemotaxis protein MotB [Escherichia coli MS 175-1]
 gi|300357232|gb|EFJ73102.1| chemotaxis protein MotB [Escherichia coli MS 198-1]
 gi|300418857|gb|EFK02168.1| chemotaxis protein MotB [Escherichia coli MS 182-1]
 gi|300463077|gb|EFK26570.1| chemotaxis protein MotB [Escherichia coli MS 187-1]
 gi|300525219|gb|EFK46288.1| chemotaxis protein MotB [Escherichia coli MS 119-7]
 gi|300527571|gb|EFK48633.1| chemotaxis protein MotB [Escherichia coli MS 107-1]
 gi|300845775|gb|EFK73535.1| chemotaxis protein MotB [Escherichia coli MS 78-1]
 gi|301076125|gb|EFK90931.1| chemotaxis protein MotB [Escherichia coli MS 146-1]
 gi|306906168|gb|EFN36686.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|308120450|gb|EFO57712.1| chemotaxis protein MotB [Escherichia coli MS 145-7]
 gi|309702112|emb|CBJ01427.1| chemotaxis protein MotB (motility protein B) [Escherichia coli ETEC
           H10407]
 gi|310338218|gb|EFQ03307.1| chemotaxis protein motB [Escherichia coli 1827-70]
 gi|315061195|gb|ADT75522.1| protein that enables flagellar motor rotation [Escherichia coli W]
 gi|315136532|dbj|BAJ43691.1| chemotaxis protein motB [Escherichia coli DH1]
 gi|320188589|gb|EFW63251.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. EC1212]
 gi|320198585|gb|EFW73185.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B]
 gi|320641743|gb|EFX11131.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. G5101]
 gi|320657987|gb|EFX25749.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320658560|gb|EFX26254.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668458|gb|EFX35285.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. LSU-61]
 gi|323152620|gb|EFZ38896.1| chemotaxis protein motB [Escherichia coli EPECa14]
 gi|323174594|gb|EFZ60215.1| chemotaxis protein motB [Escherichia coli LT-68]
 gi|323186334|gb|EFZ71684.1| chemotaxis protein motB [Escherichia coli 1357]
 gi|323378228|gb|ADX50496.1| OmpA/MotB domain protein [Escherichia coli KO11]
 gi|323937148|gb|EGB33428.1| OmpA family protein [Escherichia coli E1520]
 gi|323940442|gb|EGB36633.1| OmpA family protein [Escherichia coli E482]
 gi|323961944|gb|EGB57543.1| OmpA family protein [Escherichia coli H489]
 gi|323972601|gb|EGB67804.1| OmpA family protein [Escherichia coli TA007]
 gi|324118949|gb|EGC12838.1| OmpA family protein [Escherichia coli E1167]
 gi|326342267|gb|EGD66048.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1044]
 gi|326343818|gb|EGD67580.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1125]
 gi|331039305|gb|EGI11525.1| chemotaxis protein MotB [Escherichia coli H736]
 gi|331049397|gb|EGI21469.1| chemotaxis protein MotB [Escherichia coli M718]
 gi|331063780|gb|EGI35691.1| chemotaxis protein MotB [Escherichia coli TA271]
 gi|331074234|gb|EGI45554.1| chemotaxis protein MotB [Escherichia coli H591]
 gi|332089624|gb|EGI94726.1| chemotaxis protein motB [Shigella boydii 5216-82]
 gi|332101290|gb|EGJ04636.1| flagellar motor rotation protein [Shigella sp. D9]
 gi|332343616|gb|AEE56950.1| chemotaxis protein MotB [Escherichia coli UMNK88]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|320178162|gb|EFW53139.1| Flagellar motor rotation protein MotB [Shigella boydii ATCC 9905]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 207 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266

Query: 341 RQG 343
           +Q 
Sbjct: 267 KQA 269



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YA FMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYAGFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|261344163|ref|ZP_05971807.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541]
 gi|282567758|gb|EFB73293.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541]
          Length = 306

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I I+D  N PMF   S+I  P    +L+ I  +L      ISI GHTD 
Sbjct: 137 LLIDMINDGLRIQIVDSANRPMFKVGSAIVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+ + A   NW LS DRA ++ + L+  G+ E +I ++ G A        + +   NRR
Sbjct: 197 LPYASEAYYSNWELSSDRANASRRELIMGGMEEQKILRVVGMASSIHLDKENGLAPINRR 256

Query: 334 IDILV 338
           I I+V
Sbjct: 257 ISIIV 261



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89
          +WKI YADFMT +MAFFLVMW+I+ +       I +YF  P    +   SK   D  NP
Sbjct: 25 AWKIAYADFMTAMMAFFLVMWLISISSPQELTKIAEYFRTPLSVAINPGSKS-GDATNP 82


>gi|331647484|ref|ZP_08348576.1| chemotaxis protein MotB [Escherichia coli M605]
 gi|330911699|gb|EGH40209.1| flagellar motor rotation protein MotB [Escherichia coli AA86]
 gi|331043208|gb|EGI15346.1| chemotaxis protein MotB [Escherichia coli M605]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|301018263|ref|ZP_07182776.1| chemotaxis protein MotB [Escherichia coli MS 69-1]
 gi|306814281|ref|ZP_07448447.1| flagellar motor protein MotB [Escherichia coli NC101]
 gi|300399773|gb|EFJ83311.1| chemotaxis protein MotB [Escherichia coli MS 69-1]
 gi|305852440|gb|EFM52891.1| flagellar motor protein MotB [Escherichia coli NC101]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|32490782|ref|NP_871036.1| flagellar motor protein MotB [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165988|dbj|BAC24179.1| motB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 326

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +  PMF        P    +++ +  VL      IS+ GHTD  P+ N  R
Sbjct: 145 GLRIEIIDSKKRPMFTTGGKEIAPYMRYIMRILAPVLNELPNRISLAGHTDNQPYINGER 204

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + L++ G+  D+I ++ G A+    +     +++ RRI I++  
Sbjct: 205 GYSNWELSADRANASRRELIEGGLMNDKILRVIGMANTMSDVNKHHHHASQRRISIIILT 264

Query: 341 RQ 342
           +Q
Sbjct: 265 KQ 266



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          ++N   I+I+ K +   + ++ GSWKI YADFMT +MAFFLVMW+++ +    ++ I  Y
Sbjct: 2  KKNSPMILIRWKKS-QHSGHHGGSWKIAYADFMTAMMAFFLVMWLLSTSTPQQREQIADY 60

Query: 69 F 69
          F
Sbjct: 61 F 61


>gi|281178957|dbj|BAI55287.1| chemotaxis protein MotB [Escherichia coli SE15]
          Length = 308

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV +
Sbjct: 207 GYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266

Query: 341 RQG 343
           +Q 
Sbjct: 267 KQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|238919361|ref|YP_002932876.1| OmpA family protein [Edwardsiella ictaluri 93-146]
 gi|238868930|gb|ACR68641.1| OmpA family protein [Edwardsiella ictaluri 93-146]
          Length = 270

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++   T  G+ I I+D +  PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 140 LMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIAPILNELPNKISLSGHTDD 199

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+ N  +   NW LS DRA ++ + LM  G+  ++I ++ G A   + + +   N+A N
Sbjct: 200 LPYANGEKGYSNWELSADRANASRRELMAGGLDSNKILRVVGMADT-MNLHNMAGNAAEN 258

Query: 332 RRIDILV 338
           RRI ILV
Sbjct: 259 RRISILV 265



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          I++KKK +     ++ GSWKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 9  ILVKKKRSSHAQASHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63


>gi|331683396|ref|ZP_08383997.1| chemotaxis protein MotB [Escherichia coli H299]
 gi|284921808|emb|CBG34881.1| chemotaxis protein MotB (motility protein B) [Escherichia coli 042]
 gi|331079611|gb|EGI50808.1| chemotaxis protein MotB [Escherichia coli H299]
          Length = 308

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|299133623|ref|ZP_07026817.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298591459|gb|EFI51660.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 275

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++K+   L  S   ++I G
Sbjct: 134 LSKHIMFEETKQGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAAPLRQSPLRVAIVG 193

Query: 271 HTDA---SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           HT +   SP      D + LS DRA +  Q+L ++G+    I  +SG A        DP 
Sbjct: 194 HTSSDFTSP--RPGYDAFDLSADRANAVRQILERAGLPSTHIFSVSGKADSEPLFPDDPS 251

Query: 328 NSANRRIDI 336
            +ANRR+ I
Sbjct: 252 LAANRRVTI 260


>gi|218699541|ref|YP_002407170.1| flagellar motor protein MotB [Escherichia coli IAI39]
 gi|218369527|emb|CAR17296.1| protein that enables flagellar motor rotation [Escherichia coli
           IAI39]
          Length = 308

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNCISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILV 338
            +LV
Sbjct: 261 SLLV 264



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|323968311|gb|EGB63718.1| OmpA family protein [Escherichia coli M863]
 gi|327253019|gb|EGE64673.1| chemotaxis protein motB [Escherichia coli STEC_7v]
          Length = 308

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +
Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +
Sbjct: 207 GYSNWELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266

Query: 341 RQG 343
           +Q 
Sbjct: 267 KQA 269



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   ++ ++K     T +  GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHPIIVVKRRKAKSHGTAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|126730120|ref|ZP_01745932.1| putative chemotaxis MotB protein [Sagittula stellata E-37]
 gi|126709500|gb|EBA08554.1| putative chemotaxis MotB protein [Sagittula stellata E-37]
          Length = 279

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 41/57 (71%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          IIIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  YF P
Sbjct: 10 IIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYFTP 66



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 17/151 (11%)

Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           K++   L G     +VAD +++ ++   T  G++I   +  +  +F   ++ P P    +
Sbjct: 131 KEVEEMLMGRGGESMVADELMEHIVTRVTDEGLVIEFFESEHARLFTGDAT-PTP----L 185

Query: 252 LQKIGEVLAHSTEVI----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSE 306
           L+ +  VLA ++EV+    +I GH  +SP   +ARD +W +S  RA +  ++L   GV E
Sbjct: 186 LEDLALVLARASEVVTNQMAIEGHVASSPLV-LARDPSWDVSGLRASAFRELLTGEGVPE 244

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +R+ +++ +A  R     +PMN+ N RI+++
Sbjct: 245 NRVKRVTSYA-DREPAHKNPMNARNNRIEVV 274


>gi|323977926|gb|EGB73012.1| OmpA family protein [Escherichia coli TW10509]
          Length = 308

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|268590004|ref|ZP_06124225.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131]
 gi|291314723|gb|EFE55176.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131]
          Length = 305

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I I+D  N PMF   S+   P    +L+ I  +L      ISI GHTD 
Sbjct: 137 LLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
             + N A   NW LS DRA ++ + L++ G+ E+++ ++ G A        D     NRR
Sbjct: 197 LAYANGANYSNWELSSDRANASRRELIRGGMDENKVLRVVGMASAIHLDKEDGFAPINRR 256

Query: 334 IDILV 338
           I I+V
Sbjct: 257 ISIIV 261



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFFLVMW+I+ +       I +YF  P    +   SK   D  NP
Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFRTPLSTAINPGSKS-GDATNP 82


>gi|74311761|ref|YP_310180.1| flagellar motor protein MotB [Shigella sonnei Ss046]
 gi|73855238|gb|AAZ87945.1| MotB [Shigella sonnei Ss046]
          Length = 308

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 261 SLLVLNKQA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|296101766|ref|YP_003611912.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056225|gb|ADF60963.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 309

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           +    +   NW LS DRA ++ + L+  G+ + ++ ++ G A         P ++ NRRI
Sbjct: 202 YATGEKGYSNWELSADRANASRRELVAGGLDDGKVLRVVGMAATMRVSDRGPDDAINRRI 261

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 262 SLLVLNQQA 270



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +I+KK+          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQSH-PIVIVKKRKHKGHGHGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKG 82
          +YF      L TA  G
Sbjct: 61 EYFR---TPLATAVSG 73


>gi|115526365|ref|YP_783276.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520312|gb|ABJ08296.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 270

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 68/127 (53%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            + K ++F+ T   + + I+D  + PMF + S++P   T V+++K+   L  +   ISI 
Sbjct: 129 EVTKNIIFQETSQSLALEIVDHFSRPMFRQGSAVPYDWTRVLIEKLAVPLKATALRISIV 188

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHT ++      RD + LS+ RA +  ++L + G+   ++  ++G        + DP  +
Sbjct: 189 GHTSSTETARGDRDVFELSVLRADAVRRILKQQGLPTSQLFVVAGKGDREPLFSDDPTMA 248

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 249 ANRRVTI 255


>gi|149376619|ref|ZP_01894379.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149359137|gb|EDM47601.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 260

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 77/297 (25%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           DD  +N   W I YADF+T+L AFF+VM+ +++ ++   K + +              G+
Sbjct: 8   DDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLT-----------GV 56

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           F   N P+RS Q                 +++G  +++   Q  E+ I    N   +E  
Sbjct: 57  F---NAPQRSFQ----------------PIEVGDQSRRSTPQAAEDVI----NPPVTEAP 93

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           +N                    S+N E                 R + L+ +A +++   
Sbjct: 94  QN-------------------PSMNAE----------------GRTEALRAMADQLALEF 118

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L+   +V     ET+   + +S+   RN+ +F    + P  +   V++KI  VL +  
Sbjct: 119 DELINQGVVT---LETSDEWLELSL---RNSLLFGSGDAEPHYDAFDVVEKIAAVLRNRD 172

Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             I + G TD  P    A   NW LS  R+ +  ++L   GV  +R++ + G+  H+
Sbjct: 173 NAIRVEGFTDNRPINTSAFPSNWELSAARSAAVVRMLSMEGVEAERLAAV-GYGEHQ 228


>gi|170737030|ref|YP_001778290.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169819218|gb|ACA93800.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 340

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
            T  G+ + + D     +F    ++P      +L K+G ++      + + GHTD+ P+R
Sbjct: 167 VTPMGLRVMLHDTEKRGVFVSGGAVPSEPFRPMLIKLGALMGSIGNPLFVMGHTDSVPYR 226

Query: 279 NI---ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           N    +R NW LS+DRA SA   +++ GV+ +++ ++ G A  R  + ++P  + NRRI+
Sbjct: 227 NSDSGSRSNWDLSVDRAMSARSWVLQGGVNSEQVMQVIGMA-DRAPLVNNPRAAINRRIE 285

Query: 336 ILV 338
            LV
Sbjct: 286 FLV 288



 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 35/52 (67%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          +I+K+ +  D   ++ G WK+ +ADF   L+  F+++W ++A D++T++ ++
Sbjct: 37 LIVKRPLRRDYDDDHDGGWKVAFADFCLALLCVFMLLWALSARDEETRRKMD 88


>gi|323948225|gb|EGB44213.1| OmpA family protein [Escherichia coli H120]
          Length = 308

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILVEDRQG 343
            +LV +++ 
Sbjct: 261 SLLVLNKEA 269



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|294635726|ref|ZP_06714192.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685]
 gi|291090938|gb|EFE23499.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685]
          Length = 332

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N  R
Sbjct: 148 GLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIAPILNELPNKISLSGHTDDLPYANGER 207

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332
              NW LS DRA ++ + L+  G++ ++I ++ G A        D MN        + NR
Sbjct: 208 GYSNWELSADRANASRRELVIGGLAGNKILRVVGMA--------DTMNLRHLAGNAAVNR 259

Query: 333 RIDILV 338
           RI ILV
Sbjct: 260 RISILV 265



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          I++KKK +     ++ G+WKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 9  ILVKKKRSGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63


>gi|253990166|ref|YP_003041522.1| flagellar motor protein MotB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781616|emb|CAQ84779.1| chemotaxis motb protein [Photorhabdus asymbiotica]
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I IID+ N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331
             + N  R   NW LS DRA ++ + L+  G+ E++I ++ G A   RLK   D  +  N
Sbjct: 197 LKYANGERGYSNWELSADRANASRRELLIGGLDEEKILRVVGMASTVRLK-QEDASSPVN 255

Query: 332 RRIDILVEDRQG 343
           RRI ILV ++Q 
Sbjct: 256 RRISILVLNKQA 267



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +I  K+   +D  ++ GSWKI YADFMT +MAFFLVMW++  +       I +YF
Sbjct: 8  VIKVKRRKRNDIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYF 62


>gi|296534445|ref|ZP_06896882.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957]
 gi|296265230|gb|EFH11418.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957]
          Length = 143

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 6  DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          DKNQ     I+++++    D  ++ G+WKI YADF+T +MAFFL+MW+INAT D  +  +
Sbjct: 5  DKNQRT--VIVVRREEGGGDGGHHGGAWKIAYADFVTAMMAFFLLMWLINATSDAQRVGL 62

Query: 66 EQYFNP 71
            YF P
Sbjct: 63 ADYFAP 68


>gi|239781764|pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form I)
          Length = 210

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N P F   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 55  IDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPNRISLAGHTDDFP 114

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 115 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGXAATXRLSDRGPDDAINRRI 174

Query: 335 DILVEDRQ 342
            +LV ++Q
Sbjct: 175 SLLVLNKQ 182


>gi|89056663|ref|YP_512114.1| chemotaxis protein MotB [Jannaschia sp. CCS1]
 gi|88866212|gb|ABD57089.1| chemotaxis protein MotB [Jannaschia sp. CCS1]
          Length = 277

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 34/41 (82%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          G+WK+ YADF+T +MAFF++MW++NAT ++ +K +  YF+P
Sbjct: 25 GAWKVAYADFVTAMMAFFMLMWLLNATTENQRKGLADYFSP 65



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G++I +  +   P+FD  + +P P    +   + ++       +++  H  A P   
Sbjct: 155 TDEGLVIEVFSRPGQPIFDPDTGLPQPWLEELTVSMADLFGTVLNRVAVEAHIAAEPLVR 214

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                W+ + +RA     +L   G++  RI++++G +  R    S P+   N RI++++
Sbjct: 215 TTESGWQRTTERAQIIRALLEDGGLNAQRIARVTGHS-DREPFVSPPIAPRNDRIEVIL 272


>gi|251789151|ref|YP_003003872.1| flagellar motor protein MotB [Dickeya zeae Ech1591]
 gi|247537772|gb|ACT06393.1| OmpA/MotB domain protein [Dickeya zeae Ech1591]
          Length = 376

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331
           + +    R   NW LS DRA ++ + L+  G+++ ++ ++ G A    LK A    ++ N
Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAIN 254

Query: 332 RRIDILVEDRQ 342
           RRI ++V ++Q
Sbjct: 255 RRISLVVLNKQ 265



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF   
Sbjct: 4  QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63

Query: 73 GKNLMTASKGIFDEQNP 89
           K  +T+   + D  NP
Sbjct: 64 LKIAITSGPKMSDASNP 80


>gi|300722595|ref|YP_003711885.1| flagella protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629102|emb|CBJ89687.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I IID+ N PMF   S+        +LQ I  +L      IS+ GHTD+
Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILQAIAPILNDIPNKISLSGHTDS 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331
             + N  R   NW LS DRA ++ + L+  G+ E +I ++ G A    ++   DP    N
Sbjct: 197 LKYANGQRGYSNWELSSDRANASRRELLVGGLDEVKILRVVGMASTVSMQKGIDPNAPVN 256

Query: 332 RRIDILVEDRQG 343
           RRI I+V +++ 
Sbjct: 257 RRISIIVLNKEA 268



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADFMT +MAFFLVMW+I+        +I +YF
Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLISIASPQELTSIAEYF 62


>gi|290474940|ref|YP_003467824.1| flagellar protein [Xenorhabdus bovienii SS-2004]
 gi|289174257|emb|CBJ81046.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Xenorhabdus bovienii SS-2004]
          Length = 333

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK----GVLFETTRTGILISIIDQRNTPMFDKSSS 242
           K K+RL  L +++   +   + D  +K     +L +    G+ I IID+ N PMF   S+
Sbjct: 108 KEKRRLNRLHQQLDQLI---ITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMFMIGSA 164

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
                   +LQ I  +L      +S+ GHTD   + N  R   NW LS DRA ++ + L+
Sbjct: 165 KVESYMRDILQAIAPILNEIPNKVSLSGHTDNLQYANGQRGYSNWELSADRANASRRELL 224

Query: 301 KSGVSEDRISKISGFAHH-RLKIASDPMNSANRRIDILV 338
             G+ E +I ++ G A    ++   DP    NRRI I+V
Sbjct: 225 NGGLDEVKILRVVGMASTVSMQKGIDPNAPVNRRISIVV 263



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADFMT +MAFFLVMW+++        +I  YF
Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLLSIASPQELTSIADYF 62


>gi|257095366|ref|YP_003169007.1| flagellar motor protein MotD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047890|gb|ACV37078.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 276

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 87/157 (55%), Gaps = 12/157 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K++++++++AK+I   ++ L+    V+  + ET+R G+ I I D   + +F    ++  P
Sbjct: 93  KQREKMRNVAKEILEVMAPLIEQGKVR--VLETSR-GVTIEIND---SILFSPGQAVLQP 146

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305
           + I  +Q + EVL  +   I+I GHTD  P +N     NW LS  RA +  ++   +G++
Sbjct: 147 QLIKAMQSVAEVLVAADFPITIEGHTDNVPIKNTQFPSNWELSAVRATTVLRLFADAGIA 206

Query: 306 EDRISKISGFAHHR---LKIASDPMNSANRRIDILVE 339
             R++ I G+A  R     + +D   + NRR+ IL++
Sbjct: 207 AGRLTAI-GYADTRPVEPNLLAD-GRARNRRVSILID 241



 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+T+L AFF+VM+ +++ ++             GK  + +S  +   +N P  
Sbjct: 16  WLVSYADFITLLFAFFVVMYALSSVNE-------------GKYRILSSSMVSAFRNVPVN 62

Query: 93  SS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           SS Q  + +     +TK S+  K     ++KQ +++ N
Sbjct: 63  SSGQTPMVVPTPASVTKASLASKAQEAVKQKQREKMRN 100


>gi|311279213|ref|YP_003941444.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308748408|gb|ADO48160.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 309

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           KKR+ Q+  KKI   L  L+ AD  +K +      +  + G+ I IID +N PMF   S+
Sbjct: 108 KKRMEQNRLKKIRGELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
              P    +L+ I  VL      IS+ GHTD   + N  R   NW LS +RA ++ + L+
Sbjct: 168 EVEPYMRDILRAIAPVLNEIPNKISLSGHTDDYQYANGDRGYSNWELSAERANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVEDRQ 342
             G+ + ++ ++ G A + +K+     + A NRRI +LV + Q
Sbjct: 228 AGGLDDGKVLRVVGMA-NTMKLQEHGGDDAINRRISLLVLNNQ 269



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   ++++++   +      GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQSHP-IVVVRRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYF 69
          +YF
Sbjct: 61 EYF 63


>gi|114777572|ref|ZP_01452553.1| motb protein [Mariprofundus ferrooxydans PV-1]
 gi|114552043|gb|EAU54560.1| motb protein [Mariprofundus ferrooxydans PV-1]
          Length = 232

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 35/195 (17%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKI-------LAMKRKKRLQDLAKKISSTLSGLVADNI 211
           K+  +  S  K E   +PPL  +K+       LAM++  R         + +   + D+ 
Sbjct: 56  KAVSVLNSGTKTELQIIPPLQMQKLISPRELMLAMRQNSR---------AIMKNSIMDHK 106

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V+GV+       + + I D     +FD+ S++  PE++  L K+ ++LA S   I ++GH
Sbjct: 107 VRGVILNDR---LYLRIPD---AILFDRGSAVLKPESVKTLVKLAQMLAMSPGNIRVQGH 160

Query: 272 TDASPFRNIARDN------WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS 324
           T+A    NI  DN      W LSL RA S   +L   GVS  R+S ++G+   + +   +
Sbjct: 161 TNA----NIDLDNSAFDDPWSLSLARAASVLHILEDEGVSPTRLS-LAGYGPSQPISTEA 215

Query: 325 DPMN-SANRRIDILV 338
            P   S NRR++I+V
Sbjct: 216 TPFGRSKNRRVEIMV 230


>gi|26248156|ref|NP_754196.1| flagellar motor protein MotB [Escherichia coli CFT073]
 gi|227885682|ref|ZP_04003487.1| flagellar motor protein MotB [Escherichia coli 83972]
 gi|300994031|ref|ZP_07180650.1| chemotaxis protein MotB [Escherichia coli MS 45-1]
 gi|301050754|ref|ZP_07197612.1| chemotaxis protein MotB [Escherichia coli MS 185-1]
 gi|26108560|gb|AAN80763.1|AE016762_16 Chemotaxis motB protein [Escherichia coli CFT073]
 gi|227837255|gb|EEJ47721.1| flagellar motor protein MotB [Escherichia coli 83972]
 gi|300297571|gb|EFJ53956.1| chemotaxis protein MotB [Escherichia coli MS 185-1]
 gi|300406399|gb|EFJ89937.1| chemotaxis protein MotB [Escherichia coli MS 45-1]
 gi|307553906|gb|ADN46681.1| flagellar motor rotation protein [Escherichia coli ABU 83972]
 gi|315290318|gb|EFU49694.1| chemotaxis protein MotB [Escherichia coli MS 153-1]
          Length = 308

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILV 338
            +LV
Sbjct: 261 SLLV 264



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|188584558|ref|YP_001928003.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179348056|gb|ACB83468.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 277

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+   +R G+ +SI+DQ    MF + SS P   T  +L+++   L   +  I++ G
Sbjct: 135 LSKNVIIAPSRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTLMKLSNRIAVTG 194

Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            T  +  R   RD    W LS +RA S   VL  +G+ +DR + ++G A        +P 
Sbjct: 195 FTATA--RPGTRDTAPPWELSANRALSVRDVLANAGLPDDRFASVAGKADTEPMFPDNPY 252

Query: 328 NSANRRIDI 336
            +ANRR+ +
Sbjct: 253 LAANRRVTV 261


>gi|170769416|ref|ZP_02903869.1| chemotaxis protein MotB [Escherichia albertii TW07627]
 gi|170121740|gb|EDS90671.1| chemotaxis protein MotB [Escherichia albertii TW07627]
          Length = 308

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N  +
Sbjct: 147 GLRIQIIDSQNRPMFKIGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYANGEK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS +RA ++ + L   G+ + ++ ++ G A         P ++ NRRI +LV +
Sbjct: 207 GYSNWELSTERANASRRELAAGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLN 266

Query: 341 RQG 343
           +Q 
Sbjct: 267 KQA 269



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   ++ ++K       +  GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQTHPIIVVKRRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGNRISNSESP 82


>gi|294492517|gb|ADE91273.1| chemotaxis protein MotB [Escherichia coli IHE3034]
          Length = 308

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILV 338
            +LV
Sbjct: 261 SLLV 264



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|118588413|ref|ZP_01545822.1| probable chemotaxis protein [Stappia aggregata IAM 12614]
 gi|118439119|gb|EAV45751.1| probable chemotaxis protein [Stappia aggregata IAM 12614]
          Length = 285

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           I   ++ E T  G+ I ++DQ    MF + S  P   T  ++ K+  VL+     I I G
Sbjct: 144 ISSNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAKMAPVLSQMPNRIEITG 203

Query: 271 HTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           HT A     + +   W LS +RA  A Q+L + GV +++   + G A       +DP  +
Sbjct: 204 HTTAGRQSIDPSYTGWELSSERANIARQILSEYGVPDNQFYSVVGKADTEPLFPNDPYLA 263

Query: 330 ANRRIDILV 338
           ANRRI IL+
Sbjct: 264 ANRRIGILL 272


>gi|91211113|ref|YP_541099.1| flagellar motor protein MotB [Escherichia coli UTI89]
 gi|110642005|ref|YP_669735.1| flagellar motor protein MotB [Escherichia coli 536]
 gi|117624039|ref|YP_852952.1| flagellar motor protein MotB [Escherichia coli APEC O1]
 gi|191172996|ref|ZP_03034530.1| chemotaxis protein MotB [Escherichia coli F11]
 gi|215487100|ref|YP_002329531.1| flagellar motor protein MotB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218558752|ref|YP_002391665.1| flagellar motor protein MotB [Escherichia coli S88]
 gi|218689885|ref|YP_002398097.1| flagellar motor protein MotB [Escherichia coli ED1a]
 gi|237705847|ref|ZP_04536328.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA]
 gi|300935867|ref|ZP_07150825.1| chemotaxis protein MotB [Escherichia coli MS 21-1]
 gi|300982219|ref|ZP_07175931.1| chemotaxis protein MotB [Escherichia coli MS 200-1]
 gi|312967092|ref|ZP_07781310.1| chemotaxis protein motB [Escherichia coli 2362-75]
 gi|331657937|ref|ZP_08358899.1| chemotaxis protein MotB [Escherichia coli TA206]
 gi|91072687|gb|ABE07568.1| chemotaxis MotB protein [Escherichia coli UTI89]
 gi|110343597|gb|ABG69834.1| chemotaxis MotB protein [Escherichia coli 536]
 gi|115513163|gb|ABJ01238.1| chemotaxis MotB protein [Escherichia coli APEC O1]
 gi|190906707|gb|EDV66312.1| chemotaxis protein MotB [Escherichia coli F11]
 gi|215265172|emb|CAS09560.1| protein that enables flagellar motor rotation [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365521|emb|CAR03248.1| protein that enables flagellar motor rotation [Escherichia coli
           S88]
 gi|218427449|emb|CAV17777.1| protein that enables flagellar motor rotation [Escherichia coli
           ED1a]
 gi|222033636|emb|CAP76377.1| chemotaxis protein motB [Escherichia coli LF82]
 gi|226900604|gb|EEH86863.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA]
 gi|300307289|gb|EFJ61809.1| chemotaxis protein MotB [Escherichia coli MS 200-1]
 gi|300458979|gb|EFK22472.1| chemotaxis protein MotB [Escherichia coli MS 21-1]
 gi|307626628|gb|ADN70932.1| flagellar motor protein MotB [Escherichia coli UM146]
 gi|312288556|gb|EFR16458.1| chemotaxis protein motB [Escherichia coli 2362-75]
 gi|312946487|gb|ADR27314.1| flagellar motor protein MotB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315286597|gb|EFU46030.1| chemotaxis protein MotB [Escherichia coli MS 110-3]
 gi|315296507|gb|EFU55804.1| chemotaxis protein MotB [Escherichia coli MS 16-3]
 gi|320194396|gb|EFW69027.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327]
 gi|323186771|gb|EFZ72091.1| chemotaxis protein motB [Escherichia coli RN587/1]
 gi|323952390|gb|EGB48263.1| OmpA family protein [Escherichia coli H252]
 gi|323956291|gb|EGB52034.1| OmpA family protein [Escherichia coli H263]
 gi|324007255|gb|EGB76474.1| chemotaxis protein MotB [Escherichia coli MS 57-2]
 gi|324013535|gb|EGB82754.1| chemotaxis protein MotB [Escherichia coli MS 60-1]
 gi|331056185|gb|EGI28194.1| chemotaxis protein MotB [Escherichia coli TA206]
          Length = 308

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + +  +   NW LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI
Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260

Query: 335 DILV 338
            +LV
Sbjct: 261 SLLV 264



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82


>gi|119476294|ref|ZP_01616645.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
 gi|119450158|gb|EAW31393.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
          Length = 344

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 82/314 (26%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP--P 90
           W + YADF+T+L AFF+VM+ I+  ++   K + Q  +            +F  Q P  P
Sbjct: 16  WLVSYADFITLLFAFFVVMYSISQVNEGKYKVLSQTLSE-----------VFARQGPGVP 64

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           ER+        +D          +IG   +      +E     L      ++  +S    
Sbjct: 65  ERT--------LD--------PFQIGDVVKSNPQSFIE-----LEAENDGDNSGSSANEQ 103

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE+G                    LP                + + +KI   L GL+  N
Sbjct: 104 SERGA-------------------LP-------------AEFEQINQKIDEALGGLLKSN 131

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMF---DKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            V      T R       ++ +++ +F   D + S+P    + VL+ I  +L   T  I 
Sbjct: 132 QV------TVRGSEKWLEVELKSSLLFGSGDSTLSVP---AVGVLESIASILKDQTNPIR 182

Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           + G TD  P  ++    NW LS  RA +  +  ++ G+S DR++ I G+  H+    +D 
Sbjct: 183 VEGFTDNQPINSVRYPSNWELSAGRASAVVKFFIEEGLSADRLAAI-GYGEHQPVTDNDS 241

Query: 327 MN--SANRRIDILV 338
               + NRR+ +++
Sbjct: 242 EEGRAENRRVVLMI 255


>gi|292489120|ref|YP_003532007.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430]
 gi|292900239|ref|YP_003539608.1| motility protein B [Erwinia amylovora ATCC 49946]
 gi|291200087|emb|CBJ47213.1| chemotaxis protein (motility protein B) [Erwinia amylovora ATCC
           49946]
 gi|291554554|emb|CBA22155.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora
           CFBP1430]
 gi|312173278|emb|CBX81533.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora
           ATCC BAA-2158]
          Length = 302

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N    ++   T  G++I I D +  PMF   S  P      +LQ +  +L      +S+ 
Sbjct: 132 NFKSNLMLTLTDDGLMIQITDSQERPMFKTGSEAPESYMNGILQALVPLLKELPNSLSLT 191

Query: 270 GHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP 326
           GHTD+  +   +    NW LS  RA +A +VL+ +G+ +DRI ++ G    R+ +A    
Sbjct: 192 GHTDSLAYAGGSGGYSNWELSTGRANAARRVLINAGLDDDRILRVIG-TGSRMGLADISA 250

Query: 327 MNSANRRIDILV 338
            N  NRRI +LV
Sbjct: 251 DNPMNRRISVLV 262



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89
          G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF  P    +   +K  F E   
Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESII 82

Query: 90 P 90
          P
Sbjct: 83 P 83


>gi|225874275|ref|YP_002755734.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
 gi|225793995|gb|ACO34085.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
          Length = 270

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+ I +++ +    FD  SS        +L+ + + L      I+I G+TDA P+  
Sbjct: 116 TPEGLRIELLEAKGGTFFDSGSSKLSAGGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPG 175

Query: 280 I-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA +A +++  SG+   +++++ G+    L++ + P +  NRRI I+V
Sbjct: 176 KDGYTNWDLSADRANAARRLMQASGLHAGQVAEVRGYGDQNLRLPNKPFDPTNRRITIVV 235

Query: 339 E 339
            
Sbjct: 236 H 236



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           I+I+KKV+     ++ G+WK+ YADF+T +M+ F+V+W++N T    KK I  YF
Sbjct: 7  IIVIRKKVSHGG--HHGGAWKVAYADFVTAMMSLFIVLWLMN-TSTPIKKIIAGYF 59


>gi|170741247|ref|YP_001769902.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195521|gb|ACA17468.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 277

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K VL   T  G+ +S++DQ    MF   S+ P   T  VL+++   +   +  I+I G
Sbjct: 135 LSKNVLIHETARGLDVSLVDQDGRSMFPDGSTRPNDRTRQVLERLAPAIRRMSNKIAISG 194

Query: 271 HTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           +T A+ P        W LS  RA S  ++L  +GV ++R + +SG A        +P  +
Sbjct: 195 YTAATRPGLRAPAPPWELSAGRAISVREILASNGVPDERFTVVSGKADTEPLFPDNPYIA 254

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 255 ANRRVTI 261


>gi|307944455|ref|ZP_07659795.1| OmpA/MotB [Roseibium sp. TrichSKD4]
 gi|307772204|gb|EFO31425.1| OmpA/MotB [Roseibium sp. TrichSKD4]
          Length = 284

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           I   ++ E +  G+ I ++DQ    MF + S  P   T  +L K+  VL+     + I G
Sbjct: 143 ISSNIILEESEEGLNIMLVDQDGRSMFREGSKYPYETTRRLLAKMAPVLSQMPNRVEITG 202

Query: 271 HTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT A   R++  A   W LS +RA  A Q+L + GV  ++   + G +       +DP  
Sbjct: 203 HTTAG-GRSVDPAYTGWDLSAERANVARQILAEYGVPSNQFYAVIGKSDSEPLFPNDPYL 261

Query: 329 SANRRIDILV 338
           ++NRR++IL+
Sbjct: 262 ASNRRVEILL 271


>gi|330861237|emb|CBX71488.1| hypothetical protein YEW_CQ10830 [Yersinia enterocolitica W22703]
          Length = 89

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3  HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +++ +   D  +P
Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83


>gi|157376457|ref|YP_001475057.1| flagellar motor protein MotB [Shewanella sediminis HAW-EB3]
 gi|157318831|gb|ABV37929.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 325

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 144/338 (42%), Gaps = 42/338 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73
           + KK   D  P     W   +AD M++LM FF+++   +  D    K I       FG  
Sbjct: 1   MAKKEKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 74  -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QY 124
                K++   +  I  E  P  PE +    I+   +E +T+  ++ + G  +     Q 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNE-MTEPVLEYQAGDDDSSGGVQQ 119

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           QR E      S + Q E           + K   KS    K+ ++EE       SK +  
Sbjct: 120 QRGEQRGGEASATAQEEA----------ESKSESKSEAEAKAKSEEE-------SKAQAA 162

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A   + ++ D  KK++  L+  + D  ++    E+    I+I I   R    F   S   
Sbjct: 163 A---QDQINDEVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFL 213

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303
            P    V++++GE+L     ++++ GHTD     N +   NW LS  RA +    L++  
Sbjct: 214 QPRFKPVIRRVGELLKDVPGIVTVSGHTDDMRISNELYSSNWDLSSKRAVAVAHELIRVK 273

Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339
             + R  K+ G A+    +A+D P N A NRR++I +E
Sbjct: 274 GFDQRRMKVVGMANSDPLVANDSPGNRARNRRVEIAIE 311


>gi|293395565|ref|ZP_06639848.1| chemotaxis MotB protein [Serratia odorifera DSM 4582]
 gi|291421884|gb|EFE95130.1| chemotaxis MotB protein [Serratia odorifera DSM 4582]
          Length = 330

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD  P+    R
Sbjct: 144 GLRIQIIDSQNRPMFTTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDLPYATGER 203

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NRRI ILV +
Sbjct: 204 YYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITILVLN 263

Query: 341 RQ 342
           +Q
Sbjct: 264 KQ 265



 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          ++N   I+++K+ A     ++ GSWKI YADFMT +MAFFLVMW++          I +Y
Sbjct: 2  KQNHPVILVRKRKA-HQVAHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60

Query: 69 F-NPFGKNLMTASK 81
          F  P    L T +K
Sbjct: 61 FRTPLKVALTTGNK 74


>gi|220924426|ref|YP_002499728.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219949033|gb|ACL59425.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 277

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K VL   T  G+ +S++DQ N  MF   S+ P   T  VL+++   +   +  I++ G
Sbjct: 135 LSKNVLIHETERGLDVSLVDQDNRSMFPDGSTRPNDRTRQVLERLAPTIRSLSNRIAVAG 194

Query: 271 HTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           +T A+          W LS  RA S  ++L  +G+ +DR + +SG A        +P  +
Sbjct: 195 YTAATRPGRRPPAPPWELSTGRAISVREILAGAGIPDDRFAVVSGKADTEPLFPDNPYIA 254

Query: 330 ANRRIDI 336
           ANRR+ I
Sbjct: 255 ANRRVTI 261


>gi|212709470|ref|ZP_03317598.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM
           30120]
 gi|212687808|gb|EEB47336.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM
           30120]
          Length = 312

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I I+D  N PMF   S+   P    +L+ I  +L      ISI GHTD 
Sbjct: 137 LLIDMINDGLRIQIVDSANRPMFKVGSATVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            P+ + A   NW LS DRA ++ + L+  G+ E ++ ++ G A        + +   NRR
Sbjct: 197 LPYASEAYYSNWELSSDRANASRRELIMGGMDERKVLRVVGMASSIHLDKENGLAPVNRR 256

Query: 334 IDILV 338
           I I+V
Sbjct: 257 ISIIV 261



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          Q I +KKK       +  G+WKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 7  QIIRVKKKGGHQQHAHG-GAWKIAYADFMTAMMAFFLVMWLISISSPQELTKIAEYF 62


>gi|168234012|ref|ZP_02659070.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205331986|gb|EDZ18750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 309

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+  HTD  P
Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLARHTDDFP 201

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI
Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261

Query: 335 DILVEDRQG 343
            +LV ++Q 
Sbjct: 262 SLLVLNKQA 270



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83


>gi|126734128|ref|ZP_01749875.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2]
 gi|126716994|gb|EBA13858.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2]
          Length = 278

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          IIK+K  I    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  YF P
Sbjct: 10 IIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADYFAP 65



 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + I + L G     +++D  ++ ++   T  G++I I D     +F   +++P P T  +
Sbjct: 128 RDIEAVLMGQGGESMLSDQALRHIITRLTDEGLVIEIYDLPEVTLFVDDTTVPNPVTAEI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
              +  +    +  ++++GH  A     I    W LS  RA     +L   G+   RI +
Sbjct: 188 ATIMARMFTTVSNDVAVKGHLSAKSPLQIDNPVWELSTGRAVQMRLMLQSGGLDPMRIVR 247

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
            SG A  R     D     N RI++++
Sbjct: 248 QSG-AGDREPAVRDATAPRNNRIEVIL 273


>gi|85715414|ref|ZP_01046396.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85697835|gb|EAQ35710.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 276

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF + S  P   T +++ K+   L  +   ISI G
Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIGKLAAPLTATPFRISITG 194

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT ++  P R+   D + LS DRA    Q+L + G+    I  +SG +        DP  
Sbjct: 195 HTASNFVPMRS-DYDGFDLSADRANVVRQILEQEGLPPSHIFAVSGKSDSMPLFPDDPSL 253

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 254 AANRRVTI 261


>gi|23013133|ref|ZP_00053071.1| COG1360: Flagellar motor protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 344

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          E  Q IIIK  KKVA      + G+WK+ YADF+T +MAFFL++W++NA  ++    +  
Sbjct: 3  EGGQQIIIKRVKKVAGG---AHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSN 59

Query: 68 YFNP 71
          YF P
Sbjct: 60 YFAP 63


>gi|157371226|ref|YP_001479215.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568]
 gi|157322990|gb|ABV42087.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 321

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L      G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 136 LLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDD 195

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+    R   NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NR
Sbjct: 196 IPYATGERGYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINR 255

Query: 333 RIDILVEDRQ 342
           RI +LV ++Q
Sbjct: 256 RITVLVLNKQ 265



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          ++N   ++++K+ +     ++ GSWKI YADFMT +MAFFLVMW++          I +Y
Sbjct: 2  KQNHPVVLVRKRKS-HQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60

Query: 69 F 69
          F
Sbjct: 61 F 61


>gi|163854227|ref|YP_001642270.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|218533172|ref|YP_002423988.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240141687|ref|YP_002966167.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1]
 gi|163665832|gb|ABY33199.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
 gi|218525475|gb|ACK86060.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240011664|gb|ACS42890.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1]
          Length = 277

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+    R G+ +SI+DQ    MF + SS P   T  +L+++   L      I++ G
Sbjct: 135 LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTLMKLPNRIAVTG 194

Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            T  +  R   RD    W LS +RA S   VL  +G+ +DR + ++G A        +P 
Sbjct: 195 FTATT--RPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADTEPMFPDNPY 252

Query: 328 NSANRRIDI 336
            +ANRR+ +
Sbjct: 253 LAANRRVTV 261


>gi|188533603|ref|YP_001907400.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99]
 gi|188028645|emb|CAO96507.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99]
          Length = 343

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          + ND+ I++ K+   +    + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2  KHNDRPIVLVKRKKANKHSGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +T  +   D  +P
Sbjct: 62 FKTPLKVAITGGQRSSDSSSP 82



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISMAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+    R   NW LS DRA ++ + L+  G+S  ++ ++ G +   +K+ +   N A N
Sbjct: 199 FPYAGGERGYSNWELSADRANASRRELVAGGLSSGKMLRVVGMSDT-MKLKNRGANDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264


>gi|238796916|ref|ZP_04640420.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969]
 gi|238719176|gb|EEQ10988.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969]
          Length = 320

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+LI IID +  PMF   S    P   ++LQ +  VL      I++ GHTD+ P+ N
Sbjct: 110 TDDGLLIQIIDSQERPMFKVGSRELEPYMRIILQALVPVLNDLPNKINLTGHTDSLPYVN 169

Query: 280 --IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------- 330
                 NW LS DRA ++ + L+  G+++++  ++ G A        D MN A       
Sbjct: 170 GEAGYSNWELSSDRANASRRTLVSGGLADNKFLRVIGSA--------DMMNLANVKSDAP 221

Query: 331 -NRRIDILV 338
            NRRI ILV
Sbjct: 222 INRRISILV 230



 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          MT +MAFFLVMW+++++    ++ I  YF
Sbjct: 1  MTAMMAFFLVMWLLSSSTPLQREQIADYF 29


>gi|270262419|ref|ZP_06190690.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13]
 gi|270043103|gb|EFA16196.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13]
          Length = 321

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD  P+    R
Sbjct: 144 GLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGER 203

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NRRI +LV +
Sbjct: 204 GYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLN 263

Query: 341 RQ 342
           +Q
Sbjct: 264 KQ 265



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          ++N   ++++K+ +     ++ GSWKI YADFMT +MAFFLVMW++          I +Y
Sbjct: 2  KQNHPVVLVRKRKS-HQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60

Query: 69 F-NPFGKNLMTASK 81
          F  P    L T  K
Sbjct: 61 FRTPLKVALTTGDK 74


>gi|116328262|ref|YP_797982.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116121006|gb|ABJ79049.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 340

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +S+ K L+  +KK L  LA + ++ L   + D I KG +        L+  ID R +  F
Sbjct: 176 ISRLKNLSENQKKELDRLADQ-ANELENKLGDEIKKGQIRLKRFHNRLVINIDDRIS--F 232

Query: 238 DKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           D  S+    + +  L KI E+L  +   +I I GHTD  P R     DNW+LS +RA S 
Sbjct: 233 DSGSAELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSV 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
               ++S + + R   ++G+   +  +++D P N A NRR+DI+V
Sbjct: 293 LHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVV 337


>gi|307546933|ref|YP_003899412.1| flagellar motor protein MotB [Halomonas elongata DSM 2581]
 gi|307218957|emb|CBV44227.1| flagellar motor protein MotB [Halomonas elongata DSM 2581]
          Length = 317

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           ++++  +DL ++I   +    AD  +K +     F+ T  G+ I ++D    PMF+  S 
Sbjct: 111 RQRRAFRDLQRRIEMAID---ADPDLKQLRDQLRFDMTPEGLRIQLVDTEQRPMFELGSD 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLM 300
              P    +L+ +  +L      +SI GHTD+  + N      NW LS  RA ++ + L+
Sbjct: 168 RVAPYMRDLLRLMAPLLNELPNDLSISGHTDSLAYLNGFQGYGNWELSSARANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             G+   ++ +++GFA   +   ++P +  NRRI++LV
Sbjct: 228 AGGLDSAKLLRVAGFADQVVMPDTEPSDPVNRRIELLV 265



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          GSWKI  ADFMT LMA FLVMWI++      ++ + +YF+
Sbjct: 24 GSWKIALADFMTALMALFLVMWILSTASRQEREGVAEYFS 63


>gi|116330986|ref|YP_800704.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124675|gb|ABJ75946.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 340

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +S+ K L+  +KK L  LA + ++ L   + D I KG +        L+  ID R +  F
Sbjct: 176 ISRLKNLSENQKKELDRLADQ-ANELENKLGDEIKKGQIRLKRFHNRLVINIDDRIS--F 232

Query: 238 DKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           D  S+    + +  L KI E+L  +   +I I GHTD  P R     DNW+LS +RA S 
Sbjct: 233 DSGSAELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSV 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
               ++S + + R   ++G+   +  +++D P N A NRR+DI+V
Sbjct: 293 LHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVV 337


>gi|254487666|ref|ZP_05100871.1| chemotaxis protein MotB [Roseobacter sp. GAI101]
 gi|214044535|gb|EEB85173.1| chemotaxis protein MotB [Roseobacter sp. GAI101]
          Length = 280

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          N   +IIK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  YF 
Sbjct: 8  NAAPVIIKRKKVVKGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADYFT 67

Query: 71 P 71
          P
Sbjct: 68 P 68



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)

Query: 194 DLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +L K + + L G     +V DNI + V+   T  G++I + D  + P+F      P    
Sbjct: 130 ELFKVVDAQLMGRGGESMVMDNIARHVITRQTEEGMVIELFDVEDVPLFKNGGDQPTQ-- 187

Query: 249 IVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             +L+++ EV+  ++++    I++  H  ++P   +    W LS  R      +L K GV
Sbjct: 188 --MLRELLEVIVDASKIVTNKIAVAAHVRSNPIVAVENPVWDLSAKRGTQTRILLEKLGV 245

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              RI +++GFA  R   A D M+  N R++I++
Sbjct: 246 KPARIERVTGFA-DRKPAAIDTMDVRNNRVEIIL 278


>gi|92117049|ref|YP_576778.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91799943|gb|ABE62318.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 276

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF   S  P   T ++++K+   L  +   ISI G
Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFADGSREPYERTRMLIRKLAAPLKATPLRISITG 194

Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT ++  P R+   D + LS DRA +  Q+L + G+    I  ++G +        DP  
Sbjct: 195 HTASNFIPTRS-DYDGFDLSADRANAVRQILEREGLPPSHIFAVAGKSDSMPLFPDDPSL 253

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 254 AANRRVTI 261


>gi|37525779|ref|NP_929123.1| flagellar motor protein MotB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785208|emb|CAE14143.1| chemotaxis protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 333

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L +    G+ I IID+ N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMVGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDD 196

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331
             + N  R   NW LS DRA ++ + L+  G+ E +I ++ G A   RLK   D     N
Sbjct: 197 LKYANGERGYSNWELSADRANASRRELLIGGLDEVKILRVVGMASTVRLK-QEDASAPVN 255

Query: 332 RRIDILVEDRQG 343
           RRI ILV ++Q 
Sbjct: 256 RRISILVLNKQA 267



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADFMT +MAFFLVMW++  +       I +YF
Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYF 62


>gi|4928701|gb|AAD33691.1|AF136403_3 RpmB [Pseudomonas aeruginosa]
          Length = 146

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2  DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70 -NPFG 73
           +P G
Sbjct: 61 QDPIG 65


>gi|254564195|ref|YP_003071290.1| chemotaxis protein MotB [Methylobacterium extorquens DM4]
 gi|254271473|emb|CAX27488.1| putative chemotaxis protein MotB [Methylobacterium extorquens DM4]
          Length = 277

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K V+    R G+ +SI+DQ    MF + SS P   T  +L+++   L      I++ G
Sbjct: 135 LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLTPTLMKLPNRIAVTG 194

Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            T  +  R   RD    W LS +RA S   VL  +G+ +DR + ++G A        +P 
Sbjct: 195 FTATT--RPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADTEPMFPDNPY 252

Query: 328 NSANRRIDI 336
            +ANRR+ +
Sbjct: 253 LAANRRVTV 261


>gi|327478801|gb|AEA82111.1| OmpA/MotB domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 311

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIA 281
           G+ I I D +   MF + S++  P    +L  +  VL+     + I GHTDA+P+R    
Sbjct: 158 GLRILIKDDQQRFMFQRGSAVLNPHFAKLLAVLAGVLSKVENKLIISGHTDATPYRLQSG 217

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            DNW LS DRA  A  VL+ +G+    + +++  A         P + ANRR++IL+
Sbjct: 218 YDNWNLSGDRALRARNVLVDAGLPGRSVLQVTAQADVMPLRPEAPEDGANRRVEILL 274



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 6  DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          DK +  ++ +I++++        + G+WK+ +ADF   +MA F+V+WII    + T  A 
Sbjct: 5  DKGKAGEREVIVRRRTKKGHGDEHGGAWKVAFADFTLAMMALFMVLWIIQPQMNLTNPAF 64

Query: 66 -EQYFNPFGKNLMTASKGIFD 85
           EQ  NP    L+    GIFD
Sbjct: 65 GEQESNP----LVDGGAGIFD 81


>gi|75675430|ref|YP_317851.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74420300|gb|ABA04499.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 276

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++++   L  +   IS+ G
Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIRRLAAPLKATPFRISVTG 194

Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HT AS F  +    D + LS DRA    Q+L + GV    I  +SG +        DP  
Sbjct: 195 HT-ASNFIAMRSDYDGFDLSADRANVVRQILEREGVPAGHIFAVSGKSDSMPLFPDDPSL 253

Query: 329 SANRRIDI 336
           +ANRR+ I
Sbjct: 254 AANRRVTI 261


>gi|254477135|ref|ZP_05090521.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214031378|gb|EEB72213.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 278

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83
          +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+P         G N       +
Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFNGDSM 86

Query: 84 FDEQNPPERSS 94
          F EQ  P+  +
Sbjct: 87 FTEQIKPQNGT 97



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +V+  + + ++   T  G++I + D   +P+F + +    PE  ++ + I E++A  T V
Sbjct: 144 MVSLEMAQHIITRVTDEGLVIELFDTETSPLFKEGT----PEPTLLFRDIIEMVARVTGV 199

Query: 266 ----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I++ GHT + P        W LS  RA     +L   G    RI +++G A  +L 
Sbjct: 200 VENNIAVGGHTRSHPVVIANNPVWELSHARADMTRVMLESGGTKSKRIHRVTGHADRKLT 259

Query: 322 IASDPMNSANRRIDILV 338
            A +PM + N RI+I++
Sbjct: 260 DA-NPMAARNNRIEIVL 275


>gi|294828058|ref|NP_712396.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai
           str. 56601]
 gi|304570492|ref|YP_001665.2| motility protein B [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385905|gb|AAN49414.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 336

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 29/243 (11%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGKDLCK------STDL 163
           LK  S+N++K+            N +QS+  ++    L  D E+ ++ C+        + 
Sbjct: 103 LKTKSSNKEKE--------LIDENEKQSKKFRDLIDGLKEDLERERENCQKKTEALQKEY 154

Query: 164 EKSINKEENYFL---PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFET 219
           E+ I+  E+  L     +SK K L+  +KK L  L+ + ++ L   + D I KG +  + 
Sbjct: 155 ERKISDLESRILVLNDEISKLKHLSENQKKELDRLSDQ-ANELENKLTDEIKKGQIRLKR 213

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
               ++I+I D+ +   FD  S+    + +  L KI E+L  +   +I I GHTD  P R
Sbjct: 214 FHDRLVINIDDKIS---FDSGSADLKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIR 270

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335
                DNW+LS +RA S     ++S + + R   ++G+   +  +++D P N A NRR+D
Sbjct: 271 TKKFSDNWQLSGERALSVLHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVD 330

Query: 336 ILV 338
           I+V
Sbjct: 331 IVV 333


>gi|163742566|ref|ZP_02149952.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10]
 gi|161384151|gb|EDQ08534.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10]
          Length = 278

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 32/40 (80%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+P
Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSP 66



 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +V+  + + ++   T  G+++ + D   +P+F + ++ P     ++ + I ++++  T V
Sbjct: 144 MVSIEMAQHIITRVTDEGLVVELFDTEESPLFKEGTAEP----TLLFRDIVKMVSRVTGV 199

Query: 266 ----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I+I GH  +          W LS  RA +   +L   G    R+ +++G A  +L 
Sbjct: 200 VENNIAIGGHIRSHAVVVANNPVWELSHARADATRVMLESGGTKSKRMHRVTGHADRKL- 258

Query: 322 IASDPMNSANRRIDILV 338
             S+PM++ N R++I++
Sbjct: 259 TDSNPMSARNNRVEIIL 275


>gi|297618036|ref|YP_003703195.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145873|gb|ADI02630.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 258

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 14/137 (10%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +A NIV   L E  R G++IS+   ++T +F K S +  P    +++K+GE L      +
Sbjct: 116 LAGNIV---LMEQER-GLVISL---KDTLLFPKGSDVLTPRAHEIIRKVGESLKTIPNYV 168

Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323
            + GHTD  P  N  +   NW LS+ RA +   VL  + G+  DR+S  +G+  +R  + 
Sbjct: 169 RVEGHTDDLPI-NTPKFPSNWELSVLRATNVVHVLAGEVGIPPDRLSA-TGYGEYRPLMP 226

Query: 324 SD--PMNSANRRIDILV 338
           +D  P  + NRR+DI++
Sbjct: 227 NDSEPNRAMNRRVDIVI 243


>gi|45600818|gb|AAS70302.1| motility protein B [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 266

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 29/243 (11%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGKDLCK------STDL 163
           LK  S+N++K+            N +QS+  ++    L  D E+ ++ C+        + 
Sbjct: 33  LKTKSSNKEKE--------LIDENEKQSKKFRDLIDGLKEDLERERENCQKKTEALQKEY 84

Query: 164 EKSINKEENYFL---PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFET 219
           E+ I+  E+  L     +SK K L+  +KK L  L+ + ++ L   + D I KG +  + 
Sbjct: 85  ERKISDLESRILVLNDEISKLKHLSENQKKELDRLSDQ-ANELENKLTDEIKKGQIRLKR 143

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
               ++I+I D+ +   FD  S+    + +  L KI E+L  +   +I I GHTD  P R
Sbjct: 144 FHDRLVINIDDKIS---FDSGSADLKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIR 200

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335
                DNW+LS +RA S     ++S + + R   ++G+   +  +++D P N A NRR+D
Sbjct: 201 TKKFSDNWQLSGERALSVLHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVD 260

Query: 336 ILV 338
           I+V
Sbjct: 261 IVV 263


>gi|120554886|ref|YP_959237.1| flagellar motor protein MotD [Marinobacter aquaeolei VT8]
 gi|120324735|gb|ABM19050.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 260

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 123/304 (40%), Gaps = 77/304 (25%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    D  +N   W I YADF+T+L AFF+VM+ +++ ++   K + + F       
Sbjct: 1   MRRRRPPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETFT------ 54

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G+F   N P+RS Q                 + +G    +               
Sbjct: 55  -----GVF---NAPQRSLQ----------------PVTVGGQPVR--------------- 75

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           + Q +H            +D+      E   N E            + A  R + L+ +A
Sbjct: 76  APQQQH------------EDVIPPPVTEAPRNPE------------LDAEGRTEALRTMA 111

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            +++     L+   +V     ET+   I +++    N+ +F    + P  ++  V++KI 
Sbjct: 112 NQLAMEFDELINQGVVS---LETSSEWIELNL---PNSMLFGSGDAEPHYDSFEVIEKIA 165

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL +    + + G TD  P R      NW LS  RA +  ++LM  G+  +R++ + G+
Sbjct: 166 SVLRNRDNAVKVEGFTDNQPIRTSRFPSNWELSTARAAAVARMLMMEGIEPERLAAV-GY 224

Query: 316 AHHR 319
             ++
Sbjct: 225 GQYQ 228


>gi|167725893|ref|ZP_02409129.1| chemotaxis LafU protein [Burkholderia pseudomallei DM98]
 gi|167905052|ref|ZP_02492257.1| chemotaxis LafU protein [Burkholderia pseudomallei NCTC 13177]
          Length = 271

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280
           G+ I+I D     MF++ S    P  I +L  +  VL   T  + I GHTDA+ + +  +
Sbjct: 105 GVRITIHDSDKQGMFERRSDALNPPFIRLLTALVPVLGTVTNKMVIVGHTDATQYADASV 164

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +NW LS  RA  A QVL   G+   R+ +ISG       +  +P +  NRR+++L+
Sbjct: 165 FSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNPNHDMNRRVELLL 222


>gi|296188354|ref|ZP_06856746.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7]
 gi|296047480|gb|EFG86922.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7]
          Length = 277

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 10/151 (6%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +++DL KK+ S L     + +   V  E    G+++S+   R+T  F+   +  +  +  
Sbjct: 88  KMEDLKKKVDSYLQ---KNGMQNSVTTEVDERGLVVSL---RDTLFFETGKAEVIAASQG 141

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L +IG++L      + I GHTD  P  N    DNW+LS  RA +  ++L+ +GV   ++
Sbjct: 142 KLVEIGKILNQLDNTMRIEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKL 201

Query: 310 SKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S ++ +  +R  L  +++   + NRR+DI+V
Sbjct: 202 SSVA-YGEYRPVLDNSTEDGRARNRRVDIIV 231


>gi|90577360|ref|ZP_01233171.1| chemotaxis LafU protein [Vibrio angustum S14]
 gi|90440446|gb|EAS65626.1| chemotaxis LafU protein [Vibrio angustum S14]
          Length = 332

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I + D     MF + S+   P    VL  I  +    +  + I GHTDA+PF
Sbjct: 152 DVTPQGLRIILQDDFKQNMFHRGSANLTPFFEDVLLSIAPIFKQISNSLIISGHTDATPF 211

Query: 278 RN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +     R NW LS  RA  A Q L+  G+  +R+ +++  A   L     P  S NRRI+
Sbjct: 212 KRQFSNRSNWELSSSRANVARQTLIAGGMPSNRVLQVAAMAERALLNKQSPNASENRRIE 271

Query: 336 ILV 338
           + +
Sbjct: 272 LFI 274



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +N + I+ K+         + G+WK+ +ADFM  LMA FLV+W++   D   +KAI  Y 
Sbjct: 2  QNTEQIVFKRAAKRHSHQQHGGAWKVAFADFMIALMALFLVLWLMQVVDQKERKAIVAYV 61

Query: 70 NPFGKNLMTASKGIFDE 86
          N         S  +FDE
Sbjct: 62 N---------SASVFDE 69


>gi|254501723|ref|ZP_05113874.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222437794|gb|EEE44473.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 284

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 1/125 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++ E T  G+ I ++DQ    MF + S  P   T  ++ ++  VL+     I I GHT A
Sbjct: 147 IILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAQMAPVLSRMPNRIEITGHTTA 206

Query: 275 SPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                + +   W LS +RA  A Q+L + GV + +   + G +       +DP  +ANRR
Sbjct: 207 GAATVDPSYTGWDLSTERANVARQILSEYGVPDGQFYSVVGKSDTEPLFPNDPYLAANRR 266

Query: 334 IDILV 338
           + IL+
Sbjct: 267 VGILL 271


>gi|300853354|ref|YP_003778338.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
 gi|300433469|gb|ADK13236.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
          Length = 283

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 11/153 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ L K++ S L+   A+ + + V  +    G+++S+    NT  FD   +   PE   
Sbjct: 98  KLKQLKKQVDSYLA---ANGLSQSVSSQIDERGLVVSL---SNTLFFDTGKAEIKPEIQN 151

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDR 308
            L  IG+++      I + GHTD  P  N     NW+LS  RA +  Q L  K G+  ++
Sbjct: 152 TLMGIGKMINQMGNSIRVEGHTDNVPISNNEYASNWQLSCARAANVTQFLQNKVGIKPEK 211

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           ++ + G+  +R     ++D   + NRR+DI++E
Sbjct: 212 LTSV-GYGEYRSVTDNSTDANRAKNRRVDIIIE 243



 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATD 58
          W + YADFMT+LM FF+VM+ ++  D
Sbjct: 17 WMLSYADFMTLLMIFFVVMYAMSQVD 42


>gi|259907647|ref|YP_002648003.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96]
 gi|224963269|emb|CAX54753.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96]
 gi|283477490|emb|CAY73406.1| Chemotaxis protein motB (Motility protein B) [Erwinia pyrifoliae
          DSM 12163]
          Length = 302

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89
          G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF  P    +   +K  F E   
Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESVI 82

Query: 90 P 90
          P
Sbjct: 83 P 83



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIAR 282
           +I I D +  PMF   S  P      +LQ +  +L      +S+ GHTD+  +   +   
Sbjct: 147 MIQITDSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGY 206

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338
            NW LS  RA +A +VL+ +G+ +D I ++ G    R+ +    A +PM   NRRI ILV
Sbjct: 207 SNWELSTGRANAARRVLVNAGLGDDHILRVIG-TGSRMGLTDISADNPM---NRRISILV 262


>gi|310764847|gb|ADP09797.1| chemotaxis protein (motility protein B) [Erwinia sp. Ejp617]
          Length = 302

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89
          G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF  P    +   +K  F E   
Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESVI 82

Query: 90 P 90
          P
Sbjct: 83 P 83



 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIAR 282
           +I I D +  PMF   S  P      +LQ +  +L      +S+ GHTD+  +   +   
Sbjct: 147 VIQITDSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGY 206

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338
            NW LS  RA +A +VL+ +G+ +D I ++ G    R+ +    A +PM   NRRI +L+
Sbjct: 207 SNWELSTGRANAARRVLVNAGLDDDHILRVIG-TGSRMGLTDISADNPM---NRRISVLI 262


>gi|239906204|ref|YP_002952943.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239796068|dbj|BAH75057.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          SWK+ YADF+T +MAFFL+MWIIN     T K +EQYF
Sbjct: 25 SWKVAYADFVTAMMAFFLLMWIINMVPPATLKQLEQYF 62


>gi|254787123|ref|YP_003074552.1| flagellar motor protein MotB [Teredinibacter turnerae T7901]
 gi|237687385|gb|ACR14649.1| putative chemotaxis protein MotB [Teredinibacter turnerae T7901]
          Length = 329

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 53/325 (16%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           + P  L +W   +AD M++LM FF+++   +  D    K +           M  + G+ 
Sbjct: 10  ECPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRL--------AGSMAQAFGV- 60

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
                     QNK++++    I K +  +    +  + +   L  N+ Y +    +E   
Sbjct: 61  ----------QNKLNVT---DIPKGTSIIAQEFSPARPEPTPL--NVIYQNTQDITEM-- 103

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI---SS 201
            SL       +D  +  D+E+    EE         +  + ++ K++L+DL +K    + 
Sbjct: 104 -SLE------QDCAQEYDIEQG---EEGV-------DGGIKVRVKQKLEDLLQKTEQDAY 146

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  + + I  G +   TR  ++I  I ++ +  F   S+   PE   V+ ++  VL  
Sbjct: 147 ELAEALNEQIEAGQVEVETRGRLIIIRIREKGS--FVSGSAELAPEYRDVMGEVRSVLTL 204

Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               I ++GH+D  P R    R NW LS  RA S  Q LM  G       ++SGFA  R 
Sbjct: 205 KPGRIEVQGHSDNIPVRRGRYRSNWELSAARAVSVAQELMSGGALPPNRFEVSGFADTRP 264

Query: 321 KIA-SDPMNSA-NRRIDILVEDRQG 343
            +A + P N A NRR++IL+  +QG
Sbjct: 265 LVANTTPENRARNRRVEILI--KQG 287


>gi|119947181|ref|YP_944861.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37]
 gi|119865785|gb|ABM05262.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37]
          Length = 306

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KRL DL ++I ++            +L E    G+ I +    +  M+++  +   P   
Sbjct: 121 KRLDDLVEEIDAS----------NNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYE 170

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L +   V       + I GHTD++P+      NW LS  RA SA +++   G+ +  I
Sbjct: 171 DMLLEFSSVFNAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANI 230

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ G A+ +     + ++S NRR+++++  RQ 
Sbjct: 231 TQVIGMANTKPIDKQNELSSINRRVEVIILTRQA 264



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +WK+ +AD M  LM  FLV+W +   D   K+ I  YF
Sbjct: 25 AWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYF 62


>gi|224825768|ref|ZP_03698872.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224601992|gb|EEG08171.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 325

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 192 LQDLAKKIS--STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           LQ LAK +S  S  +GL A NI   +    T  G+ + + D     MF++ S++      
Sbjct: 136 LQKLAKMMSDLSVEAGL-AGNIQTVI----TPYGLRVMLHDTDKQGMFERGSAVINERFK 190

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSE 306
            +LQK+G++ AH    + + GHTD+  ++     A  NW LS +RA +A   L+  G++ 
Sbjct: 191 HLLQKMGQMFAHIDNQLLLVGHTDSLQYKGQDYAAFSNWSLSSNRAMAARMQLLLGGMAS 250

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + I ++ G A      A  P  + NRRI++LV
Sbjct: 251 NGILQVVGMADRAPLDARHPDAALNRRIELLV 282



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 6  DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          DK +E    +I K     DD  ++ G+WK+ +ADF+  LM  FLVMW++ + + +T   +
Sbjct: 4  DKKKEGTAAVIKKVSRRQDDGGHS-GAWKVAFADFVLALMCLFLVMWLLASREQETMAQL 62

Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERS 93
           +  N  G  L   ++   + Q  P  S
Sbjct: 63 LR--NGGGSPLAEGTQSRIEHQGTPHGS 88


>gi|224825740|ref|ZP_03698844.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224601964|gb|EEG08143.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 271

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +K + RL  LA  +   +  LV    VK      +  G+ I I   R++ +F  + + P 
Sbjct: 96  LKEQARLGSLASDLQKVMEPLVKGGQVK---ITQSPKGVTIEI---RDSALFPIAQAQPA 149

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGV 304
           P+++ VL ++ +VL+     I++ G TD  P RN     NW LS  RA S  ++ +++G+
Sbjct: 150 PQSLQVLAQMAKVLSQVDNPITVEGFTDNIPIRNTFYPSNWELSAARAGSVVRLFVENGI 209

Query: 305 SEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
           +  R+  + G A + L +A   S+   ++NRR+ I V
Sbjct: 210 APARLVAV-GRAEN-LPVADNTSEEGRASNRRVSITV 244



 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD 59
          +D   N   W + YADF+T+L AFF+VM+ I++ ++
Sbjct: 8  EDEHENHERWLVSYADFITLLFAFFVVMYAISSVNE 43


>gi|146312113|ref|YP_001177187.1| flagellar motor protein MotB [Enterobacter sp. 638]
 gi|145318989|gb|ABP61136.1| OmpA/MotB domain protein [Enterobacter sp. 638]
          Length = 309

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242
           KKR+ Q   KK+   L  L+ AD  ++ +      +  + G+ I IID +N PMF   S+
Sbjct: 108 KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300
                   +L+ I  VL      IS+ GHTD   + N  +   NW LS DRA ++ + L+
Sbjct: 168 EVEYYMRDILRGIAPVLNGIPNHISLSGHTDDFQYANGEKGYSNWELSADRANASRRELV 227

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             G+ + ++ ++ G +         P ++ NRRI +LV ++Q 
Sbjct: 228 AGGLDDGKVLRVVGMSSSMRVTDRGPEDAVNRRISLLVLNQQA 270



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +I+KK+        + GSWKI YADFMT +MAFFLVMW+++ +       I 
Sbjct: 2  KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLVSISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAITGGPRISNSESP 83


>gi|119897401|ref|YP_932614.1| flagellar motor protein MotD [Azoarcus sp. BH72]
 gi|119669814|emb|CAL93727.1| flagellar motor protein MotB [Azoarcus sp. BH72]
          Length = 279

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 190 KRLQDLAKKISSTLSGLVAD---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +R++++A++I   L+ L  D   +I +G        GI + I     + +F    +    
Sbjct: 102 QRMRNMAEEIRRVLAPLTQDGQVSISEGAF------GIAVEI---NASVLFAPGEATLGA 152

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305
             +  L+ + +VLA +   I+I GHTD  P  N+    NW LS  RA S  ++ ++SGV 
Sbjct: 153 PAVSALRAVAQVLAGAEFPITIEGHTDNIPISNLRFPSNWELSAVRASSVVRLFIESGVR 212

Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
            +R++  +G+A  R      +D   + NRR+ I++E R G
Sbjct: 213 AERLTA-AGYADQRPVAGNDTDAGRARNRRVTIMIESRVG 251



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 31/49 (63%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          + ++  ++D   N   W + YADF+T+L AFF+VM+ +++ ++   + +
Sbjct: 1  MPRRRKLEDEHENHERWLVSYADFITLLFAFFVVMYSLSSINEGKYRVL 49


>gi|325290746|ref|YP_004266927.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966147|gb|ADY56926.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 273

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A+ I   ++  T   G+++SI D   T +F   S+   P  + +LQKI  VLA S   I 
Sbjct: 125 ANGIESKLISSTEERGLVVSIQD---TLLFQPGSAEISPNALDILQKISSVLAASQNYIK 181

Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD 325
           + GHT   P      R NW LS+ RA +   +L +SG ++  R+S  +G+   R  IAS+
Sbjct: 182 VEGHTCTLPIHTSQYRSNWELSVIRATNVVHILAESGQINSKRLSA-TGYGEFR-PIASN 239

Query: 326 PMNSA---NRRIDILV 338
             +     NRR+D+++
Sbjct: 240 DTDEGRIKNRRVDLII 255



 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          + P N   W I Y+D +T+LM FF+VM+ ++  D+D  +A+    N
Sbjct: 8  EAPENHERWLITYSDLITLLMIFFVVMYSMSKVDNDKFRAMADALN 53


>gi|167567201|ref|ZP_02360117.1| Chemotaxis lafU protein [Burkholderia oklahomensis EO147]
          Length = 303

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280
           G+ ++I D     MF + S +   +   +L+ +  VL+  T  + I GHTDA+ +    +
Sbjct: 145 GVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASV 204

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +NW LS  RA  A Q L+  G+ E ++ ++SG       +  DP +  NRR+++L+
Sbjct: 205 FSNNWSLSSRRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLL 262



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
          +WK+ +ADF   LMA F+V+W++N T +D ++ +       G+ +     GIF++++
Sbjct: 28 AWKVAFADFTLALMALFMVLWVMNVTPEDERRRVAAEIA--GQPIFEGGVGIFEQRS 82


>gi|167574625|ref|ZP_02367499.1| Chemotaxis lafU protein [Burkholderia oklahomensis C6786]
          Length = 303

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280
           G+ ++I D     MF + S +   +   +L+ +  VL+  T  + I GHTDA+ +    +
Sbjct: 145 GVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASV 204

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +NW LS  RA  A Q L+  G+ E ++ ++SG       +  DP +  NRR+++L+
Sbjct: 205 FSNNWSLSSRRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLL 262



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
          +WK+ +ADF   LMA F+V+W++N T +D ++ +       GK +     GIF++++
Sbjct: 28 AWKVAFADFTLALMALFMVLWVMNVTPEDERRRVAAEIA--GKPIFEGGVGIFEQRS 82


>gi|6045178|dbj|BAA85317.1| MotB protein, partial [Salmonella enterica subsp. enterica
          serovar Typhimurium]
          Length = 176

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83


>gi|91777910|ref|YP_553118.1| putative flagellar motor protein motB [Burkholderia xenovorans
          LB400]
 gi|91690570|gb|ABE33768.1| Putative flagellar motor protein motB [Burkholderia xenovorans
          LB400]
          Length = 170

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 2  NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          NS   + ++    +I+++ K   D   ++ G+WKI YAD +T +MAFFL+MW++ +T   
Sbjct: 6  NSRAPQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADCVTAMMAFFLLMWLLGSTSKY 65

Query: 61 TKKAIEQYFNPFGKNLMTASKG 82
           K+ IE YFN    +L+  ++G
Sbjct: 66 DKQGIEDYFNTPLSSLIGGNEG 87


>gi|269965067|ref|ZP_06179232.1| flagellar motor protein [Vibrio alginolyticus 40B]
 gi|269830370|gb|EEZ84595.1| flagellar motor protein [Vibrio alginolyticus 40B]
          Length = 315

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 8   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R E     
Sbjct: 68  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           L+  Q  E    + T+++E  +      D+++  +KE       +S+E          ++
Sbjct: 125 LTGGQSPE----TSTQNNESAE-----ADMQQQQSKE-------MSQE----------ME 158

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L       I +G + E    G  I +I  R    F + S+   P+   +++
Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +I E++     ++ + GHTD  P    + R NW LS  RA S  Q           + K+
Sbjct: 213 QIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262

Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336
            GF+H RL++             SD   + NRR++I
Sbjct: 263 RGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEI 298


>gi|316933944|ref|YP_004108926.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601658|gb|ADU44193.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 284

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           + V+FE T  G+ + + DQ   PMF   S+IP   T  ++ ++   L  ++  ISI GHT
Sbjct: 146 RNVIFEETPVGLNLELTDQDGRPMFADGSAIPYERTRKLVARLAAPLRATSLRISIVGHT 205

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            A+  +    D   LS++RA +  ++L + G+   ++  + G           PM +ANR
Sbjct: 206 AATLMQVDDDDPLSLSINRANAVREILKQQGLPTSQVLSLVGKGDGDPLFPDAPMLAANR 265

Query: 333 RIDI 336
           R+ I
Sbjct: 266 RVTI 269


>gi|213584595|ref|ZP_03366421.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 161

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83


>gi|89100891|ref|ZP_01173740.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
 gi|89084378|gb|EAR63530.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
          Length = 269

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 68/315 (21%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-P 90
           SW I YAD +T+L+A F+V++ +++ D    +A+ + FN    +      G FD  +P P
Sbjct: 17  SWLIPYADILTLLLALFIVLFAMSSVDARKFEALSKAFN----DAFNGGTGFFDFPSPMP 72

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           + + Q     S D+  T+N                                  K+ + + 
Sbjct: 73  DGAMQ-----SADKADTEN----------------------------------KDEVEKA 93

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           S  G        LE+  N  E       ++ KI  +  K+ L+++ +K+ + +     + 
Sbjct: 94  SAAGT-------LEEGQNDME-------AEGKIQKLTDKQELKEVEEKVKTYIQN---NG 136

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269
           +   +    T  G+L++I   R+   F   S+      + +  +IGE+L       I I 
Sbjct: 137 LTDKLETSLTDEGLLVTI---RDNVFFASGSAEVRSGELTIADEIGELLVMDPPRNIIIS 193

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTD  P +N     NW LS+ RA +  ++L+ +   + R     GF   +   ++D   
Sbjct: 194 GHTDNMPIKNSEFESNWELSVMRAVNFMKILLHNKDLDARAFSAKGFGEFQPAASNDTKE 253

Query: 329 S--ANRRIDILVEDR 341
               NRR++IL+  R
Sbjct: 254 GRDKNRRVEILILPR 268


>gi|46581013|ref|YP_011821.1| chemotaxis MotB protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120601691|ref|YP_966091.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46450434|gb|AAS97081.1| chemotaxis MotB protein, putative [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120561920|gb|ABM27664.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311234697|gb|ADP87551.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 243

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          SWK+ YADF+T +MAFFL+MWI+N T  +TK+ +  YF+
Sbjct: 9  SWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFS 47



 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A+ +K R   +A     + SG+ AD++           G+ + +    +  M+   S+  
Sbjct: 89  AIAQKLRQMLMADATPQSASGISADDV-----------GVQLRV---NSDIMYAPGSAEL 134

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303
            PE   VL  +  +L      + +RGHTD+   RN I   NW LS  RA +A + ++  G
Sbjct: 135 APEGAKVLDDVIRILKEYNLYLVVRGHTDSGEPRNSIYPSNWELSGARAAAAVRYIITHG 194

Query: 304 -VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
            +   R+  I+      L+  + P + A NRR++ 
Sbjct: 195 EIKPTRLRSIAYADTRPLEPNTSPDSRAKNRRVEF 229


>gi|213855850|ref|ZP_03384090.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
          Length = 172

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83


>gi|310767897|gb|ADP12847.1| Chemotaxis protein [Erwinia sp. Ejp617]
          Length = 343

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2  KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +T  +   D  +P
Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++    + G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+    R   NW LS DRA ++ + L+  G++  ++ ++ G +   +K+ +   N A N
Sbjct: 199 FPYPGGERGYSNWELSADRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264


>gi|292488570|ref|YP_003531454.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430]
 gi|292899741|ref|YP_003539110.1| chemotaxis protein [Erwinia amylovora ATCC 49946]
 gi|291199589|emb|CBJ46706.1| chemotaxis protein [Erwinia amylovora ATCC 49946]
 gi|291554001|emb|CBA21046.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora
          CFBP1430]
 gi|312172716|emb|CBX80972.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora
          ATCC BAA-2158]
          Length = 343

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2  KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +T  +   D  +P
Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82



 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++    + G+ I IID +N PMF   S+        +L+ I  +L      +S+ GHTD 
Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRLSLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+    R   NW LS +RA ++ + L+  G++  ++ ++ G +   +K+ +   N A N
Sbjct: 199 FPYAGGERGYSNWELSANRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264


>gi|259908189|ref|YP_002648545.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96]
 gi|224963811|emb|CAX55313.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96]
 gi|283478118|emb|CAY74034.1| Chemotaxis protein MotB (Motility protein B) [Erwinia pyrifoliae
          DSM 12163]
          Length = 343

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2  KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69 FNPFGKNLMTASKGIFDEQNP 89
          F    K  +T  +   D  +P
Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++    + G+ I IID +N PMF   S+        +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
            P+    R   NW LS DRA ++ + L+  G++  ++ ++ G +   +K+ +   N A N
Sbjct: 199 FPYPGGERGYSNWELSADRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264


>gi|317047826|ref|YP_004115474.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b]
 gi|316949443|gb|ADU68918.1| OmpA/MotB domain protein [Pantoea sp. At-9b]
          Length = 342

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNKISLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
             +    R   NW LS DRA ++ + LM  G+   ++ ++ G A   +K+ +   N A N
Sbjct: 199 FQYATGDRGYSNWELSADRANASRRELMMGGLDGSKMLRVVGMA-DTMKLKNRGGNDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFF+VMW+++  +      I +YF    K  +T  +   D  +P
Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQQLVQIAEYFRTPLKVALTGGQRSSDSDSP 82


>gi|68304102|gb|AAY89709.1| MotB [Escherichia coli LW1655F+]
          Length = 144

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 11 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 68

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 69 EYFRTPLATAVTGGDRISNSESP 91


>gi|192361715|ref|YP_001982600.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107]
 gi|190687880|gb|ACE85558.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107]
          Length = 294

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 131/313 (41%), Gaps = 62/313 (19%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+T+L AFF+VM+ I+   +   + + Q F       + A K   D Q+  E 
Sbjct: 16  WLVSYADFITLLFAFFVVMYSISQVSESKYRVLSQTF-------VQAFKPTTDIQSNQEP 68

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           ++Q    L+    +    VDL   +  Q             ++N +Q     +   +D+ 
Sbjct: 69  AAQ----LTPSNDVI-TPVDLGKTAVEQ-------------VTNDEQVPIISDQAPKDT- 109

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                  +  LEK +                   K    L  ++  ++   S L+ + ++
Sbjct: 110 -------TPQLEKPV-------------------KTSDELAQISDLVTEKFSQLIDEQLI 143

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           +        +  L   I+ +++ +F   ++ P  + +V+  +I  +L + +  I + G T
Sbjct: 144 Q------VSSNELWLQIELKDSILFASGNADPSAQAMVIFDEISRILKNYSNPIQVEGFT 197

Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           D  P  N AR   NW LS  RA +  ++L   G++ +R++ +       +   + P   A
Sbjct: 198 DNVPI-NSARYPTNWELSSARASAIVKILASKGIAPERLAAVGYGEFQPVASNATPEGRA 256

Query: 331 -NRRIDILVEDRQ 342
            NRR+ I+V  R+
Sbjct: 257 QNRRVAIMVAKRK 269


>gi|315126001|ref|YP_004068004.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913]
 gi|315014515|gb|ADT67853.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913]
          Length = 331

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 6  DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          +KNQE    I+IK+         + G+WK+ +ADF   +MAFF+VMWI+  T++  ++ I
Sbjct: 3  NKNQE----IVIKRSRRRATEKPHGGAWKVAFADFTLAMMAFFMVMWIMAITNESEREEI 58

Query: 66 EQYFNPFGKNLMTASKGIFDEQNPP 90
            Y      ++      IFD QN P
Sbjct: 59 AHYMR--THSIFDGGPAIFDPQNSP 81



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 65/124 (52%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L E    G+ + I D ++  MF++S S   P    +   +G ++      I I GH+DA
Sbjct: 165 LLVEEVPLGLRVIIRDDKHHQMFERSKSQMTPFFEDLFLYLGGLVKDINNKIIISGHSDA 224

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           S F + +  NW +S DRA  A +V+   G+   ++ +++ F+ +R     +   S NRR+
Sbjct: 225 SLFIDGSSRNWDISGDRAQQARKVMTMGGMPSSQVLQVNAFSSNRPLNKENQKASENRRV 284

Query: 335 DILV 338
           ++L+
Sbjct: 285 ELLI 288


>gi|328542461|ref|YP_004302570.1| OmpA family protein [polymorphum gilvum SL003B-26A1]
 gi|326412208|gb|ADZ69271.1| OmpA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 283

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            I   ++ E T  G+ I I+DQ    MF + S  P   T  +L K+  VLA     I I 
Sbjct: 141 EISSNIIMEETEEGLNILIVDQDGRSMFREGSKYPYETTRRLLAKMAPVLAEMPNRIQIT 200

Query: 270 GHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHT       + +   W LS DRA  A  +L + G+  D+I  + G A       +DP  
Sbjct: 201 GHTTTGGTTADPSYTGWELSSDRANIARMILTEYGIPADQIHSVVGKADSEPLFPNDPFL 260

Query: 329 SANRRIDILV 338
           +ANRRI IL+
Sbjct: 261 AANRRIGILL 270


>gi|289806378|ref|ZP_06537007.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 130

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89
          +YF       +T    I + ++P
Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83


>gi|152965627|ref|YP_001361411.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
 gi|151360144|gb|ABS03147.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
          Length = 342

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 129/318 (40%), Gaps = 77/318 (24%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN------LMTASKGIFDE 86
           W + YAD +TVLMA F+V++ ++  D   +    Q+ +   K        ++ S GI + 
Sbjct: 23  WLVAYADMLTVLMALFIVLFALSQID---QLKFAQFKDGLTKGTSSSNQAVSGSAGILEA 79

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
            N          D+ ID  IT NS       T Q  Q Q +   +  +  + Q+   +  
Sbjct: 80  TNG---------DMPID--ITPNS-------TGQPLQ-QSVSTEVRKILQAAQTAQTQED 120

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS--TLS 204
           L    E+ +D  +                  ++K+   A+  K     +  +I+S   + 
Sbjct: 121 LKAAQEEVQDYRE------------------IAKQIDAALTAKGDQDQVTYRITSDGLVV 162

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           GLVADN+                         F  +S+    +   VL  I  +LA    
Sbjct: 163 GLVADNV------------------------FFANASAEVEEKGREVLDVIAPILAQLPN 198

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321
            I+++GHT++       R  DNW LS  RA +  Q    +G+  + +S  +G+A  R L 
Sbjct: 199 DIAVQGHTNSLSLSATTRYRDNWDLSAARAMTVVQRFTAAGIPGNHLSG-TGYADSRPLY 257

Query: 322 IASDPMN-SANRRIDILV 338
              DP   + NRR+D++V
Sbjct: 258 PNEDPKALTGNRRVDLVV 275


>gi|258510423|ref|YP_003183857.1| OmpA/MotB domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477149|gb|ACV57468.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 271

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 70/308 (22%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+L+ FF+VM+ + +T D T+ A             T ++ ++   +P + 
Sbjct: 16  WLVTYSDLITLLLVFFVVMFAM-STIDKTRFA-------------TLAESLYQALHPGQ- 60

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
               +I L++       +  L+ G  N  +Q+           N Q   +  N+ T++ +
Sbjct: 61  ----QIPLNMG-----TTALLESGDQNNGQQFP---------DNLQNPNNPSNATTQNQQ 102

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
             +DL  +  L+    + + Y                          S  LSG V     
Sbjct: 103 SNEDLTDAKQLDLLYREIQQYI------------------------ASHHLSGEVQ---- 134

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
              + +  R G+ I++   R+  +F+   ++ LP+   +++ +       +  I + G+T
Sbjct: 135 ---VIDEAR-GVQITM---RDVALFNTGQAVLLPKAKAIIEGLIPFFKQISNDIVVEGYT 187

Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SA 330
           D  P    I   NW LS  RA S  + L   G++  R++ +    +H +   + P    A
Sbjct: 188 DTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGMGYGQYHPVASNATPAGRQA 247

Query: 331 NRRIDILV 338
           NRR++I++
Sbjct: 248 NRRVNIVI 255


>gi|114565809|ref|YP_752963.1| hypothetical protein Swol_0240 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336744|gb|ABI67592.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 281

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 14/150 (9%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D A+K  ST +  ++DN++   ++E  R G++IS  D   T +F   S    P    ++Q
Sbjct: 117 DEAQKGGSTSTTRLSDNLI---VYEQER-GLVISFKD---TMLFASGSDELTPRAREIIQ 169

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310
           +IG  L      I + GHTD  P  N A+   NW LS+ RA +   VL ++  +  +R+S
Sbjct: 170 QIGGALLKLPNFIRVEGHTDNRPI-NTAKFPSNWELSVLRASNVVHVLNENARIPAERLS 228

Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILV 338
            I G+  +R  +A  SD   + NRR+DI++
Sbjct: 229 -IIGYGENRPLVANDSDEGRAMNRRVDIVI 257


>gi|153956379|ref|YP_001397144.1| hypothetical protein CKL_3788 [Clostridium kluyveri DSM 555]
 gi|219856692|ref|YP_002473814.1| hypothetical protein CKR_3349 [Clostridium kluyveri NBRC 12016]
 gi|146349237|gb|EDK35773.1| MotB [Clostridium kluyveri DSM 555]
 gi|219570416|dbj|BAH08400.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 254

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 21/160 (13%)

Query: 188 RKKRLQDLAKKI-----SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           ++K+L +L  ++     +S +SG V+ +I           G+++S+ D   + +FD   +
Sbjct: 87  QEKKLSELKSEVDKYLQNSEMSGSVSTSI--------NERGLIVSMND---SLLFDTGKA 135

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301
              PE    L +IG++L      + I GHTD  P   N    NW+LS DRA +  + L+K
Sbjct: 136 DIKPEFQQKLVEIGKILNQLGNYMRIEGHTDNIPISNNQYSSNWKLSCDRASNVTEFLIK 195

Query: 302 S-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S G+  +++S I G+  +R     ++D   + NRR+DI++
Sbjct: 196 SAGIEPEKLSAI-GYGEYRPVGDNSTDEGKAKNRRVDIVI 234


>gi|289523562|ref|ZP_06440416.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503254|gb|EFD24418.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 239

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 196 AKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            KK+   +  L+ ++N++  V       GI+ISIID     +F   S   +P    ++ K
Sbjct: 91  VKKVHEMMVQLLESENLMNEVTVRIEERGIVISIIDGL---LFQSGSVELIPPARRLIYK 147

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I +++      IS+ GHTD  P  R   RDNW LS  RA      L+++G+   R+  + 
Sbjct: 148 IAQIINDLPNQISVEGHTDNVPLNRGPYRDNWGLSAMRAAVVGSYLVEAGIDPKRLRTV- 206

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G+   R  + +D       NRR+DI++
Sbjct: 207 GYGQSRPLVPNDTEEHRRINRRVDIVI 233


>gi|218290401|ref|ZP_03494531.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239529|gb|EED06723.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 271

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 70/308 (22%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+L+ FF+VM+ + +T D T+ A             T ++ ++   +P + 
Sbjct: 16  WLVTYSDLITLLLVFFVVMFAM-STIDKTRFA-------------TLAESLYQALHPGQ- 60

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
               +I L++       +  L+ G  N  +Q+           N Q   +  N+ T++ +
Sbjct: 61  ----QIPLNMG-----TTALLESGDQNNGQQFP---------DNLQNPNNPSNATTQNQQ 102

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
             +DL  +  L+    + + Y                          S  LSG V     
Sbjct: 103 SNEDLTDAKQLDLLYREIQQYI------------------------ASHHLSGEVQ---- 134

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
              + +  R G+ I++   R+  +F+   ++ LP+   +++ +       +  I + G+T
Sbjct: 135 ---VIDEAR-GVQITM---RDVALFNTGQAVLLPKAKAIIEGLIPFFKQISNDIVVEGYT 187

Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SA 330
           D  P    I   NW LS  RA S  + L   G++  R++ +    +H +   + P    A
Sbjct: 188 DTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGMGYGQYHPVASNATPAGRQA 247

Query: 331 NRRIDILV 338
           NRR++I++
Sbjct: 248 NRRVNIVI 255


>gi|24375768|ref|NP_719811.1| flagellar motor protein MotB [Shewanella oneidensis MR-1]
 gi|24350713|gb|AAN57255.1|AE015861_7 chemotaxis motB protein [Shewanella oneidensis MR-1]
          Length = 275

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 139/327 (42%), Gaps = 74/327 (22%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KKKV   D P N   W I YADFMT+L A F+V++    +D +  K + +          
Sbjct: 3   KKKV---DPPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVE---------- 49

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKKQYQRLENNIFYLSN 136
               G+ D        S +KI L     I+  +V+ L  G T+       LE N    + 
Sbjct: 50  ----GLID--------SLSKIGL-----ISTPAVNALAPGGTSI------LEPNTVTSAV 86

Query: 137 SQQSEHCKNSLTRD--SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             + +  + + T    SE   DL  +    KS +    Y       ++I++ K K  +++
Sbjct: 87  DAEPKLIETATTAPSTSESNNDLTNA----KSNDTIRKY-------KEIISAKLKNEIEN 135

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
              +I       V+DN++  +    T      + I  +  P+ DK               
Sbjct: 136 QEVEIDE-----VSDNLIIRIGDNNTFFASGSAFIQPKFIPLIDK--------------- 175

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
           IGEV+A     + I GHTDA+    I  DNW LS  RA +  +++ K+ GV+  RI  + 
Sbjct: 176 IGEVIASVPGRVVIAGHTDATLPMEIYADNWDLSSLRATAVVRIMTKNKGVNPSRII-VQ 234

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G A  + +  +D       NRRI+I++
Sbjct: 235 GLADTQPRFQNDTPEHRQKNRRIEIIL 261


>gi|331006559|ref|ZP_08329851.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330419628|gb|EGG94002.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 325

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---NIVKG-VLFETTRTGILISIIDQRN 233
           + KE  + +K K++L+DL ++  +    L  D    IV G +  ET    I++ I   R 
Sbjct: 119 IDKEAGVKLKIKQQLEDLIRETQNDARELANDLREQIVAGEIEIETDGRKIIVRI---RE 175

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
              F   S I   +   V+  I E +      I ++GHTD  P R+   R NW LS  RA
Sbjct: 176 KGSFQSGSHIMNDDYYDVMDDIREAVLTKPGKIQVQGHTDNIPIRSARYRSNWELSTARA 235

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
            S  Q LM   V   R  ++SGFA  +  +   S+   S NRR++I++  RQG
Sbjct: 236 VSVAQALMDGDVDPRRF-EVSGFADTQSLVDNNSEENRSRNRRVEIVI--RQG 285


>gi|296122828|ref|YP_003630606.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015168|gb|ADG68407.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
          Length = 296

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          G+WK+ YADF+T +MAFFLVMW++  +  + K A+  YF P
Sbjct: 7  GAWKVAYADFVTAMMAFFLVMWLVGQS-KEVKTAVAHYFQP 46


>gi|289807272|ref|ZP_06537901.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 135

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P
Sbjct: 18  IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 77

Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           + N  +   NW LS DRA ++ + L+  G+   ++ ++ G A
Sbjct: 78  YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMA 119


>gi|94986926|ref|YP_594859.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731175|emb|CAJ54537.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
          Length = 237

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          GSWK+ YADF+T +MAFFL+MWI+  T  + K+ +  YF+
Sbjct: 3  GSWKVAYADFVTAMMAFFLLMWILAMTPPEVKEGLAAYFS 42


>gi|56695114|ref|YP_165461.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3]
 gi|56676851|gb|AAV93517.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3]
          Length = 285

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 31/39 (79%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+
Sbjct: 34 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFS 72



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           K + + L G     LV++ + K ++   T  G+++ +I    +P+F+ +S  P      +
Sbjct: 137 KTLEAALQGRGGESLVSEQLRKHIVTRVTDEGLIVELISTDESPLFETNSDRPTQ----L 192

Query: 252 LQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           ++++ +V+  + +++S    + GH  A P        W LS  RA     +    G+ E+
Sbjct: 193 MKELAKVVVRAADMVSNGIAVGGHIRAHPVVLARNPVWELSTARAERTRVLFEGLGMKEE 252

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDIL 337
           RI +++G A  +L    +PM + N RI+I+
Sbjct: 253 RIQRVTGHADRKLT-DPNPMAARNDRIEII 281


>gi|42524629|ref|NP_970009.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100]
 gi|39576839|emb|CAE78068.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100]
          Length = 318

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 18/125 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E  Q I+IKK + +    ++ GSWK+  ADFMT LMAFFLVMW++  + ++TKKA+  YF
Sbjct: 3   EKKQTIVIKK-IIVSGGGHHGGSWKVALADFMTALMAFFLVMWLVGQS-EETKKAVSDYF 60

Query: 70  NP----------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
           +           FG  + T  K   D  N P ++ Q     S  E   K    L +GST 
Sbjct: 61  STPSVIEYNFQNFGAEI-TLEKLFLDILNEPLKAFQ-----SFMEPADKTPNLLDMGSTK 114

Query: 120 QKKQY 124
               Y
Sbjct: 115 VVAAY 119


>gi|254517028|ref|ZP_05129086.1| flagellar motor protein [gamma proteobacterium NOR5-3]
 gi|219674533|gb|EED30901.1| flagellar motor protein [gamma proteobacterium NOR5-3]
          Length = 286

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 21/164 (12%)

Query: 195 LAKKISSTLSGLVAD-NIVKGVLFETTRTG----------ILISIIDQRNTPMFDKSSSI 243
           L +KI++ L+   AD   +K +L + T+TG          I + I +Q + P    S S 
Sbjct: 103 LQQKITALLAETQADAEKLKDMLEDETQTGKVDVESDGRTITVRIREQGSFP----SGSA 158

Query: 244 PLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMK 301
            L    V V+Q+I + L      ISI GHTD++P R    + NW LS  RA S    L++
Sbjct: 159 NLNTDFVPVMQRIRDALVEIPGTISIEGHTDSTPLRGGRYESNWGLSSSRALSVTHELLR 218

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
            G+ +D    + GFA  R    +D +   ++NRR++I++  RQG
Sbjct: 219 DGLLKDDRMMVVGFADTRPFTFNDTVEGRASNRRVEIVI--RQG 260


>gi|297544067|ref|YP_003676369.1| OmpA/MotB domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841842|gb|ADH60358.1| OmpA/MotB domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 239

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L G V +N ++G++       G++IS+ D   T +FD  S+   PE   VL KIG
Sbjct: 84  EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQD---TLLFDLGSADVHPEEKDVLIKIG 140

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N   D NW LS+ RA +  ++L+ ++GV   +IS + G
Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
           +  +R  + +D       NRR+DI++
Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVI 225


>gi|291617784|ref|YP_003520526.1| MotB [Pantoea ananatis LMG 20103]
 gi|291152814|gb|ADD77398.1| MotB [Pantoea ananatis LMG 20103]
 gi|327394202|dbj|BAK11624.1| chemotaxis protein MotB [Pantoea ananatis AJ13355]
          Length = 424

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFF+VMW+++         I +YF    K  +T  +   D  +P
Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIASPQQLIQIAEYFQTPLKVALTGGQRSSDSSSP 82



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I IID +N PMF   S+   P    +L+ I  VL      ISI GHTD   +    +
Sbjct: 147 GLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNRISIAGHTDDIQYAGGDK 206

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
              NW LS DRA ++ + L+  G+   +I +I G A   +K+ +   + A NRRI +LV
Sbjct: 207 GYSNWELSADRANASRRELVIGGLDGGKILRIVGMA-DTMKLKNRGGDDAVNRRISLLV 264


>gi|289577780|ref|YP_003476407.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527493|gb|ADD01845.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
          Length = 239

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L G V +N ++G++       G++IS+ D   T +FD  S+   PE   VL KIG
Sbjct: 84  EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQD---TILFDLGSADVHPEEKDVLIKIG 140

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N   D NW LS+ RA +  ++L+ ++GV   +IS + G
Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
           +  +R  + +D       NRR+DI++
Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVI 225


>gi|308126360|ref|ZP_07663727.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
 gi|308109365|gb|EFO46905.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
          Length = 161

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293
           MF +  +   P    +L  +  +    T  + I GHTDA PF  R   + NW LS  RA 
Sbjct: 1   MFSRGGAELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRAD 60

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            A + L++ G+ +DR+ +++G +   L    +P +S NRRI++ +
Sbjct: 61  VARKTLVEGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 105


>gi|329298550|ref|ZP_08255886.1| OmpA/MotB domain-containing protein [Plautia stali symbiont]
          Length = 319

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT ++AFF+VMW+I+  +      I +YF    K  +T  +   D ++P
Sbjct: 24 GSWKIAYADFMTAMVAFFMVMWLISIANPQELVQIAEYFKTPLKVALTGGQRSSDSESP 82



 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRVIAPLLNDIPNKISLSGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331
             + +  R   NW LS DRA ++ + L+  G+   ++ ++ G A   +K+ +   N A N
Sbjct: 199 FQYASGDRGYSNWELSADRANASRRELVAGGLDGGKMLRVVGMA-DTMKLKNRGANDAVN 257

Query: 332 RRIDILV 338
           RRI +LV
Sbjct: 258 RRISLLV 264


>gi|2130949|dbj|BAA20285.1| PomB [Vibrio alginolyticus]
          Length = 315

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 67/336 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 8   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R E     
Sbjct: 68  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           L+  Q       + T+++E  +      D+++  +KE       +S+E          ++
Sbjct: 125 LTGGQ----SPATSTQNNESAE-----ADMQQQQSKE-------MSQE----------ME 158

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L       I +G + E    G  I +I  R    F + S+   P+   +++
Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +I E++     ++ + GHTD  P    + R NW LS  RA S  Q           + K+
Sbjct: 213 QIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262

Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336
            GF+H RL++             SD   + NRR++I
Sbjct: 263 RGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEI 298


>gi|308126352|ref|ZP_07663724.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
 gi|308109323|gb|EFO46863.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
          Length = 182

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHI 106
            +         S  +FD+   NP + S S + IDL+ D  +
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV 92


>gi|300717114|ref|YP_003741917.1| flagellar motor protein [Erwinia billingiae Eb661]
 gi|299062950|emb|CAX60070.1| Flagellar motor protein [Erwinia billingiae Eb661]
          Length = 346

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          + N+  II+ KK          GSWKI YADFMT +MAFF+VMW+++  +      I  Y
Sbjct: 2  KHNNHPIILVKKKKHKRHEGGHGSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61

Query: 69 F-NPFGKNLMTASK 81
          F  P    L   SK
Sbjct: 62 FKTPLKVALTGGSK 75



 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID  N PMF    +   P    +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIAPILNDIPNKISLAGHTDD 198

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
             + N  R   NW LS DRA ++ + L+  G+   ++ ++ G A           ++ NR
Sbjct: 199 FQYANGDRGYSNWELSADRANASRRELVTGGLDSGKMLRVVGMADTMSLKNRGADDAVNR 258

Query: 333 RIDILV 338
           RI +LV
Sbjct: 259 RISLLV 264


>gi|294339857|emb|CAZ88220.1| putative outer membrane OmpA/MotB protein [Thiomonas sp. 3As]
          Length = 293

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 78/310 (25%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+T+L AFF+VM+ I++ ++   K + Q        ++ A  G        + 
Sbjct: 16  WLVSYADFITLLFAFFVVMYSISSLNEGKYKVLSQ-------TMIAAFTG--------QP 60

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           ++ N + +    +   +++DL      QK +                            E
Sbjct: 61  TTPNPVQVGQPFNSMPSAIDLPPIPKQQKPEI--------------------------IE 94

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G+    + +++K+                         LQ +A+KI +    L+A  I 
Sbjct: 95  PGRGGPGAKEVQKT-------------------------LQGVAEKIQT----LLASAIR 125

Query: 213 KG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           KG V    T  G++I I D   T +F    +   P+   +L +I  VL      I + G 
Sbjct: 126 KGDVRVRMTPLGVVIDIHD---TVLFASGQAALTPQAQDLLNQIAGVLQGVAYPIQVNGF 182

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           TD  P        NW LS  RA S  ++ ++ GV  +++   +G+  +    ++D     
Sbjct: 183 TDDRPINTPQFGSNWALSSARAVSVVEMFIEQGVKPEQLVA-AGYGQYHPVESNDTAKGR 241

Query: 329 SANRRIDILV 338
           +ANRR+ +++
Sbjct: 242 AANRRVSVVI 251


>gi|330447921|ref|ZP_08311569.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492112|dbj|GAA06066.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 332

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ I + D     MF + S+   P    VL  I  +    +  + I GHTDA+ F
Sbjct: 152 DVTPQGLRIILQDDFKQNMFHRGSANLTPFFEDVLLNIAPIFKQISNSLIISGHTDATQF 211

Query: 278 RN-IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           ++  +R  NW LS  RA  A Q L+  G+  +R+ +++G A   L     P  S NRRI+
Sbjct: 212 KSKFSRSTNWELSSSRANVARQTLIAGGMPSNRVLQVAGMAERALLNKQSPDASENRRIE 271

Query: 336 ILV 338
           + +
Sbjct: 272 LFI 274



 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          I+ K+        ++ G+WK+ +ADFM  LMA FLV+W++   D   +KAI  Y N    
Sbjct: 7  IVFKRAAKRHSNEHHGGAWKVAFADFMIALMALFLVLWLMQVVDQQERKAIVAYVN---- 62

Query: 75 NLMTASKGIFDE 86
               S  +FDE
Sbjct: 63 -----SASVFDE 69


>gi|20807043|ref|NP_622214.1| flagellar motor protein [Thermoanaerobacter tengcongensis MB4]
 gi|254479612|ref|ZP_05092920.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20515530|gb|AAM23818.1| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4]
 gi|214034455|gb|EEB75221.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 237

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR--TGILISII 229
           NY L   S + ++    + +  D   ++ + L   + ++ ++G++  T R   G+++S+ 
Sbjct: 59  NYILGKYSGKSVVPGNAENK--DNLGEVQAQLQAFIKESNLQGMV-STYRDERGLVVSLQ 115

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLS 288
           D   T +FD  S+   PE   VL KIG++L +    I + G TD  P  N   D NW LS
Sbjct: 116 D---TLLFDLGSADVHPEEKEVLIKIGKMLKNLPNYIRVEGFTDDLPIHNQKFDSNWELS 172

Query: 289 LDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + RA +  ++L+ + G+   RIS + G+  +R  + +D       NRR+DI++
Sbjct: 173 VIRATTVVKILVNEVGIEPQRISAV-GYGEYRPIVPNDSEEHRRLNRRVDIVI 224


>gi|92114147|ref|YP_574075.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91797237|gb|ABE59376.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 330

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+ I ++D    PMF+  S+   P    +LQ +   L      IS+ GHTD   +    +
Sbjct: 145 GLRIQLVDTDKRPMFELGSARLAPYMRDLLQALAPELNDVPNAISLTGHTDDLRYAGGEK 204

Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              NW LS DRA ++ + L+ +G+   ++ ++SG         + P ++ NRRI I+V
Sbjct: 205 GYSNWELSADRANASRRALVAAGLDSSKLLRVSGMGARVNLEGTQPSDAVNRRISIVV 262



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          G+WKI YADFMT LMA FLV+WI++    +    I +YF
Sbjct: 22 GNWKIAYADFMTALMALFLVLWILSMVPKNELDNIAEYF 60


>gi|213419089|ref|ZP_03352155.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 126

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFFLVMW+I+ +       I +YF       +T    I + ++P
Sbjct: 1  GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSP 59


>gi|167038133|ref|YP_001665711.1| OmpA/MotB domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039156|ref|YP_001662141.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256750878|ref|ZP_05491762.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913254|ref|ZP_07130571.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561]
 gi|307723732|ref|YP_003903483.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320116543|ref|YP_004186702.1| OmpA/MotB domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166853396|gb|ABY91805.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X514]
 gi|166856967|gb|ABY95375.1| OmpA/MotB domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256750213|gb|EEU63233.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889939|gb|EFK85084.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561]
 gi|307580793|gb|ADN54192.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X513]
 gi|319929634|gb|ADV80319.1| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 238

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 12/138 (8%)

Query: 212 VKGVLFETTRTGILISIIDQR-------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           +KG + E    G + S ID+R       ++ +FD  S+   PE   VL KIG++L     
Sbjct: 89  LKGFIKENNLQGAVTSYIDERGLVISLQDSLLFDLGSADVRPEEKEVLIKIGDMLKSLPN 148

Query: 265 VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI 322
            I + G TD  P  N   D NW LS+ RA +  ++L+ + G+   RIS + G+  +R  +
Sbjct: 149 HIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVNEVGIEPARISAV-GYGEYRPVV 207

Query: 323 A--SDPMNSANRRIDILV 338
              S+     NRR+DI++
Sbjct: 208 PNNSEENRRLNRRVDIVI 225


>gi|83589323|ref|YP_429332.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83572237|gb|ABC18789.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 249

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 14/131 (10%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V   T   G+++S+ D     +F K S+   PE   +L+++G  LA     + + GHTD 
Sbjct: 111 VTLNTEERGLVVSVADAV---LFPKGSADLTPEARDLLRQVGRALARLPNYLRVEGHTDN 167

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
            P    A   NW LS  RA +  +VL+ ++G+  +R+S  +G+  +R  +A  P NS   
Sbjct: 168 LPINTPAFPSNWELSTARATNVVKVLISEAGIKPERLSA-TGYGEYR-PVA--PNNSEAD 223

Query: 331 ---NRRIDILV 338
              NRR+DI+V
Sbjct: 224 MARNRRVDIVV 234


>gi|90021803|ref|YP_527630.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89951403|gb|ABD81418.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 288

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 16/153 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETI 249
           L+ + +++   LSG++A         E T  G    + I+   N+  F    + P  E  
Sbjct: 79  LKQIEQQLEQALSGVLATG-------EVTLNGNQNWVEIVIDANS-FFSSGQATPSDEAR 130

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL K+ ++++     +++ GHTD +P  N   ++NW LS  RA +   +L  +GVS +R
Sbjct: 131 TVLNKVADIISPFDNAVAVGGHTDDTPINNAQFKNNWELSSARAVTVVNLLAFAGVSPER 190

Query: 309 ISKISGFAHHRLKIASDPM---NSANRRIDILV 338
           +S + G+  +R  IA +      SANRR+ + V
Sbjct: 191 MSAV-GYGEYR-PIADNQTPEGRSANRRVVLRV 221



 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ ++  ++   + + +
Sbjct: 16 WLVSYADFITLLFAFFVVMYSVSQVNETKYRTLSE 50


>gi|313200583|ref|YP_004039241.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312439899|gb|ADQ84005.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 174 FLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           F+ PL   +    +R++R  +  +A  +++ L+ +V +  +K  + +  R G+ + I D 
Sbjct: 86  FIRPLELARRNDKQRREREAMTAMANNLANHLAPMVLEGKIK--VMQNNR-GVRVDIHD- 141

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
             + +F   +S   P     L +I + L  +   I + GHTD  P  N     NW LS  
Sbjct: 142 --SLLFAPGASELQPIASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAM 199

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           RA S  ++L  SG+ E R+S +   A   L+  S P+  A NRR+ I++
Sbjct: 200 RASSVVRMLQDSGLDEKRLSAVGFGASQPLEDNSTPLGRARNRRVSIMI 248



 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          ++  +++  +N   W + YADF+T+L AFF+VM+ I++ +
Sbjct: 2  RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVN 41


>gi|253998497|ref|YP_003050560.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985176|gb|ACT50033.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 174 FLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           F+ PL   +    +R++R  +  +A  +++ L+ +V +  +K  + +  R G+ + I D 
Sbjct: 86  FIRPLELARRNDKQRREREAMTAMANNLANHLAPMVLEGKIK--VMQNNR-GVRVDIHD- 141

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
             + +F   +S   P     L +I + L  +   I + GHTD  P  N     NW LS  
Sbjct: 142 --SLLFAPGASELQPIASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAM 199

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           RA S  ++L  SG+ E R+S +   A   L+  S P+  A NRR+ I++
Sbjct: 200 RASSVVRMLQDSGLDEKRLSAVGFGASQPLEDNSTPLGRARNRRVSIMI 248



 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          ++  +++  +N   W + YADF+T+L AFF+VM+ I++ +
Sbjct: 2  RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVN 41


>gi|88799579|ref|ZP_01115155.1| Flagellar motor protein [Reinekea sp. MED297]
 gi|88777664|gb|EAR08863.1| Flagellar motor protein [Reinekea sp. MED297]
          Length = 319

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 55/317 (17%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
            L +W   ++D M +LM FF+++   +  D    K+      N FG              
Sbjct: 14  GLPAWMATFSDLMALLMCFFVLLLSFSEMDALKFKRLAGSLRNAFG-------------- 59

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ--RLENNIFYLSNSQQSEHCKN 145
                  Q +I          N+ D+  G++   K++   R E     +         K+
Sbjct: 60  ------VQAEI----------NANDVPKGTSIIAKEFSPGRPEPTPLNVVRQDTVADLKD 103

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           SL       + LC+ T    ++ +E       ++++ I++ +  + L+D A +I+  LS 
Sbjct: 104 SL-------EILCQDT---FTMQEEAQGDQGQMTRQVIISDEAMQELEDEAARIAQALS- 152

Query: 206 LVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
              D I +G+L  ET    I+I + +Q     F   S     E + VL K+ E+L  +  
Sbjct: 153 ---DEIAEGMLQIETVNETIIIRVKEQS----FTGGSDYVADEFLPVLDKVRELLVTTPG 205

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322
            I + GHTD  P      R+NW LS  RA S  + L +   ++E+R + +   +   +  
Sbjct: 206 DIWVEGHTDNVPIATSQFRNNWLLSAARALSVAEYLFIAPEMAEERFTIVGHGSTKPIAS 265

Query: 323 ASDPMNSA-NRRIDILV 338
              P   A NRR++I++
Sbjct: 266 NETPEGRAQNRRVEIII 282


>gi|192291615|ref|YP_001992220.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192285364|gb|ACF01745.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 285

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K V+FE T  G+ + + DQ   PMF   S++P   T  ++ ++   L  ++  + I GHT
Sbjct: 147 KNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPLRATSLRVIIVGHT 206

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            A+  +    D   LS++RA +  +VL + G+   ++  + G           P  +ANR
Sbjct: 207 AATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGEPLFPDAPALAANR 266

Query: 333 RIDI 336
           R+ I
Sbjct: 267 RVTI 270


>gi|307265590|ref|ZP_07547144.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919388|gb|EFN49608.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 237

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L+G + +N ++G++       G++IS+ D   + +FD  S+   PE   VL KIG
Sbjct: 83  EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQD---SLLFDLGSADVHPEEKDVLIKIG 139

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N   D NW LS+ RA +  ++L+ + G+   RIS + G
Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
           +  +R  + +D       NRR+DI++
Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVI 224


>gi|4322001|gb|AAD15905.1| sodium-driven polar flagellar protein [Vibrio parahaemolyticus]
          Length = 315

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 67/336 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 8   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R E     
Sbjct: 68  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           L+  Q  E    S         +    +D+++  +KE       +S+E          ++
Sbjct: 125 LTGGQSPETSTQS---------NQSAESDMQQQQSKE-------MSQE----------ME 158

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L       I +G + E    G  I +I  R    F + S+   P+   +++
Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +I E++     ++ I GHTD       + R NW LS  RA S  Q           + K+
Sbjct: 213 QIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262

Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336
            GF+H RL++             SD   + NRR++I
Sbjct: 263 RGFSHQRLRVRGMADTEPLVPNDSDENRALNRRVEI 298


>gi|312884825|ref|ZP_07744517.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367477|gb|EFP95037.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 331

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           ++RL  LAK I          N  +G V    T  G+ + + D     MF +  S   P 
Sbjct: 126 QERLAALAKVIEEA----TKQNGAQGNVNITVTPQGLRVVLQDDEKQTMFSRGGSKLTPF 181

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGV 304
              +L  I  +       I I GHTD+  ++   NI + NW LS  RA +A   L+++G+
Sbjct: 182 FEDLLVAIAPIFEKVANPIIISGHTDSIRYKSRFNI-KSNWELSTSRANAARYTLVQAGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +R+ +++G +   L     P +S NRRI++ V
Sbjct: 241 PSERVLQVTGMSDRALLNPQAPKSSENRRIELFV 274



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI--------- 65
          ++ K+  + D    + G+WK+ +ADFM  LMA FLV+WI+   D + +KAI         
Sbjct: 7  VVFKRSKSEDHDVVHGGAWKVAFADFMIALMALFLVLWIMQVVDREERKAIMAHLHSASV 66

Query: 66 --EQYFNPFGKNLMTASKGIFDEQNPPER 92
            + Y NPF  +   +   +  E + P R
Sbjct: 67 FEKSYGNPFDTSQSISPIDLASESSVPSR 95


>gi|319787078|ref|YP_004146553.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465590|gb|ADV27322.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 323

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 53/310 (17%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I+  +       E  +      L  A  G     NP  
Sbjct: 15  AWAIPYADLMTLLLAFFVVMYAISTLN-------EGKYRVLADALTAAFGGAPRTINP-- 65

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                +++G+        +L+   F   +  QS        R  
Sbjct: 66  ---------------------VQVGN-------HQLQGADFDRPSPIQSG------ARSG 91

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
                   +  L  ++       +P    ++    + +++L  +A ++   LS LV   +
Sbjct: 92  PSAPSPAPNPTLLPALASHMRTGVPVDVSDRATVQRAQRQLGTIAARLEEALSPLVDARL 151

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +      T R   L   ++  +  +FD  S+        VL ++ +VL  +   + + G+
Sbjct: 152 I------TVRRAELWLEVEINSDILFDTGSASLDASARQVLSRLADVLRDTPNPVRVEGY 205

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMN 328
           TD  P   +    NW LS  RA S   +   +GV+ +R++ + G+  HR +    ++   
Sbjct: 206 TDDRPINTVQFPSNWELSAARAASVVHLFSANGVAPERLAMV-GYGEHRPRADNLTEEGR 264

Query: 329 SANRRIDILV 338
           + NRR+ ++V
Sbjct: 265 NRNRRVVLIV 274


>gi|538830|pir||F40590 motB homolog lafU - Vibrio parahaemolyticus (fragment)
          Length = 202

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + K    D P+  G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHI 106
            +         S  +FD+   NP + S S + IDL+ D  +
Sbjct: 61  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV 92


>gi|326389648|ref|ZP_08211214.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994363|gb|EGD52789.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 237

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L+G + +N ++G++       G++IS+ D   + +FD  S+   PE   VL KIG
Sbjct: 83  EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQD---SLLFDLGSADVHPEEKDVLIKIG 139

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N   D NW LS+ RA +  ++L+ + G+   RIS + G
Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
           +  +R  + +D       NRR+DI++
Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVI 224


>gi|225849649|ref|YP_002729883.1| flagellar motor protein MotB [Persephonella marina EX-H1]
 gi|225645473|gb|ACO03659.1| flagellar motor protein MotB [Persephonella marina EX-H1]
          Length = 231

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           MF   S+ P  E + +L ++ + L  +   I+I GHTD +P R   + N  LS +RA S 
Sbjct: 126 MFPSGSATPYKEVVPLLLEVCKRLKETQFPITIEGHTDNTPIR--FKSNLELSAERALSV 183

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339
            + L KS    DR+    G+  +R  + +D P N A NRRI+I+++
Sbjct: 184 LK-LFKSCGYPDRLLSARGYGEYRPLVPNDTPENRAKNRRIEIVID 228


>gi|134300281|ref|YP_001113777.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052981|gb|ABO50952.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1]
          Length = 261

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQR 232
            +P  S+ K L    ++  Q   +KI   +   V  N + G V       G+++S  D  
Sbjct: 70  MVPGASESKELDTAMEQIEQQKMEKIKKQIQEYVDKNGLSGKVTVAIEERGVVVSFQD-- 127

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDR 291
              +F    +  +P +  ++ K+G +L+ +   I + GHTD  P + N    NW LSL R
Sbjct: 128 -VVLFPLGVADLVPHSQGIVDKVGAILSQTPNYIRVEGHTDNLPIQTNKFPSNWELSLAR 186

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           + S    L+  S +  DR+S  +G+  +R + A  SD     NRR+DI+V
Sbjct: 187 SASVVHRLINFSHIPPDRLSA-TGYGEYRPRRANDSDANRQQNRRVDIIV 235



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP--- 89
           W I Y+D +T+L+ FF+VM+ ++  D +   AI           M  S+ I +   P   
Sbjct: 16  WLITYSDLITLLLIFFVVMYTLSKVDANKYHAIASSL----AKTMGGSQSIMESGGPSMV 71

Query: 90  PERSSQNKIDLSIDE 104
           P  S   ++D ++++
Sbjct: 72  PGASESKELDTAMEQ 86


>gi|304317567|ref|YP_003852712.1| OmpA/MotB domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779069|gb|ADL69628.1| OmpA/MotB domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 240

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIID 230
           NY +   S   IL   +          I S L  L+  +N+   V ++    G +IS+ D
Sbjct: 61  NYVVGQYSGNSILDSIKTTNNTSTDNTIESQLDKLIKQNNLQNMVTYKVDERGFVISLND 120

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSL 289
              T +FD  S+   P+    L KIG +L      I + G+TD  P  N     NW LS+
Sbjct: 121 ---TLLFDTGSADVKPDQKATLIKIGNILKAMPNYIRVEGYTDNVPINNSQFHSNWELSV 177

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
            RA +  ++L+    +   +IS + G+  +R  +   SD     NRR+DI++
Sbjct: 178 IRATNVVEILVNDVKIDPAKISAV-GYGEYRPIVPNDSDKNRQLNRRVDIVI 228


>gi|88704266|ref|ZP_01101980.1| motB family protein [Congregibacter litoralis KT71]
 gi|88701317|gb|EAQ98422.1| motB family protein [Congregibacter litoralis KT71]
          Length = 286

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 21/164 (12%)

Query: 195 LAKKISSTLSGLVAD-NIVKGVLFETTRTG----------ILISIIDQRNTPMFDKSSSI 243
           L +KI++ L+   AD + +K +L +  +TG          I + I +Q + P    S S 
Sbjct: 103 LQQKITALLAETEADADKLKDMLEDEVQTGKVDVESDGRTITVRIREQGSFP----SGSA 158

Query: 244 PLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMK 301
            L    V V+ +I E L      ISI GHTD++P R    + NW LS  RA S    L++
Sbjct: 159 TLNTDFVPVMARIREALTEIPGTISIEGHTDSTPLRGGRYESNWGLSSSRALSVTHELLR 218

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
            G+ +D    + GFA  R    +D +   ++NRR++I++  RQG
Sbjct: 219 EGLLKDDRMMVVGFADTRPFTFNDTVEGRASNRRVEIVI--RQG 260


>gi|127513695|ref|YP_001094892.1| flagellar motor protein MotB [Shewanella loihica PV-4]
 gi|126638990|gb|ABO24633.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 314

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 55/339 (16%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73
           + KKV  D  P     W   +AD M++LM FF+++   +  D    K I       FG  
Sbjct: 1   MAKKVKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 74  -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QY 124
                K++   +  I  E  P  PE +    I+   +E +T+ +++++ G  +     Q 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNE-MTEPTIEVQAGEDDSAGGVQQ 119

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           QR E      S++ Q E        DSE                          +K++  
Sbjct: 120 QRGEQRGGEASSTAQEEA-------DSEA------------------------QAKQQQQ 148

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               + ++ D  KK++  L+  + D  ++    E+    I+I I   R    F   S   
Sbjct: 149 EAASQDQINDRVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFL 202

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKS 302
            P    V++++GE+L     +I++ GHTD     N +   NW LS  RA + A++++   
Sbjct: 203 QPRFKPVIRRVGELLKDVPGIITVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELVRVP 262

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           G  + R+ K+ G A     + +D     + NRR++I +E
Sbjct: 263 GFDQQRM-KVVGMASTAPLVPNDSAANRARNRRVEIAIE 300


>gi|313902670|ref|ZP_07836069.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467108|gb|EFR62623.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 364

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 56/315 (17%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YAD +T+L+AFF+VM+ ++  +    +A+            TA + + D +     
Sbjct: 76  WLLTYADLITLLLAFFVVMYAMSEVNAARYQALAASLR---AAFATAGETLIDTEG---- 128

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                  +S D     + ++   G                 L  +   E         S 
Sbjct: 129 -------ISPDARKVLDGLNRDTGQPYPPA-----------LPPAGSPEAPGEGSGEPSG 170

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL--SGLVADN 210
           +   L        S  +     +PP+S E+      ++R++ L ++++  L  +GL    
Sbjct: 171 EWPGLPGL----PSPGQGAGTAVPPMSAEE------RERMEGLVERVNEALREAGLGGRA 220

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +      T  G+ I   DQ     FD   +   PE   +L+++  +LA     I + G
Sbjct: 221 SAR-----LTERGVAIIFDDQV---FFDLGRAELRPEGRDLLRRLAPILAQVPGTILVEG 272

Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD  P R+  R   NW LS  RA +  + L +    + R    +G+   R +    P  
Sbjct: 273 HTDNLPIRS-GRYPSNWELSTARATTVVRYLAEQAGLDPRRLAAAGYGEWRPRY---PNT 328

Query: 329 SA-----NRRIDILV 338
           SA     NRR++I++
Sbjct: 329 SAANRARNRRVEIVL 343


>gi|94500541|ref|ZP_01307072.1| motility protein, MotA family protein [Oceanobacter sp. RED65]
 gi|94427331|gb|EAT12310.1| motility protein, MotA family protein [Oceanobacter sp. RED65]
          Length = 336

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           TR G+ I I+D+ N PMF+  SS        +L ++  +L      ISI GHTD+S   N
Sbjct: 150 TREGLRIQIVDKTNRPMFNPGSSRLKYYAEDILYEMAPILQAVPNRISITGHTDSSGSAN 209

Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF---AHHRLKIASDPMNSANRRID 335
                NW LS  RA +A + L  +G+  ++I+++ G    AH  ++   DP +  NRRI 
Sbjct: 210 PWDTGNWELSAGRANAARRALADAGLDSEKIAQVVGMGDKAHFNIE---DPTDPVNRRIA 266

Query: 336 ILV 338
           I+V
Sbjct: 267 IVV 269



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          DQ  II K+V      ++ G+WK+  ADF   +MA FL++W+IN+++ +  +A+  YFN
Sbjct: 5  DQQQIIIKRVKKGGHGHHGGAWKVALADFAMAMMALFLILWLINSSNQEEIEAVAGYFN 63


>gi|39935962|ref|NP_948238.1| chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009]
 gi|39649816|emb|CAE28338.1| possible chemotaxis protein MotB2 [Rhodopseudomonas palustris
           CGA009]
          Length = 326

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K V+FE T  G+ + + DQ   PMF   S++P   T  ++ ++   L  ++  + I GHT
Sbjct: 188 KNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPLRATSLRVIIVGHT 247

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            A+  +    D   LS++RA +  +VL + G+   ++  + G           P  +ANR
Sbjct: 248 AATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGEPLFPDAPALAANR 307

Query: 333 RIDI 336
           R+ I
Sbjct: 308 RVTI 311


>gi|294139895|ref|YP_003555873.1| sodium-driven polar flagellar protein PomB [Shewanella violacea
           DSS12]
 gi|293326364|dbj|BAJ01095.1| sodium-driven polar flagellar protein PomB [Shewanella violacea
           DSS12]
          Length = 325

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 40/337 (11%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73
           + KK   +  P     W   +AD M++LM FF+++   +  D    K I       FG  
Sbjct: 1   MAKKAKCECPPPGAPLWLATFADLMSLLMCFFILLLSFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 74  -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
                K++   +  I  E  P  PE +    I+   +E +T+  ++ + G  +     Q+
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNE-MTEPILEYQAGDDDSAGGVQQ 119

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                      +Q     ++  ++ ++ K   K+    K+  +EE       SK +  A 
Sbjct: 120 --------QRGEQRGGEASATAQEQDEAKAESKAESESKAKAEEE-------SKAQAAA- 163

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             ++ + D  KK++  L+  + D  ++    E+    I+I I   R    F   S    P
Sbjct: 164 --QENINDQVKKMAMELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQP 215

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGV 304
               V++++GE+L     ++++ GHTD     N +   NW LS  RA + A++++   G 
Sbjct: 216 RFKPVVRRVGELLRDIPGIVTVSGHTDDMHISNELYSSNWDLSSKRAVAVAHELIKVKGF 275

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
            ++R+ K+ G A+    + +D  +  S NRR++I +E
Sbjct: 276 EQNRM-KVVGMANSAPLVDNDSASNRSRNRRVEIAIE 311


>gi|332294873|ref|YP_004436796.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332177976|gb|AEE13665.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 243

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G LISI+  +   +FD   +   P+   +L KI  VL      + + GHTD  P   
Sbjct: 122 TERGYLISILTDKI--LFDSGKANLKPDAFPLLTKIAAVLKKIDNEVYVEGHTDNVPIHT 179

Query: 280 IA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336
           +    NW LS  RA S  +  ++ G+S  R+  I+G+A  R   ++D P     NRRIDI
Sbjct: 180 VEFPSNWELSAARAASVAKYFIEQGISPSRLV-IAGYADTRPVASNDTPQGRQKNRRIDI 238

Query: 337 LVEDR 341
           L+  +
Sbjct: 239 LITKK 243


>gi|254255076|ref|ZP_04948393.1| Flagellar motor protein [Burkholderia dolosa AUO158]
 gi|124899721|gb|EAY71564.1| Flagellar motor protein [Burkholderia dolosa AUO158]
          Length = 352

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-- 280
           G+ + + D  +  +F++ S++P P    +L K+G + A +   + + GHTD+ P+R    
Sbjct: 198 GLRLMLHDSESQGVFERGSAVPAPPFRPLLDKMGALFAQTDSPLLVIGHTDSVPYRKYGL 257

Query: 281 -ARDNWRLSLDRAYSAYQVLM 300
             R NW LS DRA SA + L+
Sbjct: 258 GGRSNWHLSADRAMSARRALV 278


>gi|239906259|ref|YP_002952999.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239796124|dbj|BAH75113.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 341

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 130/333 (39%), Gaps = 38/333 (11%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATD--------DDTKKAIEQYFNPFGKNLMTASKGIF 84
           W I  AD MT+L+ FFL++  ++  D        D  ++A+ Q   P  K     +  + 
Sbjct: 18  WPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQQAMVQE-KPAPKKKTAETAPVT 76

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D+  PP    +     S   H T +     +     +       + +      Q  E  K
Sbjct: 77  DKTAPPPLPFEKPQVRSKVSHTTLSREPAPLYEQPAQGPQAADASKLGEPHPGQPQEPAK 136

Query: 145 NS-LTRDSEKGK--DLCKSTDLEKSINKEENYFLPPLSKEKIL------AMKRKKRLQDL 195
            +  T+  E  K  +  K  +  K     +       + EK            +K L D+
Sbjct: 137 AAEPTKPGEPAKTPEAAKPGEQPKGTEPAKADATADATAEKAPKPGEERTGPTRKSLDDI 196

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K++S  L     D     V       G+ +++   R    FD +S+   P  I +L+ I
Sbjct: 197 RKELSGKL-----DVTAGAVEVRPRDNGVELNL---RGAAFFDLASAEVKPGGIPLLRDI 248

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              LA +   +++ GHTD  P  + +   NW LS  RA    + L+  GV+ D + ++ G
Sbjct: 249 AATLAGTPYKVTVEGHTDNLPMESWLYPSNWELSSARASRVARFLIDHGVARDHL-RVEG 307

Query: 315 FAHHRLKIASD--------PMNSA-NRRIDILV 338
            A  +  +A +        P N A NRR+ ILV
Sbjct: 308 LADTQ-PVAPNTDPAGRSIPENQARNRRVVILV 339


>gi|304396266|ref|ZP_07378148.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304356635|gb|EFM21000.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 313

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFF+VMW+++  +      I  YF    K  +T  +   D  +P
Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADYFKTPLKIAITGGQRSSDSTSP 82



 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID +N PMF    +   P    +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIAPILNDIPNRISLAGHTDD 198

Query: 275 SPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
             F+  + D    NW LS DRA ++ + L+  G+   +I ++ G A           ++ 
Sbjct: 199 --FQYASGDKGYSNWELSADRANASRRELVIGGLDSGKILRVLGMADTMSLKNRGGNDAV 256

Query: 331 NRRIDILV 338
           NRRI +LV
Sbjct: 257 NRRISLLV 264


>gi|323703350|ref|ZP_08115000.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531713|gb|EGB21602.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 263

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SG 303
           P +  ++ KIG +L  +   I + GHTD  P R      NW LSL RA S    L++ SG
Sbjct: 142 PSSTQIVDKIGAILHQTNNYIRVEGHTDNLPIRTSKFPSNWELSLARAASVVHRLIEYSG 201

Query: 304 VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           +  +R+S  +G+  +R +    SD     NRR+DI+V
Sbjct: 202 IPAERLSA-TGYGEYRPRRPNDSDANRQQNRRVDIVV 237



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 23/118 (19%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KK+   +   +N   W I Y+D +T+L+ FF+VM+ ++  D +   AI           
Sbjct: 1   MKKRGGGEPEKDNKERWLITYSDLITLLLIFFVVMYTLSKIDANKYYAIASSL----AKT 56

Query: 77  MTASKGIFD----------------EQNPPERSSQ---NKIDLSIDEHITKNSVDLKI 115
           M  S+ I D                EQ  PE   Q     I   I ++I KN +  K+
Sbjct: 57  MGGSQSIMDNAGAAIVPGAAREKSNEQGMPESVEQRNMESIKRQIQDYIDKNGLSGKV 114


>gi|156973487|ref|YP_001444394.1| flagellar motor protein MotB [Vibrio harveyi ATCC BAA-1116]
 gi|156525081|gb|ABU70167.1| hypothetical protein VIBHAR_01177 [Vibrio harveyi ATCC BAA-1116]
          Length = 314

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 73/339 (21%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 7   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 66

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKK 190
             + + S H   S   D ++ +    S ++E   +SI K               A++R+ 
Sbjct: 127 GQSPETSTHNNQSAESDMQQQQSEQTSQEMETLMESIKK---------------ALERE- 170

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                               I +G + E    G  I +I  R    F + S+   P+   
Sbjct: 171 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++++I E++     ++ + GHTD  P    + R NW LS  RA S  Q           +
Sbjct: 209 LVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQ----------EM 258

Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336
            K+ GF+H RL++             SD   + NRR++I
Sbjct: 259 EKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRVEI 297


>gi|114563951|ref|YP_751465.1| flagellar motor protein MotB [Shewanella frigidimarina NCIMB 400]
 gi|114335244|gb|ABI72626.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 308

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A   ++ + D  KK++  L+  + D  ++    E+    I+I I   R    F   S   
Sbjct: 143 AASSQENINDQVKKMAEKLNEEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFL 196

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKS 302
            P+   +++ IGE+L     +I++ GHTD +   N +   NW LS  RA + A+++   S
Sbjct: 197 QPKFKPIVRSIGELLKDVPGIITVSGHTDGADINNELYSSNWELSSQRAVAVAHELRRVS 256

Query: 303 GVSEDRISKISGFAHHRLKIASDP-MNSA-NRRIDILVE 339
           G  E R+ K+ G A +R  +A+D   N A NRR++I +E
Sbjct: 257 GFDESRM-KVVGEASNRPLVANDSNENQARNRRVEISIE 294


>gi|206889281|ref|YP_002248656.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741219|gb|ACI20276.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 213

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +D  K I   L  L+ D  + G+  ++   GI+I++ D   + +F   S+   PE+   L
Sbjct: 69  EDRNKAIIEDLRKLLND--ISGINIKSDARGIVITLPD---SLLFSSGSAELKPESTDAL 123

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +I E L      ++I GHTD  P  + + + NW LS  RA S    L++ G+S DR   
Sbjct: 124 TRIAEKLKELPGKVAIEGHTDNIPISSSVYKSNWELSAARASSVLHFLLQRGLSPDRF-L 182

Query: 312 ISGFAHHRLKIA---SDPMNSANRRIDILV 338
           I+G+  ++  +A   +D   + NRR+++++
Sbjct: 183 IAGYGEYK-PVATNDTDEGRAKNRRVELII 211


>gi|71906384|ref|YP_283971.1| flagellar motor protein MotD [Dechloromonas aromatica RCB]
 gi|71846005|gb|AAZ45501.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 257

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           ++++++++++A  I   L  LVA   V+  L ET+R G+ I I D   + +F    +   
Sbjct: 94  IEQRQKMKNMAGDIMQALQPLVAQGKVR--LLETSR-GVTIEIND---SILFPAGQAKLQ 147

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304
             +I  +  I +VLA S   I+I GHTD  P        NW LS  RA +  ++    GV
Sbjct: 148 SASISAMLAIAQVLAASDFPITIEGHTDNVPIATAQFPSNWELSAMRATTVLRLFNDGGV 207

Query: 305 SEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVE 339
             +R++ I G+   R L+  +     A NRR+ IL++
Sbjct: 208 GAERLTAI-GYGETRPLETNTTVEGRARNRRVSILID 243



 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
          W + YADF+T+L AFF+VM+ I++ ++   K +        KN+     G
Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSNSLTNAFKNVTGQPGG 65


>gi|172062649|ref|YP_001810300.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171995166|gb|ACB66084.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 228

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP+   VL +I   L+ H+T  I + GHTD++P  N   + NW LS  RA 
Sbjct: 121 LFNVGDARLLPDATPVLSEIARALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAG 180

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           S  + L   GV+  R++ I G A  +  +ASD  P  + NRR+ I V
Sbjct: 181 SVVRYLADRGVAPHRLAAI-GRADTQPLVASDDAPARARNRRVTIFV 226


>gi|182412224|ref|YP_001817290.1| OmpA/MotB domain-containing protein [Opitutus terrae PB90-1]
 gi|177839438|gb|ACB73690.1| OmpA/MotB domain protein [Opitutus terrae PB90-1]
          Length = 266

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTAS 80
          G+WK+ YADF+T +MA F+V+W I+A D     A  QYF NPF   ++ AS
Sbjct: 12 GAWKVAYADFVTAMMALFMVLW-ISAQDQKILIATSQYFQNPFQAPMLAAS 61


>gi|316932465|ref|YP_004107447.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600179|gb|ADU42714.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 341

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287
            FD   ++ LPE    L K+ + L        A    V+ + GHTD  P     R NW L
Sbjct: 227 FFDTGQALLLPEGRAELDKVADALKELDKQIPAELPWVVRVDGHTDRRPITGAFRSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILVE 339
           S  RA S  Q LM  GV   R+   +GFA  +      P+++A        NRRI++ + 
Sbjct: 287 SSARAISVVQYLMSRGVPAQRLVA-AGFAEFQ------PLDTADTEDAYRRNRRIELKLT 339

Query: 340 DR 341
           +R
Sbjct: 340 ER 341


>gi|332307428|ref|YP_004435279.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174757|gb|AEE24011.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 305

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 136/321 (42%), Gaps = 41/321 (12%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P  L +W   +AD M++LM FF+++   +  D      + ++     K +  + K  F  
Sbjct: 10  PAGLPAWMGTFADLMSLLMCFFVLLLSFSEMD------VLKF-----KQIAGSMKFAFGV 58

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           QN  E     K    I         D     T Q++  +  +  + + + ++ S   +  
Sbjct: 59  QNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAGGRQK 118

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
             R  +KG    + T  E+S  K         S+E++ A + KK  Q L K+I   L G 
Sbjct: 119 -QRGEQKG-GAAQQTASEQSSAKTTA------SQEEV-AKQMKKVAQQLEKEI---LDGA 166

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +          E+    ++I I   R    F   S+   P+   +L+KIG +LA     I
Sbjct: 167 IE--------MESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADMPGDI 215

Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
            I GH+D+    N + R NW LS  RA +  + L K+ G  E R++ I G A     +  
Sbjct: 216 EISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRMAVI-GKADTAPLLGE 274

Query: 325 D--PMNSANRRIDILVEDRQG 343
           D     S NRR++I V  +QG
Sbjct: 275 DDAQARSRNRRVEIAV--KQG 293


>gi|308187234|ref|YP_003931365.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans
          C9-1]
 gi|308057744|gb|ADO09916.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans
          C9-1]
          Length = 313

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          GSWKI YADFMT +MAFF+VMW+++  +      I  YF    K  +T      D  +P
Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADYFKTPLKVAITGGARSSDSDSP 82



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           ++      G+ I IID +N PMF    +   P    +L+ I  +L      IS+ GHTD 
Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIAPILNDIPNRISLAGHTDD 198

Query: 275 SPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNS 329
             F+    D    NW LS DRA ++ + L+  G+   ++ ++ G A   RLK      ++
Sbjct: 199 --FQYAGGDKGYSNWELSTDRANASRRELVMGGLDSGKVLRVLGMADTMRLKNRGG-NDA 255

Query: 330 ANRRIDILV 338
            NRRI +LV
Sbjct: 256 VNRRISLLV 264


>gi|168703394|ref|ZP_02735671.1| OmpA/MotB domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDE 86
          GSWK+ YADF+T +MAFFLVMW I A D   ++++  YF +P G +    S G   E
Sbjct: 6  GSWKVAYADFVTAMMAFFLVMW-IGAQDVKVRQSVANYFIDPAGVSKKPVSDGAVLE 61


>gi|77361278|ref|YP_340853.1| flagellar motor protein MotB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876189|emb|CAI87411.1| sodium-driven polar flagellar protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 306

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 37/314 (11%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P  L +W   +AD M++LM FF+++   +  D      + ++     K +  + K  F  
Sbjct: 10  PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           QN  E     K    I    T    +     T Q++  +  +  + + +  + S   +  
Sbjct: 59  QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
              D   G+         +S +KE+       + E+ ++   +++  DL KKI+  L   
Sbjct: 119 QRGDKRGGES--------RSTSKEQ-------ASEQAISAADQQQTNDLVKKIAQQLEKQ 163

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           + D  ++    E+    I+I I   R    F   S+   P+   ++Q+IG +L      I
Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQEIGVLLKDVPGEI 217

Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS 324
           ++ GHTD     N +  +NW LS  RA +    L K  G  ++R+  + G A  R  + +
Sbjct: 218 TVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVVGFDKNRM-MVVGRAETRPLVPN 276

Query: 325 DPMNS--ANRRIDI 336
           D       NRR++I
Sbjct: 277 DSNEDRRRNRRVEI 290


>gi|213025961|ref|ZP_03340408.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 65

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          GSWKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 14 GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF 52


>gi|239996641|ref|ZP_04717165.1| flagellar motor protein MotB [Alteromonas macleodii ATCC 27126]
          Length = 309

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 53/322 (16%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P  L +W   +AD M++LM FF+++   +  D    K I           M  + G+   
Sbjct: 11  PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQI--------AGSMKFAFGV--- 59

Query: 87  QNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQ------KKQYQRLENNIFYLSNSQQ 139
                   QNKI++  I +  +  +++ + G  +       ++Q   +   +       +
Sbjct: 60  --------QNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAGNE 111

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                    R  ++G    + T  E S + E++                + ++ +L KK+
Sbjct: 112 DSAGGRQKQRGEQRGGQ-SQQTATESSSSAEQST--------------DQSQMAELMKKV 156

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L   + D  V+    E+    + I I   R    F   S+   P+   VL+KIG +L
Sbjct: 157 AQQLEKQILDGSVE---MESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIGTLL 210

Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
           A     I I GH+D     N + R NW LS  RA +  + +  + G  E R+S + G A 
Sbjct: 211 ADVPGEIEISGHSDGQHIANELYRSNWDLSAQRAVAVAEAMRTAPGFDESRMS-VVGKAD 269

Query: 318 HR--LKIASDPMNSA-NRRIDI 336
               ++ A+ P + A NRR++I
Sbjct: 270 TDPIVENATSPSDRAQNRRVEI 291


>gi|225871803|ref|YP_002753257.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
 gi|225791684|gb|ACO31774.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
          Length = 262

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A++ ++ L+ + +++   L+  +A + V     +    G++IS+   R    +D  S+ P
Sbjct: 81  ALQTQENLEKMREQLQKKLAAQIAAHQVA---LQLGPDGLVISL---REAGFYDSGSATP 134

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKS- 302
            P ++  +  I   L      + I GHTD  P      D NW LS  RA +  ++L+++ 
Sbjct: 135 KPSSMGAVGIIAHELYQVPYALRIEGHTDNVPIHTAKFDSNWELSTARATTMARLLIENF 194

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           GV+  R+S  +G+A +   IAS+   +    NRR+DI+V
Sbjct: 195 GVAPQRLSA-AGYAQYH-PIASNATAAGRAENRRVDIIV 231


>gi|223936109|ref|ZP_03628023.1| OmpA/MotB domain protein [bacterium Ellin514]
 gi|223895331|gb|EEF61778.1| OmpA/MotB domain protein [bacterium Ellin514]
          Length = 280

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 192 LQDLAKKISSTLSGLV----ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           LQ   +K+  T  GL     +D   + V     +  + ++I+D+    MFD   +   P+
Sbjct: 93  LQKEKEKVGQTAKGLEDEMRSDLESRDVTISNLKGKLTVNILDRV---MFDSGEAAVKPD 149

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVS 305
              VL+KI  +LA   E+ I + GHTD  P RN    NW LS  RA +A   +  K+GV 
Sbjct: 150 GESVLRKIATILAGHPELKIQVIGHTDNVPIRNRFASNWELSAARAIAAVHFITEKAGVD 209

Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
             R+   +G+  +R  IA +        NRRI I +
Sbjct: 210 PRRVGA-AGYGEYR-PIADNSTAEGRARNRRIAITI 243


>gi|110677964|ref|YP_680971.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh
           114]
 gi|109454080|gb|ABG30285.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh
           114]
          Length = 279

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           V +N ++ ++   T  G++I +      P+F+ +S +P P    +++ +  V   +T  I
Sbjct: 146 VMENALEHIVTRITDEGLVIELFALDGLPLFEPNSDVPTPLMTQLVELVASVAFAATNDI 205

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +I  H  + P        W  S DRA     +L ++G+  +R+ +++G A  R     +P
Sbjct: 206 AIGAHVPSRPIVVAQNPVWDASTDRATRTRLMLQENGLEPERMQRVTGHA-DREPAHLNP 264

Query: 327 MNSANRRIDILV 338
           M + N R++I++
Sbjct: 265 MATRNSRVEIVL 276



 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 31/40 (77%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFF++MW++NAT +  ++ +  YF P
Sbjct: 27 AWKVAYADFVTAMMAFFMMMWLLNATTEQQRQGLADYFAP 66


>gi|153835783|ref|ZP_01988450.1| PomB [Vibrio harveyi HY01]
 gi|148867501|gb|EDL66863.1| PomB [Vibrio harveyi HY01]
          Length = 314

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 73/339 (21%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 7   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 66

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGVSDRAGGTKRDQGKLTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKK 190
             + + S H   S   D ++ +    S ++E   +SI K               A++R+ 
Sbjct: 127 GQSPETSTHNNQSAESDMQQQQSEQTSQEMETLMESIKK---------------ALERE- 170

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                               I +G + E    G  I +I  R    F + S+   P+   
Sbjct: 171 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++++I E++     ++ + GHTD  P    + R NW LS  RA S  Q           +
Sbjct: 209 LVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQ----------EM 258

Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336
            K+ GF+H RL++             SD   + NRR++I
Sbjct: 259 EKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRVEI 297


>gi|115360213|ref|YP_777351.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115285501|gb|ABI91017.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 228

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP+   VL +I   L+ H+T  I + GHTD++P  N   + NW LS  RA 
Sbjct: 121 LFNVGDARLLPDATPVLSEIARALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAG 180

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           S  + L + GV+  R++ I G A  +  +A D  P  + NRR+ I V
Sbjct: 181 SVVRYLAERGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 226


>gi|109897648|ref|YP_660903.1| flagellar motor protein MotB [Pseudoalteromonas atlantica T6c]
 gi|109699929|gb|ABG39849.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 134/329 (40%), Gaps = 57/329 (17%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMT 78
           P  L +W   +AD M++LM FF+++   +  D    K I       FG       K++  
Sbjct: 10  PAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 69

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            +  I  E  P       + D +  E I + ++++    T Q  ++Q    +       Q
Sbjct: 70  GTSVIAMEFRP------GRPDPTPIETIQQQTIEM----TQQMLEFQAGNEDSAGGRQKQ 119

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           + E  K    + +   +   K+T  ++  NK+                  KK  Q L K+
Sbjct: 120 RGEQ-KGGAAQQTASEQSSAKTTASQEEANKQ-----------------MKKVAQQLEKE 161

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   L G +          E+    ++I I   R    F   S+   P+   +L+KIG +
Sbjct: 162 I---LDGAIE--------MESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTL 207

Query: 259 LAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           LA     I I GH+D+    N + R NW LS  RA +  + L K+ G  E R++ I G A
Sbjct: 208 LADMPGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRMAVI-GKA 266

Query: 317 HHRLKIASD--PMNSANRRIDILVEDRQG 343
                +  D     S NRR++I +  +QG
Sbjct: 267 DTAPLLGEDDAQARSRNRRVEIAI--KQG 293


>gi|224368748|ref|YP_002602909.1| MotB1 [Desulfobacterium autotrophicum HRM2]
 gi|223691464|gb|ACN14747.1| MotB1 [Desulfobacterium autotrophicum HRM2]
          Length = 269

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 10/148 (6%)

Query: 197 KKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           ++I+S +  ++  N + G++    + TG++I++ D     +F    +I   +   +L K+
Sbjct: 113 REIASEVREMILFNKLGGLVNVSESETGVVITMSDLL---LFSAGEAILSEKGADILNKV 169

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             VLA     + ++GHTDASP  +  R   NW LS  RA +  ++L+ SG+    IS   
Sbjct: 170 TAVLAQLAYHVKVKGHTDASPI-STGRYPSNWELSASRAAAVVKLLVASGLDPSLISA-E 227

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339
           G+A +R    +D     + NRR++I+ E
Sbjct: 228 GYAQYRPVATNDTEKGRARNRRVEIVYE 255


>gi|183221220|ref|YP_001839216.1| hypothetical protein LEPBI_I1834 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911311|ref|YP_001962866.1| endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775987|gb|ABZ94288.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779642|gb|ABZ97940.1| Putative outer membrane protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 354

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L  ++K+ L+ L+++       L  +     +  +     ++I+I D+ +   FD  SS 
Sbjct: 187 LTKEQKRELERLSEQTKEFEEKLAKEITSGQIRLKRFHNKLIINIDDKIS---FDSGSSE 243

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  +  ++KI ++LA   E  I + GHTD  P +   R+NW LS +RA S  + ++++
Sbjct: 244 LKPAILPAIEKIRDILASYPENYIVVEGHTDNVPIKTKFRNNWHLSSERALSVLEFILQN 303

Query: 303 GVSEDRISKISGFAHHRLKIA-SDPMNSA-NRRIDILV 338
                +    +G+  H+  +  S   N A NRR+DI+V
Sbjct: 304 KNLNPKNFSSAGYGEHQPIVPNSTKENKALNRRVDIVV 341


>gi|330861238|emb|CBX71489.1| hypothetical protein YEW_CQ10840 [Yersinia enterocolitica W22703]
          Length = 239

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 8/97 (8%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L+ I  +L      IS+ GHTD  P+ +  R   NW LS DRA ++ + L+  G+ E +
Sbjct: 4   ILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDEGK 63

Query: 309 ISKISGFAHH-RLK--IASDPMNSANRRIDILVEDRQ 342
           + ++ G A   RLK   + DP+   NRRI ILV ++Q
Sbjct: 64  VLRVVGMASTMRLKEQASDDPV---NRRISILVLNKQ 97


>gi|91781366|ref|YP_556573.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans
           LB400]
 gi|91694026|gb|ABE37223.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans
           LB400]
          Length = 230

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LPE+  VLQ+I  VL   +   I + GHTD+ P      + NW LS  RA 
Sbjct: 123 LFNSGDARLLPESFAVLQQIAAVLRDRAKNNILVEGHTDSLPISTAKYESNWELSSARAG 182

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339
           +  +     G+   R++ I    +  L I +D + N+ANRR+ ILVE
Sbjct: 183 AVVRFFADRGIEGHRMAAIGRADNFPLIIGNDAVANAANRRVTILVE 229


>gi|289667244|ref|ZP_06488319.1| flagellar motor protein MotD [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 324

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N+    Q        L  +Q       SL  D
Sbjct: 59  -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  HDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALASNARTTLSTLASVLRD 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|307824498|ref|ZP_07654723.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307734482|gb|EFO05334.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 265

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +K +K+L  ++ +    L+  + DN+V        +    I +  + N+ M   S    L
Sbjct: 86  LKERKQLSQVSGQFEQVLAPFIQDNLVS-----VKKNDYWIEL--EMNSEMLFLSGEAEL 138

Query: 246 PE-TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
            +  I VLQKI EV+     +++I GHTD  P  NI  R NW LS  RA S     +K G
Sbjct: 139 SKKAIPVLQKIVEVINPLPNMVNIEGHTDNIPIDNIKFRSNWDLSSARATSVVHEFVKEG 198

Query: 304 VSEDRISKISGFAHHRL 320
           ++  R+S I     H +
Sbjct: 199 INPPRLSAIGYGEFHPI 215


>gi|220905442|ref|YP_002480754.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219869741|gb|ACL50076.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 235

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          G+WK+ YADF+T +MAFFL++W+++    +T+  +  YF+
Sbjct: 3  GAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFS 42


>gi|291280094|ref|YP_003496929.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1]
 gi|290754796|dbj|BAI81173.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1]
          Length = 249

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  GI + I+D   + +F   S+  LP  I +L+K+  V+  +   I + GHTD  P   
Sbjct: 111 TDKGISVRIMD---SVLFAPGSAEILPSAIPILEKLAAVMRDTPYNILVEGHTDDIPIST 167

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
                NW LS  RA +  + L+  GV  +++S      +H L     P N A NRR++I
Sbjct: 168 PKYPSNWELSTARAVAVVKFLISRGVKPEKLSAAGYAQYHPLVPNITPENRAKNRRVEI 226


>gi|289548706|ref|YP_003473694.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
 gi|289182323|gb|ADC89567.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
          Length = 243

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAY 293
           +FD  S+   P+   +L KI E+L      + + GHTD  P  +  R   NW LS  RA 
Sbjct: 126 LFDSGSADIKPQFYPILDKIAELLNSIPNPVEVEGHTDNIPI-STGRFPSNWELSTARAS 184

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQG 343
           S  +  +  GVS DR+ K SG+A  R  IAS+        NRR++I++ + +G
Sbjct: 185 SVVRYFIAKGVSPDRL-KASGYADTR-PIASNATPEGREQNRRVEIVIINIKG 235


>gi|163735541|ref|ZP_02142973.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149]
 gi|161391161|gb|EDQ15498.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149]
          Length = 279

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           V +N ++ ++   T  G++I +      P+F  +S  P P    +++ +  V   +T  I
Sbjct: 146 VMENALEHIVTRITDEGLVIELFALDGQPLFQPNSDDPTPLMTQLVELVASVAFAATNNI 205

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +I  H  + P        W +S DRA     +L ++G+  +R+ +++G A  R  +  +P
Sbjct: 206 AIGAHVPSRPIVVAQNPVWDVSTDRATRTRLMLQENGLEPERMHRVTGHA-DREPVHLNP 264

Query: 327 MNSANRRIDILV 338
           M + N R++I++
Sbjct: 265 MATRNSRVEIVL 276



 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          +WK+ YADF+T +MAFF++MW++NAT +  +  +  YF P
Sbjct: 27 AWKVAYADFVTAMMAFFMMMWLLNATTEQQRAGLADYFAP 66


>gi|89895779|ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51]
 gi|89335227|dbj|BAE84822.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           + I   L    ADN ++  L  +    G++ISI D   T +F+  +++  P+   +L KI
Sbjct: 109 ETIKQKLDKFAADNGIETKLVSSIEERGLVISIQD---TLLFESGAAVITPKAREILDKI 165

Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VLA +   I + GHTD  P   N    NW LS+ RA +   + M+  +  +++S  +G
Sbjct: 166 NNVLASAPNYIKVEGHTDNLPINTNRFPSNWELSVLRATNVVHI-MQEIIPAEQLSA-TG 223

Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338
           +  +R   A+D     + NRR+D+++
Sbjct: 224 YGEYRPLAANDTEAGRARNRRVDLVI 249


>gi|329904710|ref|ZP_08273911.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547854|gb|EGF32612.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 270

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 176 PPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           P   +++I  ++R+K  +  +A+ I + LS L++   V+  + +T+R G+ I I     +
Sbjct: 92  PAAERQRIELLRREKESMTSIARDILNVLSPLISSGKVR--VTQTSR-GVSIEI---NAS 145

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAY 293
            +F    +    E+   L  I +VL+  T  I I GHTD  P  N     NW LS  RA 
Sbjct: 146 VLFAPGEASLTNESGAALSAIAQVLSQDTHAIQIEGHTDNLPIGNATFPSNWELSSVRAS 205

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           S  ++   +G++E+R++ +   ++  +     P     NRR+++L+
Sbjct: 206 SVVRLFSNNGIAENRLTAVGHGSNKPVGSNDTPEGRVRNRRVEVLI 251



 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          DD P++   W I YADF+T+L AFF+VM+ I++ ++   + +
Sbjct: 20 DDAPSH-DRWLISYADFITLLFAFFVVMYAISSVNNGKYRVL 60


>gi|74317269|ref|YP_315009.1| flagellar motor protein MotD [Thiobacillus denitrificans ATCC
           25259]
 gi|74056764|gb|AAZ97204.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 263

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 26/177 (14%)

Query: 175 LPPLSKEKIL----AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           LPP  +++ L    A++ +  + ++A  +   +  LV +  V+      +R G+ I I  
Sbjct: 83  LPPEVRQRSLRQQQAIEEQAHMTEVASNLLDVMGPLVKEGKVR---VTQSRRGVSIEI-- 137

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSL 289
             N  +F+   +   PE++ VL+ +   L H    I I GHTD  P  N +   NW LS 
Sbjct: 138 NANV-LFEPGRAELAPESLAVLRAVAAQLRHEPFNIEITGHTDIVPISNSVFASNWELSA 196

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338
            RA S  ++L   G++  R+  I        + AS P+ S         NRR+++++
Sbjct: 197 VRATSVVRLLADGGIAPSRLFAIG-------REASQPIASNGTAEGRARNRRVELMI 246



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74
          ID    N   W + YADF+T+L AFF+VM+ ++A ++   + +       FGK
Sbjct: 16 IDSDHENHDRWLVSYADFITLLFAFFVVMYAVSAVNEGKYRVLANALGGAFGK 68


>gi|255527289|ref|ZP_05394169.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7]
 gi|255509027|gb|EET85387.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7]
          Length = 182

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E    G+++S+   R+T  F+   +  +  +   L +IG++L      + I GHTD 
Sbjct: 14  VTTEVDERGLVVSL---RDTLFFETGKAEVIAASQGKLVEIGKILNQLDNTMRIEGHTDN 70

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSAN 331
            P  N    DNW+LS  RA +  ++L+ +GV   ++S ++ +  +R  L  +++   + N
Sbjct: 71  VPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YGEYRPVLDNSTEDGRARN 129

Query: 332 RRIDILV 338
           RR+DI+V
Sbjct: 130 RRVDIIV 136


>gi|78484731|ref|YP_390656.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78363017|gb|ABB40982.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
          Length = 248

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           ++ P   G+W+I  AD MT LM FFLVMW+ +  D D +KA  +     G      S   
Sbjct: 8   EECPEEGGAWEIALADLMTTLMVFFLVMWLTSIVDPDKRKAFVEALVGEGAGGENISA-- 65

Query: 84  FDEQNPPERSSQNKIDL 100
            DE N P   S  K DL
Sbjct: 66  -DETNTPREPSIMKEDL 81



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+++GE LA   + ISI G+TD+ P  N+    NW LS  RA +  +  +  GV ++ ++
Sbjct: 135 LEQLGETLAGRDQEISITGYTDSIPIENLQFPSNWELSAARAATVARTFIYMGVDKNLVT 194

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
            ISG A +      A+    S NRR+ ILV
Sbjct: 195 -ISGKADNDAVAPNATAYGRSLNRRVIILV 223


>gi|189426486|ref|YP_001953663.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189422745|gb|ACD97143.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 280

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           M  +K  +++A  I + L   V       V    T+ G++IS+   +    FD  S+   
Sbjct: 113 MAGEKEFREMASAIEAYL---VKQGFQNKVALSITQRGLVISL---KEAGFFDSGSAKLK 166

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-G 303
            E+I  L+ I + L+       + GHTD+ P R+   R NW LS  RA +    L+ S G
Sbjct: 167 SESIQTLRGIADTLSRYANRFRVEGHTDSMPIRSTEFRSNWELSTARATNVIHFLIDSAG 226

Query: 304 VSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            S + +S + G+   +  +  ++    + NRR+DI++
Sbjct: 227 FSPESLSAV-GYGEFQPVVDNSTAEQRAKNRRVDIVL 262


>gi|21231338|ref|NP_637255.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768610|ref|YP_243372.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112997|gb|AAM41179.1| MotB protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573942|gb|AAY49352.1| MotB protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 324

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L TA  G     +P  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSKAASP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                                     L N+Q       SL  D 
Sbjct: 67  ----------------------------------------VQLGNTQ-------SLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D +A++++ T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVAQQLNKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS L+   ++      T R   L   ++  +  +F   S++        L  +  VL  +
Sbjct: 140 LSPLIDKQLI------TIRRRDLWIEVEINSDILFVTGSALLAGSARGTLSTLAAVLRDA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|325916150|ref|ZP_08178436.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537641|gb|EGD09351.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG +               
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGS--------------- 60

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                           + N+  +++G T                           SL  D
Sbjct: 61  ----------------STNASPVQLGKT--------------------------QSLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TLS L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLSPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSATLAGGARGTLSTLASVLRD 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P   +    NW LS  RA S   +    G++  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATVQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +    ++   +ANRR+ +++
Sbjct: 252 RADNTTEAGRNANRRVVLII 271


>gi|188991572|ref|YP_001903582.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733332|emb|CAP51531.1| motB1 [Xanthomonas campestris pv. campestris]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L TA  G     +P  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSKAASP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                                     L N+Q       SL  D 
Sbjct: 67  ----------------------------------------VQLGNTQ-------SLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D +A++++ T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVAQQLNKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS L+   ++      T R   L   ++  +  +F   S++        L  +  VL  +
Sbjct: 140 LSPLIDKQLI------TIRRRDLWIEVEINSDILFVTGSALLAGSARGTLSTLAAVLRDA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|303325924|ref|ZP_07356367.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863840|gb|EFL86771.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3]
          Length = 235

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +WK+ YADF+T +MAFFL++W++N    +T+  +  YF+
Sbjct: 4  AWKVAYADFVTAMMAFFLLLWVLNMVPPETRAGLAAYFS 42



 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 15/154 (9%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A+ +K +   +A  +  + SG+ AD++           G+ + +    +  MF   S   
Sbjct: 83  AIAQKIKQMLMADAVPQSSSGISADDV-----------GVQLRV---NSDVMFKAGSVDF 128

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           LPE   VL  + ++L      + +RGH D++  R      W LS  RA +    L   GV
Sbjct: 129 LPEGEKVLGSVLQILKEYNLYLVVRGHADSTEARPPYASAWELSGARAAAVLHYLADHGV 188

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA-NRRIDIL 337
              R+  ++      LK   D  + A NRR++  
Sbjct: 189 KPTRLRGVAYGDTRPLKPGIDEESRAVNRRVEFF 222


>gi|152995178|ref|YP_001340013.1| flagellar motor protein MotB [Marinomonas sp. MWYL1]
 gi|150836102|gb|ABR70078.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 330

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 133/320 (41%), Gaps = 53/320 (16%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
            L ++   +AD M++LM FF+++  ++  + D  K     F     +L            
Sbjct: 15  GLPAYMGTFADLMSLLMCFFVLL--LSFAEMDVLK-----FKQLAGSL------------ 55

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                   K+   +   +  +S+ +      Q+    R E         +     +N+L 
Sbjct: 56  --------KVAFGVQREVEADSIPMGTSVIAQEFSPGRPEPTPINEVKQKADSTPENTL- 106

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST------ 202
                 + +CK  D E  + ++ N   P      +  + + K   D  KKI  T      
Sbjct: 107 ------EVICKPGDAE--LKEQSNSGSP----APVTFVDKSKADLDKEKKIQETESNAQM 154

Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           ++ ++ + + KG V  ET    I I I DQ +   F+  S+    + I V+  I +VL  
Sbjct: 155 IASVMREEVSKGTVEIETQEQTITIRIKDQGS---FESGSAELNYDFIPVIDLIRDVLVG 211

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               IS+ GHTD  P  +   R NW+LS  RA S  + L  +G  +     ++G+A  R 
Sbjct: 212 IQGTISVEGHTDNVPIASSRFRSNWQLSSARAISVAEELFSTGQLDQGRFAVTGYADTRP 271

Query: 321 KIASD-PMNSA-NRRIDILV 338
            + +D P + A NRR++I++
Sbjct: 272 LVPNDTPAHRATNRRVEIII 291


>gi|294624200|ref|ZP_06702921.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665070|ref|ZP_06730375.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601500|gb|EFF45516.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605151|gb|EFF48497.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N+    Q        L  +Q       SL  D
Sbjct: 59  -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLRE 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|21242652|ref|NP_642234.1| flagellar motor protein MotD [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108121|gb|AAM36770.1| MotB protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N+    Q        L  +Q       SL  D
Sbjct: 59  -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLRE 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|39933998|ref|NP_946274.1| hypothetical protein RPA0921 [Rhodopseudomonas palustris CGA009]
 gi|192289418|ref|YP_001990023.1| hypothetical protein Rpal_0991 [Rhodopseudomonas palustris TIE-1]
 gi|39647845|emb|CAE26365.1| possible flagellar motor protein MotB [Rhodopseudomonas palustris
           CGA009]
 gi|192283167|gb|ACE99547.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 341

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287
            FD   ++ LPE    L K+ + L        A    V+ + GHTD  P     + NW L
Sbjct: 227 FFDTGQALLLPEGRAELDKVADALKELDKKIPAELPWVVRVDGHTDKRPITGSFKSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341
           S  RA S  Q LM  GV   R+   +GFA  + L  A +D     NRRI++ + +R
Sbjct: 287 SSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTDDAYKRNRRIELKLTER 341


>gi|269796387|ref|YP_003315842.1| flagellar motor protein [Sanguibacter keddieii DSM 10542]
 gi|269098572|gb|ACZ23008.1| flagellar motor protein [Sanguibacter keddieii DSM 10542]
          Length = 295

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 126/320 (39%), Gaps = 83/320 (25%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W + YAD MTVL+A F+V++ I+  D    D  ++++   FN    ++++   G+  + N
Sbjct: 24  WLVSYADMMTVLVALFIVLYAISQVDEVKYDQLRQSLAAGFNAPQVSILSDGAGVLTD-N 82

Query: 89  PPER---SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           P E    +    I  ++DE  + +  D   G+ +           + Y S ++ +E    
Sbjct: 83  PTEAVVPAVDKIIPSTVDESTSGDGGD-STGAGDAASPADIAAARVEYQSFAELAEKIDT 141

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +L     +G                            ++  +  +R             G
Sbjct: 142 ALAAGGMEG----------------------------VVQFRIDER-------------G 160

Query: 206 LVADNIVKGVLFETTRTGILI----SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           LV   I   V F  + + +L     +++D   TP       +PLP               
Sbjct: 161 LVIGMITDEVFF-ASESAVLTPTSQAVVDTM-TPFM-----LPLPNE------------- 200

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
               ISI GH D+ P    A  NW LS DRA    + ++++ G+   RIS + G+   R 
Sbjct: 201 ----ISIEGHADSVPTARYA-SNWELSSDRATQVLRRMVEADGMPPTRISAV-GYGDSRP 254

Query: 321 KIASDPMN--SANRRIDILV 338
              ++     +ANRR+D++V
Sbjct: 255 LQPNETAEGLTANRRVDLVV 274


>gi|308048595|ref|YP_003912161.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307630785|gb|ADN75087.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 314

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 130/327 (39%), Gaps = 63/327 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMTASKGI 83
           +W   +AD  T+LM FF+++   +  D    K I       FG       K++   +  I
Sbjct: 16  AWMATFADLATLLMCFFVLLLAFSEMDVLKFKQIAGSMKYAFGVQNKVEVKDIPRGTSVI 75

Query: 84  FDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ--- 138
             E  P  R     I++   + +  T++ ++ + G ++Q    Q    N    ++SQ   
Sbjct: 76  AQEFRP-GRPDPTPIEVIQQQTVEFTRDMLNYQPGESDQAGGQQNQSGNSRGGTSSQTAN 134

Query: 139 --QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             ++E    S TR S    D                                   + +L 
Sbjct: 135 QPRAEQSNQSQTRTSASDAD----------------------------------NVNELT 160

Query: 197 KKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KKI+  L     D I+ G +  E+    I+I I   R    F   S+   P    V+  +
Sbjct: 161 KKIAQQLE----DQILDGAIEVESLGQQIIIRI---REKGAFPAGSAFLQPRFRPVIHAV 213

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKIS 313
           G +L     +IS+ GHTD +   N + R NW LS  RA S A++++   G    R+ ++ 
Sbjct: 214 GNLLKDVPGIISVTGHTDNTTIDNELYRSNWELSTQRAVSVAHELVKVEGFDPGRM-ELR 272

Query: 314 GFAHHRLKIASDPMNS--ANRRIDILV 338
           G A +   +++D       NRR++I +
Sbjct: 273 GVAENEPLVSNDTWEGRVRNRRVEITI 299


>gi|302343737|ref|YP_003808266.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640350|gb|ADK85672.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 245

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIA-RDN 284
           ++I   N  +F    +   P+ +  ++KI  VLAH +  IS+ GHTDAS P       DN
Sbjct: 124 TVITLANDLLFAPGKAELSPQAVESIKKIASVLAHGSANISVEGHTDASAPGAGSGFGDN 183

Query: 285 WRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
           W LSL RA++    L+   G+  DR+ +++     R  + +D P   A NRR +I+V
Sbjct: 184 WSLSLARAHAVLLRLIDPGGLKPDRL-RLAALGDSRPLVPNDTPQRRAMNRRTEIVV 239


>gi|285018158|ref|YP_003375869.1| flagellar motor protein [Xanthomonas albilineans GPE PC73]
 gi|283473376|emb|CBA15881.1| probable flagellar motor protein [Xanthomonas albilineans]
          Length = 317

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 126/318 (39%), Gaps = 64/318 (20%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           D   N  +W I YAD MT+L+AFF+VM+ ++  +    + +         N M A+ G  
Sbjct: 8   DEHTNHEAWAIPYADLMTLLLAFFVVMYALSTVNAAKYRVM--------ANAMNAAFG-- 57

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
                   ++Q    + + E   +   D +            L+ N              
Sbjct: 58  -------GTAQTMHPVQVGEQPLQGQSDARATPIQSSPALSILDPNRL----------PA 100

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            SL R ++  +D  +    ++ +++                         +A+++ S LS
Sbjct: 101 TSLPRPADALRDEQQLRRAQQQLDR-------------------------IAERLDSALS 135

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHST 263
            L+   ++        R+G+ I +  + N+ +   S S  L ++    L ++ ++LA   
Sbjct: 136 PLIQKKLIT-----VHRSGLWIEV--EINSDILFGSGSATLDQSAHATLAQLAQILASVP 188

Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             + + G+TD +P        NW LS  RA S   +    G+   R+S I G+   R   
Sbjct: 189 NGVRVEGYTDNTPIATAQFPSNWELSAARAASVVHLFADQGLQPSRLSMI-GYGQFRPHA 247

Query: 323 ASDPMNS--ANRRIDILV 338
           ++D  +   ANRR+ +++
Sbjct: 248 SNDTASGRNANRRVVLVI 265


>gi|149191181|ref|ZP_01869439.1| chemotaxis LafU protein [Vibrio shilonii AK1]
 gi|148835019|gb|EDL51998.1| chemotaxis LafU protein [Vibrio shilonii AK1]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ L+ LA+++   LSG+ A   +  V    T  G+ + I D    PMF +  +   P  
Sbjct: 113 QQELEVLAQRVKQELSGIDA---LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKVTP-- 167

Query: 249 IVVLQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
               Q +   LA   E I     I GHTDAS ++     NW LS +RA SA   L K G+
Sbjct: 168 --FYQDLLLNLAGLLEKIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLDKGGL 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            E  I +++G +       ++  +  NRRI++ +
Sbjct: 226 QERHIFQVTGMSDTAPIDFNNAKSGINRRIELYI 259



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          G WK+  AD M  LM  FLV+WI+   D D +K +  YF
Sbjct: 22 GGWKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60


>gi|166711987|ref|ZP_02243194.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 324

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 121/319 (37%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L +A  G     NP  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTSAFGGSSTAANP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                +++G T                           +L  D 
Sbjct: 67  ---------------------VQLGKTQ--------------------------TLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D + +++S T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  +
Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|118581870|ref|YP_903120.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504580|gb|ABL01063.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 271

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +K +   +D  +  SS  + LV       V    TR G+++S+   +    FD   +   
Sbjct: 99  VKTRATEKDFRQIKSSIEAYLVKQGAQSKVNLTITRRGLIVSL---KEAGFFDSGQAQIK 155

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS- 302
           P    ++  I EV+   +  + + GHTD  P  N ++   NW LS  RA +  + L+++ 
Sbjct: 156 PTAYELINTIAEVMTQYSNPLRLEGHTDNVPI-NTSQFPSNWELSTARAVNGLKYLIRNF 214

Query: 303 GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           GV  D+IS ++G+A  R     A+    + NRR+D+++   +G
Sbjct: 215 GVDPDKIS-VAGYAEFRPMADNATPEGRAKNRRVDLVMLSNEG 256


>gi|212636367|ref|YP_002312892.1| flagellar motor protein MotB [Shewanella piezotolerans WP3]
 gi|212557851|gb|ACJ30305.1| MotB protein [Shewanella piezotolerans WP3]
          Length = 322

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 138/347 (39%), Gaps = 63/347 (18%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73
           + KKV  D  P     W   +AD M++LM FF+++   +  D    K I       FG  
Sbjct: 1   MAKKVKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 74  -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
                K++   +  I  E  P  PE +    I+   +E +T+  ++ + G  +     Q+
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPESTPIEIINQQTNE-MTEPMLEFQEGEDDSAGGVQQ 119

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                      +Q     +S  ++ E  + L KST   KS   +          +++   
Sbjct: 120 --------QRGEQRGGESSSTAQEQEDAQALAKSTSESKSEASKAEAAAQEEINQQV--- 168

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245
             KK  Q+L K+            IV G +  E+    I+I I   R    F   S    
Sbjct: 169 --KKMAQELNKE------------IVDGAIEIESLGQQIIIRI---REKGAFASGSGFLQ 211

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGV 304
           P    +++++GE+L     ++++ GHTD     N +   NW LS  RA +    ++    
Sbjct: 212 PRFKPIVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVAHEMI---- 267

Query: 305 SEDRISKISGFAHHRLKI----ASDPM--------NSANRRIDILVE 339
                 ++ GF   RLK+    +S P+         + NRR++I +E
Sbjct: 268 ------RVKGFDQQRLKVVGMASSAPLVENNSQANRARNRRVEIAIE 308


>gi|209694505|ref|YP_002262433.1| flagellar motor protein MotB [Aliivibrio salmonicida LFI1238]
 gi|208008456|emb|CAQ78622.1| sodium-driven polar flagellar protein MotB [Aliivibrio salmonicida
           LFI1238]
          Length = 309

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 66/323 (20%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85
           W  ++AD  T+LM FF+++   +  D    K I       FG +N++      KG  +  
Sbjct: 16  WMAIFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIPKGTSVIA 75

Query: 86  EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           ++  P R     I++ + +   I + ++D   G +++    +R   N+        S   
Sbjct: 76  QEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGSKREAGNL--TGGESSSTST 133

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +   D+E         +LE++I K               A++R+              
Sbjct: 134 QTNAQSDAESQSQNQSQQELEETIKK---------------ALERE-------------- 164

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +A+  V+    E     ++I I   R    F   S+   P+   ++++IGE++    
Sbjct: 165 ---IAEGAVE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIGELVKDVP 215

Query: 264 EVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLK 321
            +I + GHTD  P  + + R NW LS  RA S  +++L   G + DR+ ++ G A     
Sbjct: 216 GIIRVSGHTDNQPLESELYRSNWDLSAQRAVSVGHEMLRVKGFNSDRL-RVRGMA----- 269

Query: 322 IASDPMN--------SANRRIDI 336
            +++P+         + NRR++I
Sbjct: 270 -STEPLGPNKTAAQRARNRRVEI 291


>gi|116878566|ref|YP_357384.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380]
 gi|114843202|gb|ABA89214.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380]
          Length = 299

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 17/149 (11%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTP------MFDKSSSIPLPETIVVLQKIGEVLAHS 262
           D++V  +  E  R  + IS +  R T       +FD   +   P  + +L++IG +L ++
Sbjct: 148 DDLVDKLESEIKRGEVTISDLQGRLTVNMVEKILFDSGKADIKPAGLNILKRIGTILKNT 207

Query: 263 TE-VISIRGHTDASP----FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFA 316
            +  I + GHTD  P     ++I R NW LS  RA S    L  + G+S +R+S + GF 
Sbjct: 208 ADKSIRVEGHTDNVPISPRLKDIYRSNWELSTARAGSVVHFLQDRLGISGERLS-VCGFG 266

Query: 317 HHRLKIASDPM---NSANRRIDILVEDRQ 342
            + + IAS+      + NRRI I++  +Q
Sbjct: 267 PY-MPIASNATAQGRAQNRRIQIVLVPQQ 294


>gi|312879597|ref|ZP_07739397.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782888|gb|EFQ23286.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260]
          Length = 242

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 9/154 (5%)

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KR +   + ++  L  L   + + K +  +  + G+ +S+ +Q    +F    +   P +
Sbjct: 86  KRTEQFKQGVAQQLQALAEREGLQKEITVKVNQRGVTVSLSEQF---LFAPGGADLSPLS 142

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSE 306
             VL KIG++L      +++ GHTD +P R  + +DNW LS  RA      L  + G+S 
Sbjct: 143 RRVLFKIGQILKTFPNQLAVEGHTDNAPLRGGLYKDNWGLSAGRAAVVASYLAGTVGLSP 202

Query: 307 DRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
           +R+  + G+   +  + +D P + A NRR+D+++
Sbjct: 203 NRLEAV-GYGSAKPIVPNDTPEHRALNRRVDLVL 235


>gi|115522688|ref|YP_779599.1| hypothetical protein RPE_0661 [Rhodopseudomonas palustris BisA53]
 gi|115516635|gb|ABJ04619.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 341

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPFRNIARDNWRL 287
            FD   ++ LPE    L K+  VL           T V+ + GHTD  P     + NW L
Sbjct: 227 FFDTGQAVLLPEGRAELDKLASVLIDLGKQIPDEITWVLRVDGHTDVRPITGAFKSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS-DPMNSANRRIDILVEDR 341
           S  RA S  Q L+  GV   R+   +GFA  + L +A+ +     NRRI++ + +R
Sbjct: 287 SSARAISVVQYLVTLGVPAQRLVA-AGFAEFQPLDVAATEEAYRRNRRIELKLTER 341


>gi|332702472|ref|ZP_08422560.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552621|gb|EGJ49665.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 239

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRL 287
           I+      FD  S+   P+ + +L+KIG VL      +++ GHTD  P +  A D NW L
Sbjct: 117 INLHGPAFFDSGSAELTPDAVRMLRKIGVVLVGVPYHLTVEGHTDNVPIQTGAFDSNWEL 176

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMN-SANRRIDILV 338
           S  RA    + L+  GV  D + KI G A  R  +       A+ P N + NRR+ ILV
Sbjct: 177 SALRATRVARFLISQGVRPDNM-KIVGLADTRPLLPNNDASGAALPENQTRNRRVVILV 234


>gi|332141875|ref|YP_004427613.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551897|gb|AEA98615.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 309

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 131/328 (39%), Gaps = 65/328 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMT 78
           P  L +W   +AD M++LM FF+++   +  D    K I       FG       K++  
Sbjct: 11  PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 70

Query: 79  ASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQK--KQYQRLENNIFYL 134
            +  I  E  P  P+ +    I    +E +T+  ++ + G+ +    +Q QR E      
Sbjct: 71  GTSVIAMEFRPGKPDPTPIESIQQQTNE-MTQQMLEFQAGNEDSAGGRQKQRGE------ 123

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
              Q+    + + T+ S   +   +STD                          + ++ +
Sbjct: 124 ---QRGGQSQQTATQSSSSAE---QSTD--------------------------QSQMAE 151

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L KK++  L   + D  V+    E+    + I I   R    F   S+   P+   VL+K
Sbjct: 152 LMKKVAQQLEKQILDGSVE---MESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRK 205

Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
           IG +LA     I I GH+D     N + R NW LS  RA +  + +  + G  E R+S +
Sbjct: 206 IGTLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRMSVV 265

Query: 313 SGFAHHRLKIASDPMNSA----NRRIDI 336
                    I  +   SA    NRR++I
Sbjct: 266 G--KADTAPIVENATTSADRAKNRRVEI 291


>gi|219670208|ref|YP_002460643.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219540468|gb|ACL22207.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 275

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           + I   L    ADN ++  L  +    G++ISI D   T +F+  +++  P+   +L KI
Sbjct: 109 ETIKQKLDKFAADNGIETKLVSSIEERGLVISIQD---TLLFESGAAVITPKAREILDKI 165

Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VLA +   I + GHTD  P   N    NW LS+ RA +   + M+  +  +++S  +G
Sbjct: 166 NNVLASAPNYIKVEGHTDNLPINTNRFPSNWELSVLRATNVVHI-MQEIIPAEQLSA-TG 223

Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338
           +  +R   ++D     + NRR+D+++
Sbjct: 224 YGEYRPLTSNDTEAGRARNRRVDLVI 249


>gi|47566111|ref|ZP_00237149.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus G9241]
 gi|47557028|gb|EAL15358.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus G9241]
          Length = 225

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ DL KK    L   V +N + 
Sbjct: 43  KMLEKFSDAEQVDAKVMGNTIPDISHEKNDEKMASKKRMDDLYKK----LKAYVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNPIVVEGHTD 155

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
           + P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N   
Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215

Query: 331 NRRIDILVED 340
           NRR+ I +++
Sbjct: 216 NRRVVIYIKE 225


>gi|293410201|ref|ZP_06653777.1| flagellar motor protein MotB [Escherichia coli B354]
 gi|291470669|gb|EFF13153.1| flagellar motor protein MotB [Escherichia coli B354]
          Length = 58

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57
          KNQ +   ++ ++K       +  GSWKI YADFMT +MAFFLVMW+I+ +
Sbjct: 2  KNQAHPIIVVKRRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISIS 50


>gi|148974248|ref|ZP_01811781.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3]
 gi|145965945|gb|EDK31193.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3]
          Length = 324

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ L+ LA++I+  LSG+ A   +  V    T  G  + I D    PMF +  +   P  
Sbjct: 113 QQELELLAQRITQELSGIDA---LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKVTP-- 167

Query: 249 IVVLQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
               Q +   LA   E I     I GHTDAS ++     NW LS +RA SA   L K G+
Sbjct: 168 --FYQDLLLNLAGLLENIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLNKGGL 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            E  I +++G +        +  +  NRRI++ +
Sbjct: 226 QERHIFQVTGMSDTAPVDYENTKSGINRRIELYI 259



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          III+KK          G WK+  AD M  LM  FLV+WI+   D D +K +  YF
Sbjct: 6  IIIQKKGRRKRNELQHGGWKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60


>gi|119478742|ref|ZP_01618600.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143]
 gi|119448371|gb|EAW29625.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143]
          Length = 130

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +LA     ISI+GHTD +P +    R NW LS  RA S    L +  +   R  ++SGFA
Sbjct: 1   MLATKKGAISIQGHTDNNPIKTTRFRSNWELSTSRAVSVAHALFEGNILNPRRVEVSGFA 60

Query: 317 HHRLKIASDPMN--SANRRIDILVEDRQG 343
             R   ++D +   + NRR++I+++   G
Sbjct: 61  ETRPLSSNDTVEGRAKNRRVEIVIQQGLG 89


>gi|171318847|ref|ZP_02907983.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171095946|gb|EDT40882.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 226

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP+   VL +I   L+ H+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 119 LFNVGDARLLPDATPVLSQIARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 178

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           S  + L   GV+  R++ I G A  +  +A D  P  + NRR+ I V
Sbjct: 179 SVVRYLADRGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 224


>gi|206562638|ref|YP_002233401.1| OmpA family protein [Burkholderia cenocepacia J2315]
 gi|198038678|emb|CAR54638.1| OmpA family protein [Burkholderia cenocepacia J2315]
          Length = 223

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHATGDILVEGHTDSVPIANAKYESNWELSSARAG 175

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           S  + L + GV+  R++ I G A  +  +A D   S   NRR+ I V
Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTIFV 221


>gi|289662354|ref|ZP_06483935.1| flagellar motor protein MotD [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 324

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N     Q        L  +Q       +L  D
Sbjct: 59  -------------------------GSSNAASPVQ--------LGKTQ-------TLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARATLSTLASVLRD 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|255654793|ref|ZP_05400202.1| putative chemotaxis protein [Clostridium difficile QCD-23m63]
 gi|296449538|ref|ZP_06891315.1| chemotaxis protein MotB [Clostridium difficile NAP08]
 gi|296261602|gb|EFH08420.1| chemotaxis protein MotB [Clostridium difficile NAP08]
          Length = 246

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   ++    +   + +IG++L      I + GHTD    +N   
Sbjct: 116 GLVISL---KDTILFDTGKAVVKDNSREKIIQIGKMLNEMNSYIRVEGHTDNMSIKNSEF 172

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231

Query: 339 ED 340
            D
Sbjct: 232 VD 233



 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66


>gi|152975140|ref|YP_001374657.1| flagellar motor protein MotS [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023892|gb|ABS21662.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           +P +S EK    +  KKR+ +L KK    L G V +N ++ V      TG+ I I+D   
Sbjct: 63  IPDISHEKNSEKVSSKKRMDNLYKK----LKGYVTENGIQEVQVYREDTGVSIVIVDNL- 117

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
             +FD   +   PE   ++ ++          I + GHTD+ P RN     NW LS  RA
Sbjct: 118 --IFDTGDANVKPEAKEIISRLAGFFQSVPNPIVVEGHTDSRPIRNAKFPSNWELSSARA 175

Query: 293 YSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVED 340
            +    L++   +  +R++ + G+A  +    +D P N A NRR+ I V++
Sbjct: 176 ANMIHHLIEVYEIDPNRLAAV-GYADTKPVAPNDSPDNWAKNRRVVIYVKE 225


>gi|296878139|ref|ZP_06902154.1| chemotaxis protein MotB [Clostridium difficile NAP07]
 gi|296430892|gb|EFH16724.1| chemotaxis protein MotB [Clostridium difficile NAP07]
          Length = 248

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   ++    +   + +IG++L      I + GHTD    +N   
Sbjct: 118 GLVISL---KDTILFDTGKAVVKDNSREKIIQIGKMLNEMNSYIRVEGHTDNMSIKNSEF 174

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233

Query: 339 ED 340
            D
Sbjct: 234 VD 235



 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68


>gi|254248921|ref|ZP_04942241.1| OmpA/MotB [Burkholderia cenocepacia PC184]
 gi|124875422|gb|EAY65412.1| OmpA/MotB [Burkholderia cenocepacia PC184]
          Length = 223

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIANAKYESNWELSSARAG 175

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           S  + L + GV+  R++ I G A  +  +A D   S   NRR+ I V
Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTIFV 221


>gi|170700356|ref|ZP_02891367.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170134743|gb|EDT03060.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 228

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F    +  LP+   VL +I   L+ H+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 121 LFSVGDARLLPDATPVLSQIARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 180

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           S  + L   GV+  R++ I G A  +  +A D  P  + NRR+ I V
Sbjct: 181 SVVRYLADRGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 226


>gi|78221681|ref|YP_383428.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78192936|gb|ABB30703.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 267

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T+ G+++S+   +    FD  S+I       +L K+ E LA  +  + + GHTD  P  +
Sbjct: 133 TQRGLVVSL---KEAGFFDSGSAIVRESAYPLLAKVAESLAGYSNAVRVEGHTDTMPISS 189

Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            +   NW LS  RA +    L KS   +      +GF  +R     A+    S NRR+DI
Sbjct: 190 PLFPSNWELSTARATNIVHFLTKSYDFQPSAISAAGFGEYRPIADNATAEGRSKNRRVDI 249

Query: 337 LVEDRQG 343
           ++   +G
Sbjct: 250 VLLSGEG 256


>gi|288573018|ref|ZP_06391375.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568759|gb|EFC90316.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 240

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
           G+ +S+ DQ   P+      + + PE   +L K+GE L      +++ GHTD  P R   
Sbjct: 118 GVTVSLSDQLLFPL----GGVDIRPEGKRLLAKLGEFLKGRIPALAVEGHTDDRPLRGGP 173

Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
            RDNW LS  RA      L+ +      I +  G+   R  +   SD   S NRR+D+++
Sbjct: 174 YRDNWGLSAIRAAIVASYLVDAAGISPSIVQAVGYGPFRPVVPNDSDENRSRNRRVDLVI 233


>gi|60115453|dbj|BAD90019.1| MotB [Pectobacterium carotovorum subsp. carotovorum]
          Length = 175

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 4  QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61


>gi|309789304|ref|ZP_07683895.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
 gi|308922839|gb|EFP68355.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
          Length = 137

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAY 293
           MF   S+   P    +L+ I  VL      IS+ GHTD  P+ +  +   NW LS DRA 
Sbjct: 1   MFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRAN 60

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q
Sbjct: 61  ASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQ 109


>gi|302874600|ref|YP_003843233.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690789|ref|ZP_07633235.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577457|gb|ADL51469.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 236

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD   +    +    L KI E++A    +I I GHTD  P   + ++N  LS  RA S 
Sbjct: 126 LFDSGKAEIKTDFATTLNKISEIIASIGNLIEIEGHTDNVPISGVYKNNRDLSYARANSV 185

Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +     G+S++R ++K  G  +      SD   + NRR++IL+
Sbjct: 186 LEYFASRGISQNRMVTKAYGEWYPIKPNDSDANRAENRRVNILI 229


>gi|218778865|ref|YP_002430183.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760249|gb|ACL02715.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 259

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 7/110 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA 292
           T MFD  SS   PE   +L  + +VL   +  + I GH+D++P  ++  D NW LSL RA
Sbjct: 150 TVMFDPGSSRIRPEIYPLLDVLAQVLKAVSGRVLIIGHSDSTPMHSVQYDSNWDLSLSRA 209

Query: 293 YSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
            +  Y    +  +SEDR+  + G  + +  IAS+   +    NRR++I++
Sbjct: 210 LNVLYYFTTEHDLSEDRLG-VGGMGNTK-PIASNKTQAGRDKNRRVEIVI 257


>gi|119472095|ref|ZP_01614326.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7]
 gi|119445115|gb|EAW26408.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7]
          Length = 306

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 131/316 (41%), Gaps = 37/316 (11%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P  L +W   +AD M++LM FF+++   +  D      + ++     K +  + K  F  
Sbjct: 10  PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           QN  E     K    I    T    +     T Q++  +  +  + + +  + S   +  
Sbjct: 59  QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
              D   G+   +ST  E+S              E+ ++   +++  +L KKI+  L   
Sbjct: 119 QRGDKRGGES--RSTSQEQS-------------SEQAISAADQEQTNELVKKIAQQLERQ 163

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           + D  ++    E+    I+I I   R    F   S+   P+   ++Q IGE+L      I
Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGELLKDVPGEI 217

Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           ++ GHTD     N +  +NW LS  RA + A ++    G  + R+  + G A  R  + +
Sbjct: 218 TVSGHTDDFQVSNELYVNNWDLSSKRAVAVASELQTVQGFDKTRM-MVVGRAETRPLVPN 276

Query: 325 DPMNS--ANRRIDILV 338
           +       NRR++I +
Sbjct: 277 ETNEDRRRNRRVEISI 292


>gi|325928224|ref|ZP_08189430.1| flagellar motor protein [Xanthomonas perforans 91-118]
 gi|325541413|gb|EGD12949.1| flagellar motor protein [Xanthomonas perforans 91-118]
          Length = 324

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N+    Q        L  +Q       +L  D
Sbjct: 59  -------------------------GSSNKASPVQ--------LGKTQ-------TLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLRD 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|260773298|ref|ZP_05882214.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP
           69.14]
 gi|260612437|gb|EEX37640.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP
           69.14]
          Length = 314

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 68/333 (20%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L ++   +AD M +LM FF+++   +  D    K I       FG +N +      K
Sbjct: 10  PPGLPAYMGTFADLMALLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  +  ++  P R     ID+ + +   IT+ +++   G +++    QR +  +    + 
Sbjct: 70  GTSVIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGDSDRAGGNQRDDGQLTGGESP 129

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           + S       T DS+  +D  +  +  +++++E    L  + K    A+ R+        
Sbjct: 130 ETS-------TEDSQDNEDAEQEQEQSEALSEEMEIVLENIKK----ALDRE-------- 170

Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
                        I +G V  E     ILI I   R    F + S+   P+   ++++I 
Sbjct: 171 -------------IEQGAVEVENLGQQILIRI---RERGAFPEGSAFLQPQFRPLVRQIA 214

Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E++     ++ + GHTD       + R NW LS  RA S  Q           + +++GF
Sbjct: 215 ELVKDVPGIVQVTGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMERVTGF 264

Query: 316 AHHRLKIA------------SDPMNSANRRIDI 336
            H RL++             ++   S NRR++I
Sbjct: 265 DHRRLEVRGLADTAPVGPNDTEAQRSRNRRVEI 297


>gi|229195941|ref|ZP_04322694.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228587500|gb|EEK45565.1| OmpA/MotB domain protein [Bacillus cereus m1293]
          Length = 213

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ DL KK    L   V +N +
Sbjct: 30  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 85

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHT
Sbjct: 86  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 142

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N  
Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|42780820|ref|NP_978067.1| flagellar motor protein MotS [Bacillus cereus ATCC 10987]
 gi|42736740|gb|AAS40675.1| chemotaxis protein MotB, putative [Bacillus cereus ATCC 10987]
 gi|324325747|gb|ADY21007.1| flagellar motor protein MotS [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ DL KK    L   V +N +
Sbjct: 42  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 97

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHT
Sbjct: 98  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 154

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N  
Sbjct: 155 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|323706054|ref|ZP_08117624.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534668|gb|EGB24449.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 241

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 199 ISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I+S L  L+   N+   V ++    G +IS+ D   T +FD  S+   P+    L KIG 
Sbjct: 89  IASQLDKLIKQYNLQNMVTYKVDERGFVISLND---TLLFDTGSADVKPDQKETLIKIGN 145

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +L      I + G+TD  P  N     NW LS+ RA +  ++L+    +   +IS + G+
Sbjct: 146 ILKSMPNYIRVEGYTDNVPINNNQFHSNWELSVIRATNVVEILVNDVKMDPAKISAV-GY 204

Query: 316 AHHRLKIA--SDPMNSANRRIDILV 338
             +R  +   SD     NRR+DI++
Sbjct: 205 GEYRPIVPNDSDKNRQLNRRVDIVI 229


>gi|225164037|ref|ZP_03726322.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
 gi|224801343|gb|EEG19654.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
          Length = 253

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 30/116 (25%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD-EQNP 89
           G+WK+ YADF+T +MA F+V+W I+A D     +  +YF    K L+ A+ G+   E+  
Sbjct: 9   GAWKVAYADFVTAMMALFMVLW-ISAQDHQILISTARYFQAPTKPLLNAAAGVMPMEKFR 67

Query: 90  PER--------------SSQNKID--------------LSIDEHITKNSVDLKIGS 117
           PE               + Q  +D              L++DE  T N +D+++ S
Sbjct: 68  PETGKSSGEKDNPGTGLTDQKAVDLEYLNKLARELYRLLNLDESRTDNPIDIQVTS 123



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           + T  G+ + + D+   P+F    +        V+  +  ++      ++I GHT A   
Sbjct: 120 QVTSDGLRVILYDRNGRPLFVDRGTELTEWGRFVMDNLAWLIDRDHFYVTIEGHTRAGLT 179

Query: 278 ---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
              R  +   W LS DRA ++ + L +  VS   I ++ G+A  R  + +D  + +N+R+
Sbjct: 180 LDDRPSSYTLWELSADRANASRRALTEHVVSPALIERVVGYADTRPLLDTDATSESNQRV 239

Query: 335 DI 336
            +
Sbjct: 240 TL 241


>gi|90408165|ref|ZP_01216333.1| flagellar motor protein [Psychromonas sp. CNPT3]
 gi|90310695|gb|EAS38812.1| flagellar motor protein [Psychromonas sp. CNPT3]
          Length = 299

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 67/327 (20%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASK---- 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG   M   K    
Sbjct: 10  PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQSMLEVKDIPK 69

Query: 82  --GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              +  ++  P R     I++ + + I  T+  +D   G +                S +
Sbjct: 70  GTSVIAQEFTPGRPDPTPIEVIMQKTIEMTEAKLDFSEGDS----------------SRA 113

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              E  K  +  +  +G +  +S++  ++ ++                         LAK
Sbjct: 114 DGEEDSKEDIPEEGNQGNE--QSSEASEAQHQ-------------------------LAK 146

Query: 198 KISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++  L     D I +G +  E+    ++I I   R    F   S+   P    V++K+ 
Sbjct: 147 AVAQELQ----DEIQEGAIEIESLGQQLIIRI---REKGAFPSGSAFLQPRFRPVIRKVA 199

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           ++LA    VI+I GHTD     + + R NW LS  RA S    ++K     ++   ++G+
Sbjct: 200 KILADIPGVITISGHTDNEQVHSELYRSNWDLSAQRAVSVAHEMLKIKKIRNKHLVVAGY 259

Query: 316 AHHRL----KIASDPMNSANRRIDILV 338
           A+ +     KI S+     NRR++I++
Sbjct: 260 ANSKPLTDSKILSE--RKRNRRVEIMI 284


>gi|170736167|ref|YP_001777427.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169818355|gb|ACA92937.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIANAKYESNWELSSARAG 175

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           S  + L + GV+  R++ I       L    D  + A NRR+ I V
Sbjct: 176 SVVRYLSERGVAPHRLAAIGRADTQPLVAGGDAGSRARNRRVTIFV 221


>gi|78047517|ref|YP_363692.1| flagellar motor protein MotD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035947|emb|CAJ23638.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 324

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q   + FG                 
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
                                    GS+N+    Q        L  +Q       +L  D
Sbjct: 59  -------------------------GSSNKASPVQ--------LGKTQ-------TLGAD 78

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201
            ++   +     +  S    +   LP        P+S      + R +R  D + +++S 
Sbjct: 79  YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TL+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  
Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGGARGTLSTLASVLRD 192

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+   R 
Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251

Query: 321 KI--ASDPMNSANRRIDILV 338
           +   +++   +ANRR+ +++
Sbjct: 252 RADNSTEAGRNANRRVVLII 271


>gi|312884943|ref|ZP_07744633.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367420|gb|EFP94982.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 328

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 59/344 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73
           ++++ A    P  L  W   +AD M++LM FF+++   +  D    K I       FG  
Sbjct: 1   MEEEEACKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQ 60

Query: 74  -----KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQR 126
                K++   +  I  E   P R     ID+ + +   IT+ +V+   G +++    QR
Sbjct: 61  NRLEVKDIPKGTSVIAMEFR-PGRPEPTPIDVIMQQTIDITQQTVEFHEGESDRAGGMQR 119

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                         +  K +  + +E   +  +  D +    +++       S+E+    
Sbjct: 120 --------------DQGKETGGQSTETSTETSQEADSQSQEEQQQQQQ---ESQEQQQQS 162

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPL 245
           +  ++L+ +A+ I   L       I +G + E    G  I I I +R    F + S+   
Sbjct: 163 ESSEQLETVAENIKQALE----REIEQGAM-EVENLGQQIDIRIRERGA--FPEGSAFLQ 215

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304
           P+   ++++I E++     V+ + GHTD  P    + R NW LS  RA S  Q       
Sbjct: 216 PKFRPLVRQIAELVKDIPGVVRVSGHTDNQPIDSELYRSNWDLSAQRAVSVAQ------- 268

Query: 305 SEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336
               + K+ GF H RL++     ++P+         + NRR++I
Sbjct: 269 ---EMEKVRGFKHDRLRVRGMADTEPLGPNKTEAQRALNRRVEI 309


>gi|15639711|ref|NP_219161.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025949|ref|YP_001933721.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum
           SS14]
 gi|3024159|sp|O07887|MOTB_TREPA RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|2196896|gb|AAB61254.1| MotB [Treponema pallidum]
 gi|3323025|gb|AAC65689.1| flagellar motor rotation protein (motB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018524|gb|ACD71142.1| flagellar motor rotation protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060088|gb|ADD72823.1| chemotaxis protein MotB [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 238

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 25/185 (13%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           DL  ++N      LP L K + LA   KK +   A +I S    + +D            
Sbjct: 69  DLGNTVNT-----LPSLEKGQKLATALKKAVSLFAPEIKSNKIAVTSDE----------- 112

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF- 277
            G++IS+    ++  +  SS + + E+   L ++ + L   A +     I GHTD+    
Sbjct: 113 RGLVISLTS--DSFFYPGSSDLNVEESREALLRVAQFLSDHALAGRRFRIEGHTDSVEVP 170

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335
            + + DNW LS  RA      L   G  E+R S ++G+A  R K +++ P   A NRR+D
Sbjct: 171 EDGSTDNWELSTRRAVRVLHYLTDFGAQENRFS-LAGYADTRAKFSNESPEGRAYNRRVD 229

Query: 336 ILVED 340
           I++ D
Sbjct: 230 IVILD 234


>gi|149183513|ref|ZP_01861940.1| flagellar motor protein MotB [Bacillus sp. SG-1]
 gi|148848785|gb|EDL63008.1| flagellar motor protein MotB [Bacillus sp. SG-1]
          Length = 253

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 129/316 (40%), Gaps = 87/316 (27%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-P 90
           SW I YAD +T+L+A F+V++  ++ D    +A+ + FN     +     G+ +   P P
Sbjct: 17  SWLIPYADVLTLLLALFIVLFASSSVDAQKFQAMSKAFN----EIFVGGTGVMEYPTPVP 72

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           E  +                     G  N+ ++                    +NSLT D
Sbjct: 73  ETDA---------------------GDRNKNEE--------------------QNSLTVD 91

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                      +LE +  +E               M+  K+LQD        ++G +A N
Sbjct: 92  -----------ELEAAKKRE---------------MQELKKLQD-------RVNGYIAAN 118

Query: 211 IVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            ++     E T  G+L++I   R+  +F   S++   +   + +++  +L   T   + I
Sbjct: 119 ELQTQFATELTSEGLLLTI---RDNVLFQSGSAVVGAKDEGIAKELSGLLEMDTPRSVII 175

Query: 269 RGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GHTD  P      + NW LS+ RA +  ++++K+   + R     GF   +   ++D  
Sbjct: 176 SGHTDNVPISTANYESNWELSVMRAVNFMKIILKNQNLDPRWFSAKGFGEFKPMASNDTS 235

Query: 328 N--SANRRIDILVEDR 341
              + NRR+++L+  R
Sbjct: 236 EGRAKNRRVEVLILPR 251


>gi|255305748|ref|ZP_05349920.1| putative chemotaxis protein [Clostridium difficile ATCC 43255]
          Length = 246

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   +I    +   + +IG++L      + + GHTD    +N   
Sbjct: 116 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231

Query: 339 ED 340
            D
Sbjct: 232 VD 233



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN--- 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N   
Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGNSKI 69

Query: 89 -PPERSSQNKID 99
           P   +  N +D
Sbjct: 70 EPVVEAGSNDLD 81


>gi|197124706|ref|YP_002136657.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196174555|gb|ACG75528.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 206

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 14/130 (10%)

Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           + ET RT  G+L+   + +   +FD  SS   PE I  L+++G+VLA +  + I I G+T
Sbjct: 80  IAETKRTENGLLV---EMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYT 136

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           DA+  +++   N  LSL RA +  +VL+  GV E +I+ + G    R  +A +   S   
Sbjct: 137 DATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVR-PVADNGTASGRA 191

Query: 331 -NRRIDILVE 339
            NRR+++ ++
Sbjct: 192 QNRRVELHID 201


>gi|325523698|gb|EGD01964.1| OmpA family protein [Burkholderia sp. TJI49]
          Length = 226

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LPE+  VL +I   L AH+T  I + GHTD  P  N   + NW LS  RA 
Sbjct: 119 LFNVGDARLLPESAPVLDRIALALGAHATGDILVEGHTDRVPIANAKYESNWELSSARAG 178

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           S  + L + GV+  R++ + G A  +  +A D   S   NRR+ I V
Sbjct: 179 SVVRYLAERGVAPHRLAAV-GRADTQPLVAGDDAASRARNRRVTIFV 224


>gi|295696765|ref|YP_003590003.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912]
 gi|295412367|gb|ADG06859.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912]
          Length = 266

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            +   V+ E    G+LIS+   R+  +FD   +   PE   +L  +   LA     + I 
Sbjct: 120 GVAGQVVVEDKPKGLLISL---RDVILFDTGKADLKPEARKLLDGLLPFLAQVGNPLEIE 176

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PM 327
           GHTD  P        NW LS  RA +  + L   G+   R+S  +G+   R   ++D P 
Sbjct: 177 GHTDNRPIHTAQFPSNWELSTARALTVLEYLQAKGIDPKRLSA-TGYGEWRPVASNDNPE 235

Query: 328 NSA-NRRIDILVE 339
             A NRR++I +E
Sbjct: 236 GQALNRRVNITIE 248


>gi|255099860|ref|ZP_05328837.1| putative chemotaxis protein [Clostridium difficile QCD-63q42]
          Length = 246

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   +I    +   + +IG++L      + + GHTD    +N   
Sbjct: 116 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231

Query: 339 ED 340
            D
Sbjct: 232 VD 233



 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66


>gi|325923841|ref|ZP_08185450.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
 gi|325545675|gb|EGD16920.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
          Length = 329

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 54/311 (17%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L TA  G  +  +P +
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSNAASPVQ 68

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                 +    D      +  +K G+                 SN         S+    
Sbjct: 69  IGKTQTLGADYDRPSVIKAGVIKAGAP-------------MAASNGPTDPTLLPSMAAQM 115

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADN 210
                                    P+S      + R +R  D +A ++S TL+ L+   
Sbjct: 116 RM-----------------------PVSLRNQAQLARAQRQMDAVAAQLSKTLAPLIDKK 152

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           ++      T R   L   ++  +  +F   S+         L  +  VL  +   + + G
Sbjct: 153 LI------TIRRNDLWIEVEINSDILFGTGSAALAGTARDTLSTLASVLRDAPNGVRVEG 206

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327
           +TD  P        NW LS  RA S   +    GV+  R++ + G+   R +   +++  
Sbjct: 207 YTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRARADNSTEAG 265

Query: 328 NSANRRIDILV 338
            +ANRR+ +++
Sbjct: 266 RNANRRVVLII 276


>gi|303249271|ref|ZP_07335504.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489310|gb|EFL49266.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 264

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 16/118 (13%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KN +  + +II ++       ++ GSWK+ YADF+T LMAFFL++W++ +    TK+ + 
Sbjct: 3   KNSDKGKTVIIYRESEGGHGGHHGGSWKVAYADFVTALMAFFLLLWLVVSLKPKTKQELS 62

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQN--KIDLSIDEHITKNSVDLKIGSTNQKK 122
             F               D+  P +   QN  K+   I     K S + K+   N+ K
Sbjct: 63  LVFQ--------------DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQENKLK 106


>gi|126698325|ref|YP_001087222.1| putative chemotaxis protein [Clostridium difficile 630]
 gi|115249762|emb|CAJ67579.1| putative OmpA/MotB proton channel [Clostridium difficile]
          Length = 248

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   +I    +   + +IG++L      + + GHTD    +N   
Sbjct: 118 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 174

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233

Query: 339 ED 340
            D
Sbjct: 234 VD 235



 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68


>gi|296134255|ref|YP_003641502.1| OmpA/MotB domain protein [Thermincola sp. JR]
 gi|296032833|gb|ADG83601.1| OmpA/MotB domain protein [Thermincola potens JR]
          Length = 296

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 12/180 (6%)

Query: 167 INKEENYFLP----PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           + +   YF+     PL   +  A  +KK ++++ K      + +   N+   V+      
Sbjct: 58  VGQNSGYFIGEAPGPLVIPEQSAGAQKKEMEEMKKAKEQLDAYIKGQNLGGKVVVAYEER 117

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   + T  F   S+   P+    L KIG+VL +    + I GHT   P R    
Sbjct: 118 GLVISL---KETMFFAIGSAAINPQAQETLIKIGQVLKNMPNNLRIEGHTCNLPIRTANF 174

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
             NW LS  RA +  + L+ + G    R+S  +G+  +R  +   S+   + NRR+DI+V
Sbjct: 175 PSNWELSTARATNVVKFLIDRVGFDPKRLSA-TGYGEYRPLVPNTSEANRAMNRRVDIVV 233


>gi|220919426|ref|YP_002494730.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957280|gb|ACL67664.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 206

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 16/131 (12%)

Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           + ET RT  G+L+   + +   +FD  SS   PE I  L+++G+VLA +  + I I G+T
Sbjct: 80  IAETKRTENGLLV---EMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYT 136

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           DA+  +++   N  LSL RA +  +VL+  GV E    +I+      ++  +D   SA  
Sbjct: 137 DATGSKSM---NEELSLRRADAVKRVLVGRGVQE---KQITALGMGPVRPVADNGTSAGR 190

Query: 331 --NRRIDILVE 339
             NRR+++ ++
Sbjct: 191 AQNRRVELHID 201


>gi|237653594|ref|YP_002889908.1| flagellar motor protein MotD [Thauera sp. MZ1T]
 gi|237624841|gb|ACR01531.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 279

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 177 PLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           P + + ++  +R++   R++++A +I   LS L     VK      T     +S+ +   
Sbjct: 87  PPAVDPVVEQRRQQAAQRMRNVADEIRRVLSPLTGSGQVK-----VTEGAFGVSV-EINA 140

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
           + +F    +      +  LQ +  VLA +   I++ GHTD  P        NW LS  RA
Sbjct: 141 SLLFAPGEAALGSNAVSALQAVARVLAPAEFPITVEGHTDNVPISTFRFPSNWELSAVRA 200

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
            +  ++ + +GV+  R++  +G+A  R     A +     NRR+ IL+E R
Sbjct: 201 STVARLFIDNGVTPARLTA-AGYADQRPVADNADEEGRGRNRRVTILIESR 250



 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 33/49 (67%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          ++++  +D+  +N   W + YADF+T+L AFF+VM+ +++ ++   + +
Sbjct: 1  MRRRRKLDEEHDNHERWLVSYADFITLLFAFFVVMYSLSSVNEGKYRVL 49


>gi|107026971|ref|YP_624482.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116691833|ref|YP_837366.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105896345|gb|ABF79509.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116649833|gb|ABK10473.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 223

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP +  VL +I + L+ H+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 116 LFNVGDARLLPHSSPVLNQIAQALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 175

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           S  + L + GV+  R++ I G A  +  +A D   S   NRR+ I V
Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAGSRARNRRVTIFV 221


>gi|169825896|ref|YP_001696054.1| chemotaxis protein motB [Lysinibacillus sphaericus C3-41]
 gi|168990384|gb|ACA37924.1| Chemotaxis protein motB (Motility protein B) [Lysinibacillus
           sphaericus C3-41]
          Length = 235

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 13/157 (8%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  Q+LA+ I  ++   +A N ++G    E T  G+L++I   R++ +FD   +   PE 
Sbjct: 71  KDQQELAE-IKDSVDNFIAVNEMEGQFATEMTDEGLLVTI---RDSILFDPGQATIKPEY 126

Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV--- 304
           I + +++ +VL ++    I I GHTD  P       N  LSL RA + Y VL+ S     
Sbjct: 127 IPIAKELADVLVSNPPRNIVITGHTDNVPAGPNFSSNLELSLMRASNFYMVLLDSNSQLK 186

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           SE+  +K  G+  +R    +D     + NRR+++L++
Sbjct: 187 SENFSAK--GYGENRAIAPNDTAEGRAKNRRVEVLIQ 221


>gi|37679056|ref|NP_933665.1| flagellar motor protein MotB [Vibrio vulnificus YJ016]
 gi|326423687|ref|NP_759314.2| flagellar motor rotation protein motB [Vibrio vulnificus CMCP6]
 gi|37197798|dbj|BAC93636.1| flagellar motor protein [Vibrio vulnificus YJ016]
 gi|319999044|gb|AAO08841.2| Flagellar motor rotation protein motB [Vibrio vulnificus CMCP6]
          Length = 318

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 136/335 (40%), Gaps = 67/335 (20%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA-- 79
           D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +    
Sbjct: 9   DCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKD 68

Query: 80  -SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             KG  I  ++  P R     ID+ + +   IT+ +++   G +++    QR +     +
Sbjct: 69  IPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDQGK---M 125

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           +  Q  E    +     ++     +     ++++KE    +  + K    A++R+     
Sbjct: 126 TGGQSPETSTQTNQNTEQQ-----QQQQQSEAMSKEMETLMESIKK----ALERE----- 171

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
                           I +G + E    G  I +I  R    F + S+   P+   ++++
Sbjct: 172 ----------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVRQ 213

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I E++     ++ I GHTD       + R NW LS  RA S  Q           + K+ 
Sbjct: 214 IAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVR 263

Query: 314 GFAHHRLKIA----SDPM--------NSANRRIDI 336
           GF+H RL++     +DP+         + NRR++I
Sbjct: 264 GFSHQRLRVRGMADTDPLVDNDTEENRARNRRVEI 298


>gi|304405743|ref|ZP_07387401.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304344986|gb|EFM10822.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 278

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNI- 280
           +LI+I D     ++   SS   PE+  + Q I ++L      E+I + GHTD  P  N  
Sbjct: 147 LLITISD---NALYASGSSAVKPESRKLGQAIAKMLKQYPGYEII-VAGHTDNQPISNSD 202

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336
            RDNW LS DRA +  Q+L+ S   + ++   +G+   R     A++   S NRR+++
Sbjct: 203 FRDNWDLSSDRALNFMQILLASAQLDPKLISSTGYGEFRPLTSNATEAGRSKNRRVEV 260



 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          SW I YAD MT+L+A F+V++ +++ D      + + FN
Sbjct: 17 SWLIPYADLMTLLLALFIVLFSMSSVDAKRFDEMSRAFN 55


>gi|116620375|ref|YP_822531.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223537|gb|ABJ82246.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 23/135 (17%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------------NPF--GKNL 76
           G+WK+ YADF+T LMA F+V+W++N++    K +I  YF             P   G+ L
Sbjct: 16  GAWKVAYADFVTALMALFIVLWLMNSS-TKVKSSISGYFRDPRGFTRTLGAGPANSGEGL 74

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN--IFYL 134
              + G+ D +   E +      L      +K   ++K   T +  +   LEN+  +F++
Sbjct: 75  SLRTDGLLDIRRKLEEA------LRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFV 128

Query: 135 SNSQQSEHCKNSLTR 149
           S S         L R
Sbjct: 129 SGSPAPTRAGEELLR 143



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           R   L D+ +K+   L  +   + ++  V F  T  G+ I +++      F   S  P  
Sbjct: 77  RTDGLLDIRRKLEEALRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFVSGSPAPTR 136

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKS 302
               +L+ +   +      + I GHTDA PFRN        NW L+ DRA +A ++L   
Sbjct: 137 AGEELLRVLAREIGRLPNSLVIEGHTDAKPFRNARPAEGYSNWELAADRANAARRLLHLF 196

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           GV  +++ ++ GFA  +     D  ++ NRR+ ++V+
Sbjct: 197 GVRPEQVVEVRGFADQKPFNERDRFDARNRRVSVVVK 233


>gi|83648502|ref|YP_436937.1| flagellar motor protein MotB [Hahella chejuensis KCTC 2396]
 gi|83636545|gb|ABC32512.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 326

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A  ++S L   V +N V+    ET    I+I + ++ +   F   S+   PE   V+ K+
Sbjct: 147 AITLASALESEVRNNQVE---VETRGRKIVIRVQEKGS---FSSGSADLNPEFYPVIDKL 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            E+L      IS+ GH+D+ P R    R NW LS  RA      L +SG  E     I+G
Sbjct: 201 VELLKSMEGSISVEGHSDSIPIRTARFRSNWDLSAARALEVAHALFESGELEPSRFSIAG 260

Query: 315 FAHHRLKIASDPMN--SANRRIDILVE 339
           +A  +    +D     + NRR++I+++
Sbjct: 261 YADTKPLAPNDSAENRARNRRVEIILQ 287


>gi|325294743|ref|YP_004281257.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065191|gb|ADY73198.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 233

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294
           +F   S  P  ETI ++ ++ + L      I+I GHTD  P R+ I   NW LS  RA S
Sbjct: 125 LFPPGSEKPYKETIPLIMEMCKKLKELELPITIEGHTDNVPIRSKIFPSNWELSAARAVS 184

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
             ++ ++ G    ++S      +  +   + P   A NRRI+I++
Sbjct: 185 VLRLFIQCGYDPRKLSAAGCGPYRPIAPNTTPEGRAKNRRIEIVI 229


>gi|213583424|ref|ZP_03365250.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 142

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L+ I  VL      IS+ GHTD  P+ N  +   NW LS DRA ++ + L+  G+   +
Sbjct: 9   ILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGK 68

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 69  VLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 103


>gi|254974362|ref|ZP_05270834.1| putative chemotaxis protein [Clostridium difficile QCD-66c26]
 gi|255091756|ref|ZP_05321234.1| putative chemotaxis protein [Clostridium difficile CIP 107932]
 gi|255313486|ref|ZP_05355069.1| putative chemotaxis protein [Clostridium difficile QCD-76w55]
 gi|255516174|ref|ZP_05383850.1| putative chemotaxis protein [Clostridium difficile QCD-97b34]
 gi|255649270|ref|ZP_05396172.1| putative chemotaxis protein [Clostridium difficile QCD-37x79]
 gi|306519371|ref|ZP_07405718.1| putative chemotaxis protein [Clostridium difficile QCD-32g58]
          Length = 246

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   ++    +   + +IG++L      + + GHTD    +N   
Sbjct: 116 GLVISL---KDTILFDTGKAVVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231

Query: 339 ED 340
            D
Sbjct: 232 VD 233



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66


>gi|260682442|ref|YP_003213727.1| putative chemotaxis protein [Clostridium difficile CD196]
 gi|260686041|ref|YP_003217174.1| putative chemotaxis protein [Clostridium difficile R20291]
 gi|260208605|emb|CBA61322.1| putative chemotaxis protein [Clostridium difficile CD196]
 gi|260212057|emb|CBE02637.1| putative chemotaxis protein [Clostridium difficile R20291]
          Length = 248

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS+   ++T +FD   ++    +   + +IG++L      + + GHTD    +N   
Sbjct: 118 GLVISL---KDTILFDTGKAVVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 174

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           + NW LS+ RA +  Q+L+  +G++ D++S + G+   R   + +S+   S NRR+DI++
Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233

Query: 339 ED 340
            D
Sbjct: 234 VD 235



 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N  FG      S G+ +  N
Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68


>gi|311695186|gb|ADP98059.1| flagellar motor protein MotD [marine bacterium HP15]
          Length = 260

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 89/310 (28%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    D  +N   W I YADF+T+L AFF+VM+ +++ ++   K + +         
Sbjct: 1   MRRRRQPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLT------ 54

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G+F   N P+RS Q                 ++IG   Q+               
Sbjct: 55  -----GVF---NAPQRSFQ----------------PIEIGDQPQR--------------- 75

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKR 191
                                        S+N      +PP   E     ++ A  R + 
Sbjct: 76  -----------------------------SLNAPAENVIPPAVTEAPRNPEMDAQARTEA 106

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A ++S     L+   +V     ET+   + +++    N+ +F    + P  +   V
Sbjct: 107 LRAMADQLSMEFDELINQGVVS---LETSDQWLELNL---PNSLLFGSGDAEPHYDAFEV 160

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++KI  VL +    + + G TD  P  + +R   NW LS  RA +  ++L+  G+  +R+
Sbjct: 161 VEKIATVLNNRDNAVKVEGFTDNQPI-STSRFPSNWELSAARAAAMVRMLVMEGIEPERL 219

Query: 310 SKISGFAHHR 319
           + + G+  ++
Sbjct: 220 AAV-GYGQYQ 228


>gi|86751586|ref|YP_488082.1| hypothetical protein RPB_4488 [Rhodopseudomonas palustris HaA2]
 gi|86574614|gb|ABD09171.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287
            FD   ++ LPE    L K+   L    +        V+ + GHTD  P   + + NW L
Sbjct: 227 FFDTGQALLLPEGRAELDKLAAALTELDKKIPSEIPWVLRVDGHTDRRPITGVFKSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341
           S  RA S  Q L+  GV   R+   +GFA  + L  A +D     NRRI++ + +R
Sbjct: 287 SSARAISVVQYLVSLGVPAQRLVA-AGFAEFQPLDTANTDEAYRRNRRIELKLTER 341


>gi|91978797|ref|YP_571456.1| hypothetical protein RPD_4338 [Rhodopseudomonas palustris BisB5]
 gi|91685253|gb|ABE41555.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287
            FD   ++ LPE    L K+   L    +        V+ + GHTD  P     + NW L
Sbjct: 227 FFDTGQALLLPEGRAELDKLAPALTELDKKIPPEIAWVLRVDGHTDRRPITGAFKSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341
           S  RA S  Q L+  GV   R+   +GFA  + L IA +D     NRRI++ + +R
Sbjct: 287 SSARAISVVQYLVSLGVPAQRLVA-AGFAEFQPLDIANTDDAYKRNRRIELKLTER 341


>gi|78358626|ref|YP_390075.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221031|gb|ABB40380.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 242

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  + +VL +S+  ++I GHTD SP   +  DN+ LS  RA +     ++SG+  +R S
Sbjct: 146 LLAPLADVLEYSSADVTISGHTDDSPASGV--DNYDLSGRRAMAVLDFFLESGLGAERFS 203

Query: 311 KISGFAHHR-LKIASDPMNSA-NRRIDILVEDRQ 342
            +SG+   + L+  + P   A NRR++IL++  Q
Sbjct: 204 -VSGYGPDKPLESNATPQGRAQNRRVEILLKTTQ 236


>gi|302342669|ref|YP_003807198.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639282|gb|ADK84604.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 244

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 16/162 (9%)

Query: 197 KKIS-STLSGLVADNIVKGVLFETTRTGI--LISIIDQ--------RNTPMFDKSSSIPL 245
           K++S S L+G   D I++ +   T +  +  ++ +IDQ        +   +F+  SS   
Sbjct: 83  KRMSLSELTGRQTDPIMQDIREVTDQKNLDDVVEVIDQGDKVILRVKGQLLFNTGSSDIN 142

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
           P+ + VL+ I +V+  +    + ++GHTD+ P  ++    NW LS  RA +  + L++ G
Sbjct: 143 PQALGVLKAIADVVDRNPGWRLDVKGHTDSRPISSVKFASNWELSSLRATAVLRYLIEQG 202

Query: 304 VSEDRISKISGFAH-HRLKIASDPMNSA-NRRIDILVEDRQG 343
           VS  R++  +G+A   RL   S   N A NRR++ ++E ++G
Sbjct: 203 VSPSRLTA-TGYADTQRLVPDSSEENMARNRRVEFVLEKQKG 243


>gi|222053743|ref|YP_002536105.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563032|gb|ACM19004.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 258

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E  R G+++S+   +    FD  S+I       +L  + E L + T  + + GHTD 
Sbjct: 125 VSVEINRRGLVVSL---KEAGFFDSGSAIVQQSAYSLLAHVAESLVNYTNPVRVEGHTDN 181

Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSA 330
            P  +     NW LS  RA +  Q L+K    E      +GF  +R  +A +      S 
Sbjct: 182 VPINSRTFPSNWELSTARATNLVQYLIKYYEFEPEKISATGFGEYR-PVADNTTVDGRSK 240

Query: 331 NRRIDIL---VEDRQG 343
           NRR+DI+   VE  +G
Sbjct: 241 NRRVDIVLLSVESERG 256


>gi|229029408|ref|ZP_04185491.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228731867|gb|EEL82766.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
          Length = 227

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D+E+   K     +P +S EK    M  KKR+ DL KK    L   V  N +
Sbjct: 44  SKMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMISKKRMDDLYKK----LKAYVDSNGI 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N  
Sbjct: 157 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 216

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 217 KNRRVVIYIKE 227


>gi|269962340|ref|ZP_06176690.1| flagellar motor protein [Vibrio harveyi 1DA3]
 gi|269832836|gb|EEZ86945.1| flagellar motor protein [Vibrio harveyi 1DA3]
          Length = 314

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F + S+   P+   ++++I E++     ++ + GHTD  P    + R NW 
Sbjct: 186 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWD 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334
           LS  RA S  Q           + K+ GF+H RL++             SD   + NRR+
Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRV 295

Query: 335 DI 336
           +I
Sbjct: 296 EI 297


>gi|253996642|ref|YP_003048706.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983321|gb|ACT48179.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 271

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 21/221 (9%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
           +Y++L N+I    +   S     + T   EKG      T+   SI K       PL    
Sbjct: 47  KYKQLTNSIGTAFSGNGSSGVNQTST---EKGLGAKGITEANSSIVK-------PLPLSH 96

Query: 183 ILAMKRKKRLQDLAK---KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           + + K ++    +AK   ++S+ L+ ++ +  ++  + +T+R GI I I D     +F  
Sbjct: 97  LYSEKLRRERDSMAKTGVEVSNKLAPMINEGKIQ--VIQTSR-GIRIDIQDNL---LFGA 150

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298
            S+   P    ++ +I  ++  +   I + GHTD +P  N     NW LS  RA S  ++
Sbjct: 151 GSADLSPTANAIISEIVPLIKDNQRKIQVEGHTDNTPIHNATFFSNWELSAVRASSVVRL 210

Query: 299 LMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           L   G+SE R+S    G +    +  S+   + NRR+ I++
Sbjct: 211 LSALGISEQRLSATGLGASQPISENESEAGRAKNRRVSIII 251



 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          +I+K+V  D    N   W + YADF+T+L AFF+VM+ I++ +
Sbjct: 4  LIRKRVEEDQ--ENHERWLVSYADFITLLFAFFVVMYSISSVE 44


>gi|332298234|ref|YP_004440156.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332181337|gb|AEE17025.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 236

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 31/189 (16%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            DL  +IN      LP L K K L +  K+ +   A  + S    L +D           
Sbjct: 66  ADLGNTINS-----LPSLEKGKSLGLSVKRAVSLFAPDVKSNKITLSSD----------- 109

Query: 221 RTGILISII-DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASP 276
             G++I++  D    P    S+++ + ET   + ++ + L+    S     I GHTD +P
Sbjct: 110 ERGLVITLASDSFFAP---GSAALNIEETRATVLRLAQFLSSKELSGRRFRIEGHTDGTP 166

Query: 277 FRNIARD---NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
               ++D   NW LS  RA +    L   GV+E + S ++G+A  R K ++D     + N
Sbjct: 167 V--ASKDFPSNWELSAARAVNVLHYLSDFGVNEAQFS-VAGYADTRPKFSNDTAEGRAYN 223

Query: 332 RRIDILVED 340
           RR+DI++ D
Sbjct: 224 RRVDIIILD 232


>gi|116332026|ref|YP_801744.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125715|gb|ABJ76986.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 224

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           L N ++ +SNS+     K+      E  + L +  +L +S+N+     L  + +E  L +
Sbjct: 11  LLNLVYCVSNSKYESLLKSYEESKLENQRILEEKVNLSRSLNE-----LKRIQEESELRI 65

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +  KRL  +A   S   +G +   I+ G +     + IL  +     +     +    + 
Sbjct: 66  QEYKRL--IATFRSLIDAGKLKIKIIDGRMVVVLSSDILFPV----GSAFLSSAGIASIR 119

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E   +L  +G       +   I GHTD +P       NW L+  RA +    ++K+G+ E
Sbjct: 120 EVTTLLASLG------GKRFQIEGHTDDTPTGIKGYTNWELASSRALNVLHTMIKAGMPE 173

Query: 307 DRISKISGFAHHRLKIASDPMN-SANRRIDILV 338
           +RIS  S  A       + P N SANRRI+I++
Sbjct: 174 ERISAASMGASRPALPNTSPENRSANRRIEIVI 206


>gi|315635427|ref|ZP_07890693.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315480185|gb|EFU70852.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 316

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++ SSIP  ++   +++I ++L  +    + + GHTD+   R  A  N ++S DRA S 
Sbjct: 214 FERKSSIPTEQSQNTIKEIAKILNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSV 270

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338
             +L+ SGV+E RI  I G+      IA D  N     NRR++ ++
Sbjct: 271 KNILVNSGVNETRIKAI-GYGEE-FPIAKDDENGLSEINRRVEFII 314


>gi|258624381|ref|ZP_05719329.1| flagellar motor protein [Vibrio mimicus VM603]
 gi|258583343|gb|EEW08144.1| flagellar motor protein [Vibrio mimicus VM603]
          Length = 319

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 79/340 (23%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 11  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  I  ++  P R     ID+ + +   IT+ ++D + G +++    Q            
Sbjct: 71  GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQ------------ 118

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
                      RDS K   L      E S    +N               + +  Q  AK
Sbjct: 119 -----------RDSGK---LTGGQSAESSTQDNQNT--------------QSEMQQQQAK 150

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVV 251
            +S  +   VA++I K +  E  +  I +  + Q      R    F + S+   P+   +
Sbjct: 151 AMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPL 209

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +++I +++      + + GHTD       + R NW LS  RA S  Q           + 
Sbjct: 210 VRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EME 259

Query: 311 KISGFAHHRLKIA----SDPMN--------SANRRIDILV 338
           K+ GF H RL++     + P+         + NRR++I +
Sbjct: 260 KVKGFDHQRLQVRGMADTQPLGPNDTEAQRALNRRVEISI 299


>gi|254251112|ref|ZP_04944430.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158]
 gi|124893721|gb|EAY67601.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158]
          Length = 431

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMF 237
           + +IL + R+ RL    +++   LS L+ D I +GVL   E  R     SI+  +   MF
Sbjct: 274 EARILEIGRE-RLASAPQRLR--LSQLLRDEIARGVLTVDEDERR----SIVVFKGDSMF 326

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296
               S  LP    +L K+   +A     + + GHTD  P R+ A  +N  LS  RA    
Sbjct: 327 ASGQSTVLPGIEPILDKVAREVARVGGTVLVTGHTDNQPIRSAAFANNLALSEKRAAYVA 386

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           Q+L + G   +RI  +  G        A+    + NRR++I+V
Sbjct: 387 QILQRDGTPAERIRAVGKGDTQPVGDNATAAGRALNRRVEIMV 429


>gi|119900180|ref|YP_935393.1| hypothetical protein azo3891 [Azoarcus sp. BH72]
 gi|119672593|emb|CAL96507.1| putative outer membrane protein [Azoarcus sp. BH72]
          Length = 434

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+   L G +A  I +G++  T R     S++  +   +F+ +S+   P  + ++ +IGE
Sbjct: 289 KVPDRLQGFLAPEIREGLV--TVRDLPDRSVVQIQGDGLFEPASATLAPRVLPLMARIGE 346

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +A     + +RGH+D  P R+ AR   NW LS  RA S   VL    +   RI +  G 
Sbjct: 347 AVARVKGSVLVRGHSDDRPIRS-ARFPSNWHLSQARADSVAAVLAPQ-LGGARI-ETEGR 403

Query: 316 AHHRLKIASD-PMNSA-NRRIDILV 338
           A      ++D P   A NRR++I+V
Sbjct: 404 AESEPVASNDTPEGRARNRRVEIIV 428


>gi|289672566|ref|ZP_06493456.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
          FF5]
          Length = 48

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57
          EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+I+++
Sbjct: 2  ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLISSS 48


>gi|326794296|ref|YP_004312116.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545060|gb|ADZ90280.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 334

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 47/317 (14%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
            L ++   +AD M++LM FF+++      D      + ++     K L  + +  F    
Sbjct: 15  GLPAYMGTFADLMSLLMCFFVLLLSFAEMD------VLKF-----KQLAGSMREAF---- 59

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                        + + I   S+ +      Q+    R E         +  +  +N+L 
Sbjct: 60  ------------GVQKQIEAQSIPMGTSIIAQEFSPGRPEPTPINEVRQKADDRPENTL- 106

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSK--EKILA-MKRKKRLQDLAKKISSTLSG 205
                 + LCK    E  +N++E    P  S   +K  A ++R+K++Q   ++ +  +S 
Sbjct: 107 ------EVLCKPDTAE--LNEQEGAGQPSPSTFVDKSKADLEREKQIQQ-TEEDAQQISS 157

Query: 206 LVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           ++ + I KG V  ET    I I + D+ +   F+  S+    + I V+  + EVL     
Sbjct: 158 VMKEEISKGTVEVETQEQTITIRLKDKGS---FESGSAELNFDFIPVIDMVREVLIGVKG 214

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
            IS+ GHTD  P  +   + NW+LS  R+ +  + L  +G  +     ++GFA  R  + 
Sbjct: 215 NISVEGHTDNIPIESRRFQSNWQLSSARSIAVAEELFATGALDQNRFSVTGFADTRPLVP 274

Query: 324 SDPM--NSANRRIDILV 338
           +D     + NRR++I++
Sbjct: 275 NDTSANRATNRRVEIVI 291


>gi|148266090|ref|YP_001232796.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399590|gb|ABQ28223.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 258

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E TR G+++S+   +    FD  S+     +  +L  + E +++ T  I + GHTD 
Sbjct: 125 VSVEITRRGLVVSL---KEVGFFDSGSATVQQNSYGLLAHVAESVSNYTNPIRVEGHTDN 181

Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
            P   +    NW LS  RA +  Q L++      D+IS  +GF  HR  IA +       
Sbjct: 182 VPISSHTFPSNWELSTARATNLVQYLIRYYEFQPDKISA-TGFGEHR-PIADNSTAEGRG 239

Query: 331 -NRRIDILV 338
            NRR+DI++
Sbjct: 240 KNRRVDIVL 248



 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATD-DDTKKAIEQYFNPFG 73
          NL  W + YADF+T+L A F+ ++ ++ TD    ++ +E     FG
Sbjct: 12 NLERWLVSYADFITLLFAVFVTLYAMSQTDKKKAEEVVESLRESFG 57


>gi|330904017|gb|EGH34589.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 88

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      +SI GHTDA
Sbjct: 15  ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 74

Query: 275 SPF 277
           +PF
Sbjct: 75  TPF 77


>gi|188586029|ref|YP_001917574.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350716|gb|ACB84986.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 269

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P   E+ +  + ++ ++D+  ++   +      ++ + V+ ET   GI+I   D+    +
Sbjct: 84  PEPSERQVPSEEEQMMEDIYDQLEDYIEDA---DLAEVVMLETEERGIVIRFQDKI---L 137

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           FD   +    E++ +L  I E+L      I + G TD  P        NW LS  RA + 
Sbjct: 138 FDSGRAELRSESLEILGDIAEILEEIPNEIKVEGFTDDVPIDTPEFPSNWELSAARATTV 197

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338
            + L + G  +    + +G+  +R  + +D P N   NRR+DI V
Sbjct: 198 LRYLSEEGGLDPGRLQATGYGEYRPMVPNDSPENRQLNRRVDITV 242


>gi|258621630|ref|ZP_05716662.1| flagellar motor protein [Vibrio mimicus VM573]
 gi|262165143|ref|ZP_06032880.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223]
 gi|258586102|gb|EEW10819.1| flagellar motor protein [Vibrio mimicus VM573]
 gi|262024859|gb|EEY43527.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223]
          Length = 319

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 79/340 (23%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 11  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  I  ++  P R     ID+ + +   IT+ ++D + G +++    Q            
Sbjct: 71  GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQ------------ 118

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
                      RDS K   L      E S    +N               + +  Q  AK
Sbjct: 119 -----------RDSGK---LTGGQSAESSTQDNQNT--------------QSEMQQQQAK 150

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVV 251
            +S  +   VA++I K +  E  +  I +  + Q      R    F + S+   P+   +
Sbjct: 151 AMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPL 209

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +++I +++      + + GHTD       + R NW LS  RA S  Q           + 
Sbjct: 210 VRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EME 259

Query: 311 KISGFAHHRLKIA------------SDPMNSANRRIDILV 338
           K+ GF H RL++             ++   + NRR++I +
Sbjct: 260 KVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISI 299


>gi|332534966|ref|ZP_08410784.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035584|gb|EGI72076.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 306

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 130/316 (41%), Gaps = 37/316 (11%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P  L +W   +AD M++LM FF+++   +  D      + ++     K +  + K  F  
Sbjct: 10  PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           QN  E     K    I    T    +     T Q++  +  +  + + +  + S   +  
Sbjct: 59  QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
              D   G+   +ST  E+             S E+  +   +++  +L KKI+  L   
Sbjct: 119 QRGDKRGGE--SRSTSQEQ-------------SSEQATSAADQEQTNELVKKIAQQLEKQ 163

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           + D  ++    E+    I+I I   R    F   S+   P+   ++Q IG +L      I
Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGVLLKDVPGEI 217

Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           ++ GHTD     N +  +NW LS  RA + A ++    G  ++R+  + G A  R  + +
Sbjct: 218 TVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQTVQGFDKNRM-MVVGRADTRPLVPN 276

Query: 325 DPMNS--ANRRIDILV 338
           D       NRR++I +
Sbjct: 277 DSNEDRRRNRRVEISI 292


>gi|229160692|ref|ZP_04288684.1| OmpA/MotB domain protein [Bacillus cereus R309803]
 gi|228622707|gb|EEK79541.1| OmpA/MotB domain protein [Bacillus cereus R309803]
          Length = 226

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ DL KK    L   V +N +
Sbjct: 43  SKMLEKFSDAEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 98

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ I I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 99  SQVNVYREDTGVSIVIVDNL---IFDTGDASVKPEAKEIISQLVGFFQSVPNPIVVEGHT 155

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 156 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYHVDDKRLAAVGYADTKPVVPNDSPQNWE 215

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 216 KNRRVVIYIKE 226


>gi|157736296|ref|YP_001488979.1| hypothetical protein Abu_0025 [Arcobacter butzleri RM4018]
 gi|157698150|gb|ABV66310.1| hypothetical protein, OmpA domain [Arcobacter butzleri RM4018]
          Length = 316

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++ SSIP  ++   +++I ++L  +    + + GHTD+   R  A  N ++S DRA S 
Sbjct: 214 FERKSSIPTEQSQNTIKEIAKILNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSV 270

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338
             +L+ SGV+E RI  I G+      IA D  N     NRR++ ++
Sbjct: 271 KNILVNSGVNETRIKAI-GYGEE-FPIAKDDENGLSEINRRVEFII 314


>gi|319653376|ref|ZP_08007476.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2]
 gi|317394860|gb|EFV75598.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2]
          Length = 265

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 10/178 (5%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           EE   +  L KEK+     ++ L +L +++++ +      N+   +    T  G+L+SI 
Sbjct: 91  EEMAAMDELEKEKLKQAADQEELAELQQRVNAFIEN---QNLADKLETSLTTEGLLVSI- 146

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA-RDNWRL 287
             R+  +F   S+    + + +  +I E+L       I I GHTD  P RN +   NW L
Sbjct: 147 --RDNVLFGSGSAEVREQDLNMASEIAELLIMDPPRNIIISGHTDNVPIRNSSFESNWEL 204

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           S+ RA +  ++++K+   + +     GF   +    ++     + NRR++IL+  R G
Sbjct: 205 SVMRAVNFMKIILKNDQLDPKWFSAKGFGEFQPVAGNNTKEGRAKNRRVEILILPRTG 262


>gi|170727809|ref|YP_001761835.1| flagellar motor protein MotB [Shewanella woodyi ATCC 51908]
 gi|169813156|gb|ACA87740.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 322

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 56/337 (16%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KN 75
           D  P     W   +AD M++LM FF+++   +  D    K I       FG       K+
Sbjct: 7   DCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNKVEVKD 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +   +  I  E  P       + + +  E IT+ + ++    T    +YQ  E++    S
Sbjct: 67  IPKGTSVIALEFRP------GRPEPTPIETITQQTSEI----TEPVIEYQAGEDDSSGGS 116

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ +      +  +++      S+D E     +E       ++E I          + 
Sbjct: 117 QKQQGQQRGGESSATAQEQSVAQSSSDSESEAKAKEESDAQAAAQENI---------NEQ 167

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V++++
Sbjct: 168 VKKMAQELNTEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVVRRV 221

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           GE+L     ++++ GHTD     N +   NW LS  RA +    L+          K+ G
Sbjct: 222 GELLKDVPGIVTVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELI----------KVKG 271

Query: 315 FAHHRLKIA----SDPM--------NSANRRIDILVE 339
           F   R+K+     SDP+         + NRR++I +E
Sbjct: 272 FDPQRMKVVGMANSDPLVANDTSSHRARNRRVEIAIE 308


>gi|254228602|ref|ZP_04922026.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262395023|ref|YP_003286877.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|151938781|gb|EDN57615.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262338617|gb|ACY52412.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 315

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F + S+   P+   ++++I E++     ++ + GHTD  P    + R NW 
Sbjct: 187 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWD 246

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334
           LS  RA S  Q           + K+ GF+H RL++             SD   + NRR+
Sbjct: 247 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLLPNDSDENRALNRRV 296

Query: 335 DI 336
           +I
Sbjct: 297 EI 298


>gi|152976910|ref|YP_001376427.1| flagellar motor protein MotB [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025662|gb|ABS23432.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 265

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G++I+I++     +FD   +   PE++ +  ++  +L + +   I++ GHTD  P  
Sbjct: 138 TEQGLMITILE---NVLFDSGKADVKPESLNIANEMSHLLLSAAPREITVSGHTDNVPIT 194

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N     NW LS  RA +  QVL+++   +      +G+  +R   ++D     + NRR++
Sbjct: 195 NSQFSSNWELSTQRAVNFMQVLLQNKQLDPAKFSATGYGEYRPATSNDTSEGKAKNRRVE 254

Query: 336 ILVEDRQG 343
           + +   QG
Sbjct: 255 VFILPLQG 262


>gi|220934517|ref|YP_002513416.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995827|gb|ACL72429.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 61/314 (19%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           N  +W I Y D +T+L+AFF+VM+ I++ +       E  +     +L+ A +       
Sbjct: 14  NHEAWAIPYGDLITLLLAFFVVMYAISSVN-------EGKYRVLSDSLVAAFRAPPKSTE 66

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P +     +    +++  T++   L +G+   +                   +   + L 
Sbjct: 67  PIQIGEVGRPAPEMEQQQTRSLAPLDLGAAPAQPGV---------------IDRGMDDLL 111

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
           RD+E   D  ++                             + +  LA +I   +  L+ 
Sbjct: 112 RDAELDADELQAA---------------------------AEGMSRLADEIERAMLPLMD 144

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVIS 267
            ++++       R  I + I    NT +   S S  L  E + VLQ++  +L      I 
Sbjct: 145 ADLIR---MRRDRFWIEVEI----NTSLLFASGSAQLSSEAVPVLQRLATILRDFPARIQ 197

Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           + G TD  P    I   NW LS  RA S   +  ++ +   R++ I G+  +R    +D 
Sbjct: 198 VEGFTDTVPINTPIFPSNWELSAARAASVVNLFSRNQLDPTRMAAI-GYGEYRPIADNDT 256

Query: 327 MNS--ANRRIDILV 338
                 NRR+ I+V
Sbjct: 257 AEGRRQNRRVSIVV 270


>gi|261417399|ref|YP_003251082.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373855|gb|ACX76600.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327366|gb|ADL26567.1| putative chemotaxis MotB protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 216

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           ST+VI + G TD  PF  + +  NW LS +RA +  ++L+K G   DR+   +GF  HR 
Sbjct: 125 STDVIMVSGFTDDIPFSGSTSYTNWNLSTERAVNVVKMLVKMGFPPDRLFA-AGFGEHRP 183

Query: 321 KIASDP--MNSANRRIDILVEDRQ 342
           K  +D       NRR++I V   Q
Sbjct: 184 KYPNDSEEHRRLNRRVEIGVTPLQ 207


>gi|126649533|ref|ZP_01721774.1| flagellar motor protein MotB [Bacillus sp. B14905]
 gi|126593858|gb|EAZ87781.1| flagellar motor protein MotB [Bacillus sp. B14905]
          Length = 254

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 13/157 (8%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  Q+LA+ I  ++   +A N ++G    E T  G+L++I   R++ +FD   +   PE 
Sbjct: 90  KDQQELAE-IKDSVDNFIAVNEMEGQFATEMTDEGLLVTI---RDSILFDPGQATIKPEY 145

Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV--- 304
           I + +++  VL ++    I I GHTD  P       N  LSL RA + Y VL+ S     
Sbjct: 146 IPIAKELAGVLVSNPPRNIVITGHTDNVPAGPNFSSNLELSLMRASNFYMVLLDSNSQLK 205

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           SE+  +K  G+  +R    +D     + NRR+++L++
Sbjct: 206 SENFSAK--GYGENRAIAPNDTAEGRAKNRRVEVLIQ 240


>gi|88802157|ref|ZP_01117685.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
 gi|88782815|gb|EAR13992.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
          Length = 278

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEV-ISIRGHTDASPF- 277
           +T + ISI D+    +  KS S  + +   VVL+KI +V+    E+ + I GHTD+SP  
Sbjct: 144 KTVVFISISDK----LLFKSGSYNVTDGAYVVLEKIAKVINDQPEMEVMIEGHTDSSPIK 199

Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRR 333
           R I +DNW LS  RA +  ++L  K GV  +R+  I+      + +A +      S NRR
Sbjct: 200 REIIQDNWDLSALRATAITRILQYKFGVQPNRL--IAAARSQYVPLAPNDTAENKSKNRR 257

Query: 334 IDILVEDR 341
             I++  R
Sbjct: 258 TKIIIMPR 265


>gi|254446248|ref|ZP_05059724.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium
          DG1235]
 gi|198260556|gb|EDY84864.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium
          DG1235]
          Length = 260

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
          G+WK+ YADF+T +MA F+V+W + + D+  K+ + +YF       M  S G+ +     
Sbjct: 10 GAWKVAYADFVTAMMALFMVLW-LTSQDESLKRDLAKYFQDPYNTPMDNSMGVIESPTEG 68

Query: 91 ERSSQN 96
          + SS N
Sbjct: 69 QPSSAN 74



 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K L ++A++    L+   A+   K V  + T  G+ +++ D+   P F ++S+   P   
Sbjct: 87  KVLYEMAQEFMRLLNIDSANPDQKPVDLDVTSDGLRVTLYDRDAHPFFVENSADYTPWGS 146

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307
            V++ +  ++     ++ + G+     F     +   W LS DRA S  ++L + GV   
Sbjct: 147 FVIETLAWLVQRHNFMVRVDGYVSEG-FEGDGWEYTAWELSSDRANSTRRLLERYGVRRG 205

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDI 336
           +   ++   +        P   AN R+ I
Sbjct: 206 QFKSVTSHGNMEPLPFMHPTAEANDRVSI 234


>gi|254519411|ref|ZP_05131467.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA]
 gi|226913160|gb|EEH98361.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA]
          Length = 246

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNW 285
           II  R+  +F+ SSS    E+  VL KI  ++A     I + GHTD  P  N +R   NW
Sbjct: 125 IIQLRDNVLFETSSSDLREESKEVLNKINSLIASIDNQILVEGHTDNRPI-NTSRFPSNW 183

Query: 286 RLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            LS DRA +  +  ++  G    R S  +G+  +     +D     + NRR+DIL+
Sbjct: 184 ELSADRAVNVVKYFIEVMGQDPSRFSA-AGYGEYHPVAPNDTYENMAKNRRVDILI 238


>gi|87120689|ref|ZP_01076582.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86163917|gb|EAQ65189.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 292

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 13/157 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K+ K+ ++ AK+ISS L     + I KG V  ET    I I + ++ +   F+  S+   
Sbjct: 100 KQVKQTEEDAKQISSVLR----EEISKGTVEVETQERTITIRLKEKGS---FESGSAELN 152

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303
            + I ++  I +VL      I++ GHTD  P  N  R   NW+LS  RA S  + L  +G
Sbjct: 153 FDFIPIIDMIRDVLIGIQGTIAVEGHTDNIPV-NSGRFGSNWQLSSARAISVAEELFATG 211

Query: 304 VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             E +   ++G+A  R    +D     ++NRR+++++
Sbjct: 212 QLEQKRFSVTGYADTRPLAPNDTFFNRASNRRVELII 248


>gi|58582454|ref|YP_201470.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427048|gb|AAW76085.1| MotB protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 286

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ +       E  +    + L +A  G     +P  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                +++G T                           +L  D 
Sbjct: 67  ---------------------VQLGKTQ--------------------------TLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D + +++S T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  +
Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|117928060|ref|YP_872611.1| OmpA/MotB domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648523|gb|ABK52625.1| OmpA/MotB domain protein [Acidothermus cellulolyticus 11B]
          Length = 290

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++   D  ++I + L    A  +   V F     G+++SI+  +   +FD   +   P  
Sbjct: 130 RETFLDAERRIEAALQ---AKGLADSVKFRVETRGLIVSIVTDQV--LFDTGKADLRPIG 184

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSE 306
             VL  I  VL      IS+ GHTD  P        NW LS  RA +  + L+ + G+ E
Sbjct: 185 RQVLDAIAPVLRGLPNDISVEGHTDNVPITGGPFASNWELSAIRATTVLRYLVSNDGLPE 244

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +R+S  +G+A  R  + +D       NRR+DI+V
Sbjct: 245 ERMSA-TGYADTRPLVPNDTPEHRQQNRRVDIVV 277


>gi|260767264|ref|ZP_05876205.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260617772|gb|EEX42950.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 65/332 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 10  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  I  ++  P R     ID+ + +   IT+ +++   G  ++    QR   +   L+  
Sbjct: 70  GTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQR---DAGQLTGG 126

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q  E    + T+D++  +   +    +     EE                    ++ + +
Sbjct: 127 QSPE----TATQDNQNTETEMQQQQAQSQSMSEE--------------------METVLE 162

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            I   L   +    ++    E     I+I I   R    F + S+   P+   ++++I +
Sbjct: 163 SIKKALQREIEQGAIE---VENLGQQIVIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 216

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++     ++ + GHTD       + R NW LS  RA S  Q           + K+ GF 
Sbjct: 217 LVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFN 266

Query: 317 HHRLKIA----SDPMN--------SANRRIDI 336
           H RL++     +DP+         S NRR++I
Sbjct: 267 HQRLQVRGMADTDPLGPNDTEAQRSRNRRVEI 298


>gi|310644267|ref|YP_003949026.1| ompa/motb domain protein [Paenibacillus polymyxa SC2]
 gi|309249218|gb|ADO58785.1| OmpA/MotB domain protein [Paenibacillus polymyxa SC2]
          Length = 271

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 85/318 (26%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD +T+L+ FF+VM+ +++ D    D   ++++  F+  G +++    GI     
Sbjct: 21  WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSLQDTFHK-GDSILEQGSGITG--- 76

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                       + D + +KN    K  ++N+K                           
Sbjct: 77  ------------TADRYTSKNPPATKQPASNKK--------------------------- 97

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              E G    K T+ E++  K+E                  K LQ+L   I       + 
Sbjct: 98  ---EAGS--TKLTEREQAFRKQE------------------KELQNLMGVIQE----YIT 130

Query: 209 DNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           DN ++  +F + +  GI+I++ D+    +FD+  +     +   L K+  +       IS
Sbjct: 131 DNKLQNQIFVSDQPRGIVITLNDRF---LFDQGRAALKQGSANTLSKLASLFRDLKTPIS 187

Query: 268 IRGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-- 320
           I GHTD  PF      +  +DNW LS  RA S  +  +          + +G+A  R   
Sbjct: 188 IEGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFIDREQLSPSGFQYAGYADTRPVG 247

Query: 321 KIASDPMNSANRRIDILV 338
             +++     NRR++I V
Sbjct: 248 DNSTEAGRQKNRRVEITV 265


>gi|153005701|ref|YP_001380026.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029274|gb|ABS27042.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 256

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L+ + EVL     +VI + GHTD  P       NW LS+ RA +  + L +SGV   R+
Sbjct: 151 ALRAVAEVLTGVEGKVIRVEGHTDNVPLGRGFATNWDLSVARALAVVRFLQESGVQPSRL 210

Query: 310 SKISGFAHHRLKIASDPM---NSANRRIDILV 338
           +  +G+  H+  IAS+      S NRRI+I++
Sbjct: 211 A-AAGYGEHQ-PIASNDTPEGRSQNRRIEIVL 240


>gi|313674311|ref|YP_004052307.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941009|gb|ADR20199.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 315

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           EK+LA K +  +  L +K+S  L     +++      E     + +S+ +Q    +F+  
Sbjct: 147 EKVLADK-EAAVNALKQKVSEALLNFKENDLT----VEVKNGKVYVSLAEQ---LLFNSG 198

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN---IARDNWRLSLDRAYSAY 296
           S++   + +  L+K+ +VL  + +V I + GHTD  P        +DNW LS+ RA S  
Sbjct: 199 STVVDTKGVEALKKLAQVLKDNQDVNIVVEGHTDDVPISGNNKYLKDNWDLSVLRATSIV 258

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           ++L  +G S +R++  +G      K ++D       NRR +I++
Sbjct: 259 RILTNNGASPERVT-AAGKGEFAPKSSNDSAEGRRENRRTEIIL 301


>gi|206974802|ref|ZP_03235717.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|222095352|ref|YP_002529412.1| flagellar motor protein mots [Bacillus cereus Q1]
 gi|206746821|gb|EDZ58213.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|221239410|gb|ACM12120.1| chemotaxis protein MotB, putative [Bacillus cereus Q1]
          Length = 225

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ DL KK    L   V +N +  V      TG+ + I+D     +FD   +   PE 
Sbjct: 78  KKRMDDLYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             ++ K+          I + GHTD+ P  N     NW LS  RA +    L++    ED
Sbjct: 131 KEIISKLVGFFQSVPNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVED 190

Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
           +     G+A  +  + +D P N   NRR+ I +++
Sbjct: 191 KRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYIKE 225


>gi|315180895|gb|ADT87809.1| sodium-driven polar flagellar protein [Vibrio furnissii NCTC 11218]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 65/332 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 10  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  I  ++  P R     ID+ + +   IT+ +++   G  ++    QR   +   L+  
Sbjct: 70  GTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQR---DAGQLTGG 126

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q  E    + T+D++  +   +    +     EE                    ++ + +
Sbjct: 127 QSPE----TATQDNQNTETEMQQQQAQSQSMSEE--------------------METVLE 162

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            I   L   +    ++    E     I+I I   R    F + S+   P+   ++++I +
Sbjct: 163 SIKKALQREIEQGAIE---VENLGQQIVIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 216

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++     ++ + GHTD       + R NW LS  RA S  Q           + K+ GF 
Sbjct: 217 LVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFN 266

Query: 317 HHRLKIA----SDPMN--------SANRRIDI 336
           H RL++     +DP+         S NRR++I
Sbjct: 267 HQRLQVRGMADTDPLGPNDTEAQRSRNRRVEI 298


>gi|188576036|ref|YP_001912965.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520488|gb|ACD58433.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 286

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ +       E  +    + L +A  G     +P  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                +++G T                           +L  D 
Sbjct: 67  ---------------------VQLGKTQ--------------------------TLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D + +++S T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  +
Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|116327359|ref|YP_797079.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120103|gb|ABJ78146.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 224

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           L N ++ +SNS+     K+      E  + L +  +L +S+N+     L  + +E  L +
Sbjct: 11  LLNLVYCVSNSKYESLLKSYEESKLENQRILEEKVNLSRSLNE-----LKRIQEESELRI 65

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +  +RL  +A   S   +G +   I+ G +     + IL  +     +     +    + 
Sbjct: 66  QEYRRL--IATFRSLIDAGKLKIKIIDGRMVVVLSSDILFPV----GSAFLSSAGIASIR 119

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E   +L  +G       +   I GHTD +P       NW L+  RA +    ++K+G+ E
Sbjct: 120 EVTTLLASLG------GKRFQIEGHTDDTPTGIKGYTNWELASSRALNVLHTMIKAGMPE 173

Query: 307 DRISKISGFAHHRLKIASDPMN-SANRRIDILV 338
           +RIS  S  A       + P N SANRRI+I++
Sbjct: 174 ERISAASMGASRPALPNTSPENRSANRRIEIVI 206


>gi|161521534|ref|YP_001584961.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189352297|ref|YP_001947924.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
 gi|160345584|gb|ABX18669.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189336319|dbj|BAG45388.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
          Length = 219

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F    +  LP+ + VL++I + L  H+   I + GHTD+ P  N   + NW LS  RA 
Sbjct: 112 LFHVGDAHLLPDALPVLERIAQALGPHAAGDILVEGHTDSVPIANAKYESNWELSSARAG 171

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           +  + L + G++  R++ + G A  +  +A D  +S   NRR+ I V
Sbjct: 172 AVVRYLAERGIAPHRLAAV-GRADTQPLVAGDDASSRARNRRVTIFV 217


>gi|84624345|ref|YP_451717.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368285|dbj|BAE69443.1| MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 324

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W I YAD MT+L+AFF+VM+ I++ +       E  +    + L +A  G     +P  
Sbjct: 16  AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                +++G T                           +L  D 
Sbjct: 67  ---------------------VQLGKTQ--------------------------TLGADY 79

Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202
           ++   +     +  S    +   LP        P+S      + R +R  D + +++S T
Sbjct: 80  DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+   ++      T R   L   ++  +  +F   S+         L  +  VL  +
Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+   R +
Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252

Query: 322 I--ASDPMNSANRRIDILV 338
              +++   +ANRR+ +++
Sbjct: 253 ADNSTEAGRNANRRVVLII 271


>gi|221210919|ref|ZP_03583899.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221169875|gb|EEE02342.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 218

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F    +  LP+ + VL++I + L  H+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 111 LFHVGDAHLLPDALPVLERIAQALGPHATGDILVEGHTDSVPIANAKYESNWELSSARAG 170

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           +  +   + G++  R++ + G A  +  +A D  +S   NRR+ I V
Sbjct: 171 AVVRYFAERGIAPHRLAAV-GRADTQPLVAGDDASSRARNRRVTIFV 216


>gi|91229460|ref|ZP_01262927.1| flagellar motor protein [Vibrio alginolyticus 12G01]
 gi|91187396|gb|EAS73750.1| flagellar motor protein [Vibrio alginolyticus 12G01]
          Length = 186

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F + S+   P+   ++++I E++     ++ + GHTD  P    + R NW 
Sbjct: 58  VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWD 117

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334
           LS  RA S  Q           + K+ GF+H RL++             SD   + NRR+
Sbjct: 118 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRV 167

Query: 335 DI 336
           +I
Sbjct: 168 EI 169


>gi|28897464|ref|NP_797069.1| flagellar motor protein MotB [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840267|ref|ZP_01992934.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|260876424|ref|ZP_05888779.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034]
 gi|28805676|dbj|BAC58953.1| sodium-driven polar flagellar protein MotB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746069|gb|EDM57199.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|308092849|gb|EFO42544.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034]
 gi|328472526|gb|EGF43389.1| flagellar motor protein MotB [Vibrio parahaemolyticus 10329]
          Length = 315

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 133/339 (39%), Gaps = 73/339 (21%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79
            D  P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +   
Sbjct: 8   CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67

Query: 80  --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              KG  I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  +  
Sbjct: 68  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLTG 127

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTD---LEKSINKEENYFLPPLSKEKILAMKRKK 190
             + + S     S   D ++ +    S +   L +SI K               A++R+ 
Sbjct: 128 GQSPETSTQSNQSAESDMQQQQSEEMSQEMETLMESIKK---------------ALERE- 171

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                               I +G + E    G  I +I  R    F + S+   P+   
Sbjct: 172 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 209

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++++I E++     ++ I GHTD       + R NW LS  RA S  Q           +
Sbjct: 210 LVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQ----------EM 259

Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336
            K+ GF+H RL++             SD   + NRR++I
Sbjct: 260 EKVRGFSHQRLRVRGMADTEPLVPNDSDENRALNRRVEI 298


>gi|56461234|ref|YP_156515.1| flagellar motor protein MotB [Idiomarina loihiensis L2TR]
 gi|56180244|gb|AAV82966.1| Flagellar motor protein [Idiomarina loihiensis L2TR]
          Length = 312

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 54/323 (16%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTA 79
           P  L  W   +AD MT+LM FF+++   +  D    K I           N      +  
Sbjct: 18  PPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVLKFKQIAGSMKYALGVQNKIEVKDIPK 77

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
              +  ++  P R     I     E I + +V++    T Q  ++Q  E++    +  QQ
Sbjct: 78  GTSVIAQEFRPGRPEPTPI-----ETIQQQTVEM----TQQMLEFQEGESD---FAGGQQ 125

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                      +E+G     S D +K    E    +  +SKE             L ++I
Sbjct: 126 -----------TERGGQESDSADDQKEAEAENTEAMTQVSKE-------------LMRRI 161

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L     +N +K    E  + G  I II  R    F + S+   P+   ++Q++   L
Sbjct: 162 ERQL-----ENEIKAGTIELEQHGQQI-IIRIREQGSFPEGSAFLQPQFRPIIQQVAGAL 215

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                 ++I GH+D       I   +W LS  RA +  + ++K    SEDR+  + G++ 
Sbjct: 216 KDIPGEVTISGHSDNEKLVSEIYSSDWDLSSKRAVAVAEEMLKVDDFSEDRLV-VMGYSD 274

Query: 318 HRLKIA--SDPMNSANRRIDILV 338
            +  +   S+     NRR++I +
Sbjct: 275 TKPLVPNNSEENRKRNRRVEISI 297


>gi|53721140|ref|YP_110125.1| hypothetical protein BPSS0102 [Burkholderia pseudomallei K96243]
 gi|167818184|ref|ZP_02449864.1| hypothetical protein Bpse9_23811 [Burkholderia pseudomallei 91]
 gi|167896649|ref|ZP_02484051.1| hypothetical protein Bpse7_23090 [Burkholderia pseudomallei 7894]
 gi|167921273|ref|ZP_02508364.1| hypothetical protein BpseBC_22178 [Burkholderia pseudomallei
           BCC215]
 gi|52211554|emb|CAH37548.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
          Length = 433

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVA 351

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|172062063|ref|YP_001809715.1| hypothetical protein BamMC406_3023 [Burkholderia ambifaria MC40-6]
 gi|171994580|gb|ACB65499.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MC40-6]
          Length = 434

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K+RL    +++   LS L+ + I +G++   E  R     S++  R   MF     + LP
Sbjct: 285 KERLASAPQRLR--LSQLLRNEIARGLVTVDEDDRR----SVVVFRGDSMFASGKRVVLP 338

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305
           E   +L K+   +A     + + GHTD  P R+ A  DN  LS  RA    Q+L + G  
Sbjct: 339 EIEPILNKVASEVARVGGNVLVSGHTDNQPIRSAAFADNQVLSEKRAEFVAQILQRDGTP 398

Query: 306 EDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            +RI  +  G        A+    + NRR++I+V
Sbjct: 399 AERIRAVGKGDTQPVGDNATAAGRALNRRVEIMV 432


>gi|126444974|ref|YP_001061168.1| hypothetical protein BURPS668_A0162 [Burkholderia pseudomallei 668]
 gi|126224465|gb|ABN87970.1| SciP protein [Burkholderia pseudomallei 668]
          Length = 433

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVA 351

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|237508587|ref|ZP_04521302.1| type IV/VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
 gi|235000792|gb|EEP50216.1| type IV/VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
          Length = 439

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 302 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 357

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 358 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 417

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 418 VAENATPAGRSRNRRVEIAV 437


>gi|147678453|ref|YP_001212668.1| flagellar motor protein [Pelotomaculum thermopropionicum SI]
 gi|146274550|dbj|BAF60299.1| flagellar motor protein [Pelotomaculum thermopropionicum SI]
          Length = 255

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNI 280
           G+++S +D     +F   S+   PE    + KIG++L  +   I + GHTD  P   R  
Sbjct: 125 GLVLSFLD---VALFPLGSARLTPEAQETVGKIGKILLKAPNYIRVEGHTDNLPINTREF 181

Query: 281 ARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              NW LS+ RA S  Q L+ K     +R+S  +G+   R ++ +D       NRR+D++
Sbjct: 182 P-SNWELSVARATSVVQELIHKLNFPPERLSA-TGYGEFRPRMPNDSAEHRQQNRRVDLV 239

Query: 338 V 338
           +
Sbjct: 240 I 240


>gi|325954396|ref|YP_004238056.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437014|gb|ADX67478.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 297

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E +LA +RK  +  L + IS  L G       KG+        I +S+    N  +F   
Sbjct: 129 ENLLAQQRKA-IAKLKQSISDALRGFEG----KGITVYEKNGQIYVSM---ENKLLFSTG 180

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRAYSAY 296
                 E I  L ++  VL    ++ I I GHTD+ P+   +   +DNW LS+ RA +  
Sbjct: 181 KWDVRQEGISALVQLSSVLKKQNDLNILIEGHTDSVPYGAKQGDVQDNWDLSVMRATAVT 240

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI------ASDPMNSANRRIDILV 338
           ++L K GV   +++     A  R K       A++   + NRR++I++
Sbjct: 241 KILQKDGVRPTQMT-----AAGRSKYIPIGDNATESGKAKNRRVEIII 283


>gi|195953009|ref|YP_002121299.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932621|gb|ACG57321.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 271

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
           ++T +F   S+   P+   +L  I ++++     I I G TD +P   +    NW LS D
Sbjct: 121 QDTVLFKSGSADIDPKYYSLLDSIYKIISSLPNPIEIDGFTDNTPIHTLTFPSNWELSTD 180

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSA-NRRIDILVEDRQG 343
           RA S  +  +  G    +I KI+G+  +H L   + P N A NRR++I + + +G
Sbjct: 181 RAASVAKYFIFKGFDPSKI-KIAGYGKYHPLVPNTTPQNKAMNRRVEITILNIKG 234


>gi|217423043|ref|ZP_03454545.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|254182960|ref|ZP_04889553.1| OmpA family protein [Burkholderia pseudomallei 1655]
 gi|254264206|ref|ZP_04955071.1| SciP protein [Burkholderia pseudomallei 1710a]
 gi|254299754|ref|ZP_04967203.1| SciP protein [Burkholderia pseudomallei 406e]
 gi|157809358|gb|EDO86528.1| SciP protein [Burkholderia pseudomallei 406e]
 gi|184213494|gb|EDU10537.1| OmpA family protein [Burkholderia pseudomallei 1655]
 gi|217393951|gb|EEC33971.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|254215208|gb|EET04593.1| SciP protein [Burkholderia pseudomallei 1710a]
          Length = 439

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 302 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 357

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 358 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 417

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 418 VAENATPAGRSRNRRVEIAV 437


>gi|167722035|ref|ZP_02405271.1| hypothetical protein BpseD_23689 [Burkholderia pseudomallei DM98]
          Length = 433

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 351

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|76818070|ref|YP_336766.1| hypothetical protein BURPS1710b_A1609 [Burkholderia pseudomallei
           1710b]
 gi|126457603|ref|YP_001074182.1| hypothetical protein BURPS1106A_A0139 [Burkholderia pseudomallei
           1106a]
 gi|134280945|ref|ZP_01767655.1| SciP protein [Burkholderia pseudomallei 305]
 gi|167826573|ref|ZP_02458044.1| hypothetical protein Bpseu9_23060 [Burkholderia pseudomallei 9]
 gi|167848091|ref|ZP_02473599.1| hypothetical protein BpseB_22661 [Burkholderia pseudomallei B7210]
 gi|167905011|ref|ZP_02492216.1| hypothetical protein BpseN_22374 [Burkholderia pseudomallei NCTC
           13177]
 gi|167913331|ref|ZP_02500422.1| hypothetical protein Bpse112_22785 [Burkholderia pseudomallei 112]
 gi|226198766|ref|ZP_03794330.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242313911|ref|ZP_04812928.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254189633|ref|ZP_04896143.1| SciP protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254195529|ref|ZP_04901957.1| SciP protein [Burkholderia pseudomallei S13]
 gi|76582543|gb|ABA52017.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b]
 gi|126231371|gb|ABN94784.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|134247967|gb|EBA48051.1| SciP protein [Burkholderia pseudomallei 305]
 gi|157937311|gb|EDO92981.1| SciP protein [Burkholderia pseudomallei Pasteur 52237]
 gi|169652276|gb|EDS84969.1| SciP protein [Burkholderia pseudomallei S13]
 gi|225929206|gb|EEH25229.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242137150|gb|EES23553.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 433

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  LPE   VL K+   +A
Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 351

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|329895993|ref|ZP_08271251.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
 gi|328922074|gb|EGG29437.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
          Length = 354

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 30/232 (12%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           ST + +Q  +   ++F      Q++       RDS         +D  +S   + N   P
Sbjct: 148 STQRGRQLDQDTISLFAKVADAQTQVVSEIEIRDS-------SPSDSAESAQSQANAPAP 200

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P  ++ I     ++  Q+LA +IS +L           V  E  +  I I++ DQ     
Sbjct: 201 P--EDDIGDSDLEQIRQNLAPEISRSL-----------VNVEMDQDQIKITLADQG---A 244

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYS 294
           F   S+   PE + +L ++G+ ++ +  V+++ GHTD+ P  F    + NW LS  R+ S
Sbjct: 245 FVSGSADLRPEFLQLLNRVGDSISDTDGVVTVSGHTDSIPMAFSMRFKSNWDLSAARSAS 304

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343
               L+  G   D    + G+A   + IA++      + NRRI+I++ D++G
Sbjct: 305 VADYLITQGYLGDIEVSVQGYADT-VPIATNDTAEGRAKNRRIEIMI-DKKG 354


>gi|90022860|ref|YP_528687.1| flagellar motor protein MotB [Saccharophagus degradans 2-40]
 gi|89952460|gb|ABD82475.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 329

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 7/97 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           VL+++  VLA     I ++GHTD  P R+ AR   NW LS  R+ S    LM  G   +R
Sbjct: 194 VLKEVKSVLALRQGKIEVQGHTDNVPIRS-ARFGSNWALSSARSVSVAHELMAGGDIAER 252

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
             +++G+A     + +D     + NRR++IL+  +QG
Sbjct: 253 RFEVAGYADTMPIVPNDSAENRAINRRVEILI--KQG 287


>gi|167588461|ref|ZP_02380849.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 223

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP+   VL +I  VL AH    I + GHTD+ P      + NW LS  RA 
Sbjct: 116 LFNVGDARLLPDASGVLARIAGVLKAHPATSILVEGHTDSVPISTAKYESNWELSSARAG 175

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           +  + L++ GV   R++ I G A +   +A D     + NRR+ I V+
Sbjct: 176 AVVRYLVERGVEPHRLAAI-GRADNLPLVAGDDAAARAKNRRVTIFVQ 222


>gi|294084383|ref|YP_003551141.1| flagellar MotB protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663956|gb|ADE39057.1| flagellar MotB protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 384

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307
           ++Q+I EV A  +  I++ GHTD  P  F +  RDNW L+  RA S  Q L  SG V  +
Sbjct: 291 IMQQIAEVSAGGSSSINVSGHTDNVPLIFGSQFRDNWDLAAARASSVVQALEDSGQVPGN 350

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDI 336
           R+  +S F       ++D     + NRRI+I
Sbjct: 351 RMQAVS-FGESMPLESNDTAEGRALNRRIEI 380


>gi|78043824|ref|YP_359811.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995939|gb|ABB14838.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 266

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G++IS  D     +F   S+   P+   ++++IGE+L      I I GHTD  P  N +R
Sbjct: 132 GVVISFKD---AILFKLGSAELTPQAKAIVRQIGEILLPLPNYIRIEGHTDNLPI-NTSR 187

Query: 283 --DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
              NW LS  RA S    L+        R+S + G+  +R K+   S+     NRR+DI+
Sbjct: 188 FPSNWELSTARATSVVHELIDGLHFPPYRLSAV-GYGEYRPKVPNTSEQNRQKNRRVDIV 246

Query: 338 V 338
           +
Sbjct: 247 I 247



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W I YAD +T+LM FF+VM+ ++  D +  +A+ +
Sbjct: 16 WLITYADMITLLMVFFIVMYALSNVDANKFRALAE 50


>gi|329894187|ref|ZP_08270142.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
 gi|328923212|gb|EGG30533.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
          Length = 341

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +AD I  G L E  + G  I I+   N   FD  S+         L K+G  L+  +  +
Sbjct: 205 LADEIASG-LAEIEKQGDKI-IVRLANQGSFDSGSATLKNSFGGTLSKLGNTLSRYSGSV 262

Query: 267 SIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323
            I GHTD  P  F    + NW LS  RA +    L+ S   +     I G+A  + L   
Sbjct: 263 LIEGHTDNVPVGFSERFKSNWDLSASRAAAVADYLLTSTPLQGGSVMIKGYADSKPLDTN 322

Query: 324 SDPMNSA-NRRIDILVED 340
             P+  A NRRI+++V+D
Sbjct: 323 DSPVGRANNRRIEVIVDD 340


>gi|302389670|ref|YP_003825491.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200298|gb|ADL07868.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 248

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + + +T   ++ +N +KG+  E    G+ I  I+     +FD   +    +   VL KI 
Sbjct: 96  ENLENTFQEIINENNLKGIRVEREERGLAIRFIE---GALFDSGKAYLREDARQVLDKIA 152

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + GHTD  P  N     NW LS  RA +  +  + K  +S   IS    
Sbjct: 153 PILKKIQRPIRVEGHTDNVPIHNSEFPSNWELSTTRAVNVVRYFIEKHNISPHMISAAGY 212

Query: 315 FAHHRLKIASDPMNSA-NRRIDILV 338
             +H +       N A NRR+DI++
Sbjct: 213 GEYHPIAPNDSEKNRALNRRVDIII 237


>gi|261856274|ref|YP_003263557.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261836743|gb|ACX96510.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 323

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++ + L      I+++GHTD  P   +    NW LS  RA +  Q L+ SGV  +R+
Sbjct: 208 LLKRLADRLKAGDYPIAVQGHTDNVPIHTLQFPSNWELSAARAAAVVQELIASGVQPNRL 267

Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDI 336
           S I GFA      ++D  +  + NRR+D+
Sbjct: 268 SAI-GFADTHPITSNDTASGRAENRRVDL 295


>gi|308173338|ref|YP_003920043.1| motility protein MotB [Bacillus amyloliquefaciens DSM 7]
 gi|307606202|emb|CBI42573.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus amyloliquefaciens DSM 7]
 gi|328911414|gb|AEB63010.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus amyloliquefaciens LL3]
          Length = 267

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
           T+ G+LI+I   +++  FD   ++   E I + ++I  +L  +    I I GHTD  P +
Sbjct: 137 TKEGLLITI---KDSIFFDSGQAVIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 193

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N   + NW LS+ RA +   +L ++   + ++    GF  ++   ++      S NRR++
Sbjct: 194 NSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAASNKTAEGRSKNRRVE 253

Query: 336 ILVEDR 341
           +L++ R
Sbjct: 254 VLIQPR 259


>gi|94500736|ref|ZP_01307265.1| chemotaxis MotB protein [Oceanobacter sp. RED65]
 gi|94427058|gb|EAT12039.1| chemotaxis MotB protein [Oceanobacter sp. RED65]
          Length = 226

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 12/114 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
           ++D  S+   P+ + VL ++ +V+    H T ++ + GHTD  P        NW LS  R
Sbjct: 111 LYDSGSAAIRPQALPVLNEVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAAR 170

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DPMNSA-NRRIDILV 338
           A +  + L+  GV ++++ K SG+A  R K A       D    A NRR+ I V
Sbjct: 171 ASNVVKYLLGKGVKKEQL-KASGYADSRPKSAPIEGQVMDAQQRAENRRVVIYV 223


>gi|330903399|gb|EGH33971.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 50

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINA 56
          EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++
Sbjct: 2  ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSS 47


>gi|330722438|gb|EGH00277.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC2047]
          Length = 130

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +  I  VL +    IS+ GHTD+ P   ++ R NW LS  RA S    L K GV      
Sbjct: 1   MASIRTVLKNVEGKISVEGHTDSVPIATSVFRSNWDLSSARALSVAHELFKGGVLNSNRF 60

Query: 311 KISGFAHHRLKIASD-PMNSA-NRRIDILV 338
            ++GFA  +  +A+D   N A NRR++I++
Sbjct: 61  MVTGFADAKPLVANDNAANRAKNRRVEIII 90


>gi|328553736|gb|AEB24228.1| flagellar motor protein MotB [Bacillus amyloliquefaciens TA208]
          Length = 265

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
           T+ G+LI+I   +++  FD   ++   E I + ++I  +L  +    I I GHTD  P +
Sbjct: 135 TKEGLLITI---KDSIFFDSGQAVIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 191

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N   + NW LS+ RA +   +L ++   + ++    GF  ++   ++      S NRR++
Sbjct: 192 NSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAASNKTAEGRSKNRRVE 251

Query: 336 ILVEDR 341
           +L++ R
Sbjct: 252 VLIQPR 257


>gi|254785497|ref|YP_003072926.1| OmpA family protein [Teredinibacter turnerae T7901]
 gi|237684013|gb|ACR11277.1| OmpA family protein [Teredinibacter turnerae T7901]
          Length = 305

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F   S+ P      +  ++ +VLA     I++ GHTD  P RN   ++NW LS  RA +
Sbjct: 113 LFASGSAAPSTAAQQIFNELADVLAPFENAIAVSGHTDNVPIRNQQFQNNWELSAARAVA 172

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRI 334
              +L  +GV+ +R++  +G+   +  +A   S    +ANRR+
Sbjct: 173 VVNLLAYAGVAPERLAA-TGYGEFQ-PVADNNSAQGRAANRRV 213


>gi|157962805|ref|YP_001502839.1| flagellar motor protein MotB [Shewanella pealeana ATCC 700345]
 gi|157847805|gb|ABV88304.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 322

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++ +  KK++  L+  + D  ++    E+    I+I I   R    F   S    P    
Sbjct: 163 KINEQVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFASGSGFLQPRFKP 216

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V++++GE+L     ++++ GHTD     N +   NW LS  RA +    L+         
Sbjct: 217 VVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVGHELI--------- 267

Query: 310 SKISGFAHHRLKI----ASDPM---NSA-----NRRIDILVE 339
            K+ GF  +R+K+    +SDP+   NS+     NRR++I +E
Sbjct: 268 -KVKGFEPNRMKVVGMASSDPLVENNSSANRARNRRVEIAIE 308


>gi|226310457|ref|YP_002770351.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599]
 gi|226093405|dbj|BAH41847.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599]
          Length = 269

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFD 238
           +EK L    +K  +DL KK+ + L G +  N ++  L  + T  G+LI+I+D     +FD
Sbjct: 97  EEKRLEEAVRKETEDL-KKLQTKLDGYIQQNKLQDKLQTKLTDEGLLITILDNA---LFD 152

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297
              +   PE   +  ++  +L    + +++ GHTD  P R      NW LS  R+ +  +
Sbjct: 153 SGKADLKPEARKLASEMAGMLVPHPKKVTVTGHTDNVPIRRAEFPSNWDLSAKRSVNFLK 212

Query: 298 VLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           VL+++  +   + S    G  H      +D   + NRR+++ +
Sbjct: 213 VLLENKNLDPTKFSATGLGEYHPVAPNTTDEGRAKNRRVEVAI 255


>gi|154244796|ref|YP_001415754.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158881|gb|ABS66097.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2]
          Length = 340

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-------ISIRGHTDASPFRNIA-RDNWR 286
            FD+ S+ P PE +  L K+ G +L     +       + I GHTD  P        NW 
Sbjct: 225 FFDRGSATPRPEALAELDKLAGAILDLEKSIPPDISWALRIDGHTDNRPIATPQFPSNWE 284

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341
           LS  RA +  Q L+  GVS   +   +GF  ++     ASD   + NRRI++ + +R
Sbjct: 285 LSAARAIAVVQYLISKGVSPQHLIA-AGFGEYQPIDPAASDEARARNRRIELKLTER 340


>gi|291613031|ref|YP_003523188.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583143|gb|ADE10801.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 16/180 (8%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------NIVKGVLFETT 220
           ++++E YF       K L  +R  RL ++ +K + ++  L  D      + VK      +
Sbjct: 70  LSEQEMYF-------KSLVDRRNARLAEIQRKQNESMQNLAKDLNASMASFVKNGQMNVS 122

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           +TG  + + +   + +F +  +   PE +  L    +VLA +   I + GHTD  P    
Sbjct: 123 QTGRGVEL-EINASALFKQGEADIEPEALKTLADAAKVLAGNDFAIEVEGHTDNLPISTP 181

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
               NW LS  RA S  ++ +  G++  R+  +    +  +     P   A NRR+ I V
Sbjct: 182 KFPSNWELSSARASSVVRLFIDQGITAKRLKAVGSADNQPVDSNDTPEGRARNRRVTITV 241



 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 24/131 (18%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKK----AIEQYFNPFGKNLMTASKGIFDEQN 88
           W + YADF+T+L AFF+VM+ I++ ++   K    ++ Q F   GK    A +G      
Sbjct: 16  WMVSYADFITLLFAFFVVMYGISSVNEGKYKVFSVSVNQAFGANGK----AGEG------ 65

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIG--STNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
                  N I LS  E   K+ VD +    +  Q+KQ + ++N    L N+  +   KN 
Sbjct: 66  -------NAIHLSEQEMYFKSLVDRRNARLAEIQRKQNESMQNLAKDL-NASMASFVKNG 117

Query: 147 LTRDSEKGKDL 157
               S+ G+ +
Sbjct: 118 QMNVSQTGRGV 128


>gi|255021344|ref|ZP_05293392.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969207|gb|EET26721.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 279

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 123/317 (38%), Gaps = 79/317 (24%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNLMTASKGIFDEQNPPE 91
           W + YADF+T+L AFF+VM+ I++ ++   + + E   + F  + M+    I   QNP E
Sbjct: 16  WLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSETLVSAFTGHPMS----ITPVQNPAE 71

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            +    +       +       KI +T                         K  ++  +
Sbjct: 72  SAGPTSV-----LKLPPLPAVAKIAAT---------------------PSVAKGVVSPKA 105

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +  K    +TDL++ + K+    L PL             ++D +  I S+  G+V D  
Sbjct: 106 QAPKS---NTDLQQ-LQKQMEKLLQPL-------------IRDGSVAIHSSALGVVIDLN 148

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            K +LF + +  +                     PE    L  I ++L      I + G 
Sbjct: 149 AK-ILFPSGQATL--------------------TPEAQQNLAAIAKILKTVPYQIQVNGF 187

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           T+  P R      NW LS  RA +  ++ +  GV+ + +       +H +    +P N+A
Sbjct: 188 TNDLPIRTAQFPSNWYLSAARAVAVTELFIAEGVNPEHLVAAGYGQYHPI----EPNNTA 243

Query: 331 -----NRRIDILVEDRQ 342
                NRR+ I+V   Q
Sbjct: 244 AGLAMNRRVSIVVVAPQ 260


>gi|322421034|ref|YP_004200257.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320127421|gb|ADW14981.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 292

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 21/164 (12%)

Query: 191 RLQDL----AKKISSTLSGLVAD---NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
           RLQ L     +K S T S L+      + KG V     +  + ++++D   + +FD   +
Sbjct: 130 RLQKLKEEEVQKTSKTYSDLLEQMKGEMAKGQVTISELKGKLTVNMVD---SVLFDSGKA 186

Query: 243 IPLPETIVVLQKIGEVLAH-STEVISIRGHTD-ASPFRNIAR---DNWRLSLDRAYSAYQ 297
              PE +VVLQK+ ++L +   +V+ I GHTD       +A+    NW LS  RA +  +
Sbjct: 187 EVKPEGLVVLQKVIDILKNIKDKVVRIEGHTDNVQIVGQLAKRYPTNWELSAARAINVTR 246

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
            L + G+    ++ ++ +  H+  +A   +D   + NRRI+I++
Sbjct: 247 YLQQQGLDPALLAAVA-YGEHK-PVAPNDTDEGRAKNRRIEIVL 288


>gi|153002898|ref|YP_001377223.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026471|gb|ABS24239.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 510

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 8/112 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286
           ++ R    FD   +   PE+  +L +I +VLA   E+  + I GH+D+S     A  N R
Sbjct: 397 VELREKVQFDTGKATIKPESAGLLDEIAKVLAEHAEITRVVIEGHSDSS---GGAALNKR 453

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
           LS  RA +  + L++ G++++R+S   GF   R   ++D      ANRR++I
Sbjct: 454 LSQARADAVLKALVERGIAKERLSA-KGFGPSRPIASNDTPEGREANRRVEI 504


>gi|90415360|ref|ZP_01223294.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
 gi|90332683|gb|EAS47853.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
          Length = 408

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L K+GE +   + +I+I GHTD  P  F    R NW LS  R+ +    L+ S   +D 
Sbjct: 314 LLDKVGESITDGSSLITIEGHTDNIPMAFSERFRSNWDLSAARSAAVADYLLNSSEIDDG 373

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
              ++G A  +  + +D     S NRRI+++++
Sbjct: 374 RVSVTGLADTKPLVPNDSPEGRSKNRRIEVIID 406


>gi|83647833|ref|YP_436268.1| flagellar motor protein MotD [Hahella chejuensis KCTC 2396]
 gi|83635876|gb|ABC31843.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 260

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +RL+++A + +  L GL+   +V           I +S+   RN  +F+   ++P+    
Sbjct: 104 ERLREIANRFNYRLKGLIGQGMVS---INENDNWIELSL---RNNLLFNSGDAVPVDAAF 157

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308
            ++  I  +L      I + G TD  P R+ A   NW LS  R+ +  ++L+  GV   R
Sbjct: 158 NLIDGIAGILKDYPNAILVEGFTDNVPIRSSAYPSNWELSSARSAAVARLLIIGGVDPRR 217

Query: 309 ISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           ++ + G+  ++    +D       NRR+ +LV
Sbjct: 218 LAAV-GYGEYQPVARNDTSEGRQRNRRVVLLV 248



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ +++ ++   K + +
Sbjct: 17 WLVSYADFITLLFAFFVVMYSVSSVNEGKYKVLSE 51


>gi|269103244|ref|ZP_06155941.1| Flagellar motor rotation protein MotB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163142|gb|EEZ41638.1| Flagellar motor rotation protein MotB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 314

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 134/330 (40%), Gaps = 77/330 (23%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG-KNLMTAS---KG--IF 84
           +W   +AD  T+LM FF+++   +  D    K I     N FG +NL+  +   KG  + 
Sbjct: 14  AWMATFADLATLLMCFFVLLLSFSEMDVMKFKQIAGSMKNAFGVQNLLDINDIPKGTSVI 73

Query: 85  DEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            ++  P R     I++ + + I  T+ ++D   G +++    +R       L+  Q  + 
Sbjct: 74  AQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGESDKAGGTERSAGT---LTGGQADKK 130

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K       +   D  K   LEK +NK               A++R+             
Sbjct: 131 NKTQQQDQDQNASDSLKQ--LEKVLNK---------------AIERE------------- 160

Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
                   I +G V  E     ++I I +Q     F + S+   P+   +++++  ++  
Sbjct: 161 --------IEEGNVEIENFGQQLVIRIKEQG---AFPEGSAFLQPKFRPLVRQVASLVKD 209

Query: 262 STEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + I GHTD  P  + + R NW +S  RA S  Q           ++K++GF  HR+
Sbjct: 210 VPGTVRISGHTDDRPVESELYRSNWDISAQRAVSVAQ----------EMAKVTGFDQHRM 259

Query: 321 KIA----SDPMNS--------ANRRIDILV 338
           ++     + P+ S         NRR++I +
Sbjct: 260 QVVGLADTAPIASNDTAEGRKRNRRVEISI 289


>gi|239813534|ref|YP_002942444.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus S110]
 gi|239800111|gb|ACS17178.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus S110]
          Length = 442

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285
           S++  R    F   S+ P+  ++ VL++IG+ LA     + I GH+D  P R++    NW
Sbjct: 315 SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGEVLITGHSDNQPIRSLRYPSNW 374

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
            LS  RA  A +  + + V   R+ +  G A      A+D P N A NRR+DI++
Sbjct: 375 HLSAARA-DAVKGALTTLVEPARM-RSDGKADAEPVAANDTPANRARNRRVDIVL 427


>gi|229155299|ref|ZP_04283410.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
 gi|228628224|gb|EEK84940.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D+E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 30  SKMLEKFSDVEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 85

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + IID     +FD   +   PE   ++ ++          I + GHT
Sbjct: 86  SQVNVYREDTGVSVVIIDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 142

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 143 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|323495111|ref|ZP_08100198.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546]
 gi|323310662|gb|EGA63839.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 67/334 (20%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 11  PPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70

Query: 82  G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           G  I  ++  P R     ID+ + +   IT+ +++   G +++    QR + ++      
Sbjct: 71  GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGSL----TG 126

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            QS        ++SE   +  +S ++                          + L+ L +
Sbjct: 127 GQSPDTSTQNNQNSESDNEQQQSAEM-------------------------SQELETLME 161

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            I   L   +    ++    E     I I I   R    F + S+   P+   ++++I +
Sbjct: 162 SIKKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 215

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++     V+ + GHTD       + R NW LS  RA S  Q           + K+ GF 
Sbjct: 216 LVKDIPGVVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRGFN 265

Query: 317 HHRLKIA----SDPMN--------SANRRIDILV 338
           H RL++     ++P+         S NRR++I +
Sbjct: 266 HERLRVRGMADTEPLGPNDTEAQRSRNRRVEISI 299


>gi|39998119|ref|NP_954070.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA]
 gi|39985064|gb|AAR36420.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA]
          Length = 266

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           R G+++S+   +    FD  S+I       +L K+ E L+  +  + + GHTD  P  ++
Sbjct: 135 RRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESLSAYSNPVRVEGHTDTMPISSV 191

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDI 336
               NW LS  RA +    L +S   +      +GF  +R  IA +      S NRR+DI
Sbjct: 192 QFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEYR-PIADNNTAEGRSKNRRVDI 250

Query: 337 LVEDRQG 343
           ++   +G
Sbjct: 251 VLLSGEG 257


>gi|229138428|ref|ZP_04267017.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
 gi|228644965|gb|EEL01208.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
          Length = 213

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK       KKR+ DL KK    L   V +N +
Sbjct: 30  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKK----LKAYVDNNGI 85

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHT
Sbjct: 86  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 142

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|229172375|ref|ZP_04299934.1| OmpA/MotB domain protein [Bacillus cereus MM3]
 gi|228610846|gb|EEK68109.1| OmpA/MotB domain protein [Bacillus cereus MM3]
          Length = 227

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           L K +D+E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +  V
Sbjct: 47  LEKFSDVEQVDAKVMENTIPDISHEKNDEKMVSKKRMDELYKK----LKAYVDNNGISQV 102

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                 TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD+ 
Sbjct: 103 NVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSR 159

Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANR 332
           P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N   NR
Sbjct: 160 PIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNR 219

Query: 333 RIDILVED 340
           R+ I +++
Sbjct: 220 RVVIYIKE 227


>gi|94500546|ref|ZP_01307077.1| flagellar motor protein [Oceanobacter sp. RED65]
 gi|94427336|gb|EAT12315.1| flagellar motor protein [Oceanobacter sp. RED65]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 53/320 (16%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA--SKGIFDE 86
            L +W   + D M++LM FF+++      D        Q F      L  A   +     
Sbjct: 15  GLPAWLATFGDLMSLLMCFFVLLLSFAQMD-------AQKFKRLAGELRMAFGVQTTIRA 67

Query: 87  QNPPERSS--QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
            +PP+ +S        SI E    N +  K     Q                S     C+
Sbjct: 68  DDPPKGTSVIAKHFSPSIPEPTPINEIRQKTSDVTQ----------------SSLEVLCQ 111

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +++T  +E   +  K T  E ++ KE                + +K+  + A++ +  L+
Sbjct: 112 DAITAQTEAKGNTGKQTR-EITVPKES---------------ESQKKQAEQAEETAFELA 155

Query: 205 GLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +   I KG V  ET  + I+I I   R    F+   +    E + VL  I EVL    
Sbjct: 156 TELEREISKGQVELETQGSKIVIRI---REKGSFNAGGAYVEDEFLPVLDTIREVLVEVP 212

Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             IS+ GHTD++P     R   NW LS  RA +  + L  +    +   ++ G    R  
Sbjct: 213 GRISVEGHTDSTPLGRGGRYNSNWELSAARAAAVAEYLFIAPEMPESRFRVVGHGSVR-P 271

Query: 322 IASDPM---NSANRRIDILV 338
           +A +      + NRR++I+V
Sbjct: 272 VAENKTAEGRAKNRRVEIIV 291


>gi|217959212|ref|YP_002337760.1| flagellar motor protein MotS [Bacillus cereus AH187]
 gi|217063689|gb|ACJ77939.1| putative chemotaxis protein MotB [Bacillus cereus AH187]
          Length = 225

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK       KKR+ DL KK    L   V +N +
Sbjct: 42  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKK----LKAYVDNNGI 97

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHT
Sbjct: 98  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 154

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 155 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|289208360|ref|YP_003460426.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943991|gb|ADC71690.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 305

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294
           +F   S+   PE   +L ++G +LA     + + GHTD  P +  +   NW LS  RA +
Sbjct: 163 LFGSGSATLNPEARSLLDEVGAILAPRVSRVHVEGHTDNVPIQTAVYPSNWELSSGRAAA 222

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
              V   +G+    +  + G+  HR   ++D     + NRR+ I+V
Sbjct: 223 VVSVFEDAGIEPKNLVAL-GYGEHRPVASNDTEQGRAENRRVAIVV 267



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          +W I Y D +T+L+AFF+VM+ I++ DD   + + +
Sbjct: 15 AWAIPYGDLVTLLLAFFVVMYAISSVDDGKYRVLSE 50


>gi|311106778|ref|YP_003979631.1| motility protein B 2 [Achromobacter xylosoxidans A8]
 gi|310761467|gb|ADP16916.1| motility protein B 2 [Achromobacter xylosoxidans A8]
          Length = 320

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLD 290
           N  +F    +   P  + V++++  +L  +   +S+ GH+D  P   R  A  NW LS  
Sbjct: 189 NELLFPSGQATLSPTGLDVIKRLAAILNKNEYQVSVEGHSDPVPIQTRQFA-SNWELSSS 247

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           RA S  + L++ GVS  R+  + G+A  R   ++D     +ANRR++++++
Sbjct: 248 RATSVLRELVRDGVSAQRLRAV-GYAETRPIESNDTQAGRAANRRVELIMD 297


>gi|291336864|gb|ADD96396.1| OmpA/MotB domain containing protein [uncultured organism
           MedDCM-OCT-S09-C206]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKIS-GFAHHRLK 321
            I++ GHTD  P +N   RDNW L+  RA S  Q + ++G +  DR+S +S G       
Sbjct: 133 TITVTGHTDDVPIKNAQFRDNWDLAAGRASSVVQAIQRTGLIDGDRLSAVSKGETAPLAD 192

Query: 322 IASDPMNSANRRIDILV 338
            A+    S NRRI+I +
Sbjct: 193 NATAAGRSENRRIEIEI 209


>gi|295704127|ref|YP_003597202.1| chemotaxis protein MotB [Bacillus megaterium DSM 319]
 gi|294801786|gb|ADF38852.1| chemotaxis protein MotB [Bacillus megaterium DSM 319]
          Length = 277

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 62/314 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           SW + Y+D +T+L+A F+V++ +++ D    K + + FN           G+ + Q+   
Sbjct: 17  SWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAFVGGTGVMEFQS--- 69

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                   L   E   + S      ST +  + +   N         QS     SLT  S
Sbjct: 70  --------LQESEEAVQPSNTPAAKSTKKTNEVETAPN---------QSPASSQSLT--S 110

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E+ +   +  D E+                          LQ +  KI++ +      N+
Sbjct: 111 EQKEQTIREADQEE--------------------------LQQIQSKINAYIQ---KKNL 141

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
              +    T  G+LISI   R+  +FD   +    E   +   I E+L       I I G
Sbjct: 142 TNQLQTSLTEEGLLISI---RDNVLFDSGRAQVRSEDTKIANDISELLVIDPPRNIIISG 198

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           HTD  P RN     NW LS+ RA +  +V++K+      +    GF   +   +++    
Sbjct: 199 HTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLSPSMFSAKGFGEFKPVTSNNTAEG 258

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  R
Sbjct: 259 QAKNRRVEILITPR 272


>gi|86160609|ref|YP_467394.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777120|gb|ABC83957.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 248

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 10/128 (7%)

Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           + ET RT  G+L+   + +   +FD  SS   PE I  L+++G++LA +  + I I G+T
Sbjct: 122 IAETKRTENGLLV---EMKGDILFDSGSSALKPEAIGKLEQMGDILAKYGDDRIRIEGYT 178

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331
           D++  +++   N  LSL RA +  +VL+  GV E +I+ +  G         S    + N
Sbjct: 179 DSTGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITALGMGPVRPVADNGSATGRAQN 235

Query: 332 RRIDILVE 339
           RR+++ ++
Sbjct: 236 RRVELHID 243


>gi|320157195|ref|YP_004189574.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O]
 gi|319932507|gb|ADV87371.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F + S+   P+   ++++I E++     ++ I GHTD       + R NW 
Sbjct: 169 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 228

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPM--------NSANRRI 334
           LS  RA S  Q           + K+ GF+H RL++     +DP+         + NRR+
Sbjct: 229 LSAQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTDPLVDNDTEENRARNRRV 278

Query: 335 DI 336
           +I
Sbjct: 279 EI 280


>gi|323435973|ref|ZP_01049351.2| OmpA family protein [Dokdonia donghaensis MED134]
 gi|321496288|gb|EAQ39323.2| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S+     + + L  +   L  + E+ I+I  HTDA   +  A  N RLS+ RA S
Sbjct: 440 LFDLDSAKIKEISTITLNTVVATLKANPELKIAINAHTDA---QGSASYNKRLSMRRAAS 496

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338
           A + L+  G+S+DR+S   GF   +L I     +   N  NRRI+ +V
Sbjct: 497 AMEYLLSKGISKDRLSS-QGFGEEQLLINCTSCTPQENELNRRIEFVV 543


>gi|34497269|ref|NP_901484.1| flagellar motor protein MotD [Chromobacterium violaceum ATCC 12472]
 gi|34103125|gb|AAQ59488.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472]
          Length = 277

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L  L + ++  LS LV       V    +  GI I I   R++ +F    ++P  +++ 
Sbjct: 102 KLGQLTQNLAKALSPLVQSG---EVTITQSNQGIHIDI---RDSALFAVGQAVPNQQSMP 155

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++  + ++LA     I + G TD +P R  +   NW LS  RA    ++  +SGV   R+
Sbjct: 156 LMSNMAKLLAGVDNAIKVEGFTDDAPIRTPVFPSNWELSAARAGGVVRLFQESGVDPQRL 215

Query: 310 SKISGFAHHRLK-IASDPMNSANRRIDILVE 339
             +   A+  +   A+    + NRR+ I V+
Sbjct: 216 VAVGHGANQPVADNATADGRARNRRVTISVQ 246



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+T+L AFF+VM+ I++ ++   + +         +   +   I  +  PP  
Sbjct: 18  WLVSYADFITLLFAFFVVMYAISSLNEGKYRVMSSAI----MDAFRSGTTITVQTTPPTG 73

Query: 93  SSQNKIDLSIDEHITKNSV 111
            +   I++   + I K++ 
Sbjct: 74  GANTMIEIPQTKPIAKSTA 92


>gi|294498805|ref|YP_003562505.1| chemotaxis protein MotB [Bacillus megaterium QM B1551]
 gi|294348742|gb|ADE69071.1| chemotaxis protein MotB [Bacillus megaterium QM B1551]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 62/314 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           SW + Y+D +T+L+A F+V++ +++ D    K + + FN           G+ + Q+   
Sbjct: 17  SWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAFVGGTGVMEFQS--- 69

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                   L   E   + S      ST +  + +   N         QS     SLT  S
Sbjct: 70  --------LQESEEAVQPSNTPAAKSTEKTNEVETAPN---------QSPASSQSLT--S 110

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E+ +   +  D E+                          LQ +  KI++ +      N+
Sbjct: 111 EQKEQTIREADQEE--------------------------LQQIQSKINAYIK---KKNL 141

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
              +    T  G+LISI   R+  +FD   +    E   +   I E+L       I I G
Sbjct: 142 TNQLQTSLTEEGLLISI---RDNVLFDSGRAQVRSEDTKIANDISELLVIDPPRNIIISG 198

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           HTD  P RN     NW LS+ RA +  +V++K+      +    GF   +   +++    
Sbjct: 199 HTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLNPSMFSAKGFGEFKPVTSNNTAEG 258

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  R
Sbjct: 259 QAKNRRVEILITPR 272


>gi|254473145|ref|ZP_05086543.1| OmpA/MotB [Pseudovibrio sp. JE062]
 gi|211957866|gb|EEA93068.1| OmpA/MotB [Pseudovibrio sp. JE062]
          Length = 344

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307
            +L+  G++      V+ + GHTDA P     R  DNW LS  RA S  + L+  GV  D
Sbjct: 250 AILELEGQIPDEINWVLRVDGHTDARPLSGTGRLRDNWELSAARAISVVKYLISKGVEPD 309

Query: 308 RISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341
           R+   +GF   +   +  +D   + NRRI++ +  R
Sbjct: 310 RLVA-AGFGEFQPLEEGTTDEAYAKNRRIELKLTQR 344


>gi|226944839|ref|YP_002799912.1| flagellar motor protein [Azotobacter vinelandii DJ]
 gi|226719766|gb|ACO78937.1| Flagellar motor protein [Azotobacter vinelandii DJ]
          Length = 275

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VLQ++  VL  S   I + GHTD+ P R+     NW LS  RA S  + L  +GV+  R+
Sbjct: 175 VLQQLVPVLNSSRHDIVVVGHTDSLPIRSTRFPSNWELSGARAGSVVRYLEANGVARQRM 234

Query: 310 SKISGFAHHR--LKIASDPMNSANRRIDILVEDRQ 342
             + G A  R  L+ +S    + NRR+++++E  Q
Sbjct: 235 RAV-GLADTRPLLENSSPEGRAGNRRVELILETPQ 268


>gi|95929859|ref|ZP_01312600.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95134155|gb|EAT15813.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +Q L  +I + ++ L  D  +K V     R  +++ I D   + +F   SS   P    V
Sbjct: 82  VQRLYTRIMTQMNRLRMDPSIKVV---KDRGAVILQIND---SILFAPGSSTLKPAAFPV 135

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRIS 310
           L K+ E++        I GHTD  PF      NW LS+ R+ S  +   K+ +   +R+S
Sbjct: 136 LAKVAELIRPLPLSARIEGHTDDIPFGRADMSNWDLSVARSVSVLKYFQKNDLLPLNRMS 195

Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILVE 339
            +   A   L     P N A NRR++ ++E
Sbjct: 196 AVGYGAEKPLVPNDSPENRAKNRRVEFVLE 225


>gi|242280858|ref|YP_002992987.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123752|gb|ACS81448.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 250

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++ K KK +  L   I + +S   A  + K +   T + G+L+ +  +    +F   ++ 
Sbjct: 92  VSAKAKKDMHALEVDIRAFIS---AGKMEKLMAVNTDQQGVLVRVPTR---AIFKPGTAQ 145

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ-VLMK 301
             P+  V+L K+  ++      + +RGHTD    +N I   NW LS  RA S  + +L K
Sbjct: 146 INPKATVLLDKVASIMKKKDFNLVVRGHTDDRATKNNIYSSNWELSAARAASCLRYILKK 205

Query: 302 SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           SGVS  R+  + G+A  +  +   S+   + NRR++   +
Sbjct: 206 SGVSSKRLKAV-GYAGTKPLVPNTSNRNRAINRRVEFYYQ 244


>gi|319791244|ref|YP_004152884.1| type IV / vi secretion system protein, dotu family [Variovorax
           paradoxus EPS]
 gi|315593707|gb|ADU34773.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus EPS]
          Length = 454

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285
           S++  R    F   S+ P+  ++ VL++IG+ LA     + I GH+D  P R++    NW
Sbjct: 316 SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGDVLITGHSDNQPIRSLRYPSNW 375

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
            LS  RA  A +  + + V   R+ +  G A      A+D P N A NRR+DI++
Sbjct: 376 HLSAARA-DAVKGALTTLVDPARM-RSDGKADAEPVAANDTPANRARNRRVDIVL 428


>gi|298206940|ref|YP_003715119.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83849574|gb|EAP87442.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 321

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E ++A K  K +Q L   +SS L     D   KG+  E     + +S+    N  +F+  
Sbjct: 153 ESVIAAKEAK-MQALKTAVSSAL----GDFEGKGLTVEQRNGKVYVSM---ENKLLFNSG 204

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
           S     E    + ++GEVLA + ++ + I GHTD  P+      +DNW LS  RA S   
Sbjct: 205 SWAVGSEGRRAVNQLGEVLASNPDIAVLIEGHTDNVPYGGNGPLQDNWDLSTKRATSIVN 264

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           +L ++   + +    +G   + L IAS+   +    NRRI++++
Sbjct: 265 ILRENSQIDPQNLTAAGRGEY-LPIASNDSATGKAKNRRIEVIL 307


>gi|172064681|ref|YP_001812331.1| DotU family type IV/VI secretion system protein [Burkholderia
           ambifaria MC40-6]
 gi|171998166|gb|ACB69082.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MC40-6]
          Length = 436

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + + +G+L   E  R     S++  +   MF    S  LP     L K+G  +A
Sbjct: 297 LSYLLRNEVARGLLTVDEDDRR----SVVVFKGDSMFASGQSTVLPVVEPALGKVGGEVA 352

Query: 261 HSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHH 318
                + +RGHTD  P R+ +   N  LS  RA    Q+L + G   DRI  I  G    
Sbjct: 353 RVGGSVLVRGHTDNQPIRSAVFPSNLVLSEKRAAYVAQILQQRGTPADRIHAIGKGDTQP 412

Query: 319 RLKIASDPMNSANRRIDILV 338
               A+    + NRR++I+V
Sbjct: 413 VGDNATAAGRALNRRVEIVV 432


>gi|254491758|ref|ZP_05104937.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224463236|gb|EEF79506.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 306

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 10/147 (6%)

Query: 197 KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           K+++  LSG +AD I  + V+ +     + + I   ++  +F+   +      + V+ KI
Sbjct: 113 KELTKQLSGALADMIETEDVIIKQGEDWLELEI---KSRVLFESGEARLERAAVPVIGKI 169

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            ++L  S   I + G TD +P  N +R   NW LS  RA S   +L + G+  DR+S I 
Sbjct: 170 ADILQTSANPIQVEGFTDNNPI-NTSRFPSNWELSAARAASVVHLLDRYGIQPDRMSAI- 227

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILV 338
           G+  ++     A++     NRR+ ++V
Sbjct: 228 GYGEYKPIADNATEEGRQKNRRVVLVV 254


>gi|169831941|ref|YP_001717923.1| OmpA/MotB domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638785|gb|ACA60291.1| OmpA/MotB domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 257

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 20/155 (12%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +K++Q+L ++     +GL A      +   T   G++ISI D   T +F   S+   P  
Sbjct: 105 QKQVQELMEE-----AGLTAH-----IEMTTEERGLVISIQD---TVLFATGSADLTPTA 151

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVS 305
             ++ K+G +L  +   I I GHTD  P  N  R   NW LS  R+ S  + L+ +    
Sbjct: 152 REIMDKLGLILLQTPNYIRIEGHTDNVPI-NTPRFPSNWELSAARSTSVVRYLIARHNFP 210

Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            +R+S  +G+  +R +  +D       NRR+D +V
Sbjct: 211 PERLSA-TGYGEYRPRDTNDTAQGRQRNRRVDFVV 244


>gi|45658882|ref|YP_002968.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602127|gb|AAS71605.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 223

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPL------PETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278
           I IID R   +       P+      P     ++++  +LA    +   I GHTD +P  
Sbjct: 85  IKIIDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTG 144

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
                NW L+  RA +    ++K+G+ E RIS  S  A       + P N S+NRRI+I+
Sbjct: 145 IKGYTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIV 204

Query: 338 V 338
           +
Sbjct: 205 I 205


>gi|30261729|ref|NP_844106.1| flagellar motor protein MotS [Bacillus anthracis str. Ames]
 gi|47526945|ref|YP_018294.1| flagellar motor protein MotS [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184555|ref|YP_027807.1| flagellar motor protein MotS [Bacillus anthracis str. Sterne]
 gi|165869455|ref|ZP_02214114.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488]
 gi|167633407|ref|ZP_02391732.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442]
 gi|167639130|ref|ZP_02397403.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193]
 gi|170686155|ref|ZP_02877377.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465]
 gi|170706447|ref|ZP_02896907.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389]
 gi|177650324|ref|ZP_02933291.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174]
 gi|190566282|ref|ZP_03019200.1| putative chemotaxis protein MotB [Bacillus anthracis
           Tsiankovskii-I]
 gi|218902843|ref|YP_002450677.1| putative chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225863587|ref|YP_002748965.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|227815517|ref|YP_002815526.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|229604338|ref|YP_002866130.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248]
 gi|254683216|ref|ZP_05147077.1| flagellar motor protein MotS [Bacillus anthracis str. CNEVA-9066]
 gi|254723805|ref|ZP_05185591.1| flagellar motor protein MotS [Bacillus anthracis str. A1055]
 gi|254734568|ref|ZP_05192280.1| flagellar motor protein MotS [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740977|ref|ZP_05198665.1| flagellar motor protein MotS [Bacillus anthracis str. Kruger B]
 gi|254755218|ref|ZP_05207252.1| flagellar motor protein MotS [Bacillus anthracis str. Vollum]
 gi|254759755|ref|ZP_05211779.1| flagellar motor protein MotS [Bacillus anthracis str. Australia 94]
 gi|30255957|gb|AAP25592.1| putative chemotaxis protein MotB [Bacillus anthracis str. Ames]
 gi|47502093|gb|AAT30769.1| putative chemotaxis protein MotB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178482|gb|AAT53858.1| chemotaxis protein MotB, putative [Bacillus anthracis str. Sterne]
 gi|164714895|gb|EDR20413.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488]
 gi|167512920|gb|EDR88293.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193]
 gi|167531445|gb|EDR94123.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442]
 gi|170128545|gb|EDS97412.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389]
 gi|170669852|gb|EDT20593.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465]
 gi|172083468|gb|EDT68528.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174]
 gi|190562417|gb|EDV16384.1| putative chemotaxis protein MotB [Bacillus anthracis
           Tsiankovskii-I]
 gi|218535723|gb|ACK88121.1| putative chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225787259|gb|ACO27476.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|227002562|gb|ACP12305.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|229268746|gb|ACQ50383.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 42  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 98  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|146277438|ref|YP_001167597.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555679|gb|ABP70292.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 367

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           PP+  E+  A+++  R +    ++ + L   VA+ +VK    E     + +S+    +  
Sbjct: 204 PPVGGEQGAALRKSVRAELDTLRLRNALDREVAEGLVK---VEQMDGKVFVSLGAGGS-- 258

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
            F   S +   +   V+ +I E   H    I++ GHTD  P    A RDN  L+  RA S
Sbjct: 259 -FTSGSDVLSEDARAVMSRIAEATQHPERTITVTGHTDNVPVAGGAFRDNIALAAGRAAS 317

Query: 295 AYQVLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
             + L+ + GV   RI+ +S G        A++   + NRRI+I
Sbjct: 318 VVRELVATGGVDPGRITAVSRGEFDPVADNATEAGRTQNRRIEI 361


>gi|89100104|ref|ZP_01172973.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
 gi|89085194|gb|EAR64326.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 187 KRKKRLQDLAKKISSTL--SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           + ++RL++L +++   L  +GL  D IV       T  G+++ + +Q    +F+   +  
Sbjct: 71  QEEERLENLLQEVEGYLEKNGL-EDVIVAN----RTERGVVLVLQEQV---LFESGEAEI 122

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303
           +      L K+G +L     ++ + GHTD  P        NW LS  RA S  + L  +G
Sbjct: 123 IDRNSGFLDKVGSLLVGMPNLVKVEGHTDNRPIATYRYPSNWELSAARASSVIRYLAGTG 182

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           V   R   + G+   R  + +D   +   NRR+++++ D
Sbjct: 183 VDSKRFIAV-GYGDTRPLVPNDSAENLEKNRRVEVIISD 220


>gi|49480957|ref|YP_035848.1| flagellar motor protein MotS [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143729|ref|YP_083099.1| flagellar motor protein MotS [Bacillus cereus E33L]
 gi|196033392|ref|ZP_03100804.1| putative chemotaxis protein MotB [Bacillus cereus W]
 gi|196039124|ref|ZP_03106431.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|196045046|ref|ZP_03112279.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|49332513|gb|AAT63159.1| chemotaxis motB protein, OmpA family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51977198|gb|AAU18748.1| chemotaxis motB protein, OmpA family [Bacillus cereus E33L]
 gi|195993826|gb|EDX57782.1| putative chemotaxis protein MotB [Bacillus cereus W]
 gi|196024048|gb|EDX62722.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|196030269|gb|EDX68869.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 42  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 98  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|153003419|ref|YP_001377744.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026992|gb|ABS24760.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 205

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 10/128 (7%)

Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           + ET RT  GIL+++   +N  +FD +S+    E +  L ++G++LA ++ + I I GHT
Sbjct: 79  VAETKRTENGILVNM---KNDILFDTNSADLKGEAVTQLTQVGDILAKYADDRIRIEGHT 135

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331
           D+S   ++   N  LS  RA S   VL+  GV E++I+ +  G        A+    + N
Sbjct: 136 DSSGSDSL---NEALSRKRADSVRTVLVSRGVREEQITVVGNGETKPIADNATKEGRAKN 192

Query: 332 RRIDILVE 339
           RR+++ ++
Sbjct: 193 RRVELHID 200


>gi|91776302|ref|YP_546058.1| OmpA/MotB [Methylobacillus flagellatus KT]
 gi|91710289|gb|ABE50217.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 267

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           PLS+   L  +R+++ Q+    + +TL+  + +    G +    T  G+ I I D     
Sbjct: 94  PLSR---LQKERQRKEQESISAMIATLNRALGNLATNGKISISKTSLGVRIDIAD---GV 147

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F   S+    E    + +I ++LA     I + GHTD  P  N     NW LS  RA S
Sbjct: 148 LFQAGSAAIKAEADAPISEITQILADQQYAIQVEGHTDNVPISNAQFPSNWELSSMRATS 207

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338
             + ++++G+   R+S + G++  +  IA +      + NRR+ I+V
Sbjct: 208 VVRKMIENGIDAARLSAV-GYSDTQ-PIADNQTAEGRAQNRRVSIMV 252



 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          + ++   +D P+N   W + YADF+T+L AFF+VM+ I++ +D   K +
Sbjct: 1  MGRRRKFEDEPDNNDRWLVSYADFITLLFAFFVVMYGISSVNDQKYKEL 49


>gi|24213198|ref|NP_710679.1| flagellar motor protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24193917|gb|AAN47697.1| flagellar motor protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 223

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPL------PETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278
           I IID R   +       P+      P     ++++  +LA    +   I GHTD +P  
Sbjct: 85  IKIIDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTG 144

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
                NW L+  RA +    ++K+G+ E RIS  S  A       + P N S+NRRI+I+
Sbjct: 145 IKGYTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIV 204

Query: 338 V 338
           +
Sbjct: 205 I 205


>gi|262274767|ref|ZP_06052578.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
 gi|262221330|gb|EEY72644.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
          Length = 309

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           II  R    F   S+   P+   ++++I +++     ++ + GHTD SP    + R NW 
Sbjct: 173 IIRIRENGAFPAGSAFLQPKFRPLVRQIADLVKDVPGIVRVSGHTDDSPLDSELYRSNWD 232

Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
           LS  RA S  Q + K  G    R+ ++ G A    ++ +D P N A NRR++I +
Sbjct: 233 LSAQRAVSVAQEMEKVEGFDPMRM-RVEGLAGSSPRVPNDTPENRAQNRRVEIAI 286


>gi|121997146|ref|YP_001001933.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121588551|gb|ABM61131.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L   +A+ +  G V       G+L+   +Q    +  K  S P    + VL ++ 
Sbjct: 101 EILEALQEALAEELAAGDVELGEGEDGVLLRFPEQAAFALGSKEISEPF---VPVLDRVA 157

Query: 257 EVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VLA +  +I + GHTD  P R +  R N+ LS  RA S   +L  +G++ +R+      
Sbjct: 158 GVLADTPGLIRVSGHTDDIPIRSDRFRSNFELSTARAISVVHILKDAGITPERLIAQGHG 217

Query: 316 AHHRLKIASDPMNSA-NRRIDILVED 340
               L     P   A NRR+D+ + D
Sbjct: 218 ETRPLAPNETPEQRARNRRVDVHLVD 243


>gi|65318994|ref|ZP_00391953.1| COG1360: Flagellar motor protein [Bacillus anthracis str. A2012]
 gi|228933012|ref|ZP_04095875.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826613|gb|EEM72384.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 227

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 44  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 217 KNRRVVIYIKE 227


>gi|56963749|ref|YP_175480.1| motility protein B [Bacillus clausii KSM-K16]
 gi|56909992|dbj|BAD64519.1| motility protein B [Bacillus clausii KSM-K16]
          Length = 252

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 96/315 (30%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
           +W + YAD +T+L+A F+V++ +   D    D  K  + +             +GI D Q
Sbjct: 19  TWLLPYADMLTLLVALFIVLFAMGQIDQAKYDQLKIVLSETL---------GGQGILDNQ 69

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           N            ++DE      VD                            E  +N+L
Sbjct: 70  N------------ALDE------VD----------------------------EQARNTL 83

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
             D     +L +++ LE+S  ++    L    +EK LA     RLQ              
Sbjct: 84  ESDP---SELSEASKLERSELEQLQARLNGYIEEKQLA----DRLQT------------- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVI 266
                     E   +G+LI+I D     +F   S+    ++I +++++  +LA      I
Sbjct: 124 ----------ELGASGLLITIND---GILFASGSAELKSDSIELIEQLSAMLASDPPRYI 170

Query: 267 SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            I GHTD  P  N   D NW LS  RAY+  ++  +    E      +G+  +    +++
Sbjct: 171 QISGHTDNVPMGNNEFDSNWELSSARAYNVMKLFFEYDHFEPAQLSFAGYGEYHPITSNE 230

Query: 326 PMNS--ANRRIDILV 338
                 ANRR+++LV
Sbjct: 231 TAEGRQANRRVEVLV 245


>gi|118477164|ref|YP_894315.1| flagellar motor protein MotS [Bacillus thuringiensis str. Al Hakam]
 gi|228945331|ref|ZP_04107686.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229183920|ref|ZP_04311136.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|301053265|ref|YP_003791476.1| flagellar motor protein [Bacillus anthracis CI]
 gi|118416389|gb|ABK84808.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam]
 gi|228599572|gb|EEK57176.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|228814303|gb|EEM60569.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|300375434|gb|ADK04338.1| flagellar motor protein [Bacillus cereus biovar anthracis str. CI]
          Length = 227

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 44  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 217 KNRRVVIYIKE 227


>gi|110833095|ref|YP_691954.1| hypothetical protein ABO_0234 [Alcanivorax borkumensis SK2]
 gi|110646206|emb|CAL15682.1| Flagellar motor protein [Alcanivorax borkumensis SK2]
          Length = 213

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
           L  ++ KRL +  ++++  L   +AD +  G V F   R GI  S++ Q N+        
Sbjct: 48  LEQEKAKRLAEEQRRMA--LEEALADPLASGRVTFNNGRIGISGSVLFQLNSDRLQPEGK 105

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR--DNWRLSLDRAYSAYQVL 299
             L + +  LQ     L+   +++ + G TDA P  R   R  DNW LS  RA +  + L
Sbjct: 106 ALLSDLVKPLQVF---LSQHDDMLMVSGFTDALPINRGNGRYADNWGLSAQRALTVTRTL 162

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
           ++ G+  D++   + F  ++    +D  +S   NRR+++    RQ
Sbjct: 163 IEQGMPADQVFA-AAFGDNQPVAPNDDADSRARNRRVELTTVPRQ 206


>gi|30019773|ref|NP_831404.1| flagellar motor protein MotS [Bacillus cereus ATCC 14579]
 gi|229127054|ref|ZP_04256053.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|29895318|gb|AAP08605.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579]
 gi|228656407|gb|EEL12246.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
          Length = 226

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N + 
Sbjct: 44  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGIS 99

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 100 QVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTD 156

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
           + P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N   
Sbjct: 157 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEK 216

Query: 331 NRRIDILVED 340
           NRR+ I +++
Sbjct: 217 NRRVVIYIKE 226


>gi|154685777|ref|YP_001420938.1| flagellar motor protein MotB [Bacillus amyloliquefaciens FZB42]
 gi|154351628|gb|ABS73707.1| MotB [Bacillus amyloliquefaciens FZB42]
          Length = 261

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
           T+ G+LI+I   +++  FD   +    E I + ++I  +L  +    I I GHTD  P +
Sbjct: 131 TKEGLLITI---KDSIFFDSGRADIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 187

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N   + NW LS+ RA +   +L ++   + ++    GF  ++  +++      S NRR++
Sbjct: 188 NSQYQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAVSNKTAEGRSKNRRVE 247

Query: 336 ILVEDR 341
           +L++ R
Sbjct: 248 VLIQPR 253


>gi|120437856|ref|YP_863542.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117580006|emb|CAL68475.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 320

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 26/233 (11%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           +K Y+ LE +   L      ++   ++  +S + +DL    D +++   +E   L  L  
Sbjct: 84  EKNYESLEKSYDALE-----QNSSAAIAENSRQNRDLLGQLDEKEAALLQEKNRLEKL-- 136

Query: 181 EKILAMKRKKRLQDLAKKISS------TLSGLVADNIV----KGVLFETTRTGILISIID 230
           EK LA+ R +R+ DL   I++       L   V++ +     KG+  E     + +S+  
Sbjct: 137 EKDLAL-RSQRINDLENVIAAKDAKMNALKNAVSNALTNFEGKGLSVEQRDGKVYVSM-- 193

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRL 287
             N  +FD  S     E    +Q++G VL  + ++ + I GHTD  P+      +DNW L
Sbjct: 194 -ENKLLFDSGSWAVNSEGRKAVQQLGTVLGQNPDIAVLIEGHTDNVPYGGSGQLKDNWDL 252

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           S  RA +  Q+L ++   + +    +G   +    ++D     + NRRI++++
Sbjct: 253 STKRATAIVQILRENSNIDPQSLTAAGRGEYAPVGSNDTEAGKAKNRRIEVIL 305


>gi|330830039|ref|YP_004392991.1| chemotaxis protein MotB [Aeromonas veronii B565]
 gi|328805175|gb|AEB50374.1| Chemotaxis protein MotB [Aeromonas veronii B565]
          Length = 291

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293
           +F   S+   P+ I ++ KI  +LA+    + + GHTD S  P   + R+NW LS+ RA 
Sbjct: 171 LFPADSAFLQPQFIPLVNKIAGILANIPGQVVVTGHTDNSQAPV-ELYRNNWELSVLRAS 229

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336
           S  Q ++ +   + R     G A  + + A+D P +  ANRR+DI
Sbjct: 230 SIVQTMLTNPQLDARRVIAQGVADTQPRFANDTPEHRQANRRVDI 274



 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFN---- 70
          + KKK A  + P N   W + YADFMT+L A F+V++    A   +T+  I+ +      
Sbjct: 1  MAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58

Query: 71 ------PFGKNLMTASKGIFDEQN 88
                P G  LM    GI + ++
Sbjct: 59 IGLISPPAGSPLMQGGTGILEPES 82


>gi|291286231|ref|YP_003503047.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883391|gb|ADD67091.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 8/149 (5%)

Query: 192 LQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++ + +K++ +L   V +  + + V    T+ G+ + I+D+    +F   S+  L +   
Sbjct: 82  VRSVQRKVTKSLREYVKSAQMSQVVTIAETKKGVSVRILDKM---LFKSGSAEILDQGKP 138

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L K+  V+  S   I + GHTD  P    +   NW LS  RA S  +  M   VS  R+
Sbjct: 139 LLDKLAAVIEESPFNIMVEGHTDDIPISTALYPSNWELSTARAVSVVKYFMSKDVSAQRL 198

Query: 310 SKISGFA--HHRLKIASDPMNSANRRIDI 336
           S  SG+A  H      S      NRR+++
Sbjct: 199 SA-SGYAEYHPVTPNISAASREKNRRVEV 226


>gi|183221257|ref|YP_001839253.1| OmpA domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911348|ref|YP_001962903.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167776024|gb|ABZ94325.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779679|gb|ABZ97977.1| Putative outer membrane protein, OmpA domain; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 271

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + K+ E LA   E  I+I GH +    R  A D N RLS DRA +A   ++++GV   RI
Sbjct: 183 VDKLAEALAAYPETKINITGHAN----RTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRI 238

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDI 336
             + G          DP + +NRR+++
Sbjct: 239 GTVQGLGSSTPMKNVDPKDGSNRRVEV 265


>gi|194014658|ref|ZP_03053275.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC
           7061]
 gi|194013684|gb|EDW23249.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC
           7061]
          Length = 254

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 214 GVLFET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
           G   ET  T  G+LI+I D   +  FD   +I  P+ + + ++I ++L  +    I I G
Sbjct: 119 GAKLETKLTDEGLLITIED---SIFFDSGRAIIRPQDVPLAKEISKLLVINPARDIVISG 175

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD  P RN     NW LS  RA +   +L++ S ++++  S   GF   +   ++D   
Sbjct: 176 HTDNVPIRNSEFESNWYLSAIRAVNFLSILLENSNLNQENFS-TKGFGEFKPIASNDTAE 234

Query: 329 --SANRRIDILV 338
             S NRR+++L+
Sbjct: 235 GRSKNRRVEVLI 246


>gi|121533592|ref|ZP_01665419.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307583|gb|EAX48498.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 257

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           +GV F  +  G+ I  +D   + +FD   +   P+ + +L  + + L  +   I + GH 
Sbjct: 112 QGVGFTVSERGLTIRFLD---SILFDLGRAELRPDALPLLDAVADALKQTDNYIRVEGHA 168

Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPM 327
           D  P  N A+   NW LS  R+ +  +  + K G+   R+S + G+  +R      S+  
Sbjct: 169 DNLPI-NTAQFPSNWELSAARSIAVTRYFIDKHGLEPRRLSSL-GYGEYRPLYPNTSEAN 226

Query: 328 NSANRRIDILV 338
            + NRR+DI++
Sbjct: 227 RAKNRRVDIVI 237


>gi|83590576|ref|YP_430585.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83573490|gb|ABC20042.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 244

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 199 ISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            S  L   +A+  +K  +F T T  G++IS      + +FD+  +   P ++ +LQKI  
Sbjct: 93  FSQDLQSYLAEQGLKDQVFVTATDQGLIISFT---GSVLFDRGQATLRPASVPILQKIAG 149

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314
            L      I + G TD  P  N ++   NW LS+ RA +  +   + +G+S  R   +  
Sbjct: 150 YLGQVPNYIGVAGSTDDLPI-NTSQFPTNWELSVIRATTVIRYFTETAGLSPSRFVALGY 208

Query: 315 FAHHRLKIASDPMNSA-----NRRIDILV 338
             +H L     P NS      NRR+DI++
Sbjct: 209 GQYHPLF----PNNSEEDRRKNRRVDIII 233



 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W + YAD +T+LMAFF+VM+ ++  D        +A+ Q F     +++    G  ++  
Sbjct: 26  WLLTYADLITLLMAFFIVMYAVSKVDMARYQQLAQALSQIFTSSAGSMVLPELGNGNQVT 85

Query: 89  PPERSSQNKIDL 100
           PP+  +    DL
Sbjct: 86  PPDELAGFSQDL 97


>gi|228984812|ref|ZP_04144984.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775010|gb|EEM23404.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 42  SKMLEKFSDAEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 98  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|297538888|ref|YP_003674657.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297258235|gb|ADI30080.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 272

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 186 MKRKKR-LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           M+R++  +  +   +S+ LS L+ D  V+  + +  R GI I I D   + +F   S+  
Sbjct: 102 MRREREAMTKMGIDLSNKLSPLINDGKVR--VMQNNR-GIRIDIND---SLLFTPGSAEL 155

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303
                 VL +I  ++  +  +I + GHTD     N +   NW LS  RA S  ++L  +G
Sbjct: 156 AAAASTVLSEIAPMIKDNDRLIQVEGHTDNIAIHNDLFYSNWELSAVRASSVVRMLSDTG 215

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           V+E R+S +   +   +   +  +  A NRR+ I++
Sbjct: 216 VAESRLSALGFGSTQPITENNTELGRAKNRRVSIMI 251



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          ++I++K  +DD   N   W + YADF+T+L AFF+VM+ I++ +
Sbjct: 1  MLIRRK-PLDDDDENPDRWLVSYADFITLLFAFFVVMYSISSVN 43


>gi|222054510|ref|YP_002536872.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563799|gb|ACM19771.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 287

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 20/160 (12%)

Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K  K  +DL +K+ S +S G V  + +KG L         ++++D     +FD   +   
Sbjct: 136 KTSKTYEDLLEKMKSEISQGQVTISELKGKLT--------VNMVD---AVLFDSGKAEIK 184

Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTD----ASPFRNIARDNWRLSLDRAYSAYQVLM 300
           PE ++VLQK+ ++L +   + I I GHTD            + NW LS  RA +  + L 
Sbjct: 185 PEGLIVLQKVIDILKNIKDKSIRIEGHTDNDQIGGALAKKYQTNWELSAARAINVTRYLQ 244

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           + G+    +S I+ +   +   A+D     + NRRI+I++
Sbjct: 245 QQGIDPLNLSAIA-YGEFKPVAANDSREGKAKNRRIEIIL 283


>gi|229096214|ref|ZP_04227187.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
 gi|229102326|ref|ZP_04233035.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|229115169|ref|ZP_04244579.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228668309|gb|EEL23741.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228681227|gb|EEL35395.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|228687174|gb|EEL41079.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P ++ EK    M  KKR+ +L KK    L   V +N +
Sbjct: 30  SKMLEKFSDAEQVDAKVMENTIPDITHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 85

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 86  SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIMSQLVGFFQSVPNPIVVEGHT 142

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|189423111|ref|YP_001950288.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189419370|gb|ACD93768.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 271

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           TR G+++S+   +    FD  S++  P    +L  I E +   +  + + GHTD  P   
Sbjct: 143 TRRGLVVSL---KEAGFFDSGSAVIKPAGYQLLNTILEAMTQYSNPLRVEGHTDNIPIST 199

Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDI 336
            +   NW LS+ RA +  + L K+   E      +G+   R     S P   S NRR+DI
Sbjct: 200 PLFPSNWELSVSRATNVLRYLQKNYDVEPGKLSATGYGEFRPTAENSTPEGRSKNRRVDI 259

Query: 337 LV 338
           ++
Sbjct: 260 VL 261


>gi|326392537|ref|ZP_08213903.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991422|gb|EGD50048.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 114

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSG 303
           PE   VL KIG +L      I + G TD  P  N   D NW LS+ RA +  ++L+ + G
Sbjct: 6   PEEKDVLIKIGNMLKTLPNHIRVEGFTDDLPMHNSKFDSNWELSVIRATNVVKILVNEVG 65

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +   RIS + G+  +R  + +D       NRR+DI++
Sbjct: 66  IEPQRISAV-GYGEYRPVVPNDSEEHRRLNRRVDIVI 101


>gi|298507057|gb|ADI85780.1| chemotaxis MotB protein [Geobacter sulfurreducens KN400]
          Length = 266

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           R G+++S+   +    FD  S+I       +L K+ E L+  +  + + GHTD  P  + 
Sbjct: 135 RRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESLSAYSNPVRVEGHTDTMPISSA 191

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDI 336
               NW LS  RA +    L +S   +      +GF  +R  IA +      S NRR+DI
Sbjct: 192 QFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEYR-PIADNNTAEGRSKNRRVDI 250

Query: 337 LVEDRQG 343
           ++   +G
Sbjct: 251 VLLSGEG 257


>gi|224373185|ref|YP_002607557.1| OmpA/MotB [Nautilia profundicola AmH]
 gi|223588582|gb|ACM92318.1| OmpA/MotB [Nautilia profundicola AmH]
          Length = 258

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 255 IGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I E L  + E I I+G+TD    P  +   DNW LS  RA S  ++L+K GV+  ++S  
Sbjct: 152 IKEYLPKNIE-IQIKGYTDNQPPPPTSPYADNWELSAARALSVLKILIKDGVNPKQLSAA 210

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDI 336
           +   +H +   + P   A NRR++I
Sbjct: 211 AYGEYHPIAANATPEGRAKNRRVEI 235


>gi|24373103|ref|NP_717146.1| flagellar motor protein MotB [Shewanella oneidensis MR-1]
 gi|24347292|gb|AAN54590.1|AE015599_2 sodium-driven polar flagellar protein PomB [Shewanella oneidensis
           MR-1]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 48/323 (14%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           P     W   +AD M++LM FF+++   +  D      + +Y     K +  + K  F  
Sbjct: 8   PPGAPLWLATFADLMSLLMCFFVLLLSFSEMD------VMKY-----KQIAGSMKYAF-- 54

Query: 87  QNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQ------KKQYQRLENNIFYLSNSQQ 139
                   QNK+++  I +  +  +++ + G  +        +Q   +   +  L   + 
Sbjct: 55  ------GVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGED 108

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                      S++G         E S   +E          K  A   + ++    KK+
Sbjct: 109 DSSGGTQQQNGSQRGG--------EASATAQETE-----DAVKAEAAAAQDKINQQVKKM 155

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L+  +AD  ++    E+    I+I I   R    F   S    P    V++ +GE+L
Sbjct: 156 AQELNQEIADGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVGELL 209

Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +I++ G+TD     + +   NW LS  RA +   VL++    + +  K+ G A +
Sbjct: 210 KDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRMKVVGMASN 269

Query: 319 RLKIASD-PMNSA-NRRIDILVE 339
              + +D P N A NRR++I +E
Sbjct: 270 NPIVPNDSPDNRARNRRVEIAIE 292


>gi|221635437|ref|YP_002523313.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium
           roseum DSM 5159]
 gi|221157647|gb|ACM06765.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium
           roseum DSM 5159]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 156 DLCKSTDLEKSINKEENYFL---PPLSKEKILAMKRKKRLQ---DLAKKISSTLSGLVAD 209
           DL K   +  S+    N  +   PP  +  +  +++  R      +  +++S  + L  D
Sbjct: 43  DLAKFRQVASSLRAAFNLDVLTAPPPGQSMVTPLEQDPRFNAYLSVRAQVASLFTRLGLD 102

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
              +G   E T  GI+I + D     +F    +   PE   VL  I  ++      I + 
Sbjct: 103 R--QGAEVELTSEGIVIHLSDAI---LFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVE 157

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD++P    +  DNW LS  RA +  + L   +G+   R+S  +G+   R + +++ +
Sbjct: 158 GHTDSTPPPPGSYPDNWELSAMRAVNTVRYLTDVAGLPPQRLSA-AGYGEFRPRASNETV 216

Query: 328 NS--ANRRIDILV 338
                NRR+DI++
Sbjct: 217 EGRRKNRRVDIVI 229



 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          NL  W I YAD +T+L+ FF+VM+ I+  D
Sbjct: 14 NLERWLITYADLITLLLIFFVVMYSISQAD 43


>gi|150390475|ref|YP_001320524.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950337|gb|ABR48865.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)

Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           I + GHTD  P R  ++   NW LS+ RA +  + L++ +GV+ +R S  +G+  +R   
Sbjct: 157 IRVEGHTDTDPLRVTSKYETNWELSVARASNVVRFLIEDAGVTPERFSA-AGYGEYRPLA 215

Query: 323 ASDPMN--SANRRIDILV 338
           A+D +   + NRR+D+++
Sbjct: 216 ANDTIENKAINRRVDVVI 233


>gi|163758837|ref|ZP_02165924.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43]
 gi|162284127|gb|EDQ34411.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43]
          Length = 343

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+++GV  +R+   +GF   +  I
Sbjct: 264 VLRVDGHTDNVPLSGTGRYADNWELSTARATSVVKYLIENGVPANRLVA-AGFGEFQ-PI 321

Query: 323 A---SDPMNSANRRIDILVEDR 341
           A   SD   + NRRI++ + +R
Sbjct: 322 ADGDSDEARATNRRIELKLTER 343


>gi|296124309|ref|YP_003632087.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016649|gb|ADG69888.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
          Length = 275

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--AHSTEV-ISIRGHTDASPF-RNIARD----NWRL 287
           +F   S    PE   +LQ+   ++  A S  + + + GHTD  P  R    D    NW L
Sbjct: 147 LFASGSDEIRPEAYALLQEFARIMNSADSKHLKVLVVGHTDDKPISRKAVADKHPTNWHL 206

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILV 338
           S DRA S    L KSG++E R+          L   SD  N   NRR++I V
Sbjct: 207 STDRANSVVLALKKSGLAEQRMGAAGYSLFQPLAPNSDDKNRQKNRRVEIFV 258


>gi|293605836|ref|ZP_06688207.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553]
 gi|292815749|gb|EFF74859.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553]
          Length = 361

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293
           +F    +   P  + V++++  +L  +   +S+ GH+D  P   R  A  NW LS  RA 
Sbjct: 187 LFPSGQATLSPSGLDVIKRLAGILNKNAYQVSVEGHSDPVPIQTRQFA-SNWELSSSRAT 245

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SANRRIDILVE 339
           S  + L+  GV+ +R+  + G+A  R ++    P   +ANRR++++++
Sbjct: 246 SVLRELVHDGVAPERLRAV-GYAETRPIETNDTPAGRAANRRVELIMD 292


>gi|186470892|ref|YP_001862210.1| DotU family type IV/VI secretion system protein [Burkholderia
           phymatum STM815]
 gi|184197201|gb|ACC75164.1| type IV / VI secretion system protein, DotU family [Burkholderia
           phymatum STM815]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++  L+G +AD +  G +  T       + +  R   +F+   S   P    ++  IG+ 
Sbjct: 269 LAGRLAGHLADEVNAGTV--TLAENAQHTTLSLRLEGIFEAGQSSVNPWVKPLITTIGQE 326

Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFA 316
           +A +   + + GHTD+ PF ++ R  N  LS  RA    Q+L+ +GV+ DRI S   G A
Sbjct: 327 VAKTPGRVLVTGHTDSQPFSHMQRSSNLALSDARAQEVAQILVSAGVATDRIDSTGKGNA 386

Query: 317 HHRLKIASDPMNSANRRIDILV 338
                 A+      NRR++I V
Sbjct: 387 EPAADNATPQGRLRNRRVEITV 408


>gi|54294667|ref|YP_127082.1| flagellar motor protein MotD [Legionella pneumophila str. Lens]
 gi|53754499|emb|CAH15983.1| hypothetical protein lpl1744 [Legionella pneumophila str. Lens]
          Length = 273

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           ID +   +FD  S+   PE ++ L K+ E + +    + + G+TD  P        NW L
Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S  RA +  ++L   G++  RI  ++G+          ++   S NRR++IL+
Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232



 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ +    K++ +
Sbjct: 23 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSE 57


>gi|228926763|ref|ZP_04089831.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832876|gb|EEM78445.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 227

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ + L     +N +
Sbjct: 44  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKAYLD----NNGI 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N  
Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 217 KNRRVVIYIKE 227


>gi|162456876|ref|YP_001619243.1| hypothetical protein sce8593 [Sorangium cellulosum 'So ce 56']
 gi|161167458|emb|CAN98763.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 210

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 22/171 (12%)

Query: 184 LAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           LA +R  R  + A+   + S L+G +A+  +        R GI       R + +F+ +S
Sbjct: 49  LAAERATRATERARLEALESALAGPLAEGRIT---LTEGRIGI-------RGSILFELNS 98

Query: 242 SIPLPETIVVLQKIGE----VLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYS 294
           +   P  I +L+ + +     L H  E+I + G TD  P  + +R   DNW LS  RA +
Sbjct: 99  AELQPAGIALLRALADPLKAYLEHHDELIMVSGFTDDRPLTSSSRGYADNWELSAQRALT 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
             + L  +GV +  +   +GF        +D     + NRR++I    R+G
Sbjct: 159 VTRALAAAGVPDTSLFA-AGFGERHPVAPNDTSENRAKNRRVEISPIPRRG 208


>gi|182418302|ref|ZP_02949597.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237666437|ref|ZP_04526422.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377684|gb|EDT75228.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237657636|gb|EEP55191.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWR 286
           ++  R+  +F+   +  +  +  +L KI  +++     I I GHTD  P   +I +DNW 
Sbjct: 125 VLQLRDNILFESGKADLIDGSSEILDKINTLISTLPNSIVIEGHTDNVPISTSIYKDNWD 184

Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           LS  RA +  +   +  G    R S  +G+  +R K+  ++D   + NRR++IL+
Sbjct: 185 LSTARASNVLRYFTQLKGQDPTRFSA-AGYGEYRPKVDNSTDENRAQNRRVNILI 238


>gi|283851028|ref|ZP_06368313.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283573674|gb|EFC21649.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 263

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           SWK+ YADF+T +MAFFL++W++ +     K+ +   F               D+  P +
Sbjct: 27  SWKVAYADFVTAMMAFFLLLWLVVSLKPQRKQELSLVFQ--------------DKNVPSK 72

Query: 92  RSSQN--KIDLSIDEHITKNSVDLKIGSTNQKK 122
              QN  K+   I     K S + K+   N+ K
Sbjct: 73  EKVQNLEKVPTFISPDAIKGSPEFKLSQENKLK 105


>gi|52842007|ref|YP_095806.1| flagellar motor protein MotD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629118|gb|AAU27859.1| flagellar motor protein MotB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 273

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           ID +   +FD  S+   PE ++ L K+ E + +    + + G+TD  P        NW L
Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S  RA +  ++L   G++  RI  ++G+          ++   S NRR++IL+
Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88
           W + YADF+T+L AFF+VM+ I++ +    K++ +     FN   +N  T S     +  
Sbjct: 23  WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 81

Query: 89  PPERSSQNKIDLSIDE 104
           P E+ ++      +DE
Sbjct: 82  PEEKKTKGTFKDGLDE 97


>gi|297180147|gb|ADI16369.1| flagellar motor protein [uncultured bacterium HF130_12L15]
          Length = 343

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           L E I+ LQK  E+      V+ + GHTD  P     R  DNW LS  RA S  + L+  
Sbjct: 246 LAEAIIDLQK--EIPPEINWVLRVDGHTDNVPLSGTGRYRDNWELSSARATSVVKYLISQ 303

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           GV   R+   +GF   +  +  D  ++   NRRI++ + +R
Sbjct: 304 GVPASRLVA-AGFGEFQPLVEGDTPDARNKNRRIELKLTER 343


>gi|254517026|ref|ZP_05129084.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
 gi|219674531|gb|EED30899.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
          Length = 270

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F   S   L  +I +L+++ + L      + ++GHTD  P RN     NW LS  RA +
Sbjct: 154 LFPSGSRSLLASSIPMLRRLADTLKALPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAA 213

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
             +V  + GV   ++S + GF  +R     AS+   + NRR+ +LV
Sbjct: 214 IARVFEEEGVDPVKLSAV-GFGPNRPIADNASEEGRAENRRVVVLV 258


>gi|171060724|ref|YP_001793073.1| hypothetical protein Lcho_4056 [Leptothrix cholodnii SP-6]
 gi|170778169|gb|ACB36308.1| type IV / VI secretion system protein, DotU family [Leptothrix
           cholodnii SP-6]
          Length = 460

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284
           S++  R   +F+  S+        +L+++ + LA     + + GHTD+ P R+ AR   N
Sbjct: 320 SVVTLRGDGLFEPGSATLAAPKEALLRRVADALAQFGGAVLVTGHTDSQPIRS-ARFPSN 378

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           W LS +RA +  ++L+   V+ +R+ +  G A     +A+D     + NRR++I
Sbjct: 379 WHLSQERAGAVRELLVSQQVATERV-RAEGRADGEPVVANDSAGNRALNRRVEI 431


>gi|148359324|ref|YP_001250531.1| flagellar motor protein MotB [Legionella pneumophila str. Corby]
 gi|296107371|ref|YP_003619071.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148281097|gb|ABQ55185.1| flagellar motor protein MotB [Legionella pneumophila str. Corby]
 gi|295649272|gb|ADG25119.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 267

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           ID +   +FD  S+   PE ++ L K+ E + +    + + G+TD  P        NW L
Sbjct: 115 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 174

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S  RA +  ++L   G++  RI  ++G+          ++   S NRR++IL+
Sbjct: 175 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 226



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88
           W + YADF+T+L AFF+VM+ I++ +    K++ +     FN   +N  T S     +  
Sbjct: 17  WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 75

Query: 89  PPERSSQNKIDLSIDE 104
           P E+ ++      +DE
Sbjct: 76  PEEKKTKGTFKDGLDE 91


>gi|78063205|ref|YP_373113.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77971090|gb|ABB12469.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP++  VL +I + L+ H+T  I + GHTD+ P  N   + NW LS  RA 
Sbjct: 119 LFNVGDARLLPDSSPVLNQIAQALSDHATGDILVEGHTDSVPIANAKYESNWELSSARAG 178

Query: 294 SAYQVLMKSGVSEDRISKIS 313
           S  + L + GV+  R++ I 
Sbjct: 179 SVVRYLTERGVAPHRLAAIG 198


>gi|54297693|ref|YP_124062.1| flagellar motor protein MotD [Legionella pneumophila str. Paris]
 gi|53751478|emb|CAH12896.1| hypothetical protein lpp1744 [Legionella pneumophila str. Paris]
          Length = 273

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           ID +   +FD  S+   PE ++ L K+ E + +    + + G+TD  P        NW L
Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S  RA +  ++L   G++  RI  ++G+          ++   S NRR++IL+
Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88
           W + YADF+T+L AFF+VM+ I++ +    K++ +     FN   +N  T S     +  
Sbjct: 23  WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNIKD-G 81

Query: 89  PPERSSQNKIDLSIDE 104
           P E+ ++      +DE
Sbjct: 82  PEEKKTKGTFKDGLDE 97


>gi|307610480|emb|CBX00052.1| hypothetical protein LPW_18071 [Legionella pneumophila 130b]
          Length = 267

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           ID +   +FD  S+   PE ++ L K+ E + +    + + G+TD  P        NW L
Sbjct: 115 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 174

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
           S  RA +  ++L   G++  RI  ++G+          ++   S NRR++IL+
Sbjct: 175 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 226



 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88
           W + YADF+T+L AFF+VM+ I++ +    K++ +     FN   +N  T S     +  
Sbjct: 17  WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 75

Query: 89  PPERSSQNKIDLSIDE 104
           P E+ ++      +DE
Sbjct: 76  PEEKKTKGTFKDGLDE 91


>gi|228914307|ref|ZP_04077922.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845301|gb|EEM90337.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 227

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           +P +S EK    M  KKR+ +L KK    L   V +N +  V      TG+ + I+D   
Sbjct: 65  IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 119

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
             +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  RA
Sbjct: 120 --IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARA 177

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            +    L++    +D+     G+A  +  + +D P N   NRR+ I +++
Sbjct: 178 ANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYIKE 227


>gi|242280812|ref|YP_002992941.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123706|gb|ACS81402.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 169 KEENYFLPP--LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +E+N  L P  L ++++      KRL  L  +I + L    A     GV  +  + G+++
Sbjct: 71  EEDNLALTPSDLKRKEVKMDSNDKRLLGLVLRIKALLDEDDATRKSSGV--KADQDGVVV 128

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285
           S     +  +F+  S+   PE   VL K+  +L      + +RGHTD S   +     NW
Sbjct: 129 ST---DSATLFEPGSATLRPEAHKVLDKVISILKDHNYNLVVRGHTDNSEIHSRKFPTNW 185

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDIL 337
            LS  RA SA + +++ G    +  K  G+A  +  + +D P N S NRR++  
Sbjct: 186 ELSSARAASALRYIVEQGGIAPKRLKAVGYADTQPLVKNDSPANKSKNRRLEFF 239


>gi|317407354|gb|EFV87320.1| OmpA-family protein [Achromobacter xylosoxidans C54]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 6/108 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293
           +F    +   P  + V++++  +L  +   +S+ GH+D  P   R  A  NW LS  RA 
Sbjct: 190 LFPSGQATLSPSGLDVIKRLAAILNKNDYQVSVEGHSDPVPIQTRQFA-SNWELSSSRAT 248

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVE 339
           S  + L++ GV+  R+  + G+A  R   ++D P   +ANRR++++++
Sbjct: 249 SVLRELVRDGVAGSRLRAV-GYAETRPIESNDTPAGRAANRRVELIMD 295


>gi|153008534|ref|YP_001369749.1| hypothetical protein Oant_1203 [Ochrobactrum anthropi ATCC 49188]
 gi|151560422|gb|ABS13920.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLTGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322

Query: 323 ASDPMN--SANRRIDILVEDR 341
           ASD  +  S NRRI++ + +R
Sbjct: 323 ASDTADARSKNRRIELKLTER 343


>gi|310659033|ref|YP_003936754.1| motility protein b [Clostridium sticklandii DSM 519]
 gi|308825811|emb|CBH21849.1| motility protein B [Clostridium sticklandii]
          Length = 216

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 17/164 (10%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           ++L M+  ++L+D  ++       L  + + + V       G+L+   D     +FD  S
Sbjct: 50  EVLEMQNFQKLEDTIQEY------LDKNQLSESVTVLEEEAGLLLRFQD---NILFDSGS 100

Query: 242 SIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY 296
           +   PE++ ++  I ++L       + ISI GHTD  P  N  R   NW LS+ R+ +  
Sbjct: 101 ADLKPESLEIMSYIAQLLNAEDFKDKFISIEGHTDDVPM-NSPRYPSNWELSVGRSSNVV 159

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           + L+++   + +    SG++ +     +D     + NRR+DIL+
Sbjct: 160 RFLVENNNMDPKRISASGYSEYHPVAQNDTAENRAKNRRVDILI 203


>gi|91793918|ref|YP_563569.1| flagellar motor protein MotB [Shewanella denitrificans OS217]
 gi|91715920|gb|ABE55846.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 318

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ + +  KK++  L+  + D  ++    E+    I+I I   R    F   S    P+ 
Sbjct: 147 QENINEQVKKMAEQLNEEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPKF 200

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSE 306
             V++ IG +L     +I++ GHTD     N +   NW LS  RA + A++ +   G  E
Sbjct: 201 KPVIRSIGSLLKDVPGIITVAGHTDGMHISNELYSSNWDLSSARAVAVAHEFMRVPGFDE 260

Query: 307 DRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
            R+ K+ G A +   ++  S    S NRR++I +E
Sbjct: 261 TRM-KVVGMASNDQLVSNESSENRSQNRRVEITIE 294


>gi|206970743|ref|ZP_03231695.1| putative chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218233445|ref|YP_002366413.1| flagellar motor protein MotS [Bacillus cereus B4264]
 gi|218896660|ref|YP_002445071.1| putative chemotaxis protein MotB [Bacillus cereus G9842]
 gi|296502310|ref|YP_003664010.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171]
 gi|206734379|gb|EDZ51549.1| putative chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218161402|gb|ACK61394.1| putative chemotaxis protein MotB [Bacillus cereus B4264]
 gi|218544664|gb|ACK97058.1| putative chemotaxis protein MotB [Bacillus cereus G9842]
 gi|296323362|gb|ADH06290.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           +P +S EK    M  KKR+ +L KK    L   V +N +  V      TG+ + I+D   
Sbjct: 63  IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 117

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
             +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  RA
Sbjct: 118 --IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARA 175

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            +    L++    +D+     G+A  +  + +D P N   NRR+ I +++
Sbjct: 176 ANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKNRRVVIYIKE 225


>gi|75760652|ref|ZP_00740680.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228900309|ref|ZP_04064539.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
 gi|228907361|ref|ZP_04071219.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|228920439|ref|ZP_04083784.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228938842|ref|ZP_04101442.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228952108|ref|ZP_04114203.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228958007|ref|ZP_04119744.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228971723|ref|ZP_04132344.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978332|ref|ZP_04138709.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|229043482|ref|ZP_04191192.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|229069280|ref|ZP_04202570.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|229078910|ref|ZP_04211462.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|229109185|ref|ZP_04238784.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|229144340|ref|ZP_04272746.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|229149929|ref|ZP_04278157.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|229178137|ref|ZP_04305508.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|229189825|ref|ZP_04316836.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|74491866|gb|EAO55054.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228593633|gb|EEK51441.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228605267|gb|EEK62717.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|228633610|gb|EEK90211.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|228639127|gb|EEK95551.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|228674195|gb|EEL29440.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|228704324|gb|EEL56758.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228713767|gb|EEL65652.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|228725860|gb|EEL77107.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|228781349|gb|EEM29550.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228787813|gb|EEM35771.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228801714|gb|EEM48594.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807640|gb|EEM54164.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228820691|gb|EEM66716.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228839069|gb|EEM84365.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852222|gb|EEM97018.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|228859344|gb|EEN03774.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           +P +S EK    M  KKR+ +L KK    L   V +N +  V      TG+ + I+D   
Sbjct: 64  IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 118

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
             +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  RA
Sbjct: 119 --IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARA 176

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            +    L++    +D+     G+A  +  + +D P N   NRR+ I +++
Sbjct: 177 ANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKNRRVVIYIKE 226


>gi|302338088|ref|YP_003803294.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635273|gb|ADK80700.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 8/105 (7%)

Query: 240 SSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY 296
           S+ + + E+   LQK+  +L +       I GHTD++P         NW LS DRA +  
Sbjct: 134 SAEVQIEESRETLQKLSALLRSMPGRKFRIEGHTDSTPTDPTGPWPTNWELSTDRATNVL 193

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
             L+  GV+E++  +++GFA   + +AS+        NRR+DI++
Sbjct: 194 HYLVDFGVTENQF-QVAGFA-DTVPLASESTEEGKAYNRRVDIII 236


>gi|148265913|ref|YP_001232619.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399413|gb|ABQ28046.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 20/160 (12%)

Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K  K  +DL +K+ S +S G V  + +KG L         ++++D     +FD   +   
Sbjct: 136 KTSKTYEDLLEKMKSEISQGQVTISELKGKLT--------VNMVD---AVLFDSGKAEVK 184

Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTD-ASPFRNIARD---NWRLSLDRAYSAYQVLM 300
           P+ +VVLQK+ ++L +   + I I GHTD  S    +A+    NW LS  RA +  + L 
Sbjct: 185 PDGLVVLQKVIDILKNIKDKSIRIEGHTDNVSIVGALAKKYPTNWELSAARAINVTRYLQ 244

Query: 301 KSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
           + G+    ++ I+ +   +    +D P   A NRRI+I++
Sbjct: 245 QQGIDPTNLAAIA-YGEFKPVAGNDTPEGKAKNRRIEIIL 283


>gi|82702444|ref|YP_412010.1| flagellar motor protein MotD [Nitrosospira multiformis ATCC 25196]
 gi|82410509|gb|ABB74618.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 288

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSE 306
           VL+ + +VL ++   I + GHTD+ P   I  D    NW LS  RA S  ++L+ SGV  
Sbjct: 160 VLEAVAQVLKNNDYPIQVEGHTDSIP---IVTDKFPSNWELSAVRASSVVRLLIGSGVEA 216

Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            R++ + G+  +R   ++D  +  + NRR+ I++
Sbjct: 217 ARLTAV-GYGENRPVDSNDTEDGRTRNRRVTIMI 249


>gi|209883793|ref|YP_002287650.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
 gi|209871989|gb|ACI91785.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
          Length = 464

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   ++  P+++ +L ++ EV L  ST  I I GHTD++     A  N  LS  RA S 
Sbjct: 363 FETGKAVIDPDSVGLLDRLVEVVLRCSTSQIEITGHTDSN---GDAESNLALSNRRAQSV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVE 339
              L+K+GV  +RI+ I GF   R  IA   ++   + NRRI+ LV+
Sbjct: 420 ADYLIKAGVPSERITAI-GFGSGR-PIAPNDTEEGKAQNRRIEFLVK 464


>gi|302387785|ref|YP_003823607.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1]
 gi|302198413|gb|ADL05984.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1]
          Length = 262

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
          D  P  LGSW   Y D +T+L+ FF++++ +++ D    K + Q FNP
Sbjct: 5  DKKPEELGSWMDTYGDMVTLLLCFFVLLYSMSSVDQSKWKLLVQSFNP 52


>gi|157692040|ref|YP_001486502.1| flagellar motor protein MotB [Bacillus pumilus SAFR-032]
 gi|157680798|gb|ABV61942.1| flagellar motor protein B [Bacillus pumilus SAFR-032]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 214 GVLFET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
           G   ET  T  G+LI+I D   +  FD   ++  P+ + + ++I ++L  +    I I G
Sbjct: 119 GAKLETKLTDEGLLITIED---SIFFDSGRAVIRPQDVPLAKEISKLLVINPARDIVISG 175

Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD  P RN     NW LS  RA +   +L++ S ++++  S   GF   +   ++D   
Sbjct: 176 HTDNVPIRNSDFESNWYLSAIRAVNFLSILLENSNLNQENFS-TKGFGEFKPIASNDTAE 234

Query: 329 --SANRRIDILV 338
             S NRR+++L+
Sbjct: 235 GRSKNRRVEVLI 246


>gi|13473358|ref|NP_104925.1| hypothetical protein mlr3926 [Mesorhizobium loti MAFF303099]
 gi|14024107|dbj|BAB50711.1| mlr3926 [Mesorhizobium loti MAFF303099]
          Length = 343

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           L + I+ LQK  E+      V+ + GHTD  P     R  DNW LS  R+ S  + L+++
Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRFRDNWELSTARSTSVVKFLIEN 303

Query: 303 GVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341
           GV  +R+   +GF   + L  A +D   + NRRI++ + +R
Sbjct: 304 GVPANRLVA-AGFGEFQPLDPADTDEARNKNRRIELKLTER 343


>gi|315225528|ref|ZP_07867338.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287]
 gi|314944472|gb|EFS96511.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287]
          Length = 456

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD + +   P++  VL +I +VL  +     SI G+TD S  R+    N +LS DRA
Sbjct: 351 TILFDVNKATIKPQSATVLNQIVDVLNQYKNAKFSIEGYTDISGKRD---KNQKLSEDRA 407

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
           YS    L++ G+ E R++   GF   +  IAS+        NRR++I
Sbjct: 408 YSVKAYLIEKGIDEGRLT-AKGFGPDK-PIASNKTKKGRELNRRVEI 452


>gi|284989545|ref|YP_003408099.1| OmpA/MotB domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284062790|gb|ADB73728.1| OmpA/MotB domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 217 FETTRTGILISII-DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           FE    G+++ I+ DQ    +FD   ++  PE   +L  I   L      + + GH +  
Sbjct: 155 FEIDERGLVVHIVADQV---LFDAEQAVLRPEGRQILDAIAPTLRGLPNSLGVEGHANHL 211

Query: 276 PFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SAN 331
           P     I   NW LS  RA +  + L   GV   R+   +G++  R L   +DP + S N
Sbjct: 212 PVTPGGIWPSNWELSAYRATTVVRYLTTGGVPGARMVA-NGYSDTRPLVPPTDPNSISVN 270

Query: 332 RRIDILV 338
           RR+D++V
Sbjct: 271 RRVDVVV 277


>gi|58038715|ref|YP_190679.1| hypothetical protein GOX0240 [Gluconobacter oxydans 621H]
 gi|58001129|gb|AAW60023.1| Flagellar motor protein [Gluconobacter oxydans 621H]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323
           ++ + GH D  P  +    NW LS +RA +  ++L+  GV    ++  +GFA ++ L  A
Sbjct: 256 ILRVDGHADRQPIHSAFPSNWELSSERAITVVKLLIAEGVDPHHLAA-TGFADYQPLDAA 314

Query: 324 SDPMNSA-NRRIDILVEDR 341
           S P   A NRRI+  + DR
Sbjct: 315 STPAAYARNRRIEFRLTDR 333


>gi|86134567|ref|ZP_01053149.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85821430|gb|EAQ42577.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 17/127 (13%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEV-ISIRGHTDASPF- 277
           +T + ISI D+    +  KS S  + E    VL KI +V+    ++ + I GHTD +P  
Sbjct: 149 KTVVFISISDK----LLFKSGSYNVTENAYTVLDKIAKVIKDQPKMEVMIEGHTDTTPIK 204

Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA-----N 331
           R++ +DNW LS  RA S  ++L  K GV  +R+  I+      + +A  P ++A     N
Sbjct: 205 RDLIQDNWDLSALRATSITRILQYKFGVKPERL--IAAGRSQYIPLA--PNDTAENKAKN 260

Query: 332 RRIDILV 338
           RR  I++
Sbjct: 261 RRTKIII 267


>gi|163755499|ref|ZP_02162618.1| putative flagellar motor protein MotB [Kordia algicida OT-1]
 gi|161324412|gb|EDP95742.1| putative flagellar motor protein MotB [Kordia algicida OT-1]
          Length = 286

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 34/206 (16%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           ++ +E+ + SL  +S K KDL K T L+ ++NK+++  L  +S     ++K+   + D  
Sbjct: 88  TKGAENLEKSL--ESMKEKDL-KITRLQDALNKKDSVTLAIVS-----SLKKAVGIDDPD 139

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            +I          N+ KGV+F        ISI D+    +F   S     +  VVL K+ 
Sbjct: 140 IEI----------NVEKGVVF--------ISIADKL---LFKSGSYNVTDKAKVVLGKVA 178

Query: 257 EVLAHSTEV-ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +V+         + GHTD  P+ + +  DNW LS+ R+ S  +VL + GV+  ++   +G
Sbjct: 179 KVVNSKPNFECMVEGHTDNVPYNKGVLIDNWDLSVKRSTSIIRVLQELGVNPGQLIA-AG 237

Query: 315 FAHHRLKIASD-PMNSA-NRRIDILV 338
            +++   + +D P N A NRR  I+V
Sbjct: 238 RSYYVPLVENDTPENRATNRRTRIVV 263


>gi|163939534|ref|YP_001644418.1| flagellar motor protein MotS [Bacillus weihenstephanensis KBAB4]
 gi|163861731|gb|ABY42790.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 227

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK       KKR+ +L KK    L   V +N V 
Sbjct: 45  KMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVSKKRMDELYKK----LKAYVDNNGVS 100

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TGI I I+D     +FD   +   PE   V+ ++          I + GHTD
Sbjct: 101 QVNVYREDTGISIVIVDNL---IFDTGDANVKPEAKEVISQLVGFFQSVPNPIVVEGHTD 157

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
           + P  N     NW LS  RA +    L++    +D+     G+A  +   ++D P N   
Sbjct: 158 SRPIHNENFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVASNDSPQNWEK 217

Query: 331 NRRIDILVED 340
           NRR+ I +++
Sbjct: 218 NRRVVIYIKE 227


>gi|254428132|ref|ZP_05041839.1| OmpA family protein [Alcanivorax sp. DG881]
 gi|196194301|gb|EDX89260.1| OmpA family protein [Alcanivorax sp. DG881]
          Length = 212

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
           L  ++ KRL +  ++++  L   +AD +  G V F   R GI  S++ Q N+        
Sbjct: 47  LEQEKAKRLAEEQRRMA--LEEALADPLASGRVTFHNGRIGISGSVLFQLNSDQLQPEGE 104

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR--DNWRLSLDRAYSAYQVL 299
             L + +  LQ     L+   +++ + G TD  P  R   R  DNW LS  RA +  + L
Sbjct: 105 ALLSDLVKPLQVF---LSQHDDMLMVSGFTDDLPINRGNGRYADNWGLSAQRALTVTRTL 161

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
           ++ G+  D++   + F  ++    +D  +S   NRR+++    RQ
Sbjct: 162 IEQGMPADQVFA-AAFGDNQPVAPNDDADSRARNRRVELTTVPRQ 205


>gi|113971062|ref|YP_734855.1| flagellar motor protein MotB [Shewanella sp. MR-4]
 gi|114048292|ref|YP_738842.1| flagellar motor protein MotB [Shewanella sp. MR-7]
 gi|117921338|ref|YP_870530.1| flagellar motor protein MotB [Shewanella sp. ANA-3]
 gi|113885746|gb|ABI39798.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
 gi|113889734|gb|ABI43785.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
 gi|117613670|gb|ABK49124.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 306

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V++ +G
Sbjct: 153 KKMAQELNNEITDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVG 206

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E+L     +I++ G+TD     + +   NW LS  RA +   VL++    + +  K+ G 
Sbjct: 207 ELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRMKVVGM 266

Query: 316 AHHRLKIASD-PMNSA-NRRIDILVE 339
           A +   + +D P N A NRR++I +E
Sbjct: 267 ASNNPIVPNDSPENRARNRRVEIAIE 292


>gi|320106352|ref|YP_004181942.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319924873|gb|ADV81948.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 118/327 (36%), Gaps = 87/327 (26%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK------AIEQYFNPFGKNLMTA 79
            P+    W + YADF+T+L AFF+V++    +  D KK      AI+  F          
Sbjct: 8   APHGHERWLVSYADFITLLFAFFVVLFA--GSRGDAKKQQLLAVAIQTAF---------- 55

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           ++G FD                   H    ++    G+  +             +     
Sbjct: 56  AQGAFDA------------------HSKTPALAPSAGAMGKPTP--------IAMPTPMT 89

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            E        D ++  D      L +    ++N  LPPL  +     KR           
Sbjct: 90  PEAAARKEAADKKRIYD-----ALAQMAVPQKNQNLPPLGAKPPSPEKR----------- 133

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                       +  V F +   G+++S+ D      F+  S+    + I VL++I   L
Sbjct: 134 ---------GTAISAVSFRSEPEGLVLSLQDAG---FFNSGSAALRADAIPVLERIAASL 181

Query: 260 AHSTEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
                 + + GHTD     N+A        NW LS  RA +  +VL+   +       ++
Sbjct: 182 PMGP--LRVEGHTD-----NVAIHTALYASNWELSTARANAIARVLLARSLVNPASLAVA 234

Query: 314 GFA--HHRLKIASDPMNSANRRIDILV 338
           G+A  H     +++   + NRR+DI++
Sbjct: 235 GYAEFHPISSNSTEEGRAKNRRVDIVL 261


>gi|229062194|ref|ZP_04199517.1| OmpA/MotB domain protein [Bacillus cereus AH603]
 gi|229169237|ref|ZP_04296950.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228614220|gb|EEK71332.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228717088|gb|EEL68766.1| OmpA/MotB domain protein [Bacillus cereus AH603]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334
           N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D P   A NRR+
Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPNDTPEGKAKNRRV 221

Query: 335 DILV 338
           ++ +
Sbjct: 222 EVFI 225


>gi|78484704|ref|YP_390629.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78362990|gb|ABB40955.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 266 ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322
           + I GHTDA+P    A  + N+ LS  RAY+   VL + SG+ E   S I+G+      +
Sbjct: 157 VRIEGHTDATPLAKTALYQSNFELSTFRAYAIMNVLQIYSGLPESLFS-IAGYGSFH-PV 214

Query: 323 ASDPMNSANRRIDILV 338
             +P +S NRR++I +
Sbjct: 215 TRNPYDSKNRRVEIYL 230


>gi|54308004|ref|YP_129024.1| flagellar motor protein MotB [Photobacterium profundum SS9]
 gi|46912430|emb|CAG19222.1| putative sodium-driven polar flagellar protein MotB [Photobacterium
           profundum SS9]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 81/336 (24%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---S 80
            P     W   +AD  T+LM FF+++   +  D    K I       FG +N++      
Sbjct: 8   CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67

Query: 81  KG--IFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           KG  +  ++  P R     I++ + + I  T+ ++D   G +++                
Sbjct: 68  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRA--------------- 112

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQ 193
                       RD+ K     KS D+   +N+     +   S+E++L + +K   + +Q
Sbjct: 113 --------GGTKRDAGKLTG-GKSADVATQMNQNNQSEMSE-SQEQLLEVMQKALDREIQ 162

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D A ++         +N  + V+      G             F   S+   P+   +++
Sbjct: 163 DGAIEV---------ENFGQQVVIRIKEKG------------AFPAGSAFLQPKFRPLVR 201

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +I +++     +I I GHTD       + R NW LS  RA S  Q           + ++
Sbjct: 202 QIADLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEQV 251

Query: 313 SGFAHHRLKIA----SDPMNS--------ANRRIDI 336
            GF H RL++     + P+NS         NRR++I
Sbjct: 252 KGFDHKRLRVVGLADTAPLNSNKTAEERKVNRRVEI 287


>gi|90410908|ref|ZP_01218922.1| flagellar motor protein [Photobacterium profundum 3TCK]
 gi|90328121|gb|EAS44432.1| flagellar motor protein [Photobacterium profundum 3TCK]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 81/336 (24%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---S 80
            P     W   +AD  T+LM FF+++   +  D    K I       FG +N++      
Sbjct: 8   CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67

Query: 81  KG--IFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           KG  +  ++  P R     I++ + + I  T+ ++D   G +++    +R   +   L+ 
Sbjct: 68  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKR---DAGKLTG 124

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQ 193
            Q                     S D+   +N+     +   S+E++L + +K   + +Q
Sbjct: 125 GQ---------------------SADVATQMNQNNQSEMSE-SQEQLLEVMQKALDREIQ 162

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D A ++         +N  + V+      G             F   S+   P+   +++
Sbjct: 163 DGAIEV---------ENFGQQVVIRIKEKG------------AFPAGSAFLQPKFRPLVR 201

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +I +++     +I I GHTD       + R NW LS  RA S  Q           + ++
Sbjct: 202 QIADLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEQV 251

Query: 313 SGFAHHRLKIA----SDPMNS--------ANRRIDI 336
            GF H RL++     + P+NS         NRR++I
Sbjct: 252 KGFDHKRLRVVGLADTAPLNSNKTAEERKVNRRVEI 287


>gi|229135343|ref|ZP_04264134.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
 gi|228648118|gb|EEL04162.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMLTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA 330
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D P   A
Sbjct: 159 TVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPNDTPEGKA 217

Query: 331 -NRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|332879143|ref|ZP_08446844.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682943|gb|EGJ55839.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD   S   PE+  VL  I  VL  +     S+ G+TD S  ++    N RLS DRA
Sbjct: 349 TILFDVGKSTIRPESATVLNNIVNVLNKYKNSKFSVEGYTDTSGNKD---KNQRLSEDRA 405

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
           YS    L+  G++  R+S   GF   +  IAS+        NRR++I
Sbjct: 406 YSVKAYLVDKGINPARLS-AKGFGPEK-PIASNKTKKGRELNRRVEI 450


>gi|254492051|ref|ZP_05105228.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224462748|gb|EEF79020.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 297

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
           I +L+KI  VL  +   I++ GHTD  P      R NW LS  RA S    L+  G    
Sbjct: 173 IPILKKIHNVLLKTDGRIAVAGHTDDVPINTSRYRSNWELSTSRATSVVHELLAPGDMPA 232

Query: 308 RISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338
               + G+A  + L+    P N A NRR++I+V
Sbjct: 233 ERFVLEGYADTKPLEPNDSPTNRARNRRVEIIV 265


>gi|255036139|ref|YP_003086760.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254948895|gb|ACT93595.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           V  E  +  + +S+ D+    +F   SS+       VL K+ ++L    E+ I I GHTD
Sbjct: 154 VQIEVKKGVVYVSLSDKM---LFRSGSSVINSAADNVLSKVAKILNDYKEIEILIEGHTD 210

Query: 274 ASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNS 329
             P   +   DNW LS+ RA +  + L K  GV   R+    G   +  K+A+D  P  S
Sbjct: 211 NVPIATDKVADNWDLSVLRATAVARTLQKKYGVEPVRMIA-GGRGEYLPKVANDSAPNRS 269

Query: 330 ANRRIDILV 338
            NRR +I++
Sbjct: 270 LNRRTEIII 278


>gi|229058360|ref|ZP_04196744.1| OmpA/MotB domain protein [Bacillus cereus AH603]
 gi|229166569|ref|ZP_04294321.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228616823|gb|EEK73896.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228719869|gb|EEL71459.1| OmpA/MotB domain protein [Bacillus cereus AH603]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ +L KK    L   V +N V  V      TG+ I I+D     +FD   +   PE 
Sbjct: 78  KKRMDELYKK----LKAYVDNNGVSQVNVYREDTGVSIVIVDNL---IFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             V+ ++          I + GHTD+ P  N     NW LS  RA +    L++    +D
Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190

Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
           +     G+A  +   ++D P N   NRR+ I +++
Sbjct: 191 KRLAAVGYADTKPVASNDSPQNWEKNRRVVIYIKE 225


>gi|110639014|ref|YP_679223.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281695|gb|ABG59881.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 37/256 (14%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL---------SNSQQSEHCKNSLT-R 149
           L+I   + +++ DL       +  Y+ L N    L          N+ + E    SL  R
Sbjct: 73  LAISNQLLQDTTDLNAALRKTQANYEALNNTYERLLSTHNKIINYNASELEKLNKSLAKR 132

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           + E GK     ++ E+ +N+           EKI+A K ++ + +L  K++S L      
Sbjct: 133 ELEVGKLQADLSERERRVNE----------LEKIIADK-ERAVNELRNKVTSALLNYKD- 180

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
              K +  +     + +S+ +Q    +F   S+   P+ +  L+K+  VL    ++ I +
Sbjct: 181 ---KDLTIQVKDGKVYVSLAEQ---LLFKSGSTDVDPKGVEALKKLAAVLKEQQDITIMV 234

Query: 269 RGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            GHTD  P     N  +DNW LS+ RA S  ++L  +GV  D I  +       + +A+ 
Sbjct: 235 EGHTDDVPVSKGTNGIKDNWDLSVLRATSITRILTGAGV--DPIHVVPAGHGEFIPVATA 292

Query: 326 PMNSA---NRRIDILV 338
               A   NRR +I++
Sbjct: 293 KTAEARSQNRRTEIIL 308


>gi|167576592|ref|ZP_02369466.1| hypothetical protein BthaT_00570 [Burkholderia thailandensis TXDOH]
          Length = 433

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           LS L+ + I +G+L    + TR     S++  R   MF    S  LPE   VL K+   +
Sbjct: 296 LSILLKNEIARGLLTVDEDDTR-----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREV 350

Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAH 317
           A     +++ GH+D  P R     +N  LS  RA    Q+L++ G   D I S+  G A 
Sbjct: 351 ARVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHIRSEGRGDAQ 410

Query: 318 HRLKIASDPMNSANRRIDILV 338
              +  +    S NRR++I V
Sbjct: 411 PVAENTTPAGRSRNRRVEIAV 431


>gi|52079917|ref|YP_078708.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580]
 gi|52785288|ref|YP_091117.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580]
 gi|52003128|gb|AAU23070.1| motility protein B [Bacillus licheniformis ATCC 14580]
 gi|52347790|gb|AAU40424.1| MotB [Bacillus licheniformis ATCC 14580]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           K L+  +K++ +   KKI   ++  + + N+ K V  + T  G+L+SI D      FD  
Sbjct: 89  KDLSEAQKEKDKQSLKKIQEQVNRFIKEKNLQKQVNTKLTDEGLLLSIED---NIFFDSG 145

Query: 241 SSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298
            +    + I + +++ ++L  +    I I GHTD  P RN   + NW LS+ RA +   +
Sbjct: 146 KAEIRQQDIPLAKEVSDLLVLNPPRNIVISGHTDNVPIRNSQFKSNWHLSVMRAVNFMGL 205

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           L+++   + +I    G+   +  IAS+        NRR++IL+
Sbjct: 206 LIENPKLDAKIFSAKGYGEFK-PIASNDTEEGRRKNRRVEILI 247


>gi|32266001|ref|NP_860033.1| flagellar motor protein MotB [Helicobacter hepaticus ATCC 51449]
 gi|32262050|gb|AAP77099.1| flagellar motor component MotB [Helicobacter hepaticus ATCC 51449]
          Length = 251

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I +RG+TD +P    +R  DN+ LS  R+ S  + L+K+G+S +RIS  SG+  H+    
Sbjct: 153 IDVRGYTDNAPLPVGSRYKDNYELSSARSLSVMKNLIKNGISPERIS-FSGYGEHQAIAP 211

Query: 324 SD-PMNSA-NRRIDIL 337
           +D  +N A N R++I 
Sbjct: 212 NDSALNRAKNNRVEIF 227



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I++T +   + ++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISSTSNADSELLKTEF 52


>gi|229013711|ref|ZP_04170840.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048]
 gi|228747633|gb|EEL97507.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMLTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA 330
             P  N     NW LS  RA +  QVL+++  +  ++ S + G+  +R    +D P   A
Sbjct: 159 TVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTPEGKA 217

Query: 331 -NRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|260467043|ref|ZP_05813223.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029152|gb|EEW30448.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 13/104 (12%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           L + I+ LQK  E+      V+ + GHTD  P     R  DNW LS  R+ S  + L+++
Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIEN 303

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341
           GV  +R+   +GF   +     DP ++      NRRI++ + +R
Sbjct: 304 GVPANRLVA-AGFGEFQ---PLDPADTEEARNKNRRIELKLTER 343


>gi|110635517|ref|YP_675725.1| hypothetical protein Meso_3188 [Mesorhizobium sp. BNC1]
 gi|110286501|gb|ABG64560.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           L   I+ LQ+  E+      V+ + GHTD  P     R  DNW LS  RA +  + L++S
Sbjct: 246 LAGAILELQR--EIPPEINWVLRVDGHTDNIPLSGTGRFRDNWELSTARAVAVVKFLIES 303

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN-----SANRRIDILVEDR 341
           GV  +R+   +GF   +     DP N     S NRRI++ + +R
Sbjct: 304 GVPAERLVA-AGFGEFQ---PLDPENTTEARSRNRRIELKLTER 343


>gi|239832801|ref|ZP_04681130.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239825068|gb|EEQ96636.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322

Query: 323 ASDPMN--SANRRIDILVEDR 341
           ASD  +  + NRRI++ + +R
Sbjct: 323 ASDTADARAKNRRIELKLTER 343


>gi|167624989|ref|YP_001675283.1| flagellar motor protein MotB [Shewanella halifaxensis HAW-EB4]
 gi|167355011|gb|ABZ77624.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 29/162 (17%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++ +  KK++  L+  + D  ++    E+    I+I I   R    F   S    P    
Sbjct: 163 KINEQVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKP 216

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V++++GE+L     ++++ GHTD     N +   NW LS  RA +    L+         
Sbjct: 217 VVRRVGELLKDVPGIVTVSGHTDDWKISNELYSSNWDLSSKRAVAVAHELI--------- 267

Query: 310 SKISGFAHHRLKI----ASDPM---NSA-----NRRIDILVE 339
            ++ GF   R+K+    +S P+   NS+     NRR++I +E
Sbjct: 268 -RVKGFDQQRMKVVGMASSAPLVENNSSANRARNRRVEIAIE 308


>gi|114571128|ref|YP_757808.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114341590|gb|ABI66870.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 329

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P    ++Q   E+ +    VI I GHTD  P R     NW LS  RA S    +   GV 
Sbjct: 233 PIADAIIQLTDEIPSDLEWVIRIDGHTDPVPIRTTYPSNWHLSAARAISVVNWMEDLGVP 292

Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
            +R+   +GF  H   +   S   N+ NRRI++
Sbjct: 293 SNRLVA-AGFGEHYPMVEGRSAEANARNRRIEL 324


>gi|90422320|ref|YP_530690.1| hypothetical protein RPC_0800 [Rhodopseudomonas palustris BisB18]
 gi|90104334|gb|ABD86371.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 341

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 11/116 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287
            FD   +   PE    L K+   L        A    V+ + GHTD  P     + NW L
Sbjct: 227 FFDTGQAQLKPEGRAELDKLASALIDLDKKIPAEIAWVLRVDGHTDVRPITGAFKSNWEL 286

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS-DPMNSANRRIDILVEDR 341
           S  RA S  Q L+  GV   R+   +GF   + L +A+ +     NRRI++ + +R
Sbjct: 287 SSGRAISVVQYLVSLGVPPQRLVA-AGFGEFQPLDVAATEEAYKRNRRIELKLTER 341


>gi|229543005|ref|ZP_04432065.1| OmpA/MotB domain protein [Bacillus coagulans 36D1]
 gi|229327425|gb|EEN93100.1| OmpA/MotB domain protein [Bacillus coagulans 36D1]
          Length = 274

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 133/325 (40%), Gaps = 67/325 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KK+    +   N  +W + Y+DF+T+L+A F+V++ +++ D        Q F  F K L 
Sbjct: 3   KKRKKRQEEEGNSEAWLLPYSDFLTLLLALFIVLFAMSSID-------AQKFQKFSKVL- 54

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+F                S  ++  + S D    ST+  +++   + N    +  
Sbjct: 55  ---NGVFVG------------GTSFFDYTKQTSGD--DNSTSDTEKFLEQKKNDAQKNGD 97

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             +   K++ T D+  G+   +  + ++ IN               +A  +      L  
Sbjct: 98  STTNGSKSNSTTDASNGQGDAQLKETQQRIN-------------TYIAHNK------LEG 138

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K  ++L+G                 G+LI+I   R+  +FD   +    E I   + +  
Sbjct: 139 KFETSLTG----------------EGLLITI---RDNVLFDSGKAEVRKEDIKTAKALSN 179

Query: 258 VLAHS-TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I + GHTD  P  N + + NW LS+ RA +  ++++++     +     G+
Sbjct: 180 LLVMDPPRSIIVSGHTDNVPIHNSVFQSNWDLSVMRATNFLKIILENKNLNPKYFSAKGY 239

Query: 316 AHHRLKIASDPMN--SANRRIDILV 338
             +    ++D     + NRR+++L+
Sbjct: 240 GEYHPIASNDTQGGRAKNRRVEVLI 264


>gi|209965120|ref|YP_002298035.1| hypothetical protein RC1_1826 [Rhodospirillum centenum SW]
 gi|209958586|gb|ACI99222.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW]
          Length = 344

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 12/84 (14%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD+ P R+ AR   NW LS  RA +  + L+  G+  DR++  +GF  ++   
Sbjct: 266 VLRVDGHTDSVPIRS-ARFPSNWELSTARATAVVKYLIDQGIPADRLAA-AGFGQYQ--- 320

Query: 323 ASDPMNSA-----NRRIDILVEDR 341
             DP  SA     NRRI+I ++ R
Sbjct: 321 PLDPGTSAEALARNRRIEIKLDAR 344


>gi|332704885|ref|ZP_08424973.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332555034|gb|EGJ52078.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G +I I++      FD  S+   P+   VL  +  VL  +    + + G
Sbjct: 92  LQGTGVSVTRQGDMI-ILNMPGNVTFDTGSAGIKPQFFEVLNSVAIVLKEYEKTYVDVLG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           HTD++   N+   N RLS DRA S  Q L+  GV ++R   + G   ++  IA +     
Sbjct: 151 HTDSTGSMNL---NMRLSQDRAQSVAQYLISQGVQQERF-LVRGMGPNQ-PIADNSTAAG 205

Query: 328 NSANRRIDI 336
            S NRR++I
Sbjct: 206 RSQNRRVEI 214


>gi|323700140|ref|ZP_08112052.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323460072|gb|EGB15937.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 21/154 (13%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  L  +N+ + + F ++R    + I+    + +F        PE    L +   +L   
Sbjct: 88  LQSLKWENVSQDINFSSSR---FVQILSINASLLFGPDGYTLSPEGRATLDRFLPLLEQV 144

Query: 263 TEVISIRGHTDASPFRNIARDN-------------WRLSLDRAYSAYQVLMKSGVSEDRI 309
              + + GHT  S  R+    N             W+LSL+R  + Y+ L+  G+S D +
Sbjct: 145 KYPLLLAGHT--SDLRDELGMNYQPGDDSRNPDLSWKLSLNRTLAIYRYLLDKGMSPDML 202

Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDR 341
            ++ GF  +R     D P N A NRR+DI+++ R
Sbjct: 203 -RVEGFGKYRPHYPPDTPENRARNRRVDIVLDKR 235


>gi|167741000|ref|ZP_02413774.1| hypothetical protein Bpse14_23241 [Burkholderia pseudomallei 14]
          Length = 433

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           LS L+ + I +G+L   E  R     S++  R   MF    S  L E   VL K+   +A
Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLSEIEPVLDKVAREVA 351

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318
                +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI S+  G A  
Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411

Query: 319 RLKIASDPMNSANRRIDILV 338
             + A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|163781627|ref|ZP_02176627.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882847|gb|EDP76351.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 188 RKKRLQDLAKKIS----STLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           R K+  +L K+I+      LS G+ AD +V G       T + + +   R  P+    S 
Sbjct: 84  RVKKFAELKKEITKIKEELLSMGIEADYLVTG-------TCMKLRVNTNRLYPL---GSE 133

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301
            P P+   +   +   L   +  I+  G+TD  P  N     NW LS  RA S  ++ + 
Sbjct: 134 EPYPQAKELFLNMCSRLKPFSLPITFEGYTDNMPISNPRFPSNWELSAMRAVSVLRLFIT 193

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339
            G  ++ +S +    HH +     P N   NRRI+  ++
Sbjct: 194 CGYPQELLSAVGYGEHHPIAPNDTPANRERNRRIEFCIK 232


>gi|83716132|ref|YP_438328.1| hypothetical protein BTH_II0126 [Burkholderia thailandensis E264]
 gi|167614770|ref|ZP_02383405.1| hypothetical protein BthaB_00705 [Burkholderia thailandensis Bt4]
 gi|257141357|ref|ZP_05589619.1| hypothetical protein BthaA_19439 [Burkholderia thailandensis E264]
 gi|83649957|gb|ABC34021.1| OmpA domain protein [Burkholderia thailandensis E264]
          Length = 433

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 4/138 (2%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A  
Sbjct: 296 LSILLKNEIARGLL--TVDEDDARSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVARV 353

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRL 320
              +++ GH+D  P R     +N  LS  RA    Q+L++ G   D I S+  G A    
Sbjct: 354 GGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHIRSEGRGDAQPVA 413

Query: 321 KIASDPMNSANRRIDILV 338
           +  +    S NRR++I V
Sbjct: 414 ENTTPAGRSRNRRVEIAV 431


>gi|311067881|ref|YP_003972804.1| flagellar motor protein MotB [Bacillus atrophaeus 1942]
 gi|310868398|gb|ADP31873.1| flagellar motor protein MotB [Bacillus atrophaeus 1942]
          Length = 262

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278
           T  G+LI+I   +++  FD   +    + I + ++I ++L  +    I I GHTD  P +
Sbjct: 131 TDEGLLITI---KDSIFFDSGKATIREQDIPLAEEISDLLVLNPPRNIIISGHTDNMPIK 187

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N   + NW LS+ RA +   +L+++   + ++    GF  ++    +D     S NRR++
Sbjct: 188 NSQFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGFGEYKPVATNDTAEGRSKNRRVE 247

Query: 336 ILVEDR 341
           +L+  R
Sbjct: 248 VLILPR 253



 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89
          SW + YAD +T+L+A F+V++  ++ D    K + + FN     + T   G+ D  +  P
Sbjct: 17 SWLVPYADILTLLLALFIVLFASSSVDAAKFKMLSKSFN----EVFTGGTGVMDYSSVTP 72

Query: 90 PERSSQNKID 99
          PE S Q  ID
Sbjct: 73 PE-SEQQGID 81


>gi|302343736|ref|YP_003808265.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640349|gb|ADK85671.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294
           +F   S+   P  +  L ++  V+      +S+ GHTD  P+R    +DNW LS  RA S
Sbjct: 120 LFAPGSAKLSPNILPFLDEVAAVIKDRAYPLSVYGHTDDEPWRGKGGQDNWTLSAQRALS 179

Query: 295 AYQVLMKSGVSEDRISKIS 313
               L+  GVS  R++   
Sbjct: 180 VVAHLVSRGVSASRLAAFG 198


>gi|229098968|ref|ZP_04229903.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
 gi|229117997|ref|ZP_04247357.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228665446|gb|EEL20928.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228684466|gb|EEL38409.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 9/124 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334
           N     NW LS  RA +  QVL+++  +   + S I G+  +R    +D P   A NRR+
Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-GYGEYRSIAQNDTPEGKAKNRRV 221

Query: 335 DILV 338
           ++ +
Sbjct: 222 EVFI 225


>gi|319790061|ref|YP_004151694.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
 gi|317114563|gb|ADU97053.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F      P P+ I ++ +I   L      ++I G+TD +P        NW LS  RA +
Sbjct: 125 LFPPGEDRPYPQAIPIIMEICRKLKELDLPLTIEGYTDNTPIHTKRFPSNWELSAARATA 184

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
             ++ ++ G    ++S      +H +   + P   A NRRI+I++
Sbjct: 185 ILRLFIQCGYDPKKLSAAGCGPYHPIAPNNTPEGRAKNRRIEIVI 229


>gi|261409603|ref|YP_003245844.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261286066|gb|ACX68037.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           GI I++ D+    +FD   +   P    VL K+  +       +SI GHTD  P    + 
Sbjct: 149 GIAITLSDRF---LFDVGKAELKPGAAPVLGKLASLFGDLNTTVSIEGHTDNVPIGRYSS 205

Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            +DNW LS  RA S  +  ++    +    + +G+A  R     A+      NRR++I V
Sbjct: 206 YKDNWELSGARAMSVLRFFLEHSKLDPAGFQYAGYADTRPAADNATAEGKQKNRRVEITV 265



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84
          W I YAD +T+L+ FF+VM+ ++  D +  K + Q        G +++    GI      
Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81

Query: 85 -DEQNPPERSSQNK 97
           + +NPP + + ++
Sbjct: 82 ENHKNPPPKPAADE 95


>gi|319651875|ref|ZP_08005999.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2]
 gi|317396434|gb|EFV77148.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D + SI   EN    P   E+I       +L  L + +    S L  + + K ++   T 
Sbjct: 60  DFQPSIIPAEN----PEQNEEIKENGDSGQLDSLDELLMEIQSFLDENGLEKVIVANRTE 115

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G+++ + +Q    +F+   +  +  +   L K+G +LA+   ++ + GHTD  P     
Sbjct: 116 RGVVLVLQEQV---LFESGDASLIDSSYSFLDKVGTLLANMPNLVKVEGHTDDRPITTYR 172

Query: 282 R-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDIL 337
              NW LS  RA +  + L  K  +   R   + G+   R  +  S P N   NRR++I+
Sbjct: 173 YPSNWELSAARASTVIRYLTEKHNLDSHRFMAV-GYGETRPIVPNSGPENWEKNRRVEII 231

Query: 338 VED 340
           + D
Sbjct: 232 ISD 234


>gi|149193957|ref|ZP_01871055.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
 gi|149135910|gb|EDM24388.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 266 ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I IRG+TD    P  +  RDNW LS  RA S  ++L+K GV   ++S  +   +H +   
Sbjct: 163 IQIRGYTDNLPPPKNSPYRDNWDLSAARALSVLKILIKDGVDPKQLSAAAYGEYHPIASN 222

Query: 324 SDPMN-SANRRIDI 336
             P     NRR++I
Sbjct: 223 LTPEGRDKNRRVEI 236


>gi|120603975|ref|YP_968375.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120564204|gb|ABM29948.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
          Length = 259

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 26/148 (17%)

Query: 210 NIVKGVLFETTRTGI-------LISIIDQRNT--PMFDKSSSIPLPETIVVLQKIGEVLA 260
           +I +G+LF++    +       L  I +Q +T  P +   +  P P+      K G +  
Sbjct: 102 HIPEGILFDSGSAALPPEGGRTLDIIAEQLSTLLPCYSGKADAPAPDECRDNYKPGRL-- 159

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRIS 310
              E + + GHTD  P   R   +DNW LS  RA + Y+ L+           +  D + 
Sbjct: 160 ---EAVFVEGHTDNVPMPPRGGIQDNWDLSTKRAVTTYRHLLGHAPTLAAFVNLDGDPLF 216

Query: 311 KISGFAHHRLKIASD-PMNSA-NRRIDI 336
            +SG+A  R +   D P   A NRRID+
Sbjct: 217 GVSGYAASRPRNPHDTPTPDAQNRRIDL 244


>gi|150019084|ref|YP_001311338.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905549|gb|ABR36382.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +++L D+ KK+      LV ++ +KG V+      G++IS  D   +  F+   +   P+
Sbjct: 92  REKLSDVKKKVDE----LVNNSELKGSVITSIQERGLIISFND---SVFFNSGQAAIKPD 144

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSG-VS 305
               L  I ++L      I + GHTD      +    NW+LS  RA +  + L+  G V 
Sbjct: 145 WQNKLISISKILNGIDNYIRVEGHTDNVVINTDYFHSNWQLSAVRASNVVEFLIYQGNVK 204

Query: 306 EDRISKISGFAHHR--LKIASDPMNSANRRIDILVED 340
            +R+S + G+  +R      ++   +ANRR+DI++ D
Sbjct: 205 PERLSSV-GYGEYRPVKSNTTEEGKAANRRVDIVILD 240


>gi|229105135|ref|ZP_04235786.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|228678316|gb|EEL32542.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
          Length = 233

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 9/124 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334
           N     NW LS  RA +  QVL+++  +   + S I G+  +R    +D P   A NRR+
Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-GYGEYRSIAPNDTPEGKAKNRRV 221

Query: 335 DILV 338
           ++ +
Sbjct: 222 EVFI 225


>gi|86359103|ref|YP_470995.1| hypothetical protein RHE_CH03512 [Rhizobium etli CFN 42]
 gi|86283205|gb|ABC92268.1| probable outer membrane protein [Rhizobium etli CFN 42]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS +RA S  + L+  GV  DR+   +GF   +   
Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSERAISVVKFLIGQGVPADRLVA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDI 336
             D     + NRRI++
Sbjct: 323 PGDTPDARATNRRIEL 338


>gi|228903029|ref|ZP_04067168.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
 gi|228967605|ref|ZP_04128628.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792096|gb|EEM39675.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856622|gb|EEN01143.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|229072015|ref|ZP_04205225.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|229081763|ref|ZP_04214256.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228701608|gb|EEL54101.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228711174|gb|EEL63139.1| OmpA/MotB domain protein [Bacillus cereus F65185]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|260364262|ref|ZP_05776961.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030]
 gi|308113750|gb|EFO51290.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030]
          Length = 278

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F + S+   P+   ++++I E++     ++ I GHTD       + R NW 
Sbjct: 187 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 246

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           LS  RA S  Q           + K+ GF+H RL++
Sbjct: 247 LSSQRAVSVAQ----------EMEKVRGFSHQRLRV 272


>gi|298505133|gb|ADI83856.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens
           KN400]
          Length = 289

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD-ASPFRNIAR---DNWRLSLD 290
           +FD   +   P  + +LQK+ E+L   T+  I I GHTD      N+A+    NW LS  
Sbjct: 175 LFDSGKAEVKPAGMDILQKVVEILKDVTDKAIRIEGHTDNVQIVGNLAKRFPSNWELSSA 234

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILV 338
           RA +  + L   G+    +S ++   +H +    +D   + NRRI+I++
Sbjct: 235 RAINVTRFLQSRGIDPAVLSAVAYGEYHPVAPNDTDEGKAKNRRIEIIL 283


>gi|227823348|ref|YP_002827320.1| hypothetical protein NGR_c28210 [Sinorhizobium fredii NGR234]
 gi|227342349|gb|ACP26567.1| flagellar motor protein [Sinorhizobium fredii NGR234]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+ A    V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +G
Sbjct: 256 EIPAEINWVLRVDGHTDNVPLSGTGRFADNWELSSARATSVVKFLISRGVPADRLVA-AG 314

Query: 315 FAHHRLKIASDPMN--SANRRIDI 336
           F  ++     + +   + NRRI++
Sbjct: 315 FGEYQPIAVGESLEARAQNRRIEL 338


>gi|329928770|ref|ZP_08282619.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5]
 gi|328937551|gb|EGG33969.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5]
          Length = 271

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           GI I++ D+    +FD   +   P    VL K+  +       +SI GHTD  P    + 
Sbjct: 149 GIAITLSDRF---LFDVGKAELKPGAAPVLGKLASLFGDLNTTVSIEGHTDNVPIGRYSS 205

Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            +DNW LS  RA S  +  ++    +    + +G+A  R     A+      NRR++I V
Sbjct: 206 YKDNWELSGARAMSVLRFFLEHSKLDPGGFQYAGYADTRPAADNATAEGKQKNRRVEITV 265



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84
          W I YAD +T+L+ FF+VM+ ++  D +  K + Q        G +++    GI      
Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81

Query: 85 -DEQNPPERSSQNK 97
           + +NPP + + ++
Sbjct: 82 ENHKNPPPKPAADE 95


>gi|228974615|ref|ZP_04135181.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981210|ref|ZP_04141510.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228778410|gb|EEM26677.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228785018|gb|EEM33031.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|228923254|ref|ZP_04086544.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954780|ref|ZP_04116801.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960776|ref|ZP_04122414.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048216|ref|ZP_04193785.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|229111973|ref|ZP_04241517.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|229129795|ref|ZP_04258762.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|229147069|ref|ZP_04275429.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|229152704|ref|ZP_04280891.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|229180776|ref|ZP_04308114.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|229192709|ref|ZP_04319668.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228590799|gb|EEK48659.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228602754|gb|EEK60237.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|228630767|gb|EEK87409.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|228636457|gb|EEK92927.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|228653711|gb|EEL09582.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|228671537|gb|EEL26837.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|228723203|gb|EEL74579.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|228798911|gb|EEM45887.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804900|gb|EEM51498.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836460|gb|EEM81811.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|88812420|ref|ZP_01127670.1| flagellar motor protein [Nitrococcus mobilis Nb-231]
 gi|88790427|gb|EAR21544.1| flagellar motor protein [Nitrococcus mobilis Nb-231]
          Length = 312

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  L    I +G L E  + G  I +I  R    F   S+  +   +  ++KIG+ +  +
Sbjct: 149 LQSLFRQEIERG-LIEVAQIGAQI-VIRVREHGSFPSGSAKLIKPFLPAVRKIGQAIRMT 206

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              + I GHTD  P  N   R NW LS  RA S  + L     V  +RI+ ++G A  R 
Sbjct: 207 EGQVIIAGHTDNVPIHNAQFRSNWDLSAARAISLLRALGAVEAVDANRIT-VAGHADTRP 265

Query: 321 KIASD-PMNSA-NRRIDILVEDRQG 343
            +++D P + A NRR++I++ +  G
Sbjct: 266 IVSNDTPRHRARNRRVEIILVNGNG 290


>gi|303248961|ref|ZP_07335208.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489684|gb|EFL49620.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           K +  A++ +++ Q+L     + ++ L  +   + +     R  + I+ +D+    +F  
Sbjct: 54  KAEARAVELERKTQELQTAYDALVADLRGEVDSRDIRVRQFREKLEINFVDKI---LFAS 110

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297
            S+   P    +L+K+G VLA   +  I + GHTD++P  + +   NW LS  R+ S  +
Sbjct: 111 GSAEITPRGREILRKVGGVLAKVKDKSIYVVGHTDSNPIHSALYPSNWELSTARSASVIR 170

Query: 298 VLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
            L +S GV+ +R + +   F       A+      NRR+DI+V +
Sbjct: 171 FLSESGGVTPERFTAMGRAFYQPVASNATPEGRHENRRVDIIVAE 215


>gi|14331084|emb|CAC40971.1| hypothetical protein [Vibrio pommerensis]
          Length = 378

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  S+   P  ++ LQ +   L    E V+ I GHTD+     +   N RLS  RA S
Sbjct: 262 LFETGSTSLSPSLMLQLQPLLARLKQYPETVVEISGHTDSKGSDTL---NQRLSEQRAQS 318

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDIL 337
               L+  GV  +RI+++ G+    L +AS+   S    NRR++I+
Sbjct: 319 VANYLISKGVDPERITRVVGYGES-LPVASNDTESGRAQNRRVEIV 363


>gi|302037673|ref|YP_003797995.1| flagellar motor protein MotB [Candidatus Nitrospira defluvii]
 gi|300605737|emb|CBK42070.1| Flagellar motor protein MotB [Candidatus Nitrospira defluvii]
          Length = 259

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R++++ KKI  +L+  + D  +K  + ET    I+IS+ +     +F    +   PE +
Sbjct: 91  RRMKEIMKKIHPSLALEMPD--IK--IIETGNGTIMISLPESI---LFTSGEARVRPEAL 143

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+ + ++L      + I GHTD  P R      NW LS  RA    ++   S + E  
Sbjct: 144 PFLKSLAQILIEMDRHVRILGHTDNVPIRTAQFPSNWELSAVRAVMVVRIF--SELYEVP 201

Query: 309 ISKIS--GFAHHRLKIASDPMN--SANRRIDILVEDR 341
           IS +S  GFA  +    +D     + NRR++I++ ++
Sbjct: 202 ISHLSATGFADSKPVATNDTPEGRTKNRRVEIIILEK 238


>gi|229132541|ref|ZP_04261390.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
 gi|228650887|gb|EEL06873.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
          Length = 225

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ +L KK    L   V +N V  V      TG+ I I+D     +FD   +   PE 
Sbjct: 78  KKRMDELYKK----LKAYVDNNGVSQVNVYREDTGVSIVIVDNL---IFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             V+ ++          I + GHTD+ P  N     NW LS  RA +    L++    +D
Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190

Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
           +     G+A  +   ++D P N   NRR+ I +++
Sbjct: 191 KRLAAVGYADTKPVESNDSPQNWEKNRRVVIYIKE 225


>gi|319781002|ref|YP_004140478.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166890|gb|ADV10428.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 13/104 (12%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           L + I+ LQK  E+      V+ + GHTD  P     R  DNW LS  R+ S  + L+++
Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIEN 303

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341
           GV  +R+   +GF   +     DP ++      NRRI++ + +R
Sbjct: 304 GVPANRLVA-AGFGEFQ---PLDPADTEEARNKNRRIELKLTER 343


>gi|213864488|ref|ZP_03386743.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 102

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P+ N  +   NW LS DRA ++ + L+  G+   ++ ++ G A         P 
Sbjct: 1   GHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPD 60

Query: 328 NSANRRIDILVEDRQG 343
           ++ NRRI +LV ++Q 
Sbjct: 61  DAINRRISLLVLNKQA 76


>gi|207725016|ref|YP_002255413.1| chemotaxis (motility protein b) transmembrane (partial sequence)
          [Ralstonia solanacearum MolK2]
 gi|206590245|emb|CAQ37206.1| probable chemotaxis (motility protein b) transmembrane (partial
          sequence) [Ralstonia solanacearum MolK2]
          Length = 81

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 23/25 (92%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINA 56
          +WKI YADF+T +MAFFL+MW++++
Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSS 50


>gi|167629589|ref|YP_001680088.1| flagellar motor protein motb, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592329|gb|ABZ84077.1| flagellar motor protein motb, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 298

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
           +W I YAD +T+L+A F+VM+ ++  D    +  KKA+E  F   G + + A+    D +
Sbjct: 15  TWLIPYADMLTLLLALFIVMFAVSQVDTKKFEALKKAMESVFK--GGSGIMANPTPLDTE 72

Query: 88  N----PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
                PP+ S    +  + D    KN VD  I     +KQ +
Sbjct: 73  GASDAPPDMSVMESLKETRDLQEIKNRVDRYIEEKGLEKQVE 114



 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++K  + LQ++  ++   +       + K V     R G+ IS    R+  +FD   +  
Sbjct: 86  SLKETRDLQEIKNRVDRYIE---EKGLEKQVETNLVREGLQISF---RDAALFDSGKADL 139

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
             E +  L  I + L + +  + I GHTD  P        NW LS  RA +  + ++   
Sbjct: 140 KREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWDLSAKRALNVMKYILNDK 199

Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
            +        G+  +  K  +D P   A NRR+++++
Sbjct: 200 RNNPVKFTAVGYGEYHPKATNDTPEGRAQNRRVEVMI 236


>gi|49187402|ref|YP_030654.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227817292|ref|YP_002817301.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|254736614|ref|ZP_05194320.1| chemotaxis protein MotB [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741652|ref|ZP_05199339.1| chemotaxis protein MotB [Bacillus anthracis str. Kruger B]
 gi|49181329|gb|AAT56705.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227002900|gb|ACP12643.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
          Length = 156

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 24  FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 80

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 81  NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 139

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 140 KNRRVEVFI 148


>gi|83642951|ref|YP_431386.1| flagellar motor protein [Hahella chejuensis KCTC 2396]
 gi|83630994|gb|ABC26961.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 275

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDR 308
           VL K+ +VLA     I + GHTD  P  ++  R NW LS  RA S    L+  G +   R
Sbjct: 177 VLMKVTDVLADCKGDILVTGHTDDRPIDSVKFRSNWDLSAARAVSVVHRLVLDGRLDASR 236

Query: 309 ISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342
           +S I G A  R  +   +D   + NRR++I +E+ +
Sbjct: 237 VSAI-GQAETRPLVPNDTDEHRAQNRRVEIHIENAE 271


>gi|254497489|ref|ZP_05110282.1| flagellar motor protein MotD [Legionella drancourtii LLAP12]
 gi|254353304|gb|EET12046.1| flagellar motor protein MotD [Legionella drancourtii LLAP12]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
           +D ++  +F    +    E +V L +I   L  S  ++SI G+TD  P        NW L
Sbjct: 115 LDIKSGALFGSGDADLKAEALVKLMQIAGKLKKSHAIVSIEGYTDNVPIETPQYPSNWEL 174

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
           S  RA S  +VL   G+   RI  ++G+   +  IA   +D   + NRR+ I++
Sbjct: 175 SATRAASVGRVLNAYGIDSHRI-MVTGYG-DQYPIADNVTDVGRALNRRVSIII 226



 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          W + YADF+T+L AFF+VM+ I++ +    K++ +  N
Sbjct: 17 WIVSYADFITLLFAFFVVMYAISSLNTSKYKSLSEGMN 54


>gi|229019729|ref|ZP_04176535.1| OmpA/MotB domain protein [Bacillus cereus AH1273]
 gi|229025955|ref|ZP_04182345.1| OmpA/MotB domain protein [Bacillus cereus AH1272]
 gi|228735356|gb|EEL85961.1| OmpA/MotB domain protein [Bacillus cereus AH1272]
 gi|228741574|gb|EEL91768.1| OmpA/MotB domain protein [Bacillus cereus AH1273]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKELSNLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSTI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|325982116|ref|YP_004294518.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531635|gb|ADZ26356.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           I E+ A     I I GHTD  P   I+ DN  LS  RA +   VL+  GV   RIS I G
Sbjct: 146 IKEISASPNSRILIEGHTDNIPTGKISSDNMDLSRRRARAIANVLILHGVPATRISII-G 204

Query: 315 FAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           +   R  +  A+D   + NRR+++ +   +G
Sbjct: 205 YGDKRPIVSNATDEGRAKNRRVEVKLMPPEG 235


>gi|124516288|gb|EAY57796.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum
           rubarum]
          Length = 261

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
           + + VL+KI  +LA +   I + G+TD  P R  +R  +NW LS  RA +    L++ G 
Sbjct: 133 KAVPVLRKIAALLARTNHEIRVHGYTDNQPIRT-SRYPNNWALSTMRAVNVLTRLLEYGS 191

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342
            +      +GF   R  IAS+        NRR++IL+ +R+
Sbjct: 192 IDPGRMGAAGFGKFR-PIASNLTPEGREKNRRVEILIMNRE 231


>gi|119714995|ref|YP_921960.1| OmpA/MotB domain-containing protein [Nocardioides sp. JS614]
 gi|119535656|gb|ABL80273.1| OmpA/MotB domain protein [Nocardioides sp. JS614]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 77/333 (23%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK-- 74
           +KK   +   +N   W + YAD +T+LM  F+VM+ ++  D+    A++      FG   
Sbjct: 8   RKKPPEEPEHDNHERWLVTYADMLTLLMVLFIVMFAMSQVDEAKYNALKSGLAEGFGAES 67

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           ++MT S  +                  +++++ +   D              + +  F  
Sbjct: 68  SIMTGSTSV------------------LEDNLAETGPDY-------------VSSQAFQA 96

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             + Q +  + ++T  +E+ + L        +  K     L  + K+ + A+    R   
Sbjct: 97  MPADQQQLVRAAVT--AEERRRLQAQYAEAAAEAKR----LEAVRKQLMKAL----RAAG 146

Query: 195 LAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           LAK + +T+   GLV   + + V+FE       I+ +  R   + D              
Sbjct: 147 LAKDVQATIDDRGLVVSLVSRHVVFEPD-----IAQLSARGERVVD-------------- 187

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRI 309
             +  VL      + I GHT+  P   R  A D W LS  RA +  + L + G V + R+
Sbjct: 188 -TLSRVLRDVPNALRIDGHTNQEPVKPRFFATD-WDLSAARAVTVLRRLNEHGDVPKKRL 245

Query: 310 SKISGFAHHRLKIASDPMNSA----NRRIDILV 338
           S +S F + R  +  DP        N+R+DI+V
Sbjct: 246 S-LSAFGNERPLV--DPATPGSQEINKRVDIVV 275


>gi|303248999|ref|ZP_07335244.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489585|gb|EFL49525.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +K L+D+ K++++ L GL        V       G+ +++   R    FD +S+   P  
Sbjct: 165 RKSLEDIRKELTAKL-GL----DTSAVEIVPRENGVELNL---RGAAFFDLASAEIKPAA 216

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+ I   L+ +   +++ GHTD  P  + +   NW LS  RA    + L+  GV  +
Sbjct: 217 LPLLRDIAATLSGTPYKVTVEGHTDNLPIESWLYPSNWELSSARASRVARFLIDGGVPRN 276

Query: 308 RISKISGFAHHRLKIASD-------PMNSA-NRRIDILV 338
            + ++ G A  +    +D       P N A NRR+ ILV
Sbjct: 277 HL-RVEGLADTQPVAPNDDEAGRPIPENQAKNRRVVILV 314


>gi|319778099|ref|YP_004134529.1| type IV / vi secretion system protein, dotu family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317171818|gb|ADV15355.1| type IV / VI secretion system protein, DotU family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 440

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 17/86 (19%)

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I++ GHTD+ P +  N    N RLS  RA +   +L+++GV  DR+       H   + A
Sbjct: 361 ITVVGHTDSVPLQKTNPLSTNQRLSEARAQTIADMLVQNGVPRDRV-------HSEGRAA 413

Query: 324 SDPM--------NSANRRIDILVEDR 341
           +DP+         + NRR+++LVE R
Sbjct: 414 TDPVATDSTREGRALNRRVEVLVEKR 439


>gi|229175219|ref|ZP_04302735.1| OmpA/MotB domain protein [Bacillus cereus MM3]
 gi|228608355|gb|EEK65661.1| OmpA/MotB domain protein [Bacillus cereus MM3]
          Length = 234

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|254687000|ref|ZP_05150858.1| chemotaxis protein MotB [Bacillus anthracis str. CNEVA-9066]
 gi|254724563|ref|ZP_05186346.1| chemotaxis protein MotB [Bacillus anthracis str. A1055]
 gi|254754750|ref|ZP_05206785.1| chemotaxis protein MotB [Bacillus anthracis str. Vollum]
 gi|254757582|ref|ZP_05209609.1| chemotaxis protein MotB [Bacillus anthracis str. Australia 94]
          Length = 153

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 21  FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 77

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 78  NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 136

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 137 KNRRVEVFI 145


>gi|327404103|ref|YP_004344941.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319611|gb|AEA44103.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 293

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R  +L KK++ TL   +       +  E     + +S+ D+    +F   S+   P+ + 
Sbjct: 129 RQDELTKKLNQTLRDALVGFNSDELTMEIRDGKVYVSMSDKL---LFKSGSTGVEPKGVE 185

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSED 307
            L+ + +VL  + ++ I + GHTD  P +  + +DNW LS+ RA S  ++L  K  V+  
Sbjct: 186 ALKVLADVLNKNPDIQILVEGHTDNVPIKTAVFKDNWDLSVARATSITRMLNEKYAVAAT 245

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R++  SG   +  K ++D     + NRR +I++
Sbjct: 246 RMT-ASGRGEYFPKASNDTTEGKAKNRRTEIIL 277


>gi|150397861|ref|YP_001328328.1| hypothetical protein Smed_2663 [Sinorhizobium medicae WSM419]
 gi|150029376|gb|ABR61493.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 342

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+ A    V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +G
Sbjct: 255 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 313

Query: 315 FAHHRLKIASDPMN--SANRRIDI 336
           F  ++    SD     + NRRI++
Sbjct: 314 FGEYQPIAPSDTQEARAQNRRIEL 337


>gi|262402758|ref|ZP_06079319.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586]
 gi|262351540|gb|EEZ00673.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586]
          Length = 304

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 79/334 (23%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85
           W   +AD M++LM FF+++   +  D    K I       FG +N +      KG  I  
Sbjct: 2   WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61

Query: 86  EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           ++  P R     ID+ + +   IT+ +++ + G +++    QR                 
Sbjct: 62  QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGDSDRAGGNQR----------------- 104

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
                 DS K   L      E S  + +N               +    Q  AK +S  +
Sbjct: 105 ------DSGK---LTGGQSAESSTQENQNT--------------QSDMQQQQAKAMSEQM 141

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQKIGE 257
              VA++I K +  E  +  I +  + Q      R    F + S+   P+   ++++I +
Sbjct: 142 E-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAD 200

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++      + + GHTD       + R NW LS  RA S  Q           + K+ GF 
Sbjct: 201 LVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFD 250

Query: 317 HHRLKIA------------SDPMNSANRRIDILV 338
           H RL++             ++   + NRR++I +
Sbjct: 251 HQRLQVRGMADTQPLGPNDTEAQRALNRRVEISI 284


>gi|269836612|ref|YP_003318840.1| OmpA/MotB domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785875|gb|ACZ38018.1| OmpA/MotB domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E T+ GI+I + +   + +F        PE   VL  I  ++      + + GHTD  P 
Sbjct: 106 ELTQEGIVIHLAE---SVLFPPGEVQLRPEAHRVLADIAAIIGPMPFPVRVEGHTDNVPP 162

Query: 278 RNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
            N    DNW LS  RA S  + L    GV  +R+  + G+A HR +  +  +     NRR
Sbjct: 163 ANPNYPDNWALSTMRAVSTVRFLSDVQGVPAERLVAV-GYAEHRPRADNRTLEGRRKNRR 221

Query: 334 IDILV 338
           +D+++
Sbjct: 222 VDLVI 226


>gi|228917149|ref|ZP_04080707.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929558|ref|ZP_04092577.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935820|ref|ZP_04098632.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948234|ref|ZP_04110518.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093607|ref|ZP_04224708.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|229124075|ref|ZP_04253267.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228659377|gb|EEL15025.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228689816|gb|EEL43622.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|228811592|gb|EEM57929.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823877|gb|EEM69697.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830137|gb|EEM75755.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842567|gb|EEM87657.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 234

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|229186744|ref|ZP_04313902.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|228596757|gb|EEK54419.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
          Length = 234

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 218 KNRRVEVFI 226


>gi|330721195|gb|EGG99305.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC2047]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +L+ ++ S    LV D  +       + T I IS+    +  +F+  S+    +++ V
Sbjct: 110 LSELSDQVESAFGDLVRDGEIT---ISGSETWIEISL---SSGLLFNSGSANLNRQSLPV 163

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L++I  +L+     + + G TD  P ++ I   NW LS  R+ +  ++L +SGV  +R++
Sbjct: 164 LEEISSILSGYENPVHVEGFTDDIPIQSGIFPSNWELSAARSAAVVRLLSESGVEPNRLA 223

Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338
            + G+   +  IAS+        NRR+ ++V
Sbjct: 224 AV-GYGQFQ-PIASNESAEGRGKNRRVALIV 252



 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W I Y+DFMT+L AFF+VM+ I++ ++   K + +
Sbjct: 18 WLISYSDFMTLLFAFFVVMYSISSVNEGKYKVLSE 52


>gi|75761764|ref|ZP_00741702.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490749|gb|EAO54027.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 256

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|30022590|ref|NP_834221.1| flagellar motor protein MotB [Bacillus cereus ATCC 14579]
 gi|206969568|ref|ZP_03230522.1| chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218232559|ref|YP_002369307.1| flagellar motor protein MotB [Bacillus cereus B4264]
 gi|296504987|ref|YP_003666687.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171]
 gi|29898148|gb|AAP11422.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579]
 gi|206735256|gb|EDZ52424.1| chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218160516|gb|ACK60508.1| chemotaxis protein MotB [Bacillus cereus B4264]
 gi|296326039|gb|ADH08967.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171]
          Length = 262

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|326942295|gb|AEA18191.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 262

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|218899667|ref|YP_002448078.1| chemotaxis protein MotB [Bacillus cereus G9842]
 gi|218542530|gb|ACK94924.1| chemotaxis protein MotB [Bacillus cereus G9842]
          Length = 262

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|116253762|ref|YP_769600.1| hypothetical protein RL4023 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258410|emb|CAK09513.1| putative chemotaxis protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 264 VLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDI 336
             D     S NRRI++
Sbjct: 323 PGDTPDARSTNRRIEL 338


>gi|317121531|ref|YP_004101534.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591511|gb|ADU50807.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 11/154 (7%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           ++RL+DL  ++++ L     D  + G    + T  G+ I   DQ     FD   +   PE
Sbjct: 182 EERLRDLVDQVNAALR----DAGLGGRASAQLTDRGVAIIFEDQV---FFDLGRADLRPE 234

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++  +LA     I + GHTD  P   +    NW LS  RA +  + L +    +
Sbjct: 235 GRELLRRLAPILARVPGTILVEGHTDNLPIHSDRFPSNWELSTARATTVVRFLAEQAGLD 294

Query: 307 DRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
            R    +G+   R +    S+   + NRR++I+V
Sbjct: 295 PRRLAAAGYGEWRPRFPNTSEANRARNRRVEIVV 328


>gi|241206240|ref|YP_002977336.1| hypothetical protein Rleg_3551 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860130|gb|ACS57797.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 264 VLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDI 336
             D     S NRRI++
Sbjct: 323 PGDTPDARSTNRRIEL 338


>gi|23013938|ref|ZP_00053784.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 19/165 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  LQDL  ++   ++G   ++ V          GI++++    +  MF   S+   PE 
Sbjct: 61  KTPLQDLRSEMLGQVTGAGVEDTVD---VGRDDKGIVLNLA---SGTMFKPGSAEVRPEI 114

Query: 249 IVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304
           + ++++I   L     +   I I+GHTD +P R      NW LS  RA S  +V+ + G+
Sbjct: 115 LPLMKEISATLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGI 174

Query: 305 SEDRISKISGFAHHRLKIA--SD-----PMNSA-NRRIDILVEDR 341
             +R+ K++  A    ++   SD     P N A NRR++I +  R
Sbjct: 175 PTNRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRVEIHIYPR 218


>gi|298529615|ref|ZP_07017018.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511051|gb|EFI34954.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 251

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292
           +FD       PE   +LQ + ++   HS + I+I GHTD  P R   R  DNW +S  RA
Sbjct: 139 LFDLGEVELRPEGEELLQDMRDIFNRHSEQRINIEGHTDNIPPREGGRFEDNWEISSLRA 198

Query: 293 YSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSA-NRRIDILVE 339
            +  + L + G+   R++  +G+A    L   +   N A NRR++ ++E
Sbjct: 199 LNTLRFLKQEGIDPGRMTA-TGYADLQPLYPNTTEGNRARNRRVEFVLE 246


>gi|254457990|ref|ZP_05071417.1| OmpA/MotB [Campylobacterales bacterium GD 1]
 gi|207085383|gb|EDZ62668.1| OmpA/MotB [Campylobacterales bacterium GD 1]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 11/105 (10%)

Query: 240 SSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTD-ASPFRN-IARDNWRLSLDRAYS 294
           S++I   + ++ L+++    E L +S +V S++GHTD   P  N + +DNW LS  RA S
Sbjct: 94  SATIENEDALLFLKRVALIVEELPNSMQV-SVQGHTDNQGPGNNSVFKDNWELSSARAIS 152

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
             Q L+   V   RIS  SGFA ++  +A++   +    NRR+++
Sbjct: 153 VLQELLLDSVDPKRISA-SGFAEYK-PLATNVTEAGREKNRRVEL 195


>gi|304407655|ref|ZP_07389306.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343138|gb|EFM08981.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNT 234
           PP  K      + K++ Q+L + + + +   + +N ++  +F T    G+ I + DQ   
Sbjct: 87  PPEEKPNAALEEEKRKNQEL-ENVFAIIQAYIKNNKLEEKVFVTNEEQGVSIRLSDQF-- 143

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRA 292
            +FD   +        +L K+  +       ISI GHTD  P +     RDNW LS  R+
Sbjct: 144 -LFDLGKADLKKAARPILDKLSSLFVKLDHPISIEGHTDNLPIQPGGEFRDNWALSAGRS 202

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
            S  +   +    E    +I+G+   R  IA   +D   S NRR++I +
Sbjct: 203 LSVLRYFTEIAQLEPTKFQIAGYGDTR-PIAPNTTDANRSRNRRVEITI 250



 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK--NLMTASKG 82
           T +N   W I YAD +T+LM FF++++ ++  D    + + Q     F K  +++    G
Sbjct: 12  TADNQDRWLITYADLITLLMIFFVILYAMSQVDSKKYEVLAQSLQFEFRKADSVIEGGNG 71

Query: 83  IFDEQNP-----PERSSQNKIDLSIDEHITKN 109
           +    +P     P +  + K + +++E   KN
Sbjct: 72  VTGALDPSIKPAPVKPPEEKPNAALEEEKRKN 103


>gi|254500358|ref|ZP_05112509.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222436429|gb|EEE43108.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 226 ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-------VISIRGHTD 273
           IS++  R    +  +FD  S    PE    L K+ E +L  S +       V+ + GHTD
Sbjct: 214 ISVVGDRFVFQSEVLFDSGSEDINPEGQQELDKLAEAILELSGQIPDEINWVLRVDGHTD 273

Query: 274 ASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA 330
           A P     R  +NW LS  RA S  + L++ GV   R+   +GF   + L+ +  P   A
Sbjct: 274 ARPLSGTGRLRNNWELSAARAISVVRYLIEKGVDPKRLVA-AGFGEFQPLEESETPDALA 332

Query: 331 -NRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 333 KNRRIELKLTER 344


>gi|150019639|ref|YP_001311893.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906104|gb|ABR36937.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G+ ISI D     +F+   +  L +   +L KI  +L      I + G+TD  P  N   
Sbjct: 116 GLAISIQD---VVLFNSGEADVLKDVSQLLLKISHMLYGLDNEIKVAGYTDNVPINNGKF 172

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           R NW LS  RA +    ++ + G+++++IS I  +  H  K   A++   + NRR++I V
Sbjct: 173 RSNWDLSAMRAINVLNYMVSTGGINQEKIS-IQAYGEHMPKASNATEDGRAKNRRVEIFV 231


>gi|302392384|ref|YP_003828204.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204461|gb|ADL13139.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 31/197 (15%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSK--EKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           KG     S+DL  +  ++EN  +P L++  +KI +  +++ L+D  K             
Sbjct: 62  KGGKTISSSDLITAGVRDENLGMPELNRINQKITSYLQEQELEDEIK------------- 108

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
                  E T  G+ I    +    +FD   +    +   +L KI  +++     I + G
Sbjct: 109 ------VEMTERGLTIRFTGK---VLFDIGRATIKEDAYSILDKISGIISEVPNQIMVEG 159

Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR-LKIASDP 326
           HTD  P  N +R   NW LS  RA    +  + ++ ++  ++S  +G++ ++ +K    P
Sbjct: 160 HTDNLPISN-SRFPSNWELSTARATEVVKYFIEENSITPAKLSA-AGYSKYKPVKPNDSP 217

Query: 327 MNSA-NRRIDILVEDRQ 342
            N A NRR+D+++  R+
Sbjct: 218 ENRALNRRVDVILLKRE 234


>gi|94969959|ref|YP_592007.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552009|gb|ABF41933.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V   TT  G++IS+   +    FD  S+   P +I    +I  +L      + + GHTD 
Sbjct: 129 VTLRTTSDGLVISL---QEIGFFDSGSAKLRPSSISAFGRIASILREKQCTVRVEGHTDP 185

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSA 330
            P        NW LS  RA    + L++  G++   +S   G+A       +D     + 
Sbjct: 186 MPIHTAQYASNWELSTARATGIVKRLIQEYGINPGDLSA-GGYAEFHPVGPNDTAEGRAQ 244

Query: 331 NRRIDILVEDRQG 343
           NRR+D+++   QG
Sbjct: 245 NRRVDLVILSMQG 257



 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 14/67 (20%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
          W + YADF+T+L AFF+V++  + TD         AIEQ F   G              N
Sbjct: 18 WLVSYADFITLLFAFFVVLYASSQTDQKRAAKISSAIEQAFEQLG----------LGTSN 67

Query: 89 PPERSSQ 95
          PP  +S+
Sbjct: 68 PPGNTSR 74


>gi|126173599|ref|YP_001049748.1| flagellar motor protein MotB [Shewanella baltica OS155]
 gi|152999879|ref|YP_001365560.1| flagellar motor protein MotB [Shewanella baltica OS185]
 gi|160874504|ref|YP_001553820.1| flagellar motor protein MotB [Shewanella baltica OS195]
 gi|217974157|ref|YP_002358908.1| flagellar motor protein MotB [Shewanella baltica OS223]
 gi|304409470|ref|ZP_07391090.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307303828|ref|ZP_07583581.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|125996804|gb|ABN60879.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|151364497|gb|ABS07497.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|160860026|gb|ABX48560.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|217499292|gb|ACK47485.1| OmpA/MotB domain protein [Shewanella baltica OS223]
 gi|304351988|gb|EFM16386.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306912726|gb|EFN43149.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|315266742|gb|ADT93595.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 310

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 133/329 (40%), Gaps = 46/329 (13%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +  P     W   +AD M++LM FF+++   +  D    K I           M  
Sbjct: 3   KAKCNCPPAGAPMWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQI--------AGSMKY 54

Query: 80  SKGIFDEQNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
           + G+           QNK+++  I +  +  +++ + G         R +     + N Q
Sbjct: 55  AFGV-----------QNKVEVKDIPKGTSVIALEFRPG---------RPDPTPIEIINQQ 94

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--- 195
            +E  +  L  D + G+D       ++S ++          +            QD    
Sbjct: 95  TNEMTEPVL--DYQAGEDDSAGGVQQQSGSQRGGEATATAQEVADAVKAEAAAAQDKINQ 152

Query: 196 -AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V++ 
Sbjct: 153 EVKKMAQELNKEITDGAIE---IESLGQQIIIRI---REKGAFASGSGFLQPRFKPVVRS 206

Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312
           +GE+L     +I++ G+TD     + +   NW LS  RA + A++++   G    R+ K+
Sbjct: 207 VGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KV 265

Query: 313 SGFAHHRLKIASD-PMNSA-NRRIDILVE 339
            G A +   + +D P N A NRR++I +E
Sbjct: 266 VGMASNNPIVPNDSPENRARNRRVEIAIE 294


>gi|257457608|ref|ZP_05622775.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580]
 gi|257444994|gb|EEV20070.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 20/172 (11%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +P + K K+L    KK +   A +I +    + +D             GI+IS+    ++
Sbjct: 77  MPAMEKGKMLGTALKKAVSIFAPEIKTNKIAVTSD-----------ERGIVISL--AADS 123

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS-PFRNIARDNWRLSLD 290
                S+ + + E+   L +I + L+    +     I GHTD+S         NW LS  
Sbjct: 124 FFARNSAELNIEESRETLLRIAQFLSDKELAARRFRIEGHTDSSDALSGKWTSNWELSAA 183

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           RA +    L   G  ED+ S I+G+A  R   +++     + NRR+DI++ D
Sbjct: 184 RAINVLHNLTDFGAQEDKFS-IAGYADTRPVYSNETAEGRAYNRRVDIIILD 234


>gi|171318547|ref|ZP_02907697.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
 gi|171096248|gb|EDT41156.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+  LP  + V+++IG+ L      + + GHTD  P       NW+LSLDRA S 
Sbjct: 350 LFASGSARVLPSQVSVIRRIGDALRDVPGRVIVVGHTDNQPPSPGKPSNWQLSLDRAGSV 409

Query: 296 YQVL 299
            Q+L
Sbjct: 410 VQLL 413


>gi|196039232|ref|ZP_03106538.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|218905736|ref|YP_002453570.1| chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225866485|ref|YP_002751863.1| chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|196029859|gb|EDX68460.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|218538809|gb|ACK91207.1| chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225788965|gb|ACO29182.1| chemotaxis protein MotB [Bacillus cereus 03BB102]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|163942243|ref|YP_001647127.1| flagellar motor protein MotB [Bacillus weihenstephanensis KBAB4]
 gi|163864440|gb|ABY45499.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 134 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDNVPIS 190

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334
           N     NW LS  RA +  QVL+++  +  ++ S + G+  +R    +D P   A NRR+
Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTPEGKAKNRRV 249

Query: 335 DILV 338
           ++ +
Sbjct: 250 EVFI 253


>gi|149191103|ref|ZP_01869362.1| flagellar motor protein MotB [Vibrio shilonii AK1]
 gi|148835031|gb|EDL52009.1| flagellar motor protein MotB [Vibrio shilonii AK1]
          Length = 294

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 135/323 (41%), Gaps = 73/323 (22%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQNP 89
           +AD M++LM FF+++   +  D    K I       FG +N +      KG  I  ++  
Sbjct: 4   FADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFR 63

Query: 90  PERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC-KNS 146
           P R     ID+ + +   IT+ +++   G +++    QR +     ++  Q ++   KN 
Sbjct: 64  PGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGNQRDDGK---MTGGQTADRTQKNQ 120

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           +   S +              +++EN  L  L  E+I+    KK LQ   K+       +
Sbjct: 121 IGTASAQ--------------SEQENEDLDKL--EEII----KKALQQEIKQ-----GAV 155

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
             DN+ + ++      G             F + S+   P+   +++++ +++      +
Sbjct: 156 EVDNLGQQLVIRIQEKG------------AFPEGSAFLQPKFRPLVRQVADLVKDIPGQV 203

Query: 267 SIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-- 323
            + GHTD  P    + R NW LS  RA S  Q           + K+ GF+H RL++   
Sbjct: 204 RVSGHTDNLPLDSELYRSNWDLSSQRAVSVAQ----------EMEKVKGFSHQRLRVLGV 253

Query: 324 --SDPMN--------SANRRIDI 336
             ++P+         + NRR++I
Sbjct: 254 ADTEPLGPNDTERQRARNRRVEI 276


>gi|311696643|gb|ADP99516.1| flagellar motor protein MotB [marine bacterium HP15]
          Length = 277

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS-AYQVLMKSG 303
           PE I +++++  VL+  T  + + G+TD  P   +  R NW LS  RA S  ++++M   
Sbjct: 162 PEMIPIIERVVNVLSACTGDVLVSGYTDDRPISSDRYRSNWDLSAARAVSVVHELVMNRQ 221

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           V  DR+        + L     P N A NRR++I +
Sbjct: 222 VPADRVVAAGRAETNPLAPNDSPENRALNRRVEIAI 257


>gi|228941688|ref|ZP_04104235.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228817900|gb|EEM63978.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 21  FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 77

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 78  NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 136

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 137 KNRRVEVFI 145


>gi|327395890|dbj|BAK13312.1| inner membrane lipoprotein YiaD precursor [Pantoea ananatis
           AJ13355]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           +KG     TR G  I +++  N   FD SSS   P     L  +  VL  +    +++ G
Sbjct: 109 MKGTGVSVTRQGDNI-VLNMPNNVTFDSSSSSLKPAGANTLTGVAMVLKEYPKTAVNVVG 167

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
           HTD++  R +   N RLS  RA S    L+  GV+ DR+ ++ +G        +++   +
Sbjct: 168 HTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLHTRGAGPDSPVATNSTEAGKA 224

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 225 QNRRVEI 231


>gi|78777214|ref|YP_393529.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
 gi|78497754|gb|ABB44294.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
          Length = 240

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 255 IGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IGE+   +T  +S+ GHTD      +   +DNW LS  RA S  Q L+  GV   RIS  
Sbjct: 134 IGELPNETT--LSVCGHTDDQGPSVKGPYKDNWELSSARAISVLQELLLDGVDPKRISA- 190

Query: 313 SGFAHHRLKI--ASDPMNSANRRIDI 336
           +G+A    K   A++     NRR+++
Sbjct: 191 AGYAEFSPKATNATESGREQNRRVEL 216


>gi|88859188|ref|ZP_01133829.1| flagellar motor protein [Pseudoalteromonas tunicata D2]
 gi|88819414|gb|EAR29228.1| flagellar motor protein [Pseudoalteromonas tunicata D2]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++++ +L KKI+  L   + D  ++    E+    I+I I   R    F   S+   P+ 
Sbjct: 129 QEQVNELVKKIAQQLEEQIQDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPQF 182

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSE 306
             ++QKI ++L      I++ GHTD     N +  +NW LS  R+ +    + K SG  +
Sbjct: 183 KPIIQKIADLLKDVPGEITVSGHTDDYQVSNELYFNNWDLSAKRSVAVASEMQKVSGFDK 242

Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           +R+  I G A  R  + ++   S   NRR++I +
Sbjct: 243 NRMVVI-GHADTRPLVPNEDSESRKRNRRVEISI 275


>gi|300023960|ref|YP_003756571.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525781|gb|ADJ24250.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEV-------ISIRGHTDASPFRNIAR-DNWR 286
           +F   S+   PE +  + +I E +L    E+       + I GHTDA P  N     NW 
Sbjct: 227 LFSSGSASLTPEGMAAMDQIAEAILELQKEIPGDIDWALQINGHTDARPISNPQYPSNWE 286

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           LS  RA S  + L+  GV  DR+   +G+   +   AS+   +   NRRI++ +  R
Sbjct: 287 LSTARAASVVKYLVLRGVPADRLV-AAGYGEFQPVDASNTEEAYQRNRRIELKLTSR 342


>gi|260427879|ref|ZP_05781858.1| OmpA/MotB domain protein [Citreicella sp. SE45]
 gi|260422371|gb|EEX15622.1| OmpA/MotB domain protein [Citreicella sp. SE45]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
           +I + GHTD  P R  AR  DNW LS  RA S  + L+   G+  DR+S  +GF  ++  
Sbjct: 547 IIRVDGHTDDIPLRPGARFSDNWELSQARALSVVRYLVDFLGIPPDRLSA-NGFGQYQ-- 603

Query: 322 IASDPMNSA-----NRRIDILVEDR 341
              DP ++A     NRRI++ + +R
Sbjct: 604 -PIDPSDTADARAQNRRIELKLTER 627


>gi|118479664|ref|YP_896815.1| flagellar motor protein MotB [Bacillus thuringiensis str. Al Hakam]
 gi|196044798|ref|ZP_03112032.1| chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|118418889|gb|ABK87308.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam]
 gi|196024286|gb|EDX62959.1| chemotaxis protein MotB [Bacillus cereus 03BB108]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|213963452|ref|ZP_03391706.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213953860|gb|EEB65188.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 454

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD + +   PE+  VL  I  VL  +     SI G+TD S   N A+ N +LS DRA
Sbjct: 349 TILFDVNKATIRPESATVLNNIVNVLNKYKNAKFSIEGYTDTS--GNKAK-NQKLSEDRA 405

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
           YS    L+  G+ + R++   GF   +  IAS+        NRR++I
Sbjct: 406 YSVKAYLIDKGIDQARLT-AKGFGPEK-PIASNKTKKGRELNRRVEI 450


>gi|86147426|ref|ZP_01065738.1| flagellar motor protein [Vibrio sp. MED222]
 gi|85834719|gb|EAQ52865.1| flagellar motor protein [Vibrio sp. MED222]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F   S+   P+   +++++ E++     ++ I GHTD       + R NW 
Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334
           LS  RA S  Q           + K+ GF+H RL++     ++P+         S NRR+
Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295

Query: 335 DI 336
           +I
Sbjct: 296 EI 297


>gi|83311658|ref|YP_421922.1| flagellar motor protein [Magnetospirillum magneticum AMB-1]
 gi|82946499|dbj|BAE51363.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  LQDL  ++   ++G   ++ V          GI++++    +  MF   S+   PE 
Sbjct: 63  KTPLQDLRSEVLGQVAGAGVEDTVD---VGRDDKGIVLNLA---SGTMFKPGSAEVRPEI 116

Query: 249 IVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304
           + ++++I   L     +   I I+GHTD +P R      NW LS  RA S  +V+ + G+
Sbjct: 117 LPLMKEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGI 176

Query: 305 SEDRISKISGFAHHRLKIA--SD-----PMNSA-NRRIDILVEDR 341
              R+ K++  A    ++   SD     P N A NRR++I +  R
Sbjct: 177 PTSRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRVEIHIYPR 220


>gi|294085848|ref|YP_003552608.1| flagellar motor protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665423|gb|ADE40524.1| flagellar motor protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 265 VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322
           V+ + GHTD  P R     DNW LS +RA S  + L+  G+  +R++  +G+  H+  I 
Sbjct: 307 VLQVDGHTDDIPIRAGRYADNWDLSTERALSVVRFLISQGLPPNRLAA-TGYGEHQPLIN 365

Query: 323 -ASDPMNSANRRIDILVEDR 341
             S+     NRRI++ +  R
Sbjct: 366 ENSEDARQKNRRIELKITQR 385


>gi|298486507|ref|ZP_07004567.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158984|gb|EFI00045.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 268

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 19/175 (10%)

Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M   ++RLQ     AK  S+   G  + D I+     ET R G+++++ D  
Sbjct: 98  LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 154

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 155 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 209

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G++     +   AS+   + NRR++I+  D +G
Sbjct: 210 AQAVADVLMDLGVDEKRI-HVEGYSQQ-FPVNANASERGRAQNRRVEIVFSDEKG 262


>gi|218710365|ref|YP_002417986.1| flagellar motor protein MotB [Vibrio splendidus LGP32]
 gi|218323384|emb|CAV19561.1| Flagellar motor protein [Vibrio splendidus LGP32]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F   S+   P+   +++++ E++     ++ I GHTD       + R NW 
Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334
           LS  RA S  Q           + K+ GF+H RL++     ++P+         S NRR+
Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295

Query: 335 DI 336
           +I
Sbjct: 296 EI 297


>gi|315649793|ref|ZP_07902876.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
 gi|315274767|gb|EFU38148.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 26/202 (12%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T D+E  K+    T + +  +KEE+    PL++ ++    +++ L +    I       V
Sbjct: 78  TADTENHKNPPPQTAVTE--DKEEDNGEAPLTERELAFRAQEEELANFMGLIQQ----YV 131

Query: 208 ADNIVKGVLFETTRT-GILISIIDQRNTPMFD------KSSSIPLPETIVVLQKIGEVLA 260
            DN ++  +F +    GI I++ D+    +FD      KS + P      VL K+  +  
Sbjct: 132 KDNQLEEDIFISDEPQGIAITLSDRF---LFDVGKAELKSGAAP------VLGKLASLFG 182

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +SI GHTD  P    +  +DNW LS  RA S  +  ++    +    + +G+A  
Sbjct: 183 DLNTTVSIEGHTDNVPIGRHSSYKDNWELSGARAMSVLRFFLEDSKLDPAGFQYAGYADT 242

Query: 319 RLKI--ASDPMNSANRRIDILV 338
           R     A+      NRR++I V
Sbjct: 243 RPAADNATPEGKQKNRRVEITV 264



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84
          W I YAD +T+L+ FF+VM+ ++  D +  K + Q        G +++    GI      
Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81

Query: 85 -DEQNPPERSS 94
           + +NPP +++
Sbjct: 82 ENHKNPPPQTA 92


>gi|157889011|dbj|BAF80958.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G+VL  + +  +I  GHTD++  +     N +LSL+RA +  + L KSGV
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           ++++I+   G+   + K ++D     + NRR++
Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|158422120|ref|YP_001523412.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
 gi|158329009|dbj|BAF86494.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--------IRGHTDASPFRNIA-RDNWR 286
            FD+ S+ P PE +  L K+   +      I         I GHTD+ P        NW 
Sbjct: 224 FFDRGSATPRPEALAELDKLASAILELERQIPPDINWALRIDGHTDSRPISTPQFPSNWE 283

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341
           LS  RA +  Q L+  GV + R    +GF  ++      SD   + NRRI++ + +R
Sbjct: 284 LSAARAIAVAQYLISKGV-QPRHLIAAGFGEYQPIDTGTSDESMARNRRIELKLTER 339


>gi|315127296|ref|YP_004069299.1| chemotaxis protein [Pseudoalteromonas sp. SM9913]
 gi|315015810|gb|ADT69148.1| putative chemotaxis protein [Pseudoalteromonas sp. SM9913]
          Length = 320

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286
           +I+  +  +F   S++   +   +++KI  ++A     I +RG+TD    RN I R NW 
Sbjct: 153 VIELNSGLLFASGSAVAHNKAKEIVKKIEAIIASVDNYIRVRGYTDNETIRNEIFRSNWE 212

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LS+ RA S    L + G+   R++ I G+  +
Sbjct: 213 LSVARATSILVELERLGIESARMA-IEGYGQY 243



 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKK----AIEQYFNPFGKNLMTASKGI 83
          W + YAD+MT++ AFF+V++ I    +D  K    ++E  F+   K       G+
Sbjct: 19 WLVSYADYMTIMFAFFVVLYAIAINKEDNIKVLSDSLEHVFDKSAKQYSQQGNGV 73


>gi|224372468|ref|YP_002606840.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH]
 gi|223589113|gb|ACM92849.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 27/167 (16%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP------------- 235
           K  + D   K  +TL+G+  D  V G   +  + G+   +    NTP             
Sbjct: 207 KDGVYDSLDKCPNTLAGVSVD--VNGCPLDDDQDGVPNYLDKCSNTPKGVVVDEHGCAMT 264

Query: 236 -----MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
                 FD  S+   P+ +  +++  E L  +      I+G+TD+   +  A  N +LS 
Sbjct: 265 YDFGITFDNDSADIKPQFMKKIEEFAEFLKQNPAYKAEIQGYTDS---KGSAEYNQKLSE 321

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334
            RA + Y+VL+K G+S+DR+S   G+       ++D P   A NRR+
Sbjct: 322 RRAKAVYEVLIKQGISKDRLS-YKGYGEANPVASNDTPDGKAQNRRV 367


>gi|228987761|ref|ZP_04147872.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772035|gb|EEM20490.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN-- 328
             P  N     NW LS  RA +  QVL+++   E +  K S  G+  +R    +D     
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRAIAPNDTQEGK 216

Query: 329 SANRRIDILV 338
           + NRR+++ +
Sbjct: 217 AKNRRVEVFI 226


>gi|209886430|ref|YP_002290287.1| flagellar motor protein [Oligotropha carboxidovorans OM5]
 gi|209874626|gb|ACI94422.1| flagellar motor protein [Oligotropha carboxidovorans OM5]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 236 MFDKSSSIPLPE----------TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
            FD  SS  LPE           I  L+K  ++ A    V+ + GHTD  P  +   + N
Sbjct: 222 FFDSGSSGLLPEGRGELDQLATAITELEK--KIPAEIPWVLRVDGHTDVRPINSPQFKSN 279

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341
           W LS  RA S  Q L+  GVS  R+   +GF   + L  A +D     NRRI++ + +R
Sbjct: 280 WDLSAARAISVVQYLISRGVSPQRLVA-AGFGEFQPLDTATTDDAYKRNRRIELKLTER 337


>gi|289624411|ref|ZP_06457365.1| ompA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646675|ref|ZP_06478018.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867435|gb|EGH02144.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330987431|gb|EGH85534.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 271

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%)

Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M   ++RLQ     AK  S+   G  + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+      +   AS+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265


>gi|244538688|dbj|BAH82838.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G+VL  + +  +I  GHTD++  +     N +LSL+RA +  + L KSGV
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           ++++I+   G+   + K ++D     + NRR++
Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|229158119|ref|ZP_04286188.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
 gi|228625348|gb|EEK82106.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTD 158

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN-- 328
             P  N     NW LS  RA +  QVL+++   E +  K S  G+  +R    +D     
Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRAIAPNDTQEGK 216

Query: 329 SANRRIDILV 338
           + NRR+++ +
Sbjct: 217 AKNRRVEVFI 226


>gi|87119461|ref|ZP_01075358.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86164937|gb|EAQ66205.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 281

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           E + VL  I EVL   +  I + GHTD  P   N    NW+LS  RA S    L+  G++
Sbjct: 174 EAVAVLMSISEVLKRYSYPIVVEGHTDNLPVSSNKYTSNWQLSSARASSVVDELVNGGIN 233

Query: 306 EDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              I+ + G +  + K+  ++D   + NRR+ +
Sbjct: 234 PQLIA-VLGLSSEKPKVRNSNDFSRARNRRVTL 265



 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMW-----------IINATDDDTKKAIEQYFNPF 72
           +DT  N   W + YADF+T+L AFF+ ++           ++  T +   +A++    P 
Sbjct: 21  NDTNQNKQRWILSYADFITLLFAFFVALYSISLKNQGDSKLLTETLEGVMQAVQLSVQPI 80

Query: 73  GKNLMTASKG---IFDEQNP-----PERSSQNKIDLSIDEHI 106
               +T  K     F E  P     P  S Q  I   +D+ +
Sbjct: 81  NIGKVTTGKAEDEAFQELTPDRGSDPSPSPQQNIQTVVDKKL 122


>gi|84394351|ref|ZP_00993072.1| flagellar motor protein [Vibrio splendidus 12B01]
 gi|84375010|gb|EAP91936.1| flagellar motor protein [Vibrio splendidus 12B01]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F   S+   P+   +++++ E++     ++ I GHTD       + R NW 
Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334
           LS  RA S  Q           + K+ GF+H RL++     ++P+         S NRR+
Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295

Query: 335 DI 336
           +I
Sbjct: 296 EI 297


>gi|167034765|ref|YP_001669996.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861253|gb|ABY99660.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 11/151 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQK 254
           AK  S    G   ++ +  +  E T  G+++++ D     +FD  S+ +    +  VL+ 
Sbjct: 122 AKLASVQQQGKWVESQIAALASEQTDRGLVMTLGD----VLFDTGSADLKNSASRTVLKL 177

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  +  +   V+ I G+TD++    +A DN +LS DRA S   +L+  G+ E R+ ++ G
Sbjct: 178 VQFLQLNPRRVVRIEGYTDST---GLAEDNLKLSRDRAQSVADMLVDLGIDEKRL-QVEG 233

Query: 315 FA-HHRLKI-ASDPMNSANRRIDILVEDRQG 343
           +   + ++  AS+   + NRR++I+  D +G
Sbjct: 234 YGDQYPIEANASERGRAQNRRVEIVFSDDKG 264


>gi|257485486|ref|ZP_05639527.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010666|gb|EGH90722.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 271

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%)

Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M   ++RLQ     AK  S+   G  + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 158 --VLFDAGRAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+      +   AS+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265


>gi|242277509|ref|YP_002989638.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120403|gb|ACS78099.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL KI   LA S   + + GH+D  P R+     NW LS  RA +  + L+ +G S+DRI
Sbjct: 140 VLGKIAPTLAKSPYQVVVEGHSDNIPIRSKQFPSNWELSSARASAVARYLLDNGFSKDRI 199

Query: 310 SKISGFAHHRLKIASD-------PMNSA-NRRIDILV 338
            K+ G A       ++       P N   NRR+ +LV
Sbjct: 200 -KVLGMADTAPAYPNEDDNGNAIPANQKRNRRVVLLV 235


>gi|120599624|ref|YP_964198.1| flagellar motor protein MotB [Shewanella sp. W3-18-1]
 gi|146292382|ref|YP_001182806.1| flagellar motor protein MotB [Shewanella putrefaciens CN-32]
 gi|120559717|gb|ABM25644.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145564072|gb|ABP75007.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
 gi|319425682|gb|ADV53756.1| stator-force generator of Na+ coupled flagellar motor, PomB
           [Shewanella putrefaciens 200]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V++ +G
Sbjct: 153 KKMAQELNKEIIDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVG 206

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISG 314
           E+L     VI++ G+TD     + +   NW LS  RA + A++++   G    R+ K+ G
Sbjct: 207 ELLKDVPGVITVAGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KVVG 265

Query: 315 FAHHRLKIASD-PMNSA-NRRIDILVE 339
            A +   + +D P N A NRR++I +E
Sbjct: 266 MASNNPIVPNDSPENRARNRRVEIAIE 292


>gi|172058884|ref|YP_001815344.1| OmpA/MotB domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171991405|gb|ACB62327.1| OmpA/MotB domain protein [Exiguobacterium sibiricum 255-15]
          Length = 257

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           K +  E T  G++ +I   R+  +F  + +    + I + Q +  +L  + +  I + GH
Sbjct: 112 KDIKVEVTNEGLVFNI---RDRALFSPAQADVKGDAIQIAQGMSNLLVKAGQRQIQVSGH 168

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD  P   +    NW LS +RA S  + L ++     +   +SG+  ++  IAS+   S 
Sbjct: 169 TDNIPINTVQYPSNWELSAERAISFMRALQRNPKLTPKRFTVSGYGEYQ-PIASNDTESG 227

Query: 331 ---NRRIDILV 338
              NRR+++L+
Sbjct: 228 RSQNRRVEVLI 238


>gi|327188824|gb|EGE56018.1| putative outer membrane protein (OmpA protein) [Rhizobium etli
           CNPAF512]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDI 336
             D     + NRRI++
Sbjct: 323 PGDAPDARATNRRIEL 338


>gi|148976605|ref|ZP_01813292.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3]
 gi|145963956|gb|EDK29214.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           +I  R    F   S+   P+   +++++ E++     ++ I GHTD       + R NW 
Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334
           LS  RA S  Q           + K+ GF+H RL++     ++P+         S NRR+
Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295

Query: 335 DI 336
           +I
Sbjct: 296 EI 297


>gi|242309734|ref|ZP_04808889.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489]
 gi|239523735|gb|EEQ63601.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDK-SSSIPLPETIVVLQKIGEVLAHSTEVISIR--GH 271
           V FE    GI+I I +     +F+  S+++     I  L++I   L H  + I I+  GH
Sbjct: 112 VEFEEAEKGIIIRIPEDL---LFESGSATLSNSNGITFLKRISLELNHLPKEILIKAIGH 168

Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---P 326
           TD +P +  A   DN  LS+ R  +   +L+  G+ ++RI  I G       IA++    
Sbjct: 169 TDNTPMKKNATFADNLELSIARGVNVANLLISQGIDKERI--IGGGEGEFSPIANNDIPE 226

Query: 327 MNSANRRIDILV 338
           + + NRR+D+ V
Sbjct: 227 LRAKNRRVDLYV 238


>gi|71735961|ref|YP_274192.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556514|gb|AAZ35725.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 271

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%)

Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M   ++RLQ     AK  S+   G  + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+      +   AS+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265


>gi|206603127|gb|EDZ39607.1| Putative flagellar motor protein (OmpA/MotB) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 261

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
           + + VL+KI  +LA +   I + G+TD  P R  +R   NW LS  RA +    L++ G 
Sbjct: 133 KAVPVLRKIAALLARTNHEIRVHGYTDNQPIRT-SRYPSNWALSTMRAVNVLTRLLEYGS 191

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342
            +      +GF   R  IAS+        NRR++IL+ +R+
Sbjct: 192 IDPGRMGAAGFGKFR-PIASNLTPEGREKNRRVEILIMNRE 231


>gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD [Janthinobacterium sp. Marseille]
 gi|151280727|gb|ABR89137.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + K R+  +A+ I   ++ LV+   V+  + +T R G+ + I     + +F    +    
Sbjct: 95  REKARMTSIARDILKAMAPLVSQGKVR--VTQTNR-GVSVEI---NASVLFAPGEAKLNA 148

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++   L+ + +VL      I + GHTD +P  N +   NW LS  RA S  ++ + +GV+
Sbjct: 149 QSEAALRAVAQVLKDVDNDIQVEGHTDNTPINNTMFPSNWELSAVRASSVVRLFLANGVA 208

Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           E R+  +   A+  L + S+        NRR+ +++
Sbjct: 209 EKRLVAMGHGAN--LPVDSNDTTEGRLRNRRVQLMI 242



 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 22/27 (81%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59
          W + YADF+T+L AFF+VM+ I++ ++
Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNE 42


>gi|114320554|ref|YP_742237.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226948|gb|ABI56747.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 266

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L  +  VLA     I + GHTD  P      R NW LS  RA     +L+++   E 
Sbjct: 141 LPILHTVAGVLAGQGGTIRVSGHTDDVPIDTERFRSNWELSTARATEVVHLLLEAAPIEP 200

Query: 308 RISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338
                 G A  R L+  + P N A NRR+D+L+
Sbjct: 201 GRFIAQGHADTRPLRPNTSPENRARNRRVDVLI 233


>gi|330830900|ref|YP_004393852.1| sodium-driven polar flagellar protein [Aeromonas veronii B565]
 gi|328806036|gb|AEB51235.1| Sodium-driven polar flagellar protein [Aeromonas veronii B565]
          Length = 283

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 71/318 (22%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQNP 89
           +AD M++LM FF+++      D    K I    +  FG +N++      KG  +  ++  
Sbjct: 4   FADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMDKAFGVQNILEVKDIPKGTSVIAQEFR 63

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P R     ID  + + I     +L+                 F    S Q+        +
Sbjct: 64  PGRPEPTPIDTVMQQTIDLTQTELE-----------------FLPGESDQAGG------Q 100

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           D   GK     T  +    +E++  L      K LA + K ++QD A +I          
Sbjct: 101 DKSDGKQTGGDTAQDAKKAQEQSNTL-----AKALAEQMKDQIQDGAIEI---------- 145

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
                   E     I+I I   R    F   S+   P+   V++K+  +L      I+I 
Sbjct: 146 --------EALGQQIIIRI---REKASFPAGSAFLQPQFWPVIRKVATLLKDVPGEITIS 194

Query: 270 GHTDASPFRNIA------RDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKI 322
           GHTD     N+A      + NW LS  RA + A+Q+L   G  + R+  + G A  +  +
Sbjct: 195 GHTD-----NVATEDELFQSNWELSSQRAVAVAHQMLKVPGFDQGRLV-VQGMADSQPLV 248

Query: 323 A-SDPMN-SANRRIDILV 338
             + P N   NRR++I +
Sbjct: 249 PNTTPENRRMNRRVEIAI 266


>gi|218662295|ref|ZP_03518225.1| hypothetical protein RetlI_23953 [Rhizobium etli IE4771]
          Length = 223

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 144 VLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 202

Query: 323 ASD--PMNSANRRIDI 336
             D     + NRRI++
Sbjct: 203 PGDTPEARATNRRIEL 218


>gi|331007308|ref|ZP_08330507.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330418870|gb|EGG93337.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 265 VISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +ISI GHTD  P  +   +    NW LS  RA  A + LM+ G+   +   + GFA+ R 
Sbjct: 333 LISIEGHTDHRPIVSTLAEKYPTNWELSAARASFAIRHLMEKGLPAKQFQAV-GFANTR- 390

Query: 321 KIASD---PMNSANRRIDILV 338
            IA D        NRRI+IL+
Sbjct: 391 PIAMDVDYASQKKNRRIEILL 411


>gi|15966529|ref|NP_386882.1| hypothetical protein SMc03992 [Sinorhizobium meliloti 1021]
 gi|15075800|emb|CAC47355.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021]
          Length = 344

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+ A    V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +G
Sbjct: 257 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 315

Query: 315 FAHHRLKIA---SDPMNSANRRIDI 336
           F  ++  IA   S    + NRRI++
Sbjct: 316 FGEYQ-PIAPGESQEARAQNRRIEL 339


>gi|307300434|ref|ZP_07580214.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|307318299|ref|ZP_07597734.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895981|gb|EFN26732.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306904600|gb|EFN35184.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 342

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+ A    V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +G
Sbjct: 255 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 313

Query: 315 FAHHRLKIA---SDPMNSANRRIDI 336
           F  ++  IA   S    + NRRI++
Sbjct: 314 FGEYQ-PIAPGESQEARAQNRRIEL 337


>gi|254706491|ref|ZP_05168319.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 47

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLV 50
          + II+++    D   ++ G WKI YADFMT +MAFFLV
Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLV 47


>gi|330899174|gb|EGH30593.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 271

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    DN +LS DR
Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265


>gi|253681414|ref|ZP_04862211.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873]
 gi|253561126|gb|EES90578.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWR 286
           II+ ++  +FD + +     +  +L KI  +L      I I GHTD  P  N     NW 
Sbjct: 121 IIELKDNILFDSAQAEIKTPSKEILDKISNLLESVPNGIIIEGHTDNVPIHNAKYASNWE 180

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           LS  RA +  +  +++ G++ D+         H ++   +  N A NRR++IL+
Sbjct: 181 LSTQRAVNVLKYFVENKGLAPDKFQAAGYGEFHPIEKNDNYANKAKNRRVNILI 234


>gi|149909329|ref|ZP_01897985.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36]
 gi|149807646|gb|EDM67594.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 124/310 (40%), Gaps = 52/310 (16%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG-------KNLMTASKGIFDEQN 88
           +AD M++LM FF+++   +  D    K I     + FG       KN+   +  I  E  
Sbjct: 4   FADLMSLLMCFFVLLLSFSEMDVVKFKQIAGSMQHAFGVQNQIEVKNIPKGTTVIAQEFR 63

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P  R     I+ +I +H   NS                 E  + +     Q+   KN L 
Sbjct: 64  PG-RPDPTPIE-TIMQHTIDNS-----------------EAELDFKDGEDQNAGGKNKLA 104

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
            DS  GK    ST   +     +N  +   + E + A+      + L ++I S   G+  
Sbjct: 105 EDSNGGKSPETST---RDNTPTQNIEVTEDTSELVKALA-----EALKEEIDS--GGVEV 154

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           +N+ + ++      G             F   S+   P    V+QK+ ++LA    +I+I
Sbjct: 155 ENLGQQIIIRINEKG------------SFPSGSAFLQPRFRPVIQKVAQLLATIPGIITI 202

Query: 269 RGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHT      + + R  W LS  RA S A+++L     +E+R+  + G A  +     + 
Sbjct: 203 AGHTGKEQLHSELYRSKWDLSSQRAVSVAHEMLKVKEFTENRLI-VQGMADTQPLTDDEN 261

Query: 327 MNSANRRIDI 336
               NRR++I
Sbjct: 262 ELRRNRRVEI 271


>gi|330946399|gb|EGH47480.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA    K  S+   G  + D I+     ET R G+++++ D  
Sbjct: 43  LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 99

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    DN +LS DR
Sbjct: 100 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 154

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 155 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 207


>gi|331269325|ref|YP_004395817.1| chemotaxis motB protein [Clostridium botulinum BKT015925]
 gi|329125875|gb|AEB75820.1| chemotaxis motB protein [Clostridium botulinum BKT015925]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286
           II+ ++  +FD + +     +  +L KI  +L      I I GHTD  P  N   + NW 
Sbjct: 121 IIELKDNILFDSAQAEIKAPSKEILDKISRLLESVPNGIIIEGHTDNVPIHNTKYESNWE 180

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           LS  RA +  +  ++S G++ D+         H ++   +  + A NRR++IL+
Sbjct: 181 LSTQRAVNVLKYFVESKGLAPDKFQAAGYGEFHPIEKNDNYADRAKNRRVNILI 234


>gi|83949920|ref|ZP_00958653.1| flagellar motor protein [Roseovarius nubinhibens ISM]
 gi|83837819|gb|EAP77115.1| flagellar motor protein [Roseovarius nubinhibens ISM]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           VI + GHTD  P  N A   DNW LS  RA S  + +++S G+  DR+S  +GF  ++  
Sbjct: 547 VIRVDGHTDDVPIVNSAEFADNWELSQARALSVVRYMIESLGIPPDRLSA-NGFGQYQPV 605

Query: 322 IASDPMN--SANRRIDI 336
              D     + NRRI++
Sbjct: 606 AQGDSAEARAQNRRIEL 622


>gi|114764496|ref|ZP_01443721.1| flagellar motor protein [Pelagibaca bermudensis HTCC2601]
 gi|114543063|gb|EAU46082.1| flagellar motor protein [Roseovarius sp. HTCC2601]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 12/85 (14%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           ++ + GHTD +P R  AR  DNW LS  RA S  + L++  G+   R+S  +GF  ++  
Sbjct: 554 ILRVDGHTDDTPLRPGARFADNWELSQARALSVVRFLVEDMGIPPQRLSA-NGFGEYQ-- 610

Query: 322 IASDPMNS-----ANRRIDILVEDR 341
              DP +S      NRRI++ + +R
Sbjct: 611 -PVDPADSPEARAQNRRIELKLTER 634


>gi|330980720|gb|EGH78823.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 271

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    DN +LS DR
Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265


>gi|289679931|ref|ZP_06500821.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 190

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 20  LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 76

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    DN +LS DR
Sbjct: 77  --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 131

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+          P+N        + NRR++I+  D +G
Sbjct: 132 AQAVADVLMDLGVDEKRI-HVEGYGQEF------PVNANTFERGRAQNRRVEIVFSDEKG 184


>gi|296536082|ref|ZP_06898216.1| OmpA family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263579|gb|EFH10070.1| OmpA family protein [Roseomonas cervicalis ATCC 49957]
          Length = 235

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           ++ + GH D SP R  AR   NW LS  RA +  Q L+  G+  +R++  +   +  +  
Sbjct: 156 ILRVDGHADRSPLRAGARYASNWELSAARAIAVGQFLIGEGLPPNRVAATAFGEYQPIDS 215

Query: 323 ASDPMNSA-NRRIDILVEDR 341
              P   A NRRI++ + DR
Sbjct: 216 GDSPEAFARNRRIELRLTDR 235


>gi|52140989|ref|YP_085838.1| flagellar motor protein MotB [Bacillus cereus E33L]
 gi|51974458|gb|AAU16008.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus E33L]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +D     +
Sbjct: 187 NVPIANSQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245

Query: 330 ANRRIDILV 338
            NRR+++ +
Sbjct: 246 KNRRVEVFI 254


>gi|225849164|ref|YP_002729328.1| chemotaxis protein MotB [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643203|gb|ACN98253.1| chemotaxis protein MotB (Motility protein B) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 265

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  +V   N+   V  E    G+ I I+D     +F+  S     E
Sbjct: 76  KQKREDTKKKIKERVEQIVKKLNLEGKVQVEVIPMGVRIRILDYI---LFNPCSVEIKKE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  + EV+  +   + + GHTD  P     I   NW LS  RA S  + L++S   
Sbjct: 133 YQELLSSVAEVIKEANLPVEVEGHTDNIPPSGNCIYPSNWELSAARAASVVRFLIQSKNL 192

Query: 306 EDRISKISGFAHHRLKIA---SDPMNSANRRIDI 336
              +    G+A  R  IA   S+   S NRRI+I
Sbjct: 193 PPAMFTAVGYADTR-PIAPNTSEIGRSMNRRIEI 225


>gi|226939690|ref|YP_002794763.1| OmpA/MotB [Laribacter hongkongensis HLHK9]
 gi|226714616|gb|ACO73754.1| OmpA/MotB [Laribacter hongkongensis HLHK9]
          Length = 225

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S++  P     + K+ E L  ++   + IRG+TD++     A  N +LSL RA + 
Sbjct: 118 FNLNSAVVKPAFYPTMNKVAETLKQYNQTTLVIRGYTDST---GAAAYNQQLSLKRANAV 174

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
              L+  GV+ +RI  I G      + ++D     + NRR+ I +  +QG
Sbjct: 175 KSYLVGQGVAANRIQTI-GMGESDPRASNDTAQGRAMNRRVSITIVPQQG 223


>gi|126664984|ref|ZP_01735967.1| flagellar motor protein MotD [Marinobacter sp. ELB17]
 gi|126630354|gb|EBA00969.1| flagellar motor protein MotD [Marinobacter sp. ELB17]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           PLS        R + LQ+LA ++    S L+   ++           + +++    N+ +
Sbjct: 93  PLSLPAPDNASRSRALQELAGQLGQEFSALIEGGVIS---LNADDEWLQLNL---PNSLL 146

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294
           F    + P  ++  V++KI  VL  +   I I G TD    R+  R   NW LS  RA  
Sbjct: 147 FGSGDAEPHYDSFAVMEKIAGVLRDTDNAIRIEGFTDNQSIRS-GRFPSNWELSAARASV 205

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
             ++L+  G+   R++ + G+  H+
Sbjct: 206 LVRMLVMDGIDPARLAAV-GYGEHQ 229



 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W I YADF+T+L AFF+VM+ +++ ++   K +         N +T   G+F   N PER
Sbjct: 17 WLISYADFITLLFAFFVVMYSVSSVNEGKYKVL--------SNTLT---GVF---NAPER 62

Query: 93 S 93
          S
Sbjct: 63 S 63


>gi|190893330|ref|YP_001979872.1| outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652]
 gi|190698609|gb|ACE92694.1| probable outer membrane protein (OmpA protein) [Rhizobium etli CIAT
           652]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 264 VLRVDGHTDNVPLVGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDI 336
             D     + NRRI++
Sbjct: 323 PGDAPDARATNRRIEL 338


>gi|120555939|ref|YP_960290.1| hypothetical protein Maqu_3029 [Marinobacter aquaeolei VT8]
 gi|120325788|gb|ABM20103.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 209 DNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           D + KG V F   R GI  +++ + N+          L   I  LQ     L    E++ 
Sbjct: 70  DPLTKGLVTFRDGRIGISGNVLFELNSDQLQAEGEEVLESLIRPLQA---YLEQHDELLM 126

Query: 268 IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + G TD  P    N  +DNW LS  RA +  + L + G+  DR+   +   HH      D
Sbjct: 127 VSGFTDDLPMHPGNRYQDNWGLSAQRALTVTRTLTELGLPNDRVFAAAFGPHHPAVPNVD 186

Query: 326 PMNSA-NRRIDI 336
             + A NRR++I
Sbjct: 187 AESRAQNRRVEI 198


>gi|34558375|ref|NP_908190.1| putative flagellar motor protein [Wolinella succinogenes DSM 1740]
 gi|34484094|emb|CAE11090.1| HYPOTHETICAL PROTEIN-PUTATIVE FLAGELLAR MOTOR PROTEIN [Wolinella
           succinogenes]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           + +RGHTD  P    A +D   L+  RA S  ++L+K G+   RI+ +       L  A 
Sbjct: 165 VEVRGHTDTLPLPAQAPQDKLELTAKRALSVSKLLVKEGIDPKRITTVGRGDQDPLTHAR 224

Query: 325 DP-MNSANRRIDI 336
            P    +NRR+DI
Sbjct: 225 TPEAQESNRRVDI 237


>gi|322383007|ref|ZP_08056837.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153030|gb|EFX45490.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 254

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 186 MKRK-KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSI 243
           M+RK K LQD+ K    T+   + +N ++  +    +  G+ +++ D     +FD   + 
Sbjct: 99  MERKEKELQDILK----TVQAYIEENHLEAQIAVGNSERGVSVTLKDLF---LFDLGKAE 151

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
             PE   VL K+  +       ISI GHTD  P R  +  +DNW LS  R+ S  +    
Sbjct: 152 LKPEAYPVLNKLASLFPTLDTKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTT 211

Query: 302 SGVSEDRISKI--SGFAHHRLKIASDPMN--SANRRIDILV 338
               +   SK   +G+A       +D M   + NRR++I++
Sbjct: 212 KADPKISDSKFMSTGYADTIPVAPNDSMENRAKNRRVEIVI 252



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK---NLMTASKGIFDEQNP 89
          W + YAD +T+L+AFF++M+ ++  D +  + + Q  +   K   ++++ + G+  +  P
Sbjct: 17 WLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNSILSMNSGVSGQNMP 76

Query: 90 PERS 93
          P+ +
Sbjct: 77 PKST 80


>gi|325281257|ref|YP_004253799.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324313066|gb|ADY33619.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 276

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETI 249
           RLQ L   +   L G  +D      L  T + G I +++ D+    +F+  S+    +  
Sbjct: 120 RLQSLLNSVKDALLGFSSDE-----LTVTEKNGKIYVAMSDK---LLFESGSAQVNKQGK 171

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
             L K+ EVL    ++ + I GHTD  P + +  +DNW LS+ RA S  ++L K
Sbjct: 172 EALGKLAEVLKKQHDIDVFIEGHTDNKPIKTVQFKDNWDLSVVRATSVVRILTK 225


>gi|325525466|gb|EGD03280.1| flagellar motor protein MotB [Burkholderia sp. TJI49]
          Length = 109

 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           NW LS DRA ++ + L+  G+ E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 1   NWELSADRANASRRELIAGGMDEAKVMRVIGLASTQNLNKADPLDPENRRISVIVLNRK 59


>gi|260062810|ref|YP_003195890.1| putative flagellar motor protein MotB [Robiginitalea biformata
           HTCC2501]
 gi|88784378|gb|EAR15548.1| putative flagellar motor protein MotB [Robiginitalea biformata
           HTCC2501]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           +TN  +     E N F  +N+Q+  +   +LT  + KG +     +LEKS+         
Sbjct: 53  ATNDARLQTLEEQNAFLKANNQELINNMGNLTTLTAKGAE-----NLEKSLES------- 100

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---------FETTRTGILIS 227
              KEK L +   ++LQD   +  S    LV    +KGVL             +  + +S
Sbjct: 101 --LKEKDLTI---RKLQDAVTRRDSVNLALVQS--LKGVLGNLDDEDIEISVEKGVVFVS 153

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNW 285
           I D+    +F   S         VL K+ +V+ +  +    + GHTD  P+R+ +  DNW
Sbjct: 154 ISDKL---LFSSGSYNVTNAAKNVLGKVAQVVNNKPDFEFMVEGHTDNVPYRSGVLLDNW 210

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
            LS  RA S  ++L    GV   R++      +  L       N A NRR  I+V
Sbjct: 211 DLSAKRATSVVRILQNDFGVDPARMTAAGRSYYVPLASNDTAANRAKNRRTRIVV 265


>gi|295085810|emb|CBK67333.1| Flagellar motor protein [Bacteroides xylanisolvens XB1A]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++ +T  K   Q L NN   + N Q S   KN L RD+ K  +  +      ++N  E  
Sbjct: 4   EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 61

Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            L  L  +K   +  ++R    LQD+ K  +  +  L+++  VK  L   +   + +   
Sbjct: 62  KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 119

Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281
           D +      +  +F   S+         L K+ EVL   T++ + I GHTD  P   +  
Sbjct: 120 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 179

Query: 282 RDNWRLSLDRAYSAYQVLMKS 302
           +DNW LS+ RA S  ++L+K+
Sbjct: 180 KDNWDLSVIRATSVVRILIKN 200


>gi|326404482|ref|YP_004284564.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301]
 gi|325051344|dbj|BAJ81682.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301]
          Length = 456

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           L G +   I KG   E    G +   +I   NT +F   S+      + ++ KIG+ LA 
Sbjct: 315 LRGFLQPEITKG---EVAVLGTVNAPVIRINNTGLFASGSATVESTALPLISKIGQALAR 371

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + G+TD+ P   +   +N  LS DRA +A  VL ++   + RI+     A   +
Sbjct: 372 EKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGAADPI 431

Query: 321 KIASDPMNSA-NRRIDILV 338
              + P   A NRRI+I++
Sbjct: 432 ATNATPQGRALNRRIEIVL 450


>gi|256425427|ref|YP_003126080.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040335|gb|ACU63879.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 285

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF-RNIARD 283
           +  ID  +  +F+  S    P+   VL K+ +VL +  ++   + GHTD++P+ + +  D
Sbjct: 154 VVYIDISDKMLFESGSYDVTPKAKEVLGKVAKVLLNQPDIEFMVEGHTDSNPYKKGVLLD 213

Query: 284 NWRLSLDRAYSAYQVL 299
           NW LS+ RA +  +VL
Sbjct: 214 NWDLSVKRATAVTRVL 229


>gi|294644876|ref|ZP_06722614.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294808230|ref|ZP_06766993.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292639770|gb|EFF58050.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294444557|gb|EFG13261.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++ +T  K   Q L NN   + N Q S   KN L RD+ K  +  +      ++N  E  
Sbjct: 4   EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 61

Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            L  L  +K   +  ++R    LQD+ K  +  +  L+++  VK  L   +   + +   
Sbjct: 62  KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 119

Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281
           D +      +  +F   S+         L K+ EVL   T++ + I GHTD  P   +  
Sbjct: 120 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 179

Query: 282 RDNWRLSLDRAYSAYQVLMKS 302
           +DNW LS+ RA S  ++L+K+
Sbjct: 180 KDNWDLSVIRATSVVRILIKN 200


>gi|297583574|ref|YP_003699354.1| OmpA/MotB domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142031|gb|ADH98788.1| OmpA/MotB domain protein [Bacillus selenitireducens MLS10]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G+++ + +Q    +F+ + +  LP+    L+K+G ++     ++ + GHTD+ P   +  
Sbjct: 130 GVVLVLQEQA---LFETARAEILPQAEPFLEKVGTLVTTVPNMVKVEGHTDSRPINTVQF 186

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SANRRIDILVE 339
             NW LS  RA S  + ++ +   ++R     G+   R +   + P N   NRR+ I++ 
Sbjct: 187 PSNWELSGARASSVIRFILSNFDVDERRFLAVGYGETRPVAPNTTPDNLQQNRRVVIVIS 246

Query: 340 D 340
           D
Sbjct: 247 D 247


>gi|126663141|ref|ZP_01734139.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria
           bacterium BAL38]
 gi|126624799|gb|EAZ95489.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria
           bacterium BAL38]
          Length = 520

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    E+ + L KI EVL ++  + I+I  HTD+   +     N +LS  RA +A
Sbjct: 416 FDFNKSTVKKESELSLNKIVEVLTNNANMSITINAHTDS---KGSEAYNQKLSESRAKAA 472

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL----KIASDPMNSANRRIDILV 338
           YQ L+K G+   +++   G+    L    +  +   + ANRRI+  +
Sbjct: 473 YQYLLKKGIPASQLT-YKGYGESELLEKCEKCTASQDQANRRIEFKI 518


>gi|134292850|ref|YP_001116586.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134136007|gb|ABO57121.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LP+   VL +I   L+ H++  I + GHTD  P  N   + NW LS  RA 
Sbjct: 119 LFNVGDARLLPDAAPVLTQIARALSEHASGDILVEGHTDNVPIANAKYESNWELSSARAG 178

Query: 294 SAYQVLMKSGVSEDRISKIS 313
           S  + L + GV+  R++ I 
Sbjct: 179 SVVRYLAERGVAPHRLAAIG 198


>gi|255534563|ref|YP_003094934.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340759|gb|ACU06872.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium
           3519-10]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L+ K+  +L  +  D++   VL    +  ++IS+ D+    ++       +P    VL K
Sbjct: 141 LSNKLKRSLDNIADDDVQVKVL----KGVVMISLSDKM---LYKTGDYNVMPAAQEVLGK 193

Query: 255 IGEVLA-HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310
           + +V+  + T  + I G+TD  P    N+ +DNW LS  RA S  ++L  K GV+  RI+
Sbjct: 194 VAQVINDYDTYSVLIEGNTDNVPLSSANLPKDNWDLSALRATSMAKILQTKFGVNPARIT 253

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
              G + +  K   AS    + NRR +I++
Sbjct: 254 A-GGRSEYNPKTTNASVSGRAENRRTEIII 282


>gi|284040562|ref|YP_003390492.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819855|gb|ADB41693.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273
           V  E  +  + +SI D+    +F   S    P+   VL K+ +V+  H    I + GHTD
Sbjct: 150 VQVEVKKGVVYVSISDK---LLFKSGSYDITPKAETVLGKVAKVVNDHKDLDILVEGHTD 206

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           A P    A +DNW LS  RA S  + L  K GV+ +R++     A  R + A    N+  
Sbjct: 207 AVPISTPAIKDNWDLSALRATSVVRTLQAKFGVAPERLT-----AGGRSEFAPKDDNTTA 261

Query: 331 -----NRRIDILV 338
                NRR +I++
Sbjct: 262 VGRQQNRRTEIII 274


>gi|301056021|ref|YP_003794232.1| motility protein B [Bacillus anthracis CI]
 gi|300378190|gb|ADK07094.1| motility protein B [Bacillus cereus biovar anthracis str. CI]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMN 328
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R  IA   +    
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYR-SIAPNNTQEGK 244

Query: 329 SANRRIDILV 338
           + NRR+++ +
Sbjct: 245 AKNRRVEVFI 254


>gi|49478673|ref|YP_038563.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034432|ref|ZP_03101841.1| chemotaxis protein MotB [Bacillus cereus W]
 gi|49330229|gb|AAT60875.1| motility protein B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992974|gb|EDX56933.1| chemotaxis protein MotB [Bacillus cereus W]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%)

Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273
           F+T  T  G++++I++     +FD   +    E++ + +++  +L + S   I++ GHTD
Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMN 328
             P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R  IA   +    
Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYR-SIAPNNTQEGK 244

Query: 329 SANRRIDILV 338
           + NRR+++ +
Sbjct: 245 AKNRRVEVFI 254


>gi|23099999|ref|NP_693465.1| motility protein B [Oceanobacillus iheyensis HTE831]
 gi|22778230|dbj|BAC14500.1| motility protein B (flagellar motor rotation) [Oceanobacillus
           iheyensis HTE831]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--- 88
           SW + YAD +T+L+A F+V++   A  D   +  EQ  + F      A  G+ D Q    
Sbjct: 16  SWLLPYADLLTLLVALFIVLF---AMSDINIQKYEQLASVFRSEFSNAGSGVLDHQEIPV 72

Query: 89  -PPERSS--QNKIDLSIDEHITKNSVDLK 114
            PPE+    +N+     DE ++K+  +L+
Sbjct: 73  PPPEQEEVDENEDSEEQDEQLSKSESELR 101


>gi|209550830|ref|YP_002282747.1| hypothetical protein Rleg2_3254 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536586|gb|ACI56521.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   + + 
Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322

Query: 322 IASDP-MNSANRRIDI 336
               P   + NRRI++
Sbjct: 323 PGETPDARATNRRIEL 338


>gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298590760|gb|EFI50962.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARD 283
           L++ +  + T  F+   ++  P++  +L ++ E VL   T  I I GHTD++  +     
Sbjct: 351 LLTGLLAKGTIQFETGKAVIDPDSAGLLDRLIEAVLRCPTSQIEIEGHTDSNGEKEA--- 407

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           N  LS+ RA +     +K+GV ++RIS + GF   R   ++D     + NRRI+ +V
Sbjct: 408 NLALSMRRAQAVADYFIKAGVPKERISAV-GFGSERPVASNDTEEGKAQNRRIEFVV 463


>gi|288959276|ref|YP_003449617.1| outer membrane protein [Azospirillum sp. B510]
 gi|288911584|dbj|BAI73073.1| outer membrane protein [Azospirillum sp. B510]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD +S++  PE+  VL K+  V+  + T    I GHTDA     +  D  N  LS  RA 
Sbjct: 44  FDFNSAVIKPESRAVLDKVAAVMTTAGTTRFRIVGHTDA-----VGGDAANLALSKRRAA 98

Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L  +  +  DR+ ++SG     L +   P  +ANRR++I+
Sbjct: 99  AVVEYLASRHRIQRDRL-EVSGMGARELLLPDQPTAAANRRVEII 142


>gi|148261080|ref|YP_001235207.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402761|gb|ABQ31288.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 456

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           L G +   I KG   E    G +   +I   NT +F   S+      + ++ KIG+ LA 
Sbjct: 315 LRGFLQPEITKG---EVAVLGTVNAPVIRINNTGLFASGSATVESTALPLISKIGQALAR 371

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + G+TD+ P   +   +N  LS DRA +A  VL ++   + RI+     A   +
Sbjct: 372 EKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGAADPI 431

Query: 321 KIASDPMNSA-NRRIDILV 338
              + P   A NRRI+I++
Sbjct: 432 ATNATPQGRALNRRIEIVL 450


>gi|229121280|ref|ZP_04250511.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228662125|gb|EEL17734.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            K L K +D E+   K     +P +S EK    M  KKR+ +L KK    L   V +N +
Sbjct: 44  SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHT
Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN 328
           D+ P  N     NW LS  RA +    L++    +D+     G+A  +  + +D P N
Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQN 214


>gi|281420329|ref|ZP_06251328.1| lipoprotein PG3 [Prevotella copri DSM 18205]
 gi|281405631|gb|EFB36311.1| lipoprotein PG3 [Prevotella copri DSM 18205]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L +   VL ++T+  +SI+G+TDA+    I   N  LS  RA + Y  L   GV+  ++ 
Sbjct: 148 LAQFAGVLKNNTDCEVSIQGYTDATGNDGI---NLPLSQKRAEAVYNYLASCGVTSRQVK 204

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            + GF      + +    + NRR+++ +   Q
Sbjct: 205 NVQGFGSANPVVNTTAACAQNRRVEVYMYASQ 236


>gi|167950042|ref|ZP_02537116.1| flagellar motor protein MotB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 151

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 211 IVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           I +G+L  ET  T I+I I ++ +   F    +   P    V+ KI +V+A +   + + 
Sbjct: 6   IDEGMLEVETEATKIIIRIQEKGS---FGSGRATLNPGFFDVISKITKVIASTPGKVVVA 62

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P      R NW LS DRA +    ++ + G+   R+S + G A     + +D  
Sbjct: 63  GHTDDIPISTKRFRSNWELSSDRAVTVVHAMLSNHGLDPSRVS-VEGHADSSPLVPNDSW 121

Query: 328 --NSANRRIDILVE 339
              + NRR+++++E
Sbjct: 122 ANRAKNRRVELIIE 135


>gi|253575920|ref|ZP_04853254.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844714|gb|EES72728.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           PL++ ++   K+++ L +L K I S     + DN ++  +       GI I++ D+    
Sbjct: 128 PLTERELAFRKQEEELANLMKLIES----YIKDNSLEDQIHVADLPQGISITLSDRF--- 180

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAY 293
           +FD   +     +   L K+  +      VISI GHTD  P  + +  +DNW LS  RA 
Sbjct: 181 LFDTGKADLKSGSAKTLAKLASLFRQLDTVISIEGHTDNLPIVYASEFKDNWELSGARAL 240

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           S  +  +     + +  + +G+A  R    +D       NRR++I V
Sbjct: 241 SVLRFFVDKEKLDPQQFQYAGYADTRPAADNDTPEGRQKNRRVEITV 287


>gi|330947752|gb|EGH48208.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 102

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P +  +L+ +  +  +   V+ I G+TD++  R   +DN +LS DRA +   VLM  GV 
Sbjct: 1   PPSRTILKVVQFLQINPRRVVRIEGYTDSTGDR---QDNLKLSKDRAQAVADVLMDLGVD 57

Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 58  EKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 96


>gi|322435021|ref|YP_004217233.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162748|gb|ADW68453.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           KE + A   KK+L   A  + +T  GLV                     +  R    F  
Sbjct: 104 KEVVKAQVEKKQLTSDAVSVRATGDGLV---------------------VSLREAGFFAS 142

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298
            S+   PE + VLQ +   L   +  + + GHTD  P        NW LS  RA +  ++
Sbjct: 143 GSADVRPEALAVLQTVAAALPRQS--MRVEGHTDNIPIHTTQFATNWELSTARAATITRL 200

Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           L+     +      +G A  R     A+D   + NRR+DI++
Sbjct: 201 LIAQNAVDPAQVSAAGDAEFRPIADNATDAGRAQNRRVDIIL 242


>gi|90418921|ref|ZP_01226832.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90337001|gb|EAS50706.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
           L E IV L +  E+ +    +I + GHTD  P       DNW LS +RA +  + L+  G
Sbjct: 246 LAEAIVALNR--EIPSDINWIIRVDGHTDNVPISGGRFEDNWELSTERAGAVVKYLISQG 303

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341
           V  +R++  +GF  ++     DP N+      NRRI+  + +R
Sbjct: 304 VPPERLAA-TGFGEYQ---PIDPDNTPEARARNRRIEFKLTER 342


>gi|256823714|ref|YP_003147677.1| type IV / VI secretion system protein, DotU family [Kangiella
           koreensis DSM 16069]
 gi|256797253|gb|ACV27909.1| type IV / VI secretion system protein, DotU family [Kangiella
           koreensis DSM 16069]
          Length = 439

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294
           M+  +S+     +I +++KIG++   +   I + GH+D    F      NW LSL RA S
Sbjct: 318 MYSSASAQLNENSIALIEKIGQIATTTPGHIQVVGHSDDQKIFTAKYHSNWELSLARANS 377

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
             ++L ++     R+ ++  G A  R+   +D   + NRR++IL+
Sbjct: 378 VVRILNQNQNLAGRVTAEGRGAAEPRVANDTDTNRALNRRVEILL 422


>gi|260172785|ref|ZP_05759197.1| putative flagellar motor protein MotB [Bacteroides sp. D2]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR---- 191
           N+Q S   KN L RD+ K  +  +      ++N  E   L  L  +K   +  ++R    
Sbjct: 25  NAQMSAQIKN-LLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINE 83

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPL 245
           LQD+ K  +  +  L+++  VK  L   +   + +   D +      +  +F   S+   
Sbjct: 84  LQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREKDGKVYVAMSDKLLFQSGSARLD 141

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302
                 L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K+
Sbjct: 142 KRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 200


>gi|261341826|ref|ZP_05969684.1| hypothetical protein ENTCAN_08313 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316202|gb|EFC55140.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD SS+   P     L  +  VL  +S   +++ G
Sbjct: 92  MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYSKTAVNVIG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD++  +++   N RLS  RA S    L+  GV+ +RI + SG       IAS+     
Sbjct: 151 YTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRI-RTSGMGPAN-PIASNSTAEG 205

Query: 328 NSANRRIDILVEDRQ 342
            + NRR++I +   Q
Sbjct: 206 KAQNRRVEITLSPVQ 220


>gi|238916758|ref|YP_002930275.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750]
 gi|238872118|gb|ACR71828.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292
           +FD   +   P+ + +L K+ + L  +   VI+I GHTD  P  N +R  +N  LSL RA
Sbjct: 154 LFDSGKAELTPQALTLLDKVADALIEYDDNVITIEGHTDNVPI-NTSRYPNNMMLSLYRA 212

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSA-NRRIDILV 338
           YS +   +      D+    SG     + IA +  P   A NRR++I V
Sbjct: 213 YSVFDFFVSDKGFSDKTMSSSGRGDA-VPIADNGTPEGRAQNRRVEIKV 260


>gi|237722039|ref|ZP_04552520.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298483221|ref|ZP_07001400.1| flagellar motor protein MotB [Bacteroides sp. D22]
 gi|229448908|gb|EEO54699.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298270538|gb|EFI12120.1| flagellar motor protein MotB [Bacteroides sp. D22]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++ +T  K   Q L NN   + N Q S   KN L RD+ K  +  +      ++N  E  
Sbjct: 28  EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85

Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            L  L  +K   +  ++R    LQD+ K  +  +  L+++  VK  L   +   + +   
Sbjct: 86  KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143

Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281
           D +      +  +F   S+         L K+ EVL   T++ + I GHTD  P   +  
Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203

Query: 282 RDNWRLSLDRAYSAYQVLMKS 302
           +DNW LS+ RA S  ++L+K+
Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224


>gi|15893597|ref|NP_346946.1| chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum ATCC 824]
 gi|15023148|gb|AAK78286.1|AE007545_3 Chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum ATCC 824]
 gi|325507717|gb|ADZ19353.1| Chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum EA 2018]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 24/183 (13%)

Query: 167 INKEENYFLPPLSKEKILAMKRKK-RLQDLAKKI-----SSTLSGLVADNIVKGVLFETT 220
           I    +Y     SK+   A K ++ +L+D+ KKI      + + G V+ N+         
Sbjct: 72  IKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQNGMQGSVSTNL--------Q 123

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+++SI+D   T MFD   +   P+    L +IGE+L      I I GHTD +P  N 
Sbjct: 124 EKGLVVSIVD---TLMFDTGRAEVKPDFQKKLVEIGEILKTIDNYIRIEGHTDNTPISNS 180

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA----NRRID 335
               N  L   R+ +   + +   VS+  ++++   ++   +  +D  + A    NRR+D
Sbjct: 181 QYASNIELGSARSNNVEHLFID--VSKIPVTQMYTVSYADTRPVADNNSEAGKARNRRVD 238

Query: 336 ILV 338
           I++
Sbjct: 239 IVI 241



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMW 52
          + P N   W + Y+D +T+LMAFF+VM+
Sbjct: 7  EEPENSERWLLTYSDLITLLMAFFIVMY 34


>gi|221638712|ref|YP_002524974.1| hypothetical protein RSKD131_0613 [Rhodobacter sphaeroides KD131]
 gi|221159493|gb|ACM00473.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131]
          Length = 525

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 14/119 (11%)

Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285
           +F+  S+   PE       V+Q + E+     E    +I + GHTD  P       RDNW
Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
            LS  RA S  + + +S G    R++  +GF  +R     D  +  + NRRI++ + +R
Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSADARAQNRRIELKLTER 525


>gi|15641766|ref|NP_231398.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121585850|ref|ZP_01675644.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80]
 gi|121727708|ref|ZP_01680803.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52]
 gi|147673520|ref|YP_001217304.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395]
 gi|153819630|ref|ZP_01972297.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457]
 gi|153821127|ref|ZP_01973794.1| hypothetical protein A5E_2064 [Vibrio cholerae B33]
 gi|227081908|ref|YP_002810459.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2]
 gi|229508134|ref|ZP_04397639.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286]
 gi|229511627|ref|ZP_04401106.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33]
 gi|229518766|ref|ZP_04408209.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9]
 gi|229607695|ref|YP_002878343.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236]
 gi|255744822|ref|ZP_05418772.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101]
 gi|262161895|ref|ZP_06030913.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169763|ref|ZP_06037454.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27]
 gi|298498167|ref|ZP_07007974.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656285|gb|AAF94912.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549988|gb|EAX60006.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80]
 gi|121630005|gb|EAX62413.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52]
 gi|126509834|gb|EAZ72428.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457]
 gi|126521323|gb|EAZ78546.1| hypothetical protein A5E_2064 [Vibrio cholerae B33]
 gi|146315403|gb|ABQ19942.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395]
 gi|227009796|gb|ACP06008.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2]
 gi|227013663|gb|ACP09873.1| chemotaxis protein MotB-related protein [Vibrio cholerae O395]
 gi|229343455|gb|EEO08430.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9]
 gi|229351592|gb|EEO16533.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33]
 gi|229355639|gb|EEO20560.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286]
 gi|229370350|gb|ACQ60773.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236]
 gi|255737293|gb|EET92688.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101]
 gi|262021997|gb|EEY40707.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27]
 gi|262028627|gb|EEY47282.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE
           91/1]
 gi|297542500|gb|EFH78550.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 69/164 (42%), Gaps = 34/164 (20%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256
           L   NI+  V  E  +  +++ I D        +S        SSIP   TI   ++ IG
Sbjct: 64  LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123

Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300
            VL HS           + I I GHTD+       + NW LS DRA S + V        
Sbjct: 124 VVL-HSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182

Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336
            K G  E+    ++  +SG+A  R   L  A+    S NRRIDI
Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLHEANQQEKSQNRRIDI 226


>gi|118588357|ref|ZP_01545766.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614]
 gi|118439063|gb|EAV45695.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTDA P     R  +NW LS  RA S  + L++ GV   R+   +GF   +   
Sbjct: 242 VLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLIERGVDPKRLVA-AGFGEFQPLE 300

Query: 323 ASDPMNSA--NRRIDILVEDR 341
             D   +   NRRI++ + +R
Sbjct: 301 EGDTQEALAKNRRIELKLTER 321


>gi|327405866|ref|YP_004346704.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327321374|gb|AEA45866.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 687

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284
           IS I+      FD   +I  PE+ + L K+ ++L A+ T  I I GHTD    R  A  N
Sbjct: 564 ISNINPLKNVFFDLDKAILRPESFLELNKLRDLLKANPTMKIEIGGHTDT---RGDAAKN 620

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            +LS  RA S  + L+  G+   R+S   GF   +  I  D +N
Sbjct: 621 MQLSDARAKSVKEYLIAQGIEASRLSS-KGFGATKPIITDDVIN 663


>gi|254440394|ref|ZP_05053888.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198255840|gb|EDY80154.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A+ +  R  + A++    L   +   I +G++    R GI+   +       F   S+  
Sbjct: 157 ALNQMARAIEKAREAEEQLRANLQSEIEQGLVTVEQRDGIVFVSLGAGGA--FPSGSADL 214

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS 302
             +  ++++++G V +     + + GHTD  P  F  + RDNW L+  RA S  Q +  +
Sbjct: 215 TQQASIIIEELGAVTSDPASRVIVSGHTDNVPISFGALYRDNWDLAAARAASVVQAIEAT 274

Query: 303 GVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILVE 339
              + R      F   +  IA +        NRRI+I +E
Sbjct: 275 NPVQGRTMSAVSFGQTQ-PIADNFTAEGREQNRRIEIEIE 313


>gi|148546771|ref|YP_001266873.1| flagellar motor protein MotD [Pseudomonas putida F1]
 gi|148510829|gb|ABQ77689.1| OmpA/MotB domain protein [Pseudomonas putida F1]
 gi|313497822|gb|ADR59188.1| Flagellar motor protein MotD [Pseudomonas putida BIRD-1]
          Length = 285

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +GK    S  L    N  E    P P+  E+ L+++     + L K    T +GL A N+
Sbjct: 42  EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98

Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                    V+    +       T R   L   I+  ++ +F    ++P  +   +++K+
Sbjct: 99  DPLKTISDDVRDAFGDLINSDQMTVRGNELWVEIELNSSLLFGSGDAMPSDKAFAIIEKV 158

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L      + + G TD  P R      NW LS  RA S  ++L   GV+  R++ + G
Sbjct: 159 ANILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217

Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338
           +  ++   ++D     + NRR+ +++
Sbjct: 218 YGEYQPVASNDTAEGRARNRRVVLVI 243



 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62


>gi|89094432|ref|ZP_01167372.1| chemotaxis protein MotB [Oceanospirillum sp. MED92]
 gi|89081324|gb|EAR60556.1| chemotaxis protein MotB [Oceanospirillum sp. MED92]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 11/52 (21%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
          W I YADF+T+L AFF+VM+ I++ ++      E+Y     KNL  A  G+F
Sbjct: 16 WVISYADFITLLFAFFVVMYAISSVNE------EKY-----KNLTDALAGVF 56


>gi|269967472|ref|ZP_06181529.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B]
 gi|269827913|gb|EEZ82190.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I+  +S  +A  I KG++  E  +  + IS+  Q    +F+  S+  +     V+ K+  
Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343

Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315
            L  +   I + GHTD  P F +    NW LSL RA +  + L+ +   E R I +  G 
Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403

Query: 316 AHHRLKIASDPMNSANRRIDI 336
           A   ++ +SD   + NRRI+I
Sbjct: 404 ARPLVENSSDENRAINRRIEI 424


>gi|262198644|ref|YP_003269853.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081991|gb|ACY17960.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 247 ETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           E+  +L  +   +  + ++  I ++GHTDA   R  A  N RLS +RA S    L+K GV
Sbjct: 540 ESFPILDAVAATIMGNPDIRLIEVQGHTDA---RGSASYNLRLSDERAKSVRAYLLKKGV 596

Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
             DR+    G+   +   +S  +  ++ NRR++ L+ +R
Sbjct: 597 EPDRVDA-KGYGETKPIDSSNTEKAHATNRRVEFLIMNR 634


>gi|163801699|ref|ZP_02195597.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4]
 gi|159174616|gb|EDP59418.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 34/164 (20%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256
           L   NI+  V  E  +  +++ I D        +S        SSIP   TI   L+ IG
Sbjct: 64  LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQALKDIG 123

Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300
            VL HS           + + I GHTD+       + NW LS DRA S + V        
Sbjct: 124 VVL-HSAIQKKDRFQYLDTVFIEGHTDSDGIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182

Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336
            K G  E+    ++  +SG+A  R   L+ ++    S NRRIDI
Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKSQNRRIDI 226


>gi|291613389|ref|YP_003523546.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583501|gb|ADE11159.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 163

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           ++ +  FD +      E + V+QK  E L  H  +V++++G+ D    R   + N  L  
Sbjct: 54  EKQSDYFDFNKYTVKSEYMNVIQKEAEFLKTHKNDVVTLQGNADE---RGSEKYNLGLGE 110

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           +RA +  +VL K GV  D+I  +S G    RL    +     NRR+D L
Sbjct: 111 NRADAVAKVLEKDGVPADQIKMVSLGKDKPRLTCHKEKCWKENRRVDFL 159


>gi|84683658|ref|ZP_01011561.1| flagellar motor protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84668401|gb|EAQ14868.1| flagellar motor protein [Rhodobacterales bacterium HTCC2654]
          Length = 617

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321
           ++ + GHTD+ PFR  A   DNW LS  RA S  + +  + G   DR+   +GF   +  
Sbjct: 537 ILRVDGHTDSQPFRGNAEYADNWELSQARALSVVRYMQDQLGFPPDRLVA-AGFGEWQ-P 594

Query: 322 IA---SDPMNSANRRIDI 336
           IA   SD   +ANRRI++
Sbjct: 595 IAEGDSDEALAANRRIEL 612


>gi|91224571|ref|ZP_01259832.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01]
 gi|91190459|gb|EAS76727.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I+  +S  +A  I KG++  E  +  + IS+  Q    +F+  S+  +     V+ K+  
Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343

Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315
            L  +   I + GHTD  P F +    NW LSL RA +  + L+ +   E R I +  G 
Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403

Query: 316 AHHRLKIASDPMNSANRRIDI 336
           A   ++ +SD   + NRRI+I
Sbjct: 404 ARPLVENSSDENRAINRRIEI 424


>gi|299145102|ref|ZP_07038170.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23]
 gi|298515593|gb|EFI39474.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++ +T  K   Q L NN   + N Q S   KN L RD+ K  +  +      ++N  E  
Sbjct: 28  EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85

Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            L  L  +K   +  ++R    LQD+ K  +  +  L+++  VK  L   +   + +   
Sbjct: 86  KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143

Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281
           D +      +  +F   S+         L K+ EVL   T++ + I GHTD  P   +  
Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203

Query: 282 RDNWRLSLDRAYSAYQVLMKS 302
           +DNW LS+ RA S  ++L+K+
Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224


>gi|237716994|ref|ZP_04547475.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405762|ref|ZP_06082312.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229442977|gb|EEO48768.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356637|gb|EEZ05727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++ +T  K   Q L NN   + N Q S   KN L RD+ K  +  +      ++N  E  
Sbjct: 28  EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85

Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            L  L  +K   +  ++R    LQD+ K  +  +  L+++  VK  L   +   + +   
Sbjct: 86  KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143

Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281
           D +      +  +F   S+         L K+ EVL   T++ + I GHTD  P   +  
Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203

Query: 282 RDNWRLSLDRAYSAYQVLMKS 302
           +DNW LS+ RA S  ++L+K+
Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224


>gi|225382176|gb|ACN89316.1| hypothetical protein VEPGS_0610 [Vibrio alginolyticus]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I+  +S  +A  I KG++  E  +  + IS+  Q    +F+  S+  +     V+ K+  
Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343

Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315
            L  +   I + GHTD  P F +    NW LSL RA +  + L+ +   E R I +  G 
Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403

Query: 316 AHHRLKIASDPMNSANRRIDI 336
           A   ++ +SD   + NRRI+I
Sbjct: 404 ARPLVENSSDENRAINRRIEI 424


>gi|167463460|ref|ZP_02328549.1| flagellar motor protein MotB [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 258

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 186 MKRK-KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSI 243
           M+RK K LQD+ K    T+   + +N ++  +    +  G+ +++ D     +FD   + 
Sbjct: 103 MERKEKELQDILK----TVQAYIEENHLEAQIAVGNSERGVSVTLKDLF---LFDLGKAE 155

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
             PE   VL K+  +       ISI GHTD  P R  +  +DNW LS  R+ S  +    
Sbjct: 156 LKPEAYPVLNKLASLFPTLDTKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTT 215

Query: 302 SGVSEDRISKI--SGFAHHRLKIASDPMN--SANRRIDILV 338
               +   SK   +G+A       +D M   + NRR++I++
Sbjct: 216 KADPKISDSKFMSTGYADTIPVAPNDSMENRAKNRRVEIVI 256



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK---NLMTASKGIFDEQNP 89
          W + YAD +T+L+AFF++M+ ++  D +  + + Q  +   K   ++++ + G+  +  P
Sbjct: 21 WLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNSILSMNSGVSGQNMP 80

Query: 90 PERS 93
          P+ +
Sbjct: 81 PKST 84


>gi|78356582|ref|YP_388031.1| motB protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218987|gb|ABB38336.1| motB protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 245

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           +++ +K+L +  +K+ S +   +    V+GV+      G++   I      +F+K+S   
Sbjct: 84  SVRLQKQLIEAQRKVYSDVRTFLNRKGVEGVIGAVFDEGVIT--IKVPAGVLFEKNSVDI 141

Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMK 301
             + + +L+ + +  L    + I+IRG+TD S     +  RDNW +S  RA +  +  +K
Sbjct: 142 SADGLSMLEGLNDFFLKKKDQSINIRGYTDDSVPAAGSRFRDNWEISALRAVNVLRFFLK 201

Query: 302 SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           SG+   R++    G         S+   + NRR++ ++E R G
Sbjct: 202 SGIEPGRLTATGLGDLDPLFPNTSEENRAKNRRVEFVLERRVG 244


>gi|163796351|ref|ZP_02190312.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159178493|gb|EDP63035.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 561

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           ++ + GHTD  P  N   R NW LS  RA S  + L+  G+  +R+S  +G+  ++    
Sbjct: 487 ILQVEGHTDTVPIHNEQFRSNWELSAARAISVVKYLVDQGIPAERLSA-TGYGEYQ---- 541

Query: 324 SDPMNSA----NRRIDI 336
             P++ A    NRRI++
Sbjct: 542 --PIDPADLERNRRIEM 556


>gi|269792934|ref|YP_003317838.1| OmpA/MotB domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100569|gb|ACZ19556.1| OmpA/MotB domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 241

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KR Q+  + I+  L  L  +  ++  +     + G+ +S+ +Q    +F   S+   P  
Sbjct: 86  KRTQEFKEGIARQLQALAKEEGLQSQMKVHVDQRGVTVSMSEQF---LFAPGSAELSPFA 142

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSE 306
             VL K+G+VL      +S  GHTD +P    +  DNW LS  RA +    ++ + G+S+
Sbjct: 143 RRVLFKVGQVLRVVRFPLSFEGHTDNTPMEGGLYGDNWGLSAARAAAVASYMVNRIGLSD 202

Query: 307 DRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338
             +  + G+   +  + +D P + A NRR+DI++
Sbjct: 203 KNVQAV-GYGPSKPLVPNDTPEHRAINRRVDIVI 235


>gi|325271956|ref|ZP_08138407.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51]
 gi|324102904|gb|EGC00300.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYS 294
           +F    ++P  +   +++K+ ++L      + + G TD  P R      NW LS  RA S
Sbjct: 139 LFGSGDAMPSDKAFAIIEKVADILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAAS 198

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             ++L   GV+  R++ + G+  ++   ++D  +  + NRR+ +++
Sbjct: 199 IVRLLAMEGVNPARMASV-GYGEYQPVASNDTADGRARNRRVVLVI 243



 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62


>gi|218459695|ref|ZP_03499786.1| hypothetical protein RetlK5_09429 [Rhizobium etli Kim 5]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF   +   
Sbjct: 12  VLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 70

Query: 323 ASDP--MNSANRRIDILVEDR 341
             D     + NRRI++ + ++
Sbjct: 71  PGDTPEARATNRRIELKLTEK 91


>gi|88704268|ref|ZP_01101982.1| flagellar motor protein MotB [Congregibacter litoralis KT71]
 gi|88701319|gb|EAQ98424.1| flagellar motor protein MotB [Congregibacter litoralis KT71]
          Length = 272

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F   S   L  +I +LQ++ E L      + ++GHTD  P RN     NW LS  RA +
Sbjct: 156 LFPSGSRSLLASSIPMLQRLAETLGGLPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAA 215

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
             +V    G+   R+S + GF  +R      ++   + NRR+ ILV
Sbjct: 216 VARVFEDEGIDPSRLSAV-GFGPNRPITDNLTEESRAENRRVVILV 260


>gi|311992350|gb|ADQ26748.1| flagellar stator protein [Aeromonas hydrophila]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFNPFGK 74
          + KKK A  + P N   W + YADFMT+L A F+V++    A   +T+  I+ +    GK
Sbjct: 1  VAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58

Query: 75 -NLMTASKG 82
            L++ + G
Sbjct: 59 IGLISPAAG 67



 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 23/114 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293
           +F   S+   P+ I ++ KI  +LA     + + GHTD S  P   + R NW LS+ R+ 
Sbjct: 171 LFPADSAFLQPQFIPLVNKISGILADIPGKVVVTGHTDNSQAPV-ELYRSNWELSVLRSA 229

Query: 294 SAYQVLM-----------KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           S    L+             GV++ +    +  A HR          ANRR++I
Sbjct: 230 SIVHTLLTNPKLDATRVIAQGVADAQPRYPNDTAEHR---------QANRRVEI 274


>gi|157889001|dbj|BAF80950.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G+VL  + +  +I  GHTD++  +     N +LSL+RA +  + L KSGV
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKVY---NQKLSLERAKAVAKELEKSGV 289

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           ++++I+   G+   + K ++D     + NRR++
Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|157889016|dbj|BAF80962.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G+VL  + +  +I  GHTD++  +     N +LSL+RA +  + L KSGV
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            +++I+   G+   + K ++D     + NRR++
Sbjct: 290 VKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|332557731|ref|ZP_08412053.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N]
 gi|332275443|gb|EGJ20758.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285
           +F+  S+   PE       V+Q + E+     E    +I + GHTD  P       RDNW
Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LS  RA S  + + +S G    R++  +GF  +R     D     + NRRI++ + +R
Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525


>gi|188587883|ref|YP_001922642.1| chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498164|gb|ACD51300.1| putative chemotaxis MotB protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 244

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 18/125 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS  D      F+   +    E    L  I ++L +    I + G+TD     N+A 
Sbjct: 115 GLIISFNDN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTD-----NVAI 166

Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                  NW+LS  RA +  ++L+K G +S D++S I G+  +R   ++D  +  +ANRR
Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRR 225

Query: 334 IDILV 338
           +DI++
Sbjct: 226 VDIVI 230


>gi|26991025|ref|NP_746450.1| flagellar motor protein MotD [Pseudomonas putida KT2440]
 gi|24986055|gb|AAN69914.1|AE016630_5 flagellar motor protein MotB [Pseudomonas putida KT2440]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62



 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +GK    S  L    N  E    P P+  E+ L+++     + L K    T +GL A N+
Sbjct: 42  EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98

Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                    V+    +       T R   L   I+  ++ +F    ++P  +   +++K+
Sbjct: 99  DPLKTISDDVRDAFGDLINSDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKV 158

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L      + + G TD  P R      NW LS  RA S  ++L   GV+  R++ + G
Sbjct: 159 ASILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217

Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338
           +  ++   ++D     + NRR+ +++
Sbjct: 218 YGEYQPVASNDTAEGRARNRRVVLVI 243


>gi|126461734|ref|YP_001042848.1| hypothetical protein Rsph17029_0965 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103398|gb|ABN76076.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285
           +F+  S+   PE       V+Q + E+     E    +I + GHTD  P       RDNW
Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LS  RA S  + + +S G    R++  +GF  +R     D     + NRRI++ + +R
Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525


>gi|251777807|ref|ZP_04820727.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082122|gb|EES48012.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 244

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 18/125 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS  D      F+   +    E    L  I ++L +    I + G+TD     N+A 
Sbjct: 115 GLIISFNDN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTD-----NVAI 166

Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                  NW+LS  RA +  ++L+K G +S D++S I G+  +R   ++D  +  +ANRR
Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRR 225

Query: 334 IDILV 338
           +DI++
Sbjct: 226 VDIVI 230


>gi|2853603|gb|AAC08067.1| MotB [Pseudomonas putida]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 24/206 (11%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +GK    S  L    N  E    P P+  E+ L+++     + L K    T +GL A N+
Sbjct: 42  EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98

Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                    V+    +       T R   L   I+  ++ +F    ++P  +   ++ K+
Sbjct: 99  DPLKTISDDVRDAFGDLINSNQMTVRGNELWIEIELSSSLLFGSGDAMPSDKAFAIIDKV 158

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L      + + G TD  P R      NW LS  RA S  ++L   GV+  R++ + G
Sbjct: 159 ASILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217

Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338
           +  ++    +D     + NRR+ +++
Sbjct: 218 YGEYQPVAGNDTAEGRARNRRVVLVI 243


>gi|157889006|dbj|BAF80954.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G+VL  + +  +I  GHTD++  +     N +LSL+RA +  + L KSGV
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKVY---NQKLSLERAKAVAKELEKSGV 289

Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           ++++I+   G+   + K ++D     + NRR++
Sbjct: 290 AKEKIA-AKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|149277137|ref|ZP_01883279.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39]
 gi|149232014|gb|EDM37391.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
           S+   + K++  L     + K QY R+++N   L ++  SE   N L++D +K +   K 
Sbjct: 54  SLIAKLRKDTTGLSSALNDMKNQYSRMDSNYNKLRSNSSSEI--NKLSQDLKKREQRLKE 111

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
                               E+IL  KR +    L +K+   L G        G+  E  
Sbjct: 112 V-------------------EEILR-KRDEATNQLKEKLQQALLGFTKS----GLTVEIK 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
              + +S+ D+   P    S SI + E     L ++  VL    E+ I++ GHTD+    
Sbjct: 148 NGKVYVSMTDKLLFP----SGSIVIDEKGKQALTQLATVLKQQPEINIAVEGHTDSQKIT 203

Query: 279 NIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
           N+   +DNW LS+ R+ S  + L +    E      +G    +  +  A+    S NRRI
Sbjct: 204 NLGQIKDNWDLSVLRSTSVVRYLTEVNKVESVRMTATGKGEFQPLVSNANAEGRSKNRRI 263

Query: 335 DILV 338
           +I++
Sbjct: 264 EIVL 267


>gi|71280941|ref|YP_267837.1| flagellar motor protein MotB [Colwellia psychrerythraea 34H]
 gi|71146681|gb|AAZ27154.1| sodium-driven polar flagellar protein [Colwellia psychrerythraea
           34H]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 41/283 (14%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN----LMTASK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG      +    K
Sbjct: 10  PPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 69

Query: 82  G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           G  I  ++  P +     I++   + +      L+  + ++     R E          Q
Sbjct: 70  GTSIIAQEFRPGKPEPTPIEVIQQQTMEMTQQMLEFQAGDETSAGGRQEQR--GTERGGQ 127

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S++ +++L   S++  D  K  D+E++  ++ N                     +L KKI
Sbjct: 128 SQNTEDAL---SQQALDQAKQ-DMEEAAQEQVN---------------------ELVKKI 162

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L   + D  ++    E+    ++I I   R    F   S+   P+   V+++IGE+L
Sbjct: 163 AEQLEQQIQDGAIE---LESLGQQVIIRI---RENGSFPSGSAFLQPKFWPVIREIGELL 216

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301
                 I I GHTD       +   NW LS  RA +    L+K
Sbjct: 217 NTVPGEIMISGHTDNRGVDSELFSSNWDLSSKRAVAIAHQLIK 259


>gi|121533429|ref|ZP_01665257.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307988|gb|EAX48902.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 8/133 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N+   +    T  G++I I   ++T +F    +   PE++ +  +I  ++A  ++ + + 
Sbjct: 123 NLAGDIQTALTDDGLMIRI---KDTALFASGRAELKPESLRLGTEIARMIAPLSQRVIVA 179

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P        NW LS  RA +  + ++ ++ +  +RIS +SG+  +R   ++D  
Sbjct: 180 GHTDNMPINTPEFPSNWDLSTKRALNFMKYMLSQAEIKPERIS-VSGYGEYRPVASNDTE 238

Query: 328 N--SANRRIDILV 338
              + NRR+++L+
Sbjct: 239 EGRAKNRRVEVLI 251


>gi|167034899|ref|YP_001670130.1| flagellar motor protein MotD [Pseudomonas putida GB-1]
 gi|166861387|gb|ABY99794.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62



 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +GK    S  L    N  E    P P+  E+ L+++     + L K    T +GL A N+
Sbjct: 42  EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98

Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                    V+    +       T R   L   I+  ++ +F    ++P  +   ++ K+
Sbjct: 99  DPLKTISDDVRDAFGDLINSNQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIDKV 158

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L      + + G TD  P R      NW LS  RA S  ++L   GV+  R++ + G
Sbjct: 159 ANILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217

Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338
           +  ++   ++D  +  + NRR+ +++
Sbjct: 218 YGEYQPVASNDTADGRARNRRVVLVI 243


>gi|120610159|ref|YP_969837.1| hypothetical protein Aave_1472 [Acidovorax citrulli AAC00-1]
 gi|120588623|gb|ABM32063.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284
           SI+  R   +FD +S+   P  + V+Q+I   L   +  + + G++D  P R  AR   N
Sbjct: 309 SIVTLRGDGLFDPASTEVKPRYVAVIQRIASALNEVSGKVVVNGYSDNQPIRT-ARFPSN 367

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           W LS +RA +   +L ++     R+          +   S P   A NRR++I++
Sbjct: 368 WHLSQERAQAVAAMLQRTIADGSRLRAEGRAESDPIAPNSTPEGRALNRRVEIVL 422


>gi|77462842|ref|YP_352346.1| hypothetical protein RSP_2289 [Rhodobacter sphaeroides 2.4.1]
 gi|77387260|gb|ABA78445.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides
           2.4.1]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285
           +F+  S+   PE       V+Q + E+     E    +I + GHTD  P       RDNW
Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LS  RA S  + + +S G    R++  +GF  +R     D     + NRRI++ + +R
Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525


>gi|332533102|ref|ZP_08408971.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037384|gb|EGI73838.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286
           II+  +  +F   SS+       V++ + +++A     + +RG+TD    RN I R NW 
Sbjct: 153 IIELSSGMLFSSGSSVAHSRAKQVVKIVKDIIAPVDNYVRVRGYTDDESIRNEIFRSNWE 212

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LS+ RA S    L   G++  R++ I G+  +
Sbjct: 213 LSVARATSILVELEALGINSARMA-IEGYGQY 243


>gi|148559624|ref|YP_001259565.1| hypothetical protein BOV_1656 [Brucella ovis ATCC 25840]
 gi|148370881|gb|ABQ60860.1| OmpA/MotB domain [Brucella ovis ATCC 25840]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 235 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 290

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 291 ---PLDTANTADARARNRRIELKLTER 314


>gi|262395314|ref|YP_003287167.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|262338908|gb|ACY52702.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 430

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           IS  +S  +A  I KG++  E  +  + IS+  Q    +F+  S+  +     V+ K+  
Sbjct: 287 ISERISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343

Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315
            L  +   I + GHTD  P F +    NW LSL RA +  + L+ +   E R I +  G 
Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSTLEGRVIPEGLGD 403

Query: 316 AHHRLKIASDPMNSANRRIDI 336
           A   ++  SD   + NRRI+I
Sbjct: 404 ARPLVENNSDENRAINRRIEI 424


>gi|258404712|ref|YP_003197454.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796939|gb|ACV67876.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 248

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD   +   P    +L+++ +++      + + GHTD  P       NW +S++RA S 
Sbjct: 122 LFDSGETALKPRAAPLLREVAQLVRPLHLDMRVEGHTDNVPVSRPGISNWDISIERAVSV 181

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339
            + L    +        +G+   R  + +D P N A NRR+D  +E
Sbjct: 182 VKFLTSRDLLPPSRLSAAGYGDQRPLVRNDSPENRAKNRRVDFYLE 227


>gi|224436415|ref|ZP_03657435.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
 gi|313142933|ref|ZP_07805126.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
 gi|313127964|gb|EFR45581.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
          Length = 250

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 266 ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I +RG+TD +  P  +  +DN+ LS  R+ +  + L+K+G+S +RIS  SG+  H+    
Sbjct: 153 IDVRGYTDNASLPIGSRYKDNYELSSARSLAVMKNLIKNGISPERIS-FSGYGEHQAVAP 211

Query: 324 SDP-MNSA-NRRIDIL 337
           +D  +N A N R++I 
Sbjct: 212 NDSTINRAKNNRVEIF 227



 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I++T     +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISSTGSADSEALKTEF 52


>gi|218133672|ref|ZP_03462476.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991047|gb|EEC57053.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC
           43243]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293
           +FD   S    E + +L K+  +L  ++  +I+I GHTD +P  N    DN  LSL RAY
Sbjct: 155 LFDSGKSELKTEAVTLLDKVSSILWEYNDNMIAIEGHTDNNPIHNSKYPDNTMLSLYRAY 214

Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDI 336
           S +  L  + G   D  + ++      + IAS+      + NRR++I
Sbjct: 215 SVFTYLTDQKGF--DASTMLATGRGESVPIASNATAEGRAQNRRVEI 259


>gi|170722824|ref|YP_001750512.1| flagellar motor protein MotD [Pseudomonas putida W619]
 gi|169760827|gb|ACA74143.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62



 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T R   L   I+  ++ +F    ++P  +   +++K+  +L      + + G TD  P R
Sbjct: 122 TIRGNELWVEIELNSSLLFGSGDAMPSDKAFDIIEKVANILKPFANPVHVEGFTDNLPIR 181

Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
                 NW LS  RA S  ++L   GV+  R++ + G+  ++    +D     + NRR+ 
Sbjct: 182 TAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVV 240

Query: 336 ILV 338
           +++
Sbjct: 241 LVI 243


>gi|91204077|emb|CAJ71730.1| similar to flagellar motor protein B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 27/129 (20%)

Query: 234 TPMFDKSSSIPLPETIV--------------VLQKIGEVLAH--STEVISIRGHTDASPF 277
           T + D S SI LP++I+               L+KI  +L    S E++ I GHTD+ P 
Sbjct: 85  TKIKDGSVSIVLPDSILFDPGQTKLREQSKATLKKIAGILKTDISNEMVRIEGHTDSDPI 144

Query: 278 ---RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330
              ++    NW LS  RA S    L+ + G+S  R+  ++GF     +  SD    A   
Sbjct: 145 QKQKDKYPSNWELSTARANSVLHYLVDECGISPTRVY-VAGFGQ--FQPISDNKTKAGKA 201

Query: 331 -NRRIDILV 338
            NRR++ ++
Sbjct: 202 QNRRVEFVI 210


>gi|68164502|gb|AAY87231.1| predicted flagellar motor protein [uncultured bacterium BAC17H8]
          Length = 385

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307
           ++++I  V    +  I++ GHTD  P  F +  RDNW L+  RA S  Q L  +G V   
Sbjct: 292 IMEEIAGVNEAGSGEITVSGHTDDVPLIFGSQFRDNWDLAAARAASVVQALEDTGKVPAG 351

Query: 308 RISKISGFAHHRLKIASDPM--NSANRRIDI 336
           R+  +S F   +   ++D     + NRRI+I
Sbjct: 352 RMQAVS-FGESQPVESNDTARGRATNRRIEI 381


>gi|315921071|ref|ZP_07917311.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694946|gb|EFS31781.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K+
Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224


>gi|261252277|ref|ZP_05944850.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP
           102891]
 gi|260935668|gb|EEX91657.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP
           102891]
          Length = 313

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 126/330 (38%), Gaps = 63/330 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L  W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 10  PPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69

Query: 82  G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           G  I  ++  P R     ID+     I + ++D+    T Q  ++   E++         
Sbjct: 70  GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFHEGESD--------- 111

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                    R     +D  K T  +      +N        ++  + +  + L+ L + I
Sbjct: 112 ---------RAGGTQRDQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESI 162

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L   +    ++    E     I I I   R    F + S+   P+   ++++I +++
Sbjct: 163 KKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLV 216

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I + GHTD       + R NW LS  RA S  Q           + K+ GF H 
Sbjct: 217 KDVPGRIRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRGFNHE 266

Query: 319 RLKIA----SDPMN--------SANRRIDI 336
           RL++     ++P+         S NRR++I
Sbjct: 267 RLRVRGMADTEPLGPNDTEAQRSRNRRVEI 296


>gi|254973922|ref|ZP_05270394.1| chemotaxis protein [Clostridium difficile QCD-66c26]
 gi|255091309|ref|ZP_05320787.1| chemotaxis protein [Clostridium difficile CIP 107932]
 gi|255312966|ref|ZP_05354549.1| chemotaxis protein [Clostridium difficile QCD-76w55]
 gi|255515725|ref|ZP_05383401.1| chemotaxis protein [Clostridium difficile QCD-97b34]
 gi|255648819|ref|ZP_05395721.1| chemotaxis protein [Clostridium difficile QCD-37x79]
 gi|260682038|ref|YP_003213323.1| chemotaxis protein [Clostridium difficile CD196]
 gi|260685636|ref|YP_003216769.1| chemotaxis protein [Clostridium difficile R20291]
 gi|306518934|ref|ZP_07405281.1| chemotaxis protein [Clostridium difficile QCD-32g58]
 gi|260208201|emb|CBA60548.1| chemotaxis protein [Clostridium difficile CD196]
 gi|260211652|emb|CBE01912.1| chemotaxis protein [Clostridium difficile R20291]
          Length = 231

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           QDL  K++++       N+   V  +    GIL+ + D   + +FD   S    ++   L
Sbjct: 90  QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKADSKATL 139

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            K+ +++      I I GHTD  P ++   + NW LS  RA S  +  ++    + R+  
Sbjct: 140 NKVYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFS 199

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338
            +G   ++  ++++     + NRR++IL+
Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228


>gi|16265946|gb|AAL16679.1|AF358690_1 flagellar motor rotation protein [Helicobacter hepaticus]
          Length = 98

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 247 ETIVVLQKIGEVLAHSTEVISI--RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
           +  + LQ++  ++    + + I  RG+TD +P    +R  DN+ LS  R+ S  + L+K+
Sbjct: 11  DVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSSARSLSVMKNLIKN 70

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           G+S +RIS  SG+  H+   A  P +SA  R
Sbjct: 71  GISPERIS-FSGYGEHQ---AVAPNDSALNR 97


>gi|260776526|ref|ZP_05885421.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607749|gb|EEX34014.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 131/325 (40%), Gaps = 67/325 (20%)

Query: 36  VYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQN 88
            +AD M++LM FF+++   +  D    K I       FG +N +      KG  I  ++ 
Sbjct: 3   TFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEF 62

Query: 89  PPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
            P R     ID+ + +   IT+ +++   G +++    QR +         Q      ++
Sbjct: 63  RPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGK-------QTGGKSPDT 115

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
            T+DS+  +     +D E+  + E       LS+E          L+ L + I   L   
Sbjct: 116 STQDSQNSE-----SDSEQQQSAE-------LSQE----------LETLMESIKKALERE 153

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +    ++    E     I I I   R    F + S+   P+   ++++I E++     ++
Sbjct: 154 IEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGIV 207

Query: 267 SIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-- 323
            + GHTD       + R NW LS  RA S  Q           + K+  F+H RL++   
Sbjct: 208 RVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRDFSHQRLQVRGM 257

Query: 324 ----------SDPMNSANRRIDILV 338
                     ++   S NRR++I +
Sbjct: 258 ADTQPLGPNDTEAQRSRNRRVEISI 282


>gi|254694373|ref|ZP_05156201.1| hypothetical protein Babob3T_06882 [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214683|ref|ZP_05928964.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916290|gb|EEX83151.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|160884848|ref|ZP_02065851.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483]
 gi|156109883|gb|EDO11628.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K+
Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224


>gi|119775566|ref|YP_928306.1| flagellar motor protein MotB [Shewanella amazonensis SB2B]
 gi|119768066|gb|ABM00637.1| sodium-driven polar flagellar protein PomB [Shewanella amazonensis
           SB2B]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V++ +G
Sbjct: 155 KKMAEQLNEEIVDGAIE---IESLGQQIIIRI---REKGAFGSGSGFLQPRFRPVIRAVG 208

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E+L     +I++ G+TD     N +   NW LS  RA S    L+          K+ GF
Sbjct: 209 ELLKDVPGIITVSGYTDDMQISNELYSSNWDLSSKRAVSVAHELV----------KVKGF 258

Query: 316 AHHRLKI----ASDPM--------NSANRRIDILVE 339
              R+K+    +++P+         + NRR++I +E
Sbjct: 259 DSSRMKVVGMGSNNPLVPNESAENRARNRRVEIAIE 294


>gi|254719715|ref|ZP_05181526.1| hypothetical protein Bru83_09258 [Brucella sp. 83/13]
 gi|265984730|ref|ZP_06097465.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306837825|ref|ZP_07470687.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653]
 gi|306841432|ref|ZP_07474134.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2]
 gi|264663322|gb|EEZ33583.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306288538|gb|EFM59890.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2]
 gi|306407064|gb|EFM63281.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322

Query: 323 ASDPMN--SANRRIDILVEDR 341
            +D  +  + NRRI++ + +R
Sbjct: 323 TADTADARARNRRIELKLTER 343


>gi|153807056|ref|ZP_01959724.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185]
 gi|149130176|gb|EDM21386.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K+
Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224


>gi|254225118|ref|ZP_04918732.1| chemotaxis protein PomB [Vibrio cholerae V51]
 gi|125622505|gb|EAZ50825.1| chemotaxis protein PomB [Vibrio cholerae V51]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 63/330 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 11  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70

Query: 82  G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           G  I  ++  P R     ID+     I + ++D+    T Q  ++Q  E++      +Q 
Sbjct: 71  GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD--RAGGNQ- 118

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                    RDS +   L      E S+   +N        ++  A    ++++ +A+ I
Sbjct: 119 ---------RDSGQ---LTGGQSAETSVQDSQNTQ---SEMQQQQAQAMSEQMETVAESI 163

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              LS  +    ++    E     I I I   R    F + S+   P+   ++++I E++
Sbjct: 164 KKALSREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 217

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + + GHTD       + R NW LS  RA S  Q           + K+  F H 
Sbjct: 218 KDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHL 267

Query: 319 RLKIA----SDPMN--------SANRRIDI 336
           RL++     + P+         + NRR++I
Sbjct: 268 RLQVRGLADTQPLGPNDTEAQRATNRRVEI 297


>gi|262172094|ref|ZP_06039772.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
 gi|261893170|gb|EEY39156.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
          Length = 279

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 30/165 (18%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLP 246
           Q  AK +S  +   VA++I K +  E  +  I +  + Q      R    F + S+   P
Sbjct: 106 QQQAKAMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQP 164

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +   ++++I +++      + + GHTD       + R NW LS  RA S  Q        
Sbjct: 165 KFRPLVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ-------- 216

Query: 306 EDRISKISGFAHHRLKIA------------SDPMNSANRRIDILV 338
              + K+ GF H RL++             ++   + NRR++I +
Sbjct: 217 --EMEKVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISI 259


>gi|254700373|ref|ZP_05162201.1| hypothetical protein Bsuib55_05884 [Brucella suis bv. 5 str. 513]
 gi|261750869|ref|ZP_05994578.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261740622|gb|EEY28548.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADTRARNRRIELKLTER 343


>gi|312116065|ref|YP_004013661.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311221194|gb|ADP72562.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 24/118 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIA-RDNWR 286
            FD  S+   P     L K+G  L             V+ I GHTD  P    A R NW 
Sbjct: 224 FFDSGSADLSPLGYAELDKLGTALRDLENKIPRDINWVLRIDGHTDVRPIATAAFRSNWE 283

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           LS  RA S  + L+  GV  +R+   +GF  ++      P+ S         NRRI++
Sbjct: 284 LSSQRAISVVKYLVSKGVPPNRLVA-AGFGEYQ------PLTSGYTDADLRRNRRIEL 334


>gi|23502572|ref|NP_698699.1| hypothetical protein BR1714 [Brucella suis 1330]
 gi|161619642|ref|YP_001593529.1| hypothetical protein BCAN_A1752 [Brucella canis ATCC 23365]
 gi|254703491|ref|ZP_05165319.1| hypothetical protein Bsuib36_06117 [Brucella suis bv. 3 str. 686]
 gi|260568797|ref|ZP_05839265.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261754122|ref|ZP_05997831.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|23348573|gb|AAN30614.1| OmpA family protein [Brucella suis 1330]
 gi|161336453|gb|ABX62758.1| OmpA/MotB domain protein [Brucella canis ATCC 23365]
 gi|260154181|gb|EEW89263.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261743875|gb|EEY31801.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|306844705|ref|ZP_07477290.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1]
 gi|306274877|gb|EFM56647.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|237750612|ref|ZP_04581092.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC
          43879]
 gi|229373702|gb|EEO24093.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC
          43879]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + KK   ++ P     W + YADF+++L+A F+ ++ I+A +    KA+ + F       
Sbjct: 1  MAKKCKCEECPAG-EKWAVPYADFLSLLLALFIALYAISAANTSRVKAVTEAF------- 52

Query: 77 MTASKGIFDEQNPPERS 93
                IFD    PER+
Sbjct: 53 ----ITIFDATPMPERT 65


>gi|225628282|ref|ZP_03786316.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|254708420|ref|ZP_05170248.1| hypothetical protein BpinM_16075 [Brucella pinnipedialis
           M163/99/10]
 gi|254708727|ref|ZP_05170538.1| hypothetical protein BpinB_00411 [Brucella pinnipedialis B2/94]
 gi|254714572|ref|ZP_05176383.1| hypothetical protein BcetM6_14787 [Brucella ceti M644/93/1]
 gi|254717469|ref|ZP_05179280.1| hypothetical protein BcetM_13911 [Brucella ceti M13/05/1]
 gi|256030252|ref|ZP_05443866.1| hypothetical protein BpinM2_06326 [Brucella pinnipedialis
           M292/94/1]
 gi|256160427|ref|ZP_05458116.1| hypothetical protein BcetM4_15574 [Brucella ceti M490/95/1]
 gi|256255633|ref|ZP_05461169.1| hypothetical protein BcetB_15393 [Brucella ceti B1/94]
 gi|260167927|ref|ZP_05754738.1| hypothetical protein BruF5_06077 [Brucella sp. F5/99]
 gi|261219302|ref|ZP_05933583.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261222836|ref|ZP_05937117.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|261315919|ref|ZP_05955116.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316219|ref|ZP_05955416.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261322363|ref|ZP_05961560.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261757366|ref|ZP_06001075.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|265987280|ref|ZP_06099837.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|265998795|ref|ZP_06111352.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|225616128|gb|EEH13176.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|260921420|gb|EEX88073.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|260924391|gb|EEX90959.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261295053|gb|EEX98549.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261295442|gb|EEX98938.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261304945|gb|EEY08442.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737350|gb|EEY25346.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|262553484|gb|EEZ09253.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|264659477|gb|EEZ29738.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|17986607|ref|NP_539241.1| hypothetical protein BMEI0324 [Brucella melitensis bv. 1 str. 16M]
 gi|62290586|ref|YP_222379.1| hypothetical protein BruAb1_1699 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700502|ref|YP_415076.1| hypothetical protein BAB1_1726 [Brucella melitensis biovar Abortus
           2308]
 gi|163845293|ref|YP_001622948.1| hypothetical protein BSUIS_B1189 [Brucella suis ATCC 23445]
 gi|189024803|ref|YP_001935571.1| hypothetical protein BAbS19_I16130 [Brucella abortus S19]
 gi|225853169|ref|YP_002733402.1| hypothetical protein BMEA_A1766 [Brucella melitensis ATCC 23457]
 gi|237816090|ref|ZP_04595086.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689881|ref|ZP_05153135.1| hypothetical protein Babob68_06877 [Brucella abortus bv. 6 str.
           870]
 gi|254698031|ref|ZP_05159859.1| hypothetical protein Babob28_10068 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730915|ref|ZP_05189493.1| hypothetical protein Babob42_06907 [Brucella abortus bv. 4 str.
           292]
 gi|256045322|ref|ZP_05448216.1| hypothetical protein Bmelb1R_12582 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061749|ref|ZP_05451886.1| hypothetical protein Bneo5_15516 [Brucella neotomae 5K33]
 gi|256114280|ref|ZP_05455025.1| hypothetical protein Bmelb3E_15803 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256258134|ref|ZP_05463670.1| hypothetical protein Babob9C_12474 [Brucella abortus bv. 9 str.
           C68]
 gi|256263341|ref|ZP_05465873.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370121|ref|YP_003107632.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260547172|ref|ZP_05822910.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260565786|ref|ZP_05836269.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260755413|ref|ZP_05867761.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260758635|ref|ZP_05870983.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260762467|ref|ZP_05874804.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884428|ref|ZP_05896042.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|261325753|ref|ZP_05964950.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|265991747|ref|ZP_06104304.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995585|ref|ZP_06108142.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|297248983|ref|ZP_06932691.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|17982219|gb|AAL51505.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M]
 gi|62196718|gb|AAX75018.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616603|emb|CAJ11682.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308]
 gi|163676016|gb|ABY40126.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020375|gb|ACD73097.1| OmpA/MotB domain protein [Brucella abortus S19]
 gi|225641534|gb|ACO01448.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457]
 gi|237788753|gb|EEP62965.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|256000284|gb|ACU48683.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260095537|gb|EEW79415.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260151159|gb|EEW86254.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260668953|gb|EEX55893.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260672893|gb|EEX59714.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675521|gb|EEX62342.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260873956|gb|EEX81025.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|261301733|gb|EEY05230.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|262766869|gb|EEZ12487.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002703|gb|EEZ15106.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093340|gb|EEZ17409.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297174116|gb|EFH33473.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|326409725|gb|ADZ66790.1| OmpA/MotB domain protein [Brucella melitensis M28]
 gi|326539433|gb|ADZ87648.1| OmpA/MotB domain protein [Brucella melitensis M5-90]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD [Herminiimonas arsenicoxydans]
 gi|133738444|emb|CAL61489.1| putative flagellar motor protein MotD [Herminiimonas
           arsenicoxydans]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 185 AMKRKK-RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           A KR+K R+ ++A+ I   ++ L+ +  V+  + +T R G+ + I     + +F    + 
Sbjct: 94  ATKREKARMTNIARDILKAMAPLIREGKVR--VTQTNR-GVSVEI---NASVLFAPGEAR 147

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS 302
              ++   L+ + EVL      I + GHTD  P  N +   NW LS  RA S  ++ ++S
Sbjct: 148 LSAQSEKALRAVAEVLNKVDNDIQVEGHTDNVPINNAMFPSNWELSAVRASSVVRLFLES 207

Query: 303 GVSEDRI 309
           G++E R+
Sbjct: 208 GMNEKRL 214



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 22/27 (81%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59
          W + YADF+T+L AFF+VM+ I++ ++
Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNE 42


>gi|294850964|ref|ZP_06791640.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
 gi|294821607|gb|EFG38603.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319

Query: 323 ASDPMNSA--------NRRIDILVEDR 341
              P+++A        NRRI++ + +R
Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343


>gi|225012121|ref|ZP_03702558.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003676|gb|EEG41649.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           ++L  ++K+ L +L K++S  L         KG+  E     + IS+    N  +F   S
Sbjct: 131 ELLMSEQKEALLELKKRLSDALLNFEG----KGLTVEQRNGKVYISM---ENKLLFKSGS 183

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298
                +    L ++G VLA + + V+ I GHTD  PF  +     NW LS  RA +  ++
Sbjct: 184 WNVGSQGQEALGQLGTVLAENPDIVVVIEGHTDNVPFSPKEALESNWDLSTKRATAVVKI 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILV 338
           L+    +E  + +    A     +   P N+A     NRRI+I++
Sbjct: 244 LLN---NESVLPQNLTAAGRSEYVPIAPNNNATGRAVNRRIEIIL 285


>gi|15640909|ref|NP_230540.1| flagellar motor protein MotB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588125|ref|ZP_01677872.1| chemotaxis protein PomB [Vibrio cholerae 2740-80]
 gi|121728326|ref|ZP_01681356.1| chemotaxis protein PomB [Vibrio cholerae V52]
 gi|147674334|ref|YP_001216371.1| flagellar motor protein MotB [Vibrio cholerae O395]
 gi|153216012|ref|ZP_01950234.1| flagellar motor protein [Vibrio cholerae 1587]
 gi|153802297|ref|ZP_01956883.1| chemotaxis protein PomB [Vibrio cholerae MZO-3]
 gi|153817212|ref|ZP_01969879.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457]
 gi|153823690|ref|ZP_01976357.1| chemotaxis protein PomB [Vibrio cholerae B33]
 gi|153827046|ref|ZP_01979713.1| chemotaxis protein PomB [Vibrio cholerae MZO-2]
 gi|153830558|ref|ZP_01983225.1| chemotaxis protein PomB [Vibrio cholerae 623-39]
 gi|227081069|ref|YP_002809620.1| chemotaxis protein PomB [Vibrio cholerae M66-2]
 gi|229505502|ref|ZP_04395012.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286]
 gi|229510828|ref|ZP_04400307.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33]
 gi|229513008|ref|ZP_04402474.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21]
 gi|229517949|ref|ZP_04407393.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9]
 gi|229523310|ref|ZP_04412717.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80]
 gi|229525508|ref|ZP_04414913.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530005|ref|ZP_04419395.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)]
 gi|229608521|ref|YP_002879169.1| flagellar motor protein MotB [Vibrio cholerae MJ-1236]
 gi|254285566|ref|ZP_04960530.1| chemotaxis protein PomB [Vibrio cholerae AM-19226]
 gi|254848028|ref|ZP_05237378.1| flagellar motor protein PomB [Vibrio cholerae MO10]
 gi|262191489|ref|ZP_06049674.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93]
 gi|297581278|ref|ZP_06943202.1| chemotaxis protein PomB [Vibrio cholerae RC385]
 gi|298498985|ref|ZP_07008792.1| flagellar motor protein PomB [Vibrio cholerae MAK 757]
 gi|9655348|gb|AAF94055.1| chemotaxis protein PomB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|51241597|emb|CAH17908.1| flagellar motor protein PomB [Vibrio cholerae]
 gi|121547616|gb|EAX57715.1| chemotaxis protein PomB [Vibrio cholerae 2740-80]
 gi|121629381|gb|EAX61811.1| chemotaxis protein PomB [Vibrio cholerae V52]
 gi|124114525|gb|EAY33345.1| flagellar motor protein [Vibrio cholerae 1587]
 gi|124122179|gb|EAY40922.1| chemotaxis protein PomB [Vibrio cholerae MZO-3]
 gi|126512246|gb|EAZ74840.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457]
 gi|126518793|gb|EAZ76016.1| chemotaxis protein PomB [Vibrio cholerae B33]
 gi|146316217|gb|ABQ20756.1| chemotaxis protein PomB [Vibrio cholerae O395]
 gi|148873956|gb|EDL72091.1| chemotaxis protein PomB [Vibrio cholerae 623-39]
 gi|149739087|gb|EDM53383.1| chemotaxis protein PomB [Vibrio cholerae MZO-2]
 gi|150424428|gb|EDN16365.1| chemotaxis protein PomB [Vibrio cholerae AM-19226]
 gi|227008957|gb|ACP05169.1| chemotaxis protein PomB [Vibrio cholerae M66-2]
 gi|227012713|gb|ACP08923.1| chemotaxis protein PomB [Vibrio cholerae O395]
 gi|229333779|gb|EEN99265.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)]
 gi|229339089|gb|EEO04106.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis
           VL426]
 gi|229339673|gb|EEO04688.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80]
 gi|229344664|gb|EEO09638.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9]
 gi|229349901|gb|EEO14855.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21]
 gi|229350793|gb|EEO15734.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33]
 gi|229357725|gb|EEO22642.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286]
 gi|229371176|gb|ACQ61599.1| Flagellar motor rotation protein MotB [Vibrio cholerae MJ-1236]
 gi|254843733|gb|EET22147.1| flagellar motor protein PomB [Vibrio cholerae MO10]
 gi|262032637|gb|EEY51190.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93]
 gi|297534594|gb|EFH73431.1| chemotaxis protein PomB [Vibrio cholerae RC385]
 gi|297543318|gb|EFH79368.1| flagellar motor protein PomB [Vibrio cholerae MAK 757]
          Length = 318

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 63/330 (19%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81
           P  L +W   +AD M++LM FF+++   +  D    K I       FG +N +      K
Sbjct: 11  PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70

Query: 82  G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           G  I  ++  P R     ID+     I + ++D+    T Q  ++Q  E++      +Q 
Sbjct: 71  GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD--RAGGNQ- 118

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                    RDS +   L      E S+   +N        ++  A    ++++ +A+ I
Sbjct: 119 ---------RDSGQ---LTGGQSAETSVQDNQNTQS---EMQQQQAQAMSEQMETVAESI 163

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              LS  +    ++    E     I I I   R    F + S+   P+   ++++I E++
Sbjct: 164 KKALSREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 217

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + + GHTD       + R NW LS  RA S  Q           + K+  F H 
Sbjct: 218 KDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHL 267

Query: 319 RLKIA----SDPMN--------SANRRIDI 336
           RL++     + P+         + NRR++I
Sbjct: 268 RLQVRGLADTQPLGPNDTEAQRATNRRVEI 297


>gi|29348538|ref|NP_812041.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569097|ref|ZP_04846507.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340443|gb|AAO78235.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841116|gb|EES69197.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 280

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K
Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223


>gi|298386938|ref|ZP_06996492.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14]
 gi|298260088|gb|EFI02958.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14]
          Length = 280

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K
Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223


>gi|229163499|ref|ZP_04291450.1| OmpA/MotB domain protein [Bacillus cereus R309803]
 gi|228620068|gb|EEK76943.1| OmpA/MotB domain protein [Bacillus cereus R309803]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G+ ++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 106 TEKGLKVTILE---NVLFDSGKADVKLESLNIAKEMSNLLVSTSPREITVSGHTDNVPIA 162

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
           N     NW LS  RA +  QVL+++  +  ++ S + G+  +R    +D     + NRR+
Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTQEGKAKNRRV 221

Query: 335 DILV 338
           ++ +
Sbjct: 222 EVFI 225


>gi|293369282|ref|ZP_06615869.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292635612|gb|EFF54117.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
          Length = 256

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302
            L K+ EVL   T++ + I GHTD  P   +  +DNW LS+ RA S  ++L+K+
Sbjct: 147 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 200


>gi|251772419|gb|EES52986.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum
           ferrodiazotrophum]
          Length = 285

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           + I VL+ I  +L+ +   I + GHTD  P     ++NW LS  RA +    L+     +
Sbjct: 133 QAIPVLKNIAALLSKTKRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVLTTLIALAPID 192

Query: 307 DRISKISGFAHHRLKIASDPMNSA-----NRRIDILV 338
              +  +G+  +R  +   P  SA     NRR++I+V
Sbjct: 193 PSRASAAGYGQYRPLV---PNTSAENRQKNRRVEIVV 226



 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          NL  W + YADF+T+L  FF++M+ I+A +    K +
Sbjct: 12 NLERWLVSYADFITLLFTFFVMMYAISAVNTGKYKVL 48


>gi|116619472|ref|YP_821628.1| OmpA/MotB domain-containing protein [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116222634|gb|ABJ81343.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus
          Ellin6076]
          Length = 267

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          P N   W + YADF+T+L AFF+VM+    +D +  +A+
Sbjct: 9  PENHERWLVSYADFITLLFAFFVVMFASTQSDKNKARAV 47



 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 153 KGKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +GK   K   L +   +E EN   PP    +           DLAK + +   GL ++  
Sbjct: 70  RGKHEAKKAPLSQQTTEERENPTAPPPRPAET-------HPPDLAKSLDTLQKGLDSELK 122

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              +       G++IS+   R    F        P ++ +L KI  V+      + + GH
Sbjct: 123 NGKLQLRLDPRGLIISM---REATFFASGDDAVAPGSLPILTKIAAVVQSLPNPVRLEGH 179

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPM 327
           TD+ P      R NW LS  R+ +  ++L  +  +   R++ ++G+A +       ++  
Sbjct: 180 TDSRPIHTSRFRSNWELSAARSIAMLELLRDRFQIPASRMA-VAGYAENAPADTNETEEG 238

Query: 328 NSANRRIDILV 338
            + NRR+D+++
Sbjct: 239 RAHNRRVDLVL 249


>gi|309388829|gb|ADO76709.1| OmpA/MotB domain protein [Halanaerobium praevalens DSM 2228]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +Q + K+I + +     +N+   V  E  R G++IS+  +    +++   +    +  
Sbjct: 89  ENIQQVMKQIDNYIEN---NNLSDKVNVENKRKGLVISLTGEI---LYELGKADIREQGK 142

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL KI E+L      I I GHTD  P R      NW LS  RA +  + L++    +  
Sbjct: 143 EVLTKISEILKEIPNDIMIEGHTDDLPIRTAEFPSNWELSTARAVNVIKYLIEEKDFDPA 202

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
               +G++ +R    ++     + NRR++++V + Q
Sbjct: 203 RLSAAGYSEYRPVATNNSTEGRAENRRVEVVVLNSQ 238


>gi|51246518|ref|YP_066402.1| flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54]
 gi|50877555|emb|CAG37395.1| related to flagellar motor protein (MotB) [Desulfotalea
           psychrophila LSv54]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293
           +F +  S   P + ++L+ I +++      + I GH+D  P    NIA  NW LS  RA 
Sbjct: 132 LFARGQSEISPRSYMLLRNIADIIRPLPVNVRIEGHSDDIPLGINNIA--NWNLSTSRAV 189

Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           SA +   +   +S DR+S I     H +   +   N A NRR+D ++
Sbjct: 190 SALRFFYRGNLISLDRLSAIGYGDMHPIAPNTTEENRAKNRRVDFVL 236


>gi|89093474|ref|ZP_01166422.1| flagellar motor protein [Oceanospirillum sp. MED92]
 gi|89082164|gb|EAR61388.1| flagellar motor protein [Oceanospirillum sp. MED92]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS- 294
           FD  S+    E+I VL KI +VL      +SI GH+D  P+       NW LS+ RA + 
Sbjct: 176 FDSGSAELKFESIPVLAKIRDVLLDVKGNVSIEGHSDNIPYAGRRFESNWDLSVARALAV 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           A+++     + + R  K+ G A  +  + +D   +   NRR++I+V
Sbjct: 236 AHELFGDPRIDQSRF-KVLGMADTKPLVPNDTRANRVKNRRVEIIV 280


>gi|157149164|ref|YP_001456483.1| putative outer membrane lipoprotein [Citrobacter koseri ATCC
           BAA-895]
 gi|157086369|gb|ABV16047.1| hypothetical protein CKO_05004 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD SS+   P     L  +  VL  ++   +++ G
Sbjct: 92  MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYNKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD++  +++   N RLS  RA S    L+  GV+ +RI + SG       IAS+     
Sbjct: 151 YTDSTGGQDL---NMRLSQQRADSVASALITQGVAANRI-RTSGMGPAN-PIASNSTAEG 205

Query: 328 NSANRRIDILVEDRQ 342
            + NRR++I +   Q
Sbjct: 206 KAQNRRVEITLSPLQ 220


>gi|194288765|ref|YP_002004672.1| replication/virulence associated protein; outer membrane protein,
           ompa family membrane protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222600|emb|CAQ68603.1| replication/virulence associated protein; putative outer membrane
           protein, OmpA family membrane protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 425

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           L+ L+ D I +GV+    + TR+ I       R   MF +  +    + + +L K+   +
Sbjct: 288 LAELLRDEIARGVVSVQEDATRSAITF-----RGDDMFGRGRADVSEKILPLLDKVAAEV 342

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +  T  +++ GHTD  P +      N  LS +RA +  + L   GV+++R+  I      
Sbjct: 343 SKVTGKVTVIGHTDNVPIKTAKYPSNQALSEERAATVAEYLASKGVAKNRLEAIGKGDSQ 402

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            L     P+  A NRR++I+V
Sbjct: 403 PLADNKAPVGRARNRRVEIVV 423


>gi|307944516|ref|ZP_07659856.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4]
 gi|307772265|gb|EFO31486.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4]
          Length = 344

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321
           V+ + GHTDA P     R  +NW LS  RA S  + L+  G+   R+   +GF   + L+
Sbjct: 265 VLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLVDQGIDPKRLVA-AGFGEFQPLE 323

Query: 322 IASDPMNSA-NRRIDILVEDR 341
               P   A NRRI++ + +R
Sbjct: 324 EGDTPEALAKNRRIELKLTER 344


>gi|237741116|ref|ZP_04571597.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|229430648|gb|EEO40860.1| outer membrane protein [Fusobacterium sp. 4_1_13]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I+GHTD+     I  +  N
Sbjct: 20  VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIQGHTDS-----IGSNAYN 72

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G++EDRI  I      +  IA++        NRR++  +  R
Sbjct: 73  FKLSRRRAESVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 131

Query: 342 Q 342
           +
Sbjct: 132 E 132


>gi|103487468|ref|YP_617029.1| ABC transporter related [Sphingopyxis alaskensis RB2256]
 gi|98977545|gb|ABF53696.1| ABC transporter related [Sphingopyxis alaskensis RB2256]
          Length = 597

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           D  P+    + IV A  +   + F+ V W+   T  D ++A++       +NL+  + G 
Sbjct: 70  DVAPHFRLFYAIVVALALATALRFYFVSWLGERTVADIRQAVQ-------RNLLRLAPGF 122

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           F+E  P E +S+   D +I E +   +V + +
Sbjct: 123 FEENRPSEIASRMTADTAIIEQVVGTTVSVAL 154


>gi|144898366|emb|CAM75230.1| flagellar motor protein MotB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 35/185 (18%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILIS---IIDQ 231
           L++++K ++ DL K+++  L+G V +           ++ VL E  R GI I     + Q
Sbjct: 143 LSVEQKAQIADLGKRLNVALAGKVEELQRYRSEFFGKLRKVLGE--RQGIRIEGDRFVFQ 200

Query: 232 RNTPMFDKSSS----------IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            +  +FD +S+            L +T++ L K  ++      V+ + GHTD  P ++  
Sbjct: 201 -SELLFDSASADLGVSGEQQVRQLAKTLIDLSK--QIPKEVNWVLRVDGHTDKRPIKS-G 256

Query: 282 R--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDI 336
           R   NW LS  RA S  + L+ +GV  DR++  +GF    L +    S+   + NRRI+I
Sbjct: 257 RFPSNWELSTARAISVIRTLIDAGVPADRLAA-AGFGEF-LPLDNSDSEAALAKNRRIEI 314

Query: 337 LVEDR 341
             + R
Sbjct: 315 RFDQR 319


>gi|71280429|ref|YP_268267.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H]
 gi|71146169|gb|AAZ26642.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-------RNTPMFDKSSSIPLPETIV 250
           K+ S LS L  +  +   L+E   +G     ID         +  +F   SS        
Sbjct: 114 KVGSNLSSLEKE--LHTALYELVESGFAQLQIDGDWLEIELNSGLLFPSGSSSATLSAEA 171

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L  I +V+  ++  I +RG+TD     N I   NW LS+ RA +  +VL K G++  R+
Sbjct: 172 ILTVIYDVIGQASNFIRVRGYTDNQVINNEIYSSNWELSVFRATAILRVLEKLGLNPARM 231

Query: 310 SKISGFAHH 318
           + I G+  +
Sbjct: 232 A-IEGYGQY 239


>gi|162453404|ref|YP_001615771.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161163986|emb|CAN95291.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 263

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 24/145 (16%)

Query: 209 DNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
           + +VK G+  +  R  ++IS+       +FD        +   +L+KI +V+     ++ 
Sbjct: 112 EELVKLGLEVQVRRNRMVISLP---GDVLFDSGKDTLSKDGQQILKKISDVIRGDKSLVD 168

Query: 267 ---SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321
               + GHTD+ P+++   +DNW LSL RA +    L+ K G    R    +GFA     
Sbjct: 169 RDYQVAGHTDSQPYKSGPFQDNWGLSLMRARAVLLFLIGKEGQLPTRHWSAAGFAD---- 224

Query: 322 IASDPMNS--------ANRRIDILV 338
             +DP+ S         NRR D++V
Sbjct: 225 --TDPIASNNTPAGKQKNRRCDLIV 247


>gi|117619885|ref|YP_856319.1| flagellar motor protein MotB [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117561292|gb|ABK38240.1| chemotaxis protein MotB [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFNPFGK 74
          + KKK A  + P N   W + YADFMT+L A F+V++    A   +T+  I+ +    GK
Sbjct: 1  MAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58

Query: 75 -NLMTASKG 82
            L++ + G
Sbjct: 59 IGLISPAAG 67



 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293
           +F   S+   P+ I ++ KI  +LA     + + GHTD S  P   + R NW LS+ R+ 
Sbjct: 171 LFPADSAFLQPQFIPLVNKISGILADIPGKVVVTGHTDNSQAPV-ELYRSNWELSVLRSA 229

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336
           S    L+ +   +       G A  + +  +D P +  ANRR++I
Sbjct: 230 SIVHTLLTNPKLDATRVIAQGVADAQPRYPNDTPEHRQANRRVEI 274


>gi|218887954|ref|YP_002437275.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758908|gb|ACL09807.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 248

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292
           +F+  S     E   +LQ + ++   H  + I++RG TD+SP  +  R  DNW LS  RA
Sbjct: 132 LFEPGSDTITAEGRKLLQHMYDLFVRHPDQDINVRGFTDSSPTPSGGRFRDNWDLSSSRA 191

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVE 339
            +  + L+  G++  RI+       + L   +   N A NRR++ ++E
Sbjct: 192 INVLRTLLDMGIAPHRITATGLADMNPLFPNTTEENRARNRRVEFVLE 239


>gi|115373102|ref|ZP_01460404.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|310824354|ref|YP_003956712.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1]
 gi|115369858|gb|EAU68791.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|309397426|gb|ADO74885.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 14/117 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD------ASPFRNIARDNWRLS 288
           +F   S+    E    L KI + L      +I + GHTD        PF +    NW LS
Sbjct: 160 LFASGSTRVGKEGQEALAKIADALKSVQGRIIRVEGHTDDVPTDKNGPFPS----NWELS 215

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           L RA +  + L  +GV    +S  +G+  ++   A+D     S NRRI+I++  + G
Sbjct: 216 LARAMAVVRALQDAGVDPTVLS-AAGYGQYQPIAANDSAENRSLNRRIEIVLAAKAG 271


>gi|149375611|ref|ZP_01893380.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149360013|gb|EDM48468.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 277

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSG 303
           P  + +++++ EVL+  T  + + G+TD  P  +   R NW LS  RA S  ++++M   
Sbjct: 162 PGMVPIIERVVEVLSGCTGDVLVAGYTDDRPIASGRYRSNWDLSAARAVSVVHELVMNRQ 221

Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342
           V  +R+   +G A     + +D P N A NRR++I + + Q
Sbjct: 222 VPAERVVA-AGRAETNPLVPNDSPENRAKNRRVEIAIRNPQ 261


>gi|323498631|ref|ZP_08103623.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326]
 gi|323316329|gb|EGA69348.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 23/118 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLD 290
           R    F + S+   P+   ++++I E++     +I + GHTD     + + R NW LS  
Sbjct: 189 REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGIIRVSGHTDNQRIESELYRSNWDLSAQ 248

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336
           RA S  Q           + K+ GF   RL++     ++P+         S NRR++I
Sbjct: 249 RAVSVAQ----------EMEKVRGFTPQRLRVRGMADTEPLGPNDTEAQRSRNRRVEI 296


>gi|237740939|ref|ZP_04571420.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|229430983|gb|EEO41195.1| outer membrane protein [Fusobacterium sp. 4_1_13]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 20  VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 72

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 73  FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 131

Query: 342 Q 342
           +
Sbjct: 132 E 132


>gi|28869391|ref|NP_792010.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968194|ref|ZP_03396339.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301383801|ref|ZP_07232219.1| ompA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060757|ref|ZP_07252298.1| ompA family protein [Pseudomonas syringae pv. tomato K40]
 gi|302131856|ref|ZP_07257846.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852632|gb|AAO55705.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927174|gb|EEB60724.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|331018607|gb|EGH98663.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 271

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     +T R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    DN  LS DR
Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRE---DNLTLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV + RI ++ G+      +   AS+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDDKRI-QVEGYGQQ-FPVDANASERGRAQNRRVEIVFSDEKG 265


>gi|254228178|ref|ZP_04921607.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262394011|ref|YP_003285865.1| chemotaxis protein MotB-like protein [Vibrio sp. Ex25]
 gi|151939251|gb|EDN58080.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262337605|gb|ACY51400.1| chemotaxis protein MotB-related protein [Vibrio sp. Ex25]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 34/164 (20%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256
           L   NI+  V  E  +  +++ I D        +S        SSIP   TI   ++ IG
Sbjct: 64  LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123

Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300
            VL HS           + + I GHTD+       + NW LS DRA S + V        
Sbjct: 124 VVL-HSAIQKKDRFQYLDTVFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182

Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336
            K G  E+    ++  +SG+A  R   L+ ++    S NRRIDI
Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKSQNRRIDI 226


>gi|153832075|ref|ZP_01984742.1| flagellar motor protein [Vibrio harveyi HY01]
 gi|148871690|gb|EDL70531.1| flagellar motor protein [Vibrio harveyi HY01]
          Length = 430

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           +K   ++ D+A+++S  L    A  I KG V  +     + ISI  Q    +F+  S+  
Sbjct: 278 VKTDSQVTDIAERVSMYL----ATEISKGLVTVDALPDRVRISIKAQ---DLFESGSAEV 330

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSG 303
           +     V+ K+   L  +   I + GHTD  P F +    NW LSL RA +  + L+ + 
Sbjct: 331 VEYIQPVISKLARTLEATEGKILVAGHTDDKPIFTSKYPSNWHLSLARATAMSEQLIANS 390

Query: 304 VSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
             E R+  +  G A   ++  SD   + NRRI+I
Sbjct: 391 ALEGRVLPEGLGDARPLVENTSDENRALNRRIEI 424


>gi|291615624|ref|YP_003518366.1| YiaD [Pantoea ananatis LMG 20103]
 gi|291150654|gb|ADD75238.1| YiaD [Pantoea ananatis LMG 20103]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           +KG     TR G  I +++  N   FD SSS   P     L  +  VL  +    +++ G
Sbjct: 109 MKGTGVSVTRQGDNI-VLNMPNNVTFDSSSSSLKPAGANTLTGVAMVLKEYPKTAVNVVG 167

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
           HTD++  R +   N RLS  RA S    L+  GV+ +R+ ++ +G        +++   +
Sbjct: 168 HTDSTGSRAL---NMRLSQQRAESVASALIVQGVAGNRLHTQGAGPDSPVATNSTEAGKA 224

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 225 QNRRVEI 231


>gi|56698003|ref|YP_168374.1| hypothetical protein SPO3171 [Ruegeria pomeroyi DSS-3]
 gi|56679740|gb|AAV96406.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 766

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 26/120 (21%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIAR--DNW 285
           +FD  S+   PE    + K+  +L             VI + GHTD  P     +  DNW
Sbjct: 649 LFDPGSADLSPEGQFEIAKVARILRAIAADIPPEINWVIRVDGHTDNVPLLGTGKYADNW 708

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
            LS  RA S  + +++S G+  DR+S  +GF  ++      P+N A        NRRI++
Sbjct: 709 ELSQGRALSVVRYMVESLGLPPDRLSA-NGFGEYQ------PVNPADTAEARAQNRRIEL 761


>gi|302187430|ref|ZP_07264103.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 271

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  GV E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265


>gi|160880837|ref|YP_001559805.1| OmpA/MotB domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429503|gb|ABX43066.1| OmpA/MotB domain protein [Clostridium phytofermentans ISDg]
          Length = 275

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISI 268
           N+ K +  ET +TG    +I+   + ++D   +    E + +  K+G++L  +    IS+
Sbjct: 136 NLDKYLDIETDKTGGQYVLINISGSLLYDSGKAQLKSEALPIFSKVGDILKTYKGYRISV 195

Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI-ASD 325
            GHTD  P    I R N  LS  RA +A + L+   G+    I  I    +  +   +S+
Sbjct: 196 IGHTDNVPVTSGIYRSNKELSSARAINAAEYLIDVKGIDPSNIEWIGRGEYDPIADNSSE 255

Query: 326 PMNSANRRIDILV 338
              S NRRI+I +
Sbjct: 256 AGRSKNRRIEIRI 268


>gi|121533623|ref|ZP_01665450.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307614|gb|EAX48529.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 9/137 (6%)

Query: 207 VADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +A+N + G +    T  G++I I   ++T +F    +   PE++ +  +I  ++A   + 
Sbjct: 119 IAENNLAGDIQTALTDDGLMIRI---KDTALFASGRAELKPESLRLGTEIARMIAPLPQR 175

Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323
           + + GHTD  P        NW LS  RA +  + ++ ++ +  +RIS +SG+  +R   +
Sbjct: 176 VIVAGHTDNMPINTPEFPSNWDLSTVRALNFMKYMLSQAEIKPERIS-VSGYGEYRPVAS 234

Query: 324 SDPMN--SANRRIDILV 338
           +D     + NRR+++L+
Sbjct: 235 NDTEEGRAKNRRVEVLI 251


>gi|323490130|ref|ZP_08095350.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2]
 gi|323396178|gb|EGA89004.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2]
          Length = 256

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
          +W + YAD +T+L+A F+V++  +  D     AI + FN    + +    G+ DEQ P E
Sbjct: 16 AWLLPYADVLTLLLALFIVLFASSQVDAKKFNAIAESFN----SELQGGSGVLDEQAPVE 71


>gi|325981887|ref|YP_004294289.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531406|gb|ADZ26127.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 16 IIKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          +I ++  I+++P  N   W + Y+DF+T+L AFF+VM+ +++ +D   + +
Sbjct: 1  MINRRKKINESPLENQERWLVSYSDFITLLFAFFVVMYAVSSVNDGKYRVL 51


>gi|238927470|ref|ZP_04659230.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531]
 gi|238884752|gb|EEQ48390.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           MK  + L +  KK+   +     +N+   V  E T  G+++ + ++    +F   S++  
Sbjct: 92  MKENQDLSEAQKKLDQYIKD---NNLQDQVSTELTEEGLMVRLKEKA---LFSSGSAVLQ 145

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM--KS 302
            +   ++  I  VLA   E ++I GHTD  P        NW LS  RA S  + +M  + 
Sbjct: 146 GDAEKIVPVIAGVLASLPERVTISGHTDNVPISTAQYPSNWELSSARAVSLMRGVMAVQP 205

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
            ++  R S + G++ +R  IAS+        NRR+++ +
Sbjct: 206 SLNPARFSAL-GYSEYR-PIASNDTEEGRAQNRRVEVFI 242


>gi|157889021|dbj|BAF80966.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++  +     N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKTGV 289

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
           ++++I +K  GF   +    +    + NRR++
Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|299134154|ref|ZP_07027347.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298590901|gb|EFI51103.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 24/118 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286
            FD  S+  LPE    L ++   L        A    V+ + GHTD  P  +   + NW 
Sbjct: 223 FFDSGSAALLPEGRNELDQLATALGDLEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWD 282

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           LS  RA S  Q L+  GVS  R+   +GF   +      P+++         NRRI++
Sbjct: 283 LSAARAISVVQYLISRGVSPQRLVA-AGFGEFQ------PLDTGTTEEAYKRNRRIEL 333


>gi|332664792|ref|YP_004447580.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333606|gb|AEE50707.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 256

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQR-----NTPMFDKSSSIPLPETI--VVLQKIGEVLAHS 262
           N V G+      +G+     D R     + PM  K+ S  L +     V Q    + ++ 
Sbjct: 105 NEVNGIFSAYKSSGLTAEERDGRLYLMTSAPMDYKTGSYALSKAQREAVAQLATTLKSNP 164

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
              I + GHTD+   R  A  +DNW LS  R+ +  + L+K+GVS  +++ +  G    +
Sbjct: 165 KLKILVEGHTDSDKVRGGAAYQDNWELSSKRSLAICRELIKNGVSPAQVATVGRGETMPK 224

Query: 320 LKIASDPMNSANRRIDILVE 339
              ++    +ANRR D++ +
Sbjct: 225 ADNSTKEGKAANRRSDVVAD 244


>gi|198276042|ref|ZP_03208573.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135]
 gi|198271671|gb|EDY95941.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135]
          Length = 280

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL   TE+ + I GHTD  P      +DNW LS+ RA S  ++L++
Sbjct: 176 ALGKLAEVLNKQTEIDVCIEGHTDNKPIHTAQFKDNWDLSVIRATSVVRILIE 228


>gi|94263332|ref|ZP_01287147.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456287|gb|EAT06417.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 35/135 (25%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---------------------AHSTEVISIRGHTDAS 275
           F    +I   E +  L K+G+VL                     A   E + I GHTD  
Sbjct: 116 FPSGQAILPEEELAKLAKVGDVLVDTLPCYTADPPAYLNCSPEHAGKLESVFIEGHTDNV 175

Query: 276 PFRNIAR---DNWRLSLDRAYSAYQVLM---------KSGVSEDRISKISGFAHHRL--K 321
           P R+ +R   DNW LS  RA  AY+ ++          +  +   I  +SG+   R   +
Sbjct: 176 PLRDGSRKFQDNWDLSAQRAIFAYRSMVIGEQPLLGQLTNTAGFPIFSVSGYGEGRPRNR 235

Query: 322 IASDPMNSANRRIDI 336
             +   ++ANRRID+
Sbjct: 236 YEAPTADAANRRIDL 250


>gi|239905381|ref|YP_002952120.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239795245|dbj|BAH74234.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 234

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94
           + YADF+T +MAFFL++W++ +    TK+ +   F               D+  P +  +
Sbjct: 1   MAYADFVTAMMAFFLLLWLVVSLKPQTKQELSLVFQ--------------DKNVPSKEKT 46

Query: 95  QN--KIDLSIDEHITKNSVDLKIGSTNQKK 122
           QN  K+   I     K S + K+   N+ K
Sbjct: 47  QNLEKVPTFISPDAIKGSPEFKLSQENKLK 76


>gi|104782795|ref|YP_609293.1| flagellar motor protein MotD [Pseudomonas entomophila L48]
 gi|95111782|emb|CAK16506.1| flagellar motor protein MotB [Pseudomonas entomophila L48]
          Length = 285

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K I Q           A  G+F   N PER
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKQISQ-----------ALIGVF---NDPER 61

Query: 93 S 93
          S
Sbjct: 62 S 62



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T R   L   I+  ++ +F  + ++P      +++K+ ++L      + + G TD  P R
Sbjct: 122 TVRGNELWVEIELNSSLLFASADAMPSDVAFEIIEKVAKILKPFANPVHVEGFTDNLPIR 181

Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
                 NW LS  RA S  ++L   GV+  R++ + G+  ++    +D  +  + NRR+ 
Sbjct: 182 TAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTADGRARNRRVV 240

Query: 336 ILV 338
           +++
Sbjct: 241 LVI 243


>gi|126697829|ref|YP_001086726.1| chemotaxis protein [Clostridium difficile 630]
 gi|255099425|ref|ZP_05328402.1| chemotaxis protein [Clostridium difficile QCD-63q42]
 gi|115249266|emb|CAJ67079.1| Flagellar motor rotation protein MotB (Chemotaxis protein MotB)
           [Clostridium difficile]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           QDL  K++++       N+   V  +    GIL+ + D   + +FD   S    ++   L
Sbjct: 90  QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKVDSKATL 139

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            K+ +++      I I GHTD  P ++   + NW LS  RA S  +  ++    + R+  
Sbjct: 140 NKVYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFS 199

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338
            +G   ++  ++++     + NRR++IL+
Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228


>gi|114563544|ref|YP_751057.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114334837|gb|ABI72219.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRA 292
           T +F   ++ P  +   +L KI   L  +   I I GHTD  P F +    NW LSL RA
Sbjct: 321 TELFASGNTQPRSDFEAILAKIALTLESTDGKILITGHTDDEPIFTSKYPSNWHLSLARA 380

Query: 293 YSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            S   VL  S     R+  +  G +  R+   ++   + NRRI+I
Sbjct: 381 TSIANVLANSASLSGRLWPEGRGESEPRVVNDNEQNRALNRRIEI 425


>gi|319790576|ref|YP_004152209.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
 gi|317115078|gb|ADU97568.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 71/135 (52%), Gaps = 10/135 (7%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +++D   K V+ E  R  +++     +++ +F  +S+   PE +  LQ+I + L  + + 
Sbjct: 113 VISDKRPKAVVKEPGRVKVVL-----KDSVLFGLNSAELKPEAVKELQRIAQTLKENPKT 167

Query: 266 -ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G+TD +      + N +LS +RA +  +VL+++GV  +RI        + +    
Sbjct: 168 TVVVVGYTDNT---GSLKYNLKLSKERAEAVKKVLVEAGVRPERILVFGCGPKNPIAPND 224

Query: 325 DPMNSA-NRRIDILV 338
            P + A NRR++IL+
Sbjct: 225 TPQHRALNRRVEILI 239


>gi|269137375|ref|YP_003294075.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202]
 gi|267983035|gb|ACY82864.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202]
 gi|304557476|gb|ADM40140.1| Outer membrane protein [Edwardsiella tarda FL6-60]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
           ++G     TR G  I +++  N   FD +SS   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TD++  R++   N RLS  RA S    L+  GVS  RI  I     + +   S     A
Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRIRTIGMGPANPIATNSTAAGKA 207

Query: 331 -NRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|311746921|ref|ZP_07720706.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
 gi|126578612|gb|EAZ82776.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
          Length = 562

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ET  VL ++ E L+ ++ V + I GHTD     ++ +    LSLDRA S    L+  GV+
Sbjct: 470 ETEAVLSELAEFLSENSSVKLRINGHTDGGGDPSLNKG---LSLDRARSVRDYLVDHGVT 526

Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
            + + +I+G+   R  IAS+   S    NRR+++ V
Sbjct: 527 FENL-RIAGWGGTR-PIASNATESGRSKNRRVELEV 560


>gi|229141242|ref|ZP_04269781.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
 gi|229198660|ref|ZP_04325361.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228584819|gb|EEK42936.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228642283|gb|EEK98575.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G+ ++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 106 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 162

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN--SANRR 333
           N     NW LS  RA +  QVL+++   E +  K S  G+  +R    +D     + NRR
Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRR 220

Query: 334 IDILV 338
           +++ +
Sbjct: 221 VEVFI 225


>gi|228964710|ref|ZP_04125817.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794960|gb|EEM42459.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           EKI++   KKR+ +L KK    L   V +N +  V      TG+ + I+D     +FD  
Sbjct: 74  EKIIS---KKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL---IFDTG 123

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
            +   PE   ++ ++          I + GHTD+ P  N     NW LS  RA +    L
Sbjct: 124 DANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHL 183

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++    +D+     G+A  +  + +D   +  + + +L
Sbjct: 184 IEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKTVALL 221


>gi|222087026|ref|YP_002545561.1| OmpA family protein [Agrobacterium radiobacter K84]
 gi|221724474|gb|ACM27630.1| OmpA family protein [Agrobacterium radiobacter K84]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD  P     R  DNW LS  RA +  + L+  GV  DR+   +GF   +   
Sbjct: 242 VLRVDGHTDNVPLSGNGRYPDNWALSSARAIAVVKFLIAQGVPADRLVA-AGFGEFQPIA 300

Query: 323 ASDP--MNSANRRIDI 336
             D     + NRRI++
Sbjct: 301 PGDTPEARATNRRIEL 316


>gi|46578465|ref|YP_009273.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603951|ref|YP_968351.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46447876|gb|AAS94532.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120564180|gb|ABM29924.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311232393|gb|ADP85247.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P ++ +L  + +VLA     +++  HTDA+       D W LS  RA S  +  ++ G+ 
Sbjct: 146 PASLRLLDTLTDVLAGLDADVNVSAHTDAT---EGGADPWDLSDRRALSVLEHFLQRGMD 202

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             R S +SG+   R   AS    +A  NRR++ILV+
Sbjct: 203 PARFS-VSGYGPDRPLDASASPEAAQRNRRVEILVK 237


>gi|145298724|ref|YP_001141565.1| flagellar motor protein MotB [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851496|gb|ABO89817.1| Flagellar motor component MotB [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFN--- 70
          ++ KKK    + P N   W + YADFMT+L A F+V++    A   +T+  I+ +     
Sbjct: 1  MVAKKKK--PEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLG 58

Query: 71 -------PFGKNLMTASKGIFDEQNPPERSSQNK 97
                 P G  +M    GI + ++    SS +K
Sbjct: 59 KIGLISPPAGSPVMQGGTGILEPESRTTPSSPDK 92



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 23/114 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293
           +F   S+   P+ I ++ KI  +LA+    + + GHTD S  P   + R NW LS+ RA 
Sbjct: 172 LFPADSAFLQPQFIPLVHKIAGILANIPGKVVVTGHTDNSQAPL-ELYRSNWELSVLRAA 230

Query: 294 SAYQVLM-----------KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           S   +++             GV++ +    +  A HR          ANRR++I
Sbjct: 231 SIVHIMLTDPKLDATRVIAQGVADAQPRYPNDTAEHR---------QANRRVEI 275


>gi|239905020|ref|YP_002951759.1| hypothetical protein DMR_03820 [Desulfovibrio magneticus RS-1]
 gi|239794884|dbj|BAH73873.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 18/163 (11%)

Query: 191 RLQDLAKK---ISSTLSGLVADNIVKG------VLFETTRTGILISIIDQRNTPMFDKSS 241
           R QDL +K   + +    LVAD  ++G      +     R  + I+ +D+    +F   S
Sbjct: 68  RAQDLERKTEELQTAYDALVAD--LRGEVDSRQIRVRQFREKLEINFVDKI---LFPSGS 122

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           +   P    +L ++G VLA   +  I + GHTD  P  + +   NW LS  RA S  + L
Sbjct: 123 AEISPRGRDILTRVGAVLAKVKDKSIYVVGHTDNVPIHSALFPSNWELSASRAASVIRHL 182

Query: 300 MKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
            +S G++ +R + +   F       A+      NRR+DI+V D
Sbjct: 183 SESGGLAPERFTAMGRAFYQPVASNATPEGRQENRRVDIIVAD 225


>gi|238918002|ref|YP_002931516.1| outer membrane lipoprotein [Edwardsiella ictaluri 93-146]
 gi|238867570|gb|ACR67281.1| inner membrane lipoprotein YiaD [Edwardsiella ictaluri 93-146]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
           ++G     TR G  I +++  N   FD +SS   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TD++  R++   N RLS  RA S    L+  GVS  RI  I     + +   S     A
Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRIRTIGMGPANPIATNSTAAGKA 207

Query: 331 -NRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|325953665|ref|YP_004237325.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323436283|gb|ADX66747.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+    +++ +  I ++L A+ T  + I G+TD +    I   N ++S +RA   
Sbjct: 114 FDINKSVITDNSLIQIDNIAKILKAYPTATLKIGGYTDNTGDAAI---NKKISTNRADEV 170

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            + L+  G+S +RIS       H L  A+D     + NRR+DI +
Sbjct: 171 AKALVNKGISANRISTEGYGDQHFLCEANDTDLCRAQNRRVDIRI 215


>gi|300855151|ref|YP_003780135.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
 gi|300435266|gb|ADK15033.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  QD   +I  TL   +  D     V  E ++ G+ ISI   +   +F+   +  L   
Sbjct: 89  KTEQDTMNEIKKTLDAKIKQDGYDDKVKVEISKDGLGISI---QEAILFNSGDAEVLTHI 145

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  I E++ +    I I GHTD  P  N   R NW LS  RA +    ++K+G    
Sbjct: 146 HPLLISISEMIRNLDNNIRIAGHTDNVPIHNSKFRSNWDLSAMRAINVMNFMVKNG--GI 203

Query: 308 RISKISGFAHHRLKIASDPMN----SANRRIDILV 338
            I+K+S  A+   +  S  +     + NRR++I +
Sbjct: 204 NITKVSIQAYSEYQPKSTNLTKEGRAQNRRVEIFI 238



 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +W I YAD +T+L+A F+VM+ I+  D +    I Q FN
Sbjct: 15 TWLIPYADMLTLLLALFIVMFAISKVDQEKLAKISQQFN 53


>gi|298530631|ref|ZP_07018033.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510005|gb|EFI33909.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 274

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTD------ASPFRNIARD-----NWRLSLDRAYSA 295
           E I VL K+  VL      + + GHT        + ++ +  D      WRLSLDRA + 
Sbjct: 136 EGIEVLDKVVPVLKDLEYPVLLAGHTSLVRDEFGAGWQALKDDVIINPTWRLSLDRALNV 195

Query: 296 YQVLMKSGVSEDRISKISGFAHH--RLKIASDPMNSANRRIDILVEDR 341
           Y+ +M+ GV  + + ++  F     R    ++     NRR++I+++ R
Sbjct: 196 YRYIMEQGVDPEMV-RLEAFGEFQPRYGTRTEANRRQNRRVEIVLDRR 242


>gi|120552993|ref|YP_957344.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120322842|gb|ABM17157.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSG 303
           PE I +++++  VL+  +  + + GH+D  P  +   R NW LS  RA S  +++++   
Sbjct: 162 PEMIPIIERVVSVLSACSGDVVVSGHSDDRPISSSQYRSNWDLSAARAVSVVHELVLNRD 221

Query: 304 VSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338
           +  +R+   +G A  R L   + P N A NRR++I +
Sbjct: 222 IPAERVVA-AGRAETRPLAPNTSPENRAINRRVEIAI 257


>gi|229591826|ref|YP_002873945.1| flagellar motor protein MotD [Pseudomonas fluorescens SBW25]
 gi|229363692|emb|CAY51066.1| putative chemotaxis protein [Pseudomonas fluorescens SBW25]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K I Q
Sbjct: 19 WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISQ 53



 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N +      T R   L   I+  ++ +F  + ++P  +   +
Sbjct: 103 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFASADAMPSDQAFTI 156

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + K+  +L      I + G TD  P  N A+   NW LS  RA S  ++L   GV+  R+
Sbjct: 157 IDKVASILRPFENPIHVEGFTDNFPI-NTAQYPTNWELSSARAASIVRMLAMQGVNPGRL 215

Query: 310 SKISGFAHHRLKIASDPM---NSANRRIDILV 338
           + + G+   +  +A++      + NRR+ ++V
Sbjct: 216 ASV-GYGEFQ-PVANNATVEGRARNRRVVLVV 245


>gi|327187188|dbj|BAK08928.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+G +L+    ++ + GHTD+ P  N     NW LS  RA S  + L+++   + +  
Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211

Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             +G+   R  + +  + +   NRR+ I++ D
Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243


>gi|229520255|ref|ZP_04409681.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM
           11079-80]
 gi|167832518|gb|ACA01828.1| hypothetical protein VPI2_0011c [Vibrio cholerae]
 gi|229342621|gb|EEO07613.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM
           11079-80]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 69/164 (42%), Gaps = 34/164 (20%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256
           L   NI+  V  E  +  +++ I D        +S        SSIP   TI   ++ IG
Sbjct: 64  LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123

Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300
            VL HS           + I I GHTD+       + NW LS DRA S + V        
Sbjct: 124 VVL-HSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182

Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336
            K G  E+    ++  +SG+A  R   L  ++    S NRRIDI
Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLHESNQQEKSQNRRIDI 226


>gi|34763480|ref|ZP_00144424.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886853|gb|EAA23981.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 157

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 30  VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 83  FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141

Query: 342 Q 342
           +
Sbjct: 142 E 142


>gi|332669204|ref|YP_004452212.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332338242|gb|AEE44825.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           E +S+ GH +  P       NW LS DRA    + L++  G+   RI  + GF   R  +
Sbjct: 207 ENVSVEGHANVIPVSGRYPTNWELSADRATQVLRHLVEVDGMPGPRIMAV-GFGDTRPLV 265

Query: 323 ASDPMN--SANRRIDILV 338
           A D     +ANRR+D+++
Sbjct: 266 AGDSPEALAANRRVDLVI 283


>gi|288553786|ref|YP_003425721.1| flagellar motor protein MotS [Bacillus pseudofirmus OF4]
 gi|34485061|gb|AAB94398.2| channel protein [Bacillus pseudofirmus OF4]
 gi|288544946|gb|ADC48829.1| Flagellar motor rotation protein motS [Bacillus pseudofirmus OF4]
 gi|327187185|dbj|BAK08926.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+G +L+    ++ + GHTD+ P  N     NW LS  RA S  + L+++   + +  
Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211

Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             +G+   R  + +  + +   NRR+ I++ D
Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243


>gi|327187191|dbj|BAK08930.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+G +L+    ++ + GHTD+ P  N     NW LS  RA S  + L+++   + +  
Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211

Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             +G+   R  + +  + +   NRR+ I++ D
Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243


>gi|294012218|ref|YP_003545678.1| OmpA-family protein [Sphingobium japonicum UT26S]
 gi|292675548|dbj|BAI97066.1| OmpA-family protein [Sphingobium japonicum UT26S]
          Length = 236

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD +   PLPE    +  + +  A        + G+TD S      R N  LSL RA +
Sbjct: 132 FFDWNMDTPLPEGAGTISTLTQTAAQCGWTRFGVTGYTDTSGSN---RYNDGLSLRRARN 188

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-----DPMNSANRRIDI 336
              ++ + GVS D I+ ++G    +LKI +     +PM   NRR++I
Sbjct: 189 VASLMSQGGVSADAIT-VTGLGETQLKIETADGVREPM---NRRVEI 231


>gi|327187194|dbj|BAK08932.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+G +L+    ++ + GHTD+ P  N     NW LS  RA S  + L+++   + +  
Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211

Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             +G+   R  + +  + +   NRR+ I++ D
Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243


>gi|294638308|ref|ZP_06716561.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
 gi|291088561|gb|EFE21122.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
           ++G     TR G  I +++  N   FD +SS   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329
           +TD++  R++   N RLS  RA S    L+  GV+  RI  I  G A+     ++    +
Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALITQGVAAGRIRTIGMGPANPIASNSTAAGKA 207

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|292493578|ref|YP_003529017.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291582173|gb|ADE16630.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 279

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ + +++  TL  L+ +++V+       R G     ++  +  +F   S+    E + V
Sbjct: 113 LKAITEEVRITLQPLIDEDLVR------LRQGQEWLEVEINDRVLFTSGSAKLEAEAVPV 166

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+ ++L      I + G TD  P    +   NW LS  RA S   +  + GVS  R++
Sbjct: 167 LKKLAKILRRFPNPIQVEGFTDNVPISTAVFPSNWELSSARAASVVHLFDRFGVSPARMA 226

Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
            I G+  +R  +A +        NRR+ +++  R
Sbjct: 227 AI-GYGQYR-PVADNSTPEGRRRNRRVALVILGR 258



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ +++ ++   + + +
Sbjct: 16 WLVSYADFITLLFAFFVVMYAVSSVNEGKYRVLSE 50


>gi|256846250|ref|ZP_05551707.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|256718019|gb|EEU31575.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 64  VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 116

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 117 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 175

Query: 342 Q 342
           +
Sbjct: 176 E 176


>gi|222149694|ref|YP_002550651.1| hypothetical protein Avi_3670 [Agrobacterium vitis S4]
 gi|221736676|gb|ACM37639.1| flagellar motor protein [Agrobacterium vitis S4]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD        R  DNW LS  RA S  + L+  GV  DR++  +GF   +   
Sbjct: 264 VLRVDGHTDNVQLSGNGRYPDNWALSAARAVSVVKFLISKGVPADRLAA-AGFGEFQPIA 322

Query: 323 ASDP--MNSANRRIDILVEDR 341
             D     + NRRI++ + +R
Sbjct: 323 PGDTPEARAQNRRIELKLTER 343


>gi|42783685|ref|NP_980932.1| flagellar motor protein MotB [Bacillus cereus ATCC 10987]
 gi|42739614|gb|AAS43540.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus ATCC 10987]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G+ ++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 134 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 190

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N     NW LS  RA +  QVL+++   +       G+  +R    +D     + NRR++
Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRRVE 250

Query: 336 ILV 338
           + +
Sbjct: 251 VFI 253


>gi|206977733|ref|ZP_03238624.1| chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|217961995|ref|YP_002340565.1| flagellar motor protein MotB [Bacillus cereus AH187]
 gi|222097978|ref|YP_002532035.1| flagellar motor protein motb [Bacillus cereus Q1]
 gi|206744034|gb|EDZ55450.1| chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|217067135|gb|ACJ81385.1| chemotaxis protein MotB [Bacillus cereus AH187]
 gi|221242036|gb|ACM14746.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus Q1]
 gi|324328404|gb|ADY23664.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T  G+ ++I++     +FD   +    E++ + +++  +L + S   I++ GHTD  P  
Sbjct: 134 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 190

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           N     NW LS  RA +  QVL+++   +       G+  +R    +D     + NRR++
Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRRVE 250

Query: 336 ILV 338
           + +
Sbjct: 251 VFI 253


>gi|256846747|ref|ZP_05552203.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|256717967|gb|EEU31524.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 63  VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 115

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++      + NRR++  +  R
Sbjct: 116 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 174

Query: 342 Q 342
           +
Sbjct: 175 E 175


>gi|261212057|ref|ZP_05926343.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341]
 gi|260838665|gb|EEX65316.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 63/324 (19%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85
           W   +AD M++LM FF+++   +  D    K I       FG +N +      KG  I  
Sbjct: 2   WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++  P R     ID+     I + ++D+    T Q  ++Q  E++               
Sbjct: 62  QEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD------------RAG 100

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
              RDS +   L      E S+ + +N        ++  A    ++++ +A+ I   LS 
Sbjct: 101 GNQRDSGQ---LTGGQSAETSVQENQNTQ---SEMQQQQAQAMSEQMETVAESIKKALSR 154

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
            +    ++    E     I I I   R    F + S+   P+   ++++I +++      
Sbjct: 155 EIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGK 208

Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323
           + + GHTD       + R NW LS  RA S  Q           + K+ GF H RL++  
Sbjct: 209 VRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFDHQRLQVRG 258

Query: 324 ---SDPMN--------SANRRIDI 336
              + P+         + NRR++I
Sbjct: 259 MADTQPLGPNDTEAQRTINRRVEI 282


>gi|332703401|ref|ZP_08423489.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553550|gb|EGJ50594.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 12/105 (11%)

Query: 247 ETIVVLQKIGEVL-AHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
           + + VL+ + ++L  H+ + I+IRG TD   P  N   +DNW +S  R+ +  +VLM  G
Sbjct: 148 QGVAVLRDLKDLLIKHADQRINIRGFTDDVRPSGNSRFKDNWEISAMRSVNVLRVLMSLG 207

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDRQG 343
           +   R++  +G A         P NS      NRRI+I +E R G
Sbjct: 208 MEPTRLTA-TGLADLEPLF---PNNSTENRARNRRIEITLEKRVG 248


>gi|118588924|ref|ZP_01546331.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614]
 gi|118438253|gb|EAV44887.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614]
          Length = 234

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LA +T VI   GHTD     +    N RLS DRA +  Q L+  GVS DR+  ++ +   
Sbjct: 158 LAKATFVI--EGHTDGIGSTSY---NQRLSEDRAQAVTQFLVNLGVSRDRLKTVA-YGET 211

Query: 319 RLKIASDPMNSANRRID 335
           R K+A D  + ANRR++
Sbjct: 212 RPKVA-DVNDPANRRVE 227


>gi|114777571|ref|ZP_01452552.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
 gi|114552042|gb|EAU54559.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
          Length = 258

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 266 ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           I I GHTDA+P +N     NW LS  RA + +  L + GV   R+        H +K   
Sbjct: 157 IQIEGHTDATPTKNSDYPSNWELSAARAMAVFHELAEQGVPRGRMIAAGMGDQHPIKGHP 216

Query: 325 DPMNSANRRIDILVEDR 341
           +     +RR+DI ++ R
Sbjct: 217 E----LSRRVDITLKFR 229


>gi|146278244|ref|YP_001168403.1| hypothetical protein Rsph17025_2208 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556485|gb|ABP71098.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-- 319
           +I + GHTD  P       RDNW LS  RA S  + + ++ G    R++  +GF  +R  
Sbjct: 445 IIRVDGHTDDVPLSGFGAFRDNWELSSARALSVVRYMQQTLGFPPSRLAA-TGFGEYRPV 503

Query: 320 LKIASDPMNSANRRIDILVEDR 341
           ++ +S    + NRRI++ + +R
Sbjct: 504 VEGSSPEARAQNRRIELKLTER 525


>gi|34763583|ref|ZP_00144517.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886747|gb|EAA23886.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 30  VLDERSLHFDFDKSNV--KPQYYDLLKNIQEFVEQNNYEITIVGHTDS-----IGSNAYN 82

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 83  FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141

Query: 342 Q 342
           +
Sbjct: 142 E 142


>gi|312962248|ref|ZP_07776740.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311283585|gb|EFQ62174.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K I Q
Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ 51



 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N +      T R   L   I+  ++ +F  + ++P  +   +
Sbjct: 101 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFASADAMPSDQAFTI 154

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +L      + + G TD  P        NW LS  RA S  ++L   GVS  R++
Sbjct: 155 IDKVAAILKPFENPVHVEGFTDNVPISTAQYPTNWELSSARAASIVRMLAMQGVSPGRLA 214

Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILV 338
            + G+   +  +A++      + NRR+ ++V
Sbjct: 215 SV-GYGEFQ-PVANNATVEGRARNRRVVLVV 243


>gi|224417757|ref|ZP_03655763.1| motility protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|253827100|ref|ZP_04869985.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|313141298|ref|ZP_07803491.1| motb protein [Helicobacter canadensis MIT 98-5491]
 gi|253510506|gb|EES89165.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|313130329|gb|EFR47946.1| motb protein [Helicobacter canadensis MIT 98-5491]
          Length = 256

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 263 TEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           T +I   GHTD  P R   I  DN  LS+ R  +  ++++  G+S++R+  + G      
Sbjct: 160 TALIKAIGHTDNVPMRENPIFADNLELSIARGVNVAELIITEGISKERV--LGGGEGEFS 217

Query: 321 KIASD---PMNSANRRIDILV 338
            IAS+    + + NRR+D+ +
Sbjct: 218 PIASNKIPELRAKNRRVDLYI 238


>gi|117621021|ref|YP_857806.1| flagellar motor protein MotB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562428|gb|ABK39376.1| sodium-driven polar flagellar protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 299

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LAK ++  +   + D  ++    E     I+I I   R    F   S+   P+   V++K
Sbjct: 142 LAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPVVRK 195

Query: 255 IGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312
           +  +L      I+I GHTD A+    + + NW LS  RA + A+Q++   G    R+  +
Sbjct: 196 VAALLKDVPGEITISGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRLV-V 254

Query: 313 SGFAHHRLKIA-SDPMN-SANRRIDI 336
            G A  +  +  + P N   NRR++I
Sbjct: 255 QGMADSQPLVPNTSPENRRMNRRVEI 280


>gi|66045239|ref|YP_235080.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63255946|gb|AAY37042.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 271

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N +LS DR
Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  G+ E RI  + G+       A  S+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGIDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265


>gi|320354327|ref|YP_004195666.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122829|gb|ADW18375.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD+  +   P +  +L+K+ +++      + I GHTD++P       NW LS+ RA + 
Sbjct: 126 LFDEGQATLNPASYPILRKVADIIRPLPMSMRIEGHTDSTPMAGATTSNWDLSVARAVAV 185

Query: 296 YQVLMKSGV-SEDRISKISGFAHHRLKIASDPMN---SANRRIDILV 338
                +  + + DR+S  +G+   R  +A +      + NRR+D ++
Sbjct: 186 MSFYHRGELFALDRMSA-AGYGDTR-PLAPNTTKDNMAKNRRVDFVL 230


>gi|261414988|ref|YP_003248671.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371444|gb|ACX74189.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326246|gb|ADL25447.1| ompA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 27/132 (20%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           D + KG+ FE     +L             KSS   L + I +L+KI EV       + +
Sbjct: 539 DYLKKGIQFEFDSAKLL-------------KSSYPTLDDIIALLEKIPEVK------LEV 579

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SD 325
           +GHTD     +    N +LS DRA+S        G++ DR+  I GF   R+ +A   +D
Sbjct: 580 QGHTDIVGTEDY---NQKLSEDRAHSVTDYFQSKGIAADRLRAI-GFG-TRMPLADNVTD 634

Query: 326 PMNSANRRIDIL 337
              + NRR++++
Sbjct: 635 EGRAKNRRVELI 646


>gi|118588929|ref|ZP_01546336.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614]
 gi|118438258|gb|EAV44892.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614]
          Length = 533

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +S+ L+GL           E ++ G  I +   R    FD +++   PE  ++++++ + 
Sbjct: 391 VSAQLAGLEG--------LEISQAGPAIML---RMRAQFDVAAATLRPEFQLLVEQVSQT 439

Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
           L      I + GHTD+ P RN  R   NW LS++RA +   V+
Sbjct: 440 LDQVDGEILVVGHTDSDPIRNNPRFPTNWHLSVERAKAVAAVM 482


>gi|325287672|ref|YP_004263462.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324323126|gb|ADY30591.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 39/246 (15%)

Query: 109 NSVDLKIGSTNQKK-----QYQRLEN-NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           NS  +K+ S  ++K     + + LE+ N F  +N+Q       +LT  S KG +     +
Sbjct: 41  NSATVKLNSCIEEKATADARLRTLEDQNDFLKANNQVLVDNMGNLTDLSAKGAE-----N 95

Query: 163 LEKSIN--KEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGL----VADNIVKGV 215
           LEKS+   KE++  +  L+     A+ R+  +   L + +   L  L    +  ++ KGV
Sbjct: 96  LEKSLESLKEKDLTIRKLND----AITRRDSVNLSLVQSLKGVLGNLDDEDIEISVEKGV 151

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
           +F        +SI D+    +F   S         VL K+ +V+ +  +    + GHTDA
Sbjct: 152 VF--------VSISDKL---LFSSGSYNVATRAKEVLGKVAQVVNNKPDFEFMVEGHTDA 200

Query: 275 SPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+R  +  DNW LS+ RA +  ++L  + GV   R++  +G + +    ++D   + NR
Sbjct: 201 VPYRKGVLLDNWDLSVKRATAVVRILQNEYGVDPKRMTA-AGRSQYIPVSSTDK--ARNR 257

Query: 333 RIDILV 338
           R  I+V
Sbjct: 258 RTRIVV 263


>gi|190895276|ref|YP_001985569.1| hypothetical protein RHECIAT_PC0000949 [Rhizobium etli CIAT 652]
 gi|190700937|gb|ACE95019.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652]
 gi|327193548|gb|EGE60440.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 21/130 (16%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEVI---SIRGHTDASPFR--N 279
           ++++ Q +TP   +S+   L +    ++  I  VL  + E+I   +I GHTD  P +  N
Sbjct: 318 VTLLLQSSTPELFQSARPELTKGFEPLVASIATVLKQNAELIGGITITGHTDNVPLQASN 377

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSAN 331
              +N RLS  RA +   +L  SGV   ++ K  G      + A++P+         +AN
Sbjct: 378 PLSNNQRLSEARAATIASLLAASGVPAGQL-KSQG------RAATEPLAGNDSREGRAAN 430

Query: 332 RRIDILVEDR 341
           RRI+IL++ R
Sbjct: 431 RRIEILIQKR 440


>gi|260432828|ref|ZP_05786799.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416656|gb|EEX09915.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 580

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 14/119 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIAR--DNW 285
           +FD  S++   E    + K+ E+L             VI + GHTD  P     R  DNW
Sbjct: 463 LFDPGSAVLSDEGKREIAKVAEILRSVAAEIPPELNWVIRVDGHTDNIPVSGAGRYRDNW 522

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVEDR 341
            LS  RA S  + +++  G+  +R++  +GF   + +  A  P   A NRRI++ + +R
Sbjct: 523 ELSQGRALSVVRYMVEELGIPPNRLAA-NGFGEFQPVDTADTPEARAKNRRIELKLTER 580


>gi|317151983|ref|YP_004120031.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942234|gb|ADU61285.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI- 309
           +L+ +  VL  +   +++ GHTDAS   +   D + LS DRA +    L+ +GV + R  
Sbjct: 145 LLEALTPVLLFTAAPVNVAGHTDAS---DTGADPYALSGDRALAVLSFLVDAGVPDRRFS 201

Query: 310 -----SKISGFAHHRLKIASDPMNSANRRIDILVE 339
                S +         +AS    S NRR++IL++
Sbjct: 202 LSAYGSDVPALDERDRPVAS----SMNRRVEILLK 232


>gi|146306332|ref|YP_001186797.1| flagellar motor protein MotB [Pseudomonas mendocina ymp]
 gi|145574533|gb|ABP84065.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++++D    +   L G +++  ++  L E  R  IL   +++R +  F   S+   P   
Sbjct: 121 QQVRDSVAALQQLLQGELSEGRLQ--LLEERRRIILR--VEERGS--FASGSAELTPAFE 174

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + E+L      +++ GHTD  P      R NW LS  RA +    L+ +   E +
Sbjct: 175 DMLLGMSELLVEIPGTLTVEGHTDDVPISTARFRSNWDLSAARASAVANALLLNPALEPQ 234

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
             ++ GFA  R ++A+D     + NRR++I+++
Sbjct: 235 RLEVKGFADTRPRVANDSAQQRALNRRVEIIID 267


>gi|115372711|ref|ZP_01460017.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1]
 gi|310823482|ref|YP_003955840.1| thrombospondin type 3 repeat protein, outer membrane
            domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|115370192|gb|EAU69121.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1]
 gi|309396554|gb|ADO74013.1| Thrombospondin type 3 repeat protein, outer membrane domain protein
            [Stigmatella aurantiaca DW4/3-1]
          Length = 5149

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAYS 294
            F     + LP++  +L+++ +VL    E+  +R  G+TD    +    +N RLS  RA +
Sbjct: 5035 FTSKMDVILPKSFSLLKQVAQVLKAHPEIEKVRVEGYTDD---QGPDEENLRLSERRAKA 5091

Query: 295  AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338
              + L++ GV+ +R+  + GF   R  +AS+  +    ANRR++  V
Sbjct: 5092 VLERLVQEGVAAERLDSV-GFGEAR-PVASNKTSKGRDANRRVEFSV 5136


>gi|317129962|ref|YP_004096244.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474910|gb|ADU31513.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 258

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E  L  K+++  Q L   +   L  L A+N+ + +       G+++ + +Q    +F+ +
Sbjct: 90  ENFLDSKKEENNQQLDDLLVEVLDFLEANNLYESISASRDDRGVVLVLQEQV---LFESA 146

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
            +  + +    L K+G ++      I + GHTD+ P        NW LS  RA S  + L
Sbjct: 147 RAELISDATAFLDKVGTLIESVPNPIMVEGHTDSRPIETFQFPSNWELSGARASSVIRYL 206

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338
           + +  + + R   + G+   R  IA +  N     NRR+ I++
Sbjct: 207 VDNHDLDQSRFVSV-GYGDTR-PIAPNTTNENLQKNRRVVIVI 247


>gi|83854840|ref|ZP_00948370.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1]
 gi|83842683|gb|EAP81850.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1]
          Length = 582

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
           VI + GHTD  P   +    DNW LS  RA S  + ++   G++ +R++  +GF  ++  
Sbjct: 502 VIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQ-P 559

Query: 322 IASDPMNSA---NRRIDILVEDR 341
           +AS    +A   NRRI++ + +R
Sbjct: 560 VASGNTEAARAQNRRIELKLTER 582


>gi|311277523|ref|YP_003939754.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308746718|gb|ADO46470.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD SS+   P     L  +  VL  +    +++ G
Sbjct: 92  MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYEKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD++  +++   N RLS  RA S    L+  GV+ +RI + +G       IAS+     
Sbjct: 151 YTDSTGSKDL---NMRLSQQRADSVASSLITQGVAANRI-RTTGMGQAN-PIASNSTAEG 205

Query: 328 NSANRRIDILVEDRQ 342
            + NRR++I +   Q
Sbjct: 206 KAQNRRVEITLSPLQ 220


>gi|229592593|ref|YP_002874712.1| putative lipoprotein [Pseudomonas fluorescens SBW25]
 gi|229364459|emb|CAY52284.1| putative putative lipoprotein [Pseudomonas fluorescens SBW25]
          Length = 163

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 251 VLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++Q+IG+ +L    E + I GHTDAS        N +LSL RA S   VLM  G+ E+ I
Sbjct: 74  IVQRIGKALLGVGIERVRIDGHTDASGKETY---NQQLSLRRAKSVATVLMSVGMKEENI 130

Query: 310 SKISGFAHHRLKIASDPM--NSANRRIDILV 338
            ++ G        ++D     + NRR+ I+V
Sbjct: 131 -QLRGLGSSEPVASNDTAAGRTENRRVSIVV 160


>gi|307721192|ref|YP_003892332.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979285|gb|ADN09320.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 265 VISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           ++ ++GHTD   P  N   +DNW LS  RA +    L+  GV   R+S  +GFA ++  I
Sbjct: 160 LVDVQGHTDNTGPGANSPYKDNWELSTARALAVLHELILDGVDPARMSA-TGFAQYQ-PI 217

Query: 323 ASDPMNSA---NRRIDI 336
           A++   +    NRR+++
Sbjct: 218 ATNATATGREKNRRVEL 234


>gi|157889031|dbj|BAF80974.1| fibronectin-binding protein [Campylobacter lari]
 gi|157889036|dbj|BAF80978.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++  +     N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
           ++++I +K  GF   +    +    + NRR++
Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|157889041|dbj|BAF80982.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++  +     N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
           ++++I +K  GF   +    +    + NRR++
Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|157889046|dbj|BAF80986.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++  +     N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
           ++++I +K  GF   +    +    + NRR++
Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|42524415|ref|NP_969795.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100]
 gi|39576624|emb|CAE80788.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
          W + YAD MT+L  FF++M+ ++  D    D  +K + +Y   FG N+   S  +  EQ
Sbjct: 26 WLVSYADMMTLLFGFFVLMYSMSRFDNTKFDLVRKEVAKY---FGGNIKEVSAALLAEQ 81


>gi|163789638|ref|ZP_02184076.1| chemotaxis motB protein [Carnobacterium sp. AT7]
 gi|159875170|gb|EDP69236.1| chemotaxis motB protein [Carnobacterium sp. AT7]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           NI      E  + GI ++I   + + +F   S+I        L  +GE++      + I 
Sbjct: 114 NITSQASVEYDQDGIYVNI---QESILFGSGSAIIADSGKQTLNDLGELIQKFDNAVVIE 170

Query: 270 GHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDR-------ISKISGFAHHRLK 321
           G+TD  P  N     NW LS  RA S  + L     SE+R        +K  G  H  + 
Sbjct: 171 GYTDNVPMYNANFSSNWELSTGRALSVLRYL-----SEERDVNPTRLAAKGYGEYHPLVP 225

Query: 322 IASDPMNSANRRIDI-LVEDRQ 342
             S+   S NRR++I +V D+Q
Sbjct: 226 NDSEENRSKNRRVNIVIVYDQQ 247


>gi|254302656|ref|ZP_04970014.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322848|gb|EDK88098.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R     FDKS+    PE   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 30  VLDERALNFDFDKSNV--KPEYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G++EDRI  I      +  IA++        NRR++  +  R
Sbjct: 83  FKLSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 141

Query: 342 Q 342
           +
Sbjct: 142 E 142


>gi|188996771|ref|YP_001931022.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931838|gb|ACD66468.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 264

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  ++   N+   V  E    G+ I I+D     +F   S+    E
Sbjct: 76  KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILDYI---LFPPCSTEINQE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  I EV+  +   + + GHTD  P     I   NW LS  RA +  + L+ +G  
Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192

Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDI 336
              +    G+A  +      P NS      NRRI+I
Sbjct: 193 PPYLFSAVGYADTK---PISPNNSELGRKLNRRIEI 225


>gi|222056198|ref|YP_002538560.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221565487|gb|ACM21459.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 349

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I I GHTD++P ++  R   NW LS  RA S  + L K G        ++G+  +    A
Sbjct: 254 IRIEGHTDSTPIKSKHRYASNWDLSAARAASVVRHLQKKGAVNPEFLTLAGYGPYAPAAA 313

Query: 324 SDPM--NSANRRIDI 336
           ++     S NRRI+I
Sbjct: 314 NNTSRGRSLNRRIEI 328


>gi|237756519|ref|ZP_04585048.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691319|gb|EEP60398.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 264

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  ++   N+   V  E    G+ I I+D     +F   S+    E
Sbjct: 76  KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILDYI---LFPPCSTEINQE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  I EV+  +   + + GHTD  P     I   NW LS  RA +  + L+ +G  
Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192

Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDI 336
              +    G+A  +      P NS      NRRI+I
Sbjct: 193 PPYLFSAVGYADTK---PISPNNSELGRKLNRRIEI 225


>gi|209522383|ref|ZP_03270996.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209497180|gb|EDZ97422.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD SS    P    VL ++ + L  + EV+ S+ GHTD++      + N  LS++RA S 
Sbjct: 41  FDTSSYTIKPSFAPVLDQLAQTLQQNPEVVASVVGHTDST---GSLQYNQTLSVNRAESV 97

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
              L + G++  R+S  +G   ++  IA   ++   +ANRR++I +
Sbjct: 98  TGYLTQRGIAPQRLSA-TGMGPNQ-PIADNNTEAGRAANRRVEIYL 141


>gi|304311123|ref|YP_003810721.1| Flagellar motor protein MotB [gamma proteobacterium HdN1]
 gi|301796856|emb|CBL45068.1| Flagellar motor protein MotB [gamma proteobacterium HdN1]
          Length = 359

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD-----------DTKKAIEQYFNPFGKNLMTASK 81
          W I YADF+T+L AFF+VM+ I++ +D           D  ++  +  NP       A+ 
Sbjct: 16 WVISYADFITLLFAFFVVMYSISSVNDGKYRVLSDSLVDAFQSASRTINPVSIGEKVATS 75

Query: 82 GIFD 85
          G F+
Sbjct: 76 GNFE 79



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L KI EVL  +   + + G TD  P R      NW LS  RA +  ++ +  GV+  R+
Sbjct: 178 LLGKISEVLKPADYSVQVEGFTDNVPIRTEQFPSNWELSAARAAAVVRLFVLGGVNPARL 237

Query: 310 SKISGFAHHRL--KIASDPMNSANRRIDILV 338
           + I G+A  R     A+    + NRRI+I+V
Sbjct: 238 AAI-GYADQRALGDNATAEGRALNRRINIIV 267


>gi|157889051|dbj|BAF80990.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++  +     N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
           ++++I +K  GF   +    +    + NRR++
Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|108758523|ref|YP_629116.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622]
 gi|108462403|gb|ABF87588.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622]
          Length = 267

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAY 293
           +F   S+    E    L+KI + L     ++I + GHTD  P        NW LSL RA 
Sbjct: 159 LFASGSARVGKEGEEALKKIADALKTVQGKIIRVEGHTDDVPTGGGQFPSNWELSLARAM 218

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  + L  +GV    +S  +G+  ++   A+D     S NRRI+I++
Sbjct: 219 AVVRSLQNAGVDPTFLS-AAGYGQYQPIAANDSAENRSLNRRIEIVL 264


>gi|330951673|gb|EGH51933.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 17/174 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232
           LS+E++  M  +++   LA + +   S       + D I+     ET R G+++++ D  
Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157

Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   + +    +  +L+ +  +  +   V+ I G+TD++  R    +N  LS DR
Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLTLSKDR 212

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           A +   VLM  G+ E RI ++ G+       A  S+   + NRR++I+  D +G
Sbjct: 213 AQAVADVLMDLGIDEKRI-QVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265


>gi|288957797|ref|YP_003448138.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288910105|dbj|BAI71594.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KI 322
           V+ + GHTD  P R     NW LS  RA S  + L+  G+  +R++  + F   +     
Sbjct: 387 VLRVDGHTDIKPVRFQFSSNWELSSARALSVVKFLIDQGIPAERLAA-AAFGEFQPIDPG 445

Query: 323 ASDPMNSANRRIDILVEDR 341
            SD   + NRRI+I ++ R
Sbjct: 446 TSDEALAKNRRIEIKLDQR 464


>gi|78189866|ref|YP_380204.1| OmpA domain-containing protein [Chlorobium chlorochromatii CaD3]
 gi|78172065|gb|ABB29161.1| OmpA domain protein [Chlorobium chlorochromatii CaD3]
          Length = 205

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           S+T + LV    VKG  ++  + G L  I  + ++   D+S+ + L +   +LQ+     
Sbjct: 73  SATTTTLVPAT-VKGYGYDQWQKGPLGDIFFEYDSATLDESAQMQLQQNAALLQQF---- 127

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
               E I I GH D    R  +  N  L   RA +A + LM+ GV   R+  +S F   R
Sbjct: 128 --IVESIQIEGHCD---IRGTSEYNLALGERRATTAKEYLMRLGVPASRLETVS-FGEER 181


>gi|194365634|ref|YP_002028244.1| flagellar motor protein MotD [Stenotrophomonas maltophilia
          R551-3]
 gi|194348438|gb|ACF51561.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59
          +W I YAD MT+L+AFF+VM+ I++ ++
Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42



 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  + EVL      + + GHTD  P        NW LS  RA S   +    GV   R++
Sbjct: 184 LASLAEVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLA 243

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
            + G+   R +  +D     NR   ++V
Sbjct: 244 MV-GYGQFRPREENDSAQGRNRNRRVMV 270


>gi|119470009|ref|ZP_01612814.1| putative chemotaxis protein [Alteromonadales bacterium TW-7]
 gi|119446719|gb|EAW27992.1| putative chemotaxis protein [Alteromonadales bacterium TW-7]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286
           II+  +  +F   S++       V++ + +++A     I +RG+TD    +N I R NW 
Sbjct: 153 IIELSSGMLFSSGSAVAHSRAKQVVKIVKDIIAPVDNYIRVRGYTDDETIKNEIFRSNWE 212

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LS+ RA S    L   G++  R++ I G+  +
Sbjct: 213 LSVARATSILVELEALGINSARMA-IEGYGQY 243


>gi|114321978|ref|YP_743661.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228372|gb|ABI58171.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322
           V+ + GHTD  P R      NW LS  RA +  + LM  G+  +R++  +GFA +H +  
Sbjct: 284 VLQVEGHTDRRPIRTAEFPSNWELSTARAQTIVRYLMDQGIPPERLAA-AGFAEYHPVDD 342

Query: 323 ASDPMNSA-NRRIDILVEDR 341
              P   A NRRI++ + +R
Sbjct: 343 RDTPEAWARNRRIELRLTNR 362


>gi|254523338|ref|ZP_05135393.1| MotB protein [Stenotrophomonas sp. SKA14]
 gi|219720929|gb|EED39454.1| MotB protein [Stenotrophomonas sp. SKA14]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59
          +W I YAD MT+L+AFF+VM+ I++ ++
Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42


>gi|19703598|ref|NP_603160.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713702|gb|AAL94459.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L  I E +  +   I+I GHTD+     I  +  N
Sbjct: 30  VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 83  FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141

Query: 342 Q 342
           +
Sbjct: 142 E 142


>gi|237752655|ref|ZP_04583135.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430]
 gi|229376144|gb|EEO26235.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430]
          Length = 233

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQKIGEVLAHSTEVISIR--GH 271
           V  E    G++I I ++    +F   S+ +  P  I  L+++   L    + + ++  GH
Sbjct: 88  VELEEAERGVIIRIPEEL---LFATGSAELTNPSGIAFLKRLSLELLRMPKAVLVKAIGH 144

Query: 272 TDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---P 326
           TD  P R   +  DN  LS+ R  +  ++L+K G+ ++RI  + G       IA++    
Sbjct: 145 TDNVPMRANAVFADNLELSVARGVNVAELLLKQGLEKNRI--LGGGEGEFSPIANNDIPA 202

Query: 327 MNSANRRIDILV 338
           + + NRR+D+ V
Sbjct: 203 LRAKNRRVDLYV 214


>gi|327438679|dbj|BAK15044.1| flagellar motor protein [Solibacillus silvestris StLB046]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-- 89
           SW + YAD +T+L+A F+V++  ++ D   +K +EQ    F  N+ T   G+ D  NP  
Sbjct: 18  SWLVPYADILTLLLALFIVLFASSSVD---EKKLEQMSAVF-TNIFTGGTGVMD--NPAI 71

Query: 90  ---PERSSQNKIDLSIDE----HITKNSVDLKIGSTNQKKQYQ 125
              P+ S+   I   I++      T+N VD  I     + Q++
Sbjct: 72  IQTPDNSTPTGISKYIEDQERLQETQNRVDEFIAINELEDQFE 114


>gi|23099679|ref|NP_693145.1| flagellar motor protein MotS [Oceanobacillus iheyensis HTE831]
 gi|22777909|dbj|BAC14180.1| flagellar motor aparatus [Oceanobacillus iheyensis HTE831]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           LA + +++  D   ++   +S  + +N +K V+        ++ ++ ++   +F+   + 
Sbjct: 92  LANEEEEKSTDELDELMMNVSQYLEENNLKDVITANRNERGVVLVLQEK--ILFESGEAE 149

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
            L E    L  IG +L+     +++ GHTD+ P  N     NW LS  RA S  +  +++
Sbjct: 150 ILEEAGPFLNHIGTLLSELDNQVNVEGHTDSRPISNYRYPSNWELSGARASSVVRYFIEA 209

Query: 303 -GVSEDRISKISGFAHH-RLKIASDPMN-SANRRIDILVED 340
             +   R S + G+A    L+  S+  N S NRR++I++ D
Sbjct: 210 ESLHMSRFSTV-GYADTVPLEPNSNEANMSKNRRVEIIILD 249


>gi|190574215|ref|YP_001972060.1| flagellar motor protein MotD [Stenotrophomonas maltophilia K279a]
 gi|190012137|emb|CAQ45760.1| putative chemotaxis protein MotB [Stenotrophomonas maltophilia
          K279a]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59
          +W I YAD MT+L+AFF+VM+ I++ ++
Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42



 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  + EVL      + + GHTD  P        NW LS  RA S   +    GV   R++
Sbjct: 184 LASLAEVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLA 243

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
            + G+   R +  +D     NR   ++V
Sbjct: 244 MV-GYGQFRPREENDSAQGRNRNRRVMV 270


>gi|149195189|ref|ZP_01872279.1| OmpA domain protein [Caminibacter mediatlanticus TB-2]
 gi|149134622|gb|EDM23108.1| OmpA domain protein [Caminibacter mediatlanticus TB-2]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           N  KG  F+  + G  I+   + N   FD +S+   PE +  ++K  E L +  +V   I
Sbjct: 259 NTPKG--FKVDQNGCAITYNFEIN---FDTNSAKIKPEYMPKIEKFAEFLKNHPDVKAEI 313

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PM 327
           +G+TD    R  A  N  LS  RA + Y+ L+K GV++D+I+ + G+       ++D P 
Sbjct: 314 QGYTDN---RGSATYNMILSEKRAKAVYEALLKLGVNKDQITFV-GYGEANPIASNDTPE 369

Query: 328 NSA-NRRI 334
             A NRR+
Sbjct: 370 GRAKNRRV 377


>gi|223040101|ref|ZP_03610381.1| OmpA/MotB [Campylobacter rectus RM3267]
 gi|222878578|gb|EEF13679.1| OmpA/MotB [Campylobacter rectus RM3267]
          Length = 256

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQKIGEVLAHSTE--VISIRGH 271
           V FE + +G +I +       +FDK S+ +   + ++ L++I  V+A      V ++ GH
Sbjct: 111 VTFEESESGFVIRLPANL---LFDKDSARLQNDDALLFLKRIAMVIAKLPPDVVANVIGH 167

Query: 272 TDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           TD+  P     +DNW+LS  RA S    L+K GV   +++
Sbjct: 168 TDSEQPGSAEFKDNWQLSSARAISVVTELIKDGVDPKKLT 207


>gi|168186129|ref|ZP_02620764.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund]
 gi|169295847|gb|EDS77980.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286
           I++ +   +FD   +     +  +L KI E++      + I GHTD  P  N   D NW 
Sbjct: 121 ILELKENILFDSGQADIKSSSKEILDKISELIKSVPNGVVIEGHTDNVPIHNSKYDSNWE 180

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           LS  RA +  +  + +   +    + +G+  +     +D     + NRR++IL+
Sbjct: 181 LSTQRAVNVLKYFVVNKGEKPEKLQAAGYGEYHPIAKNDTYADRAKNRRVNILI 234


>gi|310817592|ref|YP_003949950.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390664|gb|ADO68123.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD--N 284
           ID + T  FD   +     +  +L ++ ++L    E+  I++ GHTD     N+ +   N
Sbjct: 523 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTD-----NVGKPEAN 577

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILVEDR 341
            RLS  RA +    L + GV+  R+ +  G+   R  IA +  +   + NRR+D +   R
Sbjct: 578 LRLSQQRAEAVRDYLARKGVAPQRL-EAKGYGQER-PIAPNTTSKGRATNRRVDFITTTR 635

Query: 342 QG 343
           +G
Sbjct: 636 EG 637


>gi|19705338|ref|NP_602833.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19705349|ref|NP_602844.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713317|gb|AAL94132.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713330|gb|AAL94143.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 151

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L  I E +  +   I+I GHTD+     I  +  N
Sbjct: 30  VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G+SEDRI  I      +  IA++        NRR++  +  R
Sbjct: 83  FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141

Query: 342 Q 342
           +
Sbjct: 142 E 142


>gi|255305283|ref|ZP_05349455.1| chemotaxis protein [Clostridium difficile ATCC 43255]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           QDL  K++++       N+   V  +    GIL+ + D   + +FD   S    ++   L
Sbjct: 90  QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKADSKATL 139

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            K+ +++      I I GHTD  P ++   + NW LS  RA S  +  ++    + ++  
Sbjct: 140 NKVYDMIKMIKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPKLFS 199

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338
            +G   ++  ++++     + NRR++IL+
Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228


>gi|217978313|ref|YP_002362460.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
 gi|217503689|gb|ACK51098.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           VLFE+++     +++D       DK     L   ++ L+   E+      +I + GHTD 
Sbjct: 221 VLFESSQ-----AVLDTAGRAELDK-----LASALIELEH--EIPPDIPWIIRVDGHTDK 268

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSAN 331
            P ++     NW LS  RA +  Q L+  GVS  R++  +GF   +       D  N  N
Sbjct: 269 KPIQSSQYPSNWSLSAARAIAVVQYLVSKGVSPQRLAA-AGFGEFQPLDPGEGDDANRRN 327

Query: 332 RRIDILVEDR 341
           RRI++ + ++
Sbjct: 328 RRIELKITEK 337


>gi|167741105|ref|ZP_02413879.1| hypothetical protein Bpse14_23766 [Burkholderia pseudomallei 14]
          Length = 394

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 257 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 312

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 313 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 371

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 372 PIGDNRTPQGRALNRRVEITV 392


>gi|254302309|ref|ZP_04969667.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322501|gb|EDK87751.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R     FDKS+    PE   +L+ I E +  +   I+I GHTD+     I  +  N
Sbjct: 62  VLDERALNFDFDKSNV--KPEYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 114

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++LS  RA S    L++ G++EDRI  I      +  IA++        NRR++  +  R
Sbjct: 115 FKLSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 173

Query: 342 Q 342
           +
Sbjct: 174 E 174


>gi|224539344|ref|ZP_03679883.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519039|gb|EEF88144.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+++ ++L    T  I+I GHTD          N ++S DRAY+    L   GVS  +  
Sbjct: 128 LRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYTVENYLQDCGVSPSQFK 184

Query: 311 KISGFAHHRLKIASDPMN-SANRRIDILV 338
           K+ G  +++     D M+ S NRR+DI +
Sbjct: 185 KVEGVGYNQY---DDSMSASQNRRVDIYM 210


>gi|167818291|ref|ZP_02449971.1| hypothetical protein Bpse9_24346 [Burkholderia pseudomallei 91]
 gi|167913436|ref|ZP_02500527.1| hypothetical protein Bpse112_23310 [Burkholderia pseudomallei 112]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 256 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 311

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 312 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 370

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 371 PIGDNRTPQGRALNRRVEITV 391


>gi|115373816|ref|ZP_01461109.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369215|gb|EAU68157.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 669

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD--N 284
           ID + T  FD   +     +  +L ++ ++L    E+  I++ GHTD     N+ +   N
Sbjct: 552 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTD-----NVGKPEAN 606

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILVEDR 341
            RLS  RA +    L + GV+  R+ +  G+   R  IA +  +   + NRR+D +   R
Sbjct: 607 LRLSQQRAEAVRDYLARKGVAPQRL-EAKGYGQER-PIAPNTTSKGRATNRRVDFITTTR 664

Query: 342 QG 343
           +G
Sbjct: 665 EG 666


>gi|254189549|ref|ZP_04896059.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157937227|gb|EDO92897.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|311992352|gb|ADQ26749.1| MotB-1 [Aeromonas hydrophila]
          Length = 298

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LAK ++  +   + D  ++    E     I+I I   R    F   S+   P+   V++K
Sbjct: 141 LAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPVVRK 194

Query: 255 IGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312
           +  +L      I++ GHTD A+    + + NW LS  RA + A+Q++   G    R+  +
Sbjct: 195 VAALLKDVPGEITVSGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRLV-V 253

Query: 313 SGFAHHRLKIA-SDPMN-SANRRIDI 336
            G A  +  +  + P N   NRR++I
Sbjct: 254 QGMADSQPLVPNTSPENRRMNRRVEI 279


>gi|67642544|ref|ZP_00441299.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|121597981|ref|YP_990526.1| hypothetical protein BMASAVP1_0927 [Burkholderia mallei SAVP1]
 gi|124381968|ref|YP_001025016.1| hypothetical protein BMA10229_1214 [Burkholderia mallei NCTC 10229]
 gi|126447715|ref|YP_001079360.1| hypothetical protein BMA10247_A2189 [Burkholderia mallei NCTC
           10247]
 gi|166999157|ref|ZP_02265003.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254176494|ref|ZP_04883152.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|254203448|ref|ZP_04909809.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254205327|ref|ZP_04911680.1| OmpA family protein [Burkholderia mallei JHU]
 gi|254299607|ref|ZP_04967056.1| OmpA domain protein [Burkholderia pseudomallei 406e]
 gi|254356134|ref|ZP_04972411.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|121225779|gb|ABM49310.1| OmpA domain protein [Burkholderia mallei SAVP1]
 gi|126240569|gb|ABO03681.1| OmpA domain protein [Burkholderia mallei NCTC 10247]
 gi|147745687|gb|EDK52766.1| OmpA family protein [Burkholderia mallei FMH]
 gi|147754913|gb|EDK61977.1| OmpA family protein [Burkholderia mallei JHU]
 gi|148025117|gb|EDK83286.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|157809319|gb|EDO86489.1| OmpA domain protein [Burkholderia pseudomallei 406e]
 gi|160697536|gb|EDP87506.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|238523712|gb|EEP87149.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|243064713|gb|EES46899.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|261826580|gb|ABM99761.2| OmpA domain protein [Burkholderia mallei NCTC 10229]
          Length = 421

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|193215633|ref|YP_001996832.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089110|gb|ACF14385.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+I  + +I  ++ AH+    S+ GHTD+      A  N  LS  RA S 
Sbjct: 297 FDVGKATLRPESIGPINEIYSLMKAHADIKFSVEGHTDSD---GDASSNQTLSEQRAKSV 353

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDIL 337
              L++ G+S DR+ K  GF   +    +D P   A NRR++ +
Sbjct: 354 MDELIRMGISADRL-KFKGFGESKPVDTNDTPEGKANNRRVEFV 396


>gi|170724980|ref|YP_001759006.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810327|gb|ACA84911.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  S    PE+ ++L K+ + L  + EVI + GHTD S        N+ L L RA +A 
Sbjct: 126 FDFDSKSLTPESRLILDKVAKRLVQAPEVIKLVGHTDNSGSEEY---NYSLGLLRADNAQ 182

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDIL 337
             L K GV + ++   S        IAS+      + NRR+++L
Sbjct: 183 TYLNKQGVRDTQLKSES--QGETRPIASNENLDGRALNRRVELL 224


>gi|193212308|ref|YP_001998261.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
 gi|193085785|gb|ACF11061.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
          Length = 108

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  PE+   L+   E +A + ++ +   GH D    R  A  N  L   RA SA
Sbjct: 7   FDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDE---RGTAEYNMALGERRAESA 63

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRI 334
            + LM  GVS DR+S IS        I  D    S NRR+
Sbjct: 64  KESLMSLGVSGDRLSTISYGEEKPFAIGHDEAAWSQNRRV 103


>gi|53715977|ref|YP_106445.1| hypothetical protein BMAA1914 [Burkholderia mallei ATCC 23344]
 gi|52421947|gb|AAU45517.1| OmpA domain protein [Burkholderia mallei ATCC 23344]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 289 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 344

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 345 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 403

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 404 PIGDNRTPQGRALNRRVEITV 424


>gi|237509611|ref|ZP_04522326.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           pseudomallei MSHR346]
 gi|235001816|gb|EEP51240.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           pseudomallei MSHR346]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|328542518|ref|YP_004302627.1| OmpA family protein [polymorphum gilvum SL003B-26A1]
 gi|326412264|gb|ADZ69327.1| OmpA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321
           V+ + GHTD+ P     R  +NW LS  RA S  + L+  GV   R+   +GF   + L+
Sbjct: 264 VLRVDGHTDSRPLSGTGRLRNNWELSSARAISVVRYLIDRGVDPKRLVA-AGFGEFQPLE 322

Query: 322 IASDPMNSA-NRRIDILVEDR 341
               P   A NRRI++ + +R
Sbjct: 323 DGDSPEALARNRRIELKLTER 343


>gi|167908679|ref|ZP_02495884.1| hypothetical protein BpseN_41039 [Burkholderia pseudomallei NCTC
           13177]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 258 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 313

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 314 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 372

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 373 PIGDNRTPQGRALNRRVEITV 393


>gi|167826676|ref|ZP_02458147.1| hypothetical protein Bpseu9_23575 [Burkholderia pseudomallei 9]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 253 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 308

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 309 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 367

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 368 PIGDNRTPQGRALNRRVEITV 388


>gi|332702326|ref|ZP_08422414.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552475|gb|EGJ49519.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           K S++P      +L++I  VLA  T  +++ GH+D    R  +  N+ +S +RA    Q 
Sbjct: 141 KDSALP------ILERIAYVLAFMTAPVNVAGHSDMVGGR--SDGNYAISANRAMEVLQF 192

Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
           L + G+   R+S +S F   +  L+     + + NRR++ILV+
Sbjct: 193 LQEYGLDNRRLS-VSAFGPDQPLLEGNGPAVWNKNRRVEILVK 234


>gi|126665356|ref|ZP_01736338.1| flagellar motor protein MotB [Marinobacter sp. ELB17]
 gi|126629984|gb|EBA00600.1| flagellar motor protein MotB [Marinobacter sp. ELB17]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 11/96 (11%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSG-VS 305
           +L +I EVLA     ++I GHTD  P   I+ D    NW LS  RA S    L+ SG V 
Sbjct: 181 LLLEIAEVLASIPGELTIEGHTDNVP---ISTDRFYSNWDLSAARAASVANALLASGTVE 237

Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
            DR++ + G A    ++ +D     + NRR++I+++
Sbjct: 238 PDRLA-VKGLADTAARVDNDSAENRAKNRRVEIIID 272


>gi|163732302|ref|ZP_02139748.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149]
 gi|161394600|gb|EDQ18923.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149]
          Length = 659

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-L 320
           +I + GHTD  P   + +  DNW LS  RA S  + +++S G+  +R++  +GF   + +
Sbjct: 579 IIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVESLGIPPNRLAA-NGFGEFQPV 637

Query: 321 KIASDPMNSA-NRRIDILVEDR 341
            + + P   A NRRI++   +R
Sbjct: 638 AVENTPQARAQNRRIELKFTER 659


>gi|73540381|ref|YP_294901.1| OmpA [Ralstonia eutropha JMP134]
 gi|72117794|gb|AAZ60057.1| OmpA [Ralstonia eutropha JMP134]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+   P    VL ++ + L    +V++ + GHTD++     A+ N +LS  RA S 
Sbjct: 107 FDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHTDST---GNAQYNMQLSQRRAQSV 163

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
              L   GV+ +R+S    G        A++   + NRR++I ++  QG
Sbjct: 164 ATYLGDRGVARNRLSAEGRGQTQPVADNATEAGRTQNRRVEIFLKPIQG 212


>gi|307547058|ref|YP_003899537.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581]
 gi|307219082|emb|CBV44352.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     L  +  VL   T+  I+I GHTD++     A  N RLS  RA + 
Sbjct: 117 FGFDSSDLTPAATSALNDVSNVLTQYTDTRINIAGHTDST---GDAGYNQRLSERRAQAV 173

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
            Q L +SGVS  R++ + G+  ++  +AS+   +    NRR+++ +
Sbjct: 174 GQYLSQSGVSAGRLN-MQGYGENQ-PVASNDTEAGRAQNRRVEMTL 217


>gi|308188742|ref|YP_003932873.1| OOP family outer membrane lipoprotein yiaD precursor [Pantoea
           vagans C9-1]
 gi|308059252|gb|ADO11424.1| Putative OOP family outer membrane lipoprotein yiaD precursor
           [Pantoea vagans C9-1]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G  I +++  N   FD SSS   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRNGDNI-VLNMPNNVTFDSSSSNLKPAGANTLTGVSMVLKEYPKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
           +TD++  R +   N RLS  RA S    L+  GV+ DR+ ++ +G  +     +++   +
Sbjct: 151 YTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLRTQGAGPDNPVATNSTEAGKA 207

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|291483903|dbj|BAI84978.1| flagellar motor protein MotB [Bacillus subtilis subsp. natto
          BEST195]
          Length = 260

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89
          SW + YAD +T+L+A F+V++  ++ D    + + + FN     + T   G+ D  +  P
Sbjct: 16 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVLDYSSVTP 71

Query: 90 PERSS 94
          PE  S
Sbjct: 72 PENES 76


>gi|16078432|ref|NP_389251.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221309232|ref|ZP_03591079.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221313560|ref|ZP_03595365.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
          str. NCIB 3610]
 gi|221318482|ref|ZP_03599776.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
          str. JH642]
 gi|221322755|ref|ZP_03604049.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
          str. SMY]
 gi|321315123|ref|YP_004207410.1| flagellar motor protein MotB [Bacillus subtilis BSn5]
 gi|127250|sp|P28612|MOTB_BACSU RecName: Full=Motility protein B; AltName: Full=Chemotaxis
          protein MotB
 gi|143208|gb|AAA22603.1| motility protein B [Bacillus subtilis]
 gi|2633739|emb|CAB13241.1| motility protein B; MotB component of the stator flagellum
          complex [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021397|gb|ADV96383.1| flagellar motor protein MotB [Bacillus subtilis BSn5]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89
          SW + YAD +T+L+A F+V++  ++ D    + + + FN     + T   G+ D  +  P
Sbjct: 17 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVLDYSSVTP 72

Query: 90 PERSS 94
          PE  S
Sbjct: 73 PENES 77


>gi|13472147|ref|NP_103714.1| hypothetical protein mlr2348 [Mesorhizobium loti MAFF303099]
 gi|14022892|dbj|BAB49500.1| mlr2348 [Mesorhizobium loti MAFF303099]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 20/104 (19%)

Query: 251 VLQKIGEVLAHSTEVI---SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++Q I +V+  + E+I   +I GHTD    +  N    N RLS  RA +   +L+++GV 
Sbjct: 345 LIQSIAKVILANQELIGNITIVGHTDNVRLQRSNPLASNQRLSEARAQTIADLLVQAGVP 404

Query: 306 EDRISKISGFAHHRLKIASDPM--------NSANRRIDILVEDR 341
           ++RI       H   +  SDP+         + NRR+++LVE R
Sbjct: 405 QERI-------HSEGRADSDPVADNSTREGRALNRRVEVLVEKR 441


>gi|160899279|ref|YP_001564861.1| hypothetical protein Daci_3845 [Delftia acidovorans SPH-1]
 gi|160364863|gb|ABX36476.1| type IV / VI secretion system protein, DotU family [Delftia
           acidovorans SPH-1]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 18/122 (14%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284
           S +  R   +FD ++++  P  + V+ ++   L      + + G+TD  P R  AR   N
Sbjct: 308 STVILRGDGLFDPAATVVKPRYVQVIHRVAAALDEVPGKVVVNGYTDNLPIRT-ARFPSN 366

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSA-----NRRIDI 336
           W LS +RA +  Q+L  S     R+       H   +  SDP+   N+A     NRR++I
Sbjct: 367 WNLSQERAQAVSQMLGGSLRDRQRL-------HAEGRADSDPVAPNNTAEGRALNRRVEI 419

Query: 337 LV 338
           ++
Sbjct: 420 VL 421


>gi|154490982|ref|ZP_02030923.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC
           43184]
 gi|154088730|gb|EDN87774.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC
           43184]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+Q+L   +   L G  +D +            + +++ D+    +F+  S+       
Sbjct: 120 ERVQNLLNSVKDALLGFSSDELT----VREKDGKVYVAMSDK---LLFESGSARVDKRGK 172

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
             L K+ EVL   +++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 173 EALAKLAEVLNKQSDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226


>gi|297569175|ref|YP_003690519.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925090|gb|ADH85900.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSED 307
           +L ++GE+L  S   + + GHTD  P R  A    NW LS  R+ +  + L++   +  D
Sbjct: 139 LLDQLGEILVTSQATMVVEGHTDNVPMRPGAPFSSNWALSAARSVAVVEYLLEHYEIPRD 198

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R++    +A  R    +D     +ANRR++  +
Sbjct: 199 RLAA-EAYADSRPVAPNDTAEGRAANRRVEFRI 230


>gi|167848193|ref|ZP_02473701.1| hypothetical protein BpseB_23171 [Burkholderia pseudomallei B7210]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 245 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 300

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 301 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 359

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 360 PIGDNRTPQGRALNRRVEITV 380


>gi|330973477|gb|EGH73543.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 271

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323
           V+ I G+TD++  R    +N +LS DRA +   VLM  G+ E RI  + G+       A 
Sbjct: 189 VVRIEGYTDSTGDRQ---ENLKLSKDRAQAVADVLMDLGIDEKRI-HVEGYGQEFPVNAN 244

Query: 324 -SDPMNSANRRIDILVEDRQG 343
            S+   + NRR++I+  D +G
Sbjct: 245 TSERGRAQNRRVEIVFSDEKG 265


>gi|197122876|ref|YP_002134827.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196172725|gb|ACG73698.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 259

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE-----QYFNPFGKNLMTASKGIFDEQ 87
          W + YADFMT+L AFF+VM+ ++  D+  K+ ++     ++   F     T +  +FD  
Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN--KRVVQATESIRWAMHFSGTGGTGALPLFD-- 71

Query: 88 NPPERSSQNKID 99
           PP       ++
Sbjct: 72 GPPSEGGGPALE 83


>gi|326336238|ref|ZP_08202410.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691747|gb|EGD33714.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 26/238 (10%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N+  +K+ S  + K+  + +N +   +N     +  N +T  ++KG D     +LE+S+ 
Sbjct: 38  NTATVKLNSCLKDKELLQSKNELLQKNNEGLLTNLGN-MTTLTQKGAD-----NLERSLE 91

Query: 169 KEENYFLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
                      KEK L +K  +    R   +   +  +L G++ +   + +  +  +  +
Sbjct: 92  S---------LKEKDLTIKNLRDAVTRRDSINLALVQSLKGVLGNLDDQDITIQVDKGVV 142

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IAR 282
            +SI D+    +F   S    P    VL K+ +V+ +  +    + GHTD  P +N   +
Sbjct: 143 YVSISDKM---LFSSGSYNVTPRAREVLGKVAKVVNNKPDFEFMVEGHTDNVPIKNNCIK 199

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILV 338
           DNW LS+ RA +  ++L    GV+  R++      +  +   AS    + NRR  I+V
Sbjct: 200 DNWDLSVLRATAVVRILQNDFGVTPARMTAAGRSEYVPVTTNASADGRALNRRTRIVV 257


>gi|302873043|ref|YP_003841676.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307688801|ref|ZP_07631247.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302575900|gb|ADL49912.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 256

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281
           G++I++ D      FD   +    +    L  + ++L+     + + GHTD  P +    
Sbjct: 128 GLVITVKDNL---FFDSGKATVKEQYKRQLNALSKILSSIDNYVRVEGHTDNVPIKTPYF 184

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338
             NW+LS  RA +  ++   + G++ +R+  + G+  +R     A++   +ANRR+DI++
Sbjct: 185 NSNWQLSSIRASNVVEIFATECGLNPNRLLPV-GYGEYRPIATNATEEGRAANRRVDIVI 243


>gi|254519159|ref|ZP_05131215.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226912908|gb|EEH98109.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 25/168 (14%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT------GILISIIDQRNTP 235
           K L    +++LQ +  ++         ++IVK +  E + T      G++IS  D     
Sbjct: 78  KPLVQTEEEKLQGIESQV---------NDIVKDLELEGSVTTSIEERGLIISFTDN---V 125

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294
            FD + +    E    L  +  +L      + + GHTD  P        NW+LS  RA +
Sbjct: 126 FFDSAKADIKEELKPKLISVSNILNKIDNYVRVEGHTDNLPISTSDYHSNWQLSSVRASN 185

Query: 295 AYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
             + L+  G +S  R+S + G+  +R  +A   ++   + NRR+DIL+
Sbjct: 186 VVEFLISYGSISPSRLSAV-GYGEYR-PVADNTAEEGRAKNRRVDILI 231


>gi|187932715|ref|YP_001887659.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B]
 gi|187720868|gb|ACD22089.1| putative chemotaxis MotB protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 244

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 18/125 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G++IS  D      F+   +    E    L  I ++L      I + G+TD     N+A 
Sbjct: 115 GLIISFNDN---VFFNSGDATIKSEYKQKLISISKILNDIDNYIRVEGNTD-----NVAI 166

Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                  NW+LS  RA +  ++L+K G ++ D++S I G+  +R   ++D     +ANRR
Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNINSDKLSAI-GYGEYRPVKSNDTEEGRAANRR 225

Query: 334 IDILV 338
           +DI++
Sbjct: 226 VDIVI 230


>gi|77359764|ref|YP_339339.1| chemotaxis protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874675|emb|CAI85896.1| putative chemotaxis protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 319

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 33/219 (15%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           + N+++++Q L ++I Y+ +    +H        S++G  +     L   +  E+     
Sbjct: 41  AINKEEKFQVLSDSIGYVFDKSARQH--------SQQGTGVNGDAILTDRVTPEQEV--- 89

Query: 177 PLSKEKILAMKRKKRLQD------------LAKKISSTLSGL---VADNIVKG-VLFETT 220
            L  E IL  +   +L D            L K + S L+ L   + D I  G    E +
Sbjct: 90  -LYGESILKEEHGPKLLDGQSDTSNIEQKLLGKPLDSLLAKLQSSLIDEIRDGEASLELS 148

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN- 279
           +  +   II+  +  +F   SS+       V++ I +++A     I +RG+TD     N 
Sbjct: 149 QDWL---IIELSSGMLFSSGSSVAQVRAKQVVKIIKDIIAPVDNYIRVRGYTDNQTIGNE 205

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           + R NW LS+ RA +    L   G++  R++ I G+  +
Sbjct: 206 MYRSNWELSVARATAVLVELESLGINSARMA-IEGYGQY 243


>gi|322421651|ref|YP_004200874.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320128038|gb|ADW15598.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V    T+ G+++S+   +    FD  S+     +  +L  +   LA  +  + + GHTD 
Sbjct: 121 VSISVTQRGLVVSL---KEAGFFDSGSATLKQSSFSLLNDVVTSLASYSNSVRVEGHTDN 177

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED----RISKISGFAHHRLKI--ASDPM 327
            P  + +   NW LS  RA +  Q L K    ED    RIS  +G+  +R       +  
Sbjct: 178 IPISSASFPSNWELSTARATNVLQYLTK---QEDFDPARISA-AGYGEYRPVADNGDEEG 233

Query: 328 NSANRRIDILVEDRQ 342
              NRR+DI++   Q
Sbjct: 234 RGKNRRVDIVLLSEQ 248


>gi|302878266|ref|YP_003846830.1| OmpA/MotB domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581055|gb|ADL55066.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 281

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +N   W I YADF+T+L AFF+VM+ I++ ++   K      N
Sbjct: 11 DNHERWLISYADFVTLLFAFFVVMYSISSVNEGKYKTFSDSLN 53


>gi|254509011|ref|ZP_05121116.1| flagellar motor protein [Vibrio parahaemolyticus 16]
 gi|219548046|gb|EED25066.1| flagellar motor protein [Vibrio parahaemolyticus 16]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 23/118 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLD 290
           R    F + S+   P+   ++++I +++     ++ + GHTD     + + R NW LS  
Sbjct: 173 REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGIVRVSGHTDNQRIESELYRSNWDLSAQ 232

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336
           RA S  Q           + K+ GF   RL++     ++P+         S NRR++I
Sbjct: 233 RAVSVAQ----------EMEKVRGFTSQRLRVRGMADTEPLGPNDTEAQRSRNRRVEI 280


>gi|124010248|ref|ZP_01694902.1| chemotaxis protein MotB [Microscilla marina ATCC 23134]
 gi|123983684|gb|EAY24121.1| chemotaxis protein MotB [Microscilla marina ATCC 23134]
          Length = 286

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL  + ++ I I GHTD+ P      RDNW LS+ RA S  ++L+K
Sbjct: 181 ALGKLAEVLNKNQDIDIQIEGHTDSIPITTARFRDNWDLSVLRATSIVRILVK 233


>gi|308071044|ref|YP_003872649.1| flagellar motor protein [Paenibacillus polymyxa E681]
 gi|305860323|gb|ADM72111.1| Flagellar motor protein [Paenibacillus polymyxa E681]
          Length = 271

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLP 246
           ++K LQ+L   I       + DN ++  +F + +  GI+I++ D+    +FD+  +    
Sbjct: 114 QEKELQNLMGVIQE----YITDNKLENQIFVSDQPRGIVITLNDRF---LFDQGRAALKQ 166

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMK 301
            +   L K+  +       ISI GHTD  PF      +  +DNW LS  RA S  +  + 
Sbjct: 167 GSANTLSKLASLFRDLKTPISIEGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFLD 226

Query: 302 SGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
                    + +G+A  R     +++     NRR++I V
Sbjct: 227 REQLSPSGFQYAGYADTRPVGDNSTEAGRQKNRRVEITV 265



 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 11/68 (16%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGI----- 83
          W I YAD +T+L+ FF+VM+ +++ D    D   ++++  F+  G +++    GI     
Sbjct: 21 WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSLQDTFHK-GDSILEQGSGITGTAD 79

Query: 84 -FDEQNPP 90
           +  +NPP
Sbjct: 80 RYTSKNPP 87


>gi|226940371|ref|YP_002795445.1| Outer membrane protein A [Laribacter hongkongensis HLHK9]
 gi|226715298|gb|ACO74436.1| Outer membrane protein A [Laribacter hongkongensis HLHK9]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 207 VADNIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHST 263
           +A  I  G +F   R    IL+++  Q     FD +S+   P  +  +  I  ++  +  
Sbjct: 91  LATQIRDGQIFVVKRADNSILVTMTSQ---TAFDTNSASLKPGFMPTINTISRIVNQYGK 147

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322
             + I GHTD++    I   N  LS +RA +    L+   V   R+S    G +  R   
Sbjct: 148 TTLDITGHTDSTGNDRI---NVPLSQNRAAAVQNALLSRNVHPQRLSAYGMGASQPRASN 204

Query: 323 ASDPMNSANRRIDILVE 339
           AS+     NRR++IL+E
Sbjct: 205 ASEAGRQLNRRVEILIE 221


>gi|86141364|ref|ZP_01059910.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
 gi|85831923|gb|EAQ50378.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
          Length = 276

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           VL K+  V+ +  ++   + GHTD+ P   ++  DNW LS+ RA S  ++L +  GV  +
Sbjct: 167 VLGKVATVVKNKPDIEFMVEGHTDSQPISTSVIEDNWDLSVKRATSVVRILQEEFGVPPE 226

Query: 308 RISKISGFAHHRLKIASDPM---NSANRRIDILV 338
           R+  ++    + + +AS+      + NRR  I+V
Sbjct: 227 RM--VAAGRSYYVPLASNDTAEGRARNRRTRIVV 258


>gi|256370966|ref|YP_003108790.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007550|gb|ACU53117.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 258

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294
            F   S+   P    V+  I  VL      +SI G+TD+ P        N+ LS  RA +
Sbjct: 142 FFATDSAALGPVGDAVVDAIAGVLRTLPNDVSIEGYTDSEPIVGGPYSSNFELSAVRAVT 201

Query: 295 AYQVLMK-SGVSEDRISKISGFA-HHRLKIASDPMNSA-NRRIDILV 338
             + L K  G++ DR+S  +GF   H L   + P N A NRR+DI++
Sbjct: 202 VLERLWKVDGINPDRLSA-TGFGDTHPLVPNTTPQNMAMNRRVDIVI 247


>gi|254447506|ref|ZP_05060972.1| OmpA family protein [gamma proteobacterium HTCC5015]
 gi|198262849|gb|EDY87128.1| OmpA family protein [gamma proteobacterium HTCC5015]
          Length = 1980

 Score = 40.0 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFR----NIARDNWRLSLDRA-YSAYQVLMKSGVSED 307
           Q + +V     + I++ GH D  P R    +I  DN  LSL RA  +A     + G+  D
Sbjct: 491 QILSQVDKQRVQRITVIGHADTRPIRARSQSIYADNQALSLARANVAAEYARQRLGLEAD 550

Query: 308 RISKI-SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++  +  G +   LK  S   N+ANRR++I++E  Q
Sbjct: 551 KVDVLGKGDSFPLLKGRSGEDNAANRRVEIVIESLQ 586


>gi|254486344|ref|ZP_05099549.1| flagellar motor protein [Roseobacter sp. GAI101]
 gi|214043213|gb|EEB83851.1| flagellar motor protein [Roseobacter sp. GAI101]
          Length = 598

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
           VI + GHTD  P   +    DNW LS  RA S  + ++   G++ DR++  +GF  ++  
Sbjct: 518 VIRVDGHTDNQPLSGLGAFADNWELSQARALSVVKYMINFLGIAPDRLAA-NGFGQYQ-P 575

Query: 322 IA---SDPMNSANRRIDI 336
           +A   S+   + NRRI++
Sbjct: 576 VAEGDSESARAQNRRIEL 593


>gi|53721204|ref|YP_110189.1| hypothetical protein BPSS0168 [Burkholderia pseudomallei K96243]
 gi|76819105|ref|YP_336847.1| hypothetical protein BURPS1710b_A1690 [Burkholderia pseudomallei
           1710b]
 gi|126443128|ref|YP_001061334.1| hypothetical protein BURPS668_A0328 [Burkholderia pseudomallei 668]
 gi|134280864|ref|ZP_01767574.1| OmpA domain protein [Burkholderia pseudomallei 305]
 gi|217423202|ref|ZP_03454704.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|226198699|ref|ZP_03794263.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254263222|ref|ZP_04954087.1| OmpA domain protein [Burkholderia pseudomallei 1710a]
 gi|52211618|emb|CAH37613.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
 gi|76583578|gb|ABA53052.1| OmpA domain protein [Burkholderia pseudomallei 1710b]
 gi|126222619|gb|ABN86124.1| OmpA domain protein [Burkholderia pseudomallei 668]
 gi|134247886|gb|EBA47970.1| OmpA domain protein [Burkholderia pseudomallei 305]
 gi|217394110|gb|EEC34130.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|225929139|gb|EEH25162.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254214224|gb|EET03609.1| OmpA domain protein [Burkholderia pseudomallei 1710a]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|296329693|ref|ZP_06872178.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305674090|ref|YP_003865762.1| motility protein B; MotB component of the stator flagellum
          complex [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153191|gb|EFG94055.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305412334|gb|ADM37453.1| motility protein B; MotB component of the stator flagellum
          complex [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89
          SW + YAD +T+L+A F+V++  ++ D    + + + FN     + T   G+ D  +  P
Sbjct: 17 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVMDYSSVTP 72

Query: 90 PERSS 94
          PE  S
Sbjct: 73 PENES 77


>gi|330808241|ref|YP_004352703.1| flagellar motor protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gi|327376349|gb|AEA67699.1| flagellar motor protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 294

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K I +
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISE 50



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N +      T R   L   I+  ++ +F    ++P      +
Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDMAFNI 153

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +L      I + G TD  P R      NW LS  R+ S  ++L   GV+  R++
Sbjct: 154 IDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLA 213

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
            + G+   +     A+    + NRR+ ++V
Sbjct: 214 SV-GYGEFQPVANNATAEGRARNRRVVLVV 242


>gi|167896753|ref|ZP_02484155.1| hypothetical protein Bpse7_23620 [Burkholderia pseudomallei 7894]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           L+ L+A  I  G L       R+ ++      R   MF   ++   P    +++KI   +
Sbjct: 252 LATLLAGEIAAGTLSVEENARRSSVMF-----RGDAMFAPGAAGVNPAMGPLIRKIAAEI 306

Query: 260 AHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           A     +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +     
Sbjct: 307 ARVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGA 365

Query: 318 HRLKIASDPMNSA-NRRIDILV 338
             +     P   A NRR++I V
Sbjct: 366 EPIGDNRTPQGRALNRRVEITV 387


>gi|124009612|ref|ZP_01694285.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC
           23134]
 gi|123984753|gb|EAY24733.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC
           23134]
          Length = 493

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 227 SIIDQRNTP---------MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASP 276
            + D R  P         +F    +I  P +  VL ++ E+L  +++  I + GHTD   
Sbjct: 371 GVKDNRGCPEVLERASKVLFAPGKAIINPVSFPVLNELSELLKKYASTKIYLEGHTD--- 427

Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---N 331
             N   D  N +LS DRA +    L+K G+++ RI   +GF   +  IA +   +    N
Sbjct: 428 --NQGDDDANLKLSKDRAQAVADYLIKKGIAKSRIES-TGFGETK-PIADNKTAAGRKKN 483

Query: 332 RRIDI 336
           RR+D+
Sbjct: 484 RRVDM 488


>gi|91216090|ref|ZP_01253058.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
 gi|91185607|gb|EAS71982.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNW 285
           +   N  +F   S     E    ++++G+VLA + ++ + I GHTD  P+       DNW
Sbjct: 192 VSMENKLLFASGSWTVGGEGQKAVKELGKVLADNPDIAVLIEGHTDNVPYGGNGPLTDNW 251

Query: 286 RLSLDRAYSAYQVLMKSG 303
            LS  RA    ++L+K+G
Sbjct: 252 DLSTKRATEVLKLLLKNG 269


>gi|254447387|ref|ZP_05060853.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
 gi|198262730|gb|EDY87009.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 193 QDLA--KKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           QDL   K+    L   +AD +  G + F+  R GI  +++ + N+       +       
Sbjct: 45  QDLEAEKQRRQALERALADPLASGRITFQDGRIGISGNLLFRINSADLQSGGN------- 97

Query: 250 VVLQKIGE----VLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303
            VLQ + E     L+   E++ + G TD       N+ RDNW LS  RA +  + L++ G
Sbjct: 98  QVLQDLAEPLKVYLSQHDELLMVSGFTDDLSLHEDNLYRDNWGLSAQRALTVTRTLVEQG 157

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
           + +DR+   +  A+       D  + A NRR++I
Sbjct: 158 LPQDRLFAAAFGANAPTVPNRDAASRAKNRRVEI 191


>gi|54309669|ref|YP_130689.1| outer membrane protein [Photobacterium profundum SS9]
 gi|46914107|emb|CAG20887.1| conserved hypothetical outer membrane protein [Photobacterium
           profundum SS9]
          Length = 220

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           PE+  VL+ I   L +S + +S+ GHTD+   +     N+ L L RA S+ Q L+ + V 
Sbjct: 130 PESQTVLKAIARKLTNSQQTVSLAGHTDSVGSQGY---NYTLGLQRAKSSMQYLIDNEVK 186

Query: 306 EDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  + SK  G         +    + NRR+D+++
Sbjct: 187 DTNLKSKTYGETQPIESNTTSQGRAMNRRVDVVM 220


>gi|42521782|ref|NP_967162.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100]
 gi|39574312|emb|CAE77816.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          W + YADF+T+L AFF+VM+  + ++++ +K  E
Sbjct: 17 WLVSYADFITLLFAFFVVMYATSTSNEEKQKEFE 50



 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294
            F + S+   PE +  L K+ +VL    + I I GHTD  P    +   NW L+  RA +
Sbjct: 135 FFQEGSAKLKPEALKSLDKVADVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASA 194

Query: 295 AYQVLMKSGVSEDR--ISKISGFAHHRLKIASDPMNSANRRIDILV 338
             + L+K    + +  +S   G     +   SD   + NRRI+I +
Sbjct: 195 VVRYLVKVHQMDPKRFVSLSYGDQKPVVPNDSDEHRAMNRRIEIFI 240


>gi|126457554|ref|YP_001074280.1| hypothetical protein BURPS1106A_A0237 [Burkholderia pseudomallei
           1106a]
 gi|242313025|ref|ZP_04812042.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254195472|ref|ZP_04901900.1| OmpA domain protein [Burkholderia pseudomallei S13]
 gi|126231322|gb|ABN94735.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|169652219|gb|EDS84912.1| OmpA domain protein [Burkholderia pseudomallei S13]
 gi|242136264|gb|EES22667.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|162146328|ref|YP_001600787.1| hypothetical protein GDI_0503 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161784903|emb|CAP54446.1| putative outer membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323
           ++ + GH D  P  +    NW LS  RA +  ++L+  G+S   ++  +GFA  + L   
Sbjct: 249 ILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHHLAA-TGFADFQPLDTH 307

Query: 324 SDPMNSA-NRRIDILVEDR 341
             P   A NRRI+  + DR
Sbjct: 308 ETPAAFARNRRIEFRLTDR 326


>gi|38327415|gb|AAR17735.1| motility protein B [Bdellovibrio bacteriovorus]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          W + YADF+T+L AFF+VM+  + ++++ +K  E
Sbjct: 17 WLVSYADFITLLFAFFVVMYATSTSNEEKQKEFE 50


>gi|228471996|ref|ZP_04056764.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276608|gb|EEK15321.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 278

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 25/209 (11%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N+  +K+ S  + K+  + +N +   +N     +  N +T  ++KG D     +LE+S+ 
Sbjct: 38  NTATIKLNSCLKDKELLQSKNEMLAKNNEGLMTNLGN-MTILTQKGAD-----NLERSLE 91

Query: 169 KEENYFLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
                      KEK L +K  +    R   +   +  +L G++ +   + +  +  +  +
Sbjct: 92  S---------LKEKDLTIKNLRDAVTRRDSINLALVQSLKGVLGNLDDEDITVQVDKGVV 142

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-R 282
            +SI D+    +F   S    P    VL K+ +V+ +  +    + GHTD  P +N   +
Sbjct: 143 YVSISDKM---LFSSGSYNVTPRAREVLGKVAKVVNNKPDFEFMVEGHTDNVPIKNTCIK 199

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           DNW LS+ RA +  ++L    GV+  R++
Sbjct: 200 DNWDLSVLRATAVVRILQNDFGVTASRMT 228


>gi|209543669|ref|YP_002275898.1| hypothetical protein Gdia_1504 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531346|gb|ACI51283.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323
           ++ + GH D  P  +    NW LS  RA +  ++L+  G+S   ++  +GFA  + L   
Sbjct: 249 ILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHHLAA-TGFADFQPLDTH 307

Query: 324 SDPMNSA-NRRIDILVEDR 341
             P   A NRRI+  + DR
Sbjct: 308 ETPAAFARNRRIEFRLTDR 326


>gi|86157810|ref|YP_464595.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85774321|gb|ABC81158.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 259

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59
          W + YADFMT+L AFF+VM+ ++  D+
Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN 42



 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V  VL E  R  + ++      T  FD   +   P+ + +L  I   L      + + GH
Sbjct: 118 VVSVLVEGRRLTVRLA-----ATEFFDPGQAALRPQALAMLDAIAAELVPLARPLRVEGH 172

Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDP-M 327
           TD +P     R   NW LS  RA +    L ++  +    +S +   + H L   + P  
Sbjct: 173 TDETPVGGGGRWISNWELSAARAATVVGYLEQAHAARPAGLSAVGLGSAHPLSTDATPEA 232

Query: 328 NSANRRIDILVE 339
           +  NRR+++++E
Sbjct: 233 HERNRRVELVLE 244


>gi|170693360|ref|ZP_02884520.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170141890|gb|EDT10058.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 230

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LPE+  VL +I  VL   +   I + GHTD+ P      + NW LS  RA 
Sbjct: 123 LFNSGDARLLPESFAVLDRIAAVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAG 182

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR-IDILVE 339
           +  +     G+   R++ I    +  L I +D   +A  R + ILVE
Sbjct: 183 AVVRFFADKGIEAHRMAAIGRADNFPLIIGNDAAANAANRRVTILVE 229


>gi|220917668|ref|YP_002492972.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955522|gb|ACL65906.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 259

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59
          W + YADFMT+L AFF+VM+ ++  D+
Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN 42



 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V  VL E  R  + ++      T  FD   +   P+ + +L  I   +      + + GH
Sbjct: 118 VVSVLVEGRRLTVRLA-----ATEFFDPGQAALRPQALALLDAIAVEIVPLERPLRVEGH 172

Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDP-M 327
           TD +P  +  R   NW LS  RA +    L ++  +   +    G    H L   + P  
Sbjct: 173 TDETPVGSGGRWMSNWELSATRAATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEA 232

Query: 328 NSANRRIDILVE 339
           +  NRR+++++E
Sbjct: 233 HERNRRVELVLE 244


>gi|158314079|ref|YP_001506587.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec]
 gi|158109484|gb|ABW11681.1| OmpA/MotB domain protein [Frankia sp. EAN1pec]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L K+   L      + + GHTD++  R +   N  LS+DRA  A + L+  GV  +RI +
Sbjct: 320 LDKVARALLPGDLTVIVGGHTDSTGPRAL---NQALSIDRARVAREYLVMRGVPAERI-R 375

Query: 312 ISGFAHHRLKI--ASDPMNSANRRIDI 336
            +GF   +     AS    +ANRR+D+
Sbjct: 376 AAGFGPDQPIADNASTSGRAANRRVDV 402


>gi|149913687|ref|ZP_01902220.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b]
 gi|149812807|gb|EDM72636.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b]
          Length = 599

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 18/83 (21%)

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           V+ + GHTD  P R  A   DNW LS+ RA S  + ++ + G+  +R+S  +GF  ++  
Sbjct: 519 VLQVDGHTDDVPVRPGAAFEDNWELSMARALSVVRYMIDTLGLPPERLSA-NGFGQYQ-- 575

Query: 322 IASDPMN--------SANRRIDI 336
               P+N        + NRRI++
Sbjct: 576 ----PVNPDDTPEARAQNRRIEL 594


>gi|225181601|ref|ZP_03735042.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167709|gb|EEG76519.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G+++ I D+    +FD   +   PE   +L K+  +LA+    I + GHTD  P +    
Sbjct: 98  GVVLEIQDRL---LFDTGRAEIRPEARELLVKVAGILANVPNQIIVEGHTDNVPIQTAQY 154

Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDIL 337
             NW LS+DRA    + L  +  +  +R    +G+   +  +AS+      + NRR++I+
Sbjct: 155 PSNWELSVDRAVRVVRYLSERQDIDPERFLA-TGYGEFQ-PVASNETVQGRAKNRRVNIV 212

Query: 338 VED 340
           + +
Sbjct: 213 ISE 215


>gi|167921374|ref|ZP_02508465.1| hypothetical protein BpseBC_22683 [Burkholderia pseudomallei
           BCC215]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 259 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 314

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 315 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGVE 373

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 374 PIGDNRTPQGRALNRRVEITV 394


>gi|194366042|ref|YP_002028652.1| hypothetical protein Smal_2266 [Stenotrophomonas maltophilia
           R551-3]
 gi|194348846|gb|ACF51969.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)

Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRLQ L + ++  L+ G V   +V G      R GI  S++   N+           PE 
Sbjct: 60  KRLQTLEQALAGPLAAGRV--TLVDG------RIGISGSVLFALNSDQLQ-------PEG 104

Query: 249 IVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301
             +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L+ 
Sbjct: 105 QELLRSLAAPLAAYLGTREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
            GV  D +   +  +   +   +D    A NRR++I
Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNADEAGRARNRRVEI 200


>gi|330876044|gb|EGH10193.1| flagellar motor protein MotD [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|315186462|gb|EFU20222.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +K+   +   + D  +     ET+  G+ I +        F   S++ LPE    L+KI 
Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSAVLLPEEQEKLRKIA 310

Query: 257 EVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           ++L+   E  + + GHT    +P   +A     LS++RA +    LMK GV       I 
Sbjct: 311 QILSRYPERDLLVEGHTALAGTPEGRLA-----LSIERAKAVADFLMKLGVRRPEQIVIQ 365

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILV 338
           G+   R     A++   S NRR++I +
Sbjct: 366 GYGATRPIADNATEAGRSRNRRVEITI 392


>gi|331016979|gb|EGH97035.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans
          str. M302278PT]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|289627957|ref|ZP_06460911.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|289647094|ref|ZP_06478437.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|298487807|ref|ZP_07005848.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298157899|gb|EFH98978.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|330866472|gb|EGH01181.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|302185388|ref|ZP_07262061.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
          642]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|213967534|ref|ZP_03395682.1| motB protein [Pseudomonas syringae pv. tomato T1]
 gi|301382871|ref|ZP_07231289.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062803|ref|ZP_07254344.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato
          K40]
 gi|302131302|ref|ZP_07257292.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213927835|gb|EEB61382.1| motB protein [Pseudomonas syringae pv. tomato T1]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|71737581|ref|YP_275515.1| flagellar motor protein MotD [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71558134|gb|AAZ37345.1| chemotaxis protein MotB [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|283133060|dbj|BAI63827.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci]
 gi|320325140|gb|EFW81209.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320329399|gb|EFW85392.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330889033|gb|EGH21694.1| flagellar motor protein MotD [Pseudomonas syringae pv. mori str.
          301020]
 gi|330986516|gb|EGH84619.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans
          str. M301315]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|83941363|ref|ZP_00953825.1| flagellar motor protein [Sulfitobacter sp. EE-36]
 gi|83847183|gb|EAP85058.1| flagellar motor protein [Sulfitobacter sp. EE-36]
          Length = 582

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-- 319
           VI + GHTD  P   +    DNW LS  RA S  + ++   G++ +R++  +GF  ++  
Sbjct: 502 VIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQPV 560

Query: 320 LKIASDPMNSANRRIDILVEDR 341
            +  ++   + NRRI++ + +R
Sbjct: 561 ARGNTEAARAQNRRIELKLTER 582


>gi|269119353|ref|YP_003307530.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613231|gb|ACZ07599.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 178

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S   PE    L+   EV+ +S+  ++I G+TD+   +  A  N +LSL RA +  
Sbjct: 70  FDFDDSRVKPEYYGELRAAAEVIKNSSMRVNITGYTDS---KGSAEYNEKLSLRRAEAVK 126

Query: 297 QVLMKSGVSEDRISKISGFAH 317
             LM+ G++E+ I+ + G   
Sbjct: 127 AKLMEFGLNENYIAGVRGLGE 147


>gi|218885922|ref|YP_002435243.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756876|gb|ACL07775.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 244

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 266 ISIRGHTDAS-PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322
           I+IRG TD S P +N   RDNW LS  RA S  +  +K+G+   R++    G        
Sbjct: 163 INIRGFTDDSQPGQNSRFRDNWELSSLRAVSVLRYFLKAGIDSKRLTATGLGELDPLFPN 222

Query: 323 ASDPMNSANRRIDILVEDR 341
            ++   + NRR++ ++E R
Sbjct: 223 TTEENRARNRRVEFMLERR 241


>gi|28869189|ref|NP_791808.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852429|gb|AAO55503.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|330964668|gb|EGH64928.1| flagellar motor protein MotD [Pseudomonas syringae pv. actinidiae
          str. M302091]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|209964330|ref|YP_002297245.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|209957796|gb|ACI98432.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL ++  +LA     I++ GHTD           NW LS  RA +  + L+ +GV   R+
Sbjct: 210 VLDRLVPMLARMPGTITVEGHTDPVAIATTRFPSNWELSAARAAAVVRHLVAAGVPAQRL 269

Query: 310 SKISGFAHHRLKIASDPMNSA-NRRIDILVE 339
            + +G A  R  + +DP   A NRR++I+++
Sbjct: 270 -RATGLADSR-PLTTDPARWAMNRRVEIVID 298


>gi|331011090|gb|EGH91146.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|330953776|gb|EGH54036.1| flagellar motor protein MotD [Pseudomonas syringae Cit 7]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|330899454|gb|EGH30873.1| flagellar motor protein MotD [Pseudomonas syringae pv. japonica
          str. M301072PT]
 gi|330940674|gb|EGH43692.1| flagellar motor protein MotD [Pseudomonas syringae pv. pisi str.
          1704B]
 gi|330976021|gb|EGH76087.1| flagellar motor protein MotD [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|257484887|ref|ZP_05638928.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|66046660|ref|YP_236501.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
          B728a]
 gi|63257367|gb|AAY38463.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330972462|gb|EGH72528.1| flagellar motor protein MotD [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|197120112|ref|YP_002140539.1| chemotaxis protein MotB [Geobacter bemidjiensis Bem]
 gi|197089472|gb|ACH40743.1| chemotaxis MotB protein [Geobacter bemidjiensis Bem]
          Length = 254

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V    T  G+++S+   +    FD  S+    ++  +L+ +   L+  +  I + GHTD 
Sbjct: 121 VSVSVTPRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVVSSLSSYSNGIRVEGHTDN 177

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-LKIASDPMNSA- 330
            P  + +   NW LS  RA +  Q L K +     RIS  +G+  +R +   SD      
Sbjct: 178 MPISSASFPSNWELSTARATNVLQYLTKQTDFDPYRIS-AAGYGEYRPVADNSDAEGRGK 236

Query: 331 NRRIDILVEDRQ 342
           NRR+DI++   Q
Sbjct: 237 NRRVDIVLLSEQ 248


>gi|254182815|ref|ZP_04889408.1| OmpA domain protein [Burkholderia pseudomallei 1655]
 gi|184213349|gb|EDU10392.1| OmpA domain protein [Burkholderia pseudomallei 1655]
          Length = 421

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L+ L+A  I  G L   E  R     S +  R   MF   ++   P    +++KI   +A
Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339

Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                +++RG+TD  P   R  A  N  LS +RA    Q+L  +GV   R+  +      
Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAA 398

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            +     P   A NRR++I V
Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419


>gi|256827978|ref|YP_003156706.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577154|gb|ACU88290.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S + LP     +++I +VL  +    I + GHTD++        N  LS  RA+S 
Sbjct: 114 FAVDSDVVLPGLYTEIERIAQVLVKYPQTTIVVEGHTDSTGSDTY---NQALSERRAWSV 170

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            ++L++ GV+  RI+ + G+   R    +D       NRR++I V
Sbjct: 171 QRLLVERGVNPSRITAM-GYGESRPVATNDTPEGRQMNRRVEIRV 214


>gi|152983975|ref|YP_001346830.1| outer membrane protein [Pseudomonas aeruginosa PA7]
 gi|150959133|gb|ABR81158.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
          Length = 261

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234
           L+K+ I+    + +LQ+  A++  + L    A  D +   +  + T  G +++  D    
Sbjct: 88  LAKQTIVLRNAESQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S   P  +  +Q++ E L  + E  + + G+TD++   N    N RLS  RA 
Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           S    L+  G+S +R++   G+      +AS+  +S    NRR+++ +
Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTI 246


>gi|90415361|ref|ZP_01223295.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
 gi|90332684|gb|EAS47854.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
          Length = 399

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPE 247
           +R QD+  K       L AD  +   L E  R G  I++ +  Q +   F   SS   P 
Sbjct: 247 QRRQDIDDKYQQIRLSLAAD--INNGLAEVERDGDKIIVRLASQGS---FVSGSSNLQPG 301

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L ++G  L+ ++  + + GHTD  P  F      NW LS  R+ S       +   
Sbjct: 302 FTGLLTRVGNSLSVTSGKVRVEGHTDNIPVAFSERFNSNWDLSAARSASVADFFADNSEL 361

Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVE 339
           +     ++GFA  R     D  N+A     NRRI+++V+
Sbjct: 362 DQSAITVAGFADTR---PIDSNNTAAGRARNRRIEVIVD 397


>gi|255322336|ref|ZP_05363482.1| OmpA/MotB [Campylobacter showae RM3277]
 gi|255300709|gb|EET79980.1| OmpA/MotB [Campylobacter showae RM3277]
          Length = 256

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHT 272
           V FE + +G +I +    N      S+ +   + ++ L++I  V+A      V ++ GHT
Sbjct: 111 VTFEESESGFVIRL--PANLLFAKDSAKLQNDDALLFLKRIAMVIAKLPPDVVANVIGHT 168

Query: 273 DAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           D+  P     +DNW+LS  RA S    L+K GV   +++
Sbjct: 169 DSEQPASTEFKDNWQLSSARAISVVSELIKDGVDPKKLT 207


>gi|228910334|ref|ZP_04074150.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|229032155|ref|ZP_04188131.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228729161|gb|EEL80161.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228849286|gb|EEM94124.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
          Length = 123

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGF 315
           +++ S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+
Sbjct: 32  LVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GY 90

Query: 316 AHHRLKIASDPMN--SANRRIDILV 338
             +R    +D     + NRR+++ +
Sbjct: 91  GEYRSIAPNDTQEGKAKNRRVEVFI 115


>gi|82701882|ref|YP_411448.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
 gi|82409947|gb|ABB74056.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 225

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I GHTD+S    +   N  LSL+RA S    L   GVS +R+ +I G       +A+D
Sbjct: 145 VTIIGHTDSSGSDAV---NNPLSLNRAASTRDYLASRGVSPNRV-RIEGRGSREPIVAND 200

Query: 326 -PMNSA-NRRIDILVED 340
            P N A NRR++I V +
Sbjct: 201 TPQNRARNRRVEIYVAE 217


>gi|262384794|ref|ZP_06077926.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293510|gb|EEY81446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226


>gi|157889026|dbj|BAF80970.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKS 302
           PE    +Q++G+VL  + +  +I  GHTD     NI     N +LSL+RA    + L K+
Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTD-----NIGPKAYNQKLSLERAKVVAKELEKT 287

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           GV++++I+   G+   + K ++D     + NRR++
Sbjct: 288 GVTKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|300775912|ref|ZP_07085772.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
 gi|300505462|gb|EFK36600.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMK 301
           LP    VL K+ +V+  +    + I G+TD +P    N+ RDNW LS  R  S  +VL  
Sbjct: 162 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNAPLNSPNLPRDNWDLSALRGTSVAKVLQT 221

Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             GV   RI+   G + +  K  +  ++  + NRR +I++
Sbjct: 222 QFGVDPARITA-GGRSEYNPKATNMSVSGRAENRRTEIII 260


>gi|298377743|ref|ZP_06987694.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19]
 gi|298265446|gb|EFI07108.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19]
          Length = 280

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 177 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 229


>gi|288940353|ref|YP_003442593.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288895725|gb|ADC61561.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 608

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 241 SSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           +++P  E +  L++I E+L AH      I GHTD+     +   N  LSL RA +  Q L
Sbjct: 509 ATLPTGE-LASLERIAELLKAHPELTARIEGHTDSLGSAAL---NQSLSLQRAEAVRQAL 564

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341
           ++ GV   R+S   G    R  IA +        NRR+++ + DR
Sbjct: 565 VERGVDGGRLS-AEGLGPTR-PIADNATAEGRGKNRRVEVYILDR 607


>gi|254511081|ref|ZP_05123148.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11]
 gi|221534792|gb|EEE37780.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11]
          Length = 559

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 26/125 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTE-------VISIRGHTDASPFRNIAR--DNW 285
           +FD  S++   E    + K+  +L A + E       VI + GHTD  P     R  DNW
Sbjct: 442 LFDTGSAVLSLEGREEVAKVANILRAVAAEIPEGLNWVIRVDGHTDNVPLAGSGRYRDNW 501

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
            LS  RA S  + ++ + G+  +R++  +GF   +      P+N A        NRRI++
Sbjct: 502 ELSQGRALSVVRYMVDALGIPPNRLAA-NGFGEFQ------PVNPADTPDARAQNRRIEL 554

Query: 337 LVEDR 341
            + +R
Sbjct: 555 KLTER 559


>gi|305665914|ref|YP_003862201.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170]
 gi|88710689|gb|EAR02921.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170]
          Length = 446

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 22/170 (12%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           EN   P   K+    + +  +  D+A        G VA+N    V  E  +      + D
Sbjct: 291 ENKGCPWTDKDGDSVLDKDDQCPDVA--------GTVANNGCPEVTEEVQK-----QLND 337

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289
              T +FD   S    E+  V+  I ++L+ + T   ++ GHTD+      A+ N  LS 
Sbjct: 338 YARTILFDTGKSSIKAESTSVMVDIIQILSEYPTAKFTVEGHTDS---VGSAKLNQTLSE 394

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
            RA S    L+  G+   R+S I G+   +  IA++   S    NRR++I
Sbjct: 395 SRANSVRDFLIDKGIGSSRLSAI-GYGEDK-PIATNNTRSGRKQNRRVEI 442


>gi|15598888|ref|NP_252382.1| Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1]
 gi|107103206|ref|ZP_01367124.1| hypothetical protein PaerPA_01004275 [Pseudomonas aeruginosa PACS2]
 gi|116051689|ref|YP_789472.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890031|ref|YP_002438895.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254236602|ref|ZP_04929925.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719]
 gi|254242387|ref|ZP_04935709.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192]
 gi|296387801|ref|ZP_06877276.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           PAb1]
 gi|313109098|ref|ZP_07795070.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|9949856|gb|AAG07080.1|AE004788_10 Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1]
 gi|115586910|gb|ABJ12925.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168533|gb|EAZ54044.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719]
 gi|126195765|gb|EAZ59828.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192]
 gi|218770254|emb|CAW26019.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|310881572|gb|EFQ40166.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 261

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234
           L+K+ I+    + +LQ+  A++  + L    A  D +   +  + T  G +++  D    
Sbjct: 88  LAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S   P  +  +Q++ E L  + E  + + G+TD++   N    N RLS  RA 
Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           S    L+  G+S +R++   G+      +AS+  +S    NRR+++ +
Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTI 246


>gi|331006366|ref|ZP_08329676.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330419826|gb|EGG94182.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWR 286
           I   N  +FD  +  P  +   V+ +I  ++  +   I + G TD     N A+   NW+
Sbjct: 110 ISLSNRILFDIGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAI-NTAQFPSNWQ 168

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
           LS  RA +  Q+L  SGVS  ++S + G+   +  IA   S+   + NRR+ +++
Sbjct: 169 LSAARASAIVQLLSASGVSPSQLSAV-GYGEFQ-PIADNSSEAGRAKNRRVVLMI 221



 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
          W + YADF+T+L AFF+VM+ ++  ++   + +    N F
Sbjct: 16 WLVSYADFVTLLFAFFVVMYSVSQINESKYEELTSTLNGF 55


>gi|70729063|ref|YP_258799.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf-5]
 gi|68343362|gb|AAY90968.1| motB protein [Pseudomonas fluorescens Pf-5]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K I +
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISE 50



 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N +      T R   L   I+  ++ +F    ++P  +   +
Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDQAFTI 153

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+ ++L      I + G TD  P +      NW LS  R+ S  ++L   GV+  R++
Sbjct: 154 IDKVAKILKPFDNPIHVEGFTDNLPIQTAQYPTNWELSSARSASIVRMLAMQGVNPARMA 213

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
            + G+   +     A+    + NRR+ ++V
Sbjct: 214 SV-GYGEFQPVANNATAEGRARNRRVVLVV 242


>gi|150006781|ref|YP_001301524.1| putative flagellar motor protein MotB [Parabacteroides distasonis
           ATCC 8503]
 gi|149935205|gb|ABR41902.1| putative flagellar motor protein MotB [Parabacteroides distasonis
           ATCC 8503]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226


>gi|49083000|gb|AAT50900.1| PA3692 [synthetic construct]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234
           L+K+ I+    + +LQ+  A++  + L    A  D +   +  + T  G +++  D    
Sbjct: 88  LAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S   P  +  +Q++ E L  + E  + + G+TD++   N    N RLS  RA 
Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVED 340
           S    L+  G+S +R++   G+      +AS+  +S    NRR+++ + +
Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTISN 248


>gi|332668363|ref|YP_004451151.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332337177|gb|AEE54278.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 312

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAY 293
           +F   S+    +   VL KI ++L    ++ + + G+TD  P +     DNW LS+ RA 
Sbjct: 188 LFQSGSATMTTKANEVLGKIAQILKSRPDLEVMVEGYTDNKPIKTACIEDNWDLSVKRAT 247

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILV 338
           +  + L K+ GV  +R+       ++ L    ++   S NRR  I++
Sbjct: 248 AVARTLQKTHGVDPNRLIAAGRGEYNALATNDTEEGRSTNRRTRIII 294


>gi|301309047|ref|ZP_07214992.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3]
 gi|300833073|gb|EFK63698.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226


>gi|253702421|ref|YP_003023610.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251777271|gb|ACT19852.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 253

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V    T+ G+++S+   +    FD  S+    ++  +L+ +   L+  +  + + GHTD 
Sbjct: 120 VSVSVTQRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVVSSLSSYSNGLRVEGHTDN 176

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330
            P  + +   NW LS  RA +  Q L K   S+    KIS   +   +  +D   +    
Sbjct: 177 MPISSASFPSNWELSTARATNVLQYLTKQ--SDFDPYKISAAGYGEYRPVADNSEAEGRG 234

Query: 331 -NRRIDILVEDRQ 342
            NRR+DI++   Q
Sbjct: 235 KNRRVDIVLLSEQ 247


>gi|295136349|ref|YP_003587025.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294984364|gb|ADF54829.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 180 KEKILAMKRKKRLQDLAKKISS------TLSGLVA------------------DNIVKGV 215
           KEK LA + + RL+ L K +++       L GL+A                  D   KG+
Sbjct: 118 KEKTLAAE-QARLEKLQKDLAARSQRIDELEGLIAAKDAKMNALKDAISKALTDFEGKGL 176

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             E     + +S+    N  +F+  S     +    + ++G VLA + ++ + I GHTD 
Sbjct: 177 TVEQRDGKVYVSM---ENKLLFNSGSWAVNADGRQAVNQLGSVLAQNPDISVLIEGHTDN 233

Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
            P+      +DNW LS  RA +  Q+L ++   + +    +G   +     +D     + 
Sbjct: 234 VPYGGNGPLKDNWDLSTKRATAIVQILRENSNIDPQNLTAAGRGEYAPVATNDTAEGKAK 293

Query: 331 NRRIDILV 338
           NRRI++++
Sbjct: 294 NRRIEVIL 301


>gi|326316328|ref|YP_004234000.1| type IV / VI secretion system protein, DotU family [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373164|gb|ADX45433.1| type IV / VI secretion system protein, DotU family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 18/122 (14%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284
           S +  R   +F+ +S+   P  + V+Q++   L   +  + + G++D  P R  AR   N
Sbjct: 307 STVTLRGDGLFEPASTEVKPRYVAVIQRVASALNEVSGKVVVNGYSDNQPIRT-ARFPSN 365

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336
           W LS +RA +   +L ++     R+ K  G A       SDP+         + NRR++I
Sbjct: 366 WHLSQERAQAVAAMLQRTITDGSRV-KAEGRAE------SDPIAPNSTPEGRALNRRVEI 418

Query: 337 LV 338
           ++
Sbjct: 419 VL 420


>gi|255016489|ref|ZP_05288615.1| putative flagellar motor protein MotB [Bacteroides sp. 2_1_7]
          Length = 280

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 177 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 229


>gi|255530239|ref|YP_003090611.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343223|gb|ACU02549.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 280

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E+IL  KR +    L +K+   L G        G+  E     + +S+ D+    +F   
Sbjct: 113 EEILR-KRDEATNKLKEKLQQALLGFTQS----GLTVEIKNGKVYVSLTDKL---LFPSG 164

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
           S I   +    L ++ +VL    E+ I++ GHTD+    N+   +DNW LS+ R+ S  +
Sbjct: 165 SIIIDEKGKQALTQLADVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVR 224

Query: 298 VLMK-SGVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILV 338
            L +   V   R++         L    S    S NRRI+I++
Sbjct: 225 FLTEICKVQPVRMTATGKGEFQPLGPNTSAESRSKNRRIEIVL 267


>gi|120436189|ref|YP_861875.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578339|emb|CAL66808.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 620

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S   P+    L K+  ++   +   VI I  HTD    R     N +L+  RA S
Sbjct: 512 FDFDKSNIRPDAATELDKLVALMKDEYPELVIEIGSHTDR---RGTNSYNEKLAERRAKS 568

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            Y  L+  G+SEDRI +  G+   +  I  D  +  + +++
Sbjct: 569 TYDYLVSKGISEDRIVEFKGYGETKPAIDCDRCSEKDHQLN 609


>gi|34556728|ref|NP_906543.1| motility protein MotB [Wolinella succinogenes DSM 1740]
 gi|34482442|emb|CAE09443.1| MOTB PROTEIN [Wolinella succinogenes]
          Length = 255

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDK-SSSIPLPETIVVLQKIG-EVLAHSTEV-ISIRG 270
            V  E    G ++SI  +    +F+  S++I   E I+ L++   E+   S ++ I + G
Sbjct: 110 AVKMEEAEDGFILSIPSEL---LFESGSATITNKEGILFLKRTALEINKLSNDMHIKVIG 166

Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD    R  A  +DNW LS+ R  +  ++L++  V+  RIS         +   + P  
Sbjct: 167 HTDNDRLRPTATYKDNWELSIARGVNVAKMLLEERVNPARISAGGNGEFDPVASNATPEG 226

Query: 329 SA-NRRIDI 336
            A NRR+D+
Sbjct: 227 KAKNRRVDL 235


>gi|260891212|ref|ZP_05902475.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260859239|gb|EEX73739.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 172

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD +S+    E    L+K+ + +    + ISI G+TD+   R   R+   LSL RA S  
Sbjct: 71  FDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTREYNRE---LSLRRAESLE 127

Query: 297 QVLMKSGVSEDRI--SKISGFAHHRLKIASDPMNSANRRIDI 336
           + L+  G+S +RI  +K +G A+      ++   +ANRRI+I
Sbjct: 128 EKLIDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169


>gi|256828444|ref|YP_003157172.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577620|gb|ACU88756.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324
           + I GH+D    R    DN RLSL+RA  A  +L+K G+    +   S G  +  +  A 
Sbjct: 127 VRINGHSDTIGQRE---DNARLSLERAEGARDILIKEGIDPSIMQVFSHGEGNLLIPTAD 183

Query: 325 DPMNSANRRIDILV 338
           D     NRR+++LV
Sbjct: 184 DTPEPRNRRVEVLV 197


>gi|154173716|ref|YP_001407729.1| flagellar motor protein MotB [Campylobacter curvus 525.92]
 gi|112803650|gb|EAU00994.1| flagellar motor protein [Campylobacter curvus 525.92]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 26/37 (70%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ ++ I+A + +  KA++  F
Sbjct: 16 WAVPYADFLSLLLALFIALYAISAANTEKVKALKTEF 52


>gi|298209046|ref|YP_003717225.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83848973|gb|EAP86842.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 286

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 37/211 (17%)

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSIN--KEENYFLPPLSKEKILAMKRKKRLQ-DLAKK 198
             K +LT  + KG     +T+LEKS+   KE++  +  L      A+ RK  +   L   
Sbjct: 78  ETKGNLTTLTTKG-----ATNLEKSLESLKEKDLQIKTLRD----AVTRKDSVTLALVTS 128

Query: 199 ISSTLSGLVAD-----NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +   L G +AD     N+ KGV++        +SI D+    +F   S         VL 
Sbjct: 129 LKGAL-GNMADEDIEINVEKGVVY--------VSISDKL---LFKSGSYNVTSRAKEVLG 176

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           K+  V+    ++   + GHTD  P +N +  DNW LS  RA S  ++L  + GV   R++
Sbjct: 177 KVATVVNAKPDIEFMVEGHTDNVPIKNAVLEDNWDLSAKRATSVVRILQDEYGVPPQRMT 236

Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILV 338
             +G +++ + +AS+      + NRR  I+V
Sbjct: 237 A-AGRSYY-IPVASNDTAEGRAKNRRTRIVV 265


>gi|315638943|ref|ZP_07894114.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21]
 gi|315480972|gb|EFU71605.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISETNPAKVEALKTEF 52


>gi|237799262|ref|ZP_04587723.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|237806231|ref|ZP_04592935.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331022118|gb|EGI02175.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331027345|gb|EGI07400.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 296

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSQ 50



 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    ++P  +   +++K+ +++      I + G TD  P R      NW LS  R+ S
Sbjct: 139 LFVSGDAMPSDKAFTIIEKVSDIVKRFDNPIHVEGFTDDQPIRTAQFPTNWELSSARSAS 198

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
             ++L   GV+  R++ + G+   +  +AS+   +    NRR+ +++
Sbjct: 199 IVRMLAMDGVNPARLASV-GYGEFQ-PVASNATAAGRAKNRRVVLVI 243


>gi|295675817|ref|YP_003604341.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295435660|gb|ADG14830.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD SS    P    VL ++ + L  + EV+ S+ GHTD +      + N  LS++RA S 
Sbjct: 108 FDTSSYAIKPTFAPVLDQLAQTLQQNPEVVASVVGHTDNT---GSLQYNQTLSVNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
              L + G++  R+S  +G   ++  IA   ++   +ANRR++I +
Sbjct: 165 TGYLTQRGIAPQRLSA-TGMGPNQ-PIADNNTEAGRAANRRVEIYL 208


>gi|46202032|ref|ZP_00053894.2| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 274

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           V+ I GHTD  P        NW LS  RA +  + L  +GV +DR++  +GF   +    
Sbjct: 196 VLRIDGHTDRRPMVSGRYPSNWELSTARAITVLRTLAANGVPKDRLA-AAGFGEFQ---P 251

Query: 324 SDPMN-----SANRRIDILVEDR 341
            DP +     + NRRI+I  + R
Sbjct: 252 VDPADNEAAYAKNRRIEIRFDQR 274


>gi|256842297|ref|ZP_05547801.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736181|gb|EEU49511.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 295

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301
            L K+ EVL    ++ + I GHTD+ P  N A  +DNW LS+ RA S  ++L K
Sbjct: 192 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 244


>gi|92113628|ref|YP_573556.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91796718|gb|ABE58857.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 283

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
            + GV+   +  G+   I    N  +F  S +    E   VL+++ + L      I+I G
Sbjct: 148 FIDGVVVTQSAQGLNFRI---ENHLLFSSSQADLTDEGRAVLRQLLDSLRAFDGEITIEG 204

Query: 271 HTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           HTD+ P   IA D    NW LS  RA +  + L+  G+  + +  + G+A  R   ++D 
Sbjct: 205 HTDSRP---IATDRFPSNWELSTARATAVLRFLVGEGLDSEALRAV-GYADTRPLQSNDS 260

Query: 327 MN--SANRRIDILVEDRQ 342
               +ANRR+++++ + +
Sbjct: 261 AEGRAANRRVELVLHEPE 278


>gi|146309839|ref|YP_001174913.1| putative outer membrane lipoprotein [Enterobacter sp. 638]
 gi|145316715|gb|ABP58862.1| OmpA/MotB domain protein [Enterobacter sp. 638]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G  I I++  +   FD SS+   P     L  +  VL  +S   +++ G
Sbjct: 92  MQGTGVSVTRNGDNI-ILNMPSNVTFDSSSATLKPAGANTLTGVAMVLKEYSKTAVNVIG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TD++  +++   N RLS  RA S    L+  GV+ +RI + SG       IAS+  N+A
Sbjct: 151 YTDSTGSQDL---NMRLSQQRADSVASSLITQGVAANRI-RTSGMGPAN-PIASN--NTA 203

Query: 331 -----NRRIDILVEDRQ 342
                NRR++I +   Q
Sbjct: 204 EGKAQNRRVEITLSPIQ 220


>gi|77918775|ref|YP_356590.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380]
 gi|77544858|gb|ABA88420.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I+  ++  +FD  S+   P  + +L+++  ++     ++ I GHTD     N A  NW +
Sbjct: 113 ILRVKDAILFDAGSTELKPTALPILREVAGLVKPLPLLLRIEGHTDNQKPANPAITNWDI 172

Query: 288 SLDRAYSAYQVLMKSGVSE-DRISKISGFAHHR-LKIASDPMNSA-NRRIDILVED 340
           S+ RA +  +      +   DR+S + G+   R +     P   A NRR++ ++E+
Sbjct: 173 SVQRAVAVLKFFAGEDLLPLDRLSAV-GYGDQRPVAPGLGPEQQALNRRVEFVLEN 227


>gi|315057756|gb|ADT72085.1| Flagellar motor rotation protein MotB [Campylobacter jejuni
          subsp. jejuni S3]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|328470797|gb|EGF41708.1| hypothetical protein VP10329_08362 [Vibrio parahaemolyticus 10329]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++V     E  +  + IS+   R   +F+  S+  +     V+ K
Sbjct: 287 IAERISMYLATEIGKDLVT---VEALQDRVRISL---RAQDLFESGSASVVAYIQPVISK 340

Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312
           +   L  +   I I GHTD  P F +    NW LSL RA S + Q++  S +    I + 
Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEG 400

Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336
            G A   ++  S+   + NRRI+I
Sbjct: 401 LGDARPLVENDSEENRAMNRRIEI 424


>gi|186476941|ref|YP_001858411.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184193400|gb|ACC71365.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    P    VL ++ + L  + EV++ + GHTD++        N  LS++RA S 
Sbjct: 109 FDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHTDST---GQPAYNQTLSVNRAQSV 165

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
            Q L   GV+  R+S     A+  +   +     A NRR++I +
Sbjct: 166 AQQLATDGVAPQRLSATGMGANQPIADNNTETGRAQNRRVEIYL 209


>gi|108756980|ref|YP_628607.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|108460860|gb|ABF86045.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 409

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E+ L  +R+ RL D  ++ +  L+ L  ++  + V       G+++++  Q    +F  +
Sbjct: 239 ERELERERQARL-DAEQRATEALTQL--ESTARDVKVREEERGLVLTMSGQ---VLFASN 292

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQV 298
           +   LP     L ++   L  S   + I GHTD     ++  D  N  LS  RA    + 
Sbjct: 293 AVDLLPTAREQLTEVAHALKVSDSPMVIEGHTD-----SMGSDAMNEALSYRRAEHVREF 347

Query: 299 LMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA-NRRIDILV 338
           L+  GVS DRI ++ G   +R  +A  S P   A NRR++I++
Sbjct: 348 LISQGVSRDRI-QVRGLGEYR-PVANNSTPEGRANNRRVEIIL 388


>gi|283955187|ref|ZP_06372689.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 414]
 gi|283793400|gb|EFC32167.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 414]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|283955761|ref|ZP_06373252.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|283792716|gb|EFC31494.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|153952261|ref|YP_001398613.1| flagellar motor protein MotB [Campylobacter jejuni subsp. doylei
          269.97]
 gi|152939707|gb|ABS44448.1| putative chemotaxis protein MotB [Campylobacter jejuni subsp.
          doylei 269.97]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|57237387|ref|YP_178400.1| flagellar motor protein MotB [Campylobacter jejuni RM1221]
 gi|86151261|ref|ZP_01069476.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|86153764|ref|ZP_01071967.1| flagellar motor component MotB [Campylobacter jejuni subsp.
          jejuni HB93-13]
 gi|121612816|ref|YP_001000046.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
          81-176]
 gi|148926431|ref|ZP_01810114.1| putative flagellar motor protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|157414633|ref|YP_001481889.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
          81116]
 gi|167005002|ref|ZP_02270760.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 81-176]
 gi|205356014|ref|ZP_03222782.1| putative flagellar motor protein [Campylobacter jejuni subsp.
          jejuni CG8421]
 gi|315123901|ref|YP_004065905.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
 gi|57166191|gb|AAW34970.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221]
 gi|85841608|gb|EAQ58855.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|85842725|gb|EAQ59937.1| flagellar motor component MotB [Campylobacter jejuni subsp.
          jejuni HB93-13]
 gi|87250338|gb|EAQ73296.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 81-176]
 gi|145844594|gb|EDK21700.1| putative flagellar motor protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|157385597|gb|ABV51912.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|205346138|gb|EDZ32773.1| putative flagellar motor protein [Campylobacter jejuni subsp.
          jejuni CG8421]
 gi|307747273|gb|ADN90543.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni M1]
 gi|315017623|gb|ADT65716.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
 gi|315931586|gb|EFV10552.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|86148944|ref|ZP_01067176.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|88597451|ref|ZP_01100686.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|218561995|ref|YP_002343774.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
          NCTC 11168]
 gi|85840302|gb|EAQ57559.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni CF93-6]
 gi|88190512|gb|EAQ94486.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|112359701|emb|CAL34487.1| putative flagellar motor protein [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|284925608|gb|ADC27960.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
          IA3902]
 gi|315927861|gb|EFV07186.1| ompA family protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928678|gb|EFV07961.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|298293019|ref|YP_003694958.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
 gi|296929530|gb|ADH90339.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
          Length = 344

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRN-IARDNWR 286
            FD++S+   P+ +  L K+ E L    +        V+ + GHTD  P    +   NW+
Sbjct: 229 FFDRASADLRPDAMPALDKLAEALVALEKEIPSDISWVLRVDGHTDNRPIATPLFPSNWQ 288

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341
           LS  R+ +  Q L   GVS   +   +GF  ++      SD   + NRRI++ + +R
Sbjct: 289 LSAARSIAVVQYLAGKGVSPQHLVA-AGFGEYQPIDDADSDDARARNRRIELKLTER 344


>gi|187929080|ref|YP_001899567.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J]
 gi|187725970|gb|ACD27135.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
          Length = 167

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 16/97 (16%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++  VLA +   +++ GHTD +P  R+    N  LS  RA +  + L + G++ DR+S
Sbjct: 66  LDRLATVLADTRGKVTVLGHTDDAPGPRDRMESNLALSTARATAVARHLQERGIASDRLS 125

Query: 311 KISGFAHHRLKIASDPMN--------SANRRIDILVE 339
            I        +   DP+         + NRR++I++E
Sbjct: 126 IIG-------RGVKDPVGDNRTAAGRALNRRVEIILE 155


>gi|152984991|ref|YP_001349219.1| flagellar motor protein MotD [Pseudomonas aeruginosa PA7]
 gi|150960149|gb|ABR82174.1| probable chemotaxis protein [Pseudomonas aeruginosa PA7]
          Length = 296

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 11/70 (15%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88
          W + YADF+T+L AFF+VM+ I++ ++   K + +     FN   ++L     G   E+ 
Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDRSLKPIPIG---EER 73

Query: 89 P----PERSS 94
          P    PER+S
Sbjct: 74 PRTTEPERTS 83


>gi|189466239|ref|ZP_03015024.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM
           17393]
 gi|189434503|gb|EDV03488.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM
           17393]
          Length = 224

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T  +GIL       N+     +S   L E   +L++        T  I+I GHTD     
Sbjct: 106 TFESGILFGF----NSSALSNTSKASLRELAQILKE------DPTTDIAIVGHTDKV--- 152

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
                N ++S DRAY+    L   GVS  +  ++ G  +++     D M  S NRR+DI 
Sbjct: 153 GTYEANMKVSKDRAYTVENYLQDCGVSPAQFKQVEGVGYNQY---DDSMTASQNRRVDIY 209

Query: 338 V 338
           +
Sbjct: 210 M 210


>gi|183222583|ref|YP_001840579.1| putative outer-membrane protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912618|ref|YP_001964173.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777294|gb|ABZ95595.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781005|gb|ABZ99303.1| Putative outer-membrane protein; putative signal peptide
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 670

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSL--DRAYSAYQVLMKSGVSEDRISKISGF 315
           ++ H  E + I GHTD     NI    + ++L  DRA S YQ L   GV ++R+ K+  +
Sbjct: 590 LIHHKNEKVEIGGHTD-----NIGNKEYNINLSEDRALSVYQYLRLKGVPKERM-KVQAY 643

Query: 316 AHHRLKIA---SDPMNSANRRIDI 336
            H+   IA   ++   S NRR++ 
Sbjct: 644 -HYSQPIADNETEEGRSRNRRVNF 666


>gi|261342404|ref|ZP_05970262.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315039|gb|EFC53977.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 451

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE + V+++I   +      + I GHTDA+P  R    +N  LS  RA    Q  + +G+
Sbjct: 355 PEMVKVIERIASEVRRVNGDVVIVGHTDATPISRPGLPNNVVLSEKRAAEVAQYFISAGL 414

Query: 305 SEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338
            E ++ K+ G    +  +ASD      + NRR++  V
Sbjct: 415 PESKV-KVRGVGSSQ-PVASDATAQGRAKNRRVEFFV 449


>gi|94270700|ref|ZP_01291804.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93450704|gb|EAT01786.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 227

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KSGVSED 307
           +L ++GE++  S   + + GHTD  P R  A    NW LS  RA +  + L+ +  +  D
Sbjct: 110 LLDQLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRD 169

Query: 308 RISKISGFAHHRLK-IASDPM---NSANRRIDI 336
           R++ +   AH   K +A++      +ANRR++ 
Sbjct: 170 RLAAV---AHADGKPVATNDTAEGRAANRRVEF 199


>gi|94264078|ref|ZP_01287877.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93455494|gb|EAT05684.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KSGVSED 307
           +L ++GE++  S   + + GHTD  P R  A    NW LS  RA +  + L+ +  +  D
Sbjct: 118 LLDQLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRD 177

Query: 308 RISKISGFAHHRLK-IASDPM---NSANRRID 335
           R++ +   AH   K +A++      +ANRR++
Sbjct: 178 RLAAV---AHADGKPVATNDTAEGRAANRRVE 206


>gi|78485928|ref|YP_391853.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364214|gb|ABB42179.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 259

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 23/123 (18%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-----------EQYFNPFGKNLMTASK 81
           W I YAD MT+++AFF+++  I+    D  + +           E+  NP  +NL +A  
Sbjct: 41  WLITYADAMTLILAFFILILSISEIKQDKFETLQTNLGQGLLKKEKVVNPL-QNLESALS 99

Query: 82  GIFDEQ--NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL------ENNIFY 133
            + +    NP E  + N+ +L ID       +  ++GST  + + ++L      E N F 
Sbjct: 100 KVLESNQINPAEAMTLNENELRID---LPGELLFEVGSTQLEPKSKQLITALAKEINAFP 156

Query: 134 LSN 136
           L N
Sbjct: 157 LHN 159


>gi|57505391|ref|ZP_00371319.1| probable flagellar motor protein Cj0336c [Campylobacter
          upsaliensis RM3195]
 gi|57016216|gb|EAL53002.1| probable flagellar motor protein Cj0336c [Campylobacter
          upsaliensis RM3195]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISETNPAKVEALKTEF 52


>gi|146282902|ref|YP_001173055.1| flagellar motor protein MotD [Pseudomonas stutzeri A1501]
 gi|145571107|gb|ABP80213.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
          Length = 278

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A+ +  T   L+A++ +      T R   L   I+  ++ +F    ++P  +   +
Sbjct: 99  LERIAQSMRETFGELIANDQL------TIRGNELWIEIELSSSLLFPSGDALPNDQAFQL 152

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSED 307
           + K+  +LA     + + G TD  P   I+ D    NW LS  RA S  ++L   GV+  
Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLP---ISTDKFPTNWELSAARAGSVVRMLAAQGVNPS 209

Query: 308 RISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           R++ + G+   +     A+    + NRR+ ++V
Sbjct: 210 RLAAV-GYGEFQPVADNATAEGRARNRRVVLVV 241


>gi|118443271|ref|YP_877986.1| chemotaxis motB protein [Clostridium novyi NT]
 gi|118133727|gb|ABK60771.1| chemotaxis motB protein [Clostridium novyi NT]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286
           I++ +   +FD   +     +  +L KI  ++      I I GHTD  P  N   D NW 
Sbjct: 121 ILELKENILFDSGQADLKLSSKEILDKISALIESVPNGIIIEGHTDNVPIHNSKYDSNWE 180

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           LS  RA +  +  + S   +    + +G+  +     +D     + NRR++IL+
Sbjct: 181 LSTQRAVNVLKYFVVSKGEKPEKFQAAGYGEYHPIAKNDNYVDRAKNRRVNILI 234


>gi|4580974|gb|AAD24561.1|AF117969_1 OprF [Pseudomonas fluorescens]
          Length = 326

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     +  D  N +LS  RA 
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
           +  QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 276 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|332799185|ref|YP_004460684.1| OmpA/MotB domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696920|gb|AEE91377.1| OmpA/MotB domain protein [Tepidanaerobacter sp. Re1]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 12/160 (7%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           +++ + ++  + L +KI   +     DNI  GV       G+++  ++     +FD   +
Sbjct: 64  LISAEEQREFELLEEKIQKIID---EDNI-GGVQVNLDERGLVVRFVE---GVLFDSGKA 116

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
               +   +L K+  +L  S   I I GHTD  P        NW LS  RA +  + +++
Sbjct: 117 DIRNDAKEILDKLAPLLIESHRQIRIEGHTDNLPIHTSEFPSNWELSTARAVNVVKYMIE 176

Query: 302 SGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
                  I   +G++ +R  IA   S+   + NRR+DI++
Sbjct: 177 RHNLSPYIISAAGYSEYR-PIAPNDSEKNRALNRRVDIII 215


>gi|332292958|ref|YP_004431567.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171044|gb|AEE20299.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 640

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           LQ+I +++  +   +I I  HTD    R  A  N  LS +RA S    L+K+G++  RI 
Sbjct: 545 LQRIIDIMNEYPALIIKIESHTDQ---RGGASYNQTLSENRATSTRDYLIKNGITSSRIE 601

Query: 311 KISGFAHHR-LKIASDPMNSA-------NRRIDILVEDR 341
              GF   R + I  +  +S        NRR D +V  R
Sbjct: 602 SAKGFGESRPIHICDEADDSCTEVQYLENRRSDFIVVSR 640


>gi|304398041|ref|ZP_07379916.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304354327|gb|EFM18699.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G  I +++  N   FD +SS   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRNGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVSMVLKEYPKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
           +TD++  R +   N RLS  RA S    L+  GV+ DR+ ++ +G  +     +++   +
Sbjct: 151 YTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLRTQGAGPDNPVATNSTEAGKA 207

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|84514795|ref|ZP_01002158.1| flagellar MotB protein [Loktanella vestfoldensis SKA53]
 gi|84510954|gb|EAQ07408.1| flagellar MotB protein [Loktanella vestfoldensis SKA53]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++  V    T  + + GHTD  P  F  + RDNW L+  RA S  Q +  S  +  R
Sbjct: 316 IIDELAAVTVDPTSKVVVSGHTDNVPISFGALYRDNWDLAAARAASVVQEIEASIPAPGR 375

Query: 309 ISKISGFAHHRLKIASDPMNSA----NRRIDILVEDRQ 342
             ++S  +    K  +D   +     NRRI++ +E  Q
Sbjct: 376 --EMSAISFGETKPVADNATAEGRERNRRIELEIEFEQ 411


>gi|257125599|ref|YP_003163713.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049538|gb|ACV38722.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 17/97 (17%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E   VL+ I   +  +  ++SI G+TD S    IA  N RLSL RA      L++ G+S+
Sbjct: 160 EAYSVLKDIKNYIEENDYLVSIVGYTDES---GIAAYNNRLSLRRAEKVSSKLLELGLSK 216

Query: 307 DRISKISGFAHHRLKIASDPMNS--------ANRRID 335
           DRI  + G   +      +P+NS         NRR++
Sbjct: 217 DRILDLIGRGEN------NPINSNETKEGRERNRRVE 247


>gi|294787848|ref|ZP_06753092.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
 gi|294484141|gb|EFG31824.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L    + LA   E  ISI GHTD++   +I   N  LS +RA +  Q L+  GVS  RIS
Sbjct: 127 LNGAAQTLATYNETTISIIGHTDSTGNDSI---NIPLSQNRANAVAQYLISKGVSSSRIS 183

Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILV 338
                A   +   S     A NRR++IL+
Sbjct: 184 TAGHGASQPIASNSTAEGRAQNRRVEILI 212


>gi|327481242|gb|AEA84552.1| flagellar motor protein MotD [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A+ +  T   L+A++ +      T R   L   I+  ++ +F    ++P  +   +
Sbjct: 99  LERIAQSMRETFGELIANDQL------TIRGNELWIEIELSSSLLFPSGDALPNNQAFQL 152

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSED 307
           + K+  +LA     + + G TD  P   I+ D    NW LS  RA S  ++L   GV+  
Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLP---ISTDKFPTNWELSAARAGSVVRMLAAQGVNPS 209

Query: 308 RISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           R++ + G+   +     A+    + NRR+ ++V
Sbjct: 210 RLAAV-GYGEFQPVADNATAEGRARNRRVVLVV 241


>gi|229592015|ref|YP_002874134.1| putative outer membrane porin A protein [Pseudomonas fluorescens
           SBW25]
 gi|229363881|emb|CAY51363.1| putative outer membrane porin A protein [Pseudomonas fluorescens
           SBW25]
          Length = 326

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     +  D  N +LS  RA 
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
           +  QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 276 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|330961246|gb|EGH61506.1| flagellar motor protein MotD [Pseudomonas syringae pv. maculicola
          str. ES4326]
          Length = 265

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSQ 50


>gi|57168474|ref|ZP_00367608.1| chemotaxis motB protein, putative [Campylobacter coli RM2228]
 gi|305432893|ref|ZP_07402051.1| chemotaxis motB protein [Campylobacter coli JV20]
 gi|57020282|gb|EAL56956.1| chemotaxis motB protein, putative [Campylobacter coli RM2228]
 gi|304444047|gb|EFM36702.1| chemotaxis motB protein [Campylobacter coli JV20]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ T+    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52


>gi|311031291|ref|ZP_07709381.1| flagellar motor protein MotS [Bacillus sp. m3-13]
          Length = 254

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           LQ+L  ++ + L    A+N ++ V+    T  GI++ + ++    +++ + +  LP    
Sbjct: 101 LQELLVEVQTFL----AENDLEDVVVANRTERGIVLVLEEKV---LYETAEARILPIAHP 153

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDR 308
            L K+G +L     ++ + GHTD  P        NW LS  RA S  + L+ +  +  +R
Sbjct: 154 FLDKVGTLLTKIPNLVKVEGHTDNRPISTEKFPSNWELSAARASSVIRYLVDAHDLDPER 213

Query: 309 ISKISGFAHHR--LKIASDPMNSANRRIDILVEDRQ 342
              + G+   R  ++  S+     NRR++I++ D Q
Sbjct: 214 FIAV-GYGDTRPIVENTSNANYQKNRRVEIVISDPQ 248


>gi|119357472|ref|YP_912116.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354821|gb|ABL65692.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 229

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD--NWRLSLDRA 292
           +F+  SS     +   ++K+  +LA   +  + I GHTD+     +  D  N  LS +RA
Sbjct: 111 LFNTGSSAITSTSRYNIEKLAGILAKYDDTNLIIEGHTDS-----VGSDSMNQTLSENRA 165

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
            S   +L   GVS  R+S I G+   R  IAS+   S    NRR+++L+
Sbjct: 166 QSVANLLKAYGVSSSRLSAI-GYGESR-PIASNETESGRRLNRRVEVLI 212


>gi|90412166|ref|ZP_01220172.1| Conserved hypothetical outer membrane protein [Photobacterium
           profundum 3TCK]
 gi|90326890|gb|EAS43275.1| Conserved hypothetical outer membrane protein [Photobacterium
           profundum 3TCK]
          Length = 220

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           PE+  VL+ I + L +S + +++ GHTD+   +     N+ L L RA S+ Q L+ + V 
Sbjct: 130 PESQTVLKTIAQKLKNSPQTVTLNGHTDSVGPQGY---NYTLGLQRAKSSMQYLIDNEVK 186

Query: 306 EDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  + SK  G         +    + NRR+D+++
Sbjct: 187 DTNLKSKTYGETQPIESNTTSQGRAMNRRVDVVM 220


>gi|330502789|ref|YP_004379658.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01]
 gi|328917075|gb|AEB57906.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01]
          Length = 269

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYS 294
           +F    +IP  +   +++K+ ++LA     + + G TD  P +      NW LS  RA S
Sbjct: 130 LFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTAQYPTNWELSTARASS 189

Query: 295 AYQVLMKSGVSEDRISKI 312
             ++L   GV   R++ +
Sbjct: 190 IVRMLAMDGVDPSRLAAV 207



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K + +              G+F   N P+R
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLT-----------GVF---NQPDR 61

Query: 93 S 93
          S
Sbjct: 62 S 62


>gi|289678953|ref|ZP_06499843.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
          FF5]
          Length = 234

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + Q
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50


>gi|74055057|gb|AAZ95862.1| PomB [Aeromonas hydrophila]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISSTLSGLVAD 209
           +GK L  + ++  + +  E+  LP  S   I  +  K+    LAK   ++  ++  LV  
Sbjct: 72  QGKSLLNN-EVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQLKESMGTLVDA 130

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            +VK  L +   T      ++  +  +F   S+        VL  + ++L      + +R
Sbjct: 131 GVVKLTLDDNWLT------VELSSGLLFGSGSAFMSTNADPVLNTLSDILKPVDNYVRVR 184

Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           G+TD     N I R NW LS  RA +   VL+  G++  R++
Sbjct: 185 GYTDNQQINNEIFRSNWTLSAARAEAVLTVLIAKGIAPQRLA 226


>gi|77457796|ref|YP_347301.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf0-1]
 gi|77381799|gb|ABA73312.1| putative chemotaxis protein [Pseudomonas fluorescens Pf0-1]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K I +
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKIISE 50



 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N +      T R   L   I+  ++ +F    ++P      +
Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDIAFNI 153

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +L      I + G TD  P R      NW LS  R+ S  ++L   GV+  R++
Sbjct: 154 IDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLA 213

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
            + G+   +     A+    + NRR+ ++V
Sbjct: 214 SV-GYGEFQPVANNATAEGRAKNRRVVLVV 242


>gi|304393260|ref|ZP_07375188.1| OmpA/MotB domain protein [Ahrensia sp. R2A130]
 gi|303294267|gb|EFL88639.1| OmpA/MotB domain protein [Ahrensia sp. R2A130]
          Length = 343

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--L 320
           V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  +R+   +GF   +   
Sbjct: 264 VLRVDGHTDNIPLSGSGRYADNWELSSGRATSVVKYLITQGVPAERLVA-AGFGEFQPLE 322

Query: 321 KIASDPMNSANRRIDI 336
            + +      NRRI++
Sbjct: 323 DVDTQEARDRNRRIEL 338


>gi|317503691|ref|ZP_07961708.1| OmpA family protein [Prevotella salivae DSM 15606]
 gi|315665212|gb|EFV04862.1| OmpA family protein [Prevotella salivae DSM 15606]
          Length = 683

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +D + +   PE+   L  +  +L  +  V I I  H D   +R  A  N RLS  RA +
Sbjct: 521 FYDFNKATLRPESTAALDDLVALLNENPHVTIEISAHCD---YRGSAEYNLRLSQQRAEN 577

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI 322
             + L+  G+S DR++ + G+   R K+
Sbjct: 578 VVRYLISKGISADRLTAV-GYGKQRPKV 604


>gi|260886728|ref|ZP_05897991.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185]
 gi|330839448|ref|YP_004414028.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863580|gb|EEX78080.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185]
 gi|329747212|gb|AEC00569.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
          +W + Y+D MT+L+A F+ ++ ++ATD      + Q F        T     F +  P E
Sbjct: 17 AWLLPYSDLMTLLLATFIALYAMSATDSSKMAQMAQAFT---AAFNTGGPSFFSQMGPSE 73


>gi|332975535|gb|EGK12425.1| OmpA domain protein [Desmospora sp. 8437]
          Length = 243

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           L K+G+ L      + I G+TD    R  A  N +LS +RA +    L+K  G++ D + 
Sbjct: 155 LDKLGKSLKEYKGTVRIYGYTDD---RGSAAYNQKLSQERAEAVKAYLVKECGIAGDHL- 210

Query: 311 KISGFA--HHRLKIASDPMNSANRRIDILVEDR 341
           KI GF   H  +   SD     NRR++I+V+ +
Sbjct: 211 KIKGFGKKHPVVPNNSDSNRQKNRRVEIIVDSK 243


>gi|317133447|ref|YP_004092761.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471426|gb|ADU28030.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 259

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271
           K V   +T  G++I++ D  NT     S+ +  P   +VL +IG+ L   +  +I + GH
Sbjct: 110 KNVDLSSTSKGLVITLKD--NTLYTPGSAVMNQPGQDLVL-RIGDALKQVNYALIIVEGH 166

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD+ P  N   +DN  LS  RA +  + L+  G+   +I+ +       +     P N A
Sbjct: 167 TDSDPIHNAQFQDNIELSSARADNVERALIGRGLDAAKIAAMGRGDTVPVAPNDTPANKA 226

Query: 331 -NRRIDILV 338
            NRR+ I +
Sbjct: 227 KNRRVVITI 235


>gi|312793260|ref|YP_004026183.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180400|gb|ADQ40570.1| OmpA/MotB domain protein [Caldicellulosiruptor kristjanssonii
          177R1B]
          Length = 257

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          +K+VA  +  N+   W I YAD +T+L+ +F+VM+ ++  D D        F  F ++L 
Sbjct: 3  RKRVAEPEKENH-ERWLITYADLITLLLIYFIVMYSMSKLDMDK-------FKNFTESLT 54

Query: 78 TASKG---IFDEQNP 89
          +  KG   IF+   P
Sbjct: 55 SVLKGTAYIFENSGP 69


>gi|269962960|ref|ZP_06177298.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832322|gb|EEZ86443.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++ D+A++IS  L    A  I KG V  +     + ISI  Q    +F+  S+  +    
Sbjct: 283 QVTDIAERISMYL----ATEISKGLVTVDALPDRVRISIKAQ---DLFESGSAEVVEYIQ 335

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V+ K+   L  +   I + GHTD  P F +    NW LSL RA +  + L+ +   + R
Sbjct: 336 PVISKLARTLEATEGKILVAGHTDDKPIFTSKYPSNWHLSLARATAMSEQLIANSALKGR 395

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDI 336
           +    G    R  +   SD   + NRRI+I
Sbjct: 396 VLP-EGLGDARPLVDNTSDENRALNRRIEI 424


>gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 427

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322
           V+ + GHTD  P R      NW LS  RA S    L+  GV+  R++  +GF  +H L  
Sbjct: 347 VLMVEGHTDRRPIRTEQFPSNWELSSARAQSIVNYLISRGVAPRRLAA-AGFGEYHPLDA 405

Query: 323 AS-DPMNSANRRIDI 336
            S +   S NRRI++
Sbjct: 406 GSTEAAFSRNRRIEM 420


>gi|313681736|ref|YP_004059474.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154596|gb|ADR33274.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 266 ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322
           ISIRG+TD  P    A  +DN  LS  RA +  + L+++GV+ +R+S    G A    + 
Sbjct: 182 ISIRGYTDNQPLPPGAGYKDNIELSSRRAETVMRELIRNGVAPERLSTAGFGAAKPVAEN 241

Query: 323 ASDPMNSANRRIDILV 338
            ++   + NRR++  +
Sbjct: 242 TTEENRAKNRRVEFYM 257


>gi|222823421|ref|YP_002574995.1| outer membrane fibronectin-binding protein [Campylobacter lari
           RM2100]
 gi|222538643|gb|ACM63744.1| outer membrane fibronectin-binding protein [Campylobacter lari
           RM2100]
 gi|244538678|dbj|BAH82830.1| fibronectin-binding protein [Campylobacter lari]
 gi|244538683|dbj|BAH82834.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275
           R G L+  I    T M +           PE    +Q++G+VL  + +  +I  GHTD +
Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332
             +     N +LSL+RA +  + L K+GV++++I+   G+   +  IAS+        NR
Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318

Query: 333 RID 335
           R++
Sbjct: 319 RVE 321


>gi|312127873|ref|YP_003992747.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777892|gb|ADQ07378.1| OmpA/MotB domain protein [Caldicellulosiruptor hydrothermalis
          108]
          Length = 257

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          +K+VA  +  N+   W I YAD +T+L+ +F+VM+ ++  D D        F  F ++L 
Sbjct: 3  RKRVAEPEKENH-ERWLITYADLITLLLIYFIVMYSMSKLDMDK-------FKNFTESLT 54

Query: 78 TASKG---IFDEQNP 89
          +  KG   IF+   P
Sbjct: 55 SVLKGTAYIFENSGP 69


>gi|244538668|dbj|BAH82822.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275
           R G L+  I    T M +           PE    +Q++G+VL  + +  +I  GHTD +
Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332
             +     N +LSL+RA +  + L K+GV++++I+   G+   +  IAS+        NR
Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318

Query: 333 RID 335
           R++
Sbjct: 319 RVE 321


>gi|15895120|ref|NP_348469.1| flagellar motor protein MotB [Clostridium acetobutylicum ATCC
          824]
 gi|15024821|gb|AAK79809.1|AE007693_7 Flagellar motor protein MotB [Clostridium acetobutylicum ATCC
          824]
 gi|325509259|gb|ADZ20895.1| Flagellar motor protein MotB [Clostridium acetobutylicum EA 2018]
          Length = 254

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
          +W I YAD +T+L+A F+VM+ ++  D+   + + Q F+     + ++ KG+  E
Sbjct: 16 TWLIPYADMLTLLLALFIVMFAMSKVDNKKLQKMSQEFSA----IFSSGKGVLVE 66


>gi|323528401|ref|YP_004230553.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323385403|gb|ADX57493.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 233

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F+   +  LPE+  VL +I  VL   +   I + GHTD+ P      + NW LS  RA 
Sbjct: 126 LFNSGDARLLPESFAVLGQIATVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAG 185

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR-IDILVE 339
           +  +     G+   R++ I    +  L I +D   +A  R + ILVE
Sbjct: 186 AVVRFFADRGIEAHRMAAIGRADNFPLIIGNDAAANAANRRVTILVE 232


>gi|244538673|dbj|BAH82826.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275
           R G L+  I    T M +           PE    +Q++G+VL  + +  +I  GHTD +
Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITVNPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332
             +     N +LSL+RA +  + L K+GV++++I+   G+   +  IAS+        NR
Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318

Query: 333 RID 335
           R++
Sbjct: 319 RVE 321


>gi|88800584|ref|ZP_01116145.1| chemotaxis MotB protein, putative [Reinekea sp. MED297]
 gi|88776639|gb|EAR07853.1| chemotaxis MotB protein, putative [Reinekea sp. MED297]
          Length = 355

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 22/126 (17%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---------------VISIRGHTDASPFR 278
           T + D +++I LPE+I+      ++ A   +               +ISI+GHTD+    
Sbjct: 216 TQLEDGTTAIKLPESILFASGRADINAEGRQSLANLATALSSFPNHLISIQGHTDSQTIA 275

Query: 279 NIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANR 332
               +    NW LS  RA SA + L+K G+  D++  + G+A  R  ++  S      NR
Sbjct: 276 PATAEKYPTNWELSAARAASAVRELLKQGIPADQMQAV-GYADTRPLVEETSAQTRQQNR 334

Query: 333 RIDILV 338
           RI++++
Sbjct: 335 RIEVIL 340


>gi|319786952|ref|YP_004146427.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465464|gb|ADV27196.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 216

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIAR---DN 284
           R   +F  +S    PE   VL+ +   LA   E    V+ + G TD  P     R   DN
Sbjct: 88  RGNVLFALNSDQLQPEGRQVLRSLAAPLARYLEAGEQVLMVSGFTDDRPVHEGNRRFADN 147

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
           W LS  RA +  + L++ GV  D +   +  A   +    D    A NRR++I
Sbjct: 148 WELSAQRALTVTRALIEEGVPADSVFAAAFGAQQPVSPNDDEEGRARNRRVEI 200


>gi|126662605|ref|ZP_01733604.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
 gi|126625984|gb|EAZ96673.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
          Length = 467

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-A 260
           T++G VA+N    V  +T +      + D   T +F+   +    +TI VLQ +  +L  
Sbjct: 335 TVAGTVANNGCPEVSDDTMK-----KLNDYGKTILFNSGKASFQKQTIPVLQAMTAILKE 389

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           + T   S+ GHTD++    +   N +LS +RA +    L+++G+   R+S   GF     
Sbjct: 390 YPTAKFSLEGHTDSTGADAL---NQKLSEERAAAVKNFLVENGIDASRLSS-KGFGESMP 445

Query: 321 ----KIASDPMNSANRRIDI 336
               K A    N  NRR+++
Sbjct: 446 VDSNKTAKGKAN--NRRVEV 463


>gi|77164341|ref|YP_342866.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|254434085|ref|ZP_05047593.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani
           AFC27]
 gi|76882655|gb|ABA57336.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|207090418|gb|EDZ67689.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani
           AFC27]
          Length = 248

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  P  +  L KI EVL  ++  V+ + GHTD++      + N  LSL RA + 
Sbjct: 121 FDHDSDVLKPAFLPTLDKIAEVLKKYNKTVVHVIGHTDST---GSEKYNLDLSLRRAGNV 177

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
                + GV   R+S    G +  R   A+      NRR++I++
Sbjct: 178 AVYFERKGVPSQRLSIYGRGESEPRASNATAAGRQLNRRVEIIL 221


>gi|330752332|emb|CBL87286.1| protein with similarity to outer membrane OmpA family protein
           [uncultured Flavobacteria bacterium]
          Length = 292

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDN 284
           + ++ Q     F  +++  LP++I  L+++ + +L H    + +RGH +  P +      
Sbjct: 175 VGMVYQLKEIFFIPATAQYLPKSIKELERLKQFLLNHEVLKVQVRGHVNG-PAQTKPEFY 233

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338
             LS  RA +  Q L+ +GV E+R+ +  G ++ +++ +S         NRR++I++
Sbjct: 234 QELSDARAKAIKQFLVGNGVGEERVDE-KGMSNFQMRYSSPKTAFEAGENRRVEIII 289


>gi|254464778|ref|ZP_05078189.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206685686|gb|EDZ46168.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 613

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 22/85 (25%)

Query: 265 VISIRGHTDASPFRNIAR----DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR 319
           +I + GHTD +P   +A     DNW LS  RA S  + ++++ GV   R++  +GF  ++
Sbjct: 533 IIRVDGHTDDTPL--VAHPKFNDNWELSQGRALSVVRYMVEALGVPPSRLAA-NGFGEYQ 589

Query: 320 LKIASDPMNSA--------NRRIDI 336
                 P+NSA        NRRI++
Sbjct: 590 ------PVNSAGTPEARAQNRRIEL 608


>gi|186472558|ref|YP_001859900.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194890|gb|ACC72854.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 207

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 220 TRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD 273
           TR G L++    R T      +FD ++ +  P++ V +Q++  VLA      +++ GHTD
Sbjct: 85  TRYGTLLAAQPPRPTTFTINFLFDSATEL-APQSAVTVQQMKAVLATWPAPHLTVVGHTD 143

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332
                     + RLS+ RA +  + L+K+G+   +I   +      L   +D + N  NR
Sbjct: 144 ---LAGSPEYDDRLSMQRAQTVAKFLIKAGIPARQIETAARGKREPLVHTADGVPNQMNR 200

Query: 333 RIDILVE 339
           R+ I ++
Sbjct: 201 RVVITIQ 207


>gi|328958204|ref|YP_004375590.1| flagellar motor protein MotB [Carnobacterium sp. 17-4]
 gi|328674528|gb|AEB30574.1| flagellar motor protein MotB [Carnobacterium sp. 17-4]
          Length = 249

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58
          ++ P N   W + YADF+T+LM FF++M+ ++  D
Sbjct: 9  EEEPENHERWLLSYADFITLLMIFFIIMYSMSEMD 43


>gi|283853198|ref|ZP_06370451.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283571456|gb|EFC19463.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 245

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 177 PLSKEKILAM----KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           P+S +++ A+    + K+R+    +++       V+   ++GVL  T  +G +   I   
Sbjct: 72  PVSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGVLGATLESGTIT--ISLP 129

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRLSL 289
              +F K       E  V L+ + E L  +  E I+IRG TD  P    +R  DNW +S 
Sbjct: 130 TGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERINIRGFTDDLPPAAGSRFRDNWEVSS 189

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVE 339
            RA +  + ++  G++ +R++         L   + P + A N+R++ ++E
Sbjct: 190 LRAVAVLRYMLSLGMAPNRLTATGLADLEPLYPNTTPEHRARNQRVEFVLE 240


>gi|229592075|ref|YP_002874194.1| hypothetical protein PFLU4673 [Pseudomonas fluorescens SBW25]
 gi|229363941|emb|CAY51462.1| putative outer membrane protein [Pseudomonas fluorescens SBW25]
          Length = 271

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI- 322
           V+ I G+ D +      R+N +LS DRA S   VL+  G+ E RI ++ G+   + ++  
Sbjct: 189 VVRIEGYADNTGGE---RENLKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEAN 244

Query: 323 ASDPMNSANRRIDILVEDRQG 343
           AS+   + NRR++I+  D +G
Sbjct: 245 ASERGRAQNRRVEIVFSDAKG 265


>gi|213962352|ref|ZP_03390615.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena
           Capno]
 gi|213955018|gb|EEB66337.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena
           Capno]
          Length = 360

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 12/115 (10%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290
           T +FD   S+  P+   +L  I  ++  + +    + GHTD   +P  N+     +LS D
Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
           RA +  Q L + GVS+ R+ +  G+   R   ++D       NRR++I +++D+Q
Sbjct: 307 RADAIKQYLSRHGVSKKRL-EAKGYGQTRPIESNDTERGKEINRRVEINVIKDQQ 360


>gi|256824209|ref|YP_003148169.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Kytococcus sedentarius DSM 20547]
 gi|256687602|gb|ACV05404.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Kytococcus sedentarius DSM 20547]
          Length = 437

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA 292
           PM F  SS     E+ V   +IGE LA     + + GHTD     ++  + N RLS  RA
Sbjct: 335 PMRFPSSSDALYGESAVNAARIGEKLAGCDFDVVVVGHTD-----SVGGEVNERLSAFRA 389

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
               Q L+ +GV  DRI + +  A     IAS+        NRR++ILV
Sbjct: 390 EKIAQALVVAGVDFDRIQQSNASASQ--PIASNETEDGRAKNRRVEILV 436


>gi|54307864|ref|YP_128884.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9]
 gi|46912290|emb|CAG19082.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9]
          Length = 439

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L KI   L  +   I I GHTD  P F +    NW LSL RA +   VL        R+
Sbjct: 341 ILSKIAHTLESTNGRIMIVGHTDDKPIFTSKYPSNWHLSLARATAVANVLAMGTELRGRL 400

Query: 310 -SKISGFAHHRLKIASDPMNSANRR--IDILVEDRQG 343
             +  G A+ R    S    ++NRR  ID+L + R+ 
Sbjct: 401 WPEGQGDANPRNPNTSKANRASNRRVEIDLLYQQRRA 437


>gi|153873003|ref|ZP_02001734.1| outer membrane protein ompA [Beggiatoa sp. PS]
 gi|152070531|gb|EDN68266.1| outer membrane protein ompA [Beggiatoa sp. PS]
          Length = 301

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 9/112 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-----RDNWRLSL 289
           +F+ S++     +   LQKI  VL      ++ ++GH+DA P+R  +     R N +LS 
Sbjct: 191 VFNTSTTTLKQASTRQLQKIASVLKMVDPTMVKVKGHSDAQPWRGRSQSESKRLNLKLSQ 250

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDP-MNSANRRIDILVE 339
            RA S   VL+  G  ++ +++  G+  +  L + + P + + NRR++I V+
Sbjct: 251 QRAESVKNVLVNEGFPKN-LTQAKGYGSNDPLVLGNSPAIWAKNRRVEIEVK 301


>gi|257125214|ref|YP_003163328.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049153|gb|ACV38337.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 173

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I+   N   FD +S+    E   VL+K+   +      ISI G+TD+   +   R+   L
Sbjct: 63  IVLDANALKFDFNSATIKEEYTPVLEKLKNYIESKNHKISITGYTDSKGTKEYNRE---L 119

Query: 288 SLDRAYSAYQVLMKSGVSEDRI--SKISGFAHHRLKIASDPMNSANRRIDI 336
           SL RA S  + L++ G++ ++I  +K +G A+      ++   S NRRI+I
Sbjct: 120 SLRRAESVEEKLIELGLAPEKIIETKGNGDANPIASNDTEEGRSVNRRIEI 170


>gi|163745692|ref|ZP_02153052.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45]
 gi|161382510|gb|EDQ06919.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45]
          Length = 645

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
           VI + GHTD  P        DNW LS  RA S  + ++   G++ DR++  +GF  ++  
Sbjct: 565 VIRVDGHTDNVPLSGFGEFADNWELSQARALSVVKYMVNFLGIAPDRLAA-NGFGQYQ-P 622

Query: 322 IA---SDPMNSANRRIDI 336
           +A   ++   + NRRI++
Sbjct: 623 VAEGNTEAARAQNRRIEL 640


>gi|162453377|ref|YP_001615744.1| hypothetical protein sce5101 [Sorangium cellulosum 'So ce 56']
 gi|161163959|emb|CAN95264.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 190

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   SS PLP+  V L+ + + L  S+     I + G  D    R  A  N  LSL RA 
Sbjct: 81  FAFDSSEPLPQEHVELRALVDCLRSSSLEGARIELVGRADP---RGTAAYNQDLSLRRAA 137

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              ++L+K G+  DRI+  +  A     + + PM S   +RR+D+
Sbjct: 138 RVKEILVKEGIPADRITTRATGASE--AVGAQPMYSYGYDRRVDV 180


>gi|124005143|ref|ZP_01689985.1| outer membrane protein, putative [Microscilla marina ATCC 23134]
 gi|123989395|gb|EAY28956.1| outer membrane protein, putative [Microscilla marina ATCC 23134]
          Length = 329

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 252 LQKIGEVLA----HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +++G V+     H T  I I  HTD+   R     N RLS  RA S Y  LMK G++  
Sbjct: 238 FEELGRVVKLLKDHPTSHILIEAHTDSDGTR---LANLRLSQQRAKSVYNYLMKQGIAAQ 294

Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           R+          +   +  +N A NRR +++V
Sbjct: 295 RLQTRGAGELKPIAPNNTEINKARNRRFELIV 326


>gi|218892666|ref|YP_002441535.1| flagellar motor protein MotD [Pseudomonas aeruginosa LESB58]
 gi|218772894|emb|CAW28706.1| MotD [Pseudomonas aeruginosa LESB58]
          Length = 296

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 14/61 (22%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADF+T+L AFF+VM+ I++ ++   K + +              G+F++   P+R
Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLT-----------GVFNQ---PDR 62

Query: 93 S 93
          S
Sbjct: 63 S 63


>gi|296390172|ref|ZP_06879647.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAb1]
          Length = 296

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + +
Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 51


>gi|284040434|ref|YP_003390364.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819727|gb|ADB41565.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 537

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQR--------------NTPMFDKSSSIPLPE 247
           T+  +  D I +G   + T+      I DQ+              N   FD   S   PE
Sbjct: 385 TMRAVAKDFIAEGANIDLTQPKGYQQITDQQLKLIPIEVGSVVRLNNIFFDTGKSELRPE 444

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           +   L ++   L  + ++ I +RGHTD +    I   N +LS DRA +  +  +  G+  
Sbjct: 445 SGPELDRLVTTLNDAPKMTIEVRGHTDNTGSNEI---NAKLSQDRADAVREYFISKGIEP 501

Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
           DRI SK  G A       ++     NRR++ ++
Sbjct: 502 DRIASKGFGEAKPTASNNTEEGRQQNRRVEFVI 534


>gi|15596658|ref|NP_250152.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAO1]
 gi|107100895|ref|ZP_01364813.1| hypothetical protein PaerPA_01001925 [Pseudomonas aeruginosa
          PACS2]
 gi|116049406|ref|YP_791791.1| flagellar motor protein MotD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254234559|ref|ZP_04927882.1| MotD [Pseudomonas aeruginosa C3719]
 gi|254239810|ref|ZP_04933132.1| MotD [Pseudomonas aeruginosa 2192]
 gi|313106460|ref|ZP_07792691.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016]
 gi|9947413|gb|AAG04850.1|AE004575_9 MotD [Pseudomonas aeruginosa PAO1]
 gi|3721573|dbj|BAA33552.1| ORF2 [Pseudomonas aeruginosa]
 gi|115584627|gb|ABJ10642.1| chemotaxis protein, MotD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166490|gb|EAZ52001.1| MotD [Pseudomonas aeruginosa C3719]
 gi|126193188|gb|EAZ57251.1| MotD [Pseudomonas aeruginosa 2192]
 gi|310879193|gb|EFQ37787.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016]
          Length = 296

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + +
Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 51


>gi|222824332|ref|YP_002575906.1| flagellar motor component MotB [Campylobacter lari RM2100]
 gi|222539553|gb|ACM64654.1| flagellar motor component MotB [Campylobacter lari RM2100]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          W + YADF+++L+A F+ +W I+ ++    +A++  F
Sbjct: 16 WAVPYADFLSLLLALFIALWAISESNPAKTEALKTEF 52


>gi|332292401|ref|YP_004431010.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170487|gb|AEE19742.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 652

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD--RA 292
            FD +     P+  + L KI  +L+    + I I  HTDA      A DN+ + L   RA
Sbjct: 542 FFDLNKDYIRPDAAMELNKIVTLLSQQPSIEIRIESHTDAR-----ADDNYNMELSQRRA 596

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL------KIASDPM-NSANRRIDILVE 339
            S    L++ G++++RI    GF   +L       +  D + +  NRR + ++E
Sbjct: 597 ISTKNYLIRQGIAKERILSAQGFGETQLLNDCSNGVQCDEVQHQINRRSEFIIE 650


>gi|260574902|ref|ZP_05842904.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259022907|gb|EEW26201.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 328

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 252 LQKIGEVL-AHSTEVISIRGHTDAS-PFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           LQ + + L AH    I++ GHTDAS P   NIA     LS  RA S  QVL+ S GV   
Sbjct: 238 LQALADYLKAHPDRAIAVVGHTDASGPLAVNIA-----LSRKRAASVRQVLIDSLGVPAT 292

Query: 308 R-ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + I++  GF   R    ++   + NRR+++++   Q
Sbjct: 293 QVIAEGVGFLVPRASNLTEAGRAQNRRVEVMLTSTQ 328


>gi|254525016|ref|ZP_05137071.1| OmpA family protein [Stenotrophomonas sp. SKA14]
 gi|219722607|gb|EED41132.1| OmpA family protein [Stenotrophomonas sp. SKA14]
          Length = 212

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)

Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRLQ L + ++  L+ G V   ++ G      R GI  S++   N+           PE 
Sbjct: 60  KRLQTLEQALAGPLAAGRV--TLIDG------RIGISGSVLFALNSDQLQ-------PEG 104

Query: 249 IVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301
             +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L+ 
Sbjct: 105 QELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164

Query: 302 SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            GV  D + +   G        AS+   + NRR++I
Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNASEDGRARNRRVEI 200


>gi|260597012|ref|YP_003209583.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032]
 gi|260216189|emb|CBA29047.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032]
          Length = 424

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           MF   ++I  P+ + +++++   +      + I GHTD++P R+ A   N  LS  RA +
Sbjct: 318 MFSSGAAIVRPDRVDIIRRVAAEVRRVDGAVVIIGHTDSTPIRSGAFASNQALSEKRAEA 377

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILV 338
                +  G++ ++I+     A     IAS   +   S NRR++I V
Sbjct: 378 VAAYFLAQGIAPEKITPKG--AGDTQPIASNHDEKGRSQNRRVEIFV 422


>gi|159185884|ref|NP_356875.2| hypothetical protein Atu3746 [Agrobacterium tumefaciens str. C58]
 gi|159141018|gb|AAK89660.2| flagellar motor protein [Agrobacterium tumefaciens str. C58]
          Length = 261

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+ A    V+ + GHTD        R  DNW LS  RA S  + L+  GV  +R+   +G
Sbjct: 174 EIPAEINWVLRVDGHTDNVQLTGSGRYRDNWELSSARATSVVKFLISKGVPANRLVA-AG 232

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
           F  ++     D       NRRI++ + +R
Sbjct: 233 FGEYQPIAEGDSPEARQQNRRIELKLTER 261


>gi|330991015|ref|ZP_08314969.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1]
 gi|329761836|gb|EGG78326.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1]
          Length = 320

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323
           ++ + GH D  P  +    NW LS  RA +  ++L+  G+    ++  +GF+ ++ L   
Sbjct: 243 ILRVDGHADRQPIHSAFPSNWELSSARAITVVKLLIAEGIDPHHLAA-TGFSDYQPLDKG 301

Query: 324 SDPMNSA-NRRIDILVEDR 341
           + P   A NRRI+  + DR
Sbjct: 302 TTPEAFARNRRIEFRLTDR 320


>gi|256830501|ref|YP_003159229.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579677|gb|ACU90813.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 260

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 15/106 (14%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTD-----------ASPFRNIARDNWRLSLDRAYSAYQVL 299
           +L ++  V+  S+  + + GHT            A P+  +   +W LSL R  + Y+  
Sbjct: 119 LLDRLRPVVMESSHPLGLSGHTSEGMDEFGPDYLAKPWIKVDF-SWELSLARVMAVYKYF 177

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQG 343
           +++GV  +++ ++  F   R ++ ++       NRR++I ++ R G
Sbjct: 178 IETGVEPEKL-RLEAFGRFRPRLTTEAPGERQTNRRVEITLDRRVG 222


>gi|88811500|ref|ZP_01126755.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231]
 gi|88791389|gb|EAR22501.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL K+   L      + + GHTD  P R++  +DN+ LS  RA +A + L +      R+
Sbjct: 338 VLDKVAGALKQVPGRVLVVGHTDDVPIRSLRFKDNYELSRQRALNAAERLKERLDDPGRV 397

Query: 310 SKIS-GFAHHRLKIASDPMNSA-NRRIDIL 337
           S +  G    R +    P N A NRRI+I+
Sbjct: 398 SYLGVGPDQPRYRPVDTPENRARNRRIEII 427


>gi|146307821|ref|YP_001188286.1| flagellar motor protein MotD [Pseudomonas mendocina ymp]
 gi|145576022|gb|ABP85554.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 269

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + YADF+T+L AFF+VM+ I++ ++   K + +
Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 50


>gi|104782672|ref|YP_609170.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95111659|emb|CAK16380.1| putative outer membrane protein; OmpA family [Pseudomonas
           entomophila L48]
          Length = 269

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI- 322
           V+ I G+TD++       DN +LS DRA +   +L+  GV E RI ++ G+   + ++  
Sbjct: 187 VVRIEGYTDST---GNPEDNLKLSRDRAQAVADMLVDLGVDEKRI-QVEGYGDQYPVEAN 242

Query: 323 ASDPMNSANRRIDILVEDRQG 343
           AS+   + NRR++I+  D +G
Sbjct: 243 ASERGRAQNRRVEIVFSDDKG 263


>gi|330828822|ref|YP_004391774.1| OmpA family protein [Aeromonas veronii B565]
 gi|328803958|gb|AEB49157.1| OmpA family protein [Aeromonas veronii B565]
          Length = 306

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           L P+S   +L  +    L  L  ++  ++  LV   IVK    E   T      ++  + 
Sbjct: 98  LAPISGVPVL--QDGATLAKLDMQLQQSMGSLVDAGIVKLTQDENWLT------VELSSG 149

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAY 293
            +F   S+   P    V+  +  +L      + +RG+TD     N I R NW LS  RA 
Sbjct: 150 LLFGSGSAFLGPNAAPVINTLSSILKPVDNYVRVRGYTDNQQINNEIYRSNWALSAARAE 209

Query: 294 SAYQVLMKSGVSEDRIS 310
           +    L+  G++  R++
Sbjct: 210 AVLNGLIADGIAPQRLA 226


>gi|313895933|ref|ZP_07829487.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975358|gb|EFR40819.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 310

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E +  G++I + ++    +FD  S+    +   ++  I  +L    E ++I GHTD 
Sbjct: 117 VSTELSEDGLMIRLKEKA---LFDSGSAALQGQAEQIVPVIAALLTSLPERVTISGHTDN 173

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
            P        NW LS  RA S  + LM  +  ++  R S + G++ +R  IAS+      
Sbjct: 174 VPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-GYSEYR-PIASNDTEEGR 231

Query: 331 --NRRIDILV 338
             NRR+++ +
Sbjct: 232 AQNRRVEVFI 241


>gi|149370978|ref|ZP_01890573.1| outer membrane protein, OmpA family [unidentified eubacterium
           SCB49]
 gi|149355764|gb|EDM44322.1| outer membrane protein, OmpA family [unidentified eubacterium
           SCB49]
          Length = 323

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 27/173 (15%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           L  E I+A K + ++  L   IS+ L+    +    G+  E     + +S+    N  +F
Sbjct: 153 LELEGIIAAK-EAQMDALKNAISAALTSFEGN----GLTVEQREGKVYVSM---ENKLLF 204

Query: 238 DKSS---SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDR 291
           +  S   +    E +V L   G+VL  + E+ + I GHTD  P+  + + +DNW LS  R
Sbjct: 205 ESGSWDVNSRGREAVVAL---GKVLGDNKEIAVLIEGHTDNVPYGEKGLIKDNWDLSTKR 261

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------SANRRIDILV 338
           A +   +L ++    + I K +  A  R + A    N      + NRRI++++
Sbjct: 262 ATAIVAILTEN----NNIPKENLTAAGRGEYAPIASNNTSEGKAKNRRIEVVL 310


>gi|37676652|ref|NP_937048.1| hypothetical protein VVA0992 [Vibrio vulnificus YJ016]
 gi|37201195|dbj|BAC97018.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus
           YJ016]
          Length = 442

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294
           +F+  S+  +     V+ K+   L  +   I + GHTD +P F +    NW LSL RA +
Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339
               L  +G    R+    G    R  ++++ +   S NRR  ID+LV+
Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGDARPLVSNETVEGRSINRRVEIDLLVQ 430


>gi|325107821|ref|YP_004268889.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324968089|gb|ADY58867.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 280

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 270 GHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--AS 324
           GHTD  P    R     NW LS +RA S    L  SG+SE R+   +G++ ++  +   +
Sbjct: 192 GHTDDQPIASARGTHPTNWHLSTNRANSVVLALKNSGISEHRMGA-AGYSLNQPLVPNTN 250

Query: 325 DPMNSANRRIDILV 338
           D     NRR++I V
Sbjct: 251 DHSRQRNRRVEIFV 264


>gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1]
 gi|300076456|gb|ADJ65855.1| OmpA family protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   +   PE   VL +    L  +    ++I GHTD     N   D  N  LSL RA 
Sbjct: 112 FDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTD-----NTGSDAINDPLSLQRAS 166

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                L   GV+ +R S I G   H   +A  SD   + NRR++I V +
Sbjct: 167 RTRDYLSSRGVAANRFS-IQGRGSHEPLVANTSDANRARNRRVEIFVAE 214


>gi|307728928|ref|YP_003906152.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583463|gb|ADN56861.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 217

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    P    VL ++ + L  + EVI+ + GHTD++        N  LS++RA S 
Sbjct: 108 FDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHTDST---GQPAYNQTLSVNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
              L + GV+  R+S   G   ++  IA   ++   +ANRR++I +
Sbjct: 165 VSFLEQRGVAAQRLSA-QGMGQNQ-PIADNNTEAGRAANRRVEIYL 208


>gi|315123150|ref|YP_004065156.1| hypothetical protein PSM_B0207 [Pseudoalteromonas sp. SM9913]
 gi|315016910|gb|ADT70247.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 25/126 (19%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           GI I+I  +    +F +  S  LP    +L+K+   L  +   + I GHTD  P   I+ 
Sbjct: 310 GIRITINSEN---LFKQGDSQLLPSFQPILEKLALSLEGTKGRVLITGHTDDLP---IST 363

Query: 283 D----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSA 330
           D    NW LSL RA     ++ KS       + +SG      K A++P+         S 
Sbjct: 364 DKYPSNWHLSLARATQVANLMAKS-------TNLSGRLWPEGKGAAEPIASNSDSASRSL 416

Query: 331 NRRIDI 336
           NRRI+I
Sbjct: 417 NRRIEI 422


>gi|303239756|ref|ZP_07326280.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592693|gb|EFL62417.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
          Length = 277

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +W + Y+D MT+L+A F+VM+ ++ TD+   K + + F
Sbjct: 15 TWLLPYSDMMTLLLALFIVMFAMSKTDNAKMKEMSEQF 52


>gi|89053531|ref|YP_508982.1| hypothetical protein Jann_1040 [Jannaschia sp. CCS1]
 gi|88863080|gb|ABD53957.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 799

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           +I + GHTD    R  A   +NW LS  RA +    + +  G+   R++  +GF  HR  
Sbjct: 719 IIRVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAA-TGFGEHR-P 776

Query: 322 IA---SDPMNSANRRIDILVEDR 341
           IA   +D   +ANRRI++ + +R
Sbjct: 777 IAPNDTDEGQAANRRIELKLTER 799


>gi|332293247|ref|YP_004431856.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171333|gb|AEE20588.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 275

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 217 FETTRTGILISIIDQRNT-PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
            E   T +L  +  +  T  M   SS I L + +  L+       + T  I I GH   S
Sbjct: 154 LEINETTVLFGVFFKGGTDKMLGSSSVITLRKVVRFLE------GYPTRKILITGHICCS 207

Query: 276 PFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           P R    D +        LS DR    Y  L+K+G+S  R+        +R K  ++P++
Sbjct: 208 PDREPQLDGYNNRTGSMTLSEDRGKMVYDYLIKNGISAGRLK-------YRGKAYTEPLD 260

Query: 329 ---SANRRIDILV 338
              + NRR+++ +
Sbjct: 261 WEETKNRRVEMTI 273


>gi|307718975|ref|YP_003874507.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM
           6192]
 gi|306532700|gb|ADN02234.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM
           6192]
          Length = 395

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +K+   +   + D  +     ET+  G+ I +        F   S++ LPE    L+KI 
Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSALLLPEEQEKLRKIA 310

Query: 257 EVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           ++L+   E  + + GHT    +P   +A     LS++RA +    LMK GV       I 
Sbjct: 311 QILSRYPERDLLVEGHTALAGTPEGRLA-----LSIERAKAVADFLMKLGVRRPEQIVIR 365

Query: 314 GFAHHRLKIA---SDPMNSANRRIDILV 338
           G+   R  IA   ++   S NRR++I +
Sbjct: 366 GYGATR-PIADNTTEEGRSRNRRVEITI 392


>gi|323525137|ref|YP_004227290.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323382139|gb|ADX54230.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 217

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    P    VL ++ + L  + EVI+ + GHTD++        N  LS++RA S 
Sbjct: 108 FDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHTDST---GQPAYNQTLSVNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
              L + GV+  R+S   G   ++  IA   ++   +ANRR++I +
Sbjct: 165 VGFLEQRGVAPQRLSA-QGMGQNQ-PIADNSTEAGRAANRRVEIYL 208


>gi|320529440|ref|ZP_08030528.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399]
 gi|320138406|gb|EFW30300.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399]
          Length = 310

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E +  G++I + ++    +FD  S+    +   ++  I  +L    E ++I GHTD 
Sbjct: 117 VSTELSEDGLMIRLKEKA---LFDSGSAALQGQAEQIVPVIAALLTSLPERVTISGHTDN 173

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
            P        NW LS  RA S  + LM  +  ++  R S + G++ +R  IAS+      
Sbjct: 174 VPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-GYSEYR-PIASNDTEEGR 231

Query: 331 --NRRIDILV 338
             NRR+++ +
Sbjct: 232 AQNRRVEVFI 241


>gi|146282858|ref|YP_001173011.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
 gi|145571063|gb|ABP80169.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+ ++   LA +   I + GHTD  P +      NW LS  RA S  + L  +G+   R+
Sbjct: 148 VIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASSVVRYLQLAGIEATRL 207

Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           S  +G+A  R     A +   ++NRR++++++
Sbjct: 208 SA-TGYADTRPLADNADERGRASNRRVELVMQ 238


>gi|327481195|gb|AEA84505.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166]
          Length = 244

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+ ++   LA +   I + GHTD  P +      NW LS  RA S  + L  +G+   R+
Sbjct: 148 VIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASSVVRYLQLAGIEATRL 207

Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           S  +G+A  R     A +   ++NRR++++++
Sbjct: 208 SA-TGYADTRPLADNADERGRASNRRVELVMQ 238


>gi|585710|sp|P37726|PORF_PSEFL RecName: Full=Outer membrane porin F; AltName: Full=Root adhesin;
           Flags: Precursor
 gi|5668610|gb|AAD45981.1| OprF [Pseudomonas fluorescens]
          Length = 326

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     I  D  N +LS  RA 
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----IGPDAYNQKLSQRRAD 275

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
              QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 276 RVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|296329419|ref|ZP_06871912.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153464|gb|EFG94289.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 153

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284
           ++D+R+    FDKS+    P+   +L  I E +  +   I+I GHTD+     I  +  N
Sbjct: 63  VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 115

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           ++LS  RA S    L++ G+SEDRI  I      +
Sbjct: 116 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ 150


>gi|325288156|ref|YP_004263946.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324323610|gb|ADY31075.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 638

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           P   + LQK+  VL    +  I I  HTD+   R     N  LS +RA S  + L+  GV
Sbjct: 538 PRAEIELQKVLFVLKEFPKTKIKIESHTDS---RGKDAYNLELSDNRAKSTRRYLVSKGV 594

Query: 305 SEDRISKISGFAHHRLK-------IASDPMNSANRRIDILV 338
             DRI   +GF   +LK         S+  +  NRR D ++
Sbjct: 595 DIDRIESANGFGELKLKNKCSNGVKCSEQEHLVNRRSDFII 635


>gi|126734135|ref|ZP_01749882.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2]
 gi|126717001|gb|EBA13865.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2]
          Length = 536

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           VI + GHTD  P  + +R  DNW LS  RA S  + + +  G+   R++  +GF   +  
Sbjct: 456 VIRVDGHTDNVPIGSNSRFADNWELSQARALSVVRFMSEDLGIDPRRLAA-NGFGEFQ-- 512

Query: 322 IASDPMNSA-----NRRIDILVEDR 341
              +P+N+A     NRRI++ + +R
Sbjct: 513 -PLNPLNTAEARAQNRRIELKLTER 536


>gi|320158759|ref|YP_004191137.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Vibrio
           vulnificus MO6-24/O]
 gi|319934071|gb|ADV88934.1| outer membrane protein ImpK/VasF OmpA/MotB domain [Vibrio
           vulnificus MO6-24/O]
          Length = 442

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294
           +F+  S+  +     V+ K+   L  +   I + GHTD +P F +    NW LSL RA +
Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339
               L  +G    R+    G    R  ++++     S NRR  ID+LV+
Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGEARPLVSNETAEGRSINRRVEIDLLVQ 430


>gi|254474819|ref|ZP_05088205.1| flagellar motor protein [Ruegeria sp. R11]
 gi|214029062|gb|EEB69897.1| flagellar motor protein [Ruegeria sp. R11]
          Length = 655

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           +I + GHTD +P     +  DNW LS  RA S  + ++++ G+  +R+S  +GF  ++  
Sbjct: 575 IIRVDGHTDDTPLGAHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631

Query: 322 IASDPMNSA--------NRRIDILVEDR 341
               P+N A        NRRI++   +R
Sbjct: 632 ----PVNPAETPEARAQNRRIELKFTER 655


>gi|159045480|ref|YP_001534274.1| hypothetical protein Dshi_2940 [Dinoroseobacter shibae DFL 12]
 gi|157913240|gb|ABV94673.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12]
          Length = 648

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-L 320
           V+ + GHTD  P     +  DNW LS  RA S  + L++  G+  DR++  +GF  ++ +
Sbjct: 568 VLRVDGHTDNVPVTGGGKYADNWELSQGRALSVARFLIEDQGIPPDRLAP-TGFGEYQPV 626

Query: 321 KIASDPMNSA-NRRIDI 336
            +   P   A NRRI++
Sbjct: 627 SLEDTPEGRALNRRIEL 643


>gi|283853398|ref|ZP_06370644.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283571211|gb|EFC19225.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 301

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297
           KS  +PL      L+ I   L+ +   +++ GHTD  P  + +   NW LS  RA    +
Sbjct: 198 KSGGLPL------LRDIAATLSGTPYRVTVEGHTDNRPIESWLYPSNWELSSARASRVAR 251

Query: 298 VLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-------NRRIDILV 338
           +L+  GV    + ++ G A  + +   +DP   +       NRR+ ILV
Sbjct: 252 LLIDGGVPAGHM-RVEGLADTQPVAPNTDPAGRSIAENQARNRRVVILV 299


>gi|325294742|ref|YP_004281256.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065190|gb|ADY73197.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 255

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHT---DASPFRNIARDNWRL 287
           N  +F  +S    P+    L K+ E++        + I GHT   + + +     D+W L
Sbjct: 107 NKVLFKPNSLELTPKAKEALDKVAEIIKKLPGNYQVRIEGHTSIEEPTKYLPYIHDDWDL 166

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVE 339
           S+ RA +  + L+  GV+  +I  + G+ + R L    +P+  A NRR++I +E
Sbjct: 167 SIRRATTVAKYLVSRGVNPKKIIAV-GYGNTRPLYTWKNPILQARNRRVEIYLE 219


>gi|323697841|ref|ZP_08109753.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457773|gb|EGB13638.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 254

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           + M+ K  +++L  K+    +G+ AD    GV+F T+            +  +F   ++ 
Sbjct: 104 VVMRIKSMVENLDNKLKEG-AGVNADR--DGVVFRTS------------SAALFQPFTAE 148

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P+   +L  + +VL      + +RGHTD  P        NW LS  RA  A   ++  
Sbjct: 149 LRPDATQILDGVIKVLKDYKLNLVVRGHTDDRPIHTAKYPSNWELSAARAAVALDYIVNK 208

Query: 303 GVSEDRISKISGFAHHRLKIASD 325
           G  E   +K  G+A  R ++ +D
Sbjct: 209 GGIEINRAKAVGYADTRPEVPND 231


>gi|88798977|ref|ZP_01114558.1| OmpA/MotB [Reinekea sp. MED297]
 gi|88778204|gb|EAR09398.1| OmpA/MotB [Reinekea sp. MED297]
          Length = 300

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPF-RNIARD---NWRLSLDRAYSAYQVLMKSGV 304
            VL  + EVL  H    + + GH DA P   ++A+    NW LS  RA      L+  GV
Sbjct: 205 TVLTSLSEVLKQHPDRRVQVIGHADARPIVSDLAQTYPTNWELSSARASRVVTFLIDQGV 264

Query: 305 SEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339
           S+ R+      A+  ++  ++  + S NRRI++ ++
Sbjct: 265 SDHRLLASGRAANQPVRDGANEEDWSVNRRIEVQIQ 300


>gi|120553254|ref|YP_957605.1| flagellar motor protein MotB [Marinobacter aquaeolei VT8]
 gi|120323103|gb|ABM17418.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 305

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS-LDRAYSAYQVLMKSGVSEDR 308
           +L  + EVLA     ++I GHTD  P R      NW LS    A  A  +L +  V+ DR
Sbjct: 173 LLMDMAEVLADMPGDLAIEGHTDNVPIRTERFYSNWDLSAARAAAVANVLLAREQVTPDR 232

Query: 309 ISKISGFAHHRLKIA-SDPMNSA-NRRIDILVE 339
           I +++G A    ++  + P N A NRR++I+++
Sbjct: 233 I-RVTGLADTEPRVPNTSPENRAKNRRVEIVID 264


>gi|120437695|ref|YP_863381.1| thrombospondin repeat-containing OmpA/MotB family outer membrane
           protein [Gramella forsetii KT0803]
 gi|117579845|emb|CAL68314.1| OmpA/MotB family outer membrane protein containing thrombospondin 3
           repeats [Gramella forsetii KT0803]
          Length = 472

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD + +   PE+   LQ I +++  +ST +  I GHTD+S   +    N +LS +RA
Sbjct: 355 TVLFDLNKATIRPESEEALQSIHDIMHEYSTTIFHIEGHTDSSGSDSY---NMKLSKERA 411

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVE 339
            S    L ++G+   R++   G+   +  IA++        NRR++I ++
Sbjct: 412 ASVATWLEQNGIPAKRLTS-EGYGETQ-PIATNSTAKGRQDNRRVEISLD 459


>gi|218550833|ref|YP_002384624.1| outer membrane lipoprotein [Escherichia fergusonii ATCC 35469]
 gi|218358374|emb|CAQ91021.1| putative outer membrane lipoprotien [Escherichia fergusonii ATCC
           35469]
 gi|324111886|gb|EGC05866.1| OmpA family protein [Escherichia fergusonii B253]
 gi|325499107|gb|EGC96966.1| outer membrane lipoprotein [Escherichia fergusonii ECD227]
          Length = 219

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD +S+   P     L  +  VL  +    +++ G
Sbjct: 92  MRGTGVSVTRSGDNI-ILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEYPKTAVNVLG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
           +TD++   ++   N RLS  RA S    L+  GV+ +RI ++  G A+     ++    +
Sbjct: 151 YTDSTGGYDL---NMRLSQQRADSVASALITQGVAANRINTRGMGPANPIASNSTAEGKA 207

Query: 330 ANRRIDI 336
            NRR++I
Sbjct: 208 QNRRVEI 214


>gi|298529977|ref|ZP_07017379.1| peptidoglycan-associated lipoprotein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509351|gb|EFI33255.1| peptidoglycan-associated lipoprotein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 200

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            LQKI E +    E+ + I GHTD    R  A  N  L   RA +AY+ L+  GVS DR+
Sbjct: 112 ALQKISEHMKRFDELRLVIEGHTDE---RGTAEYNLALGERRARAAYEFLVLLGVSSDRL 168

Query: 310 SKIS 313
             IS
Sbjct: 169 QIIS 172


>gi|289665938|ref|ZP_06487519.1| OmpA family membrane protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 438

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R+++ +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLSFKDNFALSARRAESVGAVL-AAGLRDRRR 402

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG    +  IA  P      + NRR++IL+
Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434


>gi|87121845|ref|ZP_01077731.1| flagellar motor aparatus [Marinomonas sp. MED121]
 gi|86162874|gb|EAQ64153.1| flagellar motor aparatus [Marinomonas sp. MED121]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           I+I+GHTD  P R +    NW LS  RA +  +  ++ G+   R++  +G+A
Sbjct: 181 INIKGHTDNIPIRTVKFPSNWELSAIRATTVLRYFLEEGIGAQRMTA-TGYA 231


>gi|330807890|ref|YP_004352352.1| hypothetical protein PSEBR_a1170 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375998|gb|AEA67348.1| Conserved hypothetical protein; putative outer membrane protein,
           putative OmpA family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 370

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP T+    ++ ++L A     + I GH D S     A  N +LS +RA S   +   SG
Sbjct: 182 LPVTLGPFTRVAKILEADPKTAVLILGHADTS---GAAPANLKLSQERAQSVAAIFRLSG 238

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  DR+  + G      + A+D +   + NRR+++LV
Sbjct: 239 LQRDRL-MLRGMGAVAPRAANDSVEGRALNRRVELLV 274


>gi|312963125|ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311282636|gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 229

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 256 GEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
           G+VL   H+  +   R  TD   F  +  DN+ LS  RA  A ++L+++    + R   +
Sbjct: 134 GQVLVEGHTDNLPVSRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQARRVVV 193

Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336
           +G+   R K   DP ++ NRR+++
Sbjct: 194 AGYGDSRPKPGIDPASALNRRVEV 217


>gi|238023638|ref|YP_002907870.1| hypothetical protein bglu_2g01470 [Burkholderia glumae BGR1]
 gi|237878303|gb|ACR30635.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 438

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS L+ D I +G L  T       S +  R   MF    S   PE   VL K+   +A  
Sbjct: 301 LSVLLKDEIARGEL--TVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARV 358

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRL 320
              + + G+TD+ P       DN  LS  RA     VL   G   +RI  I  G A    
Sbjct: 359 GGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSIGKGDAQPVA 418

Query: 321 KIASDPMNSANRRIDILV 338
             A+    S NRR+++LV
Sbjct: 419 DNATPQGRSRNRRVEVLV 436


>gi|163742880|ref|ZP_02150264.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10]
 gi|161383844|gb|EDQ08229.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10]
          Length = 655

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           +I + GHTD +P     +  DNW LS  RA S  + ++++ G+  +R+S  +GF  ++  
Sbjct: 575 IIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631

Query: 322 IASDPMNSA--------NRRIDILVEDR 341
               P+N A        NRRI++   +R
Sbjct: 632 ----PVNPAPTAVARAQNRRIELKFTER 655


>gi|153837220|ref|ZP_01989887.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|260366108|ref|ZP_05778568.1| flagellar motor protein [Vibrio parahaemolyticus K5030]
 gi|260879749|ref|ZP_05892104.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034]
 gi|260896795|ref|ZP_05905291.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466]
 gi|260903584|ref|ZP_05911979.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037]
 gi|149749483|gb|EDM60237.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|308087342|gb|EFO37037.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466]
 gi|308092264|gb|EFO41959.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034]
 gi|308109501|gb|EFO47041.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037]
 gi|308114754|gb|EFO52294.1| flagellar motor protein [Vibrio parahaemolyticus K5030]
          Length = 430

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++V     E  +  + IS+  Q    +F+  S+  +     V+ K
Sbjct: 287 IAERISMYLATEIGKDLVT---VEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 340

Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKI 312
           +   L  +   I I GHTD  P F +    NW LSL RA S  + L+ +   + R I + 
Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEG 400

Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336
            G A   ++  S+   + NRRI+I
Sbjct: 401 LGDARPLVENDSEKNRAMNRRIEI 424


>gi|302326566|gb|ADL25767.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 215

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           GI++S+ D     +FD   +    + +  L KI  +L+   +  +SI G+TD +      
Sbjct: 97  GIILSMSD----ILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGNTDNTGSEEF- 151

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
             N  LS  RA +  + L++ G++E R++   G     + IA +        NRR+D+++
Sbjct: 152 --NMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMT-MPIADNSTKEGRQKNRRVDLVI 207

Query: 339 EDR 341
            DR
Sbjct: 208 TDR 210


>gi|190574725|ref|YP_001972570.1| hypothetical protein Smlt2808 [Stenotrophomonas maltophilia K279a]
 gi|190012647|emb|CAQ46275.1| putative OmpA family membrane protein [Stenotrophomonas maltophilia
           K279a]
          Length = 212

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)

Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRLQ L + ++  L+ G V   +V G      R GI  S++   N+           PE 
Sbjct: 60  KRLQTLEQALAGPLAAGRV--TLVDG------RIGISGSVLFALNSDQLQ-------PEG 104

Query: 249 IVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301
             +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L+ 
Sbjct: 105 QELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164

Query: 302 SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            GV  D + +   G        A++   + NRR++I
Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200


>gi|325286152|ref|YP_004261942.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321606|gb|ADY29071.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 452

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAH 261
           ++G VA+N    V  E  +      + D   T +FD   SSI    T V++  I  +  +
Sbjct: 321 VAGTVANNGCPEVTEEVQK-----KLNDYARTILFDTGKSSIKAESTAVMVDIITILKEY 375

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
                ++ GHTD+     +   N +LS  RA S  + L++ G+ E R+S + G+   +  
Sbjct: 376 PNAKFTVEGHTDSVGSATL---NQKLSESRALSVKEFLVEKGIGEFRLSAV-GYGEDK-P 430

Query: 322 IASDPMNSA---NRRIDI 336
           IA++   +    NRR++I
Sbjct: 431 IATNKTRAGRKQNRRVEI 448


>gi|91975492|ref|YP_568151.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91681948|gb|ABE38250.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+   P     L+ +G+ L  S     ++ + GHTDA    +    N  LS  RA 
Sbjct: 107 FDYNSAALTPRAEPQLKSLGDALISSDLKDSIVMLAGHTDAKGGDDY---NQTLSERRAE 163

Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           S  + L+ +  +  D +  + G+   +LK  SDP+ + NRR+ I+
Sbjct: 164 SVKRYLIDRYSIRPDHLVAV-GYGKKQLKDPSDPLGAENRRVQIV 207


>gi|332716479|ref|YP_004443945.1| Flagellar motor protein [Agrobacterium sp. H13-3]
 gi|325063164|gb|ADY66854.1| Flagellar motor protein [Agrobacterium sp. H13-3]
          Length = 343

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           V+ + GHTD        R  DNW LS  RA S  + L+  GV  +R+   +GF  ++   
Sbjct: 264 VLRVDGHTDNVQLSGSGRFRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQPIA 322

Query: 323 ASDP--MNSANRRIDILVEDR 341
             D       NRRI++ + +R
Sbjct: 323 EGDTPEARQQNRRIELKLTER 343


>gi|284035326|ref|YP_003385256.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283814619|gb|ADB36457.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 399

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD+SS +  PE+   L ++  VL  S T  I IRGHTD    +     N +LS DR  + 
Sbjct: 297 FDQSSPVLRPESSTELDQLAAVLLESPTTKIEIRGHTDN---QGDFDSNVKLSRDRCQAV 353

Query: 296 YQVLMKSGVSEDRISKI 312
              L   G++++R+  +
Sbjct: 354 IDYLASKGIAKNRLKAV 370


>gi|84500108|ref|ZP_00998374.1| flagellar motor protein [Oceanicola batsensis HTCC2597]
 gi|84392042|gb|EAQ04310.1| flagellar motor protein [Oceanicola batsensis HTCC2597]
          Length = 852

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
           V+ + GHTD  P       +DNW LS  RA S  + +    G   DR++  +GF  H+  
Sbjct: 772 VLRVDGHTDDVPLSGQGEFQDNWELSQARALSVVRYMEDFLGFPPDRLAA-NGFGEHQ-P 829

Query: 322 IA---SDPMNSANRRIDI 336
           IA   S+   +ANRRI++
Sbjct: 830 IASGDSEAARAANRRIEL 847


>gi|255744684|ref|ZP_05418635.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101]
 gi|262161183|ref|ZP_06030294.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1]
 gi|262168686|ref|ZP_06036381.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27]
 gi|255737715|gb|EET93109.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101]
 gi|262022804|gb|EEY41510.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27]
 gi|262028933|gb|EEY47586.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1]
          Length = 294

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 29/149 (19%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           VA++I K +  E  +  I +  + Q      R    F + S+   P+   ++++I E++ 
Sbjct: 135 VAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAELVK 194

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                + + GHTD       + R NW LS  RA S  Q           + K+  F H R
Sbjct: 195 DIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHLR 244

Query: 320 LKIA----SDPMN--------SANRRIDI 336
           L++     + P+         + NRR++I
Sbjct: 245 LQVRGLADTQPLGPNDTEAQRATNRRVEI 273


>gi|121596298|ref|YP_988194.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|222112527|ref|YP_002554791.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|120608378|gb|ABM44118.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
 gi|221731971|gb|ACM34791.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 216

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L +  E L ++  TEV  I GHTD++    I   N  LSLDRA S    L   GV+ +R
Sbjct: 123 ILDRFAEGLRNNPNTEV-RIVGHTDSTGSDAI---NNPLSLDRAESTRNYLTARGVNGNR 178

Query: 309 ISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQG 343
           I  + G    R  +AS+  +     NRR++I V +RQG
Sbjct: 179 I-HVEGRG-SREPVASNDTSDGRARNRRVEIYVGERQG 214


>gi|332519368|ref|ZP_08395835.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045216|gb|EGI81409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 370

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+   +I +  +I  L K+   L  +  + I I GHTD      +A+ N  LSL RA S
Sbjct: 265 LFEFDKAILVNTSIEELDKLNLHLKENKNLNIEIYGHTDNI---GLAKRNQELSLQRAKS 321

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341
             + L+  G+ ++RI    GF   +  +K +S+   + NRR++  + D+
Sbjct: 322 VSEYLISKGLKKERIQWF-GFGSSKPLVKNSSEDNRAKNRRVEFKLIDK 369


>gi|213961761|ref|ZP_03390027.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213955550|gb|EEB66866.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 290

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           VL+K+ +V+ +  +    + GHTD    +    RDNW LS+ RA    +VL K  GV+ +
Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTGCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233

Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           R++      +  L    D    A NRR  I+V
Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVV 265


>gi|28900895|ref|NP_800550.1| hypothetical protein VPA1040 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809341|dbj|BAC62383.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 433

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++V     E  +  + IS+  Q    +F+  S+  +     V+ K
Sbjct: 290 IAERISMYLATEIGKDLVT---VEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 343

Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKI 312
           +   L  +   I I GHTD  P F +    NW LSL RA S  + L+ +   + R I + 
Sbjct: 344 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEG 403

Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336
            G A   ++  S+   + NRRI+I
Sbjct: 404 LGDARPLVENDSEKNRAMNRRIEI 427


>gi|229090688|ref|ZP_04221921.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|228692630|gb|EEL46356.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
          Length = 126

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
           TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD+ P  N  
Sbjct: 8   TGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDK 64

Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338
              NW LS  RA +    L++    +D+     G+A  +  + +D P N   NRR+ I +
Sbjct: 65  FPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 124

Query: 339 ED 340
           ++
Sbjct: 125 KE 126


>gi|315223432|ref|ZP_07865289.1| OmpA family protein [Capnocytophaga ochracea F0287]
 gi|314946605|gb|EFS98596.1| OmpA family protein [Capnocytophaga ochracea F0287]
          Length = 290

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           VL+K+ +V+ +  +    + GHTD    + +  RDNW LS+ RA    +VL K  GV+ +
Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233

Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           R++      +  L    D    A NRR  I+V
Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVV 265


>gi|256028784|ref|ZP_05442618.1| Outer membrane protein [Fusobacterium sp. D11]
          Length = 191

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           ++D+R+   FD   SI   +   +L+ I E +  +   I+I GHTD+         N+ L
Sbjct: 64  VLDERSLN-FDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDSIGSNQY---NFGL 119

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343
           S  RA +    L++ G++EDRI  I      +  IA++      + NRR++  +  R+ 
Sbjct: 120 SRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQREA 177


>gi|83593142|ref|YP_426894.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83576056|gb|ABC22607.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 21/175 (12%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +E I + +  K +++L ++    +  L  +++V        + G++I      ++  ++ 
Sbjct: 59  QESIGSREVTKPIEELRQQTGDVIKSLQVEDVVG---LGQDQQGLVIEFA---SSAFYEP 112

Query: 240 SSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294
            S+   P  I VL+++   L    +    I I+GHTD  P  N A+   NW LS  RA  
Sbjct: 113 GSADIRPTAIPVLEQVIATLNEPRYQGFQIEIQGHTDDIPI-NTAQYPSNWELSGARATR 171

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA-NRRIDILVEDR 341
             + ++  GV+++R+  I+ +A    K+        + P+N   NRRI + V  R
Sbjct: 172 VLRFMLDQGVAKERVLAIA-YADVAPKVPNRTPEGQAIPLNQELNRRIAVRVFPR 225


>gi|296274015|ref|YP_003656646.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098189|gb|ADG94139.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 256

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 266 ISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I I G+TD S F++  I RD W LS  RA S  + L+K+ +   ++ K+S ++ +R K  
Sbjct: 165 IEIIGYTDRSNFKSDTIPRDGWDLSALRAISVVKELIKNRIDPAQL-KVSAYSSYRPKSE 223

Query: 324 SDPMNSANRRIDI 336
           +      NRR++I
Sbjct: 224 N---AVENRRVEI 233


>gi|163737814|ref|ZP_02145231.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis
           BS107]
 gi|161389340|gb|EDQ13692.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis
           BS107]
          Length = 655

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           +I + GHTD +P     +  DNW LS  RA S  + ++++ G+  +R+S  +GF  ++  
Sbjct: 575 IIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631

Query: 322 IASDPMNSA--------NRRIDILVEDR 341
               P+N A        NRRI++   +R
Sbjct: 632 ----PVNPAPTAVARAQNRRIELKFTER 655


>gi|109947291|ref|YP_664519.1| flagellar motor protein MotB [Helicobacter acinonychis str. Sheeba]
 gi|109714512|emb|CAJ99520.1| flagellar motor rotation protein MotB [Helicobacter acinonychis
           str. Sheeba]
          Length = 253

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV  D++S
Sbjct: 158 INVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLMQYGVDPDQLS 203


>gi|83310388|ref|YP_420652.1| hypothetical protein amb1289 [Magnetospirillum magneticum AMB-1]
 gi|82945229|dbj|BAE50093.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 333

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 16/86 (18%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           V+ + GHTD  P  +     NW LS  RA +  + L   GV  DR++  +GF   +    
Sbjct: 255 VLRVDGHTDKRPITSGKFPSNWELSTARAITVLRALAADGVPRDRLAA-AGFGEFQ---- 309

Query: 324 SDPMNSA--------NRRIDILVEDR 341
             P++S         NRRI+I  + R
Sbjct: 310 --PVDSGNTEAAYAKNRRIEIRFDQR 333


>gi|89889933|ref|ZP_01201444.1| putative outer membrane protein, ompA family [Flavobacteria
           bacterium BBFL7]
 gi|89518206|gb|EAS20862.1| putative outer membrane protein, ompA family [Flavobacteria
           bacterium BBFL7]
          Length = 457

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD   +    E+  VL  I  +L  + T   SI GHTD+      A+ N RLS  RA
Sbjct: 352 TILFDTGKATIKAESAKVLSDITAILKKYPTAKFSIDGHTDSV---GSAKLNQRLSDSRA 408

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
                 L+ +G+ E R+S + G+   R  +A +   +    NRR++I
Sbjct: 409 NEVKNYLVANGIDEFRLSSV-GYGEAR-PVADNKTKTGRAQNRRVEI 453


>gi|317153382|ref|YP_004121430.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943633|gb|ADU62684.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 254

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRN 279
           ++G+++      N+ MF + S+   P+    L+ +   + +    + I GHTD+ +P  +
Sbjct: 129 KSGVMLRF---NNSAMFQRGSAELSPQAKPALEVVIAGMENKNFNLVINGHTDSETPESD 185

Query: 280 IARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +   NW LS  RA +  + +L  S +S +R+  + G+A  +  + S   +  NR+I+  V
Sbjct: 186 LYTSNWELSAARAATCLRYILTHSDISANRMKAV-GYAGAKPIVPS--TSEENRQINRRV 242

Query: 339 E 339
           E
Sbjct: 243 E 243


>gi|319763880|ref|YP_004127817.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|330823856|ref|YP_004387159.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317118441|gb|ADV00930.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
 gi|329309228|gb|AEB83643.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 171

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD--ASPFRNIARDNWRLSLDRA 292
           +FD +S     E   +L ++G  L       + + GH D   SP       N RLSL RA
Sbjct: 67  LFDFNSDAMTGERREMLVRMGHALVGVGVRALRVEGHADDQGSP-----DYNERLSLRRA 121

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            +  QVL ++G+  +RI  I G+   R  +   S+     NRR+ ++V
Sbjct: 122 QAVAQVLAEAGIPRERID-IRGYGASRPLVIGTSEAARQENRRVALIV 168


>gi|325982315|ref|YP_004294717.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531834|gb|ADZ26555.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 277

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278
           T  G++I++    N  +F  + +      +  +QK+ + L   T+  + I GHTD +   
Sbjct: 153 TERGLVITL----NDVLFRTNMAQLEANGVRTVQKLADFLRQYTQHKVLIEGHTDNTGSH 208

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRID 335
           +    N  LS  RA +    L+ SG+S DR++   G+    L IA +        NRR++
Sbjct: 209 HY---NQELSERRANAVKMALLNSGISNDRVAS-RGYG-ETLPIAGNDTAEHRQLNRRVE 263

Query: 336 ILVEDRQG 343
           I++ D  G
Sbjct: 264 IILSDENG 271


>gi|315225274|ref|ZP_07867091.1| OmpA domain protein [Capnocytophaga ochracea F0287]
 gi|314944957|gb|EFS96989.1| OmpA domain protein [Capnocytophaga ochracea F0287]
          Length = 360

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290
           T +FD   S+  P+   +L  I  ++  + +    + GHTD   +P  N+     +LS D
Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI-LVEDRQ 342
           RA +  Q L + GVS+ R+    G+   R  I S+        NRR++I +V+D Q
Sbjct: 307 RADAIKQYLSRHGVSKKRLDA-KGYGQTR-PIESNETERGKEINRRVEINVVKDNQ 360


>gi|332521842|ref|ZP_08398291.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042514|gb|EGI78716.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 282

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 13/94 (13%)

Query: 257 EVLAHSTEVIS--------IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E+LA    VI+        + GHTD  P+    + +DNW LS+ R+ S  + L + GV  
Sbjct: 168 EILAKVATVINGKPNFEAMVEGHTDNVPYNRGGVLQDNWDLSVKRSTSIVRALQELGVKP 227

Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +++   +G   H   +++D     + NRR  I +
Sbjct: 228 EQLIA-AGRGDHLPLVSNDTAENRAINRRTKIYI 260


>gi|289766688|ref|ZP_06526066.1| outer membrane protein [Fusobacterium sp. D11]
 gi|289718243|gb|EFD82255.1| outer membrane protein [Fusobacterium sp. D11]
          Length = 180

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           ++D+R+   FD   SI   +   +L+ I E +  +   I+I GHTD+         N+ L
Sbjct: 53  VLDERSLN-FDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDSIGSNQY---NFGL 108

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343
           S  RA +    L++ G++EDRI  I      +  IA++      + NRR++  +  R+ 
Sbjct: 109 SRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQREA 166


>gi|170693231|ref|ZP_02884391.1| type IV / VI secretion system protein, DotU family [Burkholderia
           graminis C4D1M]
 gi|170141761|gb|EDT09929.1| type IV / VI secretion system protein, DotU family [Burkholderia
           graminis C4D1M]
          Length = 446

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +  LP+ I +L+++   L      + + GHTD  P  ++  +DN+ LS  RA +
Sbjct: 337 LFPSGGADLLPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 396

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDIL 337
              VL +      R+      +   +   +D P N A NRR++IL
Sbjct: 397 TLAVLAQGLDDPRRLEANGAGSSQPIATPADLPANRARNRRVEIL 441


>gi|313201307|ref|YP_004039965.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312440623|gb|ADQ84729.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 222

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S   P    VL    + L A+    ++I GHTD     N   D  N  LSL+RA 
Sbjct: 111 FDSGKSDIKPNFRPVLDSFAQSLVANPATKVTIVGHTD-----NTGTDAVNNPLSLNRAN 165

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDILVEDRQG 343
            A   L+  GV+  R +     +H  L +  SD   + NRR++I V + Q 
Sbjct: 166 HARDYLVTRGVASSRFTTEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216


>gi|83589634|ref|YP_429643.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83572548|gb|ABC19100.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287
           +D +   +FD   +   PE   +L K+  +L+     + + G+TD  P   +    NW L
Sbjct: 126 LDIKERILFDSGRADLKPEARQLLDKLSGLLSRLPNEVKVEGYTDNRPIHTVQFPTNWEL 185

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           S  RA    +  ++   +  DR   I    +H L     P + A NRR+ +L+
Sbjct: 186 STARAARVVRYFIEEHHLQPDRFMAIGYGEYHPLYPNDSPEHMAENRRVVLLL 238


>gi|77464614|ref|YP_354118.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126463454|ref|YP_001044568.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559507|ref|ZP_08413829.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|77389032|gb|ABA80217.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126105118|gb|ABN77796.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
 gi|332277219|gb|EGJ22534.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 228

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +L +    I++ GHTD++     A  N  LS+ RA S   VL+ +GV   R+S I     
Sbjct: 146 LLRYPNSTIAVVGHTDST---GAAAYNQDLSMRRAQSVAGVLIGNGVPSYRVSAIGRGED 202

Query: 318 HRLKIASDPMNSA-NRRIDILV 338
             +     P   A NRR+DI++
Sbjct: 203 QPIASNLTPEGRAQNRRVDIII 224


>gi|227115434|ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 505

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASP 276
           T   G++  + D   + MFD +S+    + +  ++KI   +    +  VI + GHTDA+ 
Sbjct: 108 TETVGLVAQVQD---SGMFDTNSAQLSTDGLRQVKKIATAMKEGDQSGVILVVGHTDAT- 163

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRID 335
               A  N RLS  RA +  +VL ++G+S  ++  + +G A      A+    +ANRR++
Sbjct: 164 --GSAEWNQRLSEQRAQNVGRVLEQAGLSAQKLYFQGAGSARPVADNATVTGRTANRRVE 221

Query: 336 IL 337
           I+
Sbjct: 222 IV 223


>gi|218679284|ref|ZP_03527181.1| flagellar motor protein MotB [Rhizobium etli CIAT 894]
          Length = 200

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            + +K+ + L  +I+  + G VA  + +G+    +  G+L+SI DQ +  MF+  S++P 
Sbjct: 137 AQEQKQAEQLQAEIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPR 195

Query: 246 PETIV 250
            E ++
Sbjct: 196 QEMVL 200


>gi|237728863|ref|ZP_04559344.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2]
 gi|226909485|gb|EEH95403.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2]
          Length = 220

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD SS+   P     L  +  VL  ++   +++ G
Sbjct: 92  MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNVLG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
            TD++  +++   N RLS  RA S    L+  GV+ +RI ++  G A+     ++    +
Sbjct: 151 FTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKA 207

Query: 330 ANRRIDILVEDRQ 342
            NRR++I +   Q
Sbjct: 208 QNRRVEITLSPIQ 220


>gi|253999219|ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985898|gb|ACT50755.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 222

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S   P    VL    + L A+    ++I GHTD     N   D  N  LSL+RA 
Sbjct: 111 FDSGKSDIKPNFRPVLDSFAQSLVANPATRVTIVGHTD-----NTGTDAVNNPLSLNRAN 165

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDILVEDRQG 343
            A   L+  GV+  R +     +H  L +  SD   + NRR++I V + Q 
Sbjct: 166 HARDYLVTRGVASSRFTTEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216


>gi|27366879|ref|NP_762406.1| flagellar motor protein [Vibrio vulnificus CMCP6]
 gi|27358446|gb|AAO07396.1|AE016809_158 Flagellar motor protein [Vibrio vulnificus CMCP6]
          Length = 442

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294
           +F+  S+  +     V+ K+   L  +   I + GHTD +P F +    NW LSL RA +
Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339
               L  +G    R+    G    R  ++++     S NRR  ID+LV+
Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGDARPLVSNETAEGRSINRRVEIDLLVQ 430


>gi|296114560|ref|ZP_06833213.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978916|gb|EFG85641.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 321

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 23/122 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287
           +F   S+   PE I  ++ +G  L    +        ++ + GH D  P       NW L
Sbjct: 207 LFPVGSADLSPEGIQEIKVLGRTLKQVAQQIPPSVPWILRVDGHADRLPIHTAFPSNWEL 266

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILVE 339
           S  RA +  ++L+  G+S   ++  +GFA  +      P+++         NRRI+  + 
Sbjct: 267 SSARAITVVKMLIADGISPRHLAA-TGFADFQ------PLDNGTTAEAFARNRRIEFRLT 319

Query: 340 DR 341
           DR
Sbjct: 320 DR 321


>gi|154252545|ref|YP_001413369.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156495|gb|ABS63712.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322
           V+ + GHTDA+P        NW LS  RA +    L++ GV ++R+   +GF  +H L  
Sbjct: 260 VLRVDGHTDANPIATAQFPSNWYLSSARAIAVVNYLVERGVPQNRLVA-AGFGQYHPLAD 318

Query: 323 ASDPM-NSANRRIDILVEDR 341
                 N  NRRI+  + +R
Sbjct: 319 GRGTAENRRNRRIEFKLTER 338


>gi|329297799|ref|ZP_08255135.1| putative outer membrane lipoprotein [Plautia stali symbiont]
          Length = 177

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G  I +++  N   FD SS+   P     L  +  VL  +    +++ G
Sbjct: 49  MRGTGVSVTRQGDNI-VLNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYPKAAVNVVG 107

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
            TD++  R +   N RLS  RA S    L+  GV+++R+ +  G       +AS+   + 
Sbjct: 108 FTDSTGTRAL---NMRLSQQRAESVASALIVQGVAQNRL-RTQGMGPDN-PVASNSTEAG 162

Query: 331 ---NRRIDI 336
              NRR++I
Sbjct: 163 KAQNRRVEI 171


>gi|312962474|ref|ZP_07776965.1| Outer membrane porin F [Pseudomonas fluorescens WH6]
 gi|311283401|gb|EFQ61991.1| Outer membrane porin F [Pseudomonas fluorescens WH6]
          Length = 326

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   ++  P +   ++ + + +A +    + + GHTD+     +  D  N +LS  RA 
Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
           +  QVL+K GV+  R++ + G+   R     A++   + NRR++  VE
Sbjct: 276 AVKQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|261417296|ref|YP_003250979.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373752|gb|ACX76497.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325429|gb|ADL24630.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 659

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 34/177 (19%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI----------LISI-IDQRNTPM- 236
           K  + D   K   T SG V D++  G L +  + G+          L  + +DQ   P+ 
Sbjct: 485 KDGIADFKDKCPGTPSGHVVDSL--GCLPDFDKDGVPDVLDKCPNTLPGVRVDQNGCPLN 542

Query: 237 -------------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282
                        F  +S+     +   L  I E++    E  + ++GHTD    +   +
Sbjct: 543 KKEDLDQLKKGINFKTASARLTKSSYGTLDDIAELMIKIPEANLEVQGHTDN---KGSEK 599

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDIL 337
            N +LS DRA +  + L+K GV++DR+ + +G+   + +   +D    A NRR++++
Sbjct: 600 RNKKLSEDRAAAVVKYLVKKGVAKDRL-RAAGYGSEKPIADNTDAAGRAQNRRVELV 655


>gi|71907729|ref|YP_285316.1| hypothetical protein Daro_2103 [Dechloromonas aromatica RCB]
 gi|71847350|gb|AAZ46846.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           Q I   L  S +++ + G TD  P R   R   DNW LS  RA +  + L+  GV    I
Sbjct: 112 QPIAAYLGASEQMLMVSGFTDDMPVRGSNRQFADNWELSAQRALTVTRTLIDDGVPASSI 171

Query: 310 SKISGFAHHRLKI-ASDPMNSANRRIDI 336
              +  A   +   A+    + NRR+++
Sbjct: 172 FAAAFGAQQPVADNAAAEGRARNRRVEM 199


>gi|153006608|ref|YP_001380933.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030181|gb|ABS27949.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 440

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP++  +L ++ +VL     + ISI GHTD+     +   N RLS  RA +    L+  G
Sbjct: 344 LPDSFPLLNQVVQVLRDFPNMQISIEGHTDSVGGEAL---NMRLSQQRAEAVLDYLISKG 400

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           VS +R+  I GF   +  IAS+   S    NRR +  +
Sbjct: 401 VSPERLEAI-GFGPTK-PIASNKTASGRARNRRTEFRI 436


>gi|319952094|ref|YP_004163361.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319420754|gb|ADV47863.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 370

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIAS 324
           + + GHTDA       + N  LS  RA +    L+KSG+S++RIS K  GF    +    
Sbjct: 284 VYLYGHTDA---MGSVKYNDDLSEKRAATVASFLVKSGLSKNRISWKGFGFKKPVVSNEK 340

Query: 325 DPMNSANRRIDILVEDRQG 343
           + +   NRR++ LV + Q 
Sbjct: 341 EDIRFKNRRVEFLVAEPQS 359


>gi|256819872|ref|YP_003141151.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581455|gb|ACU92590.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 360

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290
           T +FD   S+  P+   +L  I  ++  + +    + GHTD   +P  N+     +LS D
Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI-LVEDRQ 342
           RA +  Q L + GVS+ R+    G+   R  I S+        NRR++I +V+D Q
Sbjct: 307 RADAIKQYLSRHGVSKKRLDA-KGYGQTR-PIESNETERGKEINRRVEINVVKDNQ 360


>gi|220921404|ref|YP_002496705.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219946010|gb|ACL56402.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 213

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 251 VLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSE 306
           V++ +G  LA    ++ +I I GHTDA   +   R N  LS  RA +  Q ++++ GV  
Sbjct: 116 VVKMLGATLARPQLASSIILIVGHTDA---KGSDRVNQLLSERRAEAVKQYIVQNYGVPA 172

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRI 334
             +  + G+   RLK  ++P+  ANRR+
Sbjct: 173 GNLVAV-GYGKSRLKDPANPLAPANRRV 199


>gi|254462550|ref|ZP_05075966.1| flagellar MotB protein [Rhodobacterales bacterium HTCC2083]
 gi|206679139|gb|EDZ43626.1| flagellar MotB protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 411

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 266 ISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           + + GHTD  P  F  + RDNW L+  RA S  Q +    +  +R    + +   R    
Sbjct: 331 VVVAGHTDNVPIGFGALYRDNWDLAAARAASVVQEIEGLNLVPEREMSATSYGEARPIAD 390

Query: 324 SDPMNS--ANRRIDILVEDRQ 342
           +D       NRRI+I +E +Q
Sbjct: 391 NDTPEGREKNRRIEIEIEFKQ 411


>gi|312131420|ref|YP_003998760.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311907966|gb|ADQ18407.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 532

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 30/179 (16%)

Query: 177 PLSKEKILAMKRKKR---------LQDLAKKISSTLSGLVADNIVKGVLFETT--RTGIL 225
           P++ E  + +   KR         L  ++K I  T+ G   +  + G   ET   + G  
Sbjct: 364 PITGEYKIVLPYGKRYSIRPESDNLLGVSKSIDLTIPGQYKE--ITGQDLETAPIKAGTA 421

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I++    N   F+ + +    E+ + L ++  +L  +  + I ++GHTD     N+  DN
Sbjct: 422 ITL----NNVFFEFAKATLEKESFLELDRLIALLVKNPNMAIEVQGHTD-----NVGSDN 472

Query: 285 --WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
              RLS  RA +     ++ G++ DRI+  +GF   R  +AS+        NRR++ ++
Sbjct: 473 ANMRLSQQRADAVKAYFVEKGIATDRITS-TGFGESR-PVASNETTEGQAKNRRVEFVI 529


>gi|330752331|emb|CBL87285.1| protein with similarity to outer membrane OmpA family protein
           [uncultured Flavobacteria bacterium]
          Length = 266

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           A+    I + GH ++   RN    N  LS  RA +  + L+K G+ E R+S I GF + +
Sbjct: 186 AYPNLKILVEGHVNSPGKRN-TNTNQVLSTQRAEAVVKYLIKKGIRESRLSFI-GFGNTK 243

Query: 320 LKIASDPMN---SANRRIDILVE 339
           +   +  +      NRR++ILV+
Sbjct: 244 MIYPNTKLEYEMQFNRRVEILVQ 266


>gi|152972417|ref|YP_001337563.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206578997|ref|YP_002236080.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|238897010|ref|YP_002921755.1| putative outer membrane lipoprotein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040618|ref|ZP_06013856.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|288933077|ref|YP_003437136.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|290511871|ref|ZP_06551239.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55]
 gi|329999890|ref|ZP_08303557.1| OmpA family protein [Klebsiella sp. MS 92-3]
 gi|150957266|gb|ABR79296.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206568055|gb|ACI09831.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|238549337|dbj|BAH65688.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041982|gb|EEW43015.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|288887806|gb|ADC56124.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|289775661|gb|EFD83661.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55]
 gi|328538172|gb|EGF64327.1| OmpA family protein [Klebsiella sp. MS 92-3]
          Length = 220

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR G  I +++  N   FD +S+   P     L  +  VL  +    +++ G
Sbjct: 92  MQGTGVSVTRNGDNI-VLNMPNNVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD++  +++   N RLS  RA S    L+  GV+ +RI + +G       IAS+     
Sbjct: 151 YTDSTGSKDL---NMRLSQQRADSVASALITQGVAANRI-RTTGMGPAN-PIASNSTAEG 205

Query: 328 NSANRRIDILVEDRQ 342
            + NRR++I +   Q
Sbjct: 206 KAQNRRVEITLSPLQ 220


>gi|119476926|ref|ZP_01617207.1| ompA family protein [marine gamma proteobacterium HTCC2143]
 gi|119449733|gb|EAW30970.1| ompA family protein [marine gamma proteobacterium HTCC2143]
          Length = 213

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL+ +G VLA   E ++ + GHTD +        N RLS DRA S    LM  GV  +R+
Sbjct: 123 VLESVGLVLAKYNETMMRVTGHTDNTGGEQY---NQRLSEDRAQSVASNLMSQGVDGNRL 179

Query: 310 SKISGFAHHRLKIASDPMNSA---NRRIDILV 338
             I G +   + IA +  +S    NRR+++ +
Sbjct: 180 -YIQG-SGETMPIADNNTSSGRASNRRVELYI 209


>gi|261417272|ref|YP_003250955.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373728|gb|ACX76473.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 294

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           GI++S+ D     +FD   +    + +  L KI  +L+   +  +SI G+TD +      
Sbjct: 176 GIILSMSD----ILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGNTDNTGSEEF- 230

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
             N  LS  RA +  + L++ G++E R+ +K  G        ++      NRR+D+++ D
Sbjct: 231 --NMTLSQQRAENVMKFLVEQGIAETRLTAKGLGMTMPIADNSTKEGRQKNRRVDLVITD 288

Query: 341 R 341
           R
Sbjct: 289 R 289


>gi|347153|gb|AAC36899.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A   +  + + GHTD+     +  D  N +LS  RA 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPDTNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335
           +  QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 273 AVKQVLVKDGVAPSRITSV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|330831642|ref|YP_004394594.1| outer membrane lipoprotein [Aeromonas veronii B565]
 gi|328806778|gb|AEB51977.1| Outer membrane lipoprotein [Aeromonas veronii B565]
          Length = 218

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  + I++  N   FD SSS         L  +  V+A   +  +++ G
Sbjct: 90  LQGTGVSVTRNGNEL-ILNMPNNVTFDSSSSQLKAAGANTLSGVAMVVAEFDKTRLNVVG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++  R++   N +LS DRA +    L+  GV+  RIS         +   S     A
Sbjct: 149 HTDSTGSRDL---NMKLSRDRADAVAAQLIGQGVAGSRISTTGVGPDQPVATNSTAAGKA 205

Query: 331 -NRRIDI 336
            NRR+ I
Sbjct: 206 QNRRVTI 212


>gi|46579053|ref|YP_009861.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603363|ref|YP_967763.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46448466|gb|AAS95120.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563592|gb|ABM29336.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311232899|gb|ADP85753.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 257

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNT 234
           P ++ ++L  ++    +    +++  L  LV +   I K  +      GI + +    + 
Sbjct: 87  PTTESQVLITEKLDAAEQEQLEVARMLKELVNEQAEIAKNAIISAEEGGINLRV---NSR 143

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAY 293
            +F+  S+  LP+   V++ +  +L      + + GHT +  PF +    +W LS  RA 
Sbjct: 144 ALFEPGSARLLPDGEAVIRLVHTILLKHKYDLIVEGHTGSREPFSSQFPTHWELSAARAV 203

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDIL 337
           +  + ++  GVS  R+  + G+   R L   +D     NRR++  
Sbjct: 204 TLVRHILSLGVSPRRLKAV-GYGDTRPLVPENDDTGELNRRVEFF 247


>gi|226944060|ref|YP_002799133.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
 gi|226718987|gb|ACO78158.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
          Length = 215

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           VKG  FE  R G L+ +    ++       S+ L  T+  L ++ ++ A   EV + + G
Sbjct: 62  VKGSQFEVERRGDLLVVTAPVDSSFNPDRPSMLLVATLGPLSRVAKLAAQDREVAVLLLG 121

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNS 329
           H D+S     A    RLS +RA S   +   SG+  DR+  K  G    R   A+    S
Sbjct: 122 HGDSS---GSAELTNRLSQERAQSMAAIFRMSGLHHDRLMYKGMGSDVPRSSNANKDGRS 178

Query: 330 ANRRIDILVEDR 341
            NRR+++ +  R
Sbjct: 179 LNRRVEMYLTTR 190


>gi|189912837|ref|YP_001964392.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777513|gb|ABZ95814.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 423

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           +N+V+  L ET +   L S+  +R + +    SSIPL   +  L +      +S + + I
Sbjct: 300 ENLVQKKLEETKKIS-LDSVYFERASSVLKSESSIPLDSIVDYLHE------NSDQKMKI 352

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPM 327
            GHTD +       DN  LS +RA S  Q L+  GV  +R +++  G     ++   +  
Sbjct: 353 IGHTDLT---GTYDDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEAS 409

Query: 328 NSANRRIDILV 338
           +  NRR + ++
Sbjct: 410 SKKNRRTEFVL 420


>gi|90023231|ref|YP_529058.1| HAD family hydrolase [Saccharophagus degradans 2-40]
 gi|89952831|gb|ABD82846.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 380

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS+  PE    ++K+ + +A +   V+ I GHTD    R  A  N  LS  RA + 
Sbjct: 269 FDSNSSVVKPEYFAEIRKVADFMAQYENSVVVIEGHTDT---RGAAAYNKSLSQKRADAV 325

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334
             VL+    V++ R++ + G+   +  IA +       ANRR+
Sbjct: 326 AAVLVSEMNVAKRRVTSV-GYGEEQ-PIADESTREGLVANRRV 366


>gi|326795346|ref|YP_004313166.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326546110|gb|ADZ91330.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 254

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           ISI+GHTD  P  N  R   NW LS  RA +  +  ++ G+  +R++  +G+A     + 
Sbjct: 173 ISIKGHTDNIPI-NTTRFPSNWELSAIRATTTLRYFLEKGIPPERMTA-TGYADVIPLVP 230

Query: 324 SD-PMNSA-NRRIDILVE 339
           +D P + A NRR + +++
Sbjct: 231 NDTPEHRAQNRRAEFVLQ 248


>gi|91202869|emb|CAJ72508.1| similar to flagellar motor protein MotB [Candidatus Kuenenia
           stuttgartiensis]
          Length = 223

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 266 ISIRGHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLK 321
           + I GHTD+ P    +++   N  LS  RA S +  L K G + E RI  I+GF  +R  
Sbjct: 130 LRIDGHTDSDPIIKTKHLWDSNHHLSAARALSVFHFLTKKGNIPEQRI-HIAGFGPNR-P 187

Query: 322 IASDPMNSA---NRRIDILV 338
           IA +   +    NRR++ L+
Sbjct: 188 IAPNTTPAGKKENRRVEFLI 207


>gi|256820420|ref|YP_003141699.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582003|gb|ACU93138.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 290

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           VL+K+ +V+ +  +    + GHTD    + +  RDNW LS+ RA    +VL K  GV+ +
Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233

Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           R++      +  L    D    A NRR  I++
Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVI 265


>gi|224370727|ref|YP_002604891.1| MotB3 [Desulfobacterium autotrophicum HRM2]
 gi|223693444|gb|ACN16727.1| MotB3 [Desulfobacterium autotrophicum HRM2]
          Length = 272

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294
            FD   +   P+    L++IG +L  ++ V+++ GHTD  P        NW LS  RA  
Sbjct: 147 FFDLGKADLKPQAQWRLRQIGRILQENSFVVNVIGHTDDMPNHSEQYPTNWELSTARACR 206

Query: 295 AYQVLMKSG-VSEDRISKISGFAH-HRLKIASDPMN-SANRRIDILV 338
             + L+K   + E+R   +SG A    L+  +   N S NRR++I++
Sbjct: 207 VARFLIKEAQLPEERFF-VSGHAWLQPLRPNNTAHNRSLNRRVEIVL 252


>gi|126662535|ref|ZP_01733534.1| OmpA family protein [Flavobacteria bacterium BAL38]
 gi|126625914|gb|EAZ96603.1| OmpA family protein [Flavobacteria bacterium BAL38]
          Length = 621

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T +  IL  I  + N        +  L + + V+ +  E+      VI  + HTD+   R
Sbjct: 505 TEKEVILQPIFFEFNKSNITADGAAELDKLVAVMNEYPEM------VIFAKSHTDS---R 555

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRI 334
                N +LS  RA S  Q L+  GV+++RIS   GF     K+A    ++  ++ NRR 
Sbjct: 556 GSDSYNIKLSDRRAKSTVQYLISKGVAKERISG-QGFGESEPKVACKSCTEEEHAQNRRS 614

Query: 335 DILV 338
           + L+
Sbjct: 615 EFLI 618


>gi|120436663|ref|YP_862349.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578813|emb|CAL67282.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 281

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 37/180 (20%)

Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVAD--------NIVKGVLFETTRTGI 224
           KEK LA++    +QD   K       + ++L G + D        N+ KGV++       
Sbjct: 95  KEKDLAIRS---MQDAMNKKDSVTLALVTSLKGALGDLSDEDIEINVEKGVVY------- 144

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIAR 282
            +SI D+    +FD       P    VL K+  V+ +   +   + GHTD      ++  
Sbjct: 145 -VSISDK---LLFDSGRYNIKPRAKEVLGKVATVVKNKPNIEFMVEGHTDDQAISTSMFE 200

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338
           DNW LS+ RA S  +VL    G+   R++  +G +++ + +AS+      + NRR  I+V
Sbjct: 201 DNWDLSVKRATSVVRVLQDDFGIEPARMTA-AGRSYY-IPVASNETAEGRAKNRRTRIVV 258


>gi|86359723|ref|YP_471614.1| hypothetical protein RHE_PA00018 [Rhizobium etli CFN 42]
 gi|86283825|gb|ABC92887.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 572

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +++   S PLP  +VV+ +I + +A +     + G+    P R +A    + S+    +A
Sbjct: 246 LYEDVDSSPLPRQMVVMDRISQRMAKAKSGPVVHGYMGFDPLREVAFRKGKSSVSSLATA 305

Query: 296 YQVLMKSGVSEDRISKISGF 315
           +  LMK G    ++    GF
Sbjct: 306 HSALMKHGFIGIKLYPPMGF 325


>gi|332882653|ref|ZP_08450265.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679453|gb|EGJ52438.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 290

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 39/218 (17%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N+QQ  H   +LT  ++KG +     +LEKS+            +EK L +K    L+D 
Sbjct: 72  NNQQLIHNMGNLTTLTQKGAE-----NLEKSLES---------LREKDLTIKN---LRDA 114

Query: 196 AKKISSTLSGLVADNIVKGVL---------FETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +  S    LV    +KGVL          +  +  + I+I D+    +F   S     
Sbjct: 115 VTRRDSVNLALVQS--LKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTISK 169

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-G 303
               VL+K+ +V+ +  +    + GHTD    + +  RDNW LS+ RA    +VL    G
Sbjct: 170 NAKNVLEKVAKVVKNKPDFEFMVEGHTDDVRIKKDCIRDNWDLSVMRATEIVRVLQNDFG 229

Query: 304 VSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338
           ++ +R++  +G +++ + +AS+      + NRR  I+V
Sbjct: 230 IAPERMTA-AGRSYY-VPVASNTTAEGRAQNRRTRIVV 265


>gi|115376920|ref|ZP_01464141.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310825376|ref|YP_003957734.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366099|gb|EAU65113.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398448|gb|ADO75907.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 374

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           LP     L ++ E L  +   ++I GHTDA   +   R N  LS  RA      L+  GV
Sbjct: 266 LPSARSKLSEVAEALKPTHNRLTIEGHTDA---QGADRFNEDLSFRRAERVRNFLVSQGV 322

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVE 339
           + +R+ ++ G   +R  +AS+        NRR++I+++
Sbjct: 323 AANRV-EVRGLGEYR-PVASNSTAEGRANNRRVEIILQ 358


>gi|302339235|ref|YP_003804441.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636420|gb|ADK81847.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 340

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +T  F   S+   PE+   L +I  +L      + I GHT     R      + LSL RA
Sbjct: 236 STLSFKPDSAELTPESGEELSRIASILKKKRIEVEIAGHTADVGDRA---SQYTLSLQRA 292

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            S  + L+  GV E R+S + G+   R   ++D     + NRR++ LV
Sbjct: 293 ESVKRTLVSLGVKERRLS-VKGYGGSRPIASNDSQEGRAQNRRVEFLV 339


>gi|183222805|ref|YP_001840801.1| hypothetical protein LEPBI_I3466 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167781227|gb|ABZ99525.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 461

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           +N+V+  L ET +   L S+  +R + +    SSIPL   +  L +      +S + + I
Sbjct: 338 ENLVQKKLEETKKIS-LDSVYFERASSVLKSESSIPLDSIVDYLHE------NSDQKMKI 390

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPM 327
            GHTD +       DN  LS +RA S  Q L+  GV  +R +++  G     ++   +  
Sbjct: 391 IGHTDLT---GTYDDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEAS 447

Query: 328 NSANRRIDILV 338
           +  NRR + ++
Sbjct: 448 SKKNRRTEFVL 458


>gi|325927851|ref|ZP_08189076.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
 gi|325541841|gb|EGD13358.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
          Length = 368

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           MF   S+    +   +L+++   L      + + GHTD  P R++  +DN+ LS  RA S
Sbjct: 259 MFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQS 318

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338
              VL  +G+ + R  + SG A     IA  P      + NRR++IL+
Sbjct: 319 VGAVL-AAGLRDPRRVQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 364


>gi|86132374|ref|ZP_01050968.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85816935|gb|EAQ38119.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 650

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 186 MKRKKRLQDLAKKISST--LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++  K     A+ I+ T  +SG V +++   +L +  + G  ++ I + N   FD     
Sbjct: 489 IRGAKETYSGAEAITKTPDVSGTVTNDLELSLLQKPIKVGDDLAKILELNPIYFDFDRFN 548

Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLD--RAYSAYQVLM 300
             P+  + L+K+  V+  +   VI +R HTD+        D++ LSL   RA S    ++
Sbjct: 549 IRPDAALELEKVLAVMREYPNMVIDVRSHTDSR-----GNDSYNLSLSDKRAKSTVNYII 603

Query: 301 KSGVSEDRISKISGFAHHRLK-------IASDPMNSANRRIDILV 338
             G+S  RIS   G+   +L          S+  +  NRR + +V
Sbjct: 604 AEGISSSRISG-RGYGETQLTNECSNGVQCSEEAHQLNRRSEFIV 647


>gi|78047693|ref|YP_363868.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78036123|emb|CAJ23814.1| OmpA family membrane protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 438

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRR 402

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG A     IA  P      + NRR++IL+
Sbjct: 403 VQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 434


>gi|150024426|ref|YP_001295252.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|150025241|ref|YP_001296067.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770967|emb|CAL42434.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771782|emb|CAL43256.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 644

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+   +  V L KI  VL  + T  I IR HTD+   R  A  N  LS  RA S 
Sbjct: 536 FDLNKSVIRKDASVELAKILTVLNLNPTIKIDIRSHTDS---RQTAAYNMSLSDRRAKST 592

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSA------NRRIDILV 338
            + L++ G+S DR++   G+   +L    SD +N        NRR + ++
Sbjct: 593 IEWLVQKGISPDRLTG-RGYGESQLVNECSDGVNCTGEQHQLNRRSEFII 641


>gi|170720335|ref|YP_001748023.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169758338|gb|ACA71654.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 327

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP ++  + ++ + +       + + GH D S     A  N +LSL+RA S   +   SG
Sbjct: 140 LPMSLGPITRVAKAVEGDPKTAVLVLGHADTS---GAAATNQKLSLERAASVSAIFRLSG 196

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  DR+S + G      + A+D +   + NRR+++L+
Sbjct: 197 LKRDRLS-LKGMGSEMPRAANDSVEGRALNRRVEMLL 232


>gi|125974911|ref|YP_001038821.1| OmpA/MotB [Clostridium thermocellum ATCC 27405]
 gi|281418623|ref|ZP_06249642.1| OmpA/MotB domain protein [Clostridium thermocellum JW20]
 gi|125715136|gb|ABN53628.1| OmpA/MotB [Clostridium thermocellum ATCC 27405]
 gi|281407707|gb|EFB37966.1| OmpA/MotB domain protein [Clostridium thermocellum JW20]
          Length = 266

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS-- 242
           A K  ++++D   ++ + +  +  D  VK +  + + T  + S+I      +FD   +  
Sbjct: 113 ADKEAQKIEDFINEVQNIVEEMDLDEYVKVIEDDKSLTVRMNSVI------LFDLGKADI 166

Query: 243 -IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300
             P  ET   L+KIG ++    +   I+GHTD  P   +    NW LS  RA +    L+
Sbjct: 167 KEPGKET---LRKIGTLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLV 223

Query: 301 -KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
            + GV   +++  +G    R    +D   +   NRRIDI++E
Sbjct: 224 DECGVDPVKLTA-TGNGEFRPIAPNDTEENRQKNRRIDIVIE 264


>gi|119385179|ref|YP_916235.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374946|gb|ABL70539.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 463

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 20/134 (14%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFR 278
           +G+++ ++   +  +F  + +   P    +++ IG  +   AH    +++ GHTD  P +
Sbjct: 337 SGLVVLVVRASDPEVFRSAKASLNPAYQPLVEAIGRTVVANAHRIGAVAVSGHTDNVPVQ 396

Query: 279 --NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-------- 328
             N    N  LS  RA +  Q L  +GV  + IS     A  R    S P+         
Sbjct: 397 RSNPFASNQGLSEARAETVAQALAAAGVPAELIS-----AEGRAD--SQPVGDNATRDGR 449

Query: 329 SANRRIDILVEDRQ 342
           + NRRI+I +E RQ
Sbjct: 450 AQNRRIEIRIEKRQ 463


>gi|171060845|ref|YP_001793194.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778290|gb|ACB36429.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 229

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S   P  + VL K+ + L  + +V  I GHTD+S    +   N  LSLDRA +  
Sbjct: 125 FDVGRSAVKPVMVPVLDKLAQGLDATVQVQVI-GHTDSSGSDAV---NNPLSLDRAEAVR 180

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA-NRRIDILVEDRQ 342
             L + GV   RI ++ G    R  +A  + P   A NRR++I + + Q
Sbjct: 181 DYLSRHGVPAARI-QVEGRG-EREPVADNATPDGRAQNRRVEIFLREPQ 227


>gi|283835926|ref|ZP_06355667.1| OmpA family protein [Citrobacter youngae ATCC 29220]
 gi|291068103|gb|EFE06212.1| OmpA family protein [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270
           ++G     TR+G  I I++  N   FD +SS   P     L  +  VL  +    +++ G
Sbjct: 92  MQGTGVSVTRSGDNI-ILNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYDKTAVNVLG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329
            TD++  +++   N RLS  RA S    L+  GV+ +RI ++  G A+     ++    +
Sbjct: 151 FTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKA 207

Query: 330 ANRRIDILVEDRQ 342
            NRR++I +   Q
Sbjct: 208 QNRRVEITLSPVQ 220


>gi|285017932|ref|YP_003375643.1| hypothetical protein XALc_1141 [Xanthomonas albilineans GPE PC73]
 gi|283473150|emb|CBA15656.1| hypothetical protein XALc_1141 [Xanthomonas albilineans]
          Length = 231

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD + S   P+    L  + + L+ ++  +I + GHTD     NI  D  N RLS  RA 
Sbjct: 126 FDFNQSTLKPQFYSALNGVAKTLSEYNQTMIEVVGHTD-----NIGSDAVNQRLSEQRAS 180

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
           S    L   GV  +RI  +   A  +  IA   ++   + NRR++I V
Sbjct: 181 SVAAYLTAQGVQPERIQTLG--AGKKYPIADNSTEAGRAQNRRVEIRV 226


>gi|308270955|emb|CBX27565.1| hypothetical protein N47_H23870 [uncultured Desulfobacterium sp.]
          Length = 229

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++  +SS   P     L ++ +V+    +  I + GHTD++     A  N +LS  RA +
Sbjct: 123 LYAVNSSTLFPGAYDELDRVAKVINQYPDTRIQVGGHTDST---GSAEYNQKLSEQRAQA 179

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
               L+  GV+  RIS I G+  ++  IAS+   +    NRR++I +
Sbjct: 180 VKNALVSRGVNASRISAI-GYGENK-SIASNETEAGRQQNRRVEIRI 224


>gi|323697842|ref|ZP_08109754.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457774|gb|EGB13639.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 250

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRN 279
           ++G+++ +  Q    +FDK S     E    LQ + + +  +   + IRGHTD  +P   
Sbjct: 125 KSGVMLRLSSQL---LFDKGSVELTAEAKQALQMVIDSMKQTDFNLVIRGHTDGETPESV 181

Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
               NW LS  RA S  + +++ S +   R+  +  G +   L   S+    ANRR++  
Sbjct: 182 QYGSNWSLSAARAASCLRYIIEHSDIPATRMKAVGYGGSKPLLPGTSEENRQANRRVEFF 241


>gi|303240000|ref|ZP_07326522.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592479|gb|EFL62205.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
          Length = 261

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           ++K + +  +++ + +SGL  D  V  V     +T +++ I    +  +FD   +     
Sbjct: 112 KQKAITEFKEEVQALISGLKIDEYVHVV---DVKTSVILRI---DSAILFDVGKADIKES 165

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L+K+GE++      I++ GHTD  P   ++   NW LS  RA +    L+      
Sbjct: 166 GKDTLKKVGELMDKLNTNIAVMGHTDNIPINTSLFPSNWELSTRRATNVVVFLVNECNLN 225

Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
                 +G    R    +D   +   NRR+DI+++
Sbjct: 226 PTKLTATGNGEFRPIAPNDSEENRQKNRRVDIVID 260


>gi|347159|gb|AAC36902.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     I  D  N +LS  RA 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----IGPDAYNQKLSQRRAD 272

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335
           +  QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 273 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|311696900|gb|ADP99773.1| flagellar motor protein MotB [marine bacterium HP15]
          Length = 307

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDR 308
           +L  + EV+      ++I GHTD  P R +    NW LS  R+ +   VL+ +  V   R
Sbjct: 173 LLLDMAEVIEGIPGDLTIEGHTDNVPIRTDRFYSNWDLSAARSAAVANVLVARDQVEPTR 232

Query: 309 ISKISGFAHHRLKIASDPMNSA-----NRRIDILVE 339
           +S ++G A  + ++   P  SA     NRR++I+++
Sbjct: 233 LS-VTGLADTKPRV---PNTSAENRAKNRRVEIIID 264


>gi|167035280|ref|YP_001670511.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861768|gb|ABZ00176.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 325

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 245 LPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP T+  + ++ + V       + + GH D+S     A  N +LSL+RA S   +   SG
Sbjct: 140 LPMTLGPITRVAKTVEGDPKTAVLVLGHADSS---GAAAANQKLSLERAASVSAIFRLSG 196

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  DR++ + G      + A+D     S NRR+++L+
Sbjct: 197 LQRDRLT-LKGMGSVMPRAANDSAEGRSLNRRVEMLL 232


>gi|319955585|ref|YP_004166852.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319424245|gb|ADV51354.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 275

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFR 278
           +T ++I+I D+    +F+  S     +   +L+KI +V+    S EV+ + GHTD+   +
Sbjct: 141 KTVVMINISDKL---LFNSGSYTVSNKANNILKKIADVINSEPSMEVM-VEGHTDSRTIQ 196

Query: 279 N-IARDNWRLSLDRAYSAYQVLMK 301
             + +DNW LS+ RA S  ++L K
Sbjct: 197 TPMFQDNWDLSVKRATSVVRILQK 220


>gi|15618690|ref|NP_224976.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           CWL029]
 gi|15836314|ref|NP_300838.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           J138]
 gi|16752260|ref|NP_445628.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           AR39]
 gi|33242140|ref|NP_877081.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila
           pneumoniae TW-183]
 gi|4377090|gb|AAD18919.1| Peptidoglycan-Associated Lipoprotein [Chlamydophila pneumoniae
           CWL029]
 gi|7190005|gb|AAF38862.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           AR39]
 gi|8979154|dbj|BAA98989.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           J138]
 gi|33236650|gb|AAP98738.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila
           pneumoniae TW-183]
          Length = 192

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           RN      S +I   E + +L  +   +  + +  + I GHTD    R  A  N  L   
Sbjct: 84  RNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDE---RGAASYNLALGAR 140

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           RA +  + L K G+S DR+S IS    H L    + +    NRR +  +  R
Sbjct: 141 RANAIKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQQNRRTEFKIHAR 192


>gi|332877182|ref|ZP_08444932.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684925|gb|EGJ57772.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 284

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEV-ISI 268
           ++KGV++        IS+ D     M  KS S  + E     L KI +++    E  + I
Sbjct: 141 VLKGVVY--------ISLADN----MLYKSGSYEISERAGETLSKIAKIIMDYKEYEVLI 188

Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
            G+TD  P  R   R+NW LS  RA S  Q L  + GV   R++      ++ +     P
Sbjct: 189 EGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTAAGRGEYNPVASNDTP 248

Query: 327 MNSA-NRRIDILV 338
                NRR  I++
Sbjct: 249 EGKMRNRRTQIII 261


>gi|116249829|ref|YP_765667.1| hypothetical protein RL0063 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254477|emb|CAK05551.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 418

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GHTDAS     A  N RLSL+RA +    L++ GV+ DR+  ++  A     IAS+
Sbjct: 111 LRIVGHTDAS---GNAETNERLSLERANAIKAALVERGVNTDRL--LAAGAGQTRPIASN 165

Query: 326 PMNSA---NRRIDIL 337
                   NRR++++
Sbjct: 166 ETAEGKALNRRVELV 180


>gi|77457455|ref|YP_346960.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77381458|gb|ABA72971.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 364

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP T+    ++ ++L A     + + GH+D +     A  N +LS +RA +   +   SG
Sbjct: 180 LPVTLGPFTRVAKILEADPKTAVLVLGHSDTT---GAAPANVKLSQERAQAVAAIFRLSG 236

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  DR+  + G      + A+D +   + NRR+++LV
Sbjct: 237 LQRDRL-MLRGMGSEAPRAANDSVEGRALNRRVELLV 272


>gi|224367491|ref|YP_002601654.1| OmpA1 [Desulfobacterium autotrophicum HRM2]
 gi|223690207|gb|ACN13490.1| OmpA1 [Desulfobacterium autotrophicum HRM2]
          Length = 374

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  P     L K+ +VL +     + I+GHTD+   R   + N  LSL RA + 
Sbjct: 271 FDFDKSIIKPAGFEFLDKVVDVLKSRPALFVKIQGHTDSIGTR---KYNDALSLRRAKAV 327

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDI 336
              L+  G+ ++R+S   GFA  +  +AS+      + NRR+++
Sbjct: 328 KTYLINKGIDKNRLS-CEGFAFSK-PVASNKTAEGRAMNRRVEL 369


>gi|221640526|ref|YP_002526788.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161307|gb|ACM02287.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 228

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +L +    I++ GHTD++     A  N  LS+ RA S   VL+ +GV   R+S I     
Sbjct: 146 LLRYPNSTIAVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPSYRVSAIGRGED 202

Query: 318 HRLKIASDPMNSA-NRRIDILV 338
             +     P   A NRR+DI++
Sbjct: 203 QPIASNLTPEGRAQNRRVDIII 224


>gi|313205304|ref|YP_004043961.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312444620|gb|ADQ80976.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 294

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAY 293
           +F   S+    + I  ++ + +VL  + E+ I + GHTD  P +  + +DNW LS+ RA 
Sbjct: 174 LFKSGSAAIESKGIDAIKVLADVLNKNAEIDILVEGHTDNIPIKTALYQDNWDLSVARAI 233

Query: 294 SAYQVLMKSGVSEDRISKI------SGFAHHRLKIASDPMNSANRRIDILV 338
           S  ++L     +E RI+         G    R   A+    ++NRR +I++
Sbjct: 234 SIVRIL----TNEYRIAPTRLTASGKGEFSPRASNATPEGRASNRRTEIIL 280


>gi|242280306|ref|YP_002992435.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123200|gb|ACS80896.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 250

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           ++H  + I+I+G+TD +   + +R  DNW +S  RA +  + LMK G+  +R++
Sbjct: 161 ISHPDQYINIKGYTDDTQPSSKSRLKDNWEISSLRAVNVLRYLMKLGIKPNRLT 214


>gi|289668951|ref|ZP_06490026.1| OmpA family protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 200

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 106 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRR 164

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG    +  IA  P      + NRR++IL+
Sbjct: 165 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 196


>gi|254787924|ref|YP_003075353.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901]
 gi|237683974|gb|ACR11238.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901]
          Length = 304

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 22/159 (13%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +A+ R   +++ A +++S L         + V  +  + G++I++ D     +F    S 
Sbjct: 149 MAVARANSMEEKASQMASKL---------ESVTTKLDKRGLVITMGD----ILFATDESE 195

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  +  L+K+ ++LA +    I + G TD++     A  N  LS  RA +  + L+ +
Sbjct: 196 VKPGAVRTLEKVSDLLAEYPDREILVEGFTDST---GAADYNKNLSERRAEAVVKQLVDN 252

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           G++EDR+S   G+      +AS+   +    NRR++++V
Sbjct: 253 GLAEDRLS-AKGYGEE-YPVASNDTAAGRQQNRRVELVV 289


>gi|56698398|ref|YP_168771.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680135|gb|AAV96801.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 221

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWR 286
           I+   N   FD  SS   P     LQK+   L  +    + + GHTD+      A  N  
Sbjct: 108 IVSVPNDITFDTDSSTVRPGLRSDLQKVAAHLVRYPQSSVQVIGHTDSD---GEAAYNQG 164

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSA-NRRIDILVEDR 341
           LS  RA +   +L   GV+ DRIS + G   +   IAS+  P   A NRR++I+V  R
Sbjct: 165 LSERRAGAVADILQAGGVTYDRISTL-GMGENS-PIASNLTPEGKARNRRVEIVVIPR 220


>gi|288801975|ref|ZP_06407416.1| lipoprotein PG3 [Prevotella melaninogenica D18]
 gi|288335410|gb|EFC73844.1| lipoprotein PG3 [Prevotella melaninogenica D18]
          Length = 225

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I+G+TDAS   NI   N  LS  RA +    L   GVS  +I  + GF      I + 
Sbjct: 142 VAIQGYTDASGNDNI---NLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGSAN-PIENK 197

Query: 326 PMNSANRRIDILV 338
            ++ ANRR+++ +
Sbjct: 198 TISQANRRVEVYL 210


>gi|302347069|ref|YP_003815367.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
 gi|302150976|gb|ADK97237.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
          Length = 225

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I+G+TDAS   NI   N  LS  RA +    L   GVS  +I  + GF      I + 
Sbjct: 142 VAIQGYTDASGNDNI---NLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGSAN-PIENK 197

Query: 326 PMNSANRRIDILV 338
            ++ ANRR+++ +
Sbjct: 198 TVSQANRRVEVYL 210


>gi|326799849|ref|YP_004317668.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326550613|gb|ADZ78998.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 302

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 23/136 (16%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV-ISI 268
           ++KGV++        IS+ D     M  KS S  + P     L KI +++    E  + I
Sbjct: 149 VLKGVVY--------ISLSDN----MLYKSGSYEISPAAGETLGKIAKIIMDYKEYEVLI 196

Query: 269 RGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325
            G+TD  P   +NI R+NW LS  RA S  Q L    GV   R++  +G       IAS+
Sbjct: 197 EGNTDNVPISQKNI-RNNWDLSALRASSVVQALQNDYGVDPKRLT--AGGRGEYNPIASN 253

Query: 326 PMNSA---NRRIDILV 338
              +    NRR  I++
Sbjct: 254 DTEAGRTRNRRTQIII 269


>gi|117621479|ref|YP_855927.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562886|gb|ABK39834.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 308

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL  +  +L      + +RG+TD     N I R NW LS  RA +    L+  G++  R+
Sbjct: 166 VLNTLSSILKQVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGIAPQRL 225

Query: 310 S 310
           +
Sbjct: 226 A 226


>gi|254491010|ref|ZP_05104191.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224463523|gb|EEF79791.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 263

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL  I E LA   +   + GH+D  P R+   R NW LS  RA S    L++        
Sbjct: 168 VLSLIAETLAELDDTFIVSGHSDNVPLRSGNYRSNWELSGARATSVVHALLRHPKLVPSQ 227

Query: 310 SKISGFAHHRLKIASDPM--NSANRRIDI 336
            +I  +A  +   ++D     + NRR++I
Sbjct: 228 FRIEAYADTQPVESNDTAAGRATNRRVEI 256


>gi|119896572|ref|YP_931785.1| hypothetical protein azo0281 [Azoarcus sp. BH72]
 gi|119668985|emb|CAL92898.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72]
          Length = 214

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 259 LAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGV 304
           LA   E++ + G TD  P R+  R   DNW LS  RA +  +VL++ GV
Sbjct: 118 LASHDEMLMVSGFTDDRPVRDSNRQFADNWELSAQRALTVTRVLVEEGV 166


>gi|256833230|ref|YP_003161957.1| OmpA/MotB domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686761|gb|ACV09654.1| OmpA/MotB domain protein [Jonesia denitrificans DSM 20603]
          Length = 305

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 16/165 (9%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K+   A    + LQ LA +I + L   GL        V +     G+++ ++   +  +F
Sbjct: 124 KDMAAAQAEYENLQSLADRIDAALRKRGLEG-----SVEYRINERGLIVGLV---SDELF 175

Query: 238 DKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
            ++ +  L +T   V+     +L      +SI GH ++    N  + NW LS DRA    
Sbjct: 176 FQADTARLTKTTERVVDTTARILRELDNELSIEGHANSLQSVNY-KSNWELSSDRATQVL 234

Query: 297 QVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           +  ++ G +S  RI+ + GF   R    +D       NRR+DI++
Sbjct: 235 RRYVEKGKISGTRIAAV-GFGDTRPLADNDTKRGLKINRRVDIVI 278


>gi|84624549|ref|YP_451921.1| hypothetical protein XOO_2892 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368489|dbj|BAE69647.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 438

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           MF   S+    +   +L+++   L      + + GHTD  P R++  +DN+ LS  RA S
Sbjct: 329 MFPSGSAELDADQTYLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAES 388

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338
              VL  +G+ + R  + SG    +  IA  P      + NRR++IL+
Sbjct: 389 VGAVL-AAGLRDRRRVQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434


>gi|117922218|ref|YP_871410.1| chemotaxis protein MotB-like protein [Shewanella sp. ANA-3]
 gi|117614550|gb|ABK50004.1| chemotaxis protein MotB-related protein [Shewanella sp. ANA-3]
          Length = 243

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-----------KI 312
           + + + GHTD++      + NW LS DRA S +++         ++S            +
Sbjct: 139 DTVFVEGHTDSNGIWYRGKGNWGLSTDRAVSIWKLWQTEINVAPKLSVLTNYNGQLLFSV 198

Query: 313 SGFAHHR---LKIASDPMNSANRRIDI 336
           SG+A  R   L+  ++   + NRRIDI
Sbjct: 199 SGYADTRRVDLQETTEEQRARNRRIDI 225


>gi|330998481|ref|ZP_08322305.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568587|gb|EGG50392.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 292

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEV-ISI 268
           ++KGV++        IS+ D     M  KS S  + E     L KI +++    E  + I
Sbjct: 149 VLKGVVY--------ISLADN----MLYKSGSYEISERAGETLSKIAKIIMDYKEYEVLI 196

Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
            G+TD  P  R   R+NW LS  RA S  Q L  + GV   R++      ++ +     P
Sbjct: 197 EGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTAAGRGEYNPVASNDTP 256

Query: 327 MNSA-NRRIDILV 338
                NRR  I++
Sbjct: 257 EGKMRNRRTQIII 269


>gi|182680245|ref|YP_001834391.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636128|gb|ACB96902.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 345

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           V+ + GHTD    +++    NW LS+ RA +    L   GV  DR++  +GF   +    
Sbjct: 267 VMRVDGHTDKKQIKSVQFPSNWELSVARALAVVHYLTDKGVPPDRLAA-AGFGSFQ---P 322

Query: 324 SDPMNSA-----NRRIDILVEDR 341
            DP +S      NRRI++ + ++
Sbjct: 323 LDPGDSEEALKRNRRIELKITEK 345


>gi|149919675|ref|ZP_01908153.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
 gi|149819446|gb|EDM78876.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
          Length = 262

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324
           + GHTD  P +    + NW LS  RA      L+ +G+  +RI   +G+A     +A  S
Sbjct: 175 VAGHTDNVPIKTAKFQSNWELSSARAVEVVTFLIDTGMPAERIGS-AGYAEFD-PVADNS 232

Query: 325 DPMNSA-NRRIDILV 338
            P   A NRRI+I++
Sbjct: 233 SPEGRAQNRRIEIVL 247


>gi|255533363|ref|YP_003093735.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255346347|gb|ACU05673.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 282

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 19/134 (14%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEV-ISI 268
           ++KGV++        IS+ D     M  KS S   LP+    L KI +++    +  + I
Sbjct: 142 VLKGVVY--------ISLSDN----MLYKSGSYEILPKAGETLSKIAKIIKDYRDYDVLI 189

Query: 269 RGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD- 325
            G+TD  P   +  R+NW LS  RA S  Q L  + GV   R++   G   +    A+D 
Sbjct: 190 EGNTDNVPISMVNIRNNWDLSALRASSVVQALQNTYGVDPKRLTA-GGRGEYNPLAANDT 248

Query: 326 -PMNSANRRIDILV 338
               + NRR  I++
Sbjct: 249 EAGKAKNRRTQIII 262


>gi|641920|gb|AAA85840.1| protein F precursor [Pseudomonas fluorescens]
          Length = 317

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     +  D  N +LS  RA 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335
           +  QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 273 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|167590675|ref|ZP_02383063.1| hypothetical protein BuboB_35381 [Burkholderia ubonensis Bu]
          Length = 394

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285
           S +  R   MF    +     +  ++ KI   +A     +++ G+TD +P R  A   N 
Sbjct: 279 STVTFRGDAMFPPGKAAVNASSGPLIAKIAAEIARVPGKVTVLGYTDNAPVRGSAFPSNE 338

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            LS  RA    Q+L  +GV  +R++ +  G A+      + P  + NRR++I V
Sbjct: 339 ALSDARATQVMQMLQAAGVPANRLAALGKGAANPIGDNRTVPGRALNRRVEITV 392


>gi|256830500|ref|YP_003159228.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579676|gb|ACU90812.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L +  + LA  T  +++ G+TD  P     +DN+ LS +RA S     ++ G    R S
Sbjct: 148 LLSEFAQFLASVTMPVNVAGYTDNIPAGQ--KDNYMLSSERAMSVLTFFLQQGFDPRRFS 205

Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILVE 339
             +      L   + P   A NRR++IL++
Sbjct: 206 VSAYGEAFPLGDNATPEGRAKNRRVEILLK 235


>gi|91217237|ref|ZP_01254198.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
 gi|91184580|gb|EAS70962.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
          Length = 616

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276
           E T T   I I+ +R    FD       PE    L K+ E+L  +  + I +  HTD   
Sbjct: 494 EMTSTEAKILILQER--IFFDYDKVNIKPEAAFELDKLIEILKENENINIQVVSHTDE-- 549

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            R     N +LS DRA S    L+++GV  +R+S
Sbjct: 550 -RGSGAYNMKLSQDRAGSTVAYLIENGVDPERLS 582


>gi|295134908|ref|YP_003585584.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294982923|gb|ADF53388.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 281

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 19/135 (14%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           N+ KGV++        +SI D+    +FD        +   VL K+  V+ +  ++   +
Sbjct: 137 NVEKGVVY--------VSISDK---LLFDSGRYNVTNQAREVLGKVATVIKNKPDIEFMV 185

Query: 269 RGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
            GHTD  S   ++ +DNW LS+ RA S  ++L    GV   R++  +G +++ + +AS+ 
Sbjct: 186 EGHTDDKSISTSMFQDNWDLSVKRATSVVRILQDEFGVDPKRMTA-AGRSYY-MPVASNA 243

Query: 327 M---NSANRRIDILV 338
                + NRR  I+V
Sbjct: 244 TAEGRAKNRRTRIVV 258


>gi|166712215|ref|ZP_02243422.1| hypothetical protein Xoryp_12360 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 438

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG A     IA  P      + NRR++IL+
Sbjct: 403 VQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 434


>gi|297183087|gb|ADI19231.1| flagellar motor protein [uncultured delta proteobacterium
           HF0200_14D13]
          Length = 211

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 16/102 (15%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDRI 309
            QKI ++  H  +++++ GH D  P   +    NW LS  RA +   +L+ + G + D +
Sbjct: 93  FQKIRDLPEHQGDLVTVEGHADNLPIHTDKYPSNWELSTARATNVATMLINRMGYASDTL 152

Query: 310 SKISGFAHHRLKI-------------ASDPMNSANRRIDILV 338
           S ++G++  R K+             A +     NRR++I++
Sbjct: 153 S-VNGYSDTRPKVSYKDARGNALRGTALEVARRTNRRVEIVI 193


>gi|285019096|ref|YP_003376807.1| outer membrane protein [Xanthomonas albilineans GPE PC73]
 gi|283474314|emb|CBA16815.1| hypothetical outer membrane protein [Xanthomonas albilineans]
          Length = 216

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 264 EVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           E++ + G TD    R   R   DNW LS +RA +  + L+ +GV  D I   +  A   +
Sbjct: 124 EILMVSGFTDDRQVRVGNRQFVDNWELSAERALTVTRALIDAGVPADAIFAAAFGAQQPV 183

Query: 321 KI-ASDPMNSANRRIDI 336
              A D   ++NRR+++
Sbjct: 184 ASNADDAGRASNRRVEM 200


>gi|99082187|ref|YP_614341.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99038467|gb|ABF65079.1| OmpA family protein [Ruegeria sp. TM1040]
          Length = 207

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GHTDA   +     N RL L RA +A   L+  G+S  R+  ++ F   +  I +D  
Sbjct: 98  VYGHTDAVGSQTY---NKRLGLRRARAAVNYLVSRGISRSRLEAVASFGETQPLIVTDQR 154

Query: 328 NSANRR 333
              NRR
Sbjct: 155 ERRNRR 160


>gi|284038953|ref|YP_003388883.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283818246|gb|ADB40084.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 285

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           V + I  +  H TE ++I GHTD++        N +LS  RA      L+K G S+  I 
Sbjct: 197 VREAITYLYNHPTERLTITGHTDST---GTEAFNLKLSRLRAMVVRDKLIKQGASKRWIQ 253

Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILVEDR 341
            I+    ++L IA + +     ANRR+ +LV+ R
Sbjct: 254 VIA--MGNKLPIAPNNLPEGREANRRVTLLVKKR 285


>gi|110680553|ref|YP_683560.1| hypothetical protein RD1_3382 [Roseobacter denitrificans OCh 114]
 gi|109456669|gb|ABG32874.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 659

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-L 320
           +I + GHTD  P   + +  DNW LS  RA S  + ++ + G+  +R++  +GF   + +
Sbjct: 579 IIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVDTLGIPPNRLAA-NGFGEFQPV 637

Query: 321 KIASDPMNSA-NRRIDI 336
            +   P   A NRRI++
Sbjct: 638 AVEDTPEARAQNRRIEL 654


>gi|150377808|ref|YP_001314403.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150032355|gb|ABR64470.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 420

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P    +L  I   L +  +  + I GHTDAS     A  N RLSL+RA + 
Sbjct: 83  FDTGQSTLQPSAKPLLDDIATALKNFPDWGLRIVGHTDAS---GSAESNERLSLERADTI 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDIL 337
              L++ G+   ++  ++  A     IAS   D   + NRR++++
Sbjct: 140 KAALVERGIDAGKL--LAAGAGQNRPIASNETDEGRALNRRVELM 182


>gi|110639902|ref|YP_680112.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282583|gb|ABG60769.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 505

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 41/172 (23%)

Query: 174 FLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           + P L    I A ++K     R+ +L+K  S T      + ++  VLFE T   +L    
Sbjct: 361 YYPTLDTFVITAAEQKALYATRIIELSKLSSGT------NILLHNVLFERTSYELL---- 410

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRL 287
                     SSS+P  + +V +        +   +I + GHTD     N+  A+ N  L
Sbjct: 411 ----------SSSLPALDQLVTVMN-----QYPGMIIELSGHTD-----NVGSAKKNMEL 450

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDI 336
           S +R  SA + L+  G+S DRI  + G+   +  +AS   +     NRR+++
Sbjct: 451 SKNRVESAKKYLVSKGISADRIKSV-GYG-SKYPVASNDGEQTRKYNRRVEL 500


>gi|145298369|ref|YP_001141210.1| flagellar motor protein MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851141|gb|ABO89462.1| Flagellar motor protein MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 305

 Score = 36.2 bits (82), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL  +  +L      + +RG+TD     N I R NW LS  RA +    L+  GV+  R+
Sbjct: 166 VLNTLSSILKPVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGVAPQRL 225

Query: 310 S 310
           +
Sbjct: 226 A 226


>gi|312795362|ref|YP_004028284.1| OmpA family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167137|emb|CBW74140.1| OmpA family protein [Burkholderia rhizoxinica HKI 454]
          Length = 224

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    P    VL ++ + L    E+++ + GHTD++      R N  LS +RA S 
Sbjct: 116 FDTNSYAIKPSFTPVLDQVAQTLTQHPELVAHVVGHTDST---GQPRYNQMLSQERAQSV 172

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            Q L   GV+  R++    G +      +++   + NRR++I +
Sbjct: 173 AQYLALHGVAAQRLAAEGRGQSQPIADNSTEAGRAQNRRVEIYL 216


>gi|308066932|ref|YP_003868537.1| chemotaxis motB protein (Motility protein B) [Paenibacillus
           polymyxa E681]
 gi|305856211|gb|ADM67999.1| Chemotaxis motB protein (Motility protein B) [Paenibacillus
           polymyxa E681]
          Length = 275

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--NP 89
           SW + Y+D MT+L+A F+V++ +++ D    + + Q  +           G+ D    NP
Sbjct: 16  SWLLPYSDLMTLLLALFIVLFGMSSLDAKKFETMAQSLSA----AFNGGTGVLDHSAANP 71

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTN--QKKQYQRLENNI 131
             +S    +D+  ++      V  K  ST+  QK+  QR E ++
Sbjct: 72  SSQS----MDMGKNKEQVSQPVKSKATSTSELQKQLAQREEEDL 111


>gi|58582662|ref|YP_201678.1| hypothetical protein XOO3039 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427256|gb|AAW76293.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 438

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG    +  IA  P      + NRR++IL+
Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434


>gi|310639572|ref|YP_003944330.1| ompa/motb domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309244522|gb|ADO54089.1| OmpA/MotB domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 275

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--NP 89
           SW + Y+D MT+L+A F+V++ +++ D    + + Q  +    +  +   G+ D    NP
Sbjct: 16  SWLLPYSDLMTLLLALFIVLFGMSSLDAKKFETMAQSLS----SAFSGGTGVLDHSAANP 71

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTN--QKKQYQRLENNI 131
             +S    +D+  ++      +  K  ST+  QK+  QR E ++
Sbjct: 72  SSQS----MDMGKNKEEVSQPLKSKATSTSDLQKQLAQREEEDL 111


>gi|150024266|ref|YP_001295092.1| OmpA family outer membrane protein P60 [Flavobacterium
           psychrophilum JIP02/86]
 gi|113927364|emb|CAL07968.2| outer membrane protein A [Flavobacterium psychrophilum JIP02/86]
 gi|149770807|emb|CAL42272.1| Outer membrane protein OmpA family P60 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 465

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-A 260
           T+ G VA+N    V  E  +      + D   T +FD +      +T+ +L  +  +L  
Sbjct: 333 TVKGTVANNGCPEVSEEAIK-----KLNDYAKTILFDNAKFTFQKQTLPILDAMVAILNE 387

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             T   SI G+TD S  +     N  LS +RA +    L+  G+S DR++ I G+    +
Sbjct: 388 FPTSKFSIEGNTDNSGKKAT---NQTLSENRAKAVADFLISKGISSDRLTSI-GYGDS-M 442

Query: 321 KIASDPMNSA---NRRIDILV 338
            IAS+   +    NRR+++ V
Sbjct: 443 PIASNKTKAGKAQNRRVEVKV 463


>gi|104780481|ref|YP_606979.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109468|emb|CAK14169.1| putative outer membrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 322

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           LP T+  + ++ +V+   T+  + I GH D+S        N +LSL+RA S   +   SG
Sbjct: 139 LPITLGPITQVAKVIETDTKTAVLILGHADSS---GATAANQKLSLERAASVSAIFRLSG 195

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +  DR+  + G      + A+D     + NRR+++L+
Sbjct: 196 LQRDRL-MLKGMGSVMPRAANDSAEGRALNRRVEMLL 231


>gi|323697552|ref|ZP_08109464.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457484|gb|EGB13349.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 248

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 259 LAHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           + H  + I I G+TD   P  N   +DNW +S  RA +  + L+K G+   R++  +G A
Sbjct: 159 IKHKDQNIKIVGYTDNVRPGGNSRFKDNWEISAMRAVNVLRELLKLGLESTRLTA-TGLA 217

Query: 317 HHR--LKIASDPMNSANRRIDILVEDR 341
           +        S+   + NRR++ ++E R
Sbjct: 218 YLNPLYPNTSEEYRAKNRRVEFILEKR 244


>gi|294666305|ref|ZP_06731554.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603907|gb|EFF47309.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 419

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
           +  MF        P+   V+ +I   +      + + GHTD  P R++  +DN+ LS  R
Sbjct: 307 SAAMFASGGVEVEPQQRGVIAQIAAAIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAAR 366

Query: 292 AYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSA-NRRIDILVE 339
           A +  QVL     +  R+  I +G +    +    P N A NRR++IL +
Sbjct: 367 AQALAQVLQAQLSTPGRVEAIGAGDSQPIAQPVQLPANRARNRRVEILFQ 416


>gi|188575822|ref|YP_001912751.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520274|gb|ACD58219.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 438

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+++   L      + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R 
Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402

Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338
            + SG    +  IA  P      + NRR++IL+
Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434


>gi|94500908|ref|ZP_01307434.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65]
 gi|94427027|gb|EAT12009.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65]
          Length = 2033

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 266 ISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-- 319
           I + GHTD  P     R+I  +N+ LSL RA SA   LM+          ISG+   R  
Sbjct: 872 IEVAGHTDNVPIAKRSRHIFNNNYELSLARARSAADYLMRELELGPEQVTISGYGSQRPV 931

Query: 320 LKIASDPMNSANRRIDI 336
               ++   + NRR+++
Sbjct: 932 TNNGNEQSRALNRRVEV 948


>gi|325335721|gb|ADZ11995.1| Flagellar motor protein [Riemerella anatipestifer RA-GD]
          Length = 281

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMK 301
           LP    VL K+ +V+  +    + I G+TD  P  +  + +DNW LS  RA S  +VL  
Sbjct: 165 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQN 224

Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             GV   RI+   G + +  K  +  ++  + NRR +I++
Sbjct: 225 QFGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIII 263


>gi|261417146|ref|YP_003250829.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373602|gb|ACX76347.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326585|gb|ADL25786.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 232

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 37/219 (16%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N+ Y +N +   H K  LT   + KGK +  +TD    +  E ++ +P      IL    
Sbjct: 33  NVTY-TNEENVPHAKKKLTFVGQNKGKKVVITTD----VYGEASFHIPREDSYTIL---- 83

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG---VLFETTR---TGILISIIDQRNTPMFDKSSS 242
               + L        +  V+     G   V+F+ TR   TG+            F   S+
Sbjct: 84  ---CESLTGPFECGETPYVSRTASTGGISVVFDDTRSELTGV-----------TFKAGSA 129

Query: 243 IPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
             +P ++  L   I  +  +    I + GHT +      A  N +LS DRA S    +++
Sbjct: 130 ELVPSSLKTLNAAIAGLKRNPKAKIEVEGHTSSD---GSAELNQQLSEDRANSVRNYMIE 186

Query: 302 SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            G+  DR++ + G+   R K   +++    ANRRI++ V
Sbjct: 187 QGIDADRVTAV-GYGPSRPKGDNSTEAGRRANRRIELKV 224


>gi|313206839|ref|YP_004046016.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312446155|gb|ADQ82510.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
 gi|315023913|gb|EFT36915.1| putative flagellar motor protein MotB [Riemerella anatipestifer
           RA-YM]
          Length = 278

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMK 301
           LP    VL K+ +V+  +    + I G+TD  P  +  + +DNW LS  RA S  +VL  
Sbjct: 162 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQN 221

Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             GV   RI+   G + +  K  +  ++  + NRR +I++
Sbjct: 222 QFGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIII 260


>gi|304312414|ref|YP_003812012.1| Predicted OmpA family protein [gamma proteobacterium HdN1]
 gi|301798147|emb|CBL46369.1| Predicted OmpA family protein [gamma proteobacterium HdN1]
          Length = 244

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 207 VADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAH 261
           +AD +  G +  +  R GI  S+       +F  +S+   PE + +L+++     + L  
Sbjct: 72  LADPLASGRITLDRGRIGISGSV-------LFALNSAELQPEGLALLREVSAPLRKYLEQ 124

Query: 262 STEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             E++ + G TD  P +   +   DNW LS +RA +  + L+ +G+    +   +  A  
Sbjct: 125 RQELLMVSGFTDDLPIQKGNHSFTDNWALSAERALTVTRALIDNGLPSTLVFAAAFGAEQ 184

Query: 319 RLKIASDPMNSA-NRRIDI 336
            +   SD    A NRR++I
Sbjct: 185 PIASNSDAEGRAKNRRVEI 203


>gi|237738475|ref|ZP_04568956.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817]
 gi|229420355|gb|EEO35402.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817]
          Length = 185

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +G+ LA + ++ + I GHTD   +    + N  LSL RA S    L+  GVS + IS
Sbjct: 93  LNTLGKALAENKDIKLKIDGHTD---YIGTEQYNLNLSLKRANSIKNYLIGRGVSANNIS 149

Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338
            I G+      +A++   +    NRR++ ++
Sbjct: 150 -IEGYGKQN-PVANNSTEAGRAKNRRVEFII 178


>gi|113866689|ref|YP_725178.1| outer membrane protein [Ralstonia eutropha H16]
 gi|113525465|emb|CAJ91810.1| outer membrane protein [Ralstonia eutropha H16]
          Length = 425

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           L+ L+ D I +GV+    + TR+ +       R   MF    +    + + +L K+   +
Sbjct: 288 LAELLKDEIARGVISVQEDATRSAVTF-----RGDDMFGGGRAEVSDKVLPLLDKVAGEI 342

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
              +  +++ GH+D  P +      N  LS +RA +  + L   GV+++R+  I      
Sbjct: 343 NKVSGKVTVVGHSDNVPIKTAKYPSNQVLSEERAATVTEYLASKGVAKNRLEAIGKGDSE 402

Query: 319 RLKIASDPMNSA-NRRIDILV 338
            L     P   A NRR++I+V
Sbjct: 403 PLTDNKTPAARARNRRVEIVV 423


>gi|312891209|ref|ZP_07750731.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296376|gb|EFQ73523.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 267

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSE 306
            L+++  VL    ++ I++ GHTD     N+   +DNW LS+ RA S  + L ++  V  
Sbjct: 162 ALKQLAAVLNKEPDIYIAVEGHTDDKKVINLGQIKDNWDLSVLRATSVTRYLTETEKVDP 221

Query: 307 DRISKISGFAHHRLKIASDPMNSA-NRRIDILVEDR 341
            R++         +  A  P   A NRRI+I++  R
Sbjct: 222 VRLTATGKGQFQPIDPAGTPEARAKNRRIEIVLSPR 257


>gi|150388139|ref|YP_001318188.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948001|gb|ABR46529.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWR 286
           +I  R++ +F    +    E  ++L  +   L      I I G TD  P + N    NW 
Sbjct: 122 VIRFRDSVLFGSGQARISQEGYMLLDHVTAKLRTIDNAIVIEGFTDNIPIQTNEFPSNWE 181

Query: 287 LSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338
           LS+ RA    + ++ +  + E RIS +SGF   +  I S+  N     NRRI+I +
Sbjct: 182 LSVARAIGVARYMIDEEYIEESRIS-VSGFGEQQ-PIDSNETNEGRANNRRIEITI 235


>gi|257871284|ref|ZP_05650937.1| flagellar motor protein MotB [Enterococcus gallinarum EG2]
 gi|257805448|gb|EEV34270.1| flagellar motor protein MotB [Enterococcus gallinarum EG2]
          Length = 254

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +W + Y+D +T+L+A F+VM+ +   DD+  + I   F 
Sbjct: 14 AWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFG 52


>gi|302878485|ref|YP_003847049.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302581274|gb|ADL55285.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 347

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD SS+   P     L ++ +  A   E  ++I GHTD+   R   + N +LSL RA S 
Sbjct: 235 FDTSSAKIKPAADKKLNEVVDFAAKYKESNLAISGHTDS---RGSEKLNQKLSLSRAESV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336
              L+K GVS  RI+   G A  R  +A +   +    NRR++I
Sbjct: 292 KAYLVKKGVSAARIT-TKGEASTR-PVADNKTKAGRAQNRRVEI 333


>gi|124007678|ref|ZP_01692381.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123986800|gb|EAY26572.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 705

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ V L K+ +++ ++ ++ + I  HTD      +   N RLS  RA S +  L+K+GV 
Sbjct: 608 DSYVELAKVVQLMENNKDIKLEISAHTDNV---GVYSRNMRLSRQRAQSVFNYLIKTGVD 664

Query: 306 EDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           + R +SK  G A   +   +    + NRR++  V
Sbjct: 665 KKRLVSKGYGSARPLVPNTTKKNKAKNRRVEFKV 698


>gi|330819528|ref|YP_004348390.1| type IV / VI secretion system protein, DotU family [Burkholderia
           gladioli BSR3]
 gi|327371523|gb|AEA62878.1| type IV / VI secretion system protein, DotU family [Burkholderia
           gladioli BSR3]
          Length = 469

 Score = 35.8 bits (81), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +   P  I +L+++   L      + + GHTD  P R++  +DN+ LS  RA +
Sbjct: 360 LFPSGGADIAPAEIPLLRQVAAALNQVKGRVIVVGHTDDQPIRSLKFKDNFALSTARAQN 419

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDIL 337
              +L + G+ + R  + +G A     IA+ P      + NRR++IL
Sbjct: 420 TLAILAQ-GLDDPRRLEANG-AGSSQPIATPPSLPENRARNRRVEIL 464


>gi|302875899|ref|YP_003844532.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
          743B]
 gi|307689333|ref|ZP_07631779.1| chemotaxis MotB protein [Clostridium cellulovorans 743B]
 gi|302578756|gb|ADL52768.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 245

 Score = 35.8 bits (81), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +W I YAD +T+L+A F+VM+ ++  D+     + Q  N
Sbjct: 15 TWLIPYADMLTLLLALFIVMFAMSKLDNQKVSQVSQQLN 53


>gi|89890270|ref|ZP_01201780.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7]
 gi|89517185|gb|EAS19842.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7]
          Length = 286

 Score = 35.8 bits (81), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPF---RNIARDNWRLSLDRAYS 294
           + SS P+ ++I     I  +L H    I I+GH    SP    R++    W LS  RA  
Sbjct: 185 RESSFPVMDSI-----INSLLLHKKYEIEIQGHICCLSPGVYGRDMDTGQWNLSKARAEQ 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
             + L+K GV+ DR++ I   A+ +    +   +  +RR++I
Sbjct: 240 VKRFLVKYGVAADRLTTIGKQANFK----TGKGDFYDRRVEI 277


>gi|311746464|ref|ZP_07720249.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1]
 gi|126575359|gb|EAZ79691.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1]
          Length = 282

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 251 VLQKIGEVL-AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           +LQK+ EV+ A  +  + I GHTD  S    + +DNW LS+ RA S  + L ++  V+ +
Sbjct: 180 LLQKLAEVINAEPSLQVMIEGHTDPRSISTGVLQDNWDLSVKRATSIVRKLQENYSVAPE 239

Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
           ++      ++  L     P N A NRR  I++
Sbjct: 240 KMIAAGRSSYMPLVENDTPENMAINRRTRIVL 271


>gi|86740618|ref|YP_481018.1| OmpA/MotB [Frankia sp. CcI3]
 gi|86567480|gb|ABD11289.1| OmpA/MotB [Frankia sp. CcI3]
          Length = 363

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P   + L ++   L     V+ + GH DAS     A  N  LSLDRA      L   GV 
Sbjct: 269 PPARLWLDRVAAALRAGRVVVLVGGHADAS---GSATLNQALSLDRAQVIADYLTDRGVR 325

Query: 306 EDRISKISGFAHHRLKIA--SDPMN-SANRRIDIL 337
            D I +++GF   R  +A  + P   +ANRR++I+
Sbjct: 326 PDLI-RVAGFG-SRWPVADNATPRGRAANRRVEIV 358


>gi|66770081|ref|YP_244843.1| hypothetical protein XC_3783 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|77747955|ref|NP_639058.2| hypothetical protein XCC3712 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188993294|ref|YP_001905304.1| hypothetical protein xccb100_3899 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66575413|gb|AAY50823.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167735054|emb|CAP53266.1| OmpA family protein [Xanthomonas campestris pv. campestris]
          Length = 215

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR-- 282
           I  R + +F  +S    PE   VL+ +     E L    E++ I G TD  P  +  R  
Sbjct: 85  IGIRGSVLFALNSDQLQPEGREVLKSLAAPLSEYLVSREEILMISGFTDDRPVLDSNRRY 144

Query: 283 -DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336
            DNW LS  RA +  + L+  GV    +   +  +   +   +D    A NRR++I
Sbjct: 145 ADNWELSAQRALTVTRALIAEGVPASSVFAAAFGSQQPVDSNADETRRAKNRRVEI 200


>gi|224540643|ref|ZP_03681182.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517715|gb|EEF86820.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 299

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--- 267
           ++KGV++        IS+ D     M  KS S  + E      + GE L+   ++I+   
Sbjct: 155 VLKGVVY--------ISLADN----MLYKSGSYEINE------RAGETLSKIAKIITDYK 196

Query: 268 -----IRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRL 320
                + G+TD  P  R   R+NW LS  RA S  Q L  K GV   R+S      ++ +
Sbjct: 197 DYEVLVEGNTDNVPISRTNIRNNWDLSALRASSVVQELQNKYGVDPKRLSAAGRGEYNPI 256

Query: 321 KIASDPMNSA-NRRIDILVEDR 341
                 +    NRR  I+V  R
Sbjct: 257 TDNDSELGKQRNRRTQIIVTPR 278


>gi|270285686|ref|ZP_06195080.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
 gi|270289694|ref|ZP_06195996.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Weiss]
 gi|301337081|ref|ZP_07225283.1| peptidoglycan-associated lipoprotein [Chlamydia muridarum
           MopnTet14]
          Length = 188

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           RN      S SI   + + +L  +   L  S +  + I GHTD    R  A  N  L   
Sbjct: 80  RNITFATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGAR 136

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           RA +  Q L+K G++ DR+  IS    H +    + +    NRR +  +  R
Sbjct: 137 RANAVKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 188


>gi|15835503|ref|NP_297262.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
 gi|7190917|gb|AAF39684.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
          Length = 202

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           RN      S SI   + + +L  +   L  S +  + I GHTD    R  A  N  L   
Sbjct: 94  RNITFATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGAR 150

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           RA +  Q L+K G++ DR+  IS    H +    + +    NRR +  +  R
Sbjct: 151 RANAVKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 202


>gi|325953930|ref|YP_004237590.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323436548|gb|ADX67012.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 284

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV-ISI 268
           ++KGV++        IS+ D     M  KS S  + P     L KI +++    +  + I
Sbjct: 146 VLKGVVY--------ISLADN----MLYKSGSYEISPAAGETLSKIAKIIKDYRDYDVLI 193

Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI-ASD 325
            G+TD  P  R   R+NW LS  RA S  Q L  + GV   R++      ++ +   A++
Sbjct: 194 EGNTDNVPINRPNIRNNWDLSALRASSVVQALQNQYGVDPKRLTAGGRGEYNPVTTNATE 253

Query: 326 PMNSANRRIDILV 338
              S NRR  I++
Sbjct: 254 EGKSKNRRTQIII 266


>gi|347163|gb|AAA62423.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293
           FD   S+  P +   ++ + + +A +    + + GHTD+     +  D  N +LS  RA 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335
           +  QVL+K GV+  R++ + G+   R     A++   + NRR++
Sbjct: 273 AVKQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 315


Searching..................................................done


Results from round 2




>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040206|gb|ACT57002.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD
Sbjct: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ
Sbjct: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK
Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS
Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM
Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG
Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343


>gi|306841271|ref|ZP_07473982.1| flagellar motor protein MotB [Brucella sp. BO2]
 gi|306845424|ref|ZP_07477998.1| flagellar motor protein MotB [Brucella sp. BO1]
 gi|306274167|gb|EFM55983.1| flagellar motor protein MotB [Brucella sp. BO1]
 gi|306288673|gb|EFM60004.1| flagellar motor protein MotB [Brucella sp. BO2]
          Length = 366

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125
           FNP    LM         +N  +R    K+    D+ +   TK   D  +   + +++ Q
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182
                   L+          + +   + G     S           + F P     K   
Sbjct: 122 LFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181

Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217
                                K+ +  ++L   +    +G  A N  K         V  
Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF
Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPF 301

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI 
Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361

Query: 338 VEDR 341
           ++ +
Sbjct: 362 IKSK 365


>gi|23500858|ref|NP_700298.1| flagellar motor protein MotB [Brucella suis 1330]
 gi|163845462|ref|YP_001623117.1| flagellar motor protein MotB [Brucella suis ATCC 23445]
 gi|225628433|ref|ZP_03786467.1| Protein mbhA [Brucella ceti str. Cudo]
 gi|254711223|ref|ZP_05173034.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|254711824|ref|ZP_05173635.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|254714893|ref|ZP_05176704.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|256015903|ref|YP_003105912.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|256030148|ref|ZP_05443762.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
 gi|256059799|ref|ZP_05449994.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|256158327|ref|ZP_05456231.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|256252739|ref|ZP_05458275.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|260166800|ref|ZP_05753611.1| flagellar motor protein MotB [Brucella sp. F5/99]
 gi|261216582|ref|ZP_05930863.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|261219818|ref|ZP_05934099.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|261318815|ref|ZP_05958012.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|261319452|ref|ZP_05958649.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|261323779|ref|ZP_05962976.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|261756178|ref|ZP_05999887.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|265987178|ref|ZP_06099735.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
 gi|265996841|ref|ZP_06109398.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|23464523|gb|AAN34303.1| chemotaxis motB protein [Brucella suis 1330]
 gi|163676185|gb|ABY40295.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|225616279|gb|EEH13327.1| Protein mbhA [Brucella ceti str. Cudo]
 gi|255998563|gb|ACU50250.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260918402|gb|EEX85055.1| flagellar motor protein MotB [Brucella ceti B1/94]
 gi|260921671|gb|EEX88239.1| flagellar motor protein MotB [Brucella ceti M13/05/1]
 gi|261292142|gb|EEX95638.1| flagellar motor protein MotB [Brucella ceti M644/93/1]
 gi|261298038|gb|EEY01535.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94]
 gi|261299759|gb|EEY03256.1| flagellar motor protein MotB [Brucella neotomae 5K33]
 gi|261736162|gb|EEY24158.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|262551138|gb|EEZ07299.1| flagellar motor protein MotB [Brucella ceti M490/95/1]
 gi|264659375|gb|EEZ29636.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1]
          Length = 366

 Score =  270 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         +N  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|294852974|ref|ZP_06793646.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
 gi|294818629|gb|EFG35629.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
          Length = 366

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         +N  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEKRQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|161621187|ref|YP_001595073.1| flagellar motor protein MotB [Brucella canis ATCC 23365]
 gi|254702390|ref|ZP_05164218.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
 gi|260568709|ref|ZP_05839178.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261752951|ref|ZP_05996660.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
 gi|161337998|gb|ABX64302.1| Protein mbhA [Brucella canis ATCC 23365]
 gi|260155374|gb|EEW90455.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261742704|gb|EEY30630.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686]
          Length = 366

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         +N  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSTRAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|306840141|ref|ZP_07472926.1| flagellar motor protein MotB [Brucella sp. NF 2653]
 gi|306404786|gb|EFM61080.1| flagellar motor protein MotB [Brucella sp. NF 2653]
          Length = 366

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125
           FNP    LM         +N  +R    K+    D+ +   TK   D  +   + +++ Q
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182
                   L+          + +   + G     S           + F P     K   
Sbjct: 122 LFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181

Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217
                                K+ +  ++L   +    +G  A N  K         V  
Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF
Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARPF 301

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI 
Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361

Query: 338 VEDR 341
           ++ +
Sbjct: 362 IKSK 365


>gi|254720768|ref|ZP_05182579.1| flagellar motor protein MotB [Brucella sp. 83/13]
 gi|265985826|ref|ZP_06098561.1| flagellar motor protein MotB [Brucella sp. 83/13]
 gi|264664418|gb|EEZ34679.1| flagellar motor protein MotB [Brucella sp. 83/13]
          Length = 366

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125
           FNP    LM         +N  +R    K+    D+ +   TK   D  +   + +++ Q
Sbjct: 66  FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182
                   L+          + +   + G     S           + F P     K   
Sbjct: 122 LFREPYAMLAELAHETGVLQNQSVKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181

Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217
                                K+ +  ++L   +    +G  A N  K         V  
Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF
Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARPF 301

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI 
Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361

Query: 338 VEDR 341
           ++ +
Sbjct: 362 IKSK 365


>gi|256112172|ref|ZP_05453093.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
 gi|265993598|ref|ZP_06106155.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
 gi|262764468|gb|EEZ10500.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether]
          Length = 366

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         QN  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S+          + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSSSGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|254695098|ref|ZP_05156926.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
 gi|261215449|ref|ZP_05929730.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
 gi|260917056|gb|EEX83917.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya]
          Length = 366

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 158/362 (43%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         QN  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|17988498|ref|NP_541131.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. 16M]
 gi|256042871|ref|ZP_05445817.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564108|ref|ZP_05834593.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265989306|ref|ZP_06101863.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984289|gb|AAL53395.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151751|gb|EEW86844.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262999975|gb|EEZ12665.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1]
          Length = 366

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    L+         QN  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLIDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|319409174|emb|CBI82818.1| putative flagellar motor protein MotB [Bartonella schoenbuchensis
           R1]
          Length = 396

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 29/364 (7%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             +  Q + + II+++    D   ++ G+WKI YADF+T +MAFFLVMW++NA D++T++
Sbjct: 2   KSEDEQSHSEIIIVRRGGHDDHDEHHGGAWKIAYADFVTAMMAFFLVMWLVNAKDEETRE 61

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           AI  YFNP        S     ++N  E      +  +        S ++++ S  + + 
Sbjct: 62  AIANYFNPIKLTDSQTSSRSIQKKNDVEDDKICPVGQTCGGD--SKSENVQLVSLEETEL 119

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFLPPLS 179
            +   + +  +  SQQ+     SL     K + L  ++  +      +    + F P   
Sbjct: 120 MRDPYSGLDKIVQSQQNVQNMQSLPDSDGKHETLMGNSKGDSKENLPVTDYRDPFSPHYW 179

Query: 180 KEKILA-----------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT------ 222
           KE + +            K  +  Q LA++ + +         +  ++ E T        
Sbjct: 180 KENVASHNNTLNAQGIEWKEGQAQQQLAQEDAPSQESRDFAKELADLIKEITDENHLSAS 239

Query: 223 ------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G++I ++DQ    MF   SS+P  +T+  + +I +V+A     + + GHTDA P
Sbjct: 240 VLPIREGVMIELMDQPEYEMFKVGSSVPTAQTVEFIDRIAKVIAKHPGNVVVGGHTDARP 299

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +R+  RDNW+LS  RA   Y +L++ G+ E RI ++ G+A   LK   DP  S NRR  I
Sbjct: 300 YRSTTRDNWQLSTSRAQMVYYMLVRGGLDEKRILRVEGYADRNLKNKQDPYASENRRTSI 359

Query: 337 LVED 340
            V D
Sbjct: 360 FVRD 363


>gi|225686890|ref|YP_002734862.1| flagellar motor protein MotB [Brucella melitensis ATCC 23457]
 gi|256261973|ref|ZP_05464505.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642995|gb|ACO02908.1| Protein mbhA [Brucella melitensis ATCC 23457]
 gi|263091457|gb|EEZ15993.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326411308|gb|ADZ68372.1| flagellar motor protein MotB [Brucella melitensis M28]
 gi|326554597|gb|ADZ89236.1| flagellar motor protein MotB [Brucella melitensis M5-90]
          Length = 366

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 158/362 (43%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVVSY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         QN  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +     G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAAIGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|167571659|ref|ZP_02364533.1| flagellar motor protein MotB [Burkholderia oklahomensis C6786]
          Length = 340

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   ++ G+T +      L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSIEAGATRRTDGSTSL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + I   S  +     + SL R                                     +
Sbjct: 109 ADRIVKKSEDEALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQARLHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|153011513|ref|YP_001372727.1| flagellar motor protein MotB [Ochrobactrum anthropi ATCC 49188]
 gi|151563401|gb|ABS16898.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 371

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 42/369 (11%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQY 124
           FNP    +  ++SKG+ D +         K+    D+ I   TK   D  +   + +++ 
Sbjct: 66  FNPVKLMDRHSSSKGVQDVE-----EKDGKVRYESDQKIENSTKVINDTTVAPPSDQEER 120

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           Q        LS          + +   + G          +      + F P     K +
Sbjct: 121 QLFREPYAVLSELAHETGVLQNQSAKGDGGTSQSGPATGAEGGEAYRDPFSPDYWSSKAV 180

Query: 185 -----------------------------AMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
                                        A  +++ + DL K      +   A+      
Sbjct: 181 DDLTPPDAAPAAPPKPETAQPKPEETAKPAETQEQLIADLKKAAEGEAAKEGAEAKKAEP 240

Query: 216 LFETT----RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           + + T      G++I + D+ +  MF   S+ P    + +L++I +V++     + I GH
Sbjct: 241 MPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQPGEVIISGH 300

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TDA PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K ASDP  + N
Sbjct: 301 TDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNASDPNAAEN 360

Query: 332 RRIDILVED 340
           RRIDI ++ 
Sbjct: 361 RRIDIFLKS 369


>gi|167564510|ref|ZP_02357426.1| flagellar motor protein MotB [Burkholderia oklahomensis EO147]
          Length = 340

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   ++ G+T +      L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSIEAGATRRTDGSTSL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + I   S  +     + SL R                                     +
Sbjct: 109 ADRIVKKSEDEALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|239834431|ref|ZP_04682759.1| Protein mbhA [Ochrobactrum intermedium LMG 3301]
 gi|239822494|gb|EEQ94063.1| Protein mbhA [Ochrobactrum intermedium LMG 3301]
          Length = 379

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 165/377 (43%), Gaps = 50/377 (13%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65

Query: 69  FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQY 124
           FNP    +  ++ KG+ D +         K+    D+ I   TK   D  +   +++++ 
Sbjct: 66  FNPVKLMDRHSSPKGVQDVE-----EKDGKVRYESDQKIENSTKVINDTTVAPPSEQEER 120

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           Q        LS          + +   + G                 + F P     K +
Sbjct: 121 QLFREPYAVLSELAHETGVLQNQSAKGDGGTSKSGPATGADGGEAYRDPFSPDYWSSKAV 180

Query: 185 -------------------------------------AMKRKKRLQDLAK----KISSTL 203
                                                A K+++ + DL K    + +   
Sbjct: 181 EDLTPPDAAPATPPRPEAAQPKPEEAAKPAEAPADTPAEKQEQLIADLKKAAEGETAKEG 240

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +       +  V       G++I + D+ +  MF   S+ P    + +L++I +V++   
Sbjct: 241 TAAKKAEPMPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQP 300

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + I GHTDA PF++   DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K A
Sbjct: 301 GEVIISGHTDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNA 360

Query: 324 SDPMNSANRRIDILVED 340
           +DP  + NRRIDI ++ 
Sbjct: 361 NDPNAAENRRIDIFLKS 377


>gi|330815146|ref|YP_004358851.1| MotB [Burkholderia gladioli BSR3]
 gi|327367539|gb|AEA58895.1| MotB [Burkholderia gladioli BSR3]
          Length = 361

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  YFN   K 
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +          N    S  + I       IT++                          
Sbjct: 69  ALFG--------NGDRSSHDSSIINGGGSDITRS-----------------------DSG 97

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +++++       R ++ G+D     D                        + + RL DL
Sbjct: 98  TTRRTDGSTMLANRLTQAGRDDEHDVD------------------RGSQDRQEQVRLHDL 139

Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             K+ + +    V     + +  ++T TG+ I I+D +  PMF  SS    P    +L++
Sbjct: 140 QIKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDTQKRPMFALSSDAVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 200 IGKTLNDVPNRIVMQGHTDAVPYSGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +G A  +    +DP++  NRRI ILV +R+
Sbjct: 260 TGLASTQNLNKADPLDPENRRISILVLNRK 289


>gi|76809964|ref|YP_331496.1| flagellar motor protein MotB [Burkholderia pseudomallei 1710b]
 gi|126438376|ref|YP_001060851.1| flagellar motor protein MotB [Burkholderia pseudomallei 668]
 gi|126452767|ref|YP_001068158.1| flagellar motor protein MotB [Burkholderia pseudomallei 1106a]
 gi|134281430|ref|ZP_01768138.1| chemotaxis protein MotB [Burkholderia pseudomallei 305]
 gi|167721693|ref|ZP_02404929.1| flagellar motor protein MotB [Burkholderia pseudomallei DM98]
 gi|167740671|ref|ZP_02413445.1| flagellar motor protein MotB [Burkholderia pseudomallei 14]
 gi|167826260|ref|ZP_02457731.1| flagellar motor protein MotB [Burkholderia pseudomallei 9]
 gi|167847768|ref|ZP_02473276.1| flagellar motor protein MotB [Burkholderia pseudomallei B7210]
 gi|167896356|ref|ZP_02483758.1| flagellar motor protein MotB [Burkholderia pseudomallei 7894]
 gi|167904730|ref|ZP_02491935.1| flagellar motor protein MotB [Burkholderia pseudomallei NCTC 13177]
 gi|167913010|ref|ZP_02500101.1| flagellar motor protein MotB [Burkholderia pseudomallei 112]
 gi|167920947|ref|ZP_02508038.1| flagellar motor protein MotB [Burkholderia pseudomallei BCC215]
 gi|217423951|ref|ZP_03455451.1| chemotaxis protein MotB [Burkholderia pseudomallei 576]
 gi|226193238|ref|ZP_03788848.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9]
 gi|237814248|ref|YP_002898699.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346]
 gi|242314580|ref|ZP_04813596.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b]
 gi|254183890|ref|ZP_04890481.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655]
 gi|254186366|ref|ZP_04892883.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237]
 gi|254261280|ref|ZP_04952334.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a]
 gi|254298791|ref|ZP_04966242.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e]
 gi|42766714|gb|AAS45440.1| MotB [Burkholderia pseudomallei]
 gi|76579417|gb|ABA48892.1| MotB [Burkholderia pseudomallei 1710b]
 gi|126217869|gb|ABN81375.1| chemotaxis protein MotB [Burkholderia pseudomallei 668]
 gi|126226409|gb|ABN89949.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106a]
 gi|134247097|gb|EBA47183.1| chemotaxis protein MotB [Burkholderia pseudomallei 305]
 gi|157808693|gb|EDO85863.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e]
 gi|157934051|gb|EDO89721.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237]
 gi|184214422|gb|EDU11465.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655]
 gi|217393014|gb|EEC33036.1| chemotaxis protein MotB [Burkholderia pseudomallei 576]
 gi|225934838|gb|EEH30815.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9]
 gi|237506677|gb|ACQ98995.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346]
 gi|242137819|gb|EES24221.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b]
 gi|254219969|gb|EET09353.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a]
          Length = 340

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   L  G+T +      L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSTHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +   S        + SL R                                     +
Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|53720918|ref|YP_109904.1| flagellar motor protein MotB [Burkholderia pseudomallei K96243]
 gi|167817882|ref|ZP_02449562.1| flagellar motor protein MotB [Burkholderia pseudomallei 91]
 gi|52211332|emb|CAH37321.1| chemotaxis protein MotB [Burkholderia pseudomallei K96243]
          Length = 340

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   L  G+T +      L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSTHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +   S        + SL R                                     +
Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|83721243|ref|YP_443678.1| flagellar motor protein MotB [Burkholderia thailandensis E264]
 gi|167582718|ref|ZP_02375592.1| flagellar motor protein MotB [Burkholderia thailandensis TXDOH]
 gi|83655068|gb|ABC39131.1| chemotaxis protein MotB [Burkholderia thailandensis E264]
          Length = 344

 Score =  259 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   +  G+T        L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDSSIIKGGGRDISSVDAGTTRLTDGSTHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +   S        + SL R                                     +
Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQIRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|221214225|ref|ZP_03587197.1| flagellar motor protein [Burkholderia multivorans CGD1]
 gi|221165880|gb|EED98354.1| flagellar motor protein [Burkholderia multivorans CGD1]
          Length = 338

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 50/335 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  +  I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YF
Sbjct: 3   KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   +  +  S              ++  D SI     ++   +  G+  +     +L  
Sbjct: 63  NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQLAE 110

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +                     K  D      ++ ++ + E   L  L  + + A++  
Sbjct: 111 RV--------------------AKPADDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L+   ++I                  ++T  G+ I I+D +  PMF  SS    P   
Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMR 194

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E 
Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|254250906|ref|ZP_04944224.1| Flagellar motor protein [Burkholderia dolosa AUO158]
 gi|124893515|gb|EAY67395.1| Flagellar motor protein [Burkholderia dolosa AUO158]
          Length = 339

 Score =  259 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   +  G+  +      L
Sbjct: 61  YFNTPLKAALFGS------------GDRSSQDSSIIDGGGRDLSSVDAGTLRRTDGTTNL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + +   ++       + +L R                                     +
Sbjct: 109 ADRVAKKNDEDAQAQAQGALER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDHVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|254194681|ref|ZP_04901112.1| chemotaxis protein MotB [Burkholderia pseudomallei S13]
 gi|169651431|gb|EDS84124.1| chemotaxis protein MotB [Burkholderia pseudomallei S13]
          Length = 340

 Score =  259 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   L  G+T +      L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSAHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +   S        + SL R                                     +
Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|167620832|ref|ZP_02389463.1| flagellar motor protein MotB [Burkholderia thailandensis Bt4]
          Length = 348

 Score =  259 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V      ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   +  G+T        L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDSSIIKGGGRDISSVDAGTTRLTDGSTHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +   S        + SL R                                     +
Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQIRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|83593178|ref|YP_426930.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83576092|gb|ABC22643.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 360

 Score =  259 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 19/333 (5%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ IIIK+ +      ++ G+WK+ YADF+T +MAFFL++W++N+  ++    I  YF P
Sbjct: 3   DQPIIIKR-IKKGGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYFAP 61

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
              +   +  G           +      S    +T     +  G  +     + ++ + 
Sbjct: 62  TAVSQSPSGAGGVLGGQVLGEGASQSNSSSPAVQLTLPPPTIGAGGQDFSDANEGVDASD 121

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                 +  E    S       GK   + TD + +  +E+               ++++ 
Sbjct: 122 SDDDAGK-GEGKGASAGDLEGLGKLGVEPTDKQLAAAEEK---------------RQQEE 165

Query: 192 LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
               A ++   +  + +   +   +L + T  G+ I +ID+    MF   SS  LP T  
Sbjct: 166 FNKTATELRQAIQAVPSLQALSNSLLIDNTPEGLRIQLIDREGLSMFPTGSSALLPHTRD 225

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L  + + +A     ISI GHTDA P+ +     NW LS DRA ++ +VL+ +G+ EDR+
Sbjct: 226 LLALVAKAVADVPNKISISGHTDAPPYSDPSGYGNWELSADRALASRRVLLANGLKEDRV 285

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G A     +A DP   +NRRI I +   +
Sbjct: 286 DRVVGKAETEPLLADDPKAPSNRRIAITLLRDR 318


>gi|238025855|ref|YP_002910086.1| flagellar motor protein MotB [Burkholderia glumae BGR1]
 gi|124695899|gb|ABN14293.1| MotB [Burkholderia glumae BGR1]
 gi|124695929|gb|ABN14297.1| MotB [Burkholderia glumae BGR1]
 gi|237875049|gb|ACR27382.1| MotB [Burkholderia glumae BGR1]
          Length = 349

 Score =  258 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 52/330 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  YFN   K 
Sbjct: 9   IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +          N    S  + I       IT++       +        RL        
Sbjct: 69  ALFG--------NGDRSSHDSSIIQGGGSDITRSDAGTTRRTDGTTMLASRL-------- 112

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                          ++KG+D    TD       E                  + RL DL
Sbjct: 113 ---------------AQKGRDDLHDTDPGSQDRAE------------------QARLHDL 139

Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             K+ + +    V     + +  ++T +G+ I I+D +  PMF  +S++  P    +L++
Sbjct: 140 QIKLMAAIEANPVLRQFKQQIRIDSTLSGLRIEIVDTQKRPMFATASNMVEPYMRDILRE 199

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ + ++ ++
Sbjct: 200 IGKTLNEVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELISGGMDDAKVLRV 259

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +G A  +    +DP +  NRRI ILV + +
Sbjct: 260 TGLASTQNLNKADPFDPENRRISILVLNHK 289


>gi|295678083|ref|YP_003606607.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295437926|gb|ADG17096.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 336

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+        ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 3   SKDKDRAIVVKRSAPRKH-GHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN                          KI L   +   ++S  LK G  +     Q +
Sbjct: 62  YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 98

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +    SN  +    +N+     +                            +  L  +
Sbjct: 99  TRSTDGSSNRAERTASRNNEDSVKQ---------------------------LQGELERR 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +  +  P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELVAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +++
Sbjct: 252 DEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNKK 289


>gi|167587857|ref|ZP_02380245.1| flagellar motor protein MotB [Burkholderia ubonensis Bu]
          Length = 340

 Score =  258 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   +  +  S              ++  D SI     ++   +  GST +      L
Sbjct: 61  YFNTPLQAALFGS------------GDRSSQDSSIINGGGRDISSVDAGSTRRTDGSTSL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + +   ++ +     + SL R                                     +
Sbjct: 109 ADRVAKKNDDEAQAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDSQKRPMFAMSSDHVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 252 DESKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|221202105|ref|ZP_03575140.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221209087|ref|ZP_03582082.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221171082|gb|EEE03534.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221177899|gb|EEE10311.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 338

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 50/335 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  +  I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YF
Sbjct: 3   KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   +  +  S              ++  D SI     ++   +  G+  +     +L  
Sbjct: 63  NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQLAE 110

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +                     K  D      ++ ++ + E   L  L  + + A++  
Sbjct: 111 RV--------------------AKPTDDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L+   ++I                  ++T  G+ I I+D +  PMF  SS    P   
Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMR 194

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E 
Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|161523343|ref|YP_001578355.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616]
 gi|189351884|ref|YP_001947512.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616]
 gi|160340772|gb|ABX13858.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189335906|dbj|BAG44976.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
          Length = 338

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 147/335 (43%), Gaps = 50/335 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  +  I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YF
Sbjct: 3   KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   +  +  S              ++  D SI     ++      G+  +     +L  
Sbjct: 63  NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDGTTQLAE 110

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +                     K  D      ++ ++ + E   L  L  + + A++  
Sbjct: 111 RV--------------------AKPADDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L+   ++I                  ++T  G+ I I+D +  PMF  SS    P   
Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMR 194

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E 
Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|62317962|ref|YP_223815.1| flagellar motor protein MotB [Brucella abortus bv. 1 str. 9-941]
 gi|83269939|ref|YP_419230.1| flagellar motor protein MotB [Brucella melitensis biovar Abortus
           2308]
 gi|189023213|ref|YP_001932954.1| flagellar motor protein MotB [Brucella abortus S19]
 gi|237817509|ref|ZP_04596499.1| Protein mbhA [Brucella abortus str. 2308 A]
 gi|254691605|ref|ZP_05154859.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|254698194|ref|ZP_05160022.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731639|ref|ZP_05190217.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|256256793|ref|ZP_05462329.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|260544147|ref|ZP_05819968.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260757237|ref|ZP_05869585.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|260759398|ref|ZP_05871746.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|260762641|ref|ZP_05874973.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883041|ref|ZP_05894655.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|297250146|ref|ZP_06933847.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|62198155|gb|AAX76454.1| MotB, chemotaxis protein [Brucella abortus bv. 1 str. 9-941]
 gi|82940213|emb|CAJ13269.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308]
 gi|189021787|gb|ACD74508.1| OmpA/MotB domain protein [Brucella abortus S19]
 gi|237787264|gb|EEP61482.1| Protein mbhA [Brucella abortus str. 2308 A]
 gi|260097418|gb|EEW81292.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260669716|gb|EEX56656.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292]
 gi|260673062|gb|EEX59883.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677345|gb|EEX64166.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870]
 gi|260872569|gb|EEX79638.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68]
 gi|297174015|gb|EFH33379.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
          Length = 366

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 31/362 (8%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+  Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         QN  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 66  FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++  + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DN RLS  RA  AY +L++ G+ E R+ ++ G+A    K  +DP  + NRRIDI ++
Sbjct: 304 ATYDNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIK 363

Query: 340 DR 341
            +
Sbjct: 364 SK 365


>gi|253998520|ref|YP_003050583.1| flagellar motor protein MotB [Methylovorus sp. SIP3-4]
 gi|313200598|ref|YP_004039256.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|253985199|gb|ACT50056.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
 gi|312439914|gb|ADQ84020.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 316

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+ + II+K+   +    ++ G+WKI YADF+T +MAFFL+MW++ +T   T + I +YF
Sbjct: 3   EDTKPIIVKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKATLEGISEYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +     +    +         +     + +TK    +K     + KQ      
Sbjct: 62  KMPLKVALQGGPSVAASDS---------VLKGGGKDLTKKQAQVKPVDGPKGKQ------ 106

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                        K  D++ +    E                 +
Sbjct: 107 -----------------------------KEVDIKDAKTALEKA--------------EQ 123

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L +L  KI   + +        K +L + T  G+ I I+D++N PMF  S +   P  
Sbjct: 124 EKLAELKLKIEEAIDASATLSKFKKQLLIDITSEGLRIQIVDEQNRPMFASSKAELQPYA 183

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L +IG +L      IS+ GHTDA P+        NW LS DRA ++ + L+  G+ E
Sbjct: 184 KQILHEIGSMLNDVPNKISLSGHTDAVPYPTGDKGYSNWELSSDRANASRRELVAGGMDE 243

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ ++ G +   L    +P+N  NRRI I++ +++ 
Sbjct: 244 SKLLRVVGLSSASLFDKENPLNPVNRRISIIIMNKKA 280


>gi|78064833|ref|YP_367602.1| flagellar motor protein MotB [Burkholderia sp. 383]
 gi|77965578|gb|ABB06958.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 338

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 147/338 (43%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPSKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQMKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI     ++   +  G+  +     +L
Sbjct: 61  YFNTPLKAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +  + +       + +  R                                      
Sbjct: 109 AERLAKVGDEHSRSQEQGAQDRL------------------------------------- 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS    P
Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDNVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYSGGEGGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|206558533|ref|YP_002229293.1| flagellar motor protein MotB [Burkholderia cenocepacia J2315]
 gi|198034570|emb|CAR50435.1| chemotaxis protein MotB [Burkholderia cenocepacia J2315]
          Length = 339

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 51/337 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI     ++   +  G+  +       
Sbjct: 61  YFNMPLKAAILGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDG---- 104

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                             SL     K  D    +  + + ++ E   L  L  + + A++
Sbjct: 105 ----------------TTSLAERLAKAGDENSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L+   ++I                  ++T  G+ I I+D +  PMF  SS    P 
Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDRVEPY 192

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ 
Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|254246760|ref|ZP_04940081.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
 gi|124871536|gb|EAY63252.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
          Length = 339

 Score =  256 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 51/337 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI     ++   +  G+  +       
Sbjct: 61  YFNMPLKAAILGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDG---- 104

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                             SL     K  D    +  + + ++ E   L  L  + + A++
Sbjct: 105 ----------------TTSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L+   ++I                  ++T  G+ I I+D +  PMF  SS    P 
Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPY 192

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ 
Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|167838309|ref|ZP_02465168.1| flagellar motor protein MotB [Burkholderia thailandensis MSMB43]
          Length = 488

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  DQ II+K+ V+     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I  
Sbjct: 2   SKGKDQAIIVKR-VSQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI +   ++   ++ G+T        L
Sbjct: 61  YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSVEAGATRLTDGSTHL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + +   S        + SL R                                     +
Sbjct: 109 ADRVAKKSEDDALAQAQGSLER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS+   P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSNAVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289


>gi|107024396|ref|YP_622723.1| flagellar motor protein MotB [Burkholderia cenocepacia AU 1054]
 gi|116688278|ref|YP_833901.1| flagellar motor protein MotB [Burkholderia cenocepacia HI2424]
 gi|170731591|ref|YP_001763538.1| flagellar motor protein MotB [Burkholderia cenocepacia MC0-3]
 gi|105894585|gb|ABF77750.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116646367|gb|ABK07008.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|169814833|gb|ACA89416.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 339

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 51/337 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S                  D S  E    N     + S +     +  
Sbjct: 61  YFNMPLKAAILGSG-----------------DRSSQESSIINGGGRDLSSVDAGTLRR-- 101

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                             SL     K  D    +  + + ++ E   L  L  + + A++
Sbjct: 102 -------------TDGTTSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L+   ++I                  ++T  G+ I I+D +  PMF  SS    P 
Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPY 192

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ 
Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|89068739|ref|ZP_01156125.1| MotB [Oceanicola granulosus HTCC2516]
 gi|89045702|gb|EAR51764.1| MotB [Oceanicola granulosus HTCC2516]
          Length = 345

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 143/335 (42%), Gaps = 5/335 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
              Q III++        ++ G WK+ YADFMT +MAFFL+MWII A+D++  + I  YF
Sbjct: 3   SEKQPIIIRRMTEDAHDGHHGGGWKVAYADFMTAMMAFFLLMWIIAASDEEKLRGIADYF 62

Query: 70  NPFGKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            P       A  G+ D +    + +    +   +     +N +++    T +        
Sbjct: 63  TPSLVTADGAGSGLLDGEAVEGQGTRGGGVVPELPSFGQENPLEISANRTPEAPSVIVEY 122

Query: 129 NNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +  L +   +  H       D E        +  E S  +              LA +
Sbjct: 123 VPVEDLGDDPFARLHAAAGEVVDGETTPLDGAGSAPEASEGEAGTAASEAALAAAELAEQ 182

Query: 188 RKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           R   L+ L  ++   ++         + +L + T  G+   I+D     MF   S+    
Sbjct: 183 RAAALEVLRGEVEERIAEDPELATFAENLLVDATDLGLRFQIVDHEGVAMFRSGSAEIEE 242

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGV 304
            T  ++  +GE +      ++I GHTD+ PF        NW LS DRA +A + L+ +GV
Sbjct: 243 STRELIGVVGETIRGLPYPVAITGHTDSVPFSGARDGYSNWELSADRANAARRTLIAAGV 302

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              RI +ISG A   L++   P    NRRI++L++
Sbjct: 303 DAARIVEISGLAATELRVPDIPDAPENRRIEVLMQ 337


>gi|171322726|ref|ZP_02911473.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171091928|gb|EDT37395.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 339

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S              ++  D SI     ++      G+  +               
Sbjct: 69  ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D    +  + + ++ E   L  L  + + A++    L+  
Sbjct: 105 --------TTSLADRVAKAGDQNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|172059245|ref|YP_001806897.1| flagellar motor protein MotB [Burkholderia ambifaria MC40-6]
 gi|171991762|gb|ACB62681.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 339

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S              ++  D SI     ++      G+  +               
Sbjct: 69  ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D       + + ++ E   L  L  + + A++    L+  
Sbjct: 105 --------TTSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++S NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDSENRRISVIVLNRK 289


>gi|115350223|ref|YP_772062.1| flagellar motor protein MotB [Burkholderia ambifaria AMMD]
 gi|115280211|gb|ABI85728.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 339

 Score =  255 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S              ++  D SI     ++      G+  +               
Sbjct: 69  ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D       + + ++ E   L  L  + + A++    L+  
Sbjct: 105 --------TTSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDESKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|170703865|ref|ZP_02894555.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170131226|gb|EDS99863.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 339

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K+VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +YFN   K 
Sbjct: 9   IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +  S              ++  D SI     ++      G+  +               
Sbjct: 69  ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL     K  D    +  + + ++ E   L  L  + + A++    L+  
Sbjct: 105 --------TTSLADRVAKAGDQNSRSQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++I                  ++T  G+ I I+D +  PMF  SS    P    +L++I
Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ 
Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           G A  +    +DP++  NRRI ++V +R+
Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|2275156|gb|AAB81408.1| MotB [Sinorhizobium meliloti]
          Length = 394

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 181/397 (45%), Gaps = 57/397 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK AI  YFNP        ++    +     +  Q +    +D   TK+    K G    
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118

Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
               +                          E NI    +   ++   ++     E  +D
Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178

Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186
                                           ++    +  +K E        + +  A 
Sbjct: 179 PFDPDFWTKQVEVKDAGNTAESEVASAANSAREAASAPEVPDKAEGAKAADAPENQAPAE 238

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +K  + L  +I   L G  A  +++G+       G+L++I +Q + PMF   S++P  
Sbjct: 239 NPQKEAEALKAEIEKELGGE-AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E
Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +R+ +ISGFA  RL++ +D    ANRRI+IL++  QG
Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394


>gi|209515722|ref|ZP_03264585.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209503749|gb|EEA03742.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 336

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  +     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 3   SKDKDRAIVVKR-ASPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +       ++ +  +   +   D+S D      S D               
Sbjct: 62  YFNQPLKITLWGGDRSAEDSSILKGGGR---DISTDAQGVTRSTD--------------- 103

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                   +S ++EH  +    DS K                           +  L  +
Sbjct: 104 -------GSSSRAEHTASHNNDDSVK-------------------------QLQGALERQ 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +  +  P
Sbjct: 132 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGDKGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 252 DEAKVMRVLGLASAQNLNKADPLDPENRRISIIVLNRK 289


>gi|15964427|ref|NP_384780.1| flagellar motor protein MotB [Sinorhizobium meliloti 1021]
 gi|307311569|ref|ZP_07591210.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|15073604|emb|CAC45246.1| Chemotaxis (motility protein B) transmembrane [Sinorhizobium
           meliloti 1021]
 gi|306899586|gb|EFN30215.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 394

 Score =  254 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 180/397 (45%), Gaps = 57/397 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK AI  YFNP        ++    +     +  Q +    +D   TK+    K G    
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118

Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
               +                          E NI    +   ++   ++     E  +D
Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178

Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186
                                           ++       +K E        + +  A 
Sbjct: 179 PFDPDFWTKQVEVKDAGNTAESDVASAANSAREAASGPGVPDKAEGAKAADAPENQAPAE 238

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +K  + L  +I   L G  A  +++G+       G+L++I +Q + PMF   S++P  
Sbjct: 239 NPQKEAEALKAEIEKELGG-GAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E
Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +R+ +ISGFA  RL++ +D    ANRRI+IL++  QG
Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394


>gi|186477722|ref|YP_001859192.1| flagellar motor protein MotB [Burkholderia phymatum STM815]
 gi|184194181|gb|ACC72146.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 369

 Score =  254 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 56/339 (16%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKGGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFN P    L    +   D    P        D                           
Sbjct: 61  YFNQPLKITLWGGDRSAVDSSQIPGGGRDISTD--------------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                     + Q++   N     + +  D                        +  +  
Sbjct: 94  ------KDGITHQTDGSTNRAEHTAARADDQALQ------------------QLQGAVER 129

Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           + + RL DL  K+ + +    V     + +  ++T  G+ I I+D +  PMF  + +I  
Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLQGLRIEIVDTQKRPMFATAQAIVQ 189

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
           P    +LQ IG  L      I ++GHTDA P+        NW LS DRA ++ + L+  G
Sbjct: 190 PYMHDILQAIGNTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGG 249

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + E ++ ++ G A  +    +DP++  NRRI I+V +++
Sbjct: 250 MDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNKR 288


>gi|254497974|ref|ZP_05110737.1| flagellar motor protein MotB [Legionella drancourtii LLAP12]
 gi|254352751|gb|EET11523.1| flagellar motor protein MotB [Legionella drancourtii LLAP12]
          Length = 293

 Score =  254 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 148/343 (43%), Gaps = 64/343 (18%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+ + +  +E  Q IIIKK V      ++ GSWKI YADF+T +MAFFL+MW+I + +  
Sbjct: 1   MSENENSAKEKSQPIIIKK-VKKHGHAHHGGSWKIAYADFVTAMMAFFLLMWLIASLNKA 59

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I +YF                           K+     + +    + +K G    
Sbjct: 60  QREGIAEYFKQPI-----------------------KVTFFGGKDVGNQQIRVKGGGLQI 96

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           +    ++       S   +                                    P   +
Sbjct: 97  EDTNGQVSTTKMNDSKDAK------------------------------------PQDIE 120

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDK 239
               +  + ++L++L  +I+ ++    + N +K  +L E    G+ I +ID +  PMFD 
Sbjct: 121 VIQSSQTQTQKLEELKSEINLSIQNDPSLNGLKDRMLMEVVHDGLRIQLIDNQKNPMFDV 180

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI---ARDNWRLSLDRAYSAY 296
            S    P+   +  KI ++L      ++I+G+TDA P+ N       NW LS  RA +A 
Sbjct: 181 GSEKLNPQFEPIFTKISKLLNGVPNKVTIQGYTDAHPYHNPDELEYTNWELSTQRANAAR 240

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           + L+K+G+ E+++ K+SGF+        DP N+ NRRI I+V 
Sbjct: 241 RALIKAGLDENKVMKVSGFSSTMPLDKKDPFNAINRRISIIVM 283


>gi|148260894|ref|YP_001235021.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402575|gb|ABQ31102.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 371

 Score =  254 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 14/339 (4%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--FG 73
           +I ++  I +  ++ G+WK+ YADF+T +MAFFL+MW+INAT +  +  +  YF+     
Sbjct: 18  LIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFSQANVL 77

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
               +     F    P ++ + +    ++   +  N V  ++  T Q +Q +        
Sbjct: 78  NRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYQVPHTPQGQQIRPDHPTGND 137

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----- 188
           + N+      K   +  +        + +L+K  +        P  ++            
Sbjct: 138 MVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAPSGEKAAAGTGGAIGGL 197

Query: 189 ------KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                 + R +    +I   ++      ++ K V    T  G+ I I+D    PMF   S
Sbjct: 198 APGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKRPMFALGS 257

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           + P P T+ +L KI  +L+   + I I G+TDA P+    +DNW LS++RA +   VL+K
Sbjct: 258 ARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANATRAVLVK 317

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +G  +  I+++SG+A  +L I S+P+ +ANRR+ ILV  
Sbjct: 318 AGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILVVR 356


>gi|187925787|ref|YP_001897429.1| flagellar motor protein MotB [Burkholderia phytofirmans PsJN]
 gi|187716981|gb|ACD18205.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 335

 Score =  254 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +                                               +  
Sbjct: 61  YFNQPLKITLWGGD-------------------------------------------RSA 77

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           E++       +        +TR SE   +  + +    S +  +         +  L  +
Sbjct: 78  EDSSILKGGGRDISTDAQGVTRSSEGSNNRAEHSAAHGSEDSIKQ-------LQGELERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA+ +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIGGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DPM+  NRRI I+V +R+
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288


>gi|134294329|ref|YP_001118064.1| flagellar motor protein MotB [Burkholderia vietnamiensis G4]
 gi|134137486|gb|ABO53229.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 338

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 53/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSATPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   +  +  S              ++  D SI     ++   +  G+T +      L
Sbjct: 61  YFNTPLQAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTTRRTDGSTSL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            + +            + ++ R                                     +
Sbjct: 109 ADRVAKKGEDTAQAQAQGAIER-------------------------------------R 131

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +          + +  ++T  G+ I I+D +  PMF  SS+   P
Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDSQKRPMFAMSSNNVEP 191

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG+ L      I ++GHTDA P+        NW LS DRA ++ + L+  G+
Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGM 251

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289


>gi|323527738|ref|YP_004229891.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384740|gb|ADX56831.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 335

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A   + ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASSAQLKGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +       ++ +  +   +   D+S D      + D  I  +++   +   
Sbjct: 61  YFNQPLKITLWGGDRSAEDSSILKGGGR---DISTDSQGVTRTSDGSINRSDRTVAHGSE 117

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +                                                    +  L  +
Sbjct: 118 DAM-----------------------------------------------KQLQGELERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA  +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DPM+  NRRI I+V +R+
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288


>gi|307318924|ref|ZP_07598355.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895338|gb|EFN26093.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
          Length = 394

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 181/397 (45%), Gaps = 57/397 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   + N +N+  III ++ A +   ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MNDESNHNGKNE--IIIVRRSADNHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK AI  YFNP        ++    +     +  Q +    +D   TK+    K G    
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118

Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
               +                          E NI    +   ++   ++     E  +D
Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178

Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186
                                           ++    +  +  E        + +  A 
Sbjct: 179 PFDPDFWTKQVEVKDAGNTAERDVASAANSAREAASAPEVPDNAEGAKAADAPENQAPAE 238

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +K  + L  +I   L G  A  +++G+       G+L++I +Q + PMF   S++P  
Sbjct: 239 NPQKEAEALKAEIEKELGGE-AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G+ E
Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +R+ +ISGFA  RL++ +D    ANRRI+IL++  QG
Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394


>gi|326404291|ref|YP_004284373.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301]
 gi|325051153|dbj|BAJ81491.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301]
          Length = 371

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 14/339 (4%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--FG 73
           +I ++  I +  ++ G+WK+ YADF+T +MAFFL+MW+INAT +  +  +  YF+     
Sbjct: 18  LIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFSQANVL 77

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
               +     F    P ++ + +    ++   +  N V  ++  T Q +Q +        
Sbjct: 78  NRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYEVPHTPQGQQIRPDHPTGND 137

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----- 188
           + N+      K   +  +        + +L+K  +        P  ++            
Sbjct: 138 MVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAPSGEKAAAGTGGAIGGL 197

Query: 189 ------KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                 + R +    +I   ++      ++ K V    T  G+ I I+D    PMF   S
Sbjct: 198 APGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKRPMFALGS 257

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           + P P T+ +L KI  +L+   + I I G+TDA P+    +DNW LS++RA +   VL+K
Sbjct: 258 ARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANATRAVLVK 317

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +G  +  I+++SG+A  +L I S+P+ +ANRR+ ILV  
Sbjct: 318 AGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILVVR 356


>gi|296157481|ref|ZP_06840316.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295892253|gb|EFG72036.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 148/338 (43%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +       ++ +  +   +   D+S D      S D               
Sbjct: 61  YFNQPLKVTLWGGDRSAEDSSILKGGGR---DISTDAQGVTRSTD--------------- 102

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                           +   E+S++      +  L  E  L  +
Sbjct: 103 ------------------------------GSNNRSERSVSHNNEDSMKQLQGE--LERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA+ +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DPM+  NRRI I+V +++
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNKK 288


>gi|91776291|ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT]
 gi|91710278|gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 308

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 141/330 (42%), Gaps = 60/330 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +YF    K 
Sbjct: 8   IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISEYFKTPLKV 67

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M    G                     + + K   +       Q ++ + ++       
Sbjct: 68  AMQGGSGA-----------------GASDSVLKGGGNDMTKKQGQIRRAEDIDARKKPDL 110

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            + Q E  K  L +  E  + + ++ D  +++                            
Sbjct: 111 KTAQEEVAKAELEKLKELKRRIEEAIDASETLR--------------------------- 143

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                            K +L + T  G+ I I+D++N PMF  S +   P    +L +I
Sbjct: 144 --------------QFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQPYARQILHEI 189

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G++L      IS+ GHTDA+P+ +      NW LS DRA ++ + L+  G+ E+++ ++ 
Sbjct: 190 GQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGGMKEEKLLRVV 249

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G +   L    +P+N  NRRI I++ +++ 
Sbjct: 250 GLSSAVLFDKDNPLNPINRRISIIIMNKKA 279


>gi|307731388|ref|YP_003908612.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307585923|gb|ADN59321.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 335

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 146/338 (43%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A   + ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +               +  + I       I+ ++  +   +     + +R 
Sbjct: 61  YFNQPLKITLWGG---------DRSAEDSSILKGGGRDISTDAQGVTRSTDGSSNRAERT 111

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            ++    S  Q                                          +  L  +
Sbjct: 112 VSHSNEDSMKQ-----------------------------------------LQGELERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA  +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DP++  NRRI I+V +R+
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNRK 288


>gi|330501613|ref|YP_004378482.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01]
 gi|328915900|gb|AEB56731.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01]
          Length = 334

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 61/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLVMW++++   + K+AI  YF
Sbjct: 2   ENNQPIIVKR-VKKTAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKRAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   +AS    D    P  + +  ++  + E                         
Sbjct: 61  QDPIGFTESASPYAIDLGGTPTPAPERTLNPDVSE------------------------- 95

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                             T +S+  +    +  +E    K E   L  L +E    ++  
Sbjct: 96  ------------------TPESQPDETGVSTDQIETLAEKMEQERLELLLQELQNKVEEN 137

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ    +I                LFE T+ G+ I I+D  N PMF   S+   P   
Sbjct: 138 PELQRFKDQI----------------LFEITQDGLRIQIMDAENRPMFALGSAELQPYFE 181

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA PF       NW LS +RA +A + L+  G  +++
Sbjct: 182 DILLAMADTIRAVPNKISISGHTDAKPFAGRGDFGNWELSSNRANAARRTLVAGGYPDEQ 241

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L   +DP N  NRRIDI+V  ++ 
Sbjct: 242 VARVVGYASSALFDRADPFNPVNRRIDIVVLTKKA 276


>gi|254293721|ref|YP_003059744.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
 gi|254042252|gb|ACT59047.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
          Length = 303

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 42/330 (12%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           ++ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN T  D K+ I  YF P
Sbjct: 4   NRPIVIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPDQKRGIADYFAP 63

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
              +                               ++   D  +G T+ +    R     
Sbjct: 64  ASVSK------------------------------SRQGSDGMLGGTSFQDDGARSGGTN 93

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
             +  S+Q+   + + T+++              S    ++  +   +  K +AM+ +  
Sbjct: 94  RPMPESKQTASKRRTSTKNAGTP-----------SNETNKSKEVSQSAMSKAIAMREQAE 142

Query: 192 LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +   + +   +  +     + K ++ + T  G+ I I+DQ    MF  +S+ PLP    
Sbjct: 143 FERAEQSLRQAMQDMPDLAALSKHLVIDQTPEGMRIQIVDQEGRAMFAAASAKPLPRAEK 202

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  + +V+      +SI GHT   P       NW+LS DRA SA  +L  SG+  DRI 
Sbjct: 203 ILAAVSQVIMKLPNRVSISGHTGDLPTGVEGYSNWQLSSDRANSARSILESSGLDADRIY 262

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++SG A        DP    NRRI I++  
Sbjct: 263 QVSGKAGSEPLYPDDPDLPGNRRISIVLLR 292


>gi|170694367|ref|ZP_02885521.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170140790|gb|EDT08964.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 335

 Score =  251 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I +
Sbjct: 2   SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN                          KI L   +   ++S  LK G  +     Q +
Sbjct: 61  YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 97

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +    +N  +    K+S     +                            +  L  +
Sbjct: 98  TRSTDGSNNRAERTVSKSSEDSMKQ---------------------------LQGELERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA+ +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DPM+  NRRI ++V +R+
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISVIVLNRK 288


>gi|114765236|ref|ZP_01444368.1| OmpA/MotB [Pelagibaca bermudensis HTCC2601]
 gi|114542371|gb|EAU45399.1| OmpA/MotB [Roseovarius sp. HTCC2601]
          Length = 329

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 20/335 (5%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+Q I+IK+    D   ++ G+WK+ YADFMT +MAFFL++WI+ A+D++  + +  YF 
Sbjct: 5   NEQPIVIKRIEEDDGHGHHGGAWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLADYFT 64

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P          G+ D     +    +  D                G     +     + N
Sbjct: 65  PSLSQSGGRGDGLLDGTVLADDGVMSGTD----------------GPATPVQLPSFGQEN 108

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              + +S+  +   N       + +   +S  + +  +  E       ++         +
Sbjct: 109 PLAVFDSRLRDTNPNIQVEYDTRPEGRQESATINEGSDPMETARAQVAAERAQQEWDEAQ 168

Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             + L ++I   + G    ++    + F+ T  G+ I I+D+    MF   S+     T 
Sbjct: 169 --ERLEQQIMQEVVGSPELESYSDNLRFDRTENGLEIQIVDKSGESMFATGSARIQDRTR 226

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L+ I + +      ++I GHTD+ P+ R     NW LS DRA +  +VLM +GVS +R
Sbjct: 227 DLLRIIADAVVELPNELTISGHTDSVPYTRAATYSNWELSADRANATRRVLMANGVSPER 286

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           I++ISG A         P    NRRI + V+  + 
Sbjct: 287 ITRISGLADTEPLNPGSPDAPENRRISVTVQYPEA 321


>gi|91785660|ref|YP_560866.1| flagellar motor protein MotB [Burkholderia xenovorans LB400]
 gi|91689614|gb|ABE32814.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 335

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 54/338 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N++ D+ I++K+  A     ++ G+WK+ YADFMT +MAFFL+MW++++      K I  
Sbjct: 2   NKDKDRAIVVKR-AAPKKASHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN                          KI L   +   ++S  LK G  +     Q +
Sbjct: 61  YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 97

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +    +N                           E+S++      +  L  E  L  +
Sbjct: 98  TRSTDGSNN-------------------------RSERSVSHNNEDSVKQLQGE--LERR 130

Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  K+ + +    V     + +  ++T TG+ I I+D +  PMF  +     P
Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      I ++GHTDA+ +        NW LS DRA ++ + L+  G+
Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E ++ ++ G A  +    +DPM+  NRRI I+V +++
Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNKK 288


>gi|285019703|ref|YP_003377414.1| flagellar motor protein [Xanthomonas albilineans GPE PC73]
 gi|283474921|emb|CBA17420.1| probable flagellar motor protein [Xanthomonas albilineans]
          Length = 383

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 58/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ YADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   ETKSTVIIRRVKKVQGGGHHGGAWKVAYADFVTAMMAFFLVLWLVAATTKEQRAAIAEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                                      K                 +       + QR  N
Sbjct: 63  RNPS-------------------PLAGKSPAPSPGMAGPGGASTSMIKLGGSGELQRGNN 103

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
              + S S + +  K S                                        K K
Sbjct: 104 KDPFGSKSLKGDDSKIS-------------------------------------QREKEK 126

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++   +    A +     +L + T  G+ I I+D+ N PMFD  S++  P T
Sbjct: 127 QRLESLMQEMKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKENRPMFDLGSAVLKPYT 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   +      ISI GHTD + +       NW LS DRA +A + L+  G+SED
Sbjct: 187 RGILHELSGFINQVPNHISITGHTDVTQYSGKNGYSNWELSADRANAARRELVAGGMSED 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++S++ G +   L     P N  NRRI I+V  +  
Sbjct: 247 KVSRVVGLSSSVLFDKQVPNNPINRRISIVVMTKDA 282


>gi|332161302|ref|YP_004297879.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665532|gb|ADZ42176.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 409

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3   HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +++ +   D  +P      +                                
Sbjct: 63  FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                 +++  ++ K  D E+S  ++E Y L  L ++    ++ 
Sbjct: 92  ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L   +                L      G+ I IID +N PMF   S+   P  
Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD  P+ +      NW LS DRA ++ + L+  G+ E
Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267


>gi|318605218|emb|CBY26716.1| flagellar motor rotation protein MotB [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 409

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3   HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +++ +   D  +P      +                                
Sbjct: 63  FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                 +++  ++ K  D E+S  ++E Y L  L ++    ++ 
Sbjct: 92  ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L   +                L      G+ I IID +N PMF   S+   P  
Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD  P+ +      NW LS DRA ++ + L+  G+ E
Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267


>gi|327482425|gb|AEA85735.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166]
          Length = 337

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 141/335 (42%), Gaps = 64/335 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N Q II+K+   +    ++ G+WKI +ADF T +MAFFLVMW++++   + KK I  YF
Sbjct: 2   DNTQPIIVKRVKKVA-GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S + IDL      + +    ++              
Sbjct: 61  Q--------------DPIGFTESASPHVIDLGGTPTPSPDRTLNQV-------------- 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                    + E        DSE+ + L +  + E+                        
Sbjct: 93  ---------EQEPASKDAQFDSEQAETLAEQLERERLDLV-------------------- 123

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ+L  K+               +LFE T+ G+ I I+D  N PMF   S+   P   
Sbjct: 124 --LQELQNKVDENPE---LQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFE 178

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + E +A     ISI GHTDA PF       NW LS  RA +A + L+  G  E++
Sbjct: 179 DILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQ 238

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           I+++ G+A   L    DP N  NRRIDILV  ++ 
Sbjct: 239 IARVVGYASSALFDRKDPFNPVNRRIDILVLTKKA 273


>gi|123442804|ref|YP_001006781.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089765|emb|CAL12618.1| chemotaxis MotB protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 414

 Score =  249 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3   HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +++ +   D  +P      +                                
Sbjct: 63  FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                 +++  ++ K  D E+S  ++E Y L  L ++    ++ 
Sbjct: 92  ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L   +                L      G+ I IID +N PMF   S+   P  
Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD  P+ +      NW LS DRA ++ + L+  G+ E
Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267


>gi|304392497|ref|ZP_07374437.1| chemotaxis protein MotB [Ahrensia sp. R2A130]
 gi|303295127|gb|EFL89487.1| chemotaxis protein MotB [Ahrensia sp. R2A130]
          Length = 364

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 107/361 (29%), Positives = 173/361 (47%), Gaps = 32/361 (8%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q III ++  I +  ++ G+WKI +ADFMT +MA FLV+W+INA +++TKK++  YF
Sbjct: 5   DNEQPIIIVRRNRIAEDGHHGGAWKIAFADFMTAMMALFLVLWLINAANEETKKSVASYF 64

Query: 70  NPFG-KNLMTASKGIFDEQNP----PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           NP    +   + KGI+    P     E +         D+  T        G+   K++ 
Sbjct: 65  NPVKLVDRNRSKKGIWKSAGPSIETGEETEAGTDTQPEDKDSTSGPASSGAGADGSKREA 124

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-------------------TDLEK 165
           + + +    L     +E    +    +       +S                   TD   
Sbjct: 125 EFIADPFSELEEIASAERENMAAKTAAVGMAGDEESDAIRDPFSPVYWKPEPETPTDEIT 184

Query: 166 SINKEENYFLPPLSKEKILAMKRKKR------LQDLAKKISSTLSGLVADNIVKGVLFET 219
            I  EE    P ++ E     +  +         D+ K++ + ++  V D     +    
Sbjct: 185 PIRAEEEKPQPEITSEVSADDEAAREETDDAGASDVLKELKAAVAKAVDDG--PRLDVTP 242

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G+LISI D  +  MF+  SS+P    ++ +  + +VL+     + I GHTDA PFR 
Sbjct: 243 TPDGLLISITDDFDFAMFETGSSVPSGRLVLAMDAVAQVLSERPGKLHIHGHTDARPFRG 302

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             RDNW LS  RA+SA  +L++ G  E RI +ISGFA  RLK+  +P  ++NRRI++L+E
Sbjct: 303 GERDNWTLSSARAHSARYMLLRGGFGEKRIVEISGFADRRLKLVDEPDAASNRRIELLLE 362

Query: 340 D 340
            
Sbjct: 363 P 363


>gi|288962674|ref|YP_003452968.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288914940|dbj|BAI76424.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 347

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 11/340 (3%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
             II+K+ +   D   + G+WK+ YADF+T +M FFLVMW++N T  + +K I  YFNP 
Sbjct: 8   PPIIVKRHLGSHDEEEHNGTWKLAYADFVTAMMTFFLVMWLMNITTTEQRKGIADYFNPV 67

Query: 73  GKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             +   +   G+   ++  +  S    + + D+     S  +     +  +Q    ++ +
Sbjct: 68  AVSQSNSGADGMLAGRSVDKSGSLTTPNAAGDQASPVASPPVVASVGDSDRQPAGRKDPM 127

Query: 132 FYLSNS--------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            +            + +                +      + S  +     L  L + + 
Sbjct: 128 PHPPGGTVPPVDLLRPASESAPGAPATEPPAPQMAPQMAPQASAPQATRAELEALLERQS 187

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
             +  K  L+ L + +   ++     N ++G ++ +    G+ + + DQ    MF   S+
Sbjct: 188 SELGEKVALESLERDLRQRIAASPDLNALQGSLVIQQVPEGLRVQLTDQARFSMFKVGSA 247

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301
               +   +++ +   LA     I I GHTD   +  +    NW LS DRA +A + L+ 
Sbjct: 248 QMNDQGRRLMRMVASALAAVPNPIGITGHTDGLGYAADAKYGNWELSSDRANAARRELIA 307

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           SG+   RI ++ G A      A  P++ +NRRI I +  R
Sbjct: 308 SGIPNTRIVRVEGRADLDHFGAGGPLDPSNRRISITLLRR 347


>gi|302878239|ref|YP_003846803.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302581028|gb|ADL55039.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 328

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 59/339 (17%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
             +N + I+IK+   +    ++ G+WKI YADF+T +MAFFL+MW++ +T       I Q
Sbjct: 3   EDKNKRPIVIKRIKKVA-AGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLAGISQ 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +                  + I     + +T+ +  +K G           
Sbjct: 62  YFKTPLKVALAGGS---------GSGDSSSIIKGGGKDLTRTTGQVKAG----------- 101

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                       D+     +      ++ Y        +    K
Sbjct: 102 ----------------------------DVASDKRIINVKESQQEYL-------RAEREK 126

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              +L++L + I   +            +L + T  G+ I I+D++N PMF    +   P
Sbjct: 127 EMTKLKELKESIEKAIDNSEKLKQFKSQILLDITSEGLRIQIVDEKNRPMFQSGRAQLEP 186

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
            T  +L  IG+ L      +SI GHTDAS +        NW LS DRA ++ + L+  G+
Sbjct: 187 YTREILHAIGQTLNDVPNKVSISGHTDASVYGGGGIGYSNWELSADRANASRRELIAGGM 246

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++I ++ G +   L    DP++  NRRI +++ +++ 
Sbjct: 247 ADEKIVRVVGLSSAVLFKKEDPLSPTNRRISLIIMNKKA 285


>gi|291613013|ref|YP_003523170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583125|gb|ADE10783.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 59/337 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+ + I+IK+   +    ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +YF
Sbjct: 4   EDKRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +                  + I     + +T+ +  +K G    +K+   L+ 
Sbjct: 63  KTPLKVALMGGT---------GSGDSSSIIKGGGQDLTRATGQVKSGELLPEKKVINLKA 113

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                              E++   K  
Sbjct: 114 T----------------------------------------------QEEFERLERKKEL 127

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L+DL   I   +   V     K  +L + T  G+ + I+D++N PMF   SS   P T
Sbjct: 128 EKLKDLKANIEKAIDTDVKLKKYKNQILLDLTTEGLRVQIVDEKNRPMFQSGSSELEPYT 187

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L +IG++L      IS+ GHTDA P+        NW LS DRA ++ + L+  G++E
Sbjct: 188 KDILHEIGQMLNTMPNKISLSGHTDAQPYVTADRHYSNWELSADRANASRRELINGGLAE 247

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           D+I ++ G +   L   + P+N  NRRI I+V +++ 
Sbjct: 248 DKIVRVVGLSSAVLFDKAQPLNPINRRISIIVMNKRA 284


>gi|74317262|ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC
           25259]
 gi|74056757|gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 319

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 63/336 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    II+K+ +      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I +YF
Sbjct: 3   EQKAPIIVKR-IKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                              P + + Q          + K           Q K+ +   +
Sbjct: 62  KT-----------------PLKVAMQGGTGSGDSSSVIKGGGADLTRKNGQIKKGEVDAD 104

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
              Y   + Q+E                                          L     
Sbjct: 105 RKSYNLKAAQAE------------------------------------------LERLET 122

Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            +L+ L +++ + +          + +L + T  G+ I I+D++N PMF+ +S+   P T
Sbjct: 123 AKLKQLKQRLEAAIDRNPTLKQFKRQLLIDITSEGLRIQIVDEQNRPMFNLASAELQPYT 182

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
            V+L +I +VL      IS+ GHTDA P+ N      NW LS DRA ++ + L+  G+SE
Sbjct: 183 KVILHEIAQVLNDVENRISLSGHTDARPYANGERGYSNWELSADRANASRRELIVGGMSE 242

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ ++ G A       + P +  NRRI I+V +++
Sbjct: 243 AKMLRVVGLASSVPFTQAKPFDPVNRRISIIVLNKR 278


>gi|209964663|ref|YP_002297578.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|209958129|gb|ACI98765.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 364

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 144/314 (45%), Gaps = 3/314 (0%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK-GIFDEQNPP 90
           +WK+ YADF+T +MAFFL++W++N T  + K+ I  YF+P   +   +   G+   Q   
Sbjct: 28  AWKVAYADFVTAMMAFFLLLWLLNVTTSEQKQGIADYFSPASPSKQESGAGGVLGGQTIT 87

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
              ++          +   S+     S  Q + +          +  +  +         
Sbjct: 88  VPGAKINQSSPPQLTVPVPSMPASANSEEQVEDFDSSTKGRPDGTQDKVGQGEAGDSGGP 147

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-D 209
            +   D  +     +  +K  +  +     ++ LA   +++ Q  A+++   +  +    
Sbjct: 148 GDSRLDALEKAGEIRQADKNRDGKIDEKELKEALAKLEQEQFQRTAQELRQAIQQVPELR 207

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            + + ++ + T  G+ I ++DQ    MF   S+  LP+T  ++  + + +      +S+ 
Sbjct: 208 ELSQNLVIDNTPEGLRIQLVDQEGYSMFPSGSANMLPQTAQLMALVAQAVGKLPNHLSVS 267

Query: 270 GHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTD++PF    +R NW LS +RA ++ + L+ +GV E+RI +++G A        DP +
Sbjct: 268 GHTDSTPFAAGSSRSNWDLSTERANASVRALLAAGVPENRIDQVTGRADRDHLFPDDPRS 327

Query: 329 SANRRIDILVEDRQ 342
             NRR+ I++   Q
Sbjct: 328 PRNRRVSIVLLREQ 341


>gi|257094100|ref|YP_003167741.1| flagellar motor protein MotB [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046624|gb|ACV35812.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 319

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 58/337 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+ + I+IK+   +    ++ G+WKI YADF+T +MAFFL+MW++ +T     K I  +F
Sbjct: 2   EDVRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTASGDLKGIADFF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K                     + +     + +T+ S  +K G  + K +   L+ 
Sbjct: 61  QNPLK---------IASTGGSGTGDSSSVLKGGGKDLTRRSGQVKSGDIDSKSKTVNLKE 111

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                               K    + K
Sbjct: 112 TNAE---------------------------------------------QARKEFEEREK 126

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             L +L + I   +    A       +L + T  G+ I I+D++N PMFD SS+   P T
Sbjct: 127 ALLGELKESIEKLIESNPALKQFKSQLLIDITSEGLRIQIVDEQNRPMFDTSSAELKPHT 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
            V+L++IG+ L      +S+ GHTDA+ +    +   NW LS +RA ++ + L+  G+ E
Sbjct: 187 RVILREIGKALNAVHNKLSLSGHTDAAQYGGGDKGFSNWELSANRANASRRELIAGGMDE 246

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ ++ G A   L   +DP++S NRRI I+V +++ 
Sbjct: 247 HKVLRVVGLASTVLFDKNDPLSSINRRISIVVLNKRA 283


>gi|154253326|ref|YP_001414150.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157276|gb|ABS64493.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 298

 Score =  245 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N Q II+KK   +    ++ G+WKI YADF+T +MAFFL+MW+I+ T  + K+ +  YF 
Sbjct: 5   NQQPIILKKVKKVVH-GHHGGAWKIAYADFVTAMMAFFLLMWLISMTTPEQKQGLADYFA 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +  T+  G                                 G+   ++  +     
Sbjct: 64  PSNVSRSTSGAGGI-----------------------------MGGTAFDEEGARMPGTK 94

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              +         K+  T + +           EKS   E N+     S  +  AM+   
Sbjct: 95  PQVVMTISTPAQPKSPETAEEKAAAAQVDKLLKEKSARDERNFRSAAESIRQ--AMRENP 152

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L +L+                + V+ + T  G+ I I+DQ    MF   ++ P   T  
Sbjct: 153 DLAELS----------------RNVIIDETPEGLRIQIVDQDGRSMFPSGNAEPYERTRQ 196

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +++++  +L      +SI GHTDA+P        NW L+ DRA +  ++L  +G+S DRI
Sbjct: 197 LIEEVSNILIKLPNRVSISGHTDANPVEGRPGYSNWELTADRANATRRILAGAGLSNDRI 256

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++ G A        DP  +ANRR+ I++  
Sbjct: 257 YQVIGKADSEPLFPEDPYMAANRRLSIVLLR 287


>gi|220934494|ref|YP_002513393.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995804|gb|ACL72406.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 290

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 144/334 (43%), Gaps = 65/334 (19%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +  Q I++KK +      ++ G+WKI +ADF T +MAFFL++WI+  TDD+ K AI ++
Sbjct: 4   DDKKQPIVVKKIIKK--GGHHGGAWKIAFADFATAMMAFFLLLWILGFTDDEQKAAISEF 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F      +  +    F+       +S + ID      +                      
Sbjct: 62  FQNPSAFMGASPTPAFEAG---TGTSPSLIDFEGAIDMAP-------------------- 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                    Q +E    ++   +E+                +E   L  L +    A++R
Sbjct: 99  --------EQMAELDAETIEELAEQ----------------QEKERLEALMQALEEAIER 134

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            + L+    ++                L + T  G+ I I+D+ N PMFD  S+     +
Sbjct: 135 SQALEPFKDQL----------------LLDITPEGLRIQIVDKENRPMFDLGSAQLRGYS 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +LQ++G ++      ISI GHTDA PF      NW LS DRA +A + L+  G+ E +
Sbjct: 179 TAILQELGGLINQVPNKISITGHTDARPFLRPNYSNWELSSDRANAARRALVSGGMDEAK 238

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           I ++ G A   L   ++P N  NRRI I+V  R+
Sbjct: 239 IGRVVGLASTVLFDKANPENPINRRISIIVMTRE 272


>gi|15600146|ref|NP_253640.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAO1]
 gi|107104052|ref|ZP_01367970.1| hypothetical protein PaerPA_01005125 [Pseudomonas aeruginosa PACS2]
 gi|116053102|ref|YP_793421.1| flagellar motor protein MotB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894048|ref|YP_002442917.1| flagellar motor protein MotB [Pseudomonas aeruginosa LESB58]
 gi|254238332|ref|ZP_04931655.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719]
 gi|254244159|ref|ZP_04937481.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192]
 gi|313109955|ref|ZP_07795882.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016]
 gi|9951234|gb|AAG08338.1|AE004908_4 chemotaxis protein MotB [Pseudomonas aeruginosa PAO1]
 gi|115588323|gb|ABJ14338.1| chemotaxis protein MotB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170263|gb|EAZ55774.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719]
 gi|126197537|gb|EAZ61600.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192]
 gi|218774276|emb|CAW30093.1| chemotaxis protein MotB [Pseudomonas aeruginosa LESB58]
 gi|310882384|gb|EFQ40978.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016]
          Length = 347

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 57/336 (16%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S   IDL        +                    
Sbjct: 61  Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                +   +   +    E  I+ E+++ +     E +     +
Sbjct: 87  --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVER 126

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L +++ + +    +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +I+++ G+A  RL    DP+N  NRRIDI+V  R+ 
Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282


>gi|152985187|ref|YP_001351001.1| flagellar motor protein MotB [Pseudomonas aeruginosa PA7]
 gi|150960345|gb|ABR82370.1| chemotaxis protein MotB [Pseudomonas aeruginosa PA7]
          Length = 342

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 57/336 (16%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S   IDL        +                    
Sbjct: 61  Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                +   +   +    E  I+ E+++ +     E +     +
Sbjct: 87  --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAESLAEQVER 126

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L +++ + +    +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPET 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +IS++ G+A  RL    DP+N  NRRIDI+V  R+ 
Sbjct: 247 QISQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282


>gi|209963560|ref|YP_002296475.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|7025363|gb|AAF35851.1|AF220005_2 lateral flagellar motor protein MotB [Rhodospirillum centenum]
 gi|209957026|gb|ACI97662.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 325

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 26/334 (7%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  Q +I ++     D     G+WKI YADF+T +MAFF+++W++N T  + +  I  YF
Sbjct: 6   QKPQIVIKRRAQEESDELEGNGTWKIAYADFVTAMMAFFMLLWLVNVTTPEQRHGIADYF 65

Query: 70  NPFGKN-LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP   +   + + G    Q+     +      S  E I    V         ++      
Sbjct: 66  NPIAVSDANSGANGQLAGQSVAREGALTSNAASAWETIPTARVPTLSPPGPDRELDDGEG 125

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                  N++ +    N     +   + L +    E+S ++ E      L          
Sbjct: 126 GGASAQENAESAPADGNGTPMTAALEQQLQQVAAEEQSFDRIEQSVRDAL---------- 175

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                         +S +   ++ + ++FE T  G+ I I D+ +  MFD  ++      
Sbjct: 176 --------------MSAVDLADLSQNLVFERTADGLRIQITDRPHFSMFDSGATDLNGRA 221

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L  + E L+     I+I GHTD  PF  N    NW LS DRA +A +VL++ G+   
Sbjct: 222 VTLLGIVAEALSGVPNRIAISGHTDGRPFAANARYGNWELSADRANAARRVLLQKGIQPG 281

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           R++++ G A     +  DP +  NRRI I+V  R
Sbjct: 282 RVARVEGLADTLHLLPEDPGDPRNRRISIIVMRR 315


>gi|71906362|ref|YP_283949.1| flagellar motor protein MotB [Dechloromonas aromatica RCB]
 gi|71845983|gb|AAZ45479.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 316

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 63/338 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + ++ + I+IK+K  +    +  G+WKI YADF+T +MAFFL+MW++ +T     + I  
Sbjct: 2   SDDSTRPIVIKRKKVVAGGAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           +F                 QNP + S Q          I +         + Q K+    
Sbjct: 61  FF-----------------QNPLKVSQQGGAGSGDATSILQGGGKDLTRQSGQVKRGDVE 103

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                  S   Q+E  +                                          K
Sbjct: 104 AKKSTSFSKEAQAEFRR------------------------------------------K 121

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            ++RL+ L   I   +          K +L + T  G+ I I+D++N PMFD SS+   P
Sbjct: 122 EQERLESLKASIEKMIEQSPQLAQFKKQMLLDITSEGLRIQIVDEQNRPMFDSSSADLKP 181

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L++IG+ L   +  IS+ GHTDA+ F    +   NW LS +RA ++ + L+  G+
Sbjct: 182 YTRDILRQIGKALNGVSNRISLAGHTDAAQFAGGEKGFSNWELSANRANASRRELVVGGM 241

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            + ++ ++ G A   L   +DP+NS NRRI I+V +++
Sbjct: 242 DDSKVLRVVGLASTVLFDKNDPLNSVNRRISIVVLNQK 279


>gi|323139665|ref|ZP_08074707.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322395097|gb|EFX97656.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 351

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 13/342 (3%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            N   III+KK    D  ++ G WK+ +ADFMT +MAFFLVMW+IN+T  +TK  I QYF
Sbjct: 5   HNGSPIIIRKKRGDGDEDHHGGVWKLAFADFMTAMMAFFLVMWLINSTSKETKAVIVQYF 64

Query: 70  NPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP    +   A KG+ D +   +  S  K D        ++         +  K    + 
Sbjct: 65  NPVQLIDSNPAHKGMRDPKQTGQGKSLQKADDVKTTQEAESKDKDSALHKDPIKTLDEIA 124

Query: 129 NNIFYLSNSQQSEHCK-----------NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
                 + +  +E              + + + +   +   KS   E  +   +     P
Sbjct: 125 KREPPPTTADGAESSPKVGAMTPRDPFDRVAKSASPPQGAAKSAQEENKVESPKKDSHAP 184

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPM 236
                    K K     L  ++   ++      +       +    G+LI++ D  N  M
Sbjct: 185 SVTPAEQGEKAKASAAALQAELEKIVNQEARGAHAAPKTEVKQADEGVLITLTDDANFSM 244

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  S  P P+ + ++ +IG+VLA  T  I +RGHTD   + + + DNWRLS DRA    
Sbjct: 245 FEVGSIEPKPQLVRIIGQIGKVLAKKTGEIEVRGHTDGRSYTSKSYDNWRLSSDRATVVN 304

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +L++ G+   R+ KI G A   LK   DP+   NRRI+IL+
Sbjct: 305 YMLIRGGLPPARVGKIVGMADRHLKTPKDPLAPVNRRIEILL 346


>gi|146284108|ref|YP_001174261.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
 gi|145572313|gb|ABP81419.1| chemotaxis protein MotB [Pseudomonas stutzeri A1501]
          Length = 336

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 136/335 (40%), Gaps = 65/335 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N Q II+K+   +    ++ G+WKI +ADF T +MAFFLVMW++++   + KK I  YF
Sbjct: 2   DNTQPIIVKRVKKVA-GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S + IDL      + +                    
Sbjct: 61  Q--------------DPIGFTESASPHVIDLGGTPTPSPDRTLN---------------- 90

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                    + E  ++    D+++ +   +  + E+     +                  
Sbjct: 91  --------PELEPAQSEAQIDAQQAETFAEQIERERLELLLQELQ--------------- 127

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                     +              +LFE T+ G+ I I+D  N PMF   S+   P   
Sbjct: 128 ----------NKVDENPELQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFE 177

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + E +A     ISI GHTDA PF       NW LS  RA +A + L+  G  E++
Sbjct: 178 DILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQ 237

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           I+++ G+A   L    DP N  NRRIDILV  ++ 
Sbjct: 238 IARVVGYASSALFDRKDPFNPVNRRIDILVLTKKA 272


>gi|319405416|emb|CBI79035.1| putative flagellar motor protein MotB [Bartonella sp. AR 15-3]
          Length = 384

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 175/364 (48%), Gaps = 37/364 (10%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             D  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+ K+
Sbjct: 2   KSDDQQSSSEIIIVRRGRHDDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKE 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           AI  YFNP    +  T+++GI  +QN  E+  ++ +D        ++  D +    N  +
Sbjct: 62  AIANYFNPIKLVDPQTSNRGI--QQNDIEQDKKSSLDQ-------EHRDDAQSEKLNTTE 112

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN-----KEENYFLPP 177
           + + + N    L    QSE+   +      K  DL      +   N     +  + F P 
Sbjct: 113 EAELMLNPYPGLEKIVQSEYSAQNSAEQQFKQGDLVGQGAGDTQENLQLGTEHHDPFSPY 172

Query: 178 LSKEKILAMKRKKRLQD-------------------LAKKISSTLSGLVADNIVKGVLFE 218
             KE I + +++K  +                    LAK ++  +    +D +   V  +
Sbjct: 173 YWKENIDSSQKRKNQKQKTLVKETTQENNFSENSRALAKDLTDLIEETNSDIL---VHVK 229

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
             + G++I ++DQ    MF    S+P   TI ++  +  ++A     I I GHTDA P+R
Sbjct: 230 PIKEGVMIELMDQPKYEMFKVGLSVPTARTIDLIASMAGIIAKHQGDIVISGHTDARPYR 289

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +   DNW+LS  RA  AY +L++ G+ E RI ++ G+A   LK   DP  + NRRI I +
Sbjct: 290 STVYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFI 349

Query: 339 EDRQ 342
            D +
Sbjct: 350 RDPK 353


>gi|121596103|ref|YP_987999.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|120608183|gb|ABM43923.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
          Length = 313

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 136/338 (40%), Gaps = 62/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+       P+  G+WKI YADFMT +MAFFL+MW++ +T     + I  Y
Sbjct: 3   EKKLQPIIIKRAKKRPHAPH-GGAWKIAYADFMTAMMAFFLLMWLLGSTAKGELQGIAAY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+   K  M    G  +  +                 I     DL       ++      
Sbjct: 62  FSSPLKVAMQGGDGAGNSSSV----------------IPGGGNDLSKVHGQVRRSNSDSP 105

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            N+     + ++E  +    R                                       
Sbjct: 106 TNMRSSVEASRAERARQDAQR--------------------------------------- 126

Query: 189 KKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              ++ L  KI + ++     N  +  +  + T  G+ I I+D +N PMFD  S++  P 
Sbjct: 127 ---IKALQTKIEAMITESPRLNEYRSQIRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPY 183

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L +IG  L      IS+ GHTDA P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 184 MRDILHQIGAALGGVENRISLSGHTDAVPYGNGDRGYSNWELSADRANASRRELVAAGMP 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + ++ ++ G A   L    +P  + NRRI I V   + 
Sbjct: 244 DAKLGRVVGMAASDLLEPQNPRAAVNRRITITVLTHEA 281


>gi|121602153|ref|YP_989388.1| putative flagellar motor protein MotB [Bartonella bacilliformis
           KC583]
 gi|120614330|gb|ABM44931.1| putative flagellar motor protein MotB [Bartonella bacilliformis
           KC583]
          Length = 357

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 97/358 (27%), Positives = 171/358 (47%), Gaps = 21/358 (5%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             +    + + II+++    D   ++ G WKI YADFMT +MA FLVMW++NA D++ K 
Sbjct: 2   KSEDQHTHSEIIIVRRGGHDDHDDHHGGVWKIAYADFMTAMMALFLVMWLVNAKDEEEKA 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ-- 120
            I  YFNP    +  T  +G+  +QN  E ++   +D +  E     +  L +    +  
Sbjct: 62  VIANYFNPIKLVDHETTIRGV--KQNDAEDNNTPSVDPTRREEAQSENGQLNLTEEAELM 119

Query: 121 -KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL--------------EK 165
                   +      +   QS+    + T   ++  D  +++ +              + 
Sbjct: 120 RDPYTGLEKIVDAKRTMQDQSDKNAENSTSMEQENGDSRENSKVGIDYYDPFSLNYWKQA 179

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           + +       P   ++        +   D AK+++  +   V D+ V  V  E  + G++
Sbjct: 180 ASDALVKAETPLAFQKLAQENFPSQESIDFAKELTEFMKETVNDHHVS-VYVEPIKEGVI 238

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           I ++DQ    MF   SS+P  ET+ V+ ++ +++A     + I GHTD+ P+R+  RDNW
Sbjct: 239 IELMDQPQREMFRVGSSLPTAETVEVIGEMAKIIAKHQGDVIISGHTDSRPYRSANRDNW 298

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +LS  RA  AY +L++ G+ E RI ++ G+A   LK  +DP  + NRRI I + +  G
Sbjct: 299 QLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKADPYAAENRRISIFIRNPNG 356


>gi|319406989|emb|CBI80626.1| putative flagellar motor protein MotB [Bartonella sp. 1-1C]
          Length = 384

 Score =  242 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 102/365 (27%), Positives = 179/365 (49%), Gaps = 37/365 (10%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             +  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+ K+
Sbjct: 2   KSEDQQSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKE 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           AI  YFNP    +  T+++GI  +    E+  ++ +D        +   D +   +N  +
Sbjct: 62  AIANYFNPIKLVDPQTSNRGIQHKD--IEQDKKSSLDQ-------ERRDDDQSEKSNPME 112

Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKS-TDLEKSIN---KEENYFLPP 177
           + + + N    L    QSEH  KN   +  EKG  L +   D ++++    +  + F P 
Sbjct: 113 EAELMHNPYLGLEKIVQSEHHAKNPSEQQFEKGDLLGQGVGDSQENLQLGIEYHDPFSPD 172

Query: 178 LSKEKILAMKRKKRLQD-------------------LAKKISSTLSGLVADNIVKGVLFE 218
             +E I + +++K  +                    LAK+++  +    +D +      +
Sbjct: 173 YWRENIDSFQKRKDQKQKTLVKESIQENNSSENSRVLAKELTDLIEAKNSDILA---HVK 229

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
             + G++I ++DQ    MF    S+P   T+ ++  +  ++A     + I GHTDA P+R
Sbjct: 230 PIKEGVMIELMDQPKYEMFKVGLSVPTARTVDLISSMAGIIAKYQGDVVISGHTDARPYR 289

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +   DNW+LS  RA  AY +L++ G  E RI ++ G+A   LK   +P  + NRRI I +
Sbjct: 290 STVYDNWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKNPYAAENRRISIFI 349

Query: 339 EDRQG 343
            D + 
Sbjct: 350 RDPKA 354


>gi|313500883|gb|ADR62249.1| MotB [Pseudomonas putida BIRD-1]
          Length = 346

 Score =  242 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D    PE +    I+  +                           
Sbjct: 61  QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                             T  +++         +E    + E   L  L +E    ++  
Sbjct: 95  ------------------TEPTQQSPTQLSKDQVETMAEQVERERLELLLQELQNKVEEN 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275


>gi|261855636|ref|YP_003262919.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261836105|gb|ACX95872.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 358

 Score =  242 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 144/332 (43%), Gaps = 56/332 (16%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + IIIKK        +  G+WKI YADF+T +MAFFL+MW++ +  +   K I  YF
Sbjct: 6   DQSKPIIIKKVSKGHGGHH-GGAWKIAYADFVTAMMAFFLLMWLLGSVGEVKLKGIADYF 64

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   K  +            P       +  +  E +T+    ++ GS    K       
Sbjct: 65  NNPVKVTLEGG---------PSAGMSVSLIDAGGEDLTRKEGQVRNGSEPPAK------- 108

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                  + +   +      K +  + K
Sbjct: 109 --------------------------------------IETDQKKMTEEEARKKIEEEDK 130

Query: 190 KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KR+++L K++ S ++   A    K  +  + TR G+ I IIDQ N PMF  SSS   P  
Sbjct: 131 KRIENLKKELESLINVDPALKAYKDQIKLDMTRDGLRIQIIDQANRPMFKISSSRLEPYA 190

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+K+  V+      +SI GHTD+ P+  + R NW LS DRA +A + L++ G  E +
Sbjct: 191 AEILKKLAPVINKLPNRLSITGHTDSLPYNGVDRTNWELSADRANAARRELVQDGYDESK 250

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + ++ G A     I SDP +  NRRI I+V +
Sbjct: 251 LLRVVGMAAALPFIPSDPADPRNRRISIIVMN 282


>gi|296391793|ref|ZP_06881268.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAb1]
          Length = 347

 Score =  242 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 57/336 (16%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S   IDL        +                    
Sbjct: 61  Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                +   +   +    E  I+ E+++ +     E +     +
Sbjct: 87  --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVER 126

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL  L +++ + +    +  +    + FE TR G+ I I+D  N PMFD  S+   P  
Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + E +      ISI GHTDA P+  N    NW LS +RA +A + L+  G  E 
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +I+++ G+A  RL    DP+N  NRRIDI+V  R+ 
Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282


>gi|148549982|ref|YP_001270084.1| flagellar motor protein MotB [Pseudomonas putida F1]
 gi|148514040|gb|ABQ80900.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 346

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D    PE +    I+  +                           
Sbjct: 61  QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                             T  +++         +E    + E   L  L +E    ++  
Sbjct: 95  ------------------TEPTQQSPTQLNKDQVETMAEQVERERLELLLQELQNKVEEN 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275


>gi|114330218|ref|YP_746440.1| flagellar motor protein MotB [Nitrosomonas eutropha C91]
 gi|114307232|gb|ABI58475.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91]
          Length = 314

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 62/321 (19%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ G+WKI YADF+T +MAFFL+MW++ +T    K+ I +YF    K  +    G  D
Sbjct: 20  GQHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGISEYFKMPLKVALLGGDGSGD 79

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             +                        +K G  +  ++  ++  + F             
Sbjct: 80  STSV-----------------------IKGGGDDLSRRIGQMRRSDFDDLKQSLDMDALQ 116

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-S 204
           +L    E+                                    ++L+ L  +I   + S
Sbjct: 117 TLQDRVER------------------------------------EQLEKLKARIEDAINS 140

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             V +     +L + T  G+ I I+D++N PMF    +   P T ++L +IG++L     
Sbjct: 141 NPVLNKFKSQLLLDITSEGLRIQIVDEKNRPMFAIGKAELQPYTKMILHEIGKMLNDVGN 200

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            IS+ GHTDA+P+ +      NW LS DRA ++ + L+  G++ +++ ++ G +   +  
Sbjct: 201 KISLSGHTDATPYPSGEKSYSNWELSADRANASRRELIAGGMNPEKMLRVVGLSSAVMFD 260

Query: 323 ASDPMNSANRRIDILVEDRQG 343
             D  +  NRRI I+V +++ 
Sbjct: 261 KEDSFSPFNRRISIIVMNKKA 281


>gi|222112258|ref|YP_002554522.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|221731702|gb|ACM34522.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 313

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 134/338 (39%), Gaps = 62/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+       P+  G+WKI YADF+T +MAFFL+MW++ +T     + I  Y
Sbjct: 3   EKKLQPIIIKRAKKRPHAPH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+   K  M    G  +  +                 I     DL       ++      
Sbjct: 62  FSSPLKVAMQGGDGAGNSSSV----------------IPGGGNDLSKVHGQVRRSNSDSS 105

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            N+     + ++E  +                                            
Sbjct: 106 TNMRSSVEASRAERARQDAQ---------------------------------------- 125

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             R++ L  KI + +      +     +  + T  G+ I I+D +N PMFD  S++  P 
Sbjct: 126 --RIKALQTKIEAMITENPRLNEYRSQIRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPY 183

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L +IG  L      IS+ GHTDA P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 184 MRDILHQIGAALGGVENRISLSGHTDAVPYGNGDRGYSNWELSADRANASRRELVAAGMP 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + ++ ++ G A   L    +P  + NRRI I V   + 
Sbjct: 244 DAKLGRVVGMAASDLLEPQNPRAAVNRRITITVLTHEA 281


>gi|26991582|ref|NP_747007.1| flagellar motor protein MotB [Pseudomonas putida KT2440]
 gi|24986670|gb|AAN70471.1|AE016688_10 motility protein, MotB family [Pseudomonas putida KT2440]
          Length = 346

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D    PE +    I+  +                           
Sbjct: 61  QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                             T  +++         +E    + E   L  L +E    ++  
Sbjct: 95  ------------------TEPTQQSPTQLSKDQVETMAEQVERERLELLLQELQNKVEEN 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      +SI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKVSISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275


>gi|296447981|ref|ZP_06889887.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296254491|gb|EFH01612.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 381

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 168/379 (44%), Gaps = 45/379 (11%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            ++  + I I+K     +  ++ G+WKI +ADFMT +MAFFLVMWIIN+T  +TK AI Q
Sbjct: 3   EEKEAEIIFIRKNHGDHEEGHHGGAWKIAFADFMTAMMAFFLVMWIINSTSKETKAAIVQ 62

Query: 68  YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI-------------------- 106
           YFNP    +   A KG+ D ++  +  S+     +  EH                     
Sbjct: 63  YFNPVQLVDSNPAHKGLRDPKDGGQGKSEKPTAATQKEHSGAAPESDKDAPQREAALLFD 122

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
              ++D   G  N K+        IF     +             E G     S      
Sbjct: 123 PITTLDEIAGPGNTKEGQTEQAPPIFGDPFDRSGRGVGYVEPHVEESGSPDKASETERAE 182

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--------------------STLSGL 206
              +     PP S + +   +R+      A + +                      ++  
Sbjct: 183 ERAKPASSTPPTSAKTMTRQQRQAAATAAADEKAKAEEKAKAEAAQLAATRAAVDRIAKA 242

Query: 207 VADNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            + N   G   E T    G+LIS+ D  N  MF   S  P P+ + ++ +I  VLA    
Sbjct: 243 ESANAQPGPHVEVTETAEGLLISLTDDANFSMFAIGSVKPKPQLVRIVGQIAGVLAKQPG 302

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + +RGHTDA  +++   DNWRLS DRA  AY +L++ G++E R+ KI+G+A   LK   
Sbjct: 303 EVELRGHTDARSYKSKVYDNWRLSADRANMAYYMLLRGGLAEKRVVKIAGYADRNLKAQK 362

Query: 325 DPMNSANRRIDILVEDRQG 343
           +P+ + NRRI+ILV  R+G
Sbjct: 363 EPLAAVNRRIEILV--RKG 379


>gi|319898651|ref|YP_004158744.1| flagellar motor protein MotB [Bartonella clarridgeiae 73]
 gi|319402615|emb|CBI76160.1| putative flagellar motor protein MotB [Bartonella clarridgeiae 73]
          Length = 384

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 174/361 (48%), Gaps = 31/361 (8%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             D  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD TK+
Sbjct: 2   KSDDQQSSSEIIIVRRGGHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDATKE 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           AI  YFNP    +  T+++GI  + N  E+  ++ +D    +       D +   +N  +
Sbjct: 62  AIANYFNPIKLVDPQTSNRGI--QHNDIEQDKKSSLDQECKD-------DAQSEKSNAME 112

Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLP--PL 178
           + + + +    L    QSE   +N   +  E+G  + +   D +K++     Y  P  P 
Sbjct: 113 EAELMRDPYLGLKKIVQSERNAQNPAEQQFEQGNLVGQGAGDSQKNLQLGTEYHDPFSPY 172

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR----------------- 221
              + +A  +K+++Q        +     +      +L E T                  
Sbjct: 173 YWSENVASSQKRKIQKQKMMAKESEQENNSSENSHALLKELTDLIEGETNNILAHVKPIK 232

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G++I ++DQ    MF    SIP  +TI ++  +  ++A     + I GHTDA P+R+  
Sbjct: 233 EGVMIELMDQPKYEMFKVGLSIPTAQTIDLISSMAGIIAKHQGDVVISGHTDARPYRSNV 292

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            DNW+LS  RA  AY +L++ G+ E RI ++ G+A   LK   DP  + NRRI I + D 
Sbjct: 293 YDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRDP 352

Query: 342 Q 342
           +
Sbjct: 353 K 353


>gi|30248076|ref|NP_840146.1| flagellar motor protein MotB [Nitrosomonas europaea ATCC 19718]
 gi|30179961|emb|CAD83956.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 307

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 62/321 (19%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ G+WKI YADF+T +MAFFL+MW++ +T    K+ I +YF    K  +    G  D
Sbjct: 20  GQHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGIAEYFKTPLKVALLGGDGSGD 79

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             +                        +K G  +  K+  +++ + F             
Sbjct: 80  STSV-----------------------VKGGGDDISKKIGQMKRSDF------------- 103

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                     DL +S D++     ++ + L               +L+ L  +I  T++ 
Sbjct: 104 ---------DDLKRSIDMDALQALQDRFELE--------------QLEKLKARIEDTINS 140

Query: 206 LVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             A N  K  +L + T  G+ I I+D++N PMF    +     T ++L +IG++L     
Sbjct: 141 NPALNKFKSQLLLDITSEGLRIQIVDEKNRPMFSMGRAELQSYTKMILHEIGKMLNDVGN 200

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            IS+ GHTDA+P+        NW LS DRA ++ + L+  G+S +++ ++ G +   +  
Sbjct: 201 KISLSGHTDATPYPTGEKSYSNWELSADRANASRRELIAGGMSPEKMLRVVGLSSAVMFD 260

Query: 323 ASDPMNSANRRIDILVEDRQG 343
            +DP +  NRRI I+V +++ 
Sbjct: 261 KADPFSPFNRRISIIVMNKKA 281


>gi|332527142|ref|ZP_08403219.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332111570|gb|EGJ11552.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 322

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 148/340 (43%), Gaps = 64/340 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T +  +K    
Sbjct: 4   DAKKLQPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRK---- 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                         GI D    P + + N                               
Sbjct: 59  --------------GIADYFTSPLKVALNSG----------------------------- 75

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                            ++       G+DL ++T   K  + E       L   K   ++
Sbjct: 76  ------------GSGAGDASHVLKGGGQDLTRTTGQVKRGDIEAPRATVNLQALKQEQVR 123

Query: 188 RK-KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            +  RLQDL ++I   ++     + ++  +  + TR G+ I I+D++N PMF   S++  
Sbjct: 124 AEIVRLQDLKRRIEEKIAANKRLSAMRSQLRLDMTRDGLRIQIVDEQNRPMFASGSAVVQ 183

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
           P    +LQ+IG VLA     +++ GHTDA  +        NW LS DRA ++ +VL + G
Sbjct: 184 PYMRELLQEIGSVLAEVPNRLTLEGHTDAMAYAGGERGYSNWELSSDRANASRRVLAEGG 243

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + EDR+ ++ G A  +     DP+   NRRI I+V +R+ 
Sbjct: 244 LPEDRMLRVQGLASSQPFDRQDPLAPTNRRISIIVMNREA 283


>gi|319764525|ref|YP_004128462.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|317119086|gb|ADV01575.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
          Length = 312

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 63/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     + I  Y
Sbjct: 3   EKKLQPIIIKRIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  M    G  +  +                 +     +       Q ++     
Sbjct: 62  FASPLKVAMQGGDGAGNSSS-----------------VIPGGGNDLSKVHGQVRRSDSES 104

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N      ++ ++E  +    R                                       
Sbjct: 105 NTSTRSIDTVRAERARLDAQR--------------------------------------- 125

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              ++ L  KI + +      +     +  + T  G+ I I+D +N PMFD  S++  P 
Sbjct: 126 ---IKALQSKIDAMITENPRLNEYRSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG  L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 183 MRDILREIGAALGSVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMP 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + R+ ++ G A   L    +P    NRRI I V   + 
Sbjct: 243 DARLGRVVGLAASDLLEPDNPRAPVNRRITITVLTHEA 280


>gi|330826741|ref|YP_004390044.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329312113|gb|AEB86528.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 311

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 63/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     + I  Y
Sbjct: 3   EKKLQPIIIKRIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  M    G  +  +                 +     +       Q ++     
Sbjct: 62  FASPLKVAMQGGDGAGNSSS-----------------VIPGGGNDLSKVHGQVRRSDSES 104

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N      ++ ++E  +    R                                       
Sbjct: 105 NTSTRSIDTVRAERARLDAQR--------------------------------------- 125

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              ++ L  KI + +      +     +  + T  G+ I I+D +N PMFD  S++  P 
Sbjct: 126 ---IKALQSKIDAMITENPRLNEYRSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG  L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 183 MRDILREIGAALGSVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMP 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + R+ ++ G A   L    +P    NRRI I V   + 
Sbjct: 243 DARLGRVVGLAASDLLEPDNPRAPVNRRITITVLTHEA 280


>gi|171057687|ref|YP_001790036.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170775132|gb|ACB33271.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 320

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 137/338 (40%), Gaps = 63/338 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q IIIK+      + +  G+WKI YADF+T +MAFFL+MW++ +T +  K     
Sbjct: 4   DAKKLQPIIIKRVKKGGHSAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDK----- 57

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                        KGI D    P + + +                               
Sbjct: 58  -------------KGIQDFFQSPLKVAMSG------------------------------ 74

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                            ++ +     G DL +++   K             + +      
Sbjct: 75  ------------GAGAGDATSVIKGGGTDLSQTSGQVKRGEVPSKKTYNAEAIKTSQRKA 122

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            ++RL+ L +++   ++           +  + TR G+ I I+D++N PMFD  +S   P
Sbjct: 123 EQERLETLRQRVQDVMANSPKLAEFKNQIRLDMTRDGLRIQIVDEQNRPMFDSGASEVKP 182

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
               +L+ IG VL      +++ GHTDA P        NW LS DRA ++ + L+  G+ 
Sbjct: 183 YMREILRAIGSVLTEVPNRLTLEGHTDAKPMGSGAGYSNWELSSDRANASRRELLAGGLD 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + R+ ++ G A        DP+N  NRRI I+V  R+ 
Sbjct: 243 DARVLRVQGLAASVPFDQQDPLNPINRRISIIVMTREA 280


>gi|330901956|gb|EGH33293.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 302

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     +  S   IDL     ++ N                    
Sbjct: 61  K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L+   Q+    +++  ++E  +   ++ + E                      + +
Sbjct: 89  ----LNPEVQTTPSPDTVPIEAENAETKAEAVEQE----------------------RLE 122

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ+L  K+               +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 123 MLLQELQTKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      +SI GHTDA+PF  +    NW LS +RA +A + L+     + +
Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALYDRQNPTNPINRRIDIVVLTKKA 274


>gi|23013133|ref|ZP_00053071.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 344

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 20/334 (5%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E  Q IIIK+   +    +  G+WK+ YADF+T +MAFFL++W++NA  ++    +  YF
Sbjct: 3   EGGQQIIIKRVKKVAGGAH-GGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSNYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P   +  ++  G           +Q     S           +  G  +     +   +
Sbjct: 62  APTMASKSSSGAGGLLGGKVIGEGAQTSNTSSPSLVQHLPPASIGPGGEDLTGSKEFESD 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N    SN    +       +   +GKD    ++ E                ++  A + +
Sbjct: 122 NPSE-SNQGPGQGAGQGAGQGPGQGKDRSGMSEQE---------------FKEAQAQREQ 165

Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++     + +   + G+         +L + T  G+ I I DQ    MF   SS P   T
Sbjct: 166 QKFDKAKEVLEGAMKGIPEMKQFQGSMLVDNTPEGLRIQITDQEGLAMFPSGSSAPFGHT 225

Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L  +  V+       I+I GHTDA PFR+     NW LS DRA +  + L+ SGV E
Sbjct: 226 RAMLDLVSRVVRQLPDNRIAISGHTDAVPFRDPSGYTNWELSADRALATRRALIASGVPE 285

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            RI +I G A       +DP    NRRI I++  
Sbjct: 286 GRIDRIVGRADQEPLDKADPKGLRNRRISIILLR 319


>gi|150395498|ref|YP_001325965.1| flagellar motor protein MotB [Sinorhizobium medicae WSM419]
 gi|150027013|gb|ABR59130.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 397

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 185/400 (46%), Gaps = 60/400 (15%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+     N +N+  III ++ A     ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MSDESHHNGKNE--IIIVRRSAGSHEGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK AI  YFNP        ++    +     +  + +    +D   TK+    K G    
Sbjct: 59  TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEKTQQRSKVDGDQTKSGGSAKSGDQLT 118

Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
               +                          E NI    +   +E   ++     E  +D
Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAESGPSTGAAGGEAYRD 178

Query: 157 L------------------CKSTDLEKSINKEENYFLPPLSKEKIL-------------- 184
                               +S     +    E  F+P  +  K L              
Sbjct: 179 PFDPDFWTKQVEVKDAGNTVESDVAIAANAAAEEKFVPEETSAKALQNQANAEDRTENEA 238

Query: 185 -AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            A  R++  + L  +I   L G  A  +++G++      G+L++I +Q + PMF   S++
Sbjct: 239 AAEDRQQEAEALKAEIERELGGE-AGRLLEGLVVAPAEGGLLVTISEQTDAPMFAVGSAV 297

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P  E ++ ++KIG +LA     +++RGHTD  PF++   DNWRLS  RA SAY +L++ G
Sbjct: 298 PQKELVLAMEKIGRLLAQRPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGG 357

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + E+R+ +ISGFA  RL++ +DP   ANRRI+IL++  QG
Sbjct: 358 LKEERVKQISGFADRRLQVPNDPYAPANRRIEILLQSGQG 397


>gi|325981670|ref|YP_004294072.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531189|gb|ADZ25910.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 312

 Score =  239 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 64/336 (19%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           + + I+IK+   +    ++ G+WKI YADF+T +MAFFL+MW++ ++     +       
Sbjct: 6   SQRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSSTQSQLE------- 57

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                      GI +    P      KI       I +++  +K G T+  +Q+ +++N 
Sbjct: 58  -----------GISEYFKTPL-----KIAFMGGSSIGESNSLIKGGGTDLTRQHGQVKNG 101

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               ++    +  K    R                                        +
Sbjct: 102 EIITNDKANKQAIKVIKERI-------------------------------------ELE 124

Query: 191 RLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +L+ L KKI   + +          +L + T  G+ I I+D++N PMF    +   P T 
Sbjct: 125 KLEGLKKKIEEAIQANPQLQRFANQLLLDITTDGLRIQIVDEQNRPMFALGRAELQPYTR 184

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L++IG++L   T  IS+ GHTDA PF +      NW LS DRA ++ + L+  G+  +
Sbjct: 185 TILREIGKMLNEVTNKISLSGHTDAKPFPSGDKGYSNWELSADRANASRRELIVGGMDAN 244

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ ++ G +   L    DP+N  NRRI I+V + + 
Sbjct: 245 KMLQVVGLSSAVLFDKDDPLNPINRRISIVVMNEKA 280


>gi|325271245|ref|ZP_08137790.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51]
 gi|324103648|gb|EGC00950.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51]
          Length = 340

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D    PE +    I+  +                           
Sbjct: 61  QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                             T  ++          +E    + E   L  L +E    ++  
Sbjct: 95  ------------------TEPTQPSPTQLDKDQVETMAEQVERERLELLLQELQNKVEEN 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEFGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKNPFNPVNRRIDIIVLTKKA 275


>gi|157373190|ref|YP_001471790.1| OmpA/MotB [Shewanella sediminis HAW-EB3]
 gi|157315564|gb|ABV34662.1| OmpA/MotB [Shewanella sediminis HAW-EB3]
          Length = 336

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 139/330 (42%), Gaps = 44/330 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            ++ +IIK++     +  + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY N
Sbjct: 4   KNEPLIIKRRKRQKRSATHGGAWKVAFADFTLAMMALFMVLWILQIADQQERTMIVQYLN 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
             G    + S   FD    P     + IDL     + +  +                   
Sbjct: 64  --GDMFASGSINPFDLSQSP-----SMIDLQGSIALQQAIIPATGTGV------------ 104

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                     E    ++      G+D  K          E N  +P          + + 
Sbjct: 105 ----------EKAGPAIHNHIPVGEDNAK-----AGRGPELNSLVPG-------KFETQA 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ LA+++ S ++ +   N+   V  +    G+ I I D  +  MF + SS   P    
Sbjct: 143 QLEFLAREVDSVITEV---NLSANVEIKVVPQGVRILIHDNVHQFMFTRGSSNMKPYFED 199

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G +L      ISI GHTD++P+      NW LS  RA  A +VL   GV   +I 
Sbjct: 200 LLMALGPLLGGVENKISISGHTDSTPYAGKTFTNWELSSKRALLARRVLEYGGVKRHQII 259

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++G A     I +DP  +ANRRI++LV  
Sbjct: 260 QVTGMADQSPYIQNDPAAAANRRIEMLVLT 289


>gi|124268058|ref|YP_001022062.1| chemotaxis signal transduction protein CheY [Methylibium
           petroleiphilum PM1]
 gi|124260833|gb|ABM95827.1| Chemotaxis signal transduction protein CheY [Methylibium
           petroleiphilum PM1]
          Length = 320

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 60/339 (17%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q II+KK        +  G+WKI YADF+T +MAFFL+MW++ +T +  +K I+ 
Sbjct: 4   DAKKLQPIIVKKIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRKGIQD 62

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN                 NP + S            + K        ST Q K+    
Sbjct: 63  YFN-----------------NPIKVSMMGGSGSGDSSSVVKGGGQDLTRSTGQVKRGDVE 105

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                Y   + ++   +                                        A  
Sbjct: 106 AERKSYTLQALKATRAQQ---------------------------------------ASA 126

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + L+ L  ++ S L+     N +K  + F+ T  G+ I I+D++N PMF   S++  P
Sbjct: 127 EAESLKMLKGRVESKLANDPRFNELKAQIRFDMTADGLRIQIVDEQNRPMFATGSAVVQP 186

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L+ IG VLA     +++ GHTD + F   A    NW LS DRA ++ + L+  G+
Sbjct: 187 YMRELLRTIGGVLAEVPNKLTLEGHTDTAAFSAGAGGYSNWELSADRANASRRELIAGGL 246

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ ++ G A   L     P+N  NRRI I+V +R+ 
Sbjct: 247 ADEKVLRVQGLAASSLFDREQPLNPVNRRISIIVMNREA 285


>gi|323492326|ref|ZP_08097479.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546]
 gi|323313373|gb|EGA66484.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546]
          Length = 330

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 133/336 (39%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+    D  P++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QRQEQVVFKRSKKHDHEPHHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLASDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  NS       G               E +  +P          
Sbjct: 93  --------PSRHDSTHTVNSFFDGDGDGP--------------ETDSLIPG-------TF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             ++RL  LAK I   +    A      V    T  G+ + + D     MF +  +   P
Sbjct: 124 DTQERLAALAKVIEEAVRQSSAQG---NVNVTVTPQGLRVVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V       I I GHTD++ F  R     NW LS  RA  A   L+  G+
Sbjct: 181 FFEDLLLALAPVFKRVVNPIIISGHTDSTQFKHRFKQASNWELSASRANVARVTLVSGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++R+ +++G +   L    DP +S NRRI++ V  
Sbjct: 241 PDERVLQVTGMSDRALLNNDDPESSENRRIELFVLT 276


>gi|283133065|dbj|BAI63831.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci]
          Length = 341

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTPNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|319403973|emb|CBI77561.1| putative flagellar motor protein MotB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 384

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 31/361 (8%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
             +  Q + + II+++    D   ++ G WKI YADFMT +MA FLV+W++N  DD+TK+
Sbjct: 2   KSEDQQSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDETKE 61

Query: 64  AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           AI  YFNP    +  T+++GI  +    E+  ++ +D        +   D +   +N  +
Sbjct: 62  AIANYFNPIKLVDPQTSNRGIQHKD--IEQDKKSSLDQ-------ERRDDDQSEKSNAME 112

Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKSTDLEK---SINKEENYFLPPL 178
           + + + N    L    QSEH  KN   +  EKG  + +     +    +  E +    P 
Sbjct: 113 EAELMHNPYPGLEKIVQSEHHAKNPSEQQFEKGDLVGQGVGDSQENLQLGTEHHDPFSPH 172

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR----------------- 221
              + +   +K++ Q     +  ++    +    + +  E T                  
Sbjct: 173 YWRENIDFSQKRKDQKQKTLVKESIQENNSSENSRALAQELTDFIEGENSNILAHVKPIK 232

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G++I ++DQ    MF    S+P   TI ++  +  ++A     + I GHTDA  +R+  
Sbjct: 233 EGVMIELMDQPKYEMFKVGLSVPTARTIDLISSMAGIIAKYQGDVVISGHTDARAYRSAV 292

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            DNW+LS  RA  AY +L++ G  E RI ++ G+A   LK   DP  + NRRI I + D 
Sbjct: 293 YDNWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRDP 352

Query: 342 Q 342
           +
Sbjct: 353 K 353


>gi|329890064|ref|ZP_08268407.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568]
 gi|328845365|gb|EGF94929.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 135/333 (40%), Gaps = 50/333 (15%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           ND+ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF 
Sbjct: 4   NDRPILIKKVKKVAGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +  T+  G                                            L   
Sbjct: 64  PANVSASTSGSG------------------------------------------GILGGT 81

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               S   +       + + + +  D  +      ++       L        +A +   
Sbjct: 82  SLGDSEGAKGAGSNAVIEQLAPEAPDAPQEAGQNSNLASASEAAL-----RAEIARREAA 136

Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                A+ +   +  +     + K ++ + T  G+ I ++DQ    MF+  SS P P   
Sbjct: 137 DFASAAESLRQAMQSMPELAELSKQLIIDQTPEGLRIQLVDQEGRSMFENGSSRPNPRAQ 196

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307
           ++L+ + +V+      I+I GHT A    + A    +W LS  RA ++   L  +GVS D
Sbjct: 197 LLLRAVAKVINQLPNRITITGHTSAVAGSSRASSPGDWPLSSARADASRLTLQSAGVSSD 256

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+  ++G A        DP  + NRRI I++  
Sbjct: 257 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVLLR 289


>gi|253996630|ref|YP_003048694.1| flagellar motor protein MotB [Methylotenera mobilis JLW8]
 gi|253983309|gb|ACT48167.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 312

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 60/331 (18%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KK+      ++ G+WKI YADF+T +MAFFL+MW++ +T    K+ I +YF      
Sbjct: 9   IIVKKIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKAQKEGISEYFKTPL-- 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                                K+ L   + +  +   +K G      + Q     +    
Sbjct: 67  ---------------------KVALMGGDSVGASDTLIKGGGGKDMTKKQGQVKPVDGPP 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             Q++   K++                                  +  L    +++L+ L
Sbjct: 106 GKQKAVDIKDA----------------------------------KAALEKAEEQKLELL 131

Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            +KI  ++          K +L + T  G+ I I+D++N PMF+ + +   P    +L++
Sbjct: 132 KEKIEKSIEDSPTLSKFKKQLLIDITTEGLRIQIVDEQNRPMFESAKAEMQPYAKQILKE 191

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG++L   T  IS+ GHTDA+P+ +      NW LS DRA ++ + L+  G+ E ++ ++
Sbjct: 192 IGQMLNGVTNKISLSGHTDAAPYSSGEKGYSNWELSSDRANASRRELIAGGMDEAKLLRV 251

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            G +   L    DP+N  NRRI I+V ++Q 
Sbjct: 252 VGLSSVSLFDKDDPLNPINRRISIIVMNKQA 282


>gi|237798269|ref|ZP_04586730.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021121|gb|EGI01178.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 346

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     +  S   IDL     ++ N                    
Sbjct: 61  K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L+   Q+    +++  ++E  +   ++ + E                      + +
Sbjct: 89  ----LNPEVQTTPSPDTVPIEAETSETKAEAVEQE----------------------RLE 122

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ+L  K+               +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 123 MLLQELQNKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      +SI GHTDA+PF  +    NW LS +RA +A + L+     + +
Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDAQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|89902463|ref|YP_524934.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89347200|gb|ABD71403.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 314

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 145/339 (42%), Gaps = 62/339 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q II+KK        +  G+WKI YADF+T +MAFFL+MW++ +T +  KK    
Sbjct: 4   DGKKLQPIIVKKIKKGGHVVH-GGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDKK---- 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                         G+ D  + P + S                            Q    
Sbjct: 59  --------------GLSDYFSAPLKVSM---------------------------QGGSG 77

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 +     ++  + S       G D  +      ++  E             +A +
Sbjct: 78  AGGSNTILPGGGADLTQKSGQNRRGDGSDPMQKRMAANAVKAE-------------VAKQ 124

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             K+L  ++ KIS+ +SG        + +  ETT  G+ I I+D +  PMFD  S++  P
Sbjct: 125 DAKKLAGISAKISALISGNTKLTEFSRQIRLETTADGLQIQIVDDQKRPMFDSGSAVVKP 184

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG  L      IS+ GHTD+SP+ +      NW LS DRA ++ + L+ +G+
Sbjct: 185 YMRDILREIGGALNGVENKISLDGHTDSSPYSSAQRGYSNWELSSDRANASRRELVAAGM 244

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +D+++++ G A   L    +P  + NRRI I V  R+ 
Sbjct: 245 PDDKLARVVGLASSILLDPENPTGAVNRRISITVMTREA 283


>gi|83311678|ref|YP_421942.1| flagellar motor protein [Magnetospirillum magneticum AMB-1]
 gi|82946519|dbj|BAE51383.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 344

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 134/334 (40%), Gaps = 20/334 (5%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E  Q IIIK+   +    +  G+WK+ YADF+T +MAFFL++W++NA  ++    +  YF
Sbjct: 3   EGGQQIIIKRVKKVAGGAH-GGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSNYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P   +  ++  G           +Q     S           +  G  +     +    
Sbjct: 62  APTMASKSSSGAGGLLGGKVIGEGAQVSNTSSPSLVQHLPPASIGPGGEDLTGSKEFAPE 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N    S                          + + +   ++   +     ++  A + +
Sbjct: 122 NEGDSSLGPGK----------------GAGQGEGQGAGQGKDRSGMSEQEFKEAQAQREQ 165

Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++     + +   + G+         +L + T  G+ I I DQ    MF   SS P   T
Sbjct: 166 QKFDKAKEVLEGAMKGIPEMKQFQGSMLVDNTPEGLRIQITDQEGLAMFPSGSSAPYGHT 225

Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L  +  V+       I+I GHTDA PFR+     NW LS DRA +  + L+ SGV E
Sbjct: 226 RAMLDLVSRVVRQLPDNRIAISGHTDAIPFRDPSGYTNWELSADRALATRRALIASGVPE 285

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            RI +I G A       +DP    NRRI I++  
Sbjct: 286 GRIDRIVGRADQEPLDKADPKGLRNRRISIILLR 319


>gi|330960099|gb|EGH60359.1| flagellar motor protein MotB [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 341

 Score =  237 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   AI  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  +    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|330984570|gb|EGH82673.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 344

 Score =  237 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     +  S   IDL     ++ N        T           
Sbjct: 61  K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|295690006|ref|YP_003593699.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295431909|gb|ADG11081.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 299

 Score =  237 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 144/334 (43%), Gaps = 46/334 (13%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            ++Q I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF
Sbjct: 4   SSEQPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYF 63

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P                                              ++       +  
Sbjct: 64  AP-------------------------------------------ASISSTTSGSGGILG 80

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +  +S+   +++ + + +  D  +     +S +          +    LA K +
Sbjct: 81  GTSLGDDGAKSDGKMSAIQQMAPEVPDNVEKDG--QSTDTANLSSASEQALRDALAKKEQ 138

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                 A+ +  +L  +     + K +L + T  G+ I ++DQ    MF ++S +P    
Sbjct: 139 DSFASAAQSLRQSLQDMPELAELSKQILIDQTPEGLRIQLVDQEGRSMFQENSKVPNDRA 198

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            ++L+ + +V+      ++I GHT AS +      +W LS  RA ++ Q+L  +GV +DR
Sbjct: 199 RILLRAVAKVITQLPNRVTISGHTSASAYGKKQDGDWSLSASRADASRQILRAAGVDDDR 258

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           I ++SG A+     A DP  + NRRI I++   +
Sbjct: 259 IYQVSGKANSEPLYADDPTLAGNRRISIVLLREK 292


>gi|257482421|ref|ZP_05636462.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009754|gb|EGH89810.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 341

 Score =  237 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|330886588|gb|EGH20249.1| flagellar motor protein MotB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 341

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|320321894|gb|EFW77990.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331001|gb|EFW86975.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872240|gb|EGH06389.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 341

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDYENPTNPVNRRIDIVVLTKKA 274


>gi|260222452|emb|CBA32030.1| Chemotaxis protein motB [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 313

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 146/341 (42%), Gaps = 66/341 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T +  K     
Sbjct: 4   DAKKLQPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDK----- 57

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                        KGI D    P + +                                 
Sbjct: 58  -------------KGISDYFQSPLKVAL-------------------------------- 72

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--A 185
                     Q       S +  +  G DL +S    K     E        +++ +  A
Sbjct: 73  ----------QGGAGAGASNSVITGGGNDLTQSAGQSKRGEGTEKSAKKNAGEQRKIERA 122

Query: 186 MKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            K  + L  LA KI+ST+S           +  E T  G+ I I+D +  PMFD  SS  
Sbjct: 123 KKDAQTLAALAAKIASTISNNPKMAEFSSQIKLEITPDGLQIQIVDDQRRPMFDIGSSSV 182

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302
            P    +L++IG  LA     IS+ GHTD +P+ N A    NW LS DRA ++ + L+ +
Sbjct: 183 KPYMRDILKEIGVTLADVDNKISLDGHTDQTPYGNAARGYSNWELSADRANASRRELIAA 242

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G+ E++++++ G A   L    +P++ ANRRI ILV  ++ 
Sbjct: 243 GMPENKLARVVGMASSLLADPQNPLSPANRRISILVMTKEA 283


>gi|298484924|ref|ZP_07003023.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160611|gb|EFI01633.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 341

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|71737470|ref|YP_272857.1| flagellar motor protein MotB [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71558023|gb|AAZ37234.1| motility protein, MotA family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 341

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|289648637|ref|ZP_06479980.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 350

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|289623746|ref|ZP_06456700.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330865884|gb|EGH00593.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 344

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|66043829|ref|YP_233670.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254536|gb|AAY35632.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330971543|gb|EGH71609.1| flagellar motor protein MotB [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 349

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N                    
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQT------------------ 88

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L+   Q+    +++  ++E  +   ++ + E                      + +
Sbjct: 89  ----LNPEVQTTPSPDTVPLEAENAETKAEAVEQE----------------------RLE 122

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ+L  K+               +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 123 MLLQELQTKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      +SI GHTDA+PF  +    NW LS +RA +A + L+     + +
Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALYDRQNPTNPINRRIDIVVLTKKA 274


>gi|330978961|gb|EGH78020.1| flagellar motor protein MotB [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 346

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     +  S   IDL     ++ N                    
Sbjct: 61  K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L+   Q+    +++  ++E  +   ++ +                          +
Sbjct: 89  ----LNPEVQTTPSPDTVPIEAENAETKAEAVE--------------------------Q 118

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVQENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      +SI GHTDA+PF  +    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHQNPTNPINRRIDIVVLTKKA 274


>gi|120613045|ref|YP_972723.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120591509|gb|ABM34949.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 312

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 62/334 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     + I  YF   
Sbjct: 7   QPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF--- 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                               +S  K+ +   +    +S  +  G  +  K + ++  +  
Sbjct: 63  --------------------ASPLKVAMQGGDGSGNSSSIIPGGGNDLSKVHGQVRRSDS 102

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + S+++        +                                   A + + R+
Sbjct: 103 DTATSRRTNIENARAEQ-----------------------------------ARQDQMRI 127

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + L  KI + +S           +  + T  G+ I I+D +N PMFD  S++  P    +
Sbjct: 128 KALQAKIDALISENPRLKEFKSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG  L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ + ++
Sbjct: 188 LREIGSALGGVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKL 247

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ G A   L    +P    NRRI I +  ++ 
Sbjct: 248 GRVVGLAASDLLEPDNPRAPVNRRITITILTKEA 281


>gi|144899852|emb|CAM76716.1| Flagellar motor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 323

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 140/332 (42%), Gaps = 47/332 (14%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q IIIK+   +    ++ G+WK+ YADF+T +MAFFL++W++NA  ++    I  YF 
Sbjct: 3   EGQQIIIKRVKKVA-AGHHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGISNYFA 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +   +                               +  ++     +       + 
Sbjct: 62  PSMASKSASGA--------------------------GGLLGGQVIGQGAQVSQTSSPSL 95

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           + +L  S      ++  + ++E  + + +    EK                  +A + ++
Sbjct: 96  VQHLPPSSIGPGGEDMTSENTEPMEGMSEEDFREK------------------MAEREQQ 137

Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +     + + + L G+      +G ++ + T  G+ I I DQ    MF   SS     T 
Sbjct: 138 KFDKAKEVLDNALKGIPELKQFEGSMMVDNTPEGLRIQITDQEGLAMFPSGSSAMFGHTR 197

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  +  ++      ISI GHTDA PFR+     NW LS DRA ++ + L+ SGV E+R
Sbjct: 198 ALLDLVSRIVNQMPNKISITGHTDAIPFRDPSGYTNWELSADRALASRRALLGSGVPEER 257

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I +I G A     +  DP    NRRI I++  
Sbjct: 258 IDRIVGRASSEPLVVDDPKAPRNRRISIILLR 289


>gi|120555689|ref|YP_960040.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120325538|gb|ABM19853.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 319

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 69/333 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            +Q IIIK+K  +    ++ GSWK+ +ADF T +MAFFLV+W+      + K A+E YF 
Sbjct: 2   EEQPIIIKRKKKV-VGGHHGGSWKVAFADFATAMMAFFLVLWLTATATPEQKLAVEGYFK 60

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                         D     +  S N +DL     + + +   +  ST Q          
Sbjct: 61  --------------DPVGFTDGGSPNPVDLEGSASVIEEATQDQEASTIQ---------- 96

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                                       +   +++  +  E   +  L +E    ++   
Sbjct: 97  ---------------------------IEDEVVDELADTLEQRRMRQLFQEFQERIENSD 129

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            LQ+   ++                L + T  G+ I I+D+   PMFD         +  
Sbjct: 130 TLQEFKDQL----------------LLDITDEGLRIQIVDRSGRPMFDSGRDELKYYSQD 173

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L ++ + L      ISI GHTDA+PF       NW LS DRA +A + L+  GV  ++I
Sbjct: 174 ILFELAKKLGSVDNKISITGHTDATPFSGRPGYTNWELSADRANTARRALVAGGVRLEQI 233

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +++ G +   L    +P    NRRI I+V +++
Sbjct: 234 ARVVGLSDSVLFDKDNPTAPVNRRISIIVLNKK 266


>gi|227820870|ref|YP_002824840.1| flagellar motor protein MotB [Sinorhizobium fredii NGR234]
 gi|227339869|gb|ACP24087.1| chemotaxis protein motility protein B [Sinorhizobium fredii NGR234]
          Length = 392

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 55/395 (13%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+     N +N+  III K+       ++ G WKI YADFMT +MAFFLVMW+INA +++
Sbjct: 1   MSEESHHNGKNE--IIIVKRSGDGHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK AI  YFNP        ++          +  + +     D   TK+    K G    
Sbjct: 59  TKAAIASYFNPVQLTDQKPAEKGLKNPAKDAQGEETQQRSKSDGEQTKSGGSAKTGDQLT 118

Query: 121 KKQYQR--------LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
               +          EN    LS   +    + +++   E G          +      +
Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAKEAGQQANISAKGEGGAAQSGPATGAEGGEAYRD 178

Query: 173 YFLPPLSKEKILAMKRKKRLQ--------------------------------------- 193
            F P    +++         +                                       
Sbjct: 179 PFDPDFWTKQVEVKDAGNATEGDVADADAGNNPAAGEALKTAEARKGEVPLEQEAEAQQQ 238

Query: 194 -----DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                 L  +I   + G  A  +++G++   +  G+L++I +Q + PMF   S++P  + 
Sbjct: 239 QKEAEALKAEIEKAVGGE-AGRLLEGLVVTPSEGGLLVTISEQTDAPMFAVGSAVPAKDL 297

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++KIG +LA     ++IRGHTD  PF++   DNWRLS  RA SAY +L++ G+ E R
Sbjct: 298 VLAMEKIGTLLAERQGAVAIRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLKEQR 357

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ISGFA  RL++ +DP  +ANRRI+IL++  QG
Sbjct: 358 VNQISGFADRRLQVPNDPYAAANRRIEILLQSGQG 392


>gi|302189799|ref|ZP_07266472.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           642]
          Length = 349

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     +  S   IDL     ++ N        T           
Sbjct: 61  K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIETETAETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVQENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      +SI GHTDA+PF  +    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  R+ 
Sbjct: 239 QVARVVGYASSALYDHQNPTNPINRRIDIVVLTRKA 274


>gi|330873802|gb|EGH07951.1| flagellar motor protein MotB [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 341

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     E+
Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPEE 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G A   L    +P    NRRIDI+V  ++ 
Sbjct: 239 QVARVVGHASSVLYDRDNPTGPINRRIDIVVLTKKA 274


>gi|302062274|ref|ZP_07253815.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato K40]
          Length = 341

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274


>gi|149928472|ref|ZP_01916707.1| flagellar motor protein [Limnobacter sp. MED105]
 gi|149822806|gb|EDM82057.1| flagellar motor protein [Limnobacter sp. MED105]
          Length = 322

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 62/337 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + ++ II+ KK+      ++ G+WKI YADF+T +MAFFL+MW++ +T +   K I  YF
Sbjct: 5   DEERPIIVVKKIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDLKGISDYF 64

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   K  +                      +      T  SV    G+   +   Q    
Sbjct: 65  NSPLKVAL----------------------VGGPGSGTATSVIDAGGTDLSRSVGQIKSG 102

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +    +NS  ++    +L R                                        
Sbjct: 103 STDKATNSSNADATAEALER-------------------------------------AES 125

Query: 190 KRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL +L  +I   +    +       ++ + T  G+ I I+D+RN PMFD  S++     
Sbjct: 126 KRLLELKGEIEGLIDASDLMKQFKNQIMLDITPEGLRIQIVDERNRPMFDSGSAVLKDYM 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ + ++L      +++ GHTDA+P+   N    NW LS DRA ++ + +  +G+ +
Sbjct: 186 KDILRNLTKLLNQVPNKLTLSGHTDATPYAAGNKGYSNWELSADRANASRREMTLAGMPD 245

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ ++ G A        DP  + NRRI I+V +++ 
Sbjct: 246 SKMLRVVGLASSVSLDEKDPYAAVNRRIAIVVMNKRA 282


>gi|330965971|gb|EGH66231.1| flagellar motor protein MotB [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 341

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274


>gi|237653884|ref|YP_002890198.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|237625131|gb|ACR01821.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 330

 Score =  235 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 51/337 (15%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           ++ Q  I+ K++      ++ G+WKI YADF+T +MAFFL+MW++ +T     + I  YF
Sbjct: 3   DDTQQPIVVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGDLEGIADYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  M   +G  D  +         I     E +++    ++ G T   +       
Sbjct: 63  QNPLKLAMQGGEGTGDSSS---------IIKGGGEDLSRKVGQVRRGDTPSTRAINLDAA 113

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S ++ +                                          I   + +
Sbjct: 114 PARVKSEAEATAQA---------------------------------------IAERRER 134

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            RL DL  K+ + +    +       +L +    G+ I ++D +N PMF  +S+   P T
Sbjct: 135 ARLIDLKGKLEAVIEANPSLRQFKNQLLIDIVSEGLRIQLVDAQNRPMFTSASAELRPYT 194

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
             +L++I   L      +S+ GHTD++ +    R   NW LS +RA +A + L+  G+  
Sbjct: 195 RELLREIAAALNDVDNRVSMSGHTDSAQYAGGERGFSNWELSSNRANAARRELVAGGLEA 254

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ ++ G A        DP++ ANRRI I+V +R  
Sbjct: 255 GKMLRVVGLADTAHLNPGDPLDPANRRISIVVLNRAA 291


>gi|254419004|ref|ZP_05032728.1| OmpA family protein [Brevundimonas sp. BAL3]
 gi|196185181|gb|EDX80157.1| OmpA family protein [Brevundimonas sp. BAL3]
          Length = 297

 Score =  235 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 144/333 (43%), Gaps = 51/333 (15%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           +D+ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN TD + KK I +YF 
Sbjct: 2   SDRPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKKGIAEYFA 61

Query: 71  PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P   +  T  S GI       +   ++    S+ E +                       
Sbjct: 62  PASVSETTSGSGGILGGTALGDDGPKSSGSQSVLEQLAP--------------------- 100

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                      E   ++ T  S           L+  I K E       ++    AM+  
Sbjct: 101 -----------EAPADATTAGSSTNLASASEAALQAEIQKREAAEFASAAESLRQAMQSM 149

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L +L+K++                + + T  G+ I ++DQ    MFD +S+ P     
Sbjct: 150 PELAELSKQL----------------IVDQTPEGLRIQLVDQEGRSMFDNNSARPNARAQ 193

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307
           V+L+ + +V+      ISI GHT A+P  N A    +W LS +RA  +  VL  +GV  D
Sbjct: 194 VLLRAVAKVINQLPNRISITGHTSATPGSNRASGPADWTLSSERANGSRLVLQSAGVDAD 253

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+  ++G A        DP  + NRRI I++  
Sbjct: 254 RVYSVAGKAGSDPLYPDDPTLAGNRRIAIVLLR 286


>gi|28872066|ref|NP_794685.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|301384434|ref|ZP_07232852.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302132278|ref|ZP_07258268.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28855319|gb|AAO58380.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331014600|gb|EGH94656.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 341

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274


>gi|104783884|ref|YP_610382.1| flagellar motor protein MotB [Pseudomonas entomophila L48]
 gi|95112871|emb|CAK17599.1| putative flagellar motor MotB protein [Pseudomonas entomophila L48]
          Length = 341

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 131/335 (39%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  I D    P                                       
Sbjct: 61  KDPIGFSESGTPYIIDLGGSP--------------------------------------- 81

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   Q +     +    SE   D     D ++     E      L         + 
Sbjct: 82  --------QLAPEKTINPETKSEPTPDTSIQLDKDQVETMAEQVERERLELLLQELQNKV 133

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +    L K                 +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 134 EENPQLQK-------------FKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGDFGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRENPFNPVNRRIDIIVLTKKA 275


>gi|170723854|ref|YP_001751542.1| flagellar motor protein MotB [Pseudomonas putida W619]
 gi|169761857|gb|ACA75173.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 339

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 133/335 (39%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRYGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D                                            
Sbjct: 61  KDPIGFSESGTPYVIDLGG----------------------------------------- 79

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 + Q +     +    SE   D     D ++     E      L         + 
Sbjct: 80  ------SPQLAPEKTINPEEKSEPTPDTSIQLDKDQVETMAEQVERERLELLLQELQNKV 133

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +    L K                 +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 134 EENPQLQK-------------FKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      IS+ GHTDA P+  +    NW LS +RA +A + L+  G  +D+
Sbjct: 181 DILLAMADTIKAVPNKISVSGHTDAKPYSGSSEFGNWELSANRANAARRALVAGGYPDDQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275


>gi|326319083|ref|YP_004236755.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375919|gb|ADX48188.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 312

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 62/334 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     + I  YF   
Sbjct: 7   QPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF--- 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                               +S  K+ +   +    +S  +  G  +  K + ++  +  
Sbjct: 63  --------------------ASPLKVAMQGGDGSGNSSSIIPGGGNDLSKVHGQVRRSDS 102

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + S+++        +                                   A + + R+
Sbjct: 103 DTATSRRTNIENARAEQ-----------------------------------ARQDQMRI 127

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + L  KI + +S           +  + T  G+ I I+D +N PMFD  S++  P    +
Sbjct: 128 KALQAKIDALISENPRLKEFKSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG  L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ + ++
Sbjct: 188 LREIGAALGGVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKL 247

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ G A   L    +P    NRRI I V  ++ 
Sbjct: 248 GRVVGLAASDLLEPENPRAPVNRRITITVLTKEA 281


>gi|213967914|ref|ZP_03396060.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1]
 gi|213927257|gb|EEB60806.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1]
          Length = 341

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   +   + E       +
Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  N    NW LS +RA +A + L+     + 
Sbjct: 179 EGILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274


>gi|114797285|ref|YP_758982.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444]
 gi|114737459|gb|ABI75584.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444]
          Length = 287

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 52/328 (15%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
             IIK+K       ++ G+WK+ YADF+T +MAFFL+MW++NAT ++ +K I  YFNP  
Sbjct: 10  PTIIKRKKVYKADGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYFNPTI 69

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                +  G                 L+     ++++        N+K+  +        
Sbjct: 70  PISRISGGG--------------SDGLNGSSIFSEDTYAKMGTGANRKETVENPAYGDGK 115

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             ++Q      ++L + +E                                    +K++ 
Sbjct: 116 TKDAQDQTEDVDTLAKQAE------------------------------------EKQIA 139

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D  + +  +LS   +  + + ++ + +  GI++ I D  +TP+F    S P    + ++ 
Sbjct: 140 DELQGLKESLSAE-SRQLSEHLMIKMSPEGIVLEITDSESTPLFPLGRSEPSETMVQLID 198

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + E  A     I I GHTD+  +RN A  DNW LS DRA +A ++L ++ +  DRI ++
Sbjct: 199 VVAESFAEFDNDIKIVGHTDSHRYRNGAIYDNWNLSADRANAARRLLSRADIPSDRIREV 258

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340
           SG A     +  DP  + NRRI I +  
Sbjct: 259 SGKADTDPLVKDDPQAAQNRRISITILT 286


>gi|288958120|ref|YP_003448461.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288910428|dbj|BAI71917.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 386

 Score =  234 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 140/328 (42%), Gaps = 19/328 (5%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG--------- 82
           +WK+ YADF+T +MAFFL++W++N T  D +K I  YF+P   +   +  G         
Sbjct: 28  AWKVAYADFVTAMMAFFLLLWLLNVTTSDQRKGIADYFSPVSVSREQSGSGGMLGGKTIT 87

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE- 141
           +   Q  P       + +S     +    D     T       +          +  ++ 
Sbjct: 88  VPGAQVSPSSPMSADVPVSGPPGYSSQQSDDADDPTEATSGPGQGTGPGKPAKAAPDADI 147

Query: 142 ---HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL----AMKRKKRLQD 194
                  +     ++ +++ K   +      E+        KE +     A K  ++ Q 
Sbjct: 148 ADQKPNETRAEFQKRMEEMAKQLGIPGQKPGEKLSDFGERVKEAMNSLQGAAKEARQFQQ 207

Query: 195 LAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            A +I   +  +   + + + ++ + T  G+ I I+DQ    MF   S    P+T  ++Q
Sbjct: 208 AATEIRQAIQSVPELEPLAQNLMIDQTPEGLRIQIVDQDRVSMFPAGSGQMYPQTRQLVQ 267

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           ++ + L      +SI GHTD+SPF     RDNW LS +RA +  + L+  G++  RI  +
Sbjct: 268 QVAKALTKLPNKLSISGHTDSSPFPAGSGRDNWDLSTERANATRRALLAGGINPSRIQNV 327

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340
            G A     +A  P +  NRRI +++  
Sbjct: 328 VGKADTDPLVADQPNSPRNRRITMVLLR 355


>gi|77456741|ref|YP_346246.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf0-1]
 gi|77380744|gb|ABA72257.1| chemotaxis MotB protein [Pseudomonas fluorescens Pf0-1]
          Length = 355

 Score =  234 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRIAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  I D    P  + +N ++                              
Sbjct: 61  KDPVGFSESGTPYIIDLGGTPTLAPENTLN------------------------------ 90

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                            +    +  K    +  +E    + E   L  L +E    +   
Sbjct: 91  ---------------PEVKSQPQPDKVTVDTEQVEGMAEQVEKERLELLLQELQNKVDEN 135

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T  G+ I I+D  N PMFD  S+   P   
Sbjct: 136 PQLQKFKDQI----------------LFEITPNGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+  N    NW LS +RA +A + L+     + +
Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYVGNGDFGNWELSANRANAARRALVAGSYPDSQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALFDKENPFNPVNRRIDIVVLTKKA 274


>gi|146305660|ref|YP_001186125.1| flagellar motor protein MotB [Pseudomonas mendocina ymp]
 gi|145573861|gb|ABP83393.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 329

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V  +   ++ G+WKI +ADF T +MAFFLVMW++++   + KKAI  YF
Sbjct: 2   ENNQPIIVKR-VKKNAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E +S + IDL        +                    
Sbjct: 61  Q--------------DPIGFTESASPHAIDLGGSPTPAPDR------------------- 87

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                            +   +E       +  +E   +K E   L  + +E    ++  
Sbjct: 88  ------------TLNPEIQDLTESRDVDIDADQVESLADKLERERLELVLQELQNKVEEN 135

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             LQ    +I                LFE T+ G+ I I+D  N PMF   S+   P   
Sbjct: 136 PELQRFKDQI----------------LFEITQDGLRIQIVDAENRPMFALGSANLQPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA PF       NW LS +RA +A + L+  G ++++
Sbjct: 180 DILLAMADTIRAVPNKISISGHTDAKPFVGRGDFGNWELSANRANAARRALIAGGYADEQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L   +DP N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALFDRNDPFNPVNRRIDIVVLTKKA 274


>gi|323529505|ref|YP_004231657.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323386507|gb|ADX58597.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 328

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 137/345 (39%), Gaps = 64/345 (18%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
            S G++ +     I+ + K A D   ++ G+WKI YADF+T +MAFFL+MW++ +T    
Sbjct: 5   RSRGEEQEVPPPIIVRRSKKADDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFD 64

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           K+                  GI D  N P  S                            
Sbjct: 65  KQ------------------GIEDYFNTPLSSLLG------------------------- 81

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                          ++ +   + S+ +   +     +  D +K+  +       P++  
Sbjct: 82  --------------GNEGAAAARPSVVQGGGRDISDTRPGDGKKTQIEAAT----PVNVV 123

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +A     RLQ L +K+ S +    A       +    T  G+ I I+D +N PMF   
Sbjct: 124 PTVAPADAARLQQLKEKLISLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298
           S       + +L +IG  L      ISI GHTDA P+        NW LS +RA +A + 
Sbjct: 184 SPRLQTYAVAILTQIGAALNDVDNRISIAGHTDAVPYTGGPVGYSNWELSSERANAARRA 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           L+  G+  +++ ++ G A      ++      NRRI ILV ++  
Sbjct: 244 LVSGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 288


>gi|212637803|ref|YP_002314328.1| MotB protein [Shewanella piezotolerans WP3]
 gi|212559287|gb|ACJ31741.1| MotB protein [Shewanella piezotolerans WP3]
          Length = 330

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 44/330 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             + I+I++K      P + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY  
Sbjct: 4   RPEPIVIRRKKRTKAKPGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLK 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
             G    T S   FD    P     + ID   +  I +  +       ++          
Sbjct: 64  --GDLYSTGSINPFDLSRSP-----SLIDFQGNIAIQQAVLPATSTGVDRSGPAMHNHIP 116

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +                              +++  I  E N  +P          + + 
Sbjct: 117 L---------------------------GKDNVKAGIGPELNSLVPG-------KFETQA 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ LA++I   ++ +  +     V  +    G+ I + D  N  MF + SS   P    
Sbjct: 143 QLEFLAREIEQVITDVSMNA---NVELQVVPQGVRILMHDNINQFMFTRGSSNMKPYFED 199

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G +L      +SI GHTD+SP+      NW LS  RA  A +VL  SGV  D++ 
Sbjct: 200 LLMALGPILGKVENKMSISGHTDSSPYAGKTFTNWELSSKRALLARRVLEYSGVQRDQVI 259

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++G A     IA DP  +ANRRI++LV  
Sbjct: 260 QVTGMADQAPYIADDPAAAANRRIEMLVMT 289


>gi|312958642|ref|ZP_07773162.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311287185|gb|EFQ65746.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 339

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D    PE + +  I+                              
Sbjct: 61  KDPIGFSESGTPFVIDLGGSPELAPERTIN------------------------------ 90

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                            +  ++ + K   +   +E    + E   L  L +E    ++  
Sbjct: 91  ---------------PEVKTEAPQEKIPIERDTVETMAEQVEQERLELLLQELQNKVEEN 135

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++     +IS                FE T  G+ I I D  N PMFD  S+   P   
Sbjct: 136 PQMMKFKDQIS----------------FEITPEGLRIQITDAANRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+     + +
Sbjct: 180 DILLAMADTIKTVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ GFA  +L    DP N ANRRIDI+V  ++ 
Sbjct: 240 VARVVGFASSQLFDHKDPFNPANRRIDIVVLTKKA 274


>gi|288942642|ref|YP_003444882.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288898014|gb|ADC63850.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 305

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 57/318 (17%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ G+WKI +ADF T +MAFF+++WI+ +T +D K AI  YFN      M  +     
Sbjct: 19  GGHHGGAWKIAFADFATAMMAFFMLLWIMGSTTEDQKAAISDYFNNPSV-FMGIATSPSQ 77

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            Q     S  + ID      +   + + ++ + +                          
Sbjct: 78  AQGEGTGSKPSLIDFEGAIDMGPPTPEPELTALDP------------------------- 112

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                 E+  +L +  D  +                    +   K L +     S TL+ 
Sbjct: 113 ------ERLDELAREQDAAR--------------------LAALKELLERKLDQSETLAP 146

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
                ++  V       G+ + I+D+ +  MFD  S+     T  +L+++G ++      
Sbjct: 147 YKDQLLIDIV-----PEGLRVQIVDKEHRSMFDLGSAKLKDYTSDILRELGGLINQVPNR 201

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           IS+ GHTDA P   ++  NW LS +RA +A + L+  G+  D++ ++ GFA       SD
Sbjct: 202 ISLTGHTDARPLGGLSYSNWELSTERANAARRALVAGGMRADKVGRVVGFASTVPFDTSD 261

Query: 326 PMNSANRRIDILVEDRQG 343
           P N  NRRI ++V  R+ 
Sbjct: 262 PNNPINRRISLIVMTREA 279


>gi|190572619|ref|YP_001970464.1| flagellar motor protein MotB [Stenotrophomonas maltophilia K279a]
 gi|190010541|emb|CAQ44150.1| putative chemotaxis protein [Stenotrophomonas maltophilia K279a]
          Length = 312

 Score =  232 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 59/334 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN   +I+++        ++ GSWK+ YADF+T +MAFFLV+W++  T+ + + AI +YF
Sbjct: 3   ENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +  +   P          S        + D+  G++N    +Q  + 
Sbjct: 63  R--------NPSPLSGQNATPAPGMAGPGGASTSMIKLGGATDISRGNSNDP--FQNQKE 112

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +    + QQ                                               + K
Sbjct: 113 AVPQPVDQQQ-----------------------------------------------RDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L+ L K++   +S   A +     +L + T  G+ I I+D++N PMFD  S+   P T
Sbjct: 126 QQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++ E L H    IS+ GHTD + +       NW LS DRA +A + L+  G+ + 
Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALVDGGLEDS 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +I+++ G +   L   +DP N  NRRI I+V  +
Sbjct: 246 KITRVVGLSSSVLFDKTDPQNPINRRISIVVMTK 279


>gi|70734060|ref|YP_257700.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf-5]
 gi|68348359|gb|AAY95965.1| motility protein, MotB family [Pseudomonas fluorescens Pf-5]
          Length = 372

 Score =  232 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 133/335 (39%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRFAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  I D                                            
Sbjct: 61  KDPIGFSESGTPYIID-------------------------------------------- 76

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +               +    +  K    +  +E    + E   L  L +E    ++  
Sbjct: 77  -LGGSPELAPDNTLNPEIKSQPQPDKVTVDADQVEGMAEQVERERLELLLQELQNKVEEN 135

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T  G+ I I+D  N PMFD  S+   P   
Sbjct: 136 PQLQKFKDQI----------------LFEITPDGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 180 DILLAMADTIKTVPNKISISGHTDAKPYSGTGDFGNWELSANRANAARRALVAGGYPDPQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ GFA   L    DP N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGFASSALFDRKDPFNPVNRRIDIVVLTKKA 274


>gi|167035946|ref|YP_001671177.1| flagellar motor protein MotB [Pseudomonas putida GB-1]
 gi|166862434|gb|ABZ00842.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 350

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 62/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q II+K+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                          D     E  +   IDL     +               ++      
Sbjct: 61  K--------------DPIGFSESGTPYVIDLGGSPELAPEKTINPEVKAEPTQEST---- 102

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                     ++  K+ +   +E+ +       L++  NK E                  
Sbjct: 103 ----------TQLSKDQVETMAEQVERERLELLLQELQNKVE------------------ 134

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                                    +LFE T+ G+ I I+D  N PMFD  S+   P   
Sbjct: 135 --------------ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+  G  + +
Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEFGNWELSANRANAARRALVAGGYPDGQ 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275


>gi|330807221|ref|YP_004351683.1| Chemotaxis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375329|gb|AEA66679.1| Chemotaxis protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 344

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 136/335 (40%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRIAAGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  I D    P  +    ++                              
Sbjct: 61  KDPVGFTESGTPYIIDLGGSPTLAPDTTLNPE---------------------------- 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                            +    +  K    +  +E    + E   L  L +E    ++  
Sbjct: 93  -----------------VKSQPQPDKVTTDTEQVEGMAEQIERERLELLLQELQNKVEEN 135

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +LQ    +I                LFE T  G+ I I+D  N PMFD  S+   P   
Sbjct: 136 PQLQKFKDQI----------------LFEITPNGLRIQIMDAENRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+     +++
Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYVGKGDFGNWELSANRANAARRALVAGSYPDEQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G+A   L    DP N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGYASSALFDRKDPFNPVNRRIDIVVLTKKA 274


>gi|89072298|ref|ZP_01158877.1| chemotaxis LafU protein [Photobacterium sp. SKA34]
 gi|89051830|gb|EAR57282.1| chemotaxis LafU protein [Photobacterium sp. SKA34]
          Length = 331

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 133/333 (39%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N + I+ K+ V       + G+WK+ +ADFM  LMA FLV+W++   D+  + AI  YF
Sbjct: 2   QNTEQIVFKRAVKRHSHQQHGGAWKVAFADFMIALMALFLVLWLLQVVDEKERTAIVAYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N         S   FD  N P     + ID   D                          
Sbjct: 62  NNSSV-FDEGSGNPFDTDNSP-----SPIDFGGD-------------------------- 89

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 ++Q +     S+   +  G               E +  +P        + + +
Sbjct: 90  --AADMSAQNAAMTMKSIYNGNGNGP--------------ESDALIPG-------SFETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LA  +  T   + A      +  + T  G+ +++ D     MF + ++   P   
Sbjct: 127 EQLSILASVVEETAKQVSAQG---NIAIDITPQGLRVTLQDDFKQNMFHRGNANLTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            VL  I  +    +  I I GHTDA+ F+N    + NW LS  RA  A Q L+  G+  D
Sbjct: 184 DVLLTIAPIFKQISNSIIISGHTDATQFKNRFSRQTNWELSSSRANVARQTLISGGMPSD 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G A   L    DP  S NRRI++ V  
Sbjct: 244 RVLQVAGMAERALLNKQDPSASENRRIELFVLT 276


>gi|167626173|ref|YP_001676467.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167356195|gb|ABZ78808.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 336

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 44/330 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             + ++I++K        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY N
Sbjct: 4   RPEPVVIRRKKRSKAKAGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLN 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
             G      S   F+    P                     D +     Q+         
Sbjct: 64  --GDLHDDGSINPFNLGGAPSM------------------FDFQGNIAIQQAVLPAAATG 103

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +     +  +   + +    + +G +L      +                      + + 
Sbjct: 104 VERSGPAMHNRIPQGTENAKAGRGPELNSLVPGK---------------------FETQA 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ LAK+I   +  +   ++   V  +    G+ I + D  N  MF + S+   P    
Sbjct: 143 QLEFLAKEIDKVIENV---SMSANVELQVVPQGVRILMHDNVNQFMFTRGSADMKPYFED 199

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G +L+     I+I GHTD+SP+      NW LS  RA  A +VL   G+   ++ 
Sbjct: 200 LLMALGPLLSQVENKITISGHTDSSPYAGKKFTNWELSSKRALLARRVLEYGGLRRHQVI 259

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++G A     +  DP  +ANRRI++LV  
Sbjct: 260 QVTGMADQAPYVIKDPAAAANRRIEVLVMT 289


>gi|312115287|ref|YP_004012883.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220416|gb|ADP71784.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 358

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 16/356 (4%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           +   KN+     I+++KK+   D  N+ G WKI YADFMT +M FFLVMW++N++  +  
Sbjct: 2   ARHKKNERAHADIVVRKKLYRSDGDNHGGVWKIAYADFMTAMMTFFLVMWLVNSSSKERL 61

Query: 63  KAIEQYFNP-------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
             I  YFNP            + A+     +++P      + +    D H+       + 
Sbjct: 62  SQIANYFNPVKLNEHAPPAKDVAATAPKAQDKSPAAGRPNSAVVDPKDRHVFSEEELTRN 121

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK------DLCKSTDLEKSINK 169
                 +   + E  +   S  Q S      L+RD    +          ++   ++   
Sbjct: 122 PFGVLTQLATQAEEALRIASKEQDSSAAAGQLSRDPFVAEPRLVRTAKVSTSSGSQTAPG 181

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA---DNIVKGVLFETTRTGILI 226
           E +          +   +RK+    LA++I   +    +    +    V       G LI
Sbjct: 182 EWSDAPKSHKSANVAETERKEPAASLAEQILKDIESFQSNLPQSFRVQVSVAGVAEGTLI 241

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           S++D     MFD  S++P P+T++V+ +IG++++     I IRG+TD  PF      NW 
Sbjct: 242 SLMDDTKRSMFDVGSAMPKPDTVLVMTRIGDIISKYPGKIIIRGYTDGRPFAGDRYGNWV 301

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           LS  RA  A+ +L +  + + R+  I G+A  + + A DP+   NRRI++L++D +
Sbjct: 302 LSSQRARMAFLMLARGKIGDGRVLSIEGYADRQPRNADDPLAPENRRIEVLLKDSE 357


>gi|83955101|ref|ZP_00963757.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1]
 gi|83840430|gb|EAP79603.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1]
          Length = 394

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 16/332 (4%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q  + KK   I+   ++ G WK+ YADFMT +MAFFL+MWI+++ D+   + I +YF   
Sbjct: 6   QPRVFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFT-- 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
               +    G+ D        +      + +  I     +L         +++  +    
Sbjct: 64  -NATLPGGSGVLDGATLGPPGTLT----ASNGAIVARGSELGKIDDPASAKWEIRDETAT 118

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
            + +  Q      +    +         T  + S +  +       + +        ++ 
Sbjct: 119 SVPDETQIGSEDGAHENPAAANVASASQTASDGSKSAGDATIDNVHALDN-------EKF 171

Query: 193 QDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + L + I   +      D + K ++F+ T  G+ I IIDQ   PMF    +     T  +
Sbjct: 172 KKLEQDILQAMQENPDLDPLKKNLIFQQTPEGLQIQIIDQEGQPMFYSGRAEMQGATDQL 231

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +G+ LA     I++ GHTDA  F N    DNW LS DRA +  +V   SGV+ DRI 
Sbjct: 232 LANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRANATRRVFEASGVARDRII 291

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++SG A     +  +P +++NRRI + V+ ++
Sbjct: 292 RVSGLADTAPLVPENPTDASNRRITVSVQYQK 323


>gi|241763663|ref|ZP_04761713.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241367138|gb|EER61504.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 310

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 62/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     +     
Sbjct: 3   EKKLQPIIIKRIKKSGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQ----- 56

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI    N P + +    D + +                      ++ 
Sbjct: 57  -------------GIAAYFNSPLKVAMVGGDGAGNSSSVIPGG---------GNDLSKVH 94

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +    + Q  E   +  T  +E+                               A + 
Sbjct: 95  GQVRRSDSDQDKERRASIDTTRAER-------------------------------AKQD 123

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             R++ L  KI + +      +     +  + T  G+ I I+D +N PMFD  S++  P 
Sbjct: 124 AARIKALQAKIDAMITENPRLNEYKSQIRIDVTPDGLQIQIVDNQNRPMFDSGSALVKPY 183

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG  L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 184 MRDILREIGAALGGVENRISLAGHTDAAPYGNSDRGYSNWELSADRANASRRELVSAGMP 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + ++ ++ G A   L    +P   ANRRI I V  R+ 
Sbjct: 244 DAKLGRVVGLAASDLLEPDNPRAPANRRITITVLTREA 281


>gi|83944198|ref|ZP_00956654.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36]
 gi|83845065|gb|EAP82946.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36]
          Length = 394

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 145/332 (43%), Gaps = 16/332 (4%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q  + KK   I+   ++ G WK+ YADFMT +MAFFL+MWI+++ D+   + I +YF   
Sbjct: 6   QPRVFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFT-- 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
               +    G+ D        +      + +  I     +L         +++  +    
Sbjct: 64  -NATLPGGSGVLDGATLGPPGTLT----ASNGAIVARGSELGKIDDPASAKWEIRDETAT 118

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
            + +  Q      +    +            + S +  +       + +        ++ 
Sbjct: 119 SVPDETQIGSEDGAHENPAAANVASASQAASDGSKSAGDATIDNVHALDN-------EKF 171

Query: 193 QDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + L + I   +      D + K ++F+ T  G+ I IIDQ   PMF    +     T  +
Sbjct: 172 KKLEQDILQAMQENPDLDPLKKNLIFQQTPEGLQIQIIDQEGQPMFYSGRAEMQGATDQL 231

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +G+ LA     I++ GHTDA  F N    DNW LS DRA +  +V   SGV+ DRI 
Sbjct: 232 LANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRANATRRVFEASGVARDRII 291

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++SG A     +  +P +++NRRI + V+ ++
Sbjct: 292 RVSGLADTAPLVPENPTDASNRRITVSVQYQK 323


>gi|152980289|ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille]
 gi|151280366|gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 328

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 63/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            E  + IIIK+ +      ++ G+WKI YADF+T +MAFFL+MW++ +T     +     
Sbjct: 3   DEGLRPIIIKR-IKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQ----- 56

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI D  + P + +      S D           +   + +++     
Sbjct: 57  -------------GIADFFSTPLKVAMAGGSGSGDSSSVIKGGGKDMTRIDGQQK----- 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                   KG+DL  + +      + E            L  + 
Sbjct: 99  ------------------------KGEDLTPAKNFNLKAAEAE------------LERQE 122

Query: 189 KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             RL+ L ++I   +  +         +L + T  G+ I I+D++N PMF  + +   P 
Sbjct: 123 VNRLKALKERIEKAIDTIPGLQQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
           T V+L +I ++L      IS+ GHTDA+P+ +      NW LS DRA ++ + L+  G++
Sbjct: 183 TKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMA 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E+++ ++ G +   L  +SDP+N  NRRI I+V +++ 
Sbjct: 243 ENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKA 280


>gi|148359858|ref|YP_001251065.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby]
 gi|296107908|ref|YP_003619609.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy]
 gi|148281631|gb|ABQ55719.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby]
 gi|295649810|gb|ADG25657.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy]
          Length = 312

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 63/335 (18%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N  +  I +K+  +D  ++ GSWKI YADF+T +MAFFL+MW++ + +   K  I +YF 
Sbjct: 27  NTHYTPIIRKIKKNDHKHHGGSWKIAYADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFK 86

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +   + + + +   +    N  D                               
Sbjct: 87  QPMKMALFGGESMGNRKATIKGGGPNIED------------------------------- 115

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               ++ Q S   K  +     K K++ +S   E                         K
Sbjct: 116 ----TDGQVSATNKPLINESIAKDKEIVESQANEI------------------------K 147

Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +L++L  +I+ ++    +   + K +L +    G+ I +ID +  PMFD  S    PE  
Sbjct: 148 KLEELKSEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIE 207

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSE 306
            +L  I ++L      I+I+GHTDA+P+ N       NW LS  RA +A + L+K+G+ E
Sbjct: 208 PILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDE 267

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +++  ++G++   L    +P N  NRRI I+V  +
Sbjct: 268 NKVMTVTGYSSTVLLDKKNPYNPENRRISIIVMKK 302


>gi|300312289|ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1]
 gi|300075074|gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 139/338 (41%), Gaps = 63/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            E  + II+K+ +      ++ G+WKI YADF+T +MAFFL+MW++ +T           
Sbjct: 3   DEGLRPIIVKR-IKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDL------ 55

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI +    P + +      S D     N+V    G    ++  Q  +
Sbjct: 56  ------------NGIAEYFKTPLKVAMAGGSGSGDA----NTVLPGGGKDLTRQDGQLRK 99

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 +  Q  +  +  L +                                       
Sbjct: 100 GETDVTARKQNLKQAQQELEKM-------------------------------------E 122

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           + RL++L  ++   + S          +L + T  G+ I I+D++N PMF  +S+   P 
Sbjct: 123 RTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
           T  +L +IG  L      IS+ GHTDA+P+        NW LS DRA ++ + L+  G+ 
Sbjct: 183 TKEILHEIGRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMD 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E ++ ++ G +   L    DP N  NRRI I+V +++ 
Sbjct: 243 ESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKA 280


>gi|82702437|ref|YP_412003.1| flagellar motor protein MotB [Nitrosospira multiformis ATCC 25196]
 gi|82410502|gb|ABB74611.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 308

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 142/337 (42%), Gaps = 64/337 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    I+IKK         + G WKI YADF+T +MAFFL+MW++ +      + I  YF
Sbjct: 3   QTQHRIVIKKVRRQSQG--HGGQWKIAYADFVTAMMAFFLLMWLLGSATRAQLQGISDYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +   ++ PER   +    S+ +   K+                    
Sbjct: 61  -------------MKPLESVPERDIGSGDRTSLIQGGGKDL------------------- 88

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                      + +   ++K+        L   + +  L  +  
Sbjct: 89  ---------------------------MRRDGQVQKTDVDSSEKPLSLRAAQLELERRDA 121

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+DL +++   + S        K +L + T  G+ I IID +N PMF  + +   P T
Sbjct: 122 RRLEDLKRRLERLIESNPTMHEFRKQLLLDITTEGLRIQIIDDKNRPMFALARAELEPHT 181

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +LQK+G VL      +S+ GHTD++P+ +      NW LS DRA ++ + L+  G++E
Sbjct: 182 REILQKLGSVLNEMPNKLSLSGHTDSTPYASGEKNYSNWELSADRANASRRELILGGMNE 241

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +I ++ G +   L   +DP N  NRRI I+V   + 
Sbjct: 242 QKIMRVVGLSSAVLFDRNDPTNPVNRRISIIVMSNRA 278


>gi|153836044|ref|ZP_01988711.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810]
 gi|149750798|gb|EDM61543.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810]
          Length = 330

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++                             
Sbjct: 93  --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I    + + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G+
Sbjct: 181 FFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276


>gi|28901412|ref|NP_801067.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362966|ref|ZP_05775835.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030]
 gi|260880253|ref|ZP_05892608.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034]
 gi|260895370|ref|ZP_05903866.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466]
 gi|1346409|sp|Q03478|LAFU_VIBPA RecName: Full=Chemotaxis protein LafU
 gi|677910|gb|AAA62355.1| LafU [Vibrio parahaemolyticus]
 gi|1518954|gb|AAB07358.1| lateral flagellar MotB [Vibrio parahaemolyticus]
 gi|28809959|dbj|BAC62900.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085707|gb|EFO35402.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466]
 gi|308092138|gb|EFO41833.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034]
 gi|308111945|gb|EFO49485.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030]
          Length = 330

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++                             
Sbjct: 93  --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I    + + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G+
Sbjct: 181 FFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276


>gi|188592087|ref|YP_001796685.1| flagellar motor protein motb [Cupriavidus taiwanensis LMG 19424]
 gi|170938461|emb|CAP63448.1| Chemotaxis protein MotB; Flagellar motor rotation, linking torque
           machinery to cell wall [Cupriavidus taiwanensis LMG
           19424]
          Length = 321

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 135/339 (39%), Gaps = 68/339 (20%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +  +D   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T + I +
Sbjct: 2   SSAHDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAE 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF                           K+ +   E  +++   +  G  +  ++   +
Sbjct: 62  YFRMPL-----------------------KVAIVGGEKSSQSPSVIPGGGMDVMRKDGEI 98

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                   + +Q                                          +    +
Sbjct: 99  MRAHDNDPSDEQ------------------------------------------RRNEQQ 116

Query: 188 RKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +RL+ L +++   +    V       +L + T  G+ I I+D +N PMF   S+    
Sbjct: 117 EAQRLRALKQRLEQIIENNPVLRQFRPQLLLDITSEGLRIQILDTQNRPMFRTGSATVES 176

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG VL      +S+ GHTDA+ + N      NW LS DRA ++ + L+  G+
Sbjct: 177 YMRTILREIGPVLNELPNKVSLSGHTDAANYSNGERTYSNWELSGDRANASRRELIAGGM 236

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            E ++ ++ G A        D +   NRRI I+V +++ 
Sbjct: 237 QEGKVLRVLGLAATMPLDKQDLLAPVNRRISIVVLNQKA 275


>gi|284007193|emb|CBA72482.1| flagellar motor protein MotB [Arsenophonus nasoniae]
          Length = 320

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 120/318 (37%), Gaps = 74/318 (23%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
             + GSWKI YADFMT +MAFFLVMWI++ +       I  YF    K  +         
Sbjct: 20  HYHGGSWKIAYADFMTAMMAFFLVMWILSISSPQELIRIADYFRTPLKVSLN-------- 71

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
            N P+      I     + IT    D      NQ                          
Sbjct: 72  -NGPKSGDVTNIIPGGGKDITYREGDTLPKEPNQ-------------------------- 104

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
                               + + E      L ++  L +    RLQDL           
Sbjct: 105 --------------------LPETEQDRFKKLQQDLELLIMNDPRLQDLK---------- 134

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
                   +L +    G+ I IID  N PMF   S++       +L  +  VL      I
Sbjct: 135 ------PNLLIDLMDEGLQIQIIDGENRPMFASGSAVIDKNMQKILHVLAPVLNDYPNKI 188

Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           S+ GHTD++ +        NW LS DRA S+ + L+  G+ E +I ++ G A       +
Sbjct: 189 SLAGHTDSTAYAKGGYGYSNWELSADRANSSRRTLISGGLDEHKIMRVVGMASTVPLE-N 247

Query: 325 DPMNSANRRIDILVEDRQ 342
           +P  +ANRRI ILV +++
Sbjct: 248 NPAAAANRRISILVLNKE 265


>gi|145297473|ref|YP_001140314.1| LafU [Aeromonas salmonicida subsp. salmonicida A449]
 gi|22758827|gb|AAN04225.1| LafU [Aeromonas salmonicida]
 gi|142850245|gb|ABO88566.1| LafU [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 315

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 48/334 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            N + IIIK++      P   G+WK+ +ADF   +MAFF+V+WI+  +  + ++A+    
Sbjct: 2   RNHEQIIIKRQQRRSSAPKGGGAWKVAFADFTLAMMAFFMVLWILAVSSQEEREAVASRL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
             +  ++M +    FD  N P       +DL  +  + +                     
Sbjct: 62  RDY--SIMDSEANPFDISNSP-----YPVDLGGNPSVLEELSP----------------- 97

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                              +  E+G+ + K  +  +SI    +          +  ++ +
Sbjct: 98  -------------------KFVEEGQRMPKHMERNRSIFS--DGVSGGYENLLVGKIEGE 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +++ LA  I S    + A N    +  +    G+ I I D     M+ + S+   P   
Sbjct: 137 AQMKQLAGFIGSLADQMQAKN---NLELQLVPQGLRILIRDDDEREMYSRGSARISPFFR 193

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +  +       + I GHTD++PF      NW LS DRA  A +VL+  G+  +R+
Sbjct: 194 HMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLLAGGMPPERV 253

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++   +   L+  +DP  S NRRI++LV   Q 
Sbjct: 254 GQVVAMSDTMLENTADPRGSENRRIELLVMTSQA 287


>gi|283784104|ref|YP_003363969.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168]
 gi|282947558|emb|CBG87111.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168]
          Length = 331

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 140/343 (40%), Gaps = 52/343 (15%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    ++     +  II++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKAANRRDRGAKTTIIRRQIKKNHGGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKT 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    +                Q+         ++    + I   +    +  +  
Sbjct: 61  ERENIVAALH---------------GQSIFNGGGLAPLNKIGKQTIVPGASSKSVTRSRP 105

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
            K     E                    + SE+     K  + + ++ K+++        
Sbjct: 106 DKASPAKEE------------------VKVSEEVAKKAKDVNEKTALLKKKSATELGELA 147

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             I ++ RK  ++                     +  E    G+ + I D +N  MF++ 
Sbjct: 148 TSIQSIARKAHME-------------------TNLEMEIVPQGLRVLIKDDKNRNMFERG 188

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S+  +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL 
Sbjct: 189 SARIMPFFQSLLTELAPVFDSLDNKIIITGHTDAMAYKSDIYNNWNLSGDRALSARRVLE 248

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 249 QAGMPEDKVMQVSAMADQMLLDAKNPESAGNRRIEIMVLTKSA 291


>gi|149377734|ref|ZP_01895468.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149357960|gb|EDM46448.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 319

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 137/333 (41%), Gaps = 69/333 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            +Q II+K+K  +    ++ GSWK+ +ADF T +MAFFLV+W+      +  +A+E YF 
Sbjct: 2   EEQPIIVKRKKKVA-AGHHGGSWKVAFADFATAMMAFFLVLWLTATASPEQIRAVEGYFK 60

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                         D     E  S N +DL     +   S +                  
Sbjct: 61  --------------DPVGFTEGGSPNPVDLEGSASVINESSED----------------- 89

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               S+ Q  +     L +  E+ +      DL++ I                    + +
Sbjct: 90  -IERSDIQIEDQVVEELAQTLEQQQMEELFQDLKERIE-------------------QNE 129

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            LQ+   ++                L + T  G+ I I+D+   PMFD   +     +  
Sbjct: 130 TLQEFKDQL----------------LIDITSEGLRIQIVDRSQRPMFDSGRAELKYYSQD 173

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L ++ + L      +SI GHTD++PF       NW LS DRA +A + L+  GV +++I
Sbjct: 174 ILFELAKTLGTVNNKLSITGHTDSTPFSGRPGYTNWELSADRANTARRALVAGGVRQNQI 233

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++ G +   L    DP    NRRI I+V +++
Sbjct: 234 GRVVGLSDSVLFDQDDPQAPVNRRISIIVMNKK 266


>gi|328469346|gb|EGF40292.1| chemotaxis LafU protein [Vibrio parahaemolyticus 10329]
          Length = 330

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++                             
Sbjct: 93  --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I    + + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  +    T  + I GHTDA PF  R   + NW LS  RA  A + L++ G+
Sbjct: 181 FFEDLLLALAPLFERVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276


>gi|260779337|ref|ZP_05888229.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605501|gb|EEX31796.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 330

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+   +DD   + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QRQEQVVFKRTKTVDDDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
                     S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  Q---------SASVFDKSYGNPFDTSQSISPIDLAADSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +   +G               E +  +P          
Sbjct: 93  --------PSRHDSTHIVSSFFQGDGEGP--------------ETDSLIPG-------TF 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             ++RL  LAK I   +  + A      V    T  G+ I + D     MF +  S   P
Sbjct: 124 DTQERLAALAKVIKEAVRQISAQG---NVNVTVTPQGLRIVLQDDYKQHMFGRGGSELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V       + I GHTD++ F+     R NW LS  RA +A   L+  G+
Sbjct: 181 FFEDLLLALAPVFKRVENPLIISGHTDSTRFKGHVERRSNWELSASRANAARHTLVAGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++R+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDERVLQVTGMSDRALLNGDEPESSENRRIELFILT 276


>gi|254699266|ref|ZP_05161094.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
 gi|261749708|ref|ZP_05993417.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
 gi|261739461|gb|EEY27387.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513]
          Length = 345

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 52/362 (14%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   + II+++    D   ++ G WKI YADFMT +                       Y
Sbjct: 6   ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAM---------------------ASY 44

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    LM         +N  +R  + + +     E  TK   D  +   + +++ Q  
Sbjct: 45  FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 102

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182
                 L+          + +   + G     S           + F P     K     
Sbjct: 103 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 162

Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219
                              K+ +  ++L   +    +G  A N  K         V    
Sbjct: 163 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 222

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G++I + D+ +  MF   S+ P    + +L++I +V+A     + I GHTDA PF++
Sbjct: 223 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 282

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              DNWRLS  RA  AY +L++ G+ E R+ ++ G+A  + K  +DP  + NRRIDI ++
Sbjct: 283 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 342

Query: 340 DR 341
            +
Sbjct: 343 SK 344


>gi|254228819|ref|ZP_04922242.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262396462|ref|YP_003288315.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|151938766|gb|EDN57601.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262340056|gb|ACY53850.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 330

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHSHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                        S+H  N +     +G       D     N                  
Sbjct: 94  -------------SKHNSNHVVSSYFRGDGDGPEIDSLIPGN-----------------F 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I    + + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLAALAKVIERMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V       + I GHTDA PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFQRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ V  
Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFVLT 276


>gi|52842529|ref|YP_096328.1| flagellar motor protein MotB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629640|gb|AAU28381.1| chemotaxis (motility protein B) transmembrane [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 312

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 63/329 (19%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           I +K+  +D  ++ GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF    K  
Sbjct: 33  IIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVA 92

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +   + + + +   +    N  D                                   ++
Sbjct: 93  LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q S   K  +     K K++ +S   E                         K+L++L 
Sbjct: 118 GQVSATNKPLINESIAKDKEIVESQANEI------------------------KKLEELK 153

Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +I+ ++    +   + K +L +    G+ I +ID +  PMFD  S    PE   +L  I
Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++L      I+I+GHTDA+P+ N       NW LS  RA +A + L+K+G+ E+++  +
Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +G++   L    +P N  NRRI I+V  +
Sbjct: 274 TGYSSTILLDKKNPYNPENRRISIIVMKK 302


>gi|84502387|ref|ZP_01000523.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597]
 gi|84389199|gb|EAQ01996.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597]
          Length = 339

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 11/308 (3%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           WK+ YADFMT +MAFFL++WI+ A+D++  + +  YF P         +G+ D       
Sbjct: 26  WKVAYADFMTAMMAFFLLLWILAASDEEALRGLADYFTPSLSQAGGKGQGMLDGTIIAPN 85

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
             Q   +         +       +    +      + I      +       S+  + E
Sbjct: 86  GDQGGSNTPDGNTRLPSFGQENPLAVFDSRLRDEATDVIVEYETKEDGTMEPKSM-GEGE 144

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNI 211
             +D   +    +    EE Y        +    +R+  ++ L ++I   +   V  +++
Sbjct: 145 DEEDGSAAEQAAERQALEEQY--------QAEVKEREANMERLEEEIRRHIQERVDLEDL 196

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            + + F+ T  G+L+ I+D+    MF + S+     T  +++ IGE +      I I GH
Sbjct: 197 GENLRFDRTSEGLLVQIMDKEGRSMFARGSARVDSRTRDLIRIIGESIVDMQNAIVITGH 256

Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TDA PF  N+   NW LS DRA +  +VL+ +GVS  RI +ISG A      A DP  + 
Sbjct: 257 TDAVPFVNNLGYSNWELSADRANATRRVLIDTGVSPARIKRISGLASTDPLNADDPEAAE 316

Query: 331 NRRIDILV 338
           NRRI +L+
Sbjct: 317 NRRIGVLL 324


>gi|229588064|ref|YP_002870183.1| flagellar motor protein MotB [Pseudomonas fluorescens SBW25]
 gi|229359930|emb|CAY46784.1| chemotaxis MotB protein [Pseudomonas fluorescens SBW25]
          Length = 339

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 63/335 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+++    + K AI  YF
Sbjct: 2   ENNQPIIIKR-VKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + +  + D                             +G + Q    + +  
Sbjct: 61  KDPIGFSESGTPFVID-----------------------------LGGSPQLAPERTINP 91

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +   +  ++    ++++   +E+ +       L++   K E                  
Sbjct: 92  EVKTEAPQEKIPIERDTVEAMAEQVEQERLELLLQELQTKVE------------------ 133

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                                    + FE T  G+ I I D  N PMFD  S+   P   
Sbjct: 134 --------------ENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFE 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  + + +      ISI GHTDA P+       NW LS +RA +A + L+     + +
Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQ 239

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ GFA  +L    DP N  NRRIDI+V  ++ 
Sbjct: 240 VARVVGFASSQLFDHKDPFNPINRRIDIVVLTKKA 274


>gi|319944147|ref|ZP_08018425.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599]
 gi|319742641|gb|EFV95050.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 76/335 (22%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  Q I++K+        ++ G+WKI YADF+T +MAFFL+MW++++  ++T K I +YF
Sbjct: 7   KKAQPIVVKRIKKAAH-GHHGGAWKIAYADFVTAMMAFFLLMWLLSSASENTLKGISEYF 65

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +    G+ D   P                +T+    +  G T           
Sbjct: 66  QQPLKLSLIGGSGVGDATAP---------VPGGGTDLTRKDGQVNKGIT----------- 105

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                  KGKD  K   L+K   + E   +            + 
Sbjct: 106 -----------------------KGKDSKKDVKLQKLKERLEASIM------------QV 130

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPET 248
             L+ L  +I                  E T  G+ I I+D    P+F    S++  P  
Sbjct: 131 PALEALRDQI----------------RLEMTVDGLSIQIVDASKKPLFASGKSTVLSPNM 174

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVS 305
             +++ IG++L      +S+ GHTDA+P+         NW LS +RA S+ + L++ G+ 
Sbjct: 175 RELMRTIGKLLNEVENPVSLSGHTDATPYAGGSTGGYSNWELSTERANSSRRELVQGGMD 234

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++I ++ G         ++P +  NRRI I+V +
Sbjct: 235 PNKILRVQGLGAVVPLDKTNPNDPMNRRIAIVVLN 269


>gi|54298209|ref|YP_124578.1| flagellar motor protein MotB [Legionella pneumophila str. Paris]
 gi|53751994|emb|CAH13420.1| hypothetical protein lpp2267 [Legionella pneumophila str. Paris]
          Length = 312

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 63/329 (19%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           I +K+  +D  ++ GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF    K  
Sbjct: 33  IIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVA 92

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +   + + + +   +    N  D                                   ++
Sbjct: 93  LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q S   K  +     K K++ +S   E                         K+L++L 
Sbjct: 118 GQVSATNKPLINESIAKDKEIIESQANEI------------------------KKLEELK 153

Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +I+ ++    +   + K +L +    G+ I +ID +  PMFD  S    PE   +L  I
Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++L      I+I+GHTDA+P+ N       NW LS  RA +A + L+K+G+ E+++  +
Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +G++   L    +P N  NRRI I+V  +
Sbjct: 274 TGYSSTVLLDKKNPYNPENRRISIIVMKK 302


>gi|295699068|ref|YP_003606961.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295438281|gb|ADG17450.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 344

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 132/345 (38%), Gaps = 64/345 (18%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
            S   + +     I+ + +   +   ++ G+WKI YADF+T +MAFFL+MW++ +T    
Sbjct: 5   RSRAAQVEAPAPVIVRRSRKGDEHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKYD 64

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           K+                  GI D  N P  S                            
Sbjct: 65  KQ------------------GIEDYFNTPLSSLLGG------------------------ 82

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                                     +     G+D+  +     + ++ E    PP +  
Sbjct: 83  -----------------NEGTAAARPSVVQGGGRDISDTRPGVGTKSQTEPT--PPRAAM 123

Query: 182 KILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +     KRLQ L  K+S+ +    V +     +    T  G+ I I+D +N PMF   
Sbjct: 124 PAVTPMDAKRLQQLKAKLSALIEQSSVLNAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298
           SS   P  + +L +IG  L      ISI GHTDA P+        NW LS +RA +A + 
Sbjct: 184 SSKLQPYAVTILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARRA 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           L+  G+  D++ ++ G A      +       NRRI ILV ++  
Sbjct: 244 LVAGGMHGDKLLQMRGLADVLPLNSHVADEPTNRRISILVLNKAA 288


>gi|194364216|ref|YP_002026826.1| flagellar motor protein MotB [Stenotrophomonas maltophilia R551-3]
 gi|194347020|gb|ACF50143.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 59/333 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +I+++        ++ GSWK+ YADF+T +MAFFLV+W++ +T    + AI +YF
Sbjct: 3   ETKPTVIVRRVRKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +      P          S        + D+  GS+N    +Q  + 
Sbjct: 63  R--------NPSPLVGSSATPAPGMAGPGGASTSMIKLGGATDISRGSSNDP--FQNQKE 112

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +    + QQ                                               + K
Sbjct: 113 AVPQPVDQQQ-----------------------------------------------RDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L+ L K++   +S   A +     +L + T  G+ I I+D++N PMFD  S+   P T
Sbjct: 126 QQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++ E L H    IS+ GHTD + +       NW LS DRA +A + L+  G+ + 
Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALIDGGLEDS 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +I+++ G +   L   +DP N  NRRI I+V  
Sbjct: 246 KITRVVGLSSSVLFDKADPQNPINRRISIVVMT 278


>gi|310767897|gb|ADP12847.1| Chemotaxis protein [Erwinia sp. Ejp617]
          Length = 343

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2   KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F                           K+ L+  +  + +S  +  G  +  ++   + 
Sbjct: 62  FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGRDPTEKIGEVH 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                         K  DL+K  +K +   L  L +     ++ 
Sbjct: 99  ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L                   ++    + G+ I IID +N PMF   S+      
Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD  P+        NW LS DRA ++ + L+  G++ 
Sbjct: 173 RDILRAIAPILNQIPNRISLAGHTDDFPYPGGERGYSNWELSADRANASRRELVAGGLNS 232

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++ ++ G +           ++ NRRI +LV +
Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266


>gi|91223190|ref|ZP_01258456.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01]
 gi|269967120|ref|ZP_06181187.1| chemotaxis LafU protein [Vibrio alginolyticus 40B]
 gi|91192003|gb|EAS78266.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01]
 gi|269828257|gb|EEZ82524.1| chemotaxis LafU protein [Vibrio alginolyticus 40B]
          Length = 331

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 66/337 (19%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q+ +  +  + KV   D  ++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  +
Sbjct: 2   QKQEHVVFKRAKVYSHDESSHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 61

Query: 69  FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +         S  +FD+   NP + S S + IDL+ D  +                   
Sbjct: 62  LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------ 94

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                         S+H  N +     KG       D     N                 
Sbjct: 95  --------------SKHNSNHVVSSYFKGDGDGPEIDSLIPGN----------------- 123

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L  LAK I    + + A      V    T  G+ I + D     MF +  +   
Sbjct: 124 FDTQEQLAALAKVIEQMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 180

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    +L  +  V       + I GHTDA PF  R   + NW LS  RA  A   L++ G
Sbjct: 181 PFFEDLLLALAPVFHRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 240

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +DR+ +++G +   L    +P +S NRRI++ V  
Sbjct: 241 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFVLT 277


>gi|254525153|ref|ZP_05137208.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14]
 gi|219722744|gb|EED41269.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14]
          Length = 320

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 59/334 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +I+++        ++ GSWK+ YADF+T +MAFFLV+W++ +T    + AI +YF
Sbjct: 3   ETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +  +   P          S        + D+  G++N    +Q  + 
Sbjct: 63  R--------NPSPLSGKSATPAPGMAGPGGASTSMIKLGGATDVSRGNSNDP--FQNQKE 112

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +    + QQ                                               + K
Sbjct: 113 AVPQPLDQQQ-----------------------------------------------RDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L+ L K++   +S   A +     +L + T  G+ I I+D++N PMFD  S+   P T
Sbjct: 126 QQLEQLMKELQEAISKSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++ E L H    IS+ GHTD + +       NW LS DRA +A + L+  G+ + 
Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALIDGGLEDS 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +I+++ G +   L   +DP N  NRRI I+V  +
Sbjct: 246 KITRVVGLSSSVLFDKADPQNPINRRISIVVMTQ 279


>gi|119897740|ref|YP_932953.1| flagellar motor protein MotB [Azoarcus sp. BH72]
 gi|119670153|emb|CAL94066.1| flagellar motor protein MotB [Azoarcus sp. BH72]
          Length = 357

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 51/339 (15%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + ++ Q I++K+ +      ++ G+WKI YADF+T ++AFFL+MW++ +T     + I  
Sbjct: 2   SDDSQQPIVVKR-IKKGGGGHHGGAWKIAYADFVTAMIAFFLLMWLLGSTAQGDLEGIAD 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  M   +              + I     E +T++   +K G           
Sbjct: 61  YFQNPLKLAMDGGE---------GSGDSSSIIKGGGEDLTRSVGQVKRG----------- 100

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             ++                     KG+D  +                         + +
Sbjct: 101 --DVEGDRRINLDAAKGRQAPSADGKGRDEAE-------------------------SNR 133

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL DL  +I + +            +L +    G+ I ++D++N PMF+ +S+   P
Sbjct: 134 ERSRLIDLKGRIEAIVEANPDLRQFKNQILMDIVNEGLRIQLVDEQNRPMFNSASADLRP 193

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304
            T  +L+ IG  L      +S+ GHTD++ +    R   NW LS +RA ++ + L+  G+
Sbjct: 194 YTRDLLRAIGRALNDVGNSVSVSGHTDSAQYAGGERGFSNWELSSNRANASRRELVSGGL 253

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
              ++ ++ G A       ++PM++ NRRI I+V ++Q 
Sbjct: 254 LAGKVVRVVGLADTIPLNRANPMDAVNRRISIIVLNKQA 292


>gi|134094523|ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans]
 gi|133738426|emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas
           arsenicoxydans]
          Length = 327

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 146/337 (43%), Gaps = 63/337 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            E  + II+K+ +      ++ G+WKI YADF+T +MAFFL+MW++ +T     +     
Sbjct: 3   DEGLRPIIVKR-IKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQ----- 56

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI D  + P + +      S D           +   + +++     
Sbjct: 57  -------------GIADYFSTPLKVAMAGGSGSGDATSVIKGGGKDMTRIDGQQK----- 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                   KG++L  +  L     + E            L  + 
Sbjct: 99  ------------------------KGENLTPTKSLNLKDAEAE------------LERQE 122

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             RL+ L ++I   +  + +    K  +L + T  G+ I I+D++N PMF  S +   P 
Sbjct: 123 MNRLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQPY 182

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
           T ++L +I + L      IS+ GHTDA+P+ +      NW LS DRA ++ + L+  G+ 
Sbjct: 183 TKLILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGME 242

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E ++ ++ G +   L    DP+N  NRRI I+V +++
Sbjct: 243 EAKMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKK 279


>gi|153831776|ref|ZP_01984443.1| lateral flagellar motor protein B [Vibrio harveyi HY01]
 gi|148872286|gb|EDL71103.1| lateral flagellar motor protein B [Vibrio harveyi HY01]
          Length = 330

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                        S+H  N +     +G       D     N                  
Sbjct: 94  -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I   +  + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276


>gi|259908189|ref|YP_002648545.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96]
 gi|224963811|emb|CAX55313.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96]
 gi|283478118|emb|CAY74034.1| Chemotaxis protein MotB (Motility protein B) [Erwinia pyrifoliae
           DSM 12163]
          Length = 343

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2   KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F                           K+ L+  +  + +S  +  G  +  ++   + 
Sbjct: 62  FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGRDPTEKIGEVH 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                         K  DL+K  +K +   L  L +     ++ 
Sbjct: 99  ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L                   ++    + G+ I IID +N PMF   S+      
Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD  P+        NW LS DRA ++ + L+  G++ 
Sbjct: 173 RDILRAIAPILNQIPNRISLAGHTDDFPYPGGERGYSNWELSADRANASRRELVAGGLNS 232

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++ ++ G +           ++ NRRI +LV +
Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266


>gi|121611336|ref|YP_999143.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555976|gb|ABM60125.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 327

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 133/341 (39%), Gaps = 67/341 (19%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q II+++ V       ++G+WKI YADF+T +MAFFL++W++ +T     + I  Y
Sbjct: 10  EKKLQPIIVRR-VHRAAPAGHMGTWKIAYADFVTAMMAFFLLLWLLGSTAKGDLQEIAAY 68

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F       M  + G             + +  +  E +TK     +        Q +   
Sbjct: 69  FAAPLGASMVGTDGA---------GRSSSVIPAGGEDLTKALGQSRRSGAQASGQRRI-- 117

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                             L+    +++   +  L  +    M  
Sbjct: 118 ---------------------------------GLDAEYARQDRQRIEALRAKFDALMAS 144

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL +   +I                    T  G+ I IID++N PMFD  S+  LP  
Sbjct: 145 NPRLNEYRSQI----------------RIRITPDGLQIQIIDEQNRPMFDSGSARVLPHM 188

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR------NIARDNWRLSLDRAYSAYQVLMKS 302
             +L  IG  L      IS+ GHTDA P+            NW LS DRA ++ + L+ +
Sbjct: 189 RDILHAIGAALGGVKNRISLAGHTDAVPYGKYGPHDEPGYSNWELSADRANASRRELVSA 248

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G+ +D++ ++ G A        DP+  ANRRI I V   + 
Sbjct: 249 GMPDDQLGRVVGLAASDPLAPDDPLAPANRRISITVLTHEA 289


>gi|90577360|ref|ZP_01233171.1| chemotaxis LafU protein [Vibrio angustum S14]
 gi|90440446|gb|EAS65626.1| chemotaxis LafU protein [Vibrio angustum S14]
          Length = 332

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 126/333 (37%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N + I+ K+         + G+WK+ +ADFM  LMA FLV+W++   D   +KAI  Y 
Sbjct: 2   QNTEQIVFKRAAKRHSHQQHGGAWKVAFADFMIALMALFLVLWLMQVVDQKERKAIVAYV 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N         S  +FDE                             G+ N       L  
Sbjct: 62  N---------SASVFDE-----------------------------GAGNPFDTANSLSP 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
             F    +  S H      +    G      +D            +P        + + +
Sbjct: 84  IDFGGEAADLSSHNAAMTIKSFFDGNGDGPESD----------ALIPG-------SFETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LA  +  T   + A      +  + T  G+ I + D     MF + S+   P   
Sbjct: 127 EQLAILASVVEETAKQVSAQG---NISVDVTPQGLRIILQDDFKQNMFHRGSANLTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            VL  I  +    +  + I GHTDA+PF+     R NW LS  RA  A Q L+  G+  +
Sbjct: 184 DVLLSIAPIFKQISNSLIISGHTDATPFKRQFSNRSNWELSSSRANVARQTLIAGGMPSN 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++  A   L     P  S NRRI++ +  
Sbjct: 244 RVLQVAAMAERALLNKQSPNASENRRIELFILT 276


>gi|156976178|ref|YP_001447084.1| flagellar motor protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527772|gb|ABU72857.1| hypothetical protein VIBHAR_04949 [Vibrio harveyi ATCC BAA-1116]
          Length = 330

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                        S+H  N +     +G       D     N                  
Sbjct: 94  -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I   +  + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276


>gi|269960142|ref|ZP_06174518.1| chemotaxis LafU protein [Vibrio harveyi 1DA3]
 gi|269835113|gb|EEZ89196.1| chemotaxis LafU protein [Vibrio harveyi 1DA3]
          Length = 330

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A +    + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                        S+H  N +     +G       D     N                  
Sbjct: 94  -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I   +  + A      V    T  G+ I + D     MF +  +   P
Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V    +  + I GHTD++PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276


>gi|157147077|ref|YP_001454396.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895]
 gi|157084282|gb|ABV13960.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895]
          Length = 315

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 138/335 (41%), Gaps = 52/335 (15%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           +N+  +   IIK+         + G+WK+ +ADF   +MA F+V+WI+ A  ++ +K I 
Sbjct: 2   RNRSKEHTTIIKRSSRKSHDEFHGGAWKVAFADFTLAMMALFMVLWIMGAVTEEERKEIV 61

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              N                ++  E +S   I     +    + +D             R
Sbjct: 62  SMLN---------------GESVFEGNSLTPITQKEGQGGQLSLID------------SR 94

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                     ++ S+   ++  + +++ K      D+                       
Sbjct: 95  HPKTPKPSKTAESSKPLTDAEKQVAQQAKQTESLDDVNA--------------------- 133

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + +  ++DLA+ I    S   A   +K    E    G+ I + D +   MF +SS+I  P
Sbjct: 134 RSRNEIEDLARIIMKITSTYDAQANLK---MEIVPQGLRILVSDDQKREMFQRSSAILTP 190

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305
               +L +    L      I I GHTDA+ FR+ +  +NW LS +RA  A  VL   G+ 
Sbjct: 191 FFKRLLTEFAPELNKIDNKIIITGHTDATRFRDQVLYNNWNLSGERAMQARAVLTTGGLD 250

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +I ++SG A   L     P++SANRRI+I+V  
Sbjct: 251 QSKILQVSGMADQMLLDPQHPLSSANRRIEIMVLT 285


>gi|54307286|ref|YP_128306.1| chemotaxis LafU protein [Photobacterium profundum SS9]
 gi|46911706|emb|CAG18504.1| Hypothetical chemotaxis LafU protein [Photobacterium profundum SS9]
          Length = 330

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 47/334 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    II+KK+       ++ G+WK+ +ADF   +MAFF+V+W++  T  + +  IEQ  
Sbjct: 3   KEPHIIIVKKRARRHHDEHHGGAWKVAFADFAIAMMAFFMVLWLMGITTQEERIEIEQRL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   +    IF+  N P       ID   +    +N ++                 
Sbjct: 63  QT-----ASIFDNIFEITNSPH-----PIDFDGNASPFENPINSST-------------- 98

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                               +S++ +D   +    +  +K      P L+          
Sbjct: 99  --------------------NSKRKRDTSVAQQTPQGDDKASAGRGPKLNSMLAGKHLST 138

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L  LAK +      L A N    ++ E    G+ I I D  +  MF +      P   
Sbjct: 139 AQLTILAKGLKEMAEALSASN---NIVLEIVPQGLRILIQDDDDHFMFQRGGIEMTPFFE 195

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +  VL      + I GHTD+ PF      NW LS  RA  A QVL+ SG+    I
Sbjct: 196 DMLYNLAPVLGQIKNRMVISGHTDSIPFHRRDYSNWDLSGSRALKARQVLVDSGLPVANI 255

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +++  A         P +  NRRI+++V  +  
Sbjct: 256 LQVAAMAARMPVNKQYPKSGKNRRIEMMVLTKNA 289


>gi|54295159|ref|YP_127574.1| flagellar motor protein MotB [Legionella pneumophila str. Lens]
 gi|53754991|emb|CAH16479.1| hypothetical protein lpl2239 [Legionella pneumophila str. Lens]
          Length = 312

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 63/329 (19%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           I +K+  +D   + GSWKI +ADF+T +MAFFL+MW++ + +   K  I +YF    K  
Sbjct: 33  IIRKIKKNDHKYHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKRPMKVA 92

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +   + + + +   +    N  D                                   ++
Sbjct: 93  LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q S   K  +     K K++ +S   E                         K+L++L 
Sbjct: 118 GQVSATNKPLINESIAKDKEIIESQANEI------------------------KKLEELK 153

Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +I+ ++    +   + K +L +    G+ I +ID +  PMFD  S    PE   +L  I
Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++L      I+I+GHTDA+P+ N       NW LS  RA +A + L+K+G+ E+++  +
Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +G++   L    +P N  NRRI I+V  +
Sbjct: 274 TGYSSTVLLDKKNPYNPENRRISIIVMKK 302


>gi|160896052|ref|YP_001561634.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160361636|gb|ABX33249.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 345

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 62/338 (18%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q IIIK+       P+  G+WKI YADF+T +MAFFL+MW++ +T     +     
Sbjct: 3   EKKLQPIIIKRVKKTAHAPH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQ----- 56

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI    + P + +    D                G+ N         
Sbjct: 57  -------------GIAAYFSSPLKVAMAGGD----------------GAGNSSSVIPGGG 87

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N++  +    +     +S  R +           ++                        
Sbjct: 88  NDLAKVHGQVRRSEAADSSNRRTSVDAGRADQAQVDS----------------------- 124

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             R++ L  K+ + + S    +     +  + T  G+ I I+D++N PMFD  S++  P 
Sbjct: 125 -NRIKALKAKVDAMITSNARLNEFRSQIRTDVTPDGLQIQIVDEQNRPMFDSGSAMVKPY 183

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L+++G  LA +   IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+ 
Sbjct: 184 MRDILREVGAALAGAENRISLSGHTDAAPYGNADRGYSNWELSSDRANASRRELVAAGMP 243

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +++++I+G A   L +  DP    NRRI I V  ++ 
Sbjct: 244 LNQLARITGLASSDLLLPDDPRAPQNRRITITVLTQEA 281


>gi|238026965|ref|YP_002911196.1| OmpA/MotB [Burkholderia glumae BGR1]
 gi|237876159|gb|ACR28492.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 312

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 122/332 (36%), Gaps = 64/332 (19%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            II+++        ++ G+WKI YADF+T +MAFFL+MW++ +T    ++          
Sbjct: 18  TIIVRRVKRDAHEGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKYERQ---------- 67

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                   GI    N P  +                                        
Sbjct: 68  --------GIESYFNTPLSALLG------------------------------------- 82

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             ++  S   ++S+              +   +        +PP S         K++L 
Sbjct: 83  -GSADGSGTARSSVINGGGHDLSDTHGGNGNATQQAAPARSVPPDSANDARLALLKQQLT 141

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L  +                +   TTR G+ I I+D R+ PMF   SS        +L 
Sbjct: 142 ALVDE------NPKLKAFKNQIRLSTTREGLRIEIVDSRSRPMFATGSSRLEDYAYDILF 195

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG VL      +S+ GHTDA P+        NW LS +RA +A + L+   + ED++ +
Sbjct: 196 QIGGVLNQVDNRVSLAGHTDAVPYSGGIAGYSNWELSSERANAARRALVAGHLREDKLLQ 255

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + G A              NRRI ILV +++ 
Sbjct: 256 VRGLADVLPFDRGVADAEVNRRISILVLNKEA 287


>gi|292488570|ref|YP_003531454.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430]
 gi|292899741|ref|YP_003539110.1| chemotaxis protein [Erwinia amylovora ATCC 49946]
 gi|291199589|emb|CBJ46706.1| chemotaxis protein [Erwinia amylovora ATCC 49946]
 gi|291554001|emb|CBA21046.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora
           CFBP1430]
 gi|312172716|emb|CBX80972.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora
           ATCC BAA-2158]
          Length = 343

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N + I++ K+        + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2   KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F                           K+ L+  +  + +S  +  G  +  ++   + 
Sbjct: 62  FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGLDPTEKIGEVH 98

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                         K  DL+K  +K +   L  L +     ++ 
Sbjct: 99  ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L                   ++    + G+ I IID +N PMF   S+      
Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      +S+ GHTD  P+        NW LS +RA ++ + L+  G++ 
Sbjct: 173 RDILRAIAPILNQIPNRLSLAGHTDDFPYAGGERGYSNWELSANRANASRRELVAGGLNS 232

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++ ++ G +           ++ NRRI +LV +
Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266


>gi|186473029|ref|YP_001860371.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184195361|gb|ACC73325.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 327

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 136/346 (39%), Gaps = 65/346 (18%)

Query: 2   NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
              G++       +I+++ K       ++ G+WKI YADF+T +MAFFL+MW++ +T   
Sbjct: 5   RPRGEEASAKAAPVIVRRSKKGDGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            K+ IE YFN    +L+  ++G    +                                 
Sbjct: 65  DKQGIEDYFNTPLSSLLGGNEGTAAAR-----------------------------PNVI 95

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           +   + + +       + Q E  K +LT+ +    D                        
Sbjct: 96  QGGGRDISDTRPGDGKTMQQEPAKPTLTQITTVPNDTA---------------------- 133

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
                     RL+ L  K+S+ +    A       +    T  G+ I I+D    PMF  
Sbjct: 134 ----------RLEQLKSKLSALIEDTPALKAFKDQIRISITNEGLRIEIVDTLKRPMFAT 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQ 297
            SS      + +L +IG  L      ISI GHTDA  + N      NW LS +RA +A +
Sbjct: 184 GSSKLQSYAVEILTRIGAALNDVDNRISIAGHTDAVTYANGPAGYSNWELSSERANAARR 243

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L+  G+ ED++ ++ G A      A+      NRRI +LV ++  
Sbjct: 244 ALVAGGMREDKLLQVRGLADVLPLNANVADEPTNRRISVLVLNKAA 289


>gi|302877353|ref|YP_003845917.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302580142|gb|ADL54153.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 295

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 59/315 (18%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           G+WKI YADF+T LMAFFL++W+I++T  D ++AI +YF      + +        Q+  
Sbjct: 29  GAWKIAYADFVTALMAFFLMLWLISSTSADYRQAISEYFETPLMVVFSGG------QSND 82

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
             SS        D+  +   V+   G+             + ++                
Sbjct: 83  VTSSLIVGSYGEDKTFSSGQVNKGEGAVEDIAISVSDAGRLLHM---------------- 126

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                                        +E +     K +L+ L +      +    + 
Sbjct: 127 -----------------------------QEVVRLKLLKAQLEQLIR------TDPNLNQ 151

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             + +  + T  G+ I IID +N PMF+  S+I  P T+ +L+ IG  L      I + G
Sbjct: 152 FKEQLQIDLTSEGLRIMIIDAKNRPMFEIGSAILQPYTVEILRSIGSTLNRVPNKIGLSG 211

Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTDA+ ++  +    NW LS DRA ++ + L+  G+ +++I ++ G +   L   +DP +
Sbjct: 212 HTDAANYQGGSAGYSNWDLSADRANASRRTLIAGGMGQEKILRVVGLSDSVLFNPADPYD 271

Query: 329 SANRRIDILVEDRQG 343
           + NRRI I+V +++ 
Sbjct: 272 AHNRRISIIVMNQKA 286


>gi|78063638|ref|YP_373546.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77971523|gb|ABB12902.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 318

 Score =  225 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 66/342 (19%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
            S   K       +++++K   D   ++ G+WKI YADF+T +MAFFL+MW++ +     
Sbjct: 5   RSTPSKQSVAASLVVVRRKKGEDHDAHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSKYD 64

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           K+                  GI D  N P  +                            
Sbjct: 65  KQ------------------GIEDYFNTPLST---------------------------- 78

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                       LS  Q ++  + S+ +    G+D+   T    +    +   +P  S  
Sbjct: 79  -----------LLSGGQDAQAPRPSVVQGG--GRDMSDPTPAIDT----KAQPVPASSPA 121

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKS 240
            +  +   ++L+ L  K+++ ++   +       +    T  G+ I I+D    PMF   
Sbjct: 122 ALAGIVDTQKLERLKAKLTAAIAQSPSLRAYQDQIRIAITNEGLRIEIVDSLKRPMFASG 181

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298
           SS P      +L +IG  L      +SI GHTD++P+   +    NW LS DRA +A + 
Sbjct: 182 SSQPESYATAILSQIGTALDDVENRVSIAGHTDSTPYPDGSTGYSNWELSSDRANAARRA 241

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           L+  G+ ED++ ++ G A       +      NRRI ILV +
Sbjct: 242 LVAGGLREDKLLQVRGLADVLPLDKNVADEPTNRRISILVMN 283


>gi|330447921|ref|ZP_08311569.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492112|dbj|GAA06066.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 332

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 124/333 (37%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + I+ K+        ++ G+WK+ +ADFM  LMA FLV+W++   D   +KAI  Y 
Sbjct: 2   QKTEHIVFKRAAKRHSNEHHGGAWKVAFADFMIALMALFLVLWLMQVVDQQERKAIVAYV 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N         S  +FDE                             G+ N       L  
Sbjct: 62  N---------SASVFDE-----------------------------GAGNPFDTANSLSP 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
             F    +  S H      +    G       D            +P        + + +
Sbjct: 84  IDFGGEAADLSSHNAAMTIKSFFDGNGDGPERD----------ALIPG-------SFETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L  LA  +  T   + A      +  + T  G+ I + D     MF + S+   P   
Sbjct: 127 AQLAVLASVVEETAKQVSAQG---NISVDVTPQGLRIILQDDFKQNMFHRGSANLTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            VL  I  +    +  + I GHTDA+ F++      NW LS  RA  A Q L+  G+  +
Sbjct: 184 DVLLNIAPIFKQISNSLIISGHTDATQFKSKFSRSTNWELSSSRANVARQTLIAGGMPSN 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G A   L     P  S NRRI++ +  
Sbjct: 244 RVLQVAGMAERALLNKQSPDASENRRIELFILT 276


>gi|254463728|ref|ZP_05077139.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206684636|gb|EDZ45118.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 282

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 58/332 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   IIIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 8   QSNVAPIIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 67

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P       +  G                          N          +  Q Q   
Sbjct: 68  FSPSIPLSRVSGGG--------------------------NGAFQGDSMFTEDIQPQSGT 101

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                     Q       +    ++ +D  K   +E+ ++                    
Sbjct: 102 GATDINPMDAQKAQGDTGVESTEKREEDDSKFRAIEEQLSGRGG---------------- 145

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                            +V+  + + ++   T  G++I +    + P+F++  + P P  
Sbjct: 146 ---------------ESMVSVAMARHIVTRVTDEGLIIELFATEDMPLFEEDQAEPKPLF 190

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +++ I  V    T  ++I GH  + P        W LS  RA     +L   G+   R
Sbjct: 191 RDLVRMIARVSDGVTSNVAIGGHIRSHPVVLAKNPVWELSHARADITRTLLESGGLDAGR 250

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +++G A  +L +  +PM + N RI+I+   
Sbjct: 251 VHRVTGHADRKLAVG-NPMAARNDRIEIIFLR 281


>gi|283834436|ref|ZP_06354177.1| MbhA protein [Citrobacter youngae ATCC 29220]
 gi|291069983|gb|EFE08092.1| MbhA protein [Citrobacter youngae ATCC 29220]
          Length = 332

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 52/343 (15%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    ++     +  II++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKGPNRRDRGAKTTIIRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKA 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    +                Q+         ++    + I              
Sbjct: 61  DRENIVAALH---------------GQSIFNGGGMAPLNKLGKQPIAPG----------- 94

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
            ++     N +    N Q++                            +     L    K
Sbjct: 95  AQKKNVTRNKLDKTVNPQETARIT-----------------------EENAKKALDVNEK 131

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +L  K  + L +LA  I+         ++   +  E    G+ + I D +N  MF++ 
Sbjct: 132 TALLKQKSAQELGELATDINVIARKA---HMETNLEMEIVPQGLRVLIKDDQNRNMFERG 188

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S+  +P    +L ++  V       I I GHTDA  +++   +NW LS DRA SA +VL 
Sbjct: 189 SAKIMPFFKSLLVELAPVFDSLDNKIIITGHTDAMSYKSNIYNNWNLSGDRALSARRVLE 248

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +G+ +D++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 249 DAGMPQDKVMQVSAMADQMLLDAKNPESAGNRRIEIMVLTQSA 291


>gi|120597323|ref|YP_961897.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557416|gb|ABM23343.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
          Length = 305

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 62/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             ++ IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY 
Sbjct: 3   HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              G    T     F+        S + IDL  +  I    +                  
Sbjct: 63  R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSIAPTIIPSH--------------- 100

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                          +    +   EE   +P            +
Sbjct: 101 ------------------------------PSPRAGAEGIEEGALIPG-------QFDTQ 123

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LA++++  +    + ++ + +       GI I I D  N  MF + S+   P   
Sbjct: 124 EQLTVLARQLNRVVQ---SSSMAENITVTIVPQGIRILIHDNVNRFMFTRGSAQMQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++
Sbjct: 181 ELLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQV 240

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++G A     I SD   +ANRRI+ L+  
Sbjct: 241 IQVTGMADQVPYITSDTAAAANRRIEALILT 271


>gi|260767946|ref|ZP_05876880.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260615976|gb|EEX41161.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 330

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 129/333 (38%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+     D P++ G+WK+  ADFM  LMA FLV+W++   + + +KAI  + 
Sbjct: 2   QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +         S  +FD      RS  N  D S                       Q +  
Sbjct: 62  H---------SASVFD------RSYGNPFDTS-----------------------QSISP 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +S  S+H  N        G      +D     N                    +
Sbjct: 84  IDLASESSVPSKHDANHTVTSFYNGNGNGPESDAIIPGN-----------------FDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK I + +  + A      V    T  G+ I + D     MF +  +   P   
Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       + I GHTD++ F+     R NW LS +RA  A Q L+  G+ E 
Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKRRFSHRTNWELSANRANIARQTLVAGGMPEQ 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L    +P  S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFVLT 276


>gi|197105150|ref|YP_002130527.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1]
 gi|196478570|gb|ACG78098.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1]
          Length = 301

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 45/331 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            DQ I+IKK        ++ G+WK+ YADF+T +MAFFL+MW+IN T  + K+ I  YF 
Sbjct: 4   GDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPEQKQGIADYFA 63

Query: 71  PFGKNLMTASKG-IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P   +  ++  G I          S++     I E +  +S +   G      +   LE 
Sbjct: 64  PASVSQTSSGAGGILGGTALGTDGSKSAGASPIIEELAPDSRNPNDGKNRDASKSDSLE- 122

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                         +  L  ++ K E       ++    +++  
Sbjct: 123 ---------------------------AASTQALRDALQKREEAAFASAAQSLRQSLQDM 155

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L +L+K                 ++ + T  G+ I ++DQ    MF+  SS P     
Sbjct: 156 PELAELSK----------------NIIIDQTPEGLRIQLVDQEGRSMFNAGSSQPNDRAK 199

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++L+ + +V+      +SI GHT A+   + A  +W LS  RA ++ ++L  SGV  DR+
Sbjct: 200 LLLRAVSKVINQLPNRVSIYGHTSANANGSRAESDWPLSAARADASRRILQGSGVDPDRV 259

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++SG A        DP  + NRRI I++  
Sbjct: 260 YQVSGKAASEPLYPDDPTLAGNRRIAIVLLR 290


>gi|315179650|gb|ADT86564.1| lateral flagellar motor protein B [Vibrio furnissii NCTC 11218]
          Length = 330

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+     D P++ G+WK+  ADFM  LMA FLV+W++   + + +KAI  + 
Sbjct: 2   QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +         S  +FD      RS  N  D S                       Q +  
Sbjct: 62  H---------SASVFD------RSYGNPFDTS-----------------------QSISP 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +S  S+H  N        G      +D     N                    +
Sbjct: 84  IDLASESSVPSKHDANHTVTSFYNGNGNGPESDAIIPGN-----------------FDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK I + +  + A      V    T  G+ I + D     MF +  +   P   
Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       + I GHTD++ F  R   R NW LS +RA  A Q L+  G+ E 
Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKQRFSHRTNWELSANRANIARQTLVAGGMPEQ 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L    +P  S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFVLT 276


>gi|73539429|ref|YP_299796.1| flagellar motor protein MotB [Ralstonia eutropha JMP134]
 gi|72122766|gb|AAZ64952.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 325

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 68/339 (20%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +  ND   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T      
Sbjct: 2   SSANDMRPIIVRRAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTL----- 56

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                        +GI +    P      K+ +   E  ++    +  G  +  ++   +
Sbjct: 57  -------------EGIAEYFRMPL-----KVAVVGGERSSQTPSVIPGGGMDVMRKDGEV 98

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                   +++Q                                          +    +
Sbjct: 99  MRAHDNDPSAEQ------------------------------------------RRNEFQ 116

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +RL+ L  ++   +            +L + T  G+ I I+D +N PMF    +   P
Sbjct: 117 EAQRLRALKNRLEQIIENNPMLKQFRPQLLLDITSEGLRIQILDTQNRPMFRTGRAEVEP 176

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304
               +L++IG V+      +S+ GHTD++ + N      NW LS DRA ++ + L+  G+
Sbjct: 177 YMRAILREIGPVINDLPNKVSLSGHTDSANYSNGERTYSNWELSSDRANASRRELIAGGM 236

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            E ++ ++ G A       SD +   NRRI I+V +++ 
Sbjct: 237 QEGKVLRVLGLAATMPLDKSDLLAPVNRRISIVVLNQKA 275


>gi|146294532|ref|YP_001184956.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145566222|gb|ABP77157.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 305

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 124/331 (37%), Gaps = 62/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             ++ IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY 
Sbjct: 3   HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                                                               +       
Sbjct: 63  ----------------------------------------------------RGDMNPTG 70

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            I     SQ S                    +    +   EE   +P            +
Sbjct: 71  PINPFELSQSSSIIDLEGNMSIAPAIIPSHPSPRAGAEGIEEGALIPG-------QFDTQ 123

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LA++++  +    + ++ + +       GI I I D  N  MF + S+   P   
Sbjct: 124 EQLTVLARQLNRVVQ---SSSMAENITVTIVPQGIRILIHDNVNRFMFTRGSAQMQPYFE 180

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++
Sbjct: 181 ELLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQV 240

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++G A     I SD   +ANRRI+ L+  
Sbjct: 241 IQVTGMADQVPYITSDTAAAANRRIEALILT 271


>gi|163800113|ref|ZP_02194014.1| chemotaxis LafU protein [Vibrio sp. AND4]
 gi|159175556|gb|EDP60350.1| chemotaxis LafU protein [Vibrio sp. AND4]
          Length = 330

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 66/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A D   ++ G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHDHDESHGGAWKVAFADFMIALMALFLVLWVMQVVDKEDRKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++                             
Sbjct: 93  --------PSQHNSNHVVSSFFQGDGDGPEMDSLIPGN---------------------F 123

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +++L  LAK I   +  + A +    V    T  G+ I + D     MF++  +   P
Sbjct: 124 DTQEQLALLAKVIDKVVGQISAQD---NVNVTITPQGLRIVLQDDYMQHMFNRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +L  +  V       + I GHTD++PF  R   + NW LS  RA  A   L++ G+
Sbjct: 181 FFEDLLLALAPVFERINNPLIISGHTDSTPFKQRVGRKSNWALSASRADVARNTLVEGGM 240

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 241 PDDRVMQVTGMSDRALLNREEPDSSENRRIELFILT 276


>gi|264676590|ref|YP_003276496.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|262207102|gb|ACY31200.1| OmpA/MotB [Comamonas testosteroni CNB-2]
          Length = 355

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 62/334 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q IIIK+        ++ G+WKI YADF+T +MAFFL+MW++ +T     +         
Sbjct: 7   QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                    GI    N P      K+ +S       +S  +  G  +  K + ++  +  
Sbjct: 57  ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + +++S          +                                   +  +RL
Sbjct: 103 EDNANRRSSQAMGRADESA-----------------------------------RDAQRL 127

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             L  K+ S ++     +     +  E T  G++I I+D +N PMFD  S++  P    +
Sbjct: 128 HALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG  + ++   IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+  D++
Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPLDKL 247

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ G A   L +  +P  + NRRI I V  ++ 
Sbjct: 248 ARVVGMASSDLLLPEEPRAAQNRRITITVLTKEA 281


>gi|126738556|ref|ZP_01754261.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6]
 gi|126720355|gb|EBA17061.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6]
          Length = 278

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 59/334 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   IIIKKK       ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  Y
Sbjct: 4   QSNMAPIIIKKKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P       +  G    Q                        D       Q +      
Sbjct: 64  FSPSIPLSRVSGGGNGAFQG-----------------------DSMFTEDIQPQSGTGAT 100

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +     +   Q E   +     S+K ++  K   +E+ +                     
Sbjct: 101 DMNPMDAQQAQGETGVSD----SQKAEEDSKLRAIEEQLQGRGG---------------- 140

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                            +V+  + + ++   +  G++I + +     +F+  ++ P P  
Sbjct: 141 ---------------ESMVSIEMARHIITRISDEGLIIELFETETAKLFEDGTAEPTPLF 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +++ +  V A     +++ GH  + P        W +S  RA +A  +L   G+  +R
Sbjct: 186 RDLVRMVSRVSATVANEVAVSGHIQSQPVVIAQNPVWGVSHQRADAARTLLESGGMKANR 245

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           I +++G+A  +L  A +PM+  N R++I++   Q
Sbjct: 246 IQRVTGYADRKL-AAQNPMSPRNNRVEIILLREQ 278


>gi|163793054|ref|ZP_02187030.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159181700|gb|EDP66212.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 373

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 31/332 (9%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N   I+IKK        ++ G+WK+ YADF+T +MAFFL++W++NAT ++ K  I  YF
Sbjct: 2   DNHATIVIKKVKKGGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLNATTEEQKMGISNYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +P   +                               T++     +G T+          
Sbjct: 62  DPTAIS-----------------------------RSTRSGSGGLLGGTSITVPGALKTP 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +     ++ Q    +   T   +   D  ++ +      ++E   +     E+++  + +
Sbjct: 93  SSPPQISTPQVARPQAERTESLDPDSDDPENIESRLGSREDEEGTVNQEVVEQLMREREQ 152

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ +D    I   +       ++ + +  ++T  G+ I +IDQ    +F   S+    +T
Sbjct: 153 QQFEDAEAAIKEAIEKSPELSDVAESIKVDSTPEGLRIQLIDQERIALFPNGSASMYEQT 212

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L K+ EV+A     I I GHTD+  F       NW LS DRA ++ +V++ +G+ E 
Sbjct: 213 RKLLIKVAEVVAALPNKIEITGHTDSKQFHPGSTYTNWDLSSDRANASRRVMVANGIDEK 272

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           RI ++ G A     +  DP +  NRRI I+++
Sbjct: 273 RIDEVVGKADRDPLVVEDPSDPTNRRISIILK 304


>gi|84622281|ref|YP_449653.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366221|dbj|BAE67379.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 385

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +  +   P          S        + D+  G   QK +  R  +
Sbjct: 63  R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N    +   +S                                              K K
Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L +++   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L ++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VEILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|325923665|ref|ZP_08185290.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
 gi|325545864|gb|EGD17093.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
          Length = 404

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    ++I++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVVIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                +
Sbjct: 63  R-----------------NPSPLSGKSP-----------------------------APS 76

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                     +   K   T D  KG+        + + +  E+              K K
Sbjct: 77  PGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTTEDSR-----------AKDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+++ 
Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   ++P N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281


>gi|91794978|ref|YP_564629.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91716980|gb|ABE56906.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 330

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 44/331 (13%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             ++ IIIK+      + ++ G+WK+ +ADF   +MA F+V+WI+   D D +  I QY 
Sbjct: 3   HKNEPIIIKRGRRSKRSASHGGAWKVAFADFTLAMMALFMVLWIMQIADQDERSQIVQYL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              G+   + +   FD        S + ID      I                       
Sbjct: 63  R--GEMYASGAMNPFDV-----AQSSSIIDFEGSPAI----------------------Q 93

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S     E    ++  +   G++     +       E N  +P            +
Sbjct: 94  QAIITSAGSGPERAGPAMHNNIPAGEE-----EPNAGQGPEFNAMVPG-------QYDTQ 141

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L  LA++++  +      ++   +       GI I I D  +  MF + S+       
Sbjct: 142 AQLVMLARQLNHVVQQ---SSMADNIAVTLVPQGIRILIHDNIDRFMFTRGSAQMQVYFE 198

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +G VL   T  + I GHTD++P+      NW LS  RA  A +VL   GV  +++
Sbjct: 199 DLLLALGPVLGQVTNAMVISGHTDSTPYVGTEFTNWELSSKRALLARRVLEFGGVKRNQV 258

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++G A     I  +P  +ANRRI++L+  
Sbjct: 259 IQVTGMADQVAYIPQEPAAAANRRIEVLILT 289


>gi|262173363|ref|ZP_06041040.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
 gi|261890721|gb|EEY36708.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
          Length = 315

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+        +  G+WKI  ADFM  LMA FLV+W++   + D +KAI  + 
Sbjct: 2   QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N        +    FD  N     S + IDL+ D  +                       
Sbjct: 62  NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +   S H  +S  +    G +     D                        + +
Sbjct: 93  -----PSRHNSNHVVSSFFQGDGDGPESNSLIDGN---------------------FETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK +   +  + A      V    T  G+ I + D     MF +  S   P   
Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       I I GHTD+ PFR       NW LS  RA  A + L+  G+  +
Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAE 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L   + P +S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276


>gi|58038613|ref|YP_190577.1| chemotaxis MotB protein [Gluconobacter oxydans 621H]
 gi|58001027|gb|AAW59921.1| Chemotaxis MotB protein [Gluconobacter oxydans 621H]
          Length = 311

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 143/334 (42%), Gaps = 30/334 (8%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
            ++N +  + IIIK+   + +  ++ G+WKI YADF+T +MAFFLVMW+INAT +D +K 
Sbjct: 2   SNQNGKEARKIIIKR-FDVVEGGHHGGAWKIAYADFVTAMMAFFLVMWLINATTEDQRKG 60

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           I  +FNP              +  PP   +            TK  V LK G     K  
Sbjct: 61  IANFFNPMAV----------WKDMPPPVDNVLPAAPEPVSLETK-PVALKPGKDQYGKAP 109

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           Q    +      +  S H    +       +       +  S  K E       +++   
Sbjct: 110 QGAAGSQQGKDQTAPSVHTAQIV--VLHDSQIQPGEPPVTPSAQKAEQEARAEAAQKIQA 167

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            +     L D+  ++S                      G+ + I D  + PMF    S P
Sbjct: 168 LISNTPELADVRSQVS----------------VTVGDDGLHVQIADSDHQPMFAMGQSSP 211

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P  + +++ I   L      +SI G+TDA+P+R     NW LS  RA +   ++++SG 
Sbjct: 212 NPHAVQLIKAIVPYLEKLHGKLSIAGYTDAAPYRPGQLSNWSLSSARAVAVRDLVVQSGF 271

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + R+  +SG+A   L   + P+N  NRRI +++
Sbjct: 272 PDRRLKSVSGYADRNLFDPTQPLNPRNRRIVLVL 305


>gi|327398736|ref|YP_004339605.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411]
 gi|327181365|gb|AEA33546.1| OmpA/MotB domain protein [Hippea maritima DSM 10411]
          Length = 287

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 135/332 (40%), Gaps = 50/332 (15%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +EN +  I+KK            +W++ Y DFMT +MAFFLVMW+I AT+   +K +  Y
Sbjct: 3   EENQEGGIVKKCKKCKCEEGGGSAWEVAYGDFMTSMMAFFLVMWLIAATNVKQRKVLSTY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F   G   +T    +   +   +  S++   L++ + I +  +                 
Sbjct: 63  FTQPGATSLTEGSSMLPSKGVFDIGSRS---LTVSQRIPEMPLP---------------- 103

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                           +   + + KG+ L                 +   S   I   K+
Sbjct: 104 ----------------SVQPQKTLKGRGLIPK--------------VLRKSGGGIGQSKQ 133

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              L ++ KKI   ++           +  E T  G+ I I D+   PMF   S    P 
Sbjct: 134 TMNLYNIMKKIQQVIASKKELLQYRNQIKMEITEEGLRIVIFDKNKRPMFYPGSDKLEPW 193

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              VL  + + LA  +  I+I GHTDA+P+      NW LS  RA +A + +  +GVS  
Sbjct: 194 AKEVLDIVAKQLADISNKITIEGHTDANPYVIGGLSNWDLSTMRANAARREIQTNGVSVS 253

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           R   I G+   R    +DP +  NRRI ILV+
Sbjct: 254 RFDSIVGYGDTRPVPGTDPKDPINRRIVILVK 285


>gi|58580310|ref|YP_199326.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188578754|ref|YP_001915683.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424904|gb|AAW73941.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523206|gb|ACD61151.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 377

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +  +   P          S        + D+  G   QK +  R  +
Sbjct: 63  R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N    +   +S                                              K K
Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L +++   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L ++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|299531265|ref|ZP_07044675.1| OmpA/MotB [Comamonas testosteroni S44]
 gi|298720672|gb|EFI61619.1| OmpA/MotB [Comamonas testosteroni S44]
          Length = 355

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 62/334 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q IIIK+        ++ G+WKI YADF+T +MAFFL+MW++ +T     +         
Sbjct: 7   QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                    GI    N P      K+ +S       +S  +  G  +  K + ++  +  
Sbjct: 57  ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + +++S          +                                   +  +RL
Sbjct: 103 EDNANRRSSQAMGRADESA-----------------------------------RDAQRL 127

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             L  K+ S ++     +     +  E T  G++I I+D +N PMFD  S++  P    +
Sbjct: 128 HALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG  + ++   IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+  D++
Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPLDKL 247

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ G A   L +  +P  + NRRI I V  ++ 
Sbjct: 248 ARVVGMASSDLLLPEEPRAAQNRRITITVLTKEA 281


>gi|166713570|ref|ZP_02244777.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 385

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                        +  +   P          S        + D+  G   QK +  R  +
Sbjct: 63  R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N    +   +S                                              K K
Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L +++   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L ++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|330939854|gb|EGH43087.1| flagellar motor protein MotB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 333

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 136/321 (42%), Gaps = 64/321 (19%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              ++ G+WKI +ADF T +MAFFLV+W++++   +   A+  YF        + S  + 
Sbjct: 3   GGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYV- 61

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
                        IDL     ++ N                        L+   Q+    
Sbjct: 62  -------------IDLGGSPEMSPNQT----------------------LNPEVQTTPSP 86

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL- 203
           +++  ++E  +   ++ +                          ++RL+ L +++ + + 
Sbjct: 87  DTVPIEAENAETKAEAVE--------------------------QERLEMLLQELQNKVQ 120

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                      +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +    
Sbjct: 121 ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVP 180

Query: 264 EVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             +SI GHTDA+PF  +    NW LS +RA +A + L+     + +++++ G+A   L  
Sbjct: 181 NKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYD 240

Query: 323 ASDPMNSANRRIDILVEDRQG 343
             +P N  NRRIDI+V  ++ 
Sbjct: 241 HQNPTNPINRRIDIVVLTKKA 261


>gi|258624680|ref|ZP_05719615.1| chemotaxis LafU protein [Vibrio mimicus VM603]
 gi|258583072|gb|EEW07886.1| chemotaxis LafU protein [Vibrio mimicus VM603]
          Length = 315

 Score =  222 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+        +  G+WKI  ADFM  LMA FLV+W++   + D +KAI  + 
Sbjct: 2   QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N        +    FD  N     S + IDL+ D  +                       
Sbjct: 62  NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +   S H  +S  +    G +     D                        + +
Sbjct: 93  -----PSRHNSNHVVSSFFQGDGDGPESNSLIDGN---------------------FETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK +   +  + A      V    T  G+ I + D     MF +  S   P   
Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       I I GHTD+ PFR       NW LS  RA  A + L+  G+  +
Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKALVDGGMPAE 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L   + P +S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276


>gi|304412488|ref|ZP_07394094.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307307147|ref|ZP_07586885.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304349130|gb|EFM13542.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306910386|gb|EFN40817.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 306

 Score =  222 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 130/331 (39%), Gaps = 61/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             ++ IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY 
Sbjct: 3   HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              G    T     F+        S + IDL  +  IT   +         + +      
Sbjct: 63  R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSITPPIIPSSSMPRGGESEGLEEGT 115

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            I    ++Q                                                   
Sbjct: 116 LIPGQFDTQ--------------------------------------------------- 124

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L  LA++++  +      ++ + +       GI I I D  N  MF + S+   P   
Sbjct: 125 AQLTVLARELNRVVQN---SSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYFE 181

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++
Sbjct: 182 ELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQV 241

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++G A     IA+D   +ANRRI+ L+  
Sbjct: 242 IQVTGMADQIPYIATDTAAAANRRIEALILT 272


>gi|289665512|ref|ZP_06487093.1| flagellar motor protein MotB [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668313|ref|ZP_06489388.1| flagellar motor protein MotB [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 385

 Score =  222 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                +
Sbjct: 63  R-----------------NPSPLSGKSP-----------------------------APS 76

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                     +   K   T D  KG+        + + +  E+              K K
Sbjct: 77  PGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTTEDSRS-----------KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L    DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKIDPQNPINRRISIVVMTQDA 281


>gi|258622497|ref|ZP_05717519.1| chemotaxis LafU protein [Vibrio mimicus VM573]
 gi|258585197|gb|EEW09924.1| chemotaxis LafU protein [Vibrio mimicus VM573]
          Length = 315

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+        +  G+WKI  ADFM  LMA FLV+W++   + D +KAI  + 
Sbjct: 2   QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N        +    FD  N     S + IDL+ D  +                       
Sbjct: 62  NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +   S H  +S  +    G +     D                        + +
Sbjct: 93  -----PSRHNSNHVVSSFFQGDGDGPESDSLIDGN---------------------FETQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++L  LAK +   +  + A      V    T  G+ I + D     MF +  S   P   
Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       I I GHTD+ PFR       NW LS  RA  A + L+  G+  +
Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAE 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L   + P +S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276


>gi|296161288|ref|ZP_06844096.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295888446|gb|EFG68256.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 136/346 (39%), Gaps = 65/346 (18%)

Query: 2   NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           NS   + ++    +I+++ K   D   ++ G+WKI YADF+T +MAFFL+MW++ +T   
Sbjct: 5   NSRASQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            K+                  GI D  N P  S                           
Sbjct: 65  DKQ------------------GIEDYFNTPLSSLIG------------------------ 82

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                           ++ +   + S+ +   +     +  D +KS  +         + 
Sbjct: 83  ---------------GNEGTAAARPSVVQGGGRDISDTRPGDGKKSQTQPTPPATAAPTV 127

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
               A     RL+ L  K+++ +    A       +    T  G+ I I+D +N PMF  
Sbjct: 128 APSDA----ARLEQLKAKLTALIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFPS 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQ 297
            SS   P    +L +IG  L      ISI GHTDA P+        NW LS +RA +A +
Sbjct: 184 GSSKLQPYAETILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARR 243

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L+  G+  +++ ++ G A      ++      NRRI ILV ++  
Sbjct: 244 ALVAGGMHGEKLLQVRGLADVLPLNSNIADEPTNRRISILVLNKAA 289


>gi|163758026|ref|ZP_02165114.1| flagellar motor protein [Hoeflea phototrophica DFL-43]
 gi|162284315|gb|EDQ34598.1| flagellar motor protein [Hoeflea phototrophica DFL-43]
          Length = 411

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 180/402 (44%), Gaps = 70/402 (17%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +Q  ++ II+K++    D  ++ G WKI YADFMT +MAFFLVMW++NA++++TK AI  
Sbjct: 6   HQGKNEIIIVKRRGGGGDDGHHGGVWKIAYADFMTAMMAFFLVMWLVNASNEETKAAIAS 65

Query: 68  YFNPFG--------KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
           YFNP          K +    K    E   P+  ++     +       +  +   G   
Sbjct: 66  YFNPIKLMDDKPADKGIKQVGKSAEGEATAPKSKTEGDESTTGQAGEAGSQKNSTAGEKQ 125

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
              +    EN    L+   Q    + +++   + G                 + F P   
Sbjct: 126 DYSEADYFENPYSVLAEIAQETGTQTNVSDKGDGGAAQSGPATGASGGEAYRDPFDPDFW 185

Query: 180 KEKILAMK-------------------------RKKRLQ----------DLAKKI----- 199
            + +                              K+ LQ          DL+ ++     
Sbjct: 186 SKSVEKDSDTLEESQSMFEVETFANNRLPESPVDKEPLQDPTDADGPAGDLSAQMAGDGG 245

Query: 200 ------SSTLSGLVADNIVKGVLFETTR-------TGILIS---------IIDQRNTPMF 237
                    L  L   +++K  + +           G+++          I DQ +  MF
Sbjct: 246 TGALTPEQLLEQLAEADVLKEDIMKALGGALGKLAEGLVVEPAEGGLLVSITDQLDFGMF 305

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           +  S++P  + ++ ++KIGEVLA     I+IRGHTDA PF +   DNWRLSL RA+SAY 
Sbjct: 306 NVGSAVPGRDLVIAMEKIGEVLAERDGAIAIRGHTDARPFASDTDDNWRLSLARAHSAYY 365

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           +L++ G+SE+RIS++SGFA  RLK   +P++  NRRI+ILVE
Sbjct: 366 MLVRGGLSEERISQVSGFADRRLKDPDNPLSEVNRRIEILVE 407


>gi|221069302|ref|ZP_03545407.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220714325|gb|EED69693.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 353

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 62/334 (18%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           Q IIIK+        ++ G+WKI YADF+T +MAFFL+MW++ +T     +         
Sbjct: 7   QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                    GI    N P      K+ +S       +S  +  G  +  K + ++  +  
Sbjct: 57  ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + +++S          +                                   +  +RL
Sbjct: 103 EDNANRRSSQTMGRADESA-----------------------------------RDAQRL 127

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             L  K+ + ++     +     +  E T  G++I I+D +N PMFD  S++  P    +
Sbjct: 128 HALKAKVDTMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L++IG  + ++   IS+ GHTDA+P+ N      NW LS DRA ++ + L+ +G+  D++
Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVSAGMPLDKL 247

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ G +   L +  +P  + NRRI I V  ++ 
Sbjct: 248 ARVVGMSSSDLLLPEEPRAAQNRRITITVLTKEA 281


>gi|325915929|ref|ZP_08178225.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537896|gb|EGD09596.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 396

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 139/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                 
Sbjct: 63  R-----------------NPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 RRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+ + 
Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMEDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   ++P N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281


>gi|329298550|ref|ZP_08255886.1| OmpA/MotB domain-containing protein [Plautia stali symbiont]
          Length = 319

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 72/334 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   +++K++       ++ GSWKI YADFMT ++AFF+VMW+I+  +      I +Y
Sbjct: 3   HGNRPIVLVKRRKHKKHEGSH-GSWKIAYADFMTAMVAFFMVMWLISIANPQELVQIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T  +   D ++P      +                                
Sbjct: 62  FKTPLKVALTGGQRSSDSESPIPGGGDDP------------------------------- 90

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                 ++K  ++ K  D++    + ++  L  L ++    ++ 
Sbjct: 91  ----------------------TQKKGEVQKQVDMDAQKRQLDDIRLNRLREKLDQLIEA 128

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL+ L   +   +  +V + +   +             ID +N PMF   S+   P  
Sbjct: 129 DPRLKALRPHL---IINMVEEGLRIQI-------------IDSQNRPMFKTGSAEVEPYM 172

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  +L      IS+ GHTD   + +      NW LS DRA ++ + L+  G+  
Sbjct: 173 RDILRVIAPLLNDIPNKISLSGHTDDFQYASGDRGYSNWELSADRANASRRELVAGGLDG 232

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++ ++ G A           ++ NRRI +LV +
Sbjct: 233 GKMLRVVGMADTMKLKNRGANDAVNRRISLLVLN 266


>gi|188993235|ref|YP_001905245.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734995|emb|CAP53207.1| motB2 [Xanthomonas campestris pv. campestris]
          Length = 392

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                 
Sbjct: 63  R-----------------NPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+++ 
Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   ++P N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281


>gi|157959885|ref|YP_001499919.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157844885|gb|ABV85384.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 336

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 138/330 (41%), Gaps = 44/330 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             + IIIK+K        + G+WK+ +ADF   +MAFF+V+WII   D   +  I ++  
Sbjct: 4   RPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQ 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
             G      S   FD  + P     + +D      I +  +         +         
Sbjct: 64  --GDLFEAGSINPFDLSSSP-----SMLDFEGQMTIQEPVLPTSSSGAGTRG-------- 108

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                          +L     +G++  K          E N  LP          + + 
Sbjct: 109 --------------PALHNRIPEGENNAK-----AGKGPELNAMLPG-------KFETQA 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ LA++I   +  +   ++   V  +    G+ I + D  N  MF + SS   P    
Sbjct: 143 QLEVLAREIDRVIEDV---SMSANVKLQVVPQGVRILMHDNINKFMFTRGSSEMKPYFED 199

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +G VL+     +SI GHTD++PF      NW LS  RA  A +VL  +GV  +++ 
Sbjct: 200 LLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKRALLARRVLGYAGVKNNQVL 259

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++G A     I+ DP  +ANRRI++++  
Sbjct: 260 QVTGMADQAPYISHDPAAAANRRIEMIIMT 289


>gi|312884825|ref|ZP_07744517.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367477|gb|EFP95037.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 331

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 122/333 (36%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  + D    + G+WK+ +ADFM  LMA FLV+WI+   D + +KAI  + 
Sbjct: 2   QRQESVVFKRSKSEDHDVVHGGAWKVAFADFMIALMALFLVLWIMQVVDREERKAIMAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +                 +  E+S  N  D S                       Q +  
Sbjct: 62  H---------------SASVFEKSYGNPFDTS-----------------------QSISP 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +S  S H           G      TD     N                    +
Sbjct: 84  IDLASESSVPSRHDLTHTVNSFFDGDGDGPETDSLIPGN-----------------FDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +RL  LAK I        A      V    T  G+ + + D     MF +  S   P   
Sbjct: 127 ERLAALAKVIEEATKQNGAQG---NVNITVTPQGLRVVLQDDEKQTMFSRGGSKLTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  I  +       I I GHTD+  +++      NW LS  RA +A   L+++G+  +
Sbjct: 184 DLLVAIAPIFEKVANPIIISGHTDSIRYKSRFNIKSNWELSTSRANAARYTLVQAGMPSE 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L     P +S NRRI++ V  
Sbjct: 244 RVLQVTGMSDRALLNPQAPKSSENRRIELFVLT 276


>gi|21233083|ref|NP_639000.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770023|ref|YP_244785.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114936|gb|AAM42924.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575355|gb|AAY50765.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 393

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                 
Sbjct: 63  R-----------------NPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+++ 
Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   ++P N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281


>gi|126176136|ref|YP_001052285.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125999341|gb|ABN63416.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 306

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 129/331 (38%), Gaps = 61/331 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             ++ IIIK++        + G+WK+ +ADF   +MA F+V+WI+   D   +  I QY 
Sbjct: 3   HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              G    T     F+        S + IDL  +  I    +         + +      
Sbjct: 63  R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGT 115

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            I    ++Q                                                   
Sbjct: 116 LIPGQFDTQ--------------------------------------------------- 124

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L  LA++++  +      ++ + +       GI I I D  N  MF + S+   P   
Sbjct: 125 AQLTVLARELNRVVQN---SSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYFE 181

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +G +L + T  + I GHTD++P+      NW LS +RA  A +VL + GV  D++
Sbjct: 182 ELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQV 241

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++G A     IA+D   +ANRRI+ L+  
Sbjct: 242 IQVTGMADQIPYIATDTAAAANRRIEALILT 272


>gi|163856411|ref|YP_001630709.1| flagellar motor protein MotB [Bordetella petrii DSM 12804]
 gi|163260139|emb|CAP42440.1| flagellar motor component MotB [Bordetella petrii]
          Length = 312

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 66/334 (19%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  ++I++K      P++ GSWKI YADF+T +MAFFLVMW+I+    +  + + +YF 
Sbjct: 5   NNHRVVIRRK-RGGSRPHHGGSWKIAYADFITAMMAFFLVMWLISIVPKEELRGLAEYFR 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              +  +T       E +       + +             D      +   + Q    +
Sbjct: 64  MPLRVALTGGPNYSAETSAIPGGGSDPLR------------DEGEVRKSDGSRVQSQVQS 111

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                +    E  K  L    E+   L                                 
Sbjct: 112 DAERRDRHALERLKRRLDSMLEENPVLKNFRP---------------------------- 143

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                          L+ D   +G+  +          +D +  PMF   S+   P    
Sbjct: 144 --------------QLLIDMTTEGLRIQI---------VDNQKRPMFATGSAEVQPYMRD 180

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L+++G VL      ISI GHTDA+ +     A  NW LS DRA ++ Q L+  G++E +
Sbjct: 181 ILRELGPVLNELPNKISIAGHTDATQYARGERAYSNWELSADRANASRQELVAGGMAEGK 240

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + +I G +     +  DP  + NRRI ++V +R+
Sbjct: 241 LMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNRR 274


>gi|33592172|ref|NP_879816.1| flagellar motor protein MotB [Bordetella pertussis Tohama I]
 gi|33596124|ref|NP_883767.1| flagellar motor protein MotB [Bordetella parapertussis 12822]
 gi|33601523|ref|NP_889083.1| flagellar motor protein MotB [Bordetella bronchiseptica RB50]
 gi|33571817|emb|CAE41326.1| chemotaxis protein MotB [Bordetella pertussis Tohama I]
 gi|33573127|emb|CAE36772.1| chemotaxis protein MotB [Bordetella parapertussis]
 gi|33575959|emb|CAE33038.1| chemotaxis protein MotB [Bordetella bronchiseptica RB50]
 gi|332381588|gb|AEE66435.1| flagellar motor protein MotB [Bordetella pertussis CS]
          Length = 315

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 67/318 (21%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ GSWKI YADF+T +MAFFLVMW+I+    +                    KGI +
Sbjct: 19  GGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREEL------------------KGIAE 60

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
               P R +      S  E                       ++ +    + +++E  + 
Sbjct: 61  YFRMPLRVALTGGPSSSAETSAIPGG---------------GQDPLRSQGDVRRAEGNRV 105

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS- 204
                 +                                  + + RL+ L  ++ + +  
Sbjct: 106 EAQPMGD-------------------------------AERRDRHRLERLKVRLENLIEE 134

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             V  N    +L + T  G+ I I+D +N PMF   S+   P    +L+++G VL     
Sbjct: 135 SPVLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPN 194

Query: 265 VISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            ISI GHTDAS +     A  NW LS DRA ++ Q L+  G+ E ++ +I G A     +
Sbjct: 195 KISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLV 254

Query: 323 ASDPMNSANRRIDILVED 340
             DP  + NRRI ++V +
Sbjct: 255 KDDPFAAVNRRISLVVLN 272


>gi|114570105|ref|YP_756785.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114340567|gb|ABI65847.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 307

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 39/310 (12%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW+IN T  + K+ I  YF P   +   +  G       P 
Sbjct: 25  AWKVAYADFVTAMMAFFLLMWLINTTTPEQKRGIADYFAPASVSPSNSGSGAPLAGTSPG 84

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                   G ++Q+++       +      Q  E    ++   +
Sbjct: 85  DDGV-----------------QGSGDSSQRQRLAPTAPQLNDRDRQQTPEGSPEAVESVT 127

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E       ++ + ++  + +   L   S     AM+    L +L                
Sbjct: 128 E-----ITASAMAEAQQRRDAAELHSASMSLRQAMQEMPELAEL---------------- 166

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              VL + T  G+ I +IDQ   PMFD  ++ P    + +L+ +  +       +S+ GH
Sbjct: 167 SNHVLIDETPEGLRIQLIDQEGRPMFDPGATRPNERAVTLLRAVARIAERLPNRLSVAGH 226

Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD++P        NW LS DRA +A  VL ++G+S+DRI ++ G A        DP    
Sbjct: 227 TDSAPAAPGADYTNWELSADRANAARSVLQRAGISDDRIYEVRGKAGSEPLYPDDPYMPG 286

Query: 331 NRRIDILVED 340
           NRRI +++  
Sbjct: 287 NRRISVVLLR 296


>gi|187920655|ref|YP_001889687.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187719093|gb|ACD20316.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 329

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 134/346 (38%), Gaps = 65/346 (18%)

Query: 2   NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
            S   + ++    +I+++ +   D   ++ G+WKI YADF+T +MAFFL+MW++ +T   
Sbjct: 5   RSRASREEQAPAPVIVRRSRKGGDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKF 64

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            K+                  GI D  N P  S               N        +  
Sbjct: 65  DKQ------------------GIEDYFNTPLSSLLG-----------GNEGTTAARPSVV 95

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           +   + + +    +    QSE    ++T  S    D                        
Sbjct: 96  QGGGRDISDTRPAVGKKSQSEPTPPAVTTPSVAPSDAT---------------------- 133

Query: 181 EKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
                     RL+ L  K+++ +    +       +    T  G+ I I+D +N PMF  
Sbjct: 134 ----------RLEQLKAKLTALIEQSPILKAFKDQIRISITNEGLRIEIVDSQNRPMFPS 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQ 297
            SS   P  + +L +IG  L      +SI GHTDA P+        NW LS +RA +A +
Sbjct: 184 GSSKLQPYAVTILTQIGAALNDVDNRVSIAGHTDAVPYTAGPEGYSNWELSSERANAARR 243

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L+  G+  +++ ++ G A      +       NRRI ILV ++  
Sbjct: 244 SLVAGGMHGEKLLQVRGLADVLPLNSQVADEPTNRRISILVLNKAA 289


>gi|304311521|ref|YP_003811119.1| Chemotaxis protein MotB [gamma proteobacterium HdN1]
 gi|301797254|emb|CBL45474.1| Chemotaxis protein MotB [gamma proteobacterium HdN1]
          Length = 459

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 35/333 (10%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + ++ I+IK+ V       + G+WK+ +ADF+T +MA FLV+W+I +T    K AI  YF
Sbjct: 5   DANKPIVIKR-VKKYAAGAHGGAWKVAFADFVTAMMALFLVLWLIESTTQAEKLAISMYF 63

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +         S  + +      R +     +S     T+    +   +       Q   +
Sbjct: 64  SNPTGYTEGGSPFVVNLGG-GMRDTDTIERVSSPAPPTQEPDVMPDRNIQPLDNIQTNPS 122

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   QQ+E                                             +  
Sbjct: 123 QEKSDLEKQQAEKQMQEQQLQEMH-------------------------------EQRET 151

Query: 190 KRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +  ++L + +   +            ++ + T  G+LI ++D+   PMFD   +   P  
Sbjct: 152 QEFEELKRALEEKIEADPTIGAFRDQIIIKITEDGLLIEVVDKDKRPMFDLGKTSVKPYF 211

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L+ I + L  +   +SI GHTDA PF  +    NW LS DRA +A + L+K+G+ ++
Sbjct: 212 NSILKAIAKTLEGTHNPLSISGHTDAVPFTESENYTNWELSSDRANAARRALLKAGMKKE 271

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +I+++ G A   L     P    NRRI IL   
Sbjct: 272 QIARVVGLADSILFDEKHPDAPINRRISILAMR 304


>gi|83858208|ref|ZP_00951730.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853031|gb|EAP90883.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633]
          Length = 303

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 42/332 (12%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            +DQ I+IKK        ++ G+WK+ YADF+T +MAFFL+MW+IN T+ + ++ I  YF
Sbjct: 2   SSDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLMMWLINNTEPEQRQGIADYF 61

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            P   +  T  S G+    +  +  ++     SI E +                   R E
Sbjct: 62  APASVSRTTSGSGGVLGGTSFGDDGARGSGSSSIVERLAP-----------------RSE 104

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            ++     + Q+             G+    S  L  ++ + E        +    A++ 
Sbjct: 105 QDVSREQEADQASGAAG--------GQPEASSDALASAVARREAAQFASAEQSLRQALQD 156

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              L +L                 + VL E T  G+ I +IDQ   PMF+  +  P    
Sbjct: 157 MPELAEL----------------SRHVLIEETPEGLRIQLIDQEGRPMFEPGAIEPNSRA 200

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V+L+ I E++      I+I GHTDASP       NW LS  RA +A  ++ ++G+ + R
Sbjct: 201 RVLLRTISEIVLRLPNRITISGHTDASPAPVGGVSNWELSSARANAALNIMTEAGIPDHR 260

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I+++ G A        DP    NRR+ I +  
Sbjct: 261 IAEVRGKAGAEPLFPDDPYLPGNRRLSITLLR 292


>gi|330951464|gb|EGH51724.1| flagellar motor protein MotB [Pseudomonas syringae Cit 7]
          Length = 351

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 65/336 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           EN+Q IIIK+ V      ++ G WKI +ADF T +MAFFLV+W++++   +   A+  YF
Sbjct: 2   ENNQPIIIKR-VKRFGGGHHGGGWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   + S  +              IDL     ++ N        T           
Sbjct: 61  KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                                    +   L   + E       +
Sbjct: 100 -----------------------------------------DTVPLEAETAETKAEEVEQ 118

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L +++ + +            +LFE T+ G+ I I+D  N PMFD  S+   P  
Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  + + +      ISI GHTDA+PF  +    NW LS +RA +A + L+     + 
Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G+A   L    +P N  NRRIDI+V  ++ 
Sbjct: 239 QVARVVGYASSALYDHQNPTNPVNRRIDIVVLTKKA 274


>gi|149908742|ref|ZP_01897403.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36]
 gi|149808284|gb|EDM68223.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36]
          Length = 334

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 41/329 (12%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
            + IIIK+K          G+WK+ +ADFM  LMAFF+V+WI+  +D D +K   +  N 
Sbjct: 2   SESIIIKRKRRSRGKSKGGGAWKVAFADFMLALMAFFMVLWILAVSDADERKEFSE--NI 59

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
              +L  +    FD    P  +S                                   ++
Sbjct: 60  RNYSLFESESNPFDFSGNPLPTSIGA--------------------------------DL 87

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
             L +  Q +  K+S+++ + +  +  ++ D E      +   +  L K ++ +  +   
Sbjct: 88  SVLDSKHQPDLTKHSVSKKTARSLNQ-RTADDEGDSGYGDKPMMNSLLKGQLTSPDQLAL 146

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    + I+ ++         + +  E    G+ I + D     MF + S+   P    V
Sbjct: 147 LASKLEAITDSI------GAAENIDIEVVPQGLRILLHDNAKHKMFRRGSAQMTPFFQDV 200

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L+ +  V       + I GHTD S F N A  NW LS  RA  A Q+L   G+  +R+++
Sbjct: 201 LRSLAPVFIPIENKLMISGHTDRSKFHNAAFTNWELSSQRALQARQMLQIGGMPRERVAQ 260

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVED 340
           +   +      A++P +S NRRI++L+  
Sbjct: 261 VVAMSDTMPIDAANPKSSVNRRIELLLLT 289


>gi|283851000|ref|ZP_06368285.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283573646|gb|EFC21621.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 344

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 40/331 (12%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q++    II K+V       + GSWK+ YAD +T +MAFFL+MW++N    D K+ +  
Sbjct: 3   EQDHKAKNIIIKRVKKVAAGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQDKKEQLAS 62

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN F             +                            +G        Q  
Sbjct: 63  YFNDFSIFQNPGPSAQLLDSG-------------------------GLGPPGAVVGSQDE 97

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             ++    + +     K   T D + G+ L      E     +        +        
Sbjct: 98  RPDVAIDRDGKAPSGGKGQGTGDLDGGRQLDAKAAAEAQAAAKAEAAAEAQAVA------ 151

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                  L +++   L   V   +   V     +  + I I+D+ + P+FD      LP+
Sbjct: 152 -------LEQQVEKALQESV-PELAGQVSVTQEKDKVRIEIMDKSDRPLFDLGGVALLPD 203

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              +L  +  V+      ++I GHTDA  + +    NW LS  RA SA +++++ G+  D
Sbjct: 204 AQRILAAVTGVIRKDGIKVAIEGHTDAYRY-SGTYSNWDLSAGRALSARRLMLQQGLPPD 262

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +++ +SGFA  R  +   P+++ NRRI +L+
Sbjct: 263 QVAAVSGFADTRPYVPGKPLDARNRRISLLL 293


>gi|261341475|ref|ZP_05969333.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316]
 gi|288316271|gb|EFC55209.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316]
          Length = 306

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 132/331 (39%), Gaps = 62/331 (18%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            +   IIK+         + G+WK+ +ADF   +MA F+V+WI+ +  ++ +K I    N
Sbjct: 7   KEHTTIIKRSSRKSHDTFHGGAWKVAFADFTLAMMALFMVLWIMGSVTEEERKEIVSQLN 66

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                     + IFD Q     +  N +                        +    E  
Sbjct: 67  ---------GESIFDGQTLSPITQPNGV----------------------GGKIAVTEKR 95

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                   Q E    +    S    D                           +  + + 
Sbjct: 96  DRGDHKHPQKETPTPAAMAKSASLDD---------------------------VKSRSQN 128

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++DLA+ I    S   A + +K    E    G+ I I D +   MF +SS+I  P    
Sbjct: 129 EIEDLARIIMKITSAYDAQSNLK---IEIVPQGLRILITDDQKREMFQRSSAILTPFFKR 185

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L +    L      I I GHTDA+ FR+    +N+ LS +RA  A +VL  +G+ +D++
Sbjct: 186 LLTEFAPALNKIDNKIIITGHTDATRFRDQDLYNNYNLSGERAMQARKVLTHAGLDQDKV 245

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            ++SG A   L   ++P++S+NRRI+I+V  
Sbjct: 246 LQVSGMADQMLLDPANPLSSSNRRIEIMVLT 276


>gi|330501121|ref|YP_004377990.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328915407|gb|AEB56238.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 313

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 127/345 (36%), Gaps = 63/345 (18%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G    E    IIIK++        + G+WK+ +ADF   +MA F+V+WII     D
Sbjct: 1   MKPRGGDGHE----IIIKRRGKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQTQD 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
             +A     N     L+    GIFD  +                  T   +D        
Sbjct: 57  ASRANADMLN---NPLVDGGAGIFDGTS-----------------TTPLDLDGVPVQVAP 96

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           ++  +           +   E       R                               
Sbjct: 97  RRDPENRARTPQEDPGAALGEGLPGEPRRPH----------------------------- 127

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                     ++Q+LAK +      L A+     +  +    G+ I I D     MF++ 
Sbjct: 128 -----FAEPLQMQELAKLMKELALQLDAEA---NIEVQVVPQGLRILIKDDAQRFMFNRG 179

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQV 298
           SS   P    +L+++  +L      + I GHTD+ P+R      +NW LS DRA  A  V
Sbjct: 180 SSHLNPHFETLLRRLAGILGRVENHLIISGHTDSMPYRGVVGGYNNWNLSGDRALRARNV 239

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           L+++G+    + +++  A     + +DP N ANRRI++L+   Q 
Sbjct: 240 LVEAGLPTGNVLQVAAQADGMPLLPNDPENGANRRIELLLLTSQA 284


>gi|332531608|ref|ZP_08407505.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
 gi|332038971|gb|EGI75400.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
          Length = 318

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 67/338 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + +  Q IIIK+        +  G+WKI YADF+T +MAFFL+MW++ +T     K +  
Sbjct: 4   DAKKLQPIIIKRVKKGGHGVH-GGAWKIAYADFVTAMMAFFLLMWLLGSTSKGDLKGLAD 62

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF                           K+ +        +S  +  G  +      + 
Sbjct: 63  YFRAPL-----------------------KVSMVGGNGSGASSSIMPGGGADLTLTAGQH 99

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +       +++E  +    R                         L  LS +   A+ 
Sbjct: 100 PEDASAADKRRRAETARRDAQR-------------------------LAALSAKISAAIS 134

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              +L+  +++I                  E+T  G+ I I+D++  PMF   ++   P 
Sbjct: 135 NNAQLRRFSRQIQ----------------LESTPDGLKIQIVDEQGRPMFTTGNAAVQPY 178

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
              +L++IG  L      IS+ GHTD + + N      NW LS DRA +A + L+ +G+ 
Sbjct: 179 MRDILREIGAALNGVENKISLDGHTDVTQYGNQGRSYSNWELSADRANAARRELVAAGMP 238

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ED++ +++G A   L +  +P   ANRRI I+V  ++ 
Sbjct: 239 EDKLLRVTGLAASNLLVPDNPTAPANRRISIMVLTKEA 276


>gi|307824077|ref|ZP_07654304.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307734861|gb|EFO05711.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  217 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 60/334 (17%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           DQ  II KKV      ++ G+WK+ YADF+T +MAFFL+MW++  T +  +K        
Sbjct: 3   DQQPIIVKKVKKGGHAHHGGAWKLAYADFVTAMMAFFLLMWLLGTTSEPERK-------- 54

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                     GI +    P ++S  +  L + +  +                        
Sbjct: 55  ----------GIAEYFQDPFKASTEERGLDVGDRTSII---------------------- 82

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                         S     ++G+     T  E  I  EE        +++ L   ++K 
Sbjct: 83  ----------QAGGSDITSQDQGQVDKGKTAEEVEITPEEIEHKAEELEKEKLENLKQK- 131

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
              +  KI ST      +   + +  E T  G+ I I+D +N PM+  +S+   P+  ++
Sbjct: 132 ---IQYKIDSTPE---LNEFKEQIKLEITSEGLRILIVDAQNRPMYKLASAETEPQIKLI 185

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L+ +  V+      +S+ GHTDA PF        NW LS DRA +A   L ++G++E++I
Sbjct: 186 LRALAPVINELPNKVSLNGHTDARPFPPNQKKYTNWELSSDRANAARYELNQAGLAEEKI 245

Query: 310 SKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQ 342
            ++ G +      A+ +P++  NRRI I+V +++
Sbjct: 246 LRVIGLSSSVPYSATAEPLDPINRRISIIVMNKK 279


>gi|304413521|ref|ZP_07394994.1| flagellar motor component [Candidatus Regiella insecticola LSR1]
 gi|304284364|gb|EFL92757.1| flagellar motor component [Candidatus Regiella insecticola LSR1]
          Length = 326

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 58/335 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            +    IIK+         + G+WK+ +ADF   +MA F+V+WI+ A  ++ +  I  + 
Sbjct: 6   RSTHTTIIKRSAKKHHAGVHTGAWKVAFADFTLAMMALFMVLWIVGAVSEEERHEIMSHI 65

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           +                                   I  N   L I   N+    +  E 
Sbjct: 66  H--------------------------------GNTIFSNQSFLSIPLKNKNGADKNFEM 93

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                +     E  +                       N+ +  F  P    K +  K  
Sbjct: 94  LHTNKTRDSMKERARE----------------------NRLKEPFKEPDQIRKEVVDKSA 131

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             +QDL++ +   L    A N    +  E    G+ I I D +   MF  SS++  P   
Sbjct: 132 TEMQDLSRMV---LEISKAHNAQSNLNIEMVPQGLRILIQDDKKREMFPLSSALLTPFFT 188

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L ++  VL      + I GHTD + +R+    +NW LS +RA +A + L + G+ +  
Sbjct: 189 RLLAELAPVLNDLNNKVIITGHTDGARYRDQELYNNWNLSGERAMAARRALERGGLDDAH 248

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           I +I+  A   L    DP+ +ANRRI+I+V  +  
Sbjct: 249 ILQINAMADQMLLDEKDPLGAANRRIEIMVLTKAA 283


>gi|45442813|ref|NP_994352.1| hypothetical protein YP_3056 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809034|ref|YP_652950.1| hypothetical protein YPA_3043 [Yersinia pestis Antiqua]
 gi|150260228|ref|ZP_01916956.1| lateral flagellar proton motor protein B [Yersinia pestis
           CA88-4125]
 gi|162420691|ref|YP_001604823.1| hypothetical protein YpAngola_A0200 [Yersinia pestis Angola]
 gi|165924864|ref|ZP_02220696.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939072|ref|ZP_02227624.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008977|ref|ZP_02229875.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212177|ref|ZP_02238212.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398344|ref|ZP_02303868.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419079|ref|ZP_02310832.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167466315|ref|ZP_02331019.1| flagellar motor protein B [Yersinia pestis FV-1]
 gi|170022980|ref|YP_001719485.1| hypothetical protein YPK_0731 [Yersinia pseudotuberculosis YPIII]
 gi|218927933|ref|YP_002345808.1| hypothetical protein YPO0747 [Yersinia pestis CO92]
 gi|229837433|ref|ZP_04457596.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A]
 gi|229840644|ref|ZP_04460803.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842804|ref|ZP_04462956.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|294502809|ref|YP_003566871.1| flagellar motor protein [Yersinia pestis Z176003]
 gi|45437679|gb|AAS63229.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108780947|gb|ABG15005.1| putative chemotaxis membrane protein [Yersinia pestis Antiqua]
 gi|115346544|emb|CAL19421.1| putative chemotaxis membrane protein [Yersinia pestis CO92]
 gi|149289636|gb|EDM39713.1| lateral flagellar proton motor protein B [Yersinia pestis
           CA88-4125]
 gi|162353506|gb|ABX87454.1| flagellar motor protein B [Yersinia pestis Angola]
 gi|165913028|gb|EDR31653.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923064|gb|EDR40215.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992316|gb|EDR44617.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206923|gb|EDR51403.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963073|gb|EDR59094.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050848|gb|EDR62256.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|169749514|gb|ACA67032.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229690071|gb|EEO82128.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697010|gb|EEO87057.1| Flagellar motor rotation protein motB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705556|gb|EEO91566.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A]
 gi|262360841|gb|ACY57562.1| flagellar motor protein [Yersinia pestis D106004]
 gi|262364786|gb|ACY61343.1| flagellar motor protein [Yersinia pestis D182038]
 gi|294353268|gb|ADE63609.1| flagellar motor protein [Yersinia pestis Z176003]
          Length = 303

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 136/344 (39%), Gaps = 67/344 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M +H           IIK+         + G+WK+ +ADF   +MA F+V+WI+    ++
Sbjct: 1   MRNHA----SGGATTIIKRANRKKHHVRHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    N          K IF +Q+     S++K                       
Sbjct: 57  ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                                        +S  GK+  K T    +I   E     P   
Sbjct: 85  ----------------------SGGGKLSNSIDGKEQAKETKSNLAIEVPE-----PEQS 117

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            + +  K +  +++L++ I    S     N    +  E    G+ I I D +   MF +S
Sbjct: 118 LEEVVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDQQRDMFQRS 174

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L
Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +  G+ E R+ +I+  A   L   +DP+ + NRRI+I+V  +  
Sbjct: 235 VNGGLDEGRVLQINAMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278


>gi|303248925|ref|ZP_07335172.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489648|gb|EFL49584.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 355

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 130/330 (39%), Gaps = 46/330 (13%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  +  II K+V       + GSWK+ YAD +T +MAFFL+MW++N    + K+ +  Y
Sbjct: 3   EQGQKANIIIKRVKKVAGGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQEKKEQLASY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           FN F             +                            +G        Q   
Sbjct: 63  FNDFSLFQNPGPSSQLLDSG-------------------------GLGPPAVVVGSQDER 97

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            ++      ++        T D + GK L      E +   +                  
Sbjct: 98  PDVAIDRGGKEPSGGAGQDTGDLDGGKRLEAKRRAEAAAKADAAAKA------------- 144

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                 L  ++   L   V   +   V    +   + I I+D+ + P+FD      LP+ 
Sbjct: 145 ------LEGQLEQALQKDV-PELAGQVSVTQSNDKVRIEIMDKADRPLFDLGGVTLLPDA 197

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L  + +V+      ++I GHTDA  + +    NW LS  RA +A +++++ G+S D+
Sbjct: 198 KRILAAVTDVIKKEGVKVAIEGHTDAYRY-SGTYTNWDLSAGRALAARRMMIQQGLSPDQ 256

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++ ++G+A  R  +  +  +  NRRI +L+
Sbjct: 257 VAAVTGYADTRPYVPGNLYDPKNRRISLLL 286


>gi|260431755|ref|ZP_05785726.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415583|gb|EEX08842.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157]
          Length = 279

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 121/332 (36%), Gaps = 58/332 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   IIIKKK       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 4   QTNAAPIIIKKKRTSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                                  I  N V                +
Sbjct: 64  FSP---------------------------------TIPVNPVSGGGDGAFGGDNMFSEK 90

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +   S +      +    R S             +  +  E                 
Sbjct: 91  TMVMDGSGATNKNPTEAKRARGSTGVDAEGGGRGATEDFSTLEATL-------------- 136

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                     +      +V+   +K ++   T  G+++ + D  + P+F+  +  P    
Sbjct: 137 ----------LGRAGESMVSKKALKHIVTRVTDKGLVVELFDTDDEPLFEPGTDNPTQLM 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++  +       T  I++ GH  +SP        W LS  RA    Q+L   GV   R
Sbjct: 187 RALVLFVARSSDLVTNAIAVEGHVKSSPLVVAHNPAWELSTSRAQVIRQLLQDKGVRPSR 246

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++++G A  +L +  +PM + N RI+I+   
Sbjct: 247 LNRVTGHADRKLAV-ENPMAARNDRIEIIFLR 277


>gi|192359644|ref|YP_001981667.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107]
 gi|190685809|gb|ACE83487.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107]
          Length = 333

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 60/336 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +   Q +IIKK+       ++  SWK+  ADFMT +MAFFL+MW++  T ++ KKAI QY
Sbjct: 2   ERGAQPLIIKKRKGRGH-GHHGSSWKVALADFMTAMMAFFLLMWLLGGTTEEEKKAISQY 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F   G   +    G                                +G  NQ +  Q+  
Sbjct: 61  FQDPGSQYVIGEGGA------------------------------DLGLINQDRPIQQ-- 88

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 S ++Q      +    ++  +++ +                     ++ +    
Sbjct: 89  ------SQAEQDTMETANTQEFTQDDQEVTEDK------------------IKREMERIE 124

Query: 189 KKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            ++LQ+L +++ + ++ L  V   I   +L + T  G+ I I+D+   PMFD  S+    
Sbjct: 125 NEQLQELKEQLETEINQLDSVFQQIKDQILIDFTALGLRIQIVDKDQRPMFDVGSANLKT 184

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            +  VLQ +  +L      ISI GHTDA+P+  N    NW LS DRA +A + +++    
Sbjct: 185 YSKEVLQALAPILDKVPNKISITGHTDATPYGANATYTNWELSADRANAARRAMLEGSYP 244

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           E++++ + G       +   P+   NRRI I+V  +
Sbjct: 245 ENKVATVQGMGSVAPLLVDKPLEPINRRIAIIVLKK 280


>gi|255021445|ref|ZP_05293492.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969150|gb|EET26665.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 307

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 127/337 (37%), Gaps = 66/337 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E  Q I+IK+         + G+WKI YADF+T LMAFFL+MW++ +T   T +      
Sbjct: 5   EKSQPIVIKRIKKT--AGGHGGAWKIAYADFVTALMAFFLLMWLLGSTTKATLQ------ 56

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                       GI      PE+ S      S   +   N     I  T  + Q  + + 
Sbjct: 57  ------------GIAQWFKNPEQVSLMGGPGSGSSNSVLNGGGSNINKTVGEVQRGQKKQ 104

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           ++             +                                           +
Sbjct: 105 SMPTNEAPADRSQTVD-------------------------------------------Q 121

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + L++L  K+ + +         +  +L   T  G+ I ++D    PMF   S++  P  
Sbjct: 122 RNLRELKNKLMAQIKSNPELAAFRHQLLISITPEGLRIQVVDSSKRPMFANGSTVLEPYA 181

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
             +   I   L      ISI GHTDA  +        N+ LS  RA S  Q+L++SG++E
Sbjct: 182 RTIFSAIAPTLDELPNRISITGHTDALRYLNEGRGYSNFNLSAGRANSVRQILVQSGLAE 241

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++ ++ G     L +  DP +  NRR+ I+V  R  
Sbjct: 242 NKVLRVVGMGSAVLFVPKDPDSPLNRRVSIVVLSRAA 278


>gi|307726280|ref|YP_003909493.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307586805|gb|ADN60202.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 330

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 66/347 (19%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLG--SWKIVYADFMTVLMAFFLVMWIINATDD 59
            S G + QE     II ++    D        +WKI YADF+T +MAFFL+MW++ +T  
Sbjct: 5   RSRGSQEQEAPPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSK 64

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
             K+                  GI D  N P  S                          
Sbjct: 65  FDKQ------------------GIEDYFNTPLSSLLG----------------------- 83

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
                            SQ +   + ++     +     +  D +K+  +       P++
Sbjct: 84  ----------------GSQGTASARPNVIEGGGRDISDTRPGDGKKTQIEPAT----PVN 123

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFD 238
               +A     RLQ L +K+ S +    A       +    T  G+ I I+D +N PMF 
Sbjct: 124 VVPTVAPADAARLQQLKEKLVSLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFA 183

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAY 296
             S       + +L +IG  L      ISI GHTDA P+        NW LS +RA +A 
Sbjct: 184 SGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERANAAR 243

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + L+  G+  +++ ++ G A      ++      NRRI ILV ++  
Sbjct: 244 RALVAGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 290


>gi|153948417|ref|YP_001399654.1| hypothetical protein YpsIP31758_0662 [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959912|gb|ABS47373.1| flagellar motor protein B [Yersinia pseudotuberculosis IP 31758]
          Length = 303

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 135/344 (39%), Gaps = 67/344 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M +H           IIK+         + G+WK+ +ADF   +MA F+V+WI+    ++
Sbjct: 1   MRNHA----SGGATTIIKRANRKKHHARHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    N          K IF +Q+     S++K                       
Sbjct: 57  ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                                        +S  GK+  K T    +I   E     P   
Sbjct: 85  ----------------------SGGGKLSNSIDGKEQAKETKSNLAIEVPE-----PEQS 117

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            + +  K +  +++L++ I    S     N    +  E    G+ I I D     MF +S
Sbjct: 118 LEEVVDKSRNEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDLQRDMFQRS 174

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L
Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +  G+ + R+ +I+  A   L   +DP+ + NRRI+I+V  +  
Sbjct: 235 VSGGLDKGRVLQINAMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278


>gi|170692674|ref|ZP_02883836.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170142330|gb|EDT10496.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 328

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 135/345 (39%), Gaps = 64/345 (18%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
            S G +++     I+ + K   D   ++ G+WKI YADF+T +MAFFL+MW++ +T    
Sbjct: 5   RSRGSEDEAPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFD 64

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           K+                  GI D  N P  S                            
Sbjct: 65  KQ------------------GIEDYFNTPLSSLLG------------------------- 81

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                          S+ +   + S+ +   +     +  D +K+  +       P++  
Sbjct: 82  --------------GSEGTAAARPSVVQGGGRDISDTRPGDGKKTQIEAAT----PVNVV 123

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +A     RLQ L +K+ S +            +    T  G+ I I+D +N PMF   
Sbjct: 124 PTVAPADAARLQQLKEKLISLIEQSPTLKAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298
           S       + +L +IG  L      ISI GHTDA P+        NW LS +RA +A + 
Sbjct: 184 SPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERANAARRA 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           L+  G+  +++ ++ G A      ++      NRRI ILV ++  
Sbjct: 244 LVSGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 288


>gi|158327337|emb|CAM82843.1| flagellar motor protein MotB [Yersinia enterocolitica W22703]
          Length = 302

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 141/337 (41%), Gaps = 63/337 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N    Q  I+K+      +  + G+WK+ +ADF   +MA F+V+WI+    ++ ++ I  
Sbjct: 4   NARGGQTTIVKRAARKKHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVA 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
             N          K IF +Q+     S++K                              
Sbjct: 64  QLN---------GKTIFAQQSFISIPSKSK------------------------------ 84

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                 DS  G +  K T    ++   E     P    + L  +
Sbjct: 85  ---------------SGGGKFSDSVDGHEQAKETKSNLAVEVPE-----PEQSLEELVDR 124

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             + +++L + I+   S   A + +K    E    G+ I I D ++  MF +SS++  P 
Sbjct: 125 SGREMEELTRIITQITSAYDAQSNLK---MEVVPQGLRILIQDDKHRDMFQRSSAVLTPF 181

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L+K G+ +
Sbjct: 182 FSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLDD 241

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           DR+ +I+  A   L  +++P+ + NRRI+I+V  +  
Sbjct: 242 DRVLQINAMAEQMLLDSAEPLAAKNRRIEIMVLTKTA 278


>gi|186896751|ref|YP_001873863.1| hypothetical protein YPTS_3453 [Yersinia pseudotuberculosis PB1/+]
 gi|186699777|gb|ACC90406.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 67/344 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M +H           IIK+         + G+WK+ +ADF   +MA F+V+WI+    ++
Sbjct: 1   MRNHA----SGGATTIIKRANRKKHHVRHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    N          K IF +Q+     S++K                       
Sbjct: 57  ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                            + S     +      K     +  + EKS+ +           
Sbjct: 85  -------------SGGGKLSNSIDGNEQAKETKSNLAIEVPEPEKSLEE----------- 120

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
              +  K +  +++L++ I    S     N    +  E    G+ I I D +   MF +S
Sbjct: 121 ---VVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDQQRDMFQRS 174

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L
Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +  G+ E R+ +I+  A   L   +DP+ + NRRI+I+V  +  
Sbjct: 235 VNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278


>gi|238762341|ref|ZP_04623312.1| Lateral flagellar proton motor protein B [Yersinia kristensenii
           ATCC 33638]
 gi|238699326|gb|EEP92072.1| Lateral flagellar proton motor protein B [Yersinia kristensenii
           ATCC 33638]
          Length = 302

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 141/344 (40%), Gaps = 67/344 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M SH        Q  IIK+      +  + G+WK+ +ADF   +MA F+V+WI+    ++
Sbjct: 1   MRSHA----RGGQTTIIKRSARKRHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            ++ I    N          + IF +Q+     S++K                       
Sbjct: 57  ERQEIVAQLN---------GQTIFSQQSFISIPSKSK----------------------- 84

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                                        +S  GK+  K T    ++   +     P   
Sbjct: 85  ----------------------SGGGKFSNSIDGKEQAKETKSNLAVEVPD-----PEQS 117

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            + +  K +K +++L++ I    S   A      +  E    G+ I I D +   MF +S
Sbjct: 118 LEDVVDKSRKEMEELSRIIMQITSAYDAQ---SNLQMEVVPQGLRILIQDDKQRDMFQRS 174

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++ L
Sbjct: 175 SAVLTPFFGRLLAELAPAFNEMDNKIIITGHTDASRYRDQVMYNNWNLSGERALMAHKAL 234

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +K G++E R+ +I+  A   L   ++P+ + NRRI+I+V  +  
Sbjct: 235 VKGGLTEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMVLTKTA 278


>gi|146305234|ref|YP_001185699.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145573435|gb|ABP82967.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 313

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 123/345 (35%), Gaps = 63/345 (18%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G +  E    II+K++        + G+WK+ +ADF   +MA F+V+WII   +  
Sbjct: 1   MRKRGGEEHE----IIVKRRSKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQNQQ 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
             +A           L+    GIFD  +                      V +       
Sbjct: 57  QSRADADQLT---NPLVEGGAGIFDGSSRTPLDLDG------------VPVQVSPRKDRD 101

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
            +     E+    L   Q  E  +       +  +       L   ++ E          
Sbjct: 102 NQARTPQEDPGATLGEGQPGEPRRPHYAEPGQMQELAELLEQLALQLDAEA--------- 152

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                                             +  +    G+ I I D     MF + 
Sbjct: 153 ---------------------------------NIEVQVVPQGLRILIKDDAQRFMFSRG 179

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQV 298
           S+   P    +LQ++  +LA     + I GHTD++P+R      +NW LS DRA  A  V
Sbjct: 180 SARLDPHFEKLLQRLAGILAKVDNHLIISGHTDSTPYRGVVGGYNNWNLSGDRALRARNV 239

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           L+++G+    + +++  A     + SDP N ANRRI++L+   Q 
Sbjct: 240 LVEAGLPTSAVLQVTAQADGMPLLPSDPQNGANRRIELLLLTSQA 284


>gi|21244419|ref|NP_644001.1| flagellar motor protein MotB [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110081|gb|AAM38537.1| chemotaxis MotB protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 380

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                             NP   S ++                                 
Sbjct: 63  R-----------------NPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|114705809|ref|ZP_01438712.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
 gi|114538655|gb|EAU41776.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
          Length = 407

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 158/395 (40%), Gaps = 60/395 (15%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
            +    + Q II+ ++       ++ G WKI +ADFMT +MAFFLVMW+ N+TD+ T+  
Sbjct: 12  SEAGHRDHQEIIVVRRRGGGHDEHHGGVWKIAFADFMTAMMAFFLVMWLTNSTDEATRTQ 71

Query: 65  IEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNK-------------------------- 97
           + QYFNP    +   ASKG+ + Q   E   +N+                          
Sbjct: 72  VAQYFNPIQLTDSTPASKGLKERQAQSEVEDENQGLVEEEIVGKSGGQPLAGDETGGEEQ 131

Query: 98  --------IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
                   +   I  +          G  +          + +      QS     ++  
Sbjct: 132 ALFRDPYAVLAEIAANSVSTGSGDNEGEPDGTGLTGLNGGDAYRDPFDPQSWQLSPNMRE 191

Query: 150 DSEKGKDLCKSTD-----LEKSINKEENYFLPPLSKEKILAMKRK--------------- 189
              +  DL  +         +     E       + E  +A K                 
Sbjct: 192 SGGELDDLPPAEFKTAVLPPEGTEASETESSAEETGETTVAAKAATGAETDLETEAETAE 251

Query: 190 ----KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                R  DL   I + L+ +  + +   V       G++IS+ D  ++ MF   S+ P 
Sbjct: 252 AAATSRTADLKSDIEAELADM-GEGVPSQVEVSEGEGGLMISLADDFDSGMFSVGSAKPN 310

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              + +++KI  VL      I IRGHTDA PF +   DNWRLS  RA+ AY +L + G+ 
Sbjct: 311 GAAVQMMEKIANVLKTRNGRIIIRGHTDARPFTSENYDNWRLSTARAHMAYYMLTRGGLG 370

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +R+  I GFA  + K A +P    NRRI+IL+ +
Sbjct: 371 AERVESIEGFADRQPKDAENPEADINRRIEILLVE 405


>gi|241761142|ref|ZP_04759231.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374761|gb|EER64222.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 326

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1   MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +K I  YFNP                                      S+  +  + + 
Sbjct: 61  ERKGIADYFNP--------------------------------------SLTPESAAGSD 82

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                   ++I    +         +  +   K  D+                       
Sbjct: 83  GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           ++I+    ++R + L + +   +    +   + + V    TR G+ I ++DQ +  MF  
Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298
            +   +P    ++ ++  V+     +I +RGHTDA P+ +    +NW LS  RA +  + 
Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           L+  GV  +R  +I G A     +  + M+  NRR+ I +
Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283


>gi|87121902|ref|ZP_01077787.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86162700|gb|EAQ63980.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 304

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 62/326 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II++   +    ++ G+WKI  ADF   +MAFFLVMWIIN        AI+ YFN     
Sbjct: 8   IIRRVKKVKKGGHHGGAWKIALADFALAMMAFFLVMWIINVASPQELAAIQGYFNDPKGM 67

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                                                + +G +  K   ++L+ N+    
Sbjct: 68  STAGYSN----------------------------NPIDLGGSPAKSTERKLDINLPDPG 99

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           + Q+ +  K       ++  +                                 +   DL
Sbjct: 100 SVQRPDSVKEDANSHRDQVAE---------------------------------QEQADL 126

Query: 196 AKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           A  +     G  V + + + +  E T  GI ++++D++N PMF + S   +P+  + +  
Sbjct: 127 AAALGKKFEGEKVFEAVKENLQIEITPDGIRVTLLDKQNKPMFAQGSGRLMPDFELAMVN 186

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           IG+VL+     + + GHTD+S +      NW LS  RA  A ++L + G  + R  ++ G
Sbjct: 187 IGQVLSGLNNKLVVSGHTDSSAYSFAGLGNWELSAMRANEARRLLREGGAGDTRFVQVMG 246

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            +       +DP    NRR+ +L+  
Sbjct: 247 LSDTAPYDRTDPAAGINRRVSVLLLT 272


>gi|254512283|ref|ZP_05124350.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11]
 gi|221535994|gb|EEE38982.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11]
          Length = 279

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 58/332 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   IIIKKK       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 4   QTNVAPIIIKKKRVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTETQRKGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                                  I  N V      +         +
Sbjct: 64  FSP---------------------------------TIPLNPV------SGGGDGAFGGD 84

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N     +         N    +++K +               E++               
Sbjct: 85  NMFSENTMVMDGSGASNRNPTEAKKARGSTGVDAQGGGKGAFEDFSSLE----------- 133

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                  A+ +  T   LV+D ++K ++   T  G+++ +    + P+F+  S  P    
Sbjct: 134 -------AQLLGRTGESLVSDEMLKHIVTRVTDEGLVVELFSTEDQPLFESGSDKPTQMM 186

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   +       T  I++ GH  ++P        W LS  RA    Q+L   GV   R
Sbjct: 187 RALTLLVARSSDLVTNSIAVEGHVRSAPVVLAHNPTWDLSTTRAQITRQLLQNKGVQPQR 246

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +++G A     +  +PM   N R++I+   
Sbjct: 247 LVRVAGHADREHAL-ENPMAVRNDRVEIIFLR 277


>gi|294624638|ref|ZP_06703310.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601073|gb|EFF45138.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 383

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                            +NP   S ++                                 
Sbjct: 63  -----------------RNPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|297538877|ref|YP_003674646.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297258224|gb|ADI30069.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 311

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 145/337 (43%), Gaps = 59/337 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +E  + II+K K+      ++ G+WKI YADF+T +MAFFL+MW++ +T  + K      
Sbjct: 3   EERVRPIIVK-KIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKEQK------ 55

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI D  N P   +                                  
Sbjct: 56  ------------AGISDYFNTPLMVALTG------------------------------- 72

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 S++          T+ S + K +  +   + SI+ EE       + E+   +K 
Sbjct: 73  GTAVGASDTLIKGGGGKDFTKKSGQVKKIDGADGKKTSIDAEEAKK----ALEQAEKVKL 128

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++  + + K I               +L + T  G+ + I+D++N  MF+ S +   P  
Sbjct: 129 EELKKKIEKAID---DSPTLSKFKNQLLLDITSDGLRVQIVDEQNRAMFNSSKAEMQPYA 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +LQ++G+ L      IS+ GHTDA+P+ N      NW LS DRA ++ + L+  G+ E
Sbjct: 186 KQILQELGKTLNDVPNKISLSGHTDATPYPNGEKSYSNWELSSDRANASRRELVAGGMDE 245

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            ++ ++ G +   L    +P ++ NRRI I++ ++Q 
Sbjct: 246 TKLLRVVGLSSASLFNKENPFDATNRRISIIIMNKQA 282


>gi|260752895|ref|YP_003225788.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552258|gb|ACV75204.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 326

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1   MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +K I  YFNP                                      S+  +  + + 
Sbjct: 61  ERKGIADYFNP--------------------------------------SLTPESAAGSD 82

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                   ++I    +         +  +   K  D+                       
Sbjct: 83  GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           ++I+    ++R + L + +   +    +   + + V    TR G+ I ++DQ +  MF  
Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298
            +   +P    ++ ++  V+     +I +RGHTDA P+ +    +NW LS  RA +  + 
Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           L+  GV  +R  +I G A     +  + M+  NRR+ I +
Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283


>gi|56551498|ref|YP_162337.1| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543072|gb|AAV89226.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 326

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M    +KN+   + II+KK +      ++ G+WK+ YADF+T +MAFFL++W++ AT++ 
Sbjct: 1   MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +K I  YFNP                                      S+  +  + + 
Sbjct: 61  ERKGIADYFNP--------------------------------------SLTPESSAGSD 82

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                   ++I    +         +  +   K  D+                       
Sbjct: 83  GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           ++I+    ++R + L + +   +    +   + + V    TR G+ I ++DQ +  MF  
Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298
            +   +P    ++ ++  V+     +I +RGHTDA P+ +    +NW LS  RA +  + 
Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           L+  GV  +R  +I G A     +  + M+  NRR+ I +
Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283


>gi|330821029|ref|YP_004349891.1| OmpA/MotB [Burkholderia gladioli BSR3]
 gi|327373024|gb|AEA64379.1| OmpA/MotB [Burkholderia gladioli BSR3]
          Length = 307

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 121/331 (36%), Gaps = 69/331 (20%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++++        ++ G+WKI YADF+T +MAFFL+MW+                   G  
Sbjct: 20  VVRRVRKNAHEGHHGGAWKIAYADFVTAMMAFFLLMWL------------------LGST 61

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
                KGI D  N P                                        +  L 
Sbjct: 62  SKYDRKGIEDYFNTP----------------------------------------LSTLL 81

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +    +     +     G+DL    D         N           +  +   RL  L
Sbjct: 82  GTHADSNGTARSSVLQAGGQDLSDRRDG--------NGHAASAPAAPAVDAEDAARLSRL 133

Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            +++S+ +            +   TTR G+ I I+D R+ PMF   S+        +L +
Sbjct: 134 RQQLSTLVEENPQLRAFKDQIRLSTTREGLRIEIVDSRSRPMFATGSARLEDYASDILFR 193

Query: 255 IGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           IG +L      +SI GHTDA P+        NW LS DRA +A + L+   + ED++ +I
Sbjct: 194 IGTLLNQVDNRVSIAGHTDAVPYSGGIAGYSNWELSSDRANAARRALVAGHLREDKLLQI 253

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            G A              NRRI ILV ++Q 
Sbjct: 254 RGLADVLPLDQGAADAEVNRRISILVLNKQA 284


>gi|187478167|ref|YP_786191.1| flagellar motor protein MotB [Bordetella avium 197N]
 gi|115422753|emb|CAJ49281.1| chemotaxis protein [Bordetella avium 197N]
          Length = 324

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 125/334 (37%), Gaps = 68/334 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  +++++K       ++ GSWKI YADF+T +MAFFLVMW+++    +  K I  YF 
Sbjct: 5   NNHRVVVRRK-RSSAKAHHGGSWKIAYADFITAMMAFFLVMWLVSIVPREELKGIADYFR 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              +  +T       E +       + +                 G   +    +     
Sbjct: 64  MPLRVALTGGPNSSAETSAIPGGGSDPLRSK--------------GEVRRADGNRVEAQP 109

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                +  + E  K  L    +    L                                 
Sbjct: 110 DADRRDRHRLESLKRRLEAVIDNSPVLKNFRP---------------------------- 141

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                          L+ D   +G+  +             +N PMF   S+   P    
Sbjct: 142 --------------QLLIDLTTEGLRIQIVD---------SQNRPMFATGSAQVQPYMRD 178

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L+++G VL      +SI GHTDA+ +  R  A  NW LS DRA ++ Q L+  G++E +
Sbjct: 179 ILRELGPVLNDLPNKVSISGHTDATQYARRERAYSNWELSTDRANASRQELVAGGMTEGK 238

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + +I G A     +  DP  + NRRI ++V + +
Sbjct: 239 VMRIQGLASSMSIVKDDPYAAVNRRISLVVLNEK 272


>gi|226941125|ref|YP_002796199.1| flagellar motor protein MotB [Laribacter hongkongensis HLHK9]
 gi|226716052|gb|ACO75190.1| MotB [Laribacter hongkongensis HLHK9]
          Length = 293

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 74/336 (22%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            E+ + II+K+ +      ++ G+WKI YADF+T +MAFFL+MW++++    T   I +Y
Sbjct: 3   DESQRPIIVKR-IKKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVSQGTLAGISEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  ++   G  D  +  +            + +T+++  +K    N+++Q +R  
Sbjct: 62  FKTPLKVALSGGDGSGDATSAIK---------GGGQDLTRSAGQVKRTYMNEERQRERQ- 111

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                                         L  L +   +A++ 
Sbjct: 112 ---------------------------------------------VLSKLQQRISMAIES 126

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              L+    ++   ++        +G+  +             +N PMFD  S+  LP T
Sbjct: 127 NPVLRKYKNQLLLEMTP-------EGLKVQIVDE---------KNRPMFDSGSANLLPHT 170

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L ++G++       +S+ GHTDA+P+        NW LS DRA +A + L+  G+ +
Sbjct: 171 KDILHELGKMFNDVPNRLSVSGHTDATPYAGGERGYSNWDLSADRANAARRELLAGGMQD 230

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            +I ++ G          + +N  NRRI I+V ++Q
Sbjct: 231 QKILRVVGLGSANPLDKQNAVNPINRRIAIVVLNKQ 266


>gi|294667303|ref|ZP_06732523.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602975|gb|EFF46406.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 387

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                            +NP   S ++                                 
Sbjct: 63  -----------------RNPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KRL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 KRLEALMQDLREAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|238795043|ref|ZP_04638637.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC
           29909]
 gi|238725644|gb|EEQ17204.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC
           29909]
          Length = 388

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 73/328 (22%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++K+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +YF    K  
Sbjct: 2   VRKRKAKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQQLTQIAEYFRTPLKVA 61

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +T+        +P      +                                        
Sbjct: 62  LTSGDKSSSSSSPIPGGGDDP--------------------------------------- 82

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                         +++  ++ K  D E+S  ++E Y L  L ++    ++   RL+ L 
Sbjct: 83  --------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIESDPRLRALR 126

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
             +   L  ++ + +              I IID +N PMF   S+   P    +L+ I 
Sbjct: 127 PHL---LINMMEEGL-------------RIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA 170

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +L      IS+ GHTD  P+ N      NW LS DRA ++ + L+  G+ E ++ ++ G
Sbjct: 171 PILNDIPNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELLVGGLDEGKVLRVVG 230

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342
            A           +  NRRI ILV ++Q
Sbjct: 231 MASTMRLKEQPGDDPVNRRISILVLNKQ 258


>gi|78049371|ref|YP_365546.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926421|ref|ZP_08187746.1| flagellar motor protein [Xanthomonas perforans 91-118]
 gi|78037801|emb|CAJ25546.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543210|gb|EGD14648.1| flagellar motor protein [Xanthomonas perforans 91-118]
          Length = 385

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 141/336 (41%), Gaps = 59/336 (17%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    +II++   +    ++ G+WK+ +ADF+T +MAFFLV+W++ AT  + + AI +YF
Sbjct: 3   EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                            +NP   S ++                                 
Sbjct: 63  -----------------RNPSPLSGKSP-------------------------------- 73

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                S         ++         D+ K    E    ++        S+      K K
Sbjct: 74  ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125

Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +RL+ L + +   +    A +     +L + T  G+ I I+D++N PMFD       P T
Sbjct: 126 RRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L+++   +      ISI GHTD + + +     NW LS DRA +A + L+  G+S+ 
Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++++ G +   L   +DP N  NRRI I+V  +  
Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281


>gi|13446371|gb|AAK20927.1| LafU [Aeromonas hydrophila]
          Length = 315

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 135/334 (40%), Gaps = 48/334 (14%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            N + IIIK++   +  P   G+ K+ +ADF   +MAFF+V+WI+  +  + ++ + +  
Sbjct: 2   RNHEQIIIKRQQRRNSAPKGGGACKVAFADFTLAMMAFFMVLWILAVSSQEEREVVARRL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
             +  ++M +    FD +N P           +DE   K                     
Sbjct: 62  RDY--SIMDSEANPFDIRNSPYPVDLGGNLSVLDELSPK--------------------- 98

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                 E+G+ + K  +  +SI    +          +  ++ +
Sbjct: 99  --------------------FVEEGQRMPKHMERNRSIFS--DGASGGYENLLVGKIEGE 136

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +++ LA  ++      +       +     R G+ I I D     M+ + S+   P   
Sbjct: 137 AQMKQLAGSLARW---PIRCKSRTTLSCNWYRKGLRILIRDDDEREMYSRGSARISPFFR 193

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  +  +       + I GHTD++PF      NW LS DRA  A +VL+  G+  +R+
Sbjct: 194 HMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLLAGGMPPERV 253

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +++  +   L+  +DP  S NRRI++LV   Q 
Sbjct: 254 GQVAAMSDTMLENTADPRGSQNRRIELLVMTSQA 287


>gi|262273510|ref|ZP_06051324.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
 gi|262222488|gb|EEY73799.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
          Length = 340

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 44/335 (13%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +    IIIKKK   D   ++ G+WK+ +ADF   +MAFF+V+WI+  T  + ++ I+  
Sbjct: 3   HDKQHVIIIKKKKHGDHDDHHGGAWKVAFADFAIAMMAFFMVLWIMEITSKEEREEIQ-- 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           +      +  +   +FD +N P       ID   +    +N ++  +  T++        
Sbjct: 61  YRLQQSTIFESIDNLFDIRNSP-----FPIDFGGEASPFENPINSTLSGTSE-------- 107

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                           NSL     +G+    +   E +++  E  +L             
Sbjct: 108 --------------LGNSLHEQVPQGEKGNNAGQGENAMSVMEGQYL------------N 141

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             +L  LA  +   ++ L A   ++ +  +    G+ I I D +   MF + S+   P  
Sbjct: 142 AAQLSGLAIALKEIVASLDA---MENIHLDVVPQGLRIQIQDSKRNVMFQRGSAQMTPFF 198

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L  +   L      + I GHTD++ F   A  NW LS DRA  A QV++ SG+ + +
Sbjct: 199 EDILYALSPKLGKIQNRLIISGHTDSTVFSTQAYSNWELSGDRALKARQVMVGSGLPQQQ 258

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + ++   A   L   +DP +  NRRI+I+V  ++ 
Sbjct: 259 VLQVVAMADRTLLDEADPQSGKNRRIEIMVLTKEA 293


>gi|170748396|ref|YP_001754656.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654918|gb|ACB23973.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 286

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 55/326 (16%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KKV      ++ G+WKI YADF+T +MAFFL+MW+I+ T  + K  + +YF+P   +
Sbjct: 4   IIIKKVKKAGHAHHGGAWKIAYADFVTAMMAFFLLMWLISMTTQEQKIGLAEYFSPAALS 63

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
             T+  G        + +       S      + S + ++ +           +    ++
Sbjct: 64  PATSGAGGILYGTALDTAGNKP---STPRDAERGSAEREVTARPTSPGLTSELDASRPVA 120

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N Q +     SL +  +   D+ +                                    
Sbjct: 121 NVQANWSAIASLRQALQTMPDIAE------------------------------------ 144

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                          + K ++ E T+ G+ +S++DQ    MF + S  P   T  VL+ +
Sbjct: 145 ---------------LSKNIVIEPTKEGVNVSLVDQDGRSMFREGSVEPYERTRRVLEAL 189

Query: 256 GEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              L      +SI G+T  A P    A + W LS  RA +  ++L  +GV  D  S +SG
Sbjct: 190 APALRRMPNRLSITGYTAVARPGSARAGEPWSLSAGRALAVREILSGAGVPNDNFSAVSG 249

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
                     +P  + NRR+ I + +
Sbjct: 250 RGDTEPVFPDNPYLAPNRRVTITLLN 275


>gi|315499937|ref|YP_004088740.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48]
 gi|315417949|gb|ADU14589.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
          Length = 300

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 44/309 (14%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW+IN T  + KK +  YF P   +  T+  G         
Sbjct: 25  AWKVAYADFVTAMMAFFLLMWLINTTSPEQKKGVADYFAPASVSQTTSGSGGILAGTAIG 84

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
           R                           Q+     +E+      + Q  +    +    S
Sbjct: 85  RDGVK-----------------------QEGSMAFIEHMAPEAPDVQDRDGTAKNAADLS 121

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +  ++     +L + + K E       ++    A++    L +L+K              
Sbjct: 122 QTPEE-----ELREELQKREEASFRSAAESLRQALQDMPELAELSK-------------- 162

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              +L + T  G+ I +IDQ    MF+ +S+ P     ++L+ + +V+      ISI GH
Sbjct: 163 --NILVDQTPEGLRIQLIDQEGRAMFNANSTQPNERARLLLRAVAKVVNQLPNRISITGH 220

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           T  +P    +  +W+LS DRA ++ QVL  +GV +DR++++SG A        DP  + N
Sbjct: 221 TTGTPGMGQSDKDWKLSADRADASRQVLQGAGVDQDRVAQVSGKAAKEPLYPDDPTLAGN 280

Query: 332 RRIDILVED 340
           RRI I++  
Sbjct: 281 RRIAIILLR 289


>gi|308050006|ref|YP_003913572.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632196|gb|ADN76498.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 328

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 44/333 (13%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             + ++++ +          G+WK+ +ADF   +MA FLV+W++   D   + +I Q   
Sbjct: 3   GHEVVVVRSRSLGGKRAKAGGAWKVAFADFTLAMMALFLVLWLVQVADKQERASIVQALT 62

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
             G+ L+ +S G   + N P         L +D  ++     +    T  ++    + N 
Sbjct: 63  --GETLLESSSGGSWDSNRPHI-------LELDGTLSMTEAVMPATGTGVQRAGPAMVNQ 113

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           I        +                                     L+      ++ + 
Sbjct: 114 IPKGERGASAGQGDT--------------------------------LTSLLPGPVETQA 141

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ LA++    ++      I   V  +    G+ I I D     MF + SS   P    
Sbjct: 142 QLEVLAREAGKIIAQ---SEIADNVAIQVVPQGLKILIRDNLQQFMFARGSSRMTPYFED 198

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L  +  +L      + + GHTD++ FR+    NW LS +RA  A + L   GV  ++  
Sbjct: 199 LLFSLAPLLKQVQNPLMVSGHTDSTHFRSNDSSNWELSSERALEARRALEFGGVGRNQFF 258

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            + G A       SDP +SANRRI+++V   + 
Sbjct: 259 NVVGMADQVPVEPSDPRSSANRRIELMVLTHKA 291


>gi|317403796|gb|EFV84276.1| chemotaxis protein MotB [Achromobacter xylosoxidans C54]
          Length = 329

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 68/334 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  ++I++K  +    ++ GSWKI YADF+T +MAFFLVMW+I+    +          
Sbjct: 5   NNHRVVIRRK-KVHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREEL-------- 55

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                     KGI +    P R +      S  E                          
Sbjct: 56  ----------KGIAEYFRMPLRVALTGGPSSSAET------------------------- 80

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                            +     G+D  ++   E+          P    E+    + + 
Sbjct: 81  -----------------SAVPGGGRDPLRNDGDERRAQGNRVEAQPKGDAER----RDQH 119

Query: 191 RLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL++L K++ + +    V  +    +L + T  G+ I IID +N PMF    +   P   
Sbjct: 120 RLENLKKRLENVIENSPVLKSFRPQLLIDMTTEGLRIQIIDNQNRPMFATGRAEVQPYMR 179

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L+++G VL      +SI GHTDAS +     A  NW LS DRA ++ Q L+  G++E 
Sbjct: 180 DILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNES 239

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           ++ +I G +     +  DP  + NRRI ++V ++
Sbjct: 240 KVMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNQ 273


>gi|332187888|ref|ZP_08389621.1| ompA family protein [Sphingomonas sp. S17]
 gi|332012049|gb|EGI54121.1| ompA family protein [Sphingomonas sp. S17]
          Length = 297

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 52/344 (15%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M        E  + +I+KK +A     ++ G+WK+ YADF+T +MAFFL++W++ AT + 
Sbjct: 1   MARAPHGKNEPPKIVIVKKIIADGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEK 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +K I  YF P   +  +   G              K   +         V+ + G    
Sbjct: 61  QRKGIADYFAPTLLDTKSVGVGGGVLNGGAGVGRMQKDSSTAIVQTLVTRVNGQGGDKPG 120

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                 L N      + +  +  K                                   +
Sbjct: 121 TGNKGSLRNPDALARDQKTFDAVK-----------------------------------R 145

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E +  M+    L+ LA++                V F  T +G+ I ++D  +  MF   
Sbjct: 146 ELLRKMEVTPELKKLAQQ----------------VRFIPTDSGLRIDLVDNADYSMFSMG 189

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299
           ++   P    ++  I + +A     I IRGHTD+ P+ +  A +NW LS  RA +  + L
Sbjct: 190 TTSLEPAASQLIGTIAKTVADVPNTIMIRGHTDSVPYGDPRAMNNWMLSSGRAEATRRRL 249

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
              G+ E R  +I G A     I  +P +  NRR+ I +  R+G
Sbjct: 250 AAGGLPESRFERIEGVADREPMITGNPSDPRNRRVAITLLYRKG 293


>gi|293607844|ref|ZP_06690158.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553]
 gi|292813756|gb|EFF72923.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553]
          Length = 340

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 68/333 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  ++I++K  +    ++ GSWKI YADF+T +MAFFLVMW+I+    +  K       
Sbjct: 16  NNHRVVIRRK-KVKGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELK------- 67

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                      GI +    P R +      S  E             T+      R    
Sbjct: 68  -----------GIAEYFRMPLRVAITGGPSSSAE-------------TSAVPGGGRDPLR 103

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                   Q    ++    D+E+                                 + + 
Sbjct: 104 SEGDVRRGQGNRVESQPMGDAER---------------------------------REQH 130

Query: 191 RLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL++L K++ + +    V  +    +L + T  G+ I IID +N PMF    +   P   
Sbjct: 131 RLENLKKRLENVIETSPVLKSFRPQMLIDLTTEGLRIQIIDNQNRPMFATGRAEVQPYMR 190

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L+++G VL      +SI GHTDAS +     A  NW LS DRA ++ Q L+  G++E 
Sbjct: 191 DILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNES 250

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++ +I G +     +  DP  + NRRI ++V +
Sbjct: 251 KVMRIQGLSSSMSLVKDDPYAAVNRRISLVVLN 283


>gi|326386939|ref|ZP_08208553.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208619|gb|EGD59422.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 277

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 62/326 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           II KK+ +    ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +K I  YF P    
Sbjct: 13  IIVKKITVVAAGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTERQRKGIADYFTPTLVK 72

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
               S G +        +  +       +  TK     +  +   K    + +       
Sbjct: 73  TRQGSAGSYGLLGGSSLTDADTYQFRAGQTGTKTLTIPRDATGGAKDGGSKAKRTAALQE 132

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             +Q                                              ++  ++L+ L
Sbjct: 133 RLKQ---------------------------------------------KLQASEQLRQL 147

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           AK+                V    T  GI + ++D  N  MF   ++I  P+ + +++ I
Sbjct: 148 AKQ----------------VHLTMTPDGIRLDLLDDANFSMFRLGTTILTPQAVELIRAI 191

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            + +A     +++RGHTD+  ++     +NW LS  RA +  Q L++ GV E R  +I G
Sbjct: 192 AQSIAPDQNGLTVRGHTDSLQWKPGDPANNWSLSAGRAEATRQALLRFGVPEKRFRRIEG 251

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A     I  +P +  NRR+ IL+ D
Sbjct: 252 VADQEPLITDNPADPRNRRMSILLMD 277


>gi|16125820|ref|NP_420384.1| chemotaxis MotB protein [Caulobacter crescentus CB15]
 gi|221234581|ref|YP_002517017.1| chemotaxis motB protein [Caulobacter crescentus NA1000]
 gi|13422964|gb|AAK23552.1| chemotaxis MotB protein [Caulobacter crescentus CB15]
 gi|220963753|gb|ACL95109.1| chemotaxis motB protein [Caulobacter crescentus NA1000]
          Length = 298

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 47/312 (15%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF P                    
Sbjct: 26  AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP-------------------- 65

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                     ++       +        +  +++   + + + +
Sbjct: 66  -----------------------ASISSTTSGSGGILGGTSLGDDGAKADGKLSVVQQMA 102

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DN 210
            + +D+ K     ++ N +        +    LA K +      A+ +  +L  +     
Sbjct: 103 PEAQDVTKEAQSSETANLDSAS---EQALRDALAKKEQDSFASAAQSLRQSLQDMPELAE 159

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + K +L + T  G+ I ++DQ    MF ++S  P     V+L+ + +V+      ++I G
Sbjct: 160 LSKQILIDQTPEGLRIQLVDQEGRSMFKENSREPNDRARVLLRAVAKVINQLPNRVTISG 219

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HT A+ F      +W LS  RA ++ QVL  +GV +DR+ ++SG A+     A DP  + 
Sbjct: 220 HTSANAFGKKQDGDWALSAQRADASRQVLRSAGVDDDRVYQVSGKANSEPLYADDPTLAG 279

Query: 331 NRRIDILVEDRQ 342
           NRRI I++   +
Sbjct: 280 NRRISIVLLREK 291


>gi|296531741|ref|ZP_06894566.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957]
 gi|296267924|gb|EFH13726.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957]
          Length = 309

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 49/328 (14%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + +IIKK    +    + G WKI YADF+T +MAFFLVMW++++T +  ++ I Q+F   
Sbjct: 10  RPVIIKKH-HGEHDDEHGGQWKIAYADFVTAMMAFFLVMWLLSSTTESQREGIAQFFTAS 68

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
               + +  G  D       +  N+ D            D + G                
Sbjct: 69  SILDLPSGSGTLDGGRSVLLAGDNRQDALTQVDDGGARQDSQGG---------------- 112

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
                                           +S N        P  ++ +     ++R 
Sbjct: 113 --------------------------------ESANDGAAAQAAPQQQDAVRDPIERQRF 140

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L  ++   +         + +  E T  G+ + I D+   PMF  +++ P P    +L
Sbjct: 141 DALKAELERQMQTDALREFSQNIQLEMTPEGLRLQIFDRDGQPMFAPAATEPTPRLARIL 200

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           + +G VLA     + + GHTDA PF+     NW LS DRA +A + L +SGV   R+ ++
Sbjct: 201 EVVGSVLASVPNEVVVSGHTDAQPFQRGNYSNWELSADRANAARRALERSGVRPARMFRV 260

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340
              A     +A +P +  NRRI + V  
Sbjct: 261 EAKAAVEPLLAEEPNDPRNRRIAVTVLR 288


>gi|163744356|ref|ZP_02151716.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381174|gb|EDQ05583.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 309

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 32/330 (9%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            + ++ IIIK+  A     ++ G WK+ YADFMT +MAFFL++WI+ A+D++  + +  Y
Sbjct: 3   DKKNELIIIKRYDAEGGHAHHGGGWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLANY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F P   +  ++S    D +                  +    +   + +T   K+     
Sbjct: 63  FTPTISDGGSSSDAAADLR----------------PLMAAGVMTGAVDNTGNVKKPTFGR 106

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +N   + +S+  +     +   ++  +    +     +  +E              A +R
Sbjct: 107 DNPMMVFDSRLRDKPSEVVVEYADAPEPAAAADPATVAAVEE--------------AERR 152

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K  +  +A+ I+  + S     ++ + V  E +   + + ++DQ    +F + S+   P+
Sbjct: 153 KSEIDRMAEDIAERITSDGELSDLARNVRLEKSNGALTVQVLDQDERSLFTRGSAEVTPK 212

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           T  +L  IG+V+A   + + I GHTDA+ F  N    NW LS DRA +  + LM +G++ 
Sbjct: 213 TRELLLAIGDVIAEQNQPVEIIGHTDAATFGANNGYTNWELSADRANATRRTLMAAGING 272

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDI 336
            R  ++SG A  +     DP+ + NRRI I
Sbjct: 273 ARFMRVSGVADTQPINTIDPLAAENRRISI 302


>gi|260429438|ref|ZP_05783415.1| OmpA/MotB [Citreicella sp. SE45]
 gi|260420061|gb|EEX13314.1| OmpA/MotB [Citreicella sp. SE45]
          Length = 291

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 53/333 (15%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   +IIK+K       ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  Y
Sbjct: 11  DSNVAPVIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 70

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                    R S         E +   +V  ++G+           
Sbjct: 71  FSPTIAV---------------SRMSGGGDGTLGGESVFTEAVLPRVGTGATSLNPMAQN 115

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                    Q  E  K                                  ++E   + + 
Sbjct: 116 RARGSSDPGQARETGK----------------------------------AEEPGASDED 141

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            K L+DL   +      ++ DN+++ ++   T  G+++ + +  +  +FD++ + P+P  
Sbjct: 142 LKALEDLL--MGRGGETMIDDNLMRHIVTRVTDEGLVVELFETEDARLFDETGA-PMPLL 198

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   I  V    T  +++ GHT A P       +W +S  RA    Q+L+  G+   R
Sbjct: 199 RDLAGVIARVSRLVTNPLAVEGHTTAFPIVLARDPSWDVSTRRADDFRQLLLAGGLDRKR 258

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           I +++  A       S+PM++ N R++++   +
Sbjct: 259 IDRVTAHADREP-SQSNPMDARNNRLEVIFLRK 290


>gi|94312620|ref|YP_585829.1| flagellar motor rotation proteinOmpA/MotB [Cupriavidus
           metallidurans CH34]
 gi|93356472|gb|ABF10560.1| OmpA/MotB, protein that enables flagellar motor rotation
           [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 65/330 (19%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+ KK      P+   SWKI YADFMT +MA FLV+W+++++       + +YF    K 
Sbjct: 10  IVIKKAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSSSPKVLVGVAEYFRTPLKV 69

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            +             + S    +     + +T    ++    TN                
Sbjct: 70  AIAGG---------DKSSLSTSVIPGGGKDVTAKDGEIMKAQTND--------------- 105

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                                   + D ++  ++ E+  L  L          KKRL+ +
Sbjct: 106 -----------------------PAADAQRRRDQIESERLRGL----------KKRLEQI 132

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +      +  V       +L + T  G+ I I+D +N PMF   S+   P    +L++I
Sbjct: 133 IE------NNPVLRQFRPQLLLDITSEGLRIQILDTQNRPMFRTGSAAVEPYMRTILREI 186

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           G VL      +S+ GHTD++ +        NW LS DRA ++ Q L+  G+ E ++ ++ 
Sbjct: 187 GPVLNELPNKVSLSGHTDSAKYMMGQRAYSNWELSADRANASRQELVAGGMEEGKLLRVL 246

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G A       +DP+   NRRI I+V +++ 
Sbjct: 247 GLADTMPLEKNDPLAPVNRRISIVVLNQRA 276


>gi|296103598|ref|YP_003613744.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058057|gb|ADF62795.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 301

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 72/334 (21%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N   +II +K       ++ G+WKI YADFMT +MAFFLVMW+++ + D  ++ I  YF
Sbjct: 2   KNVTPVIISRKRKKKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLSQSTDMERELIADYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  M          N  + S  + +     + I K   ++  G      +++R E 
Sbjct: 62  RMPLKPSMA---------NGDKTSLSDSVIPGGGDDILKRQGEVFKGQIASIDKHKRFE- 111

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                           SL +  EK + + ++                             
Sbjct: 112 ----------------SLKQAKEKLQKMIETDP--------------------------- 128

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            RL +    I   L+         G+L + T         D ++ PMF   S +P     
Sbjct: 129 -RLNNFKSNILLNLTN-------DGLLIQIT---------DSQDRPMFRVGSELPESYMN 171

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +LQ +  +L      +S+ GHTD+ P+        NW LS  RA +A +VL++ G++++
Sbjct: 172 GILQALVPLLQELPNALSLTGHTDSLPYAGGDGGYSNWELSAGRANAARRVLVRGGLNDE 231

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           R  ++ G A       + P ++ NRRI ILV  R
Sbjct: 232 RFLRVIGTASRMPLENTSPDSAVNRRISILVLSR 265


>gi|290474940|ref|YP_003467824.1| flagellar protein [Xenorhabdus bovienii SS-2004]
 gi|289174257|emb|CBJ81046.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Xenorhabdus bovienii SS-2004]
          Length = 333

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 121/338 (35%), Gaps = 74/338 (21%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N+  +I  KK       +  GSWKI YADFMT +MAFFLVMW+++        +I  Y
Sbjct: 2   RANNVTVIRVKKRKKHGEKHCGGSWKIAYADFMTAMMAFFLVMWLLSIASPQELTSIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    +  +       D  NP                                 +  + +
Sbjct: 62  FRTPLQVAINQGPQSSDSTNPIPGGGD---------------------------EVFQQD 94

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +F  S   +S   K  L R  ++   L                            +  
Sbjct: 95  GEVFRESKLVESNKEKRRLNRLHQQLDQL----------------------------IIT 126

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL++L   +       + D + +G+  +              N PMF   S+      
Sbjct: 127 DPRLKELRPHL-------LIDMMDEGLRIQIIDR---------ENRPMFMIGSAKVESYM 170

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +LQ I  +L      +S+ GHTD   + N      NW LS DRA ++ + L+  G+ E
Sbjct: 171 RDILQAIAPILNEIPNKVSLSGHTDNLQYANGQRGYSNWELSADRANASRRELLNGGLDE 230

Query: 307 DRISKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQG 343
            +I ++ G A         DP    NRRI I+V ++  
Sbjct: 231 VKILRVVGMASTVSMQKGIDPNAPVNRRISIVVLNKDA 268


>gi|94495402|ref|ZP_01301982.1| flagellar motor component [Sphingomonas sp. SKA58]
 gi|94424790|gb|EAT09811.1| flagellar motor component [Sphingomonas sp. SKA58]
          Length = 350

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 59/342 (17%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
                N+   + +I+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +
Sbjct: 4   KKRGANEPEPRPVIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           KA+  YF P    L  A             S+ +   +  D    K++     G  N   
Sbjct: 64  KALADYFTPTLVELKMA-------------SAGSTGLMGGDSLTGKDNYPTTGGVGNLSI 110

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
              R                                                       K
Sbjct: 111 TIPRDATGTKDQGG---------------------------------------------K 125

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            +    +++ + + K + + ++      + K V F  TR G+ I +ID+ +  MF   + 
Sbjct: 126 AMRAADRQKFESIKKDLEARMNRKGLSRLRKNVRFTETREGLRIDLIDEADFAMFAMGTD 185

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301
             +PE   ++ ++  VL      + +RGHTDA P+ +  A +NWRLS  RA S  Q L  
Sbjct: 186 RLVPEARALVGEVASVLKTMPNDLIVRGHTDALPYASGKAMNNWRLSSARAESTRQALAD 245

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           SG+   R ++I G A     +  +  +  NRR+ I++   +G
Sbjct: 246 SGIGNPRFARIEGVADREPFVKDNRYDPRNRRMSIILGWSRG 287


>gi|327478801|gb|AEA82111.1| OmpA/MotB domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 311

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 124/341 (36%), Gaps = 66/341 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M S  DK +  ++ +I++++        + G+WK+ +ADF   +MA F+V+WII      
Sbjct: 1   MKSR-DKGKAGEREVIVRRRTKKGHGDEHGGAWKVAFADFTLAMMALFMVLWIIQ----- 54

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
                                              N  + +  E  +   VD   G  + 
Sbjct: 55  --------------------------------PQMNLTNPAFGEQESNPLVDGGAGIFDG 82

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                   + +       + +  +    R   +                      P    
Sbjct: 83  TSTSPLELDGVPLRPAPDEPQRPREETARGEGE---------------------TPADGT 121

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            +  +    + L  L ++++  +  L        +  +    G+ I I D +   MF + 
Sbjct: 122 RRYASTAELQALAALMQEVAGQVDALA------NLEVDVVPQGLRILIKDDQQRFMFQRG 175

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVL 299
           S++  P    +L  +  VL+     + I GHTDA+P+R     DNW LS DRA  A  VL
Sbjct: 176 SAVLNPHFAKLLAVLAGVLSKVENKLIISGHTDATPYRLQSGYDNWNLSGDRALRARNVL 235

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +G+    + +++  A         P + ANRR++IL+  
Sbjct: 236 VDAGLPGRSVLQVTAQADVMPLRPEAPEDGANRRVEILLLT 276


>gi|302383636|ref|YP_003819459.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302194264|gb|ADL01836.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 298

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 142/333 (42%), Gaps = 50/333 (15%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           +D+ I+IKK   +    ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF 
Sbjct: 2   SDRPILIKKVKKVVGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 61

Query: 71  PFGKNLMTASKG-IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P   +  T+  G I    +  E  S++   +S+ E     + +                 
Sbjct: 62  PASVSQTTSGSGGILGGTSLGEDGSKSSGSMSVLEQQAPEAPEDAPEDVGTNANLAA--- 118

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                           +L + I   E       ++    AM+R 
Sbjct: 119 ----------------------------ASEEELRQEIAAREAAEFASAAESLRQAMQRM 150

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L +L+K++                + + T  G+ I ++DQ    MFD++S+ P     
Sbjct: 151 PELAELSKQL----------------IIDQTPEGLRIQLVDQEGRSMFDQNSARPNARAQ 194

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307
           V+L+ I  V+      ISI GHT A      A    +W LS +RA ++  +L  +GV  D
Sbjct: 195 VLLRAIAGVVNRLPNRISISGHTSAVAGSGRASVATDWPLSANRADASRAILQAAGVDAD 254

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+  ++G A        DP  + NRRI I++  
Sbjct: 255 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVLLR 287


>gi|162147455|ref|YP_001601916.1| chemotaxis protein motB (motility protein B) [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545564|ref|YP_002277793.1| OmpA/MotB domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786032|emb|CAP55614.1| putative chemotaxis protein motB (Motility protein B)
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533241|gb|ACI53178.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 368

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 15/340 (4%)

Query: 7   KNQENDQFIIIKKKVAID--DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           KN    Q I+I++    D  +  ++ G+WKI YADFMT +M+FFLVMW++NAT D+ ++ 
Sbjct: 3   KNDNKQQPILIRRSDGEDSEEGGHSGGAWKIAYADFMTAMMSFFLVMWLLNATTDEQRRG 62

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           I Q+FNP       A          P           I    T + V           + 
Sbjct: 63  IAQFFNPMADRDTHAQPTDSMLDVQPSPLWGGSAIRRIKNGDTLDPVQDGAPGARNAPRT 122

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
            R + +   ++   ++    +        G     +  +               +  + +
Sbjct: 123 VRQDRSSDDITLGLRTRLNPSPPAIVPIGGPQTGAARSVGYIGAGSPAEASAEEAAVEQM 182

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A   ++ +QD               +    V  +  R  I I + D  NTPMFD  S+ P
Sbjct: 183 ASGLRQAIQD----------NPEIRDAASDVSIQIGRDDIRIELRDSNNTPMFDSGSATP 232

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301
                 +L +I   LA   E ISI G+TD +P+    +    NW LS+ RA  A + L++
Sbjct: 233 NRLGKQMLAQIAAWLAPMPEPISIVGYTDGAPYHVGRQWGMSNWTLSVMRADHARETLVQ 292

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +G  +  I  +SG +   L + SDP  + NRR+ +++  R
Sbjct: 293 AGYPDRNILDVSGRSDRDLALPSDPSGAGNRRVVLIMHRR 332


>gi|86136711|ref|ZP_01055289.1| chemotaxis protein MotB [Roseobacter sp. MED193]
 gi|85826035|gb|EAQ46232.1| chemotaxis protein MotB [Roseobacter sp. MED193]
          Length = 277

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 59/332 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q     IIIKKK       ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  Y
Sbjct: 4   QNGLAPIIIKKKKVSGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P       +  G                                           + +
Sbjct: 64  FSPSIPLSRISGGG---------------------------------------NGAFQGD 84

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +        Q      +    D++K +     +D EK+    +   +    + +      
Sbjct: 85  SMFTEDIQPQSGTGASDINPMDAQKAQGETGVSDAEKAEEDSKFRAIEEQLQGRGG---- 140

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                            +V+  + + ++   T  G+++ + +     +F+   + P P  
Sbjct: 141 ---------------ESMVSVEMSRHIITRVTDEGLIVELFETDGVSLFEAGGAEPTPLF 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +++ +  V A  T  I+I GH  + P        W +S  RA  A  +L   G+   R
Sbjct: 186 RDLVRMVARVSASVTNDIAISGHIQSHPVVLAQNPVWEMSHARANVARTLLESGGMKSSR 245

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I +I+G A  +L + ++PM   N R++I++  
Sbjct: 246 IHRITGHADRKLAV-TNPMAVRNNRVEIILLR 276


>gi|300697987|ref|YP_003748648.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CFBP2957]
 gi|299074711|emb|CBJ54269.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CFBP2957]
          Length = 314

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K                            + 
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSPTAQR 107

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           + NI   S+       K  +    E    + +                            
Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFGNASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|300694372|ref|YP_003750345.1| chemotaxis protein motb (motility protein b), flagellar motor
           protein [Ralstonia solanacearum PSI07]
 gi|299076409|emb|CBJ35725.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum PSI07]
          Length = 314

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +    S   K ++         +V  +             
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILNGSPAIKQNMPQPNPSPSPTVQRQ------------- 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             N+   S+       K  +    E    + +                            
Sbjct: 109 -RNVRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|83747601|ref|ZP_00944638.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|207738644|ref|YP_002257037.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum
           IPO1609]
 gi|83725781|gb|EAP72922.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|206592012|emb|CAQ58918.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum
           IPO1609]
          Length = 314

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K ++         +V  +             
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPAIKQNMPQPNPSPSPTVQRQ------------- 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             NI   S+       K  +    E    + +                            
Sbjct: 109 -RNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGSALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|17549629|ref|NP_522969.1| flagellar motor protein MotB [Ralstonia solanacearum GMI1000]
 gi|17431883|emb|CAD18561.1| probable chemotaxis (motility protein b) transmembrane [Ralstonia
           solanacearum GMI1000]
          Length = 314

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K                         Q  + 
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSQTVQR 107

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           + NI   S+       K  +    E    + +                            
Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGVALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|34497482|ref|NP_901697.1| flagellar motor protein MotB [Chromobacterium violaceum ATCC 12472]
 gi|34103337|gb|AAQ59699.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472]
          Length = 306

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 135/334 (40%), Gaps = 69/334 (20%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  Q  I+ KK+      ++ G+WKI YADF+T +MAFFL+MW++ +    T   I +YF
Sbjct: 3   DESQRPIVVKKIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSASQGTLNGISEYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  ++   G  D  +  +                 N +  + G  N+    Q    
Sbjct: 63  KTPLKVALSGGAGAGDATSVIKGGG--------------NDITKQAGQVNKAGAKQE--- 105

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                                             E    ++E   L  L ++    + + 
Sbjct: 106 ----------------------------------EVMQKQKEQARLNQLQQKIQQTIDQS 131

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +  +    ++   ++        +G+  +             +N PMFD  SS  LP T 
Sbjct: 132 ELFKQYKNQLKLEMTP-------EGLKIQIVDE---------QNRPMFDSGSSRMLPHTR 175

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
           V+LQ++   L      ISI GHTDA PF        NW LS DRA +A + L+  G++E+
Sbjct: 176 VLLQQLAPELNQLPNRISISGHTDAKPFGGGQGGYSNWELSADRANTARRELVAGGLTEN 235

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +I ++ G A     I SD  +  NRRI I+V ++
Sbjct: 236 KILRVVGLASANPLIKSDVFSPENRRITIVVLNK 269


>gi|299069796|emb|CBJ41076.1| Chemotaxis protein motB (Motility protein B), flagellar motor
           protein [Ralstonia solanacearum CMR15]
          Length = 314

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K                         Q  + 
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSQTVQR 107

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           + NI   S+       K  +    E    + +                            
Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGVALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMQP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|167647023|ref|YP_001684686.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167349453|gb|ABZ72188.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 299

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 131/311 (42%), Gaps = 44/311 (14%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW++N T  + K+ I  YF P   +  T+            
Sbjct: 26  AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAPASISSSTS------------ 73

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                            +   L   S          + ++      +  +         +
Sbjct: 74  ----------------GSGGILGGTSLGDDGAKADGKMSVIQQMAPEAPDKTTKDGQSST 117

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
               D      L  ++ K+E       ++    +++    L +L+K+I            
Sbjct: 118 SASLDSASEEALRDALAKKEQDSFASAAQSLRQSLQDMPELAELSKQI------------ 165

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
               + + T  G+ I +IDQ    MF ++S  P     ++L+ I +++      I+I GH
Sbjct: 166 ----MIDQTPEGLRIQLIDQDGRSMFKENSREPNDRARILLRAIAKIINQLPNRITISGH 221

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           T AS     A  +W LS +RA ++ QVL  +GV EDRI ++SG A+     A DP  + N
Sbjct: 222 TSASAAGKRADSDWALSAERADASRQVLRGAGVDEDRIYQVSGKANSEPLYADDPTLAGN 281

Query: 332 RRIDILVEDRQ 342
           RRI I++   +
Sbjct: 282 RRISIVLLREK 292


>gi|254477135|ref|ZP_05090521.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214031378|gb|EEB72213.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 278

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 120/311 (38%), Gaps = 60/311 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF+P       +  G         
Sbjct: 27  AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGG--------- 77

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                               ++        Q      ++   D+
Sbjct: 78  ------------------------------NGAFNGDSMFTEQIKPQNGTGASDTNPMDA 107

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210
           ++ +      D ++    +E                     + LA++++      +V+  
Sbjct: 108 QQAQGDTGVQDDQEREQTDET-------------------FRALAEELNGRGGESMVSLE 148

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + + ++   T  G++I + D   +P+F + +  P      +++ +  V       I++ G
Sbjct: 149 MAQHIITRVTDEGLVIELFDTETSPLFKEGTPEPTLLFRDIIEMVARVTGVVENNIAVGG 208

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HT + P        W LS  RA     +L   G    RI +++G A  +L  A +PM + 
Sbjct: 209 HTRSHPVVIANNPVWELSHARADMTRVMLESGGTKSKRIHRVTGHADRKLTDA-NPMAAR 267

Query: 331 NRRIDILVEDR 341
           N RI+I++  +
Sbjct: 268 NNRIEIVLLRK 278


>gi|315126001|ref|YP_004068004.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913]
 gi|315014515|gb|ADT67853.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913]
          Length = 331

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 137/335 (40%), Gaps = 43/335 (12%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +  +Q I+IK+         + G+WK+ +ADF   +MAFF+VMWI+  T++  ++ I  Y
Sbjct: 2   ENKNQEIVIKRSRRRATEKPHGGAWKVAFADFTLAMMAFFMVMWIMAITNESEREEIAHY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                 ++      IFD QN P       +DL     + K+   L+ G T        + 
Sbjct: 62  MRT--HSIFDGGPAIFDPQNSP-----FPVDLGGSPSVIKH---LESGITPPDSPKPGMS 111

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +     + + +  +                  L  +I+ +           + +    
Sbjct: 112 EVLQVPDGTVEPKAGQGE---------------KLNSAIDSQFEASSELSLLLESIDELS 156

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K+ L                  +   +L E    G+ + I D ++  MF++S S   P  
Sbjct: 157 KEEL------------------LKNNLLVEEVPLGLRVIIRDDKHHQMFERSKSQMTPFF 198

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   +G ++      I I GH+DAS F + +  NW +S DRA  A +V+   G+   +
Sbjct: 199 EDLFLYLGGLVKDINNKIIISGHSDASLFIDGSSRNWDISGDRAQQARKVMTMGGMPSSQ 258

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + +++ F+ +R     +   S NRR+++L+  +  
Sbjct: 259 VLQVNAFSSNRPLNKENQKASENRRVELLILTKDA 293


>gi|307293778|ref|ZP_07573622.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879929|gb|EFN11146.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 351

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 137/343 (39%), Gaps = 60/343 (17%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
                N+   + II+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +
Sbjct: 4   KKRGANEPEPRPIIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           K +  YF P    +                S+ +      D    K +     G  N   
Sbjct: 64  KGLADYFTPTLVQVKEG-------------SAGSNGMFGGDSMTAKENYPTTGGQGNLAI 110

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
              R                     +   ++G    K+ D                    
Sbjct: 111 TIPR-------------------DASGTKDQGGKATKAAD-------------------- 131

Query: 183 ILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                 + + + + K++ + ++     + + K V F  TR G+ I +ID+ +  MF   +
Sbjct: 132 ------RAKFESIKKELEARMARRHGINKLRKNVRFTETREGLRIDLIDEADFAMFAMGT 185

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300
              LP+   ++ ++ + +      + +RGHTD  P+ +    +NW LS  RA +  + L 
Sbjct: 186 DRLLPQARELVDEVAKTIRTMPNPLIVRGHTDGLPYSSGQTMNNWMLSSARAEATRKALA 245

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            SG+  DR ++I G A        D  +  NRR+ I++   +G
Sbjct: 246 ASGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIILGWSRG 288


>gi|126417355|gb|ABO13880.1| MotB [Ralstonia solanacearum]
          Length = 314

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 66/336 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K ++         +V  +             
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPAIKQNMPQPNPSPSPTVQRQ------------- 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             NI   S+       K  +    E    + +                            
Sbjct: 109 -RNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +          +DQ+N PMF  +S+   P 
Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 LRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++++++ G         +D  N  NRRI I+V + +
Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272


>gi|32490782|ref|NP_871036.1| flagellar motor protein MotB [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165988|dbj|BAC24179.1| motB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 326

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 125/335 (37%), Gaps = 72/335 (21%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + +  +I+ +      + ++ GSWKI YADFMT +MAFFLVMW+++ +    ++ I  YF
Sbjct: 2   KKNSPMILIRWKKSQHSGHHGGSWKIAYADFMTAMMAFFLVMWLLSTSTPQQREQIADYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K+ +                                             Q     +
Sbjct: 62  RIPMKDSV---------------------------------------------QNSSKSS 76

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   Q  ++  N       + ++L    D+ +      N             ++  
Sbjct: 77  ISPIPMPKQGGDNIDNKTNNIKNRERELNHQKDIRRLNKTRYN---------LQQMLRNN 127

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            RL+D    +  TL       + +G+  E             +  PMF        P   
Sbjct: 128 PRLRDFQSNMKITL-------VHEGLRIEIID---------SKKRPMFTTGGKEIAPYMR 171

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +++ +  VL      IS+ GHTD  P+ N      NW LS DRA ++ + L++ G+  D
Sbjct: 172 YIMRILAPVLNELPNRISLAGHTDNQPYINGERGYSNWELSADRANASRRELIEGGLMND 231

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +I ++ G A+    +     +++ RRI I++  +Q
Sbjct: 232 KILRVIGMANTMSDVNKHHHHASQRRISIIILTKQ 266


>gi|254473231|ref|ZP_05086629.1| chemotaxis MotB protein [Pseudovibrio sp. JE062]
 gi|211957952|gb|EEA93154.1| chemotaxis MotB protein [Pseudovibrio sp. JE062]
          Length = 286

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 119/324 (36%), Gaps = 53/324 (16%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
                 P     W + +AD M++L+ FF+++   +  D    + +     + FG   +T 
Sbjct: 3   GRKKQAPAGAPGWMVTFADLMSLLVCFFVLIISFSVQDKQKLQVVAGSIKDAFGIKQVTK 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+ + +  P R      D++ ++ IT                                
Sbjct: 63  RAGVLEIEGVPLRDFMK--DITYEKQIT---------------------------DADFA 93

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +E       +  E      K  D+EK                   A+  ++  Q++ +  
Sbjct: 94  TESHPEKRKQGPEANTHTTKKADIEKPRQF------------ATAAVSLRQAFQEMPE-- 139

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      I   ++ E T  G+ I I+DQ    M+ + S  P   T  +L K+  VL
Sbjct: 140 --------ITEISNNIILEETDEGLNILIVDQEGRSMYPEGSKYPYEITRRLLAKMAPVL 191

Query: 260 AHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A     + I GHT       + +   W LS DRA +A Q+L + G+  + I  + G A  
Sbjct: 192 AKLPNRVRITGHTTTGQLITSPSETGWELSADRANTARQILSEYGLPSNNIHSVVGKADT 251

Query: 319 RLKIASDPMNSANRRIDILVEDRQ 342
                +DP  +ANRRI IL+   +
Sbjct: 252 EPLFPNDPYLAANRRISILLMAEE 275


>gi|294013095|ref|YP_003546555.1| chemotaxis MotB protein [Sphingobium japonicum UT26S]
 gi|292676425|dbj|BAI97943.1| chemotaxis MotB protein [Sphingobium japonicum UT26S]
          Length = 351

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 132/337 (39%), Gaps = 58/337 (17%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
                N+   + II+KK V      ++ G+WK+ YADF+T +MAFFL+MW++ AT +  +
Sbjct: 4   KKRGANEPEPRPIIVKKIVVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           K +  YF P    L   S G             +      D    K +     G  N   
Sbjct: 64  KGLADYFTPTLVQLKEGSAG-------------SNGMFGGDSMTAKENYPTTGGQGNLAI 110

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
              R                     +   ++G    K+ D  K            + KE 
Sbjct: 111 TIPR-------------------DASGTKDQGGKATKAADRAK---------FESIRKEL 142

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
              M R++ ++ L                +K + F  T  G+ I +ID+ +  MF   + 
Sbjct: 143 EARMARRQGIRKL----------------LKNIRFTETHEGLRIDLIDEADFAMFAMGTD 186

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMK 301
             LP+   ++ ++   +      + +RGHTD  P+      +NW LS  RA +  + L  
Sbjct: 187 RLLPQARELVNEVAATIRTMPNPLIVRGHTDGLPYSAGQTMNNWMLSSARAEATRKALAA 246

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           SG+  DR ++I G A        D  +  NRR+ I++
Sbjct: 247 SGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283


>gi|323224726|gb|EGA08995.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 309

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 118/340 (34%), Gaps = 74/340 (21%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT                     A+ 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMT---------------------AMM 39

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            +F       +++ K +              +       I ++ +        Q++    
Sbjct: 40  AFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGTGLPIAESPIPGGGDDYTQQQGEVE 99

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + NI                                                 +++   
Sbjct: 100 KQPNI-------------------------------------------------DELKKR 110

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             + RL  L   +   +        ++  +  +  + G+ I IID +N PMF   S+   
Sbjct: 111 MEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVE 170

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
           P    +L+ I  VL      IS+ GHTD  P+ N      NW LS DRA ++ + L+  G
Sbjct: 171 PYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGG 230

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 231 LDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270


>gi|89067516|ref|ZP_01155029.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516]
 gi|89047085|gb|EAR53139.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516]
          Length = 270

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 133/330 (40%), Gaps = 67/330 (20%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           ++  IIIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +        
Sbjct: 5   SNAPIIIKRKKITGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQR-------- 56

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                     KGI D  +P                       + I   +         +N
Sbjct: 57  ----------KGIADYFSP----------------------TIPINRISGGGDGAFGGDN 84

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           IF  +   QS     +                            +P  + E+   +   +
Sbjct: 85  IFTDNTLAQSGTNPGAT------------------------GDAVPGATAEEAAQVAALE 120

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++++  + +      ++AD  ++ ++ + T  G++I I D    P+F   ++ P P T+ 
Sbjct: 121 QIEE--QLLGRGGESMIADEALQHIVTKLTDEGLVIEIFDLDGAPLFAPGTAEPEPVTVE 178

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +      VLA     +++ GH  A P        W LS  RA    ++L  SG + +RI 
Sbjct: 179 LAAVFARVLALVDNDVALAGHVRARPVVVADSRVWPLSTSRATRFRELLEASGQAPERIV 238

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +++G A     +  + ++  N R++++V  
Sbjct: 239 RVTGHADRAPAVR-NAVSLRNNRLEVVVLR 267


>gi|187926231|ref|YP_001892576.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|241665719|ref|YP_002984078.1| flagellar motor protein MotB [Ralstonia pickettii 12D]
 gi|187727985|gb|ACD29149.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|240867746|gb|ACS65406.1| OmpA/MotB domain protein [Ralstonia pickettii 12D]
          Length = 315

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 127/337 (37%), Gaps = 66/337 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K ++         +V  +             
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPALKQNMPQPNPSPSPTVQRQ------------- 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             NI   S+       K  +    E    + +                            
Sbjct: 109 -RNIRDESDDAALNKLKQKIAEMVETNPVMSQFKHQ------------------------ 143

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                             L+ D   +G+  +             +N PMF  +S+   P 
Sbjct: 144 ------------------LLIDMTTEGLRIQIVDQ---------QNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGTALNDVPNPISLSGHTDATQYATQHGYSNWELSADRANASRRELVAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++S++ G         ++  N  NRRI I+V + + 
Sbjct: 237 EKVSRVVGLEASVPLDKTNIYNPINRRISIVVLNARA 273


>gi|258592514|emb|CBE68823.1| Outer membrane protein, OmpA/MotB family [NC10 bacterium 'Dutch
           sediment']
          Length = 308

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 133/341 (39%), Gaps = 66/341 (19%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   +KN    + I+   K       ++ G+WK+ YADF+T +MA F+V+WI+      
Sbjct: 1   MSEETEKNDNRPRKIV---KKKGGHGGHHGGAWKVAYADFVTAMMALFIVLWIVG-QSKS 56

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK+AI  YF          S G    +      S+    + + +  ++         T +
Sbjct: 57  TKEAIAGYFKDPSNFSKGGSPGGLQSKGSIGVLSKGGDPVVVAQQASQTMSPEGSEDTQK 116

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
             +                                             +++   L   ++
Sbjct: 117 SPED-------------------------------------------KEQDRIHLEEAAE 133

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           +    ++R   LQ L  +I                  E T  G+ + +I+      FD  
Sbjct: 134 QFRQVIQRVPTLQALQGQI----------------RIEITSEGLRVQLIEGNRDSFFDLG 177

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQ 297
           SS   P T  +L  I   +A     + + GHTDA P+         NW LS DRA SA +
Sbjct: 178 SSRLKPVTRQLLAAIAHEVAKLPNQVVVEGHTDARPYSGNTGRDYSNWELSTDRANSARR 237

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + + G+  +++S++ G+A   L   +DP+++ANRRI ILV
Sbjct: 238 TMEEVGLRRNQVSRVIGYADQHLFNPTDPLDTANRRISILV 278


>gi|239908607|ref|YP_002955349.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239798474|dbj|BAH77463.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 346

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 123/313 (39%), Gaps = 36/313 (11%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
              + GSWK+ YAD +T +MAFFL+MW+++    + K+ I  YFN F             
Sbjct: 20  AGAHGGSWKVAYADLVTAMMAFFLLMWLLSNAPQEKKEEIANYFNEFSLFNNPGPSATLL 79

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           +                            +G             ++      ++    + 
Sbjct: 80  DVG-------------------------GVGPPAAVVGTGEERPDVAIDRGGKEPTGGQG 114

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
               D   GK     T  E     +        +  +  A++++         I   L  
Sbjct: 115 QNVGDMAGGKHEAPKTKAEADALAKAQAKAEAAAAAQAQALEQQ---------IEQALEK 165

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
            V   +   V     +  + + I+D+   P++D      LP+   +L  + +V+      
Sbjct: 166 AV-PELAGQVSVTQDKDKVRVEIMDKAERPLYDLGGVALLPDAQRILAAVTDVIRKEGVK 224

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I GHTDA  + + A  NW LS  RA +A + ++ +G++ D +++++G++  R  +   
Sbjct: 225 VAIEGHTDAYRY-SGAYSNWDLSAGRALAARRFMVGAGLNPDAVAEVTGYSDTRPYVPGK 283

Query: 326 PMNSANRRIDILV 338
           P +  NRRI +L+
Sbjct: 284 PYDPKNRRISLLL 296


>gi|309778972|ref|ZP_07673742.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308922319|gb|EFP67946.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 315

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 130/337 (38%), Gaps = 66/337 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++       ++E 
Sbjct: 2   SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +    G  D+ +  + S   K ++         +V  +    ++       
Sbjct: 62  YFRTPLKVALFGGAGSGDQSSILQGSPALKQNMPQPNPSPSPTVQRQRNIRDES------ 115

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                                      ++  L  L ++    ++
Sbjct: 116 -------------------------------------------DDAALNKLKQKIAEMVE 132

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               +     ++       + D   +G+  +             +N PMF  +S+   P 
Sbjct: 133 TNPVMSQFKHQL-------LIDMTTEGLRIQIVDQ---------QNRPMFANASAEVQPY 176

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++G  L      IS+ GHTDA+ +       NW LS DRA ++ + L+  G+  
Sbjct: 177 MRTILRELGSALNDVPNPISLSGHTDATQYATQHGYSNWELSADRANASRRELVAGGMKP 236

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +++S++ G         ++  N  NRRI I+V + + 
Sbjct: 237 EKVSRVVGLEASVPLDKANIYNPINRRISIVVLNARA 273


>gi|103488396|ref|YP_617957.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98978473|gb|ABF54624.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 287

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 59/333 (17%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
           + II+KK +      ++ G+WK+ YADF+T +MAFFL+MW++ AT++  +KA+  YF P 
Sbjct: 10  RPIIVKKVIEAGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATNEKQRKALADYFAPT 69

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                  + G           S +K                                   
Sbjct: 70  IVQSKQDTAGSNGLFGGDSLVSVDK----------------------------------- 94

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
           Y   + Q+     ++ RD+  G         E                         KR 
Sbjct: 95  YPHGAAQTGTRAMTIPRDAVGGPREASGRARE----------------------AESKRF 132

Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             LA+ +   +        + + + F  T  G+ I I+D  +  MF   +S   P    +
Sbjct: 133 SLLAQSMKDRIQSKGDLRRLARNLHFTETMEGLRIDIVDDADFSMFALGTSQLTPAGAKL 192

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
             ++   +A +   + IRGHTDA+P+      +NWRLS+DRA      L   GV+ DR +
Sbjct: 193 FAEVAVPIAEAPNQLMIRGHTDAAPWSAKSGTNNWRLSVDRAEVTRHYLEFRGVASDRFA 252

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +I G A     I SD  +  NRRI I +  R  
Sbjct: 253 RIEGVADREPYIPSDRFDPRNRRISITLGWRPA 285


>gi|157376457|ref|YP_001475057.1| flagellar motor protein MotB [Shewanella sediminis HAW-EB3]
 gi|157318831|gb|ABV37929.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 325

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 125/338 (36%), Gaps = 36/338 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KK   D  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKEKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P R     I++   +   +T+  ++ + G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPVLEYQAGDDDSSGGVQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                +   +     +     KS +K E        +E      
Sbjct: 121 RG------------------EQRGGEASATAQEEAESKSESKSEAEAKAKSEEESKAQAA 162

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            + ++ D  KK++  L+  + D     +  E+    I+I I   R    F   S    P 
Sbjct: 163 AQDQINDEVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPR 216

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE 306
              V++++GE+L     ++++ GHTD     N     NW LS  RA +    L++    +
Sbjct: 217 FKPVIRRVGELLKDVPGIVTVSGHTDDMRISNELYSSNWDLSSKRAVAVAHELIRVKGFD 276

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            R  K+ G A+    +A+D     + NRR++I +E  +
Sbjct: 277 QRRMKVVGMANSDPLVANDSPGNRARNRRVEIAIEQGK 314


>gi|146278768|ref|YP_001168927.1| flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557009|gb|ABP71622.1| Flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 278

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 135/335 (40%), Gaps = 62/335 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  
Sbjct: 3   GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLAD 62

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           Y               F+   P  R S         + +  +    + G           
Sbjct: 63  Y---------------FNPTIPMNRVSGGGDGAFGGDSVFHDRTMTQTG----------- 96

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                        E          E+G                          E   A +
Sbjct: 97  --------TGAVDERATPENKARGERG--------------------------ETGEAAE 122

Query: 188 RKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + RL+++ K + +     +  + +++ ++   T  G++I I D  + P+F   +  P P
Sbjct: 123 EQARLEEVEKLLKARTGESMTMERLLRHIVTRITDEGLVIEIFDLPDVPLFLGDTDQPEP 182

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               + + + EVL  +T  I++ GH  + P   I    W LS  RA    +++  +G+  
Sbjct: 183 ILPQIARLLAEVLPITTNRIAVSGHVRSYPITLIRNPAWDLSALRAQRMRELIESAGLPG 242

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +R  +ISGFA  +     DPM   N R+++++  +
Sbjct: 243 ERTQRISGFADRKPATP-DPMAVRNNRLEVILLRK 276


>gi|149189846|ref|ZP_01868126.1| chemotaxis LafU protein [Vibrio shilonii AK1]
 gi|148836332|gb|EDL53289.1| chemotaxis LafU protein [Vibrio shilonii AK1]
          Length = 329

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 128/333 (38%), Gaps = 60/333 (18%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+     D   + G+WK+  ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEQVVFKRSGRRHDHEYHGGAWKVALADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                    ++  +FD        S + IDL+ D  +T                      
Sbjct: 62  Q-MASVFDKSTGSLFDTS-----QSISPIDLASDSSVT---------------------- 93

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +   S H   S  +    G                     P            +
Sbjct: 94  ------SRHDSVHTVTSFFQGDRDG---------------------PESDSLINGTFDTQ 126

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +RL+ LAK ++  +  + AD     V    T  G+ I + D     MF +  S   P   
Sbjct: 127 ERLEALAKVVNEMMRQINADG---NVDVTVTPQGLRIVLQDDYKQNMFRRGGSTLTPFFE 183

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L  +  V       + I GHTDA+ +R       NW LS  RA SA Q L+  G+ E 
Sbjct: 184 DLLLALAPVFQRVENPMIISGHTDATQYRKAFSSSSNWELSSSRANSARQTLVAGGMPEQ 243

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G +   L    DP +S NRRI++ +  
Sbjct: 244 RVLQVTGMSDRALLNQQDPKSSENRRIELFILT 276


>gi|254487666|ref|ZP_05100871.1| chemotaxis protein MotB [Roseobacter sp. GAI101]
 gi|214044535|gb|EEB85173.1| chemotaxis protein MotB [Roseobacter sp. GAI101]
          Length = 280

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 124/332 (37%), Gaps = 57/332 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   +IIK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y
Sbjct: 6   HANAAPVIIKRKKVVKGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADY 65

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F P                          I+            +         K      
Sbjct: 66  FTPTIA-----------------------INRISGGGDGLFGGESIFTEMTLPKNGTGAT 102

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           + +  +   +  +    +   D E   +L K  D                          
Sbjct: 103 SPMTPVEGQESGDVGAGTNGPDEEGNAELFKVVD-------------------------- 136

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                  A+ +      +V DNI + V+   T  G++I + D  + P+F      P    
Sbjct: 137 -------AQLMGRGGESMVMDNIARHVITRQTEEGMVIELFDVEDVPLFKNGGDQPTQML 189

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+ I +     T  I++  H  ++P   +    W LS  R      +L K GV   R
Sbjct: 190 RELLEVIVDASKIVTNKIAVAAHVRSNPIVAVENPVWDLSAKRGTQTRILLEKLGVKPAR 249

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I +++GFA  +   A D M+  N R++I++  
Sbjct: 250 IERVTGFADRKP-AAIDTMDVRNNRVEIILLR 280


>gi|269965067|ref|ZP_06179232.1| flagellar motor protein [Vibrio alginolyticus 40B]
 gi|269830370|gb|EEZ84595.1| flagellar motor protein [Vibrio alginolyticus 40B]
          Length = 315

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 126/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D ++ +                             + +  + +
Sbjct: 127 GGQSPETSTQNNESAEADMQQQQ-----------------------------SKEMSQEM 157

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A     + +  D   + NRR++I +   +
Sbjct: 271 RVRGMADTEPLLPNDSDDNRALNRRVEISIMQGE 304


>gi|92117049|ref|YP_576778.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91799943|gb|ABE62318.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 276

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 66/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK        +   W + +AD M ++M+FF+++   +  D++  K +     + FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMRDAFGVQT 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GI +    P R           E  +      +                      
Sbjct: 61  EVRYSGIIESDGLPTRPKLKNSAHVPPEETSATPTPNEQERFKTAG-------------- 106

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                                 L    +  + +   ++ LQD+ 
Sbjct: 107 ------------------------------------ARLKTDREFALASASLRQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + K ++FE T+ G+ + I+DQ    MF   S  P   T ++++K+ 
Sbjct: 131 E----------LTELSKHIMFEETKEGLNLEIVDQDGRSMFADGSREPYERTRMLIRKLA 180

Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   ISI GHT ++  P R+   D + LS DRA +  Q+L + G+    I  ++G
Sbjct: 181 APLKATPLRISITGHTASNFIPTRS-DYDGFDLSADRANAVRQILEREGLPPSHIFAVAG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            +        DP  +ANRR+ I +  
Sbjct: 240 KSDSMPLFPDDPSLAANRRVTITLMR 265


>gi|238788297|ref|ZP_04632091.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC
           33641]
 gi|238723543|gb|EEQ15189.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC
           33641]
          Length = 365

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 73/304 (24%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++ +       I +YF    K  +T+        +P      +    
Sbjct: 1   MTAMMAFFLVMWLLSVSSPQELTQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                                                             +++  ++ K 
Sbjct: 58  --------------------------------------------------TQQVGEVRKH 67

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D E+S  ++E Y L  L ++    ++   RL+ L                   +L    
Sbjct: 68  IDSEES--RKEEYRLNKLREKLDQLIESDPRLRALR----------------PHLLINMM 109

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+ I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+   
Sbjct: 110 DEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATG 169

Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA ++ + L+  G+ E ++ ++ G A           +  NRRI ILV
Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQTADDPVNRRISILV 229

Query: 339 EDRQ 342
            ++Q
Sbjct: 230 LNKQ 233


>gi|2130949|dbj|BAA20285.1| PomB [Vibrio alginolyticus]
          Length = 315

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              +   S     S   D ++ +                             + +  + +
Sbjct: 127 GGQSPATSTQNNESAEADMQQQQ-----------------------------SKEMSQEM 157

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A     + +  D   + NRR++I +   +
Sbjct: 271 RVRGMADTEPLLPNDSDDNRALNRRVEISIMQGE 304


>gi|332534966|ref|ZP_08410784.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035584|gb|EGI72076.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 306

 Score =  197 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 37/325 (11%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I    T    +     T Q++  +  +  + + +  + S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     D   G+    S +                S E+  +   +++  +L KKI+  
Sbjct: 115 GRQEQRGDKRGGESRSTSQEQ---------------SSEQATSAADQEQTNELVKKIAQQ 159

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + D     +  E+    I+I I   R    F   S+   P+   ++Q IG +L   
Sbjct: 160 LEKQIIDGA---IELESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGVLLKDV 213

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              I++ GHTD     N    +NW LS  RA +    L    G  ++R+  + G A  R 
Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQTVQGFDKNRMM-VVGRADTRP 272

Query: 321 KIASDPM--NSANRRIDILVEDRQG 343
            + +D       NRR++I +   + 
Sbjct: 273 LVPNDSNEDRRRNRRVEISILQGKA 297


>gi|77361278|ref|YP_340853.1| flagellar motor protein MotB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876189|emb|CAI87411.1| sodium-driven polar flagellar protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 306

 Score =  197 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 37/325 (11%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I    T    +     T Q++  +  +  + + +  + S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     D   G+    S +                + E+ ++   +++  DL KKI+  
Sbjct: 115 GRQEQRGDKRGGESRSTSKEQ---------------ASEQAISAADQQQTNDLVKKIAQQ 159

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + D     +  E+    I+I I   R    F   S+   P+   ++Q+IG +L   
Sbjct: 160 LEKQIIDGA---IELESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQEIGVLLKDV 213

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              I++ GHTD     N    +NW LS  RA +    L K  G  ++R+  + G A  R 
Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVVGFDKNRMM-VVGRAETRP 272

Query: 321 KIASDPM--NSANRRIDILVEDRQG 343
            + +D       NRR++I +   + 
Sbjct: 273 LVPNDSNEDRRRNRRVEISILQGKA 297


>gi|34498443|ref|NP_902658.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472]
 gi|34104298|gb|AAQ60657.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472]
          Length = 328

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 63/340 (18%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G KN+      +IKK    +    + G+WK+ +ADF+  LM  FLV+W++ A D +  + 
Sbjct: 3   GLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENLQQ 62

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           +           +T S G     +P  + +  +ID   +   T    D   G        
Sbjct: 63  L-----------LTTSGG-----SPLLQGNGKQIDHMGNPPGTLIPRDPIPGQAG----- 101

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                     S +      ++S  R SE+ +   +S D E  +                 
Sbjct: 102 ----------SQAASKSAVRDSDKRASEQPELPRRSYDSEADLR---------------- 135

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             K   +L ++++K            +   +    T  G+ +++ D     MF++ S+I 
Sbjct: 136 --KLAAQLSEMSQKA----------GLSSNLQTVITPYGLRVTLHDTDQQGMFERGSAIV 183

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVLM 300
            P    +LQ+IG +L      + + GHTDA+ +       A  NW LS +RA +A   +M
Sbjct: 184 EPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARLHMM 243

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + G++ D + ++ G A         P+ + NRRI++LV  
Sbjct: 244 QGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLT 283


>gi|153835783|ref|ZP_01988450.1| PomB [Vibrio harveyi HY01]
 gi|148867501|gb|EDL66863.1| PomB [Vibrio harveyi HY01]
          Length = 314

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 6   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R +  + 
Sbjct: 66  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGVSDRAGGTKRDQGKLT 125

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S H   S   D                              ++  + +  + +
Sbjct: 126 GGQSPETSTHNNQSAESD-----------------------------MQQQQSEQTSQEM 156

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 157 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A       +  D   + NRR++I +   +
Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303


>gi|259417151|ref|ZP_05741070.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346057|gb|EEW57871.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 279

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 57/310 (18%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW++NAT +  +K +  YF+P       +  G    Q    
Sbjct: 27  AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQG--- 83

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                  D    E +        IG+T +             +++ QQS+  + +     
Sbjct: 84  -------DTMFTEDVKPQ---NGIGATKENPTDASRSQGDTGVADDQQSDEAEEANFLKI 133

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E+                                                    +V+ ++
Sbjct: 134 EEALMGRGG-------------------------------------------ESMVSIDM 150

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            + ++   T  G++I + +  +  +F+  S  P      +L+ +  V A     ++I GH
Sbjct: 151 ARHIVTRVTDEGLIIELFETEDAKLFENGSERPTILMRDLLRMVARVTASVENNVAIGGH 210

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
             ++P        W LS  RA +  ++L   G+   RIS+++G+A   L  + +PM++ N
Sbjct: 211 VASTPVVIANNPVWALSHARADATRELLETGGMQAKRISRVTGYADRDL-ASKNPMSARN 269

Query: 332 RRIDILVEDR 341
            RI+I +  +
Sbjct: 270 NRINITLLRK 279


>gi|156973487|ref|YP_001444394.1| flagellar motor protein MotB [Vibrio harveyi ATCC BAA-1116]
 gi|156525081|gb|ABU70167.1| hypothetical protein VIBHAR_01177 [Vibrio harveyi ATCC BAA-1116]
          Length = 314

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 6   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R +  + 
Sbjct: 66  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLT 125

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S H   S   D                              ++  + +  + +
Sbjct: 126 GGQSPETSTHNNQSAESD-----------------------------MQQQQSEQTSQEM 156

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 157 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A       +  D   + NRR++I +   +
Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303


>gi|146341585|ref|YP_001206633.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278]
 gi|146194391|emb|CAL78416.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278]
          Length = 276

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 118/326 (36%), Gaps = 66/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76
           KKK        +   W + +AD M ++M+FF+++   +  D++  K +       FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMREAFGVQS 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +   GI +    P R           E  ++             +Q +R   N   L  
Sbjct: 61  ESRYSGIVESDGLPTRPKLKNAAHISPEETSREPSP---------EQEERQHTNGAKLKT 111

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +Q      SL                                         ++ LQD+ 
Sbjct: 112 DRQFALASASL-----------------------------------------RQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             I K ++FE T+ G+ + I+DQ    MF   S  P   T  +++K+ 
Sbjct: 131 E----------MTEISKHIMFEETKQGLNLEIVDQDGRSMFADGSKTPYDRTRRLIEKLA 180

Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   + I GHT A   P R+     + LS DRA +  Q+L + G+    I  +SG
Sbjct: 181 APLKATPLRVQITGHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A  +     DP  +ANRR+ I +  
Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265


>gi|312884943|ref|ZP_07744633.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367420|gb|EFP94982.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 328

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 134/339 (39%), Gaps = 37/339 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           ++++ A    P  L  W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MEEEEACKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P R     ID+ + +   IT+ +V+   G +++    QR 
Sbjct: 61  NRLEVKDIPKGTSVIAMEFRPGRPEPTPIDVIMQQTIDITQQTVEFHEGESDRAGGMQRD 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +                       +  +   +++    S ++EE       S+E+    +
Sbjct: 121 QGKETG-----------------GQSTETSTETSQEADSQSQEEQQQQQQESQEQQQQSE 163

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
             ++L+ +A+ I   L   +    ++    E     I I I   R    F + S+   P+
Sbjct: 164 SSEQLETVAENIKQALEREIEQGAME---VENLGQQIDIRI---RERGAFPEGSAFLQPK 217

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVS 305
              ++++I E++     V+ + GHTD  P    + R NW LS  RA S  Q + K  G  
Sbjct: 218 FRPLVRQIAELVKDIPGVVRVSGHTDNQPIDSELYRSNWDLSAQRAVSVAQEMEKVRGFK 277

Query: 306 EDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342
            DR+ ++ G A         ++   + NRR++I +   +
Sbjct: 278 HDRL-RVRGMADTEPLGPNKTEAQRALNRRVEISIMQGK 315


>gi|4322001|gb|AAD15905.1| sodium-driven polar flagellar protein [Vibrio parahaemolyticus]
          Length = 315

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 126/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D ++ +                             + +  + +
Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQ-----------------------------SKEMSQEM 157

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +    ++    E     I+I +   R    F + S+   P+   ++
Sbjct: 158 ETLMESIKKALEREIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A     + +  D   + NRR++I +   +
Sbjct: 271 RVRGMADTEPLVPNDSDENRALNRRVEISIMQGE 304


>gi|209885628|ref|YP_002289485.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
 gi|209873824|gb|ACI93620.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
          Length = 275

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 114/324 (35%), Gaps = 63/324 (19%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76
           +KK        +   W + +AD M ++M+FF+++   +  D    K +       FG   
Sbjct: 3   RKKRGDAHAGGHG--WFVTFADLMGLMMSFFVMLVAFSNQDQTKLKIVAGSMREAFGVQN 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G+ +    P R     +D    E  +                             
Sbjct: 61  DARYSGVIETDGLPTRPKLKNVDHIPPEEASNTPSPD----------------------- 97

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                      EK + K     +    +  + +   ++ LQD+ 
Sbjct: 98  ---------------------------EKEMAKLYGARIKTDREFALASASLRQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++K+ 
Sbjct: 131 E----------MTELSKHIMFEETKNGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLA 180

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
             L  S   I+I GHT A+       D + LS DRA +  Q+L   G+    I  +SG A
Sbjct: 181 APLRQSPLRIAIVGHTSANVPLRPGYDAFDLSADRANAVRQILQNEGLPATHIFSVSGKA 240

Query: 317 HHRLKIASDPMNSANRRIDILVED 340
                   DP  SANRR+ I +  
Sbjct: 241 DTEPLFPDDPTLSANRRVTITLMR 264


>gi|170727809|ref|YP_001761835.1| flagellar motor protein MotB [Shewanella woodyi ATCC 51908]
 gi|169813156|gb|ACA87740.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 322

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 130/335 (38%), Gaps = 36/335 (10%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           K   D  P     W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 3   KQKCDCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNKV 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
               +     +   +  P R     I     E IT+ + ++    T    +YQ  E++  
Sbjct: 63  EVKDIPKGTSVIALEFRPGRPEPTPI-----ETITQQTSEI----TEPVIEYQAGEDDSS 113

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             S  QQ +      +  +++      S+D E     +E         E       ++ +
Sbjct: 114 GGSQKQQGQQRGGESSATAQEQSVAQSSSDSESEAKAKE---------ESDAQAAAQENI 164

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  KK++  L+  + D     +  E+    I+I I   R    F   S    P    V+
Sbjct: 165 NEQVKKMAQELNTEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVV 218

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           +++GE+L     ++++ GHTD     N     NW LS  RA +    L+K  G    R+ 
Sbjct: 219 RRVGELLKDVPGIVTVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELIKVKGFDPQRM- 277

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           K+ G A+    +A+D     + NRR++I +E  + 
Sbjct: 278 KVVGMANSDPLVANDTSSHRARNRRVEIAIEQGKA 312


>gi|119472095|ref|ZP_01614326.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7]
 gi|119445115|gb|EAW26408.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7]
          Length = 306

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 122/325 (37%), Gaps = 37/325 (11%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I    T    +     T Q++  +  +  + + +  + S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     D   G+    S +                S E+ ++   +++  +L KKI+  
Sbjct: 115 GRQEQRGDKRGGESRSTSQEQ---------------SSEQAISAADQEQTNELVKKIAQQ 159

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + D  ++    E+    I+I I   R    F   S+   P+   ++Q IGE+L   
Sbjct: 160 LERQIIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGELLKDV 213

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              I++ GHTD     N    +NW LS  RA +    L    G  + R+  + G A  R 
Sbjct: 214 PGEITVSGHTDDFQVSNELYVNNWDLSSKRAVAVASELQTVQGFDKTRMM-VVGRAETRP 272

Query: 321 KIAS--DPMNSANRRIDILVEDRQG 343
            + +  +     NRR++I +   + 
Sbjct: 273 LVPNETNEDRRRNRRVEISILQGKA 297


>gi|148254925|ref|YP_001239510.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1]
 gi|146407098|gb|ABQ35604.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1]
          Length = 276

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 120/326 (36%), Gaps = 66/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK        +   W + +AD M +L++FF+++   +  D++  K +     + FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLLVSFFVMLVAFSTMDNNKLKVVAGSMRDAFGVQS 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +   GI +    P R           E  ++             +Q +R   N   L  
Sbjct: 61  ESRYSGIVESDGLPTRPKLKNAAHVSPEETSREPSP---------EQEERQHTNGAKLKT 111

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +Q      SL                                         ++ LQD+ 
Sbjct: 112 DRQFALASASL-----------------------------------------RQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             I K ++FE T+ G+ + I+DQ    MF   S +P   T  +++K+ 
Sbjct: 131 E----------MTEISKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLA 180

Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   + I GHT A   P R+     + LS DRA +  Q+L + G+    I  +SG
Sbjct: 181 APLKATPLRVQITGHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A  +     DP  +ANRR+ I +  
Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265


>gi|27378912|ref|NP_770441.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110]
 gi|27352062|dbj|BAC49066.1| pomB [Bradyrhizobium japonicum USDA 110]
          Length = 276

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 117/326 (35%), Gaps = 66/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK        +   W + +AD M ++M+FF+++   +  D +  K +     + FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQS 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GI +    P R     +D    E  +      +           +++ N      
Sbjct: 61  EARYAGIVESDGLPTRPRLKNVDHIQPEDASNTPTPDQEDRDRTSGAKIKVDRNF----- 115

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                                         + A   ++ LQD+ 
Sbjct: 116 ---------------------------------------------ALAAASLRQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + K ++FE T+ G+ + I+DQ    MF   S +P   T  +++K+ 
Sbjct: 131 E----------LTEMSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLVEKLA 180

Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   +SI GHT A   P R+     + LS DRA +  Q+L + G+    I  +SG
Sbjct: 181 IPLKATPLRVSIAGHTAAGFVPTRS-DYGAFDLSADRANAVRQILEREGLPASHIFAVSG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A  +     DP  +ANRR+ I +  
Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265


>gi|85715414|ref|ZP_01046396.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85697835|gb|EAQ35710.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 276

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 118/326 (36%), Gaps = 66/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK        +   W + +AD M ++M+FF+++   +  D+   K +     + FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNQKLKIVAGSMRDAFGSQT 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GI +    P R                                            
Sbjct: 61  EVRYSGIIESDGLPTRPKL----------------------------------------- 79

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            + + H     T  +    +  +       +  +  + L   S  +  A++    L +L+
Sbjct: 80  -KNAAHVPPDETSTTPTPDEQERFKTAGARLKTDREFALASASLRQ--ALQDMPELTELS 136

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K                 ++FE T+ G+ + I+DQ    MF + S  P   T +++ K+ 
Sbjct: 137 K----------------HIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIGKLA 180

Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   ISI GHT ++  P R+   D + LS DRA    Q+L + G+    I  +SG
Sbjct: 181 APLTATPFRISITGHTASNFVPMRS-DYDGFDLSADRANVVRQILEQEGLPPSHIFAVSG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            +        DP  +ANRR+ I +  
Sbjct: 240 KSDSMPLFPDDPSLAANRRVTITLMR 265


>gi|221640801|ref|YP_002527063.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131]
 gi|221161582|gb|ACM02562.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131]
          Length = 285

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 137/341 (40%), Gaps = 62/341 (18%)

Query: 2   NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
              G   Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  
Sbjct: 4   RGAGMAGQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQ 63

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           +K                  G+ D  NP    ++                D  +  T   
Sbjct: 64  RK------------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTG 105

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
               R             +   + +     ++G D  +                      
Sbjct: 106 AANDR-------------ATAERKARGEMGQEGADAAE---------------------- 130

Query: 182 KILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                  +K+L+++ K + + +   +    +++ V+   T  G++I I D  + P+F   
Sbjct: 131 -------QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGD 183

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +  P      + + + E+L  +T  I++ GH  + P   I    W +S  RA     +L 
Sbjct: 184 TDQPEAVLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLE 243

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
             G+ ++R+ ++SGFA  ++    DPM   N R+++++  R
Sbjct: 244 SEGLPDERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 283


>gi|238764369|ref|ZP_04625319.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC
           33638]
 gi|238697395|gb|EEP90162.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC
           33638]
          Length = 375

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 73/301 (24%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           +MAFFLVMW+++ +       I +YF    K  +T  +   D  +P      +       
Sbjct: 1   MMAFFLVMWLLSVSSPQELTQIAEYFRTPLKVALTHGEKSSDSTSPIPGGGDDP------ 54

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                                                          +++  ++ K  D 
Sbjct: 55  -----------------------------------------------TQQVGEVRKHIDS 67

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           E+S  ++E Y L  L ++    ++   RL+ L                   +L      G
Sbjct: 68  EES--RKEEYRLNKLREKLDQLIESDPRLRALR----------------PHLLINMMDEG 109

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-- 281
           + I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ +    
Sbjct: 110 LRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGERG 169

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
             NW LS DRA ++ + L+  G+ E ++ ++ G A           +  NRRI ILV ++
Sbjct: 170 YSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILVLNK 229

Query: 342 Q 342
           Q
Sbjct: 230 Q 230


>gi|294139895|ref|YP_003555873.1| sodium-driven polar flagellar protein PomB [Shewanella violacea
           DSS12]
 gi|293326364|dbj|BAJ01095.1| sodium-driven polar flagellar protein PomB [Shewanella violacea
           DSS12]
          Length = 325

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 130/339 (38%), Gaps = 38/339 (11%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KK   +  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKAKCECPPPGAPLWLATFADLMSLLMCFFILLLSFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P R     I++   +   +T+  ++ + G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPILEYQAGDDDSAGGVQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                +   +     +  D  K+ +K E+       +E      
Sbjct: 121 RG------------------EQRGGEASATAQEQDEAKAESKAESESKAKAEEESKAQAA 162

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            ++ + D  KK++  L+  + D  ++    E+    I+I I   R    F   S    P 
Sbjct: 163 AQENINDQVKKMAMELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQPR 216

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305
              V++++GE+L     ++++ GHTD     N     NW LS  RA +    L+K  G  
Sbjct: 217 FKPVVRRVGELLRDIPGIVTVSGHTDDMHISNELYSSNWDLSSKRAVAVAHELIKVKGFE 276

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           ++R+ K+ G A+    + +D     S NRR++I +E  +
Sbjct: 277 QNRM-KVVGMANSAPLVDNDSASNRSRNRRVEIAIEQGK 314


>gi|255264513|ref|ZP_05343855.1| OmpA/MotB [Thalassiobium sp. R2A62]
 gi|255106848|gb|EET49522.1| OmpA/MotB [Thalassiobium sp. R2A62]
          Length = 272

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 124/327 (37%), Gaps = 69/327 (21%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            IIIK+K  +    ++ G+WK+ YADF+T +MAFF++MW++               N   
Sbjct: 8   PIIIKRKKVVSGDGHHGGAWKVAYADFVTAMMAFFMLMWLL---------------NATT 52

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           +N        F    P  R S         E +    +  ++G+  Q             
Sbjct: 53  ENQRKGIADYFSPTIPISRISGGGDGAFGGESVLSKDLLPEVGNLPQP------------ 100

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                                               +    L    +++I   +  + L 
Sbjct: 101 -----------------------------------SQAQAQLLGAEQDEISFNQVMEALT 125

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L+ +        V D +++ V+   T  G++I + D  + P+F  +S +P      +  
Sbjct: 126 ALSGE------SAVIDRMLRHVITRVTDEGLIIELFDLEDQPLFIDASDVPTGVMQDLTA 179

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            I +++   +  +++ GH  + P   +   NW +S  RA +   +L ++G    ++++++
Sbjct: 180 MIAQIVGFVSNDLAVEGHVRSQPIVLLKNQNWEISHSRAQAIRLLLQQNGAYPQQMNRVT 239

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
                  +   +P++  N RI+I+V  
Sbjct: 240 AHGDREPQYK-NPLSVRNNRIEIIVLR 265


>gi|126463722|ref|YP_001044836.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559779|ref|ZP_08414101.1| MotB2 [Rhodobacter sphaeroides WS8N]
 gi|126105386|gb|ABN78064.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277491|gb|EGJ22806.1| MotB2 [Rhodobacter sphaeroides WS8N]
          Length = 278

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 134/335 (40%), Gaps = 62/335 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K    
Sbjct: 3   GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                         G+ D  NP    ++                D  +  T       R 
Sbjct: 59  --------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGAANDR- 103

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                              L    E G++   + +                         
Sbjct: 104 ---------------ATAELKASGETGQEGADAAE------------------------- 123

Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +K+L+++ K + + +   +    +++ V+   T  G++I I D  + P+F   +  P  
Sbjct: 124 -QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPEA 182

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               + + + E+L  +T  I++ GH  + P   I    W +S  RA     +L   G+  
Sbjct: 183 VLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESEGLPG 242

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +R+ ++SGFA  ++    DPM   N R+++++  R
Sbjct: 243 ERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 276


>gi|167624989|ref|YP_001675283.1| flagellar motor protein MotB [Shewanella halifaxensis HAW-EB4]
 gi|167355011|gb|ABZ77624.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 322

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 125/340 (36%), Gaps = 41/340 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KK   D  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKAKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P +     I++   +   +T+  ++ + G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPMLEFQAGEDDSAGGIQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                    S  +     +  +     +   +ST  + S                     
Sbjct: 121 RGEQRGGQASATAVEQSEAEAKAESAAQSETESTKTQASA-------------------- 160

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            + ++ +  KK++  L+  + D     +  E+    I+I I   R    F   S    P 
Sbjct: 161 -QDKINEQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPR 213

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305
              V++++GE+L     ++++ GHTD     N     NW LS  RA +    L++  G  
Sbjct: 214 FKPVVRRVGELLKDVPGIVTVSGHTDDWKISNELYSSNWDLSSKRAVAVAHELIRVKGFD 273

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
           + R+ K+ G A     + ++     + NRR++I +E  + 
Sbjct: 274 QQRM-KVVGMASSAPLVENNSSANRARNRRVEIAIEQGKA 312


>gi|85710173|ref|ZP_01041238.1| flagellar motor component [Erythrobacter sp. NAP1]
 gi|85688883|gb|EAQ28887.1| flagellar motor component [Erythrobacter sp. NAP1]
          Length = 319

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 139/333 (41%), Gaps = 60/333 (18%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
              II+KK        ++ G+WK+ YADF+T +MAFFL++W++ AT+++ ++        
Sbjct: 10  PAPIIVKKVTIAQGDGHHGGAWKVAYADFVTAMMAFFLLLWLLGATEENQRR-------- 61

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                     GI D   P                 T      +    +       L +  
Sbjct: 62  ----------GIADYFAP-----------------TLVKTRQQSAGADGMLGGSSLTDVD 94

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            Y +   Q+     ++ R +E G          ++                       +R
Sbjct: 95  NYPNAQGQTGTLSITVPRGAEGGPMEGGGDGDIET-----------------------ER 131

Query: 192 LQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L  L ++I   L+      ++ + V       GI I ++D  +  MF   ++I   +   
Sbjct: 132 LDRLREQIDEALAQRRQISHLARQVKVMRAPDGIRIDLVDDADFSMFALGTTILTQDARG 191

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+ IGEVL      + +RGHTD+ P+R+    +NW LS  RA +  Q L+ SG+  +R 
Sbjct: 192 LLEVIGEVLEAQRTPLILRGHTDSLPWRDGITANNWSLSAGRAEATRQALIASGLEANRF 251

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           ++I G A     IA +P +  NRRI +L+ ++Q
Sbjct: 252 ARIEGVADTEPLIADNPADPRNRRISLLLLEQQ 284


>gi|75675430|ref|YP_317851.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74420300|gb|ABA04499.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 276

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 116/325 (35%), Gaps = 64/325 (19%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK        +   W + +AD M ++M+FF+++   +  D+   K +     + FG   
Sbjct: 3   KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNQKLKIVAGSMRDAFGSQT 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GI +    P R                                            
Sbjct: 61  EVRYSGIIESDGLPTRPKL----------------------------------------- 79

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            + + H     T  +    +  +       +  +  + L   S         ++ LQD+ 
Sbjct: 80  -KNAAHVPPDETSTTPTPNEQERFKIAGARLKTDREFALASAS--------LRQALQDMP 130

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++++ 
Sbjct: 131 ELTE----------LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIRRLA 180

Query: 257 EVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L  +   IS+ GHT ++        D + LS DRA    Q+L + GV    I  +SG 
Sbjct: 181 APLKATPFRISVTGHTASNFIAMRSDYDGFDLSADRANVVRQILEREGVPAGHIFAVSGK 240

Query: 316 AHHRLKIASDPMNSANRRIDILVED 340
           +        DP  +ANRR+ I +  
Sbjct: 241 SDSMPLFPDDPSLAANRRVTITLMR 265


>gi|127513695|ref|YP_001094892.1| flagellar motor protein MotB [Shewanella loihica PV-4]
 gi|126638990|gb|ABO24633.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 314

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 49/339 (14%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KKV  D  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKVKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P +     I++   +   +T+ +++++ G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPTIEVQAGEDDSAGGVQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                          +    E S   +E       +K++     
Sbjct: 121 RG-----------------------------EQRGGEASSTAQEEADSEAQAKQQQQEAA 151

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            + ++ D  KK++  L+  + D     +  E+    I+I I   R    F   S    P 
Sbjct: 152 SQDQINDRVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPR 205

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVS 305
              V++++GE+L     +I++ GHTD     N     NW LS  RA +    L++  G  
Sbjct: 206 FKPVIRRVGELLKDVPGIITVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELVRVPGFD 265

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           + R+ K+ G A     + +D     + NRR++I +E  +
Sbjct: 266 QQRM-KVVGMASTAPLVPNDSAANRARNRRVEIAIEQGK 303


>gi|269962340|ref|ZP_06176690.1| flagellar motor protein [Vibrio harveyi 1DA3]
 gi|269832836|gb|EEZ86945.1| flagellar motor protein [Vibrio harveyi 1DA3]
          Length = 314

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 123/334 (36%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 6   KCDCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R +  + 
Sbjct: 66  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLT 125

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D                              ++  + +  + +
Sbjct: 126 GGQSPETSTQNNQSAESD-----------------------------MQQQQSEQTSQEM 156

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 157 DTLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A       +  D   + NRR++I +   +
Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303


>gi|323495111|ref|ZP_08100198.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546]
 gi|323310662|gb|EGA63839.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546]
          Length = 314

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 124/334 (37%), Gaps = 49/334 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L  W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 7   CKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     I  ++  P R     ID+ + +   IT+ +++   G +++    QR + ++  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGSLTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             +   S     +   D+E+ +                             + +  + L+
Sbjct: 127 GQSPDTSTQNNQNSESDNEQQQ-----------------------------SAEMSQELE 157

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L   +       +  E     I I I   R    F + S+   P+   +++
Sbjct: 158 TLMESIKKALEREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVR 211

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           +I +++     V+ + GHTD       + R NW LS  RA S  Q + K  G + +R+ +
Sbjct: 212 QIADLVKDIPGVVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRGFNHERL-R 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
           + G A       +D     S NRR++I +   + 
Sbjct: 271 VRGMADTEPLGPNDTEAQRSRNRRVEISIMQGEA 304


>gi|77464880|ref|YP_354384.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389298|gb|ABA80483.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1]
          Length = 278

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 134/335 (40%), Gaps = 62/335 (18%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q N   ++IK+K  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K    
Sbjct: 3   GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                         G+ D  NP    ++                D  +  T       R 
Sbjct: 59  --------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGAANDR- 103

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                              L    E G++   + +                         
Sbjct: 104 ---------------ATAELKASGEMGQEGADAAE------------------------- 123

Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +K+L+++ K + + +   +    +++ V+   T  G++I I D  + P+F   +  P  
Sbjct: 124 -QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPEA 182

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               + + + E+L  +T  I++ GH  + P   I    W +S  RA     +L   G+  
Sbjct: 183 VLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESEGLPG 242

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +R+ ++SGFA  ++    DPM   N R+++++  R
Sbjct: 243 ERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 276


>gi|254228602|ref|ZP_04922026.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262395023|ref|YP_003286877.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|151938781|gb|EDN57615.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262338617|gb|ACY52412.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 315

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 125/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D ++ +    S ++E                            
Sbjct: 127 GGQSPETSTQNNQSAEADMQQQQSEEMSQEMET--------------------------- 159

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ + GHTD  P    + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A     + +  D   + NRR++I +   +
Sbjct: 271 RVRGMADTEPLLPNDSDENRALNRRVEISIMQGE 304


>gi|212636367|ref|YP_002312892.1| flagellar motor protein MotB [Shewanella piezotolerans WP3]
 gi|212557851|gb|ACJ30305.1| MotB protein [Shewanella piezotolerans WP3]
          Length = 322

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 124/340 (36%), Gaps = 41/340 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KKV  D  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKVKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P R     I++   +   +T+  ++ + G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGRPESTPIEIINQQTNEMTEPMLEFQEGEDDSAGGVQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                                   ++G +   +   ++             S+       
Sbjct: 121 RG---------------------EQRGGESSSTAQEQEDAQALAKSTSESKSEASKAEAA 159

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            ++ +    KK++  L+  + D     +  E+    I+I I   R    F   S    P 
Sbjct: 160 AQEEINQQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPR 213

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305
              +++++GE+L     ++++ GHTD     N     NW LS  RA +    +++  G  
Sbjct: 214 FKPIVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVAHEMIRVKGFD 273

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
           + R+ K+ G A     + ++     + NRR++I +E  + 
Sbjct: 274 QQRL-KVVGMASSAPLVENNSQANRARNRRVEIAIEQGKA 312


>gi|37679056|ref|NP_933665.1| flagellar motor protein MotB [Vibrio vulnificus YJ016]
 gi|326423687|ref|NP_759314.2| flagellar motor rotation protein motB [Vibrio vulnificus CMCP6]
 gi|37197798|dbj|BAC93636.1| flagellar motor protein [Vibrio vulnificus YJ016]
 gi|319999044|gb|AAO08841.2| Flagellar motor rotation protein motB [Vibrio vulnificus CMCP6]
          Length = 318

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 122/334 (36%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    QR      
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------ 120

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
                                  D  K T  +      +        +++  +    K +
Sbjct: 121 -----------------------DQGKMTGGQSPETSTQTNQNTEQQQQQQQSEAMSKEM 157

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           ++ G A     + +D     + NRR++I +   +
Sbjct: 271 RVRGMADTDPLVDNDTEENRARNRRVEISIMQGE 304


>gi|299133623|ref|ZP_07026817.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298591459|gb|EFI51660.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 275

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 63/324 (19%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KKK        +   W + +AD M ++M+FF+++   +  D    K +            
Sbjct: 3   KKKRGEAHAGGHG--WFVTFADLMGLMMSFFVMLVAFSNQDQTKLKIVAGSMREAFGVAN 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ +    P R     +D    E  +                              
Sbjct: 61  ARYSGVIETDGLPTRPKLKNVDHIPPEEASNTPSPD------------------------ 96

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
                                     EK   K     +    +  + +   ++ LQD+ +
Sbjct: 97  --------------------------EKEQAKLYGARIKTDREFALASASLRQALQDMPE 130

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                        + K ++FE T+ G+ + I+DQ    MF + S  P   T ++++K+  
Sbjct: 131 ----------MTELSKHIMFEETKQGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAA 180

Query: 258 VLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L  S   ++I GHT +         D + LS DRA +  Q+L ++G+    I  +SG A
Sbjct: 181 PLRQSPLRVAIVGHTSSDFTSPRPGYDAFDLSADRANAVRQILERAGLPSTHIFSVSGKA 240

Query: 317 HHRLKIASDPMNSANRRIDILVED 340
                   DP  +ANRR+ I +  
Sbjct: 241 DSEPLFPDDPSLAANRRVTITLMR 264


>gi|258624381|ref|ZP_05719329.1| flagellar motor protein [Vibrio mimicus VM603]
 gi|258583343|gb|EEW08144.1| flagellar motor protein [Vibrio mimicus VM603]
          Length = 319

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 49/333 (14%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 4   EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ ++D + G +++    QR    
Sbjct: 64  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQRDSGK 123

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    +++ S     +   + ++ +                             A    +
Sbjct: 124 LTGGQSAESSTQDNQNTQSEMQQQQ-----------------------------AKAMSE 154

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +++ +A+ I   LS  +       +  E     I I I   R    F + S+   P+   
Sbjct: 155 QMETVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
           ++++I +++      + + GHTD       + R NW LS  RA S  Q + K  G    R
Sbjct: 209 LVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQR 268

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           + ++ G A  +    +D       NRR++I + 
Sbjct: 269 L-QVRGMADTQPLGPNDTEAQRALNRRVEISIL 300


>gi|85058002|ref|YP_453704.1| flagellar motor protein MotB [Sodalis glossinidius str.
           'morsitans']
 gi|84778522|dbj|BAE73299.1| chemotaxis protein MotB [Sodalis glossinidius str. 'morsitans']
          Length = 341

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 77/336 (22%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++    ++IK + A +   + +GSWKI YADFMT +MAFF+VMW++ AT    ++ I  Y
Sbjct: 2   KKPSPPVVIKWRRAQNAN-HYVGSWKIAYADFMTAMMAFFMVMWMLGATTPQQREQIADY 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T   G F+  N P                                      
Sbjct: 61  FKMPLKEALTH-NGKFNMGNIP-------------------------------------- 81

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                  +++ ++       R+ E  +D+ +  +    + +                ++ 
Sbjct: 82  ----LPVDAKDTDGLTRLRQRELEHQRDIQRLKNTRHRLEQM---------------LRN 122

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
             RL++L   +  TL       +  G+  E             +  PMF    +   P  
Sbjct: 123 DPRLRELQPNMRITL-------VHDGLRIEIID---------SKKRPMFATGGTAIAPYM 166

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306
             +L+ I  VL +    IS+ GHTD  P+ N      NW LS DRA ++ + L++ G++ 
Sbjct: 167 RSILRIIAPVLDNLPNRISLAGHTDNQPYLNGERGYGNWELSTDRANASRRELVEGGLAG 226

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           D+I ++ G A+          N+A RRI I++  R+
Sbjct: 227 DKILRVIGMANTMAPAGKVDDNAAQRRISIVILTRE 262


>gi|157962805|ref|YP_001502839.1| flagellar motor protein MotB [Shewanella pealeana ATCC 700345]
 gi|157847805|gb|ABV88304.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 322

 Score =  192 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 125/340 (36%), Gaps = 41/340 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + KK   D  P     W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAKKAKCDCPPAGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127
           N      +     +   +  P +     I++   +   +T+  ++ + G  +     Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPMLEFQEGEDDSAGGIQQQ 120

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                    S  +     +  +     +   +ST  + S                     
Sbjct: 121 RGEQRGGQASATAVEQSEAEAKAENAAQSDTQSTKTQASA-------------------- 160

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            + ++ +  KK++  L+  + D     +  E+    I+I I   R    F   S    P 
Sbjct: 161 -QDKINEQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPR 213

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305
              V++++GE+L     ++++ GHTD     N     NW LS  RA +    L+K  G  
Sbjct: 214 FKPVVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVGHELIKVKGFE 273

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
            +R+ K+ G A     + ++     + NRR++I +E  + 
Sbjct: 274 PNRM-KVVGMASSDPLVENNSSANRARNRRVEIAIEQGKA 312


>gi|83717140|ref|YP_438356.1| chemotaxis lafU protein [Burkholderia thailandensis E264]
 gi|167614802|ref|ZP_02383437.1| Chemotaxis lafU protein [Burkholderia thailandensis Bt4]
 gi|257141387|ref|ZP_05589649.1| chemotaxis lafU protein [Burkholderia thailandensis E264]
 gi|83650965|gb|ABC35029.1| Chemotaxis lafU protein [Burkholderia thailandensis E264]
          Length = 311

 Score =  192 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 76/338 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+E      I ++       ++ G+WK+ +ADF   LMA F+V+W++N T +  +K +  
Sbjct: 4   NKEAGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                G+       GIF+                                       QR 
Sbjct: 64  EI--AGRPFFDGGVGIFE---------------------------------------QRS 82

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +    ++QQ E  K                               P  ++E+ +   
Sbjct: 83  RKPVVAPFDAQQPERVKR----------------------------RTPGAARERTIDSL 114

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +++R   LA +I    S L  D     V       G+ I+I D     MF++ S    P+
Sbjct: 115 QQRR--ALAARIMDEASRLGMDG---NVATAINDDGVRITIHDSDKQGMFERRSDALNPQ 169

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305
            + +L  +  VL   T  + I GHTDA+ +   ++  +NW LS  RA  A Q+L   G+ 
Sbjct: 170 FVRLLTALVPVLGTVTNKMVIVGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMD 229

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             R+ +ISG       +  +P +  NRR+++L+   + 
Sbjct: 230 VQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267


>gi|254501723|ref|ZP_05113874.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222437794|gb|EEE44473.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 284

 Score =  192 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 120/324 (37%), Gaps = 53/324 (16%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
                       W + +AD M++L+ FF+++   +  D +  + +       FG    + 
Sbjct: 3   RKKPQGGGGAPDWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMREAFGVKDSSR 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI + +  P R           + I++   +L      ++ + +R +       ++ +
Sbjct: 63  KTGIIEVEGIPIRDYM--------KDISQVEQELDSDFAQERHEKRRKQGPEANTHDTME 114

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +E  K      +                                 A   ++  Q++ +  
Sbjct: 115 AEIEKPRQFATA---------------------------------AASLRQAWQEMPE-- 139

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      +   ++ E T  G+ I ++DQ    MF + S  P   T  ++ ++  VL
Sbjct: 140 --------ITEVSTNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAQMAPVL 191

Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +     I I GHT A +   + +   W LS +RA  A Q+L + GV + +   + G +  
Sbjct: 192 SRMPNRIEITGHTTAGAATVDPSYTGWDLSTERANVARQILSEYGVPDGQFYSVVGKSDT 251

Query: 319 RLKIASDPMNSANRRIDILVEDRQ 342
                +DP  +ANRR+ IL+   +
Sbjct: 252 EPLFPNDPYLAANRRVGILLMAEE 275


>gi|83648052|ref|YP_436487.1| flagellar motor protein [Hahella chejuensis KCTC 2396]
 gi|83636095|gb|ABC32062.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 328

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 125/335 (37%), Gaps = 69/335 (20%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    II+++         + G+WK+ +ADF T  M  F ++                  
Sbjct: 3   EERPPIIVRRVRKGHHA--HGGAWKVAFADFATA-MMAFFLV------------------ 41

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                                         L + E  TK   D   G       +++  +
Sbjct: 42  ------------------------------LWLSEAATKEQKDAISGYFTDPVGFEQGGS 71

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                     +           +   ++    D                + + + A   +
Sbjct: 72  PYVIDLGGSVTVTVTQDTAGKPQDQPEVRMRED----------------TIQDLAAQLEQ 115

Query: 190 KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++L  L ++I + +      N  K  +L + T  G+ I I+D+R  PMFD   S   P  
Sbjct: 116 QKLTQLMQEIMAQIEKNPKLNAFKDQLLLDITDEGLRIQIVDKRQRPMFDSGRSELQPYF 175

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++ + +A     IS+ GHTDA PF       NW LS DRA +A + L++ G+ E 
Sbjct: 176 EEILFELAKSIAKVRNKISVSGHTDAQPFLGRDNYSNWELSADRANAARRALVEGGLPEG 235

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           R++++ G A   L    DP N  NRRI ILV +++
Sbjct: 236 RMARVVGLASSVLFDEKDPYNPVNRRISILVLNKK 270


>gi|261252277|ref|ZP_05944850.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP
           102891]
 gi|260935668|gb|EEX91657.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP
           102891]
          Length = 313

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 122/337 (36%), Gaps = 49/337 (14%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L  W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 3   EEQPKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ +++   G +++    QR    
Sbjct: 63  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR---- 118

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                                    D  K T  +      +N        ++  + +  +
Sbjct: 119 -------------------------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQ 153

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L+ L + I   L   +    ++    E     I I I   R    F + S+   P+   
Sbjct: 154 ELETLMESIKKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 207

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
           ++++I +++      I + GHTD       + R NW LS  RA S  Q + K  G + +R
Sbjct: 208 LVRQIADLVKDVPGRIRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRGFNHER 267

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
           + ++ G A       +D     S NRR++I +   + 
Sbjct: 268 L-RVRGMADTEPLGPNDTEAQRSRNRRVEISIMQGEA 303


>gi|258621630|ref|ZP_05716662.1| flagellar motor protein [Vibrio mimicus VM573]
 gi|262165143|ref|ZP_06032880.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223]
 gi|258586102|gb|EEW10819.1| flagellar motor protein [Vibrio mimicus VM573]
 gi|262024859|gb|EEY43527.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223]
          Length = 319

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 49/333 (14%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 4   EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ ++D + G +++    QR    
Sbjct: 64  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQRDSGK 123

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    +++ S     +   + ++ +                             A    +
Sbjct: 124 LTGGQSAESSTQDNQNTQSEMQQQQ-----------------------------AKAMSE 154

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +++ +A+ I   LS  +       +  E     I I I   R    F + S+   P+   
Sbjct: 155 QMETVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
           ++++I +++      + + GHTD       + R NW LS  RA S  Q + K  G    R
Sbjct: 209 LVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQR 268

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           + ++ G A  +    +D       NRR++I + 
Sbjct: 269 L-QVRGMADTQPIGPNDTEAQRALNRRVEISIL 300


>gi|149184216|ref|ZP_01862534.1| OmpA/MotB [Erythrobacter sp. SD-21]
 gi|148831536|gb|EDL49969.1| OmpA/MotB [Erythrobacter sp. SD-21]
          Length = 276

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 140/337 (41%), Gaps = 65/337 (19%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G     N+   II KK+ + +  ++ G+WK+ YADF+T +MAFFL++W++ AT +D +K 
Sbjct: 3   GAATGRNEPAPIIVKKITVVEAGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEDQRK- 61

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                            G+ D   P                 T      +   ++     
Sbjct: 62  -----------------GLADYFTP-----------------TLVKTKEQSAGSDGMLGG 87

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
             L +   Y   + Q+     ++ RD+  G              KE    +  ++     
Sbjct: 88  ASLTDVDNYPHAAGQTGTNSLTIPRDATGGP-------------KEGVATIKRINSRVSK 134

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++  K L+ L ++                V    T TGI I ++D  N  MF   +++ 
Sbjct: 135 MIESDKELKRLMRQ----------------VRMIDTTTGIRIDLVDDANFSMFSLGTTVL 178

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303
             +   +L  I   LA     I++RGHTDA  +R  +R +NW LS  RA    Q L++ G
Sbjct: 179 TNDARELLVVIAAALAPEGGKITVRGHTDALRYRYPSRVNNWSLSAGRAEETRQTLIREG 238

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++++R  +I G A     I  +P +  NRRI I +ED
Sbjct: 239 INQERFRRIEGVAATEPLIGDNPSDPRNRRISISLED 275


>gi|28897464|ref|NP_797069.1| flagellar motor protein MotB [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840267|ref|ZP_01992934.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|260876424|ref|ZP_05888779.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034]
 gi|28805676|dbj|BAC58953.1| sodium-driven polar flagellar protein MotB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746069|gb|EDM57199.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|308092849|gb|EFO42544.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034]
 gi|328472526|gb|EGF43389.1| flagellar motor protein MotB [Vibrio parahaemolyticus 10329]
          Length = 315

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 124/334 (37%), Gaps = 49/334 (14%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D ++ +    S ++E                            
Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQSEEMSQEMET--------------------------- 159

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           ++ G A     + +  D   + NRR++I +   +
Sbjct: 271 RVRGMADTEPLVPNDSDENRALNRRVEISIMQGE 304


>gi|99082778|ref|YP_614932.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99039058|gb|ABF65670.1| Chemotaxis motB protein (Motility protein B) [Ruegeria sp. TM1040]
          Length = 279

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 122/310 (39%), Gaps = 57/310 (18%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL+MW++NAT +  +K +  YF+P       +  G    Q    
Sbjct: 27  AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQG--- 83

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                  D    E +        +G+T +             +++ QQS+  + +  R  
Sbjct: 84  -------DTMFTEDVKPQ---NGVGATKENPTDASRAQGETGVADDQQSDAAEEASFRQI 133

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E+                                                    +V+ ++
Sbjct: 134 EEALMGRGG-------------------------------------------ESMVSIDM 150

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            + ++   T  G++I + +  +  +F+  S  P      +L+ +  V +     ++I GH
Sbjct: 151 ARHIVTRVTDEGLIIELFETEDATLFEADSERPTVLMRDLLRMVARVTSGVENNVAIGGH 210

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
             ++P        W LS  RA    ++L   G+S  RIS+++GFA   L  + +PM+  N
Sbjct: 211 VASTPVVIANNPVWALSHARADQTRELLQAGGMSAKRISRVTGFADRDL-ASQNPMSERN 269

Query: 332 RRIDILVEDR 341
            RI I +  +
Sbjct: 270 NRITITLLRK 279


>gi|118588413|ref|ZP_01545822.1| probable chemotaxis protein [Stappia aggregata IAM 12614]
 gi|118439119|gb|EAV45751.1| probable chemotaxis protein [Stappia aggregata IAM 12614]
          Length = 285

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 122/315 (38%), Gaps = 53/315 (16%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88
              W + +AD M++L+ FF+++   +  D +  + +       FG    +   GI + + 
Sbjct: 13  APDWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMREAFGVKDSSRKTGIIEVEG 72

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P R           + I++   ++    + ++ + +R +       ++ +++  K    
Sbjct: 73  IPIRDYM--------KDISQVEQEMDSDFSQERHEKRRKQGPEANTHDTLEADIEKPRQF 124

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             +                                 A   ++  Q++ +           
Sbjct: 125 ATA---------------------------------AASLRQAWQEMPE----------I 141

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
             I   ++ E T  G+ I ++DQ    MF + S  P   T  ++ K+  VL+     I I
Sbjct: 142 TEISSNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAKMAPVLSQMPNRIEI 201

Query: 269 RGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GHT A     + +   W LS +RA  A Q+L + GV +++   + G A       +DP 
Sbjct: 202 TGHTTAGRQSIDPSYTGWELSSERANIARQILSEYGVPDNQFYSVVGKADTEPLFPNDPY 261

Query: 328 NSANRRIDILVEDRQ 342
            +ANRRI IL++  +
Sbjct: 262 LAANRRIGILLKAEE 276


>gi|85706141|ref|ZP_01037236.1| putative chemotaxis MotB protein [Roseovarius sp. 217]
 gi|85669305|gb|EAQ24171.1| putative chemotaxis MotB protein [Roseovarius sp. 217]
          Length = 287

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 54/332 (16%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  Y
Sbjct: 4   HSNAAPVIIKRKKIVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                        N+I    D     +SV  +           +  
Sbjct: 64  FSP--------------------SVPINRISGGGDGAFGGDSVFSEDTLVQNGTGASQRL 103

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 +N +     K SL+  ++                               +  + 
Sbjct: 104 ATSNRQANGENVAIEKGSLSAGAQ-------------------------------VEAEA 132

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              ++D+ +    +   LVAD  ++ ++   T   ++I I D     +F+    +  P  
Sbjct: 133 FAAIEDMLR--GGSGESLVADETLRHIVTRLTDEELVIEIFDLPQAQLFEVDGVVATPLL 190

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   +          +++ GHT A P        W LS  RA    Q+L   G+S  R
Sbjct: 191 KDLTALLASAANLVVNDVALAGHTRAQPITLARNPVWDLSSSRANQFRQMLEAEGLSAKR 250

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + +I+G A     +  DPM+  N R+++++  
Sbjct: 251 MRRITGHADRTSAV-LDPMDLRNNRLEMILLR 281


>gi|315122280|ref|YP_004062769.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495682|gb|ADR52281.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 158

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/158 (74%), Positives = 137/158 (86%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           MKRKKR+QDL +KIS+TLSGLVA++IVKG+LF+TT  G+LISIID  NTPMFDKSSSIPL
Sbjct: 1   MKRKKRMQDLEQKISTTLSGLVANHIVKGILFKTTPNGMLISIIDHNNTPMFDKSSSIPL 60

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           PE I++LQKIGE L+ S E ISI GHTDASPFR+   DNW+LSLDRAYS YQ+LMKSG+S
Sbjct: 61  PEMILILQKIGEALSQSNENISIEGHTDASPFRHSTGDNWKLSLDRAYSTYQILMKSGIS 120

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E RISKISG A H  KI+SDPMN+ANRRI+ILV+D +G
Sbjct: 121 EKRISKISGLAQHNPKISSDPMNAANRRIEILVQDGEG 158


>gi|315180895|gb|ADT87809.1| sodium-driven polar flagellar protein [Vibrio furnissii NCTC 11218]
          Length = 320

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 47/336 (13%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 3   EQKCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ +++   G  ++    QR    
Sbjct: 63  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQRDAGQ 122

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    + + +     +                               + +++  +    +
Sbjct: 123 LTGGQSPETATQDNQNTET---------------------------EMQQQQAQSQSMSE 155

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ + + I   L   +       +  E     I+I I   R    F + S+   P+   
Sbjct: 156 EMETVLESIKKALQREIEQGA---IEVENLGQQIVIRI---REKGAFPEGSAFLQPKFRP 209

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
           ++++I +++     ++ + GHTD       + R NW LS  RA S  Q + K  G +  R
Sbjct: 210 LVRQIADLVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVKGFNHQR 269

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + ++ G A       +D     S NRR++I +   +
Sbjct: 270 L-QVRGMADTDPLGPNDTEAQRSRNRRVEISIMQGE 304


>gi|149203099|ref|ZP_01880070.1| OmpA/MotB [Roseovarius sp. TM1035]
 gi|149143645|gb|EDM31681.1| OmpA/MotB [Roseovarius sp. TM1035]
          Length = 287

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 54/334 (16%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N + +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  Y
Sbjct: 4   QSNAKPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P                 P  R+S         E +      L+ GS   +      +
Sbjct: 64  FSP---------------TVPISRTSGGGDGAFGGESVFSQETLLQSGSGASQPLATSSQ 108

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                +                  +G +L    + +          L   S E       
Sbjct: 109 QVRGEMG---------------LVEGGNLSADQEADAQAFSTIEAMLTGRSGES------ 147

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                            +V+D++++ ++   T  G++I I +     +F+   + P    
Sbjct: 148 -----------------MVSDDLLRHIVTRVTDEGLVIEIFELPGALLFEPDQTSPTRLL 190

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   +           ++ GHT A P   +    W LS  R     Q L  +G++  R
Sbjct: 191 QDLSMLLASAANLVINDAALAGHTRARPITLVRNPVWDLSTARVDQFRQRLEDAGLAAKR 250

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           I +I+G A     + SDPM+  N R+++++   +
Sbjct: 251 IRRIAGHADRSPAV-SDPMDLRNNRLELILLRSE 283


>gi|39935079|ref|NP_947355.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris
           CGA009]
 gi|192290612|ref|YP_001991217.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|39648930|emb|CAE27451.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris
           CGA009]
 gi|192284361|gb|ACF00742.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 274

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 122/326 (37%), Gaps = 68/326 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76
           KKK A +    +   W + +AD M +LM+FF+++   +  D      +       FG   
Sbjct: 3   KKKKAEEHAGGHG--WFVTFADLMGLLMSFFVMLVAFSTQDKAKLMIVAGSMREAFGVQN 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GI +    P R                                            
Sbjct: 61  DARYSGIIENDGLPTRGKV----------------------------------------- 79

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            + +EH    L+       ++ +   +    ++E            + +   ++ LQ++ 
Sbjct: 80  -KNTEHVNPELSTAKPSPGEVTRDEGINTKEDREFA----------LASASLRQALQNMP 128

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + K ++FE T+ G+ + I+DQ    MF   S +P   T ++LQ++ 
Sbjct: 129 E----------ISELSKNIMFEETKQGLNLEIMDQDGRSMFADGSKVPFERTRLLLQRLA 178

Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L  +   ++I GHT +   P R+   + W LS DRA S  Q+L + G+    I  ++G
Sbjct: 179 VPLRATPLRVTIVGHTSSGLMPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTG 237

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A  +     DP  +ANRR+ I +  
Sbjct: 238 KADSQPLFPDDPSIAANRRVTITLMR 263


>gi|260767264|ref|ZP_05876205.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260617772|gb|EEX42950.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 320

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 47/336 (13%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 3   EQKCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ +++   G  ++    QR    
Sbjct: 63  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQRDAGQ 122

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    + + +     +                               + +++  +    +
Sbjct: 123 LTGGQSPETATQDNQNTET---------------------------EMQQQQAQSQSMSE 155

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ + + I   L   +       +  E     I+I I   R    F + S+   P+   
Sbjct: 156 EMETVLESIKKALQREIEQGA---IEVENLGQQIVIRI---REKGAFPEGSAFLQPKFRP 209

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
           ++++I +++     ++ + GHTD       + R NW LS  RA S  Q + K  G +  R
Sbjct: 210 LVRQIADLVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVKGFNHQR 269

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + ++ G A       +D     S NRR++I +   +
Sbjct: 270 L-QVRGMADTDPLGPNDTEAQRSRNRRVEISIMQGE 304


>gi|163742566|ref|ZP_02149952.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10]
 gi|161384151|gb|EDQ08534.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10]
          Length = 278

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFF++MW++NAT +  +K                  G+ D  +P  
Sbjct: 27  AWKVAYADFVTAMMAFFMLMWLLNATTEKQRK------------------GLADYFSP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                                  +  +S         +S+  + 
Sbjct: 67  ------------------------------------SIPLSRVSGGGNGAFNGDSMFTEE 90

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210
            K ++   ++D+  +  ++          +   A    ++ + L +++       +V+  
Sbjct: 91  IKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD--EQFRALEEQLKGRGGESMVSIE 148

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + + ++   T  G+++ + D   +P+F + ++ P      +++ +  V       I+I G
Sbjct: 149 MAQHIITRVTDEGLVVELFDTEESPLFKEGTAEPTLLFRDIVKMVSRVTGVVENNIAIGG 208

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           H  +          W LS  RA +   +L   G    R+ +++G A  +L   S+PM++ 
Sbjct: 209 HIRSHAVVVANNPVWELSHARADATRVMLESGGTKSKRMHRVTGHADRKL-TDSNPMSAR 267

Query: 331 NRRIDILVEDR 341
           N R++I++  +
Sbjct: 268 NNRVEIILLRK 278


>gi|316934820|ref|YP_004109802.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315602534|gb|ADU45069.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 273

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 119/323 (36%), Gaps = 66/323 (20%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +  +    W + +AD M +L+AFF+++   +  D    K +       FG      
Sbjct: 3   KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDTQKLKIVAGSMREAFGVQSDAR 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI +    P R                                             + 
Sbjct: 63  YSGIIENDGLPTRGKV------------------------------------------KN 80

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +EH    L+       ++ +   +    ++E            + +   ++ LQ++ +  
Sbjct: 81  TEHVNPELSTAKPSPGEVTRDEGINTKEDREFA----------LASASLRQALQNMPE-- 128

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K ++FE T+ G+ + I+DQ    MF   S +P   T ++LQ++   L
Sbjct: 129 --------IAELSKNIMFEETKQGLNLEIMDQDGRSMFADGSRVPFERTRLLLQRLAVPL 180

Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
             +   ISI GHT +   P R+   + W LS DRA S  Q+L + G+    I  ++G + 
Sbjct: 181 RATPLRISIVGHTSSGLLPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKSD 239

Query: 318 HRLKIASDPMNSANRRIDILVED 340
            +     DP  +ANRR+ I +  
Sbjct: 240 SQPLFPEDPSIAANRRVTITLMR 262


>gi|86147426|ref|ZP_01065738.1| flagellar motor protein [Vibrio sp. MED222]
 gi|85834719|gb|EAQ52865.1| flagellar motor protein [Vibrio sp. MED222]
          Length = 315

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 49/333 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L  W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 7   CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     I  ++  P R     ID+ + +   IT+ +++   G + +     R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             +++ S H                             N       +++  A ++ + ++
Sbjct: 127 GKSAEVSAH-----------------------------NNQNSESDQQQQQAQEQSQEME 157

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L   +    ++    E     I+I I   R    F   S+   P+   +++
Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           ++ E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ +
Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G A       +D     S NRR++I +   +
Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303


>gi|163738038|ref|ZP_02145454.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|161388654|gb|EDQ13007.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 278

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFF++MW++NAT +  +K                  G+ D  +P  
Sbjct: 27  AWKVAYADFVTAMMAFFMLMWLLNATTEKQRK------------------GLADYFSP-- 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
                                                  +  +S         +S+  + 
Sbjct: 67  ------------------------------------SIPLSRVSGGGNGAFNGDSMFTEE 90

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210
            K ++   ++D+  +  ++          +   A    ++ + L +++       +V+  
Sbjct: 91  IKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD--EQFRALEEQLKGRGGESMVSIE 148

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           + + ++   T  G+++ + D   +P+F + ++ P      +++ +  V       I+I G
Sbjct: 149 MAQHIITRVTDEGLVVELFDTEESPLFKEGTAEPTLLFRDIVKMVSRVTGVVENNIAIGG 208

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           H  +          W LS  RA +   +L   G    R+ +++G A  +L   S+PM++ 
Sbjct: 209 HIRSHAVVVANNPVWELSHARADATRVMLESGGTRSKRMHRVTGHADRKL-TDSNPMSAR 267

Query: 331 NRRIDILVEDR 341
           N R++I++  +
Sbjct: 268 NNRVEIILLRK 278


>gi|91976556|ref|YP_569215.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91683012|gb|ABE39314.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 273

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 115/322 (35%), Gaps = 64/322 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +  +    W + +AD M +L+AFF+++   +  D D  K +       FG    + 
Sbjct: 3   KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDKDKLKIVAGSMREAFGVQNDSR 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI +    P R                                             + 
Sbjct: 63  YSGIIENDGLPTRGKV------------------------------------------KN 80

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +EH    L+       ++ +   +     +E            + +   ++ LQDL +  
Sbjct: 81  TEHVNPELSTSKPAPGEVTRDEGVNTKEEREFA----------LASASLRQALQDLPE-- 128

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+FE T+ G+ + I+DQ    MF   S  P   T ++LQ++   L
Sbjct: 129 --------ISELSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRLLLQRLAAPL 180

Query: 260 AHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             +   +SI GHT A         + + LS DRA    Q+L + G+    I  ++G A  
Sbjct: 181 RATPLRVSIVGHTSAGSVSQRSDYNGFDLSADRANVVRQILEREGLPVSHIFAVTGKADT 240

Query: 319 RLKIASDPMNSANRRIDILVED 340
           +     DP  +ANRR+ I +  
Sbjct: 241 QPLFPEDPSIAANRRVTITLMR 262


>gi|119947181|ref|YP_944861.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37]
 gi|119865785|gb|ABM05262.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37]
          Length = 306

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 112/323 (34%), Gaps = 72/323 (22%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                   +  +WK+ +AD M  LM  FLV+W +   D   K+ I  YF           
Sbjct: 14  GRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYFR---------- 63

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
                                              G  +  ++    + N         S
Sbjct: 64  ----------------------------------TGQMSTPQERMFAQKNSLVSIPLMSS 89

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               N+   D+     +    + ++ +                      KRL DL ++I 
Sbjct: 90  AKDNNTDINDTVNNALIQGEYNTQEELQFLM------------------KRLDDLVEEID 131

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           +             +L E    G+ I +    +  M+++  +   P    +L +   V  
Sbjct: 132 A----------SNNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYEDMLLEFSSVFN 181

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                + I GHTD++P+      NW LS  RA SA +++   G+ +  I+++ G A+ + 
Sbjct: 182 AIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTKP 241

Query: 321 KIASDPMNSANRRIDILVEDRQG 343
               + ++S NRR+++++  RQ 
Sbjct: 242 IDKQNELSSINRRVEVIILTRQA 264


>gi|218710365|ref|YP_002417986.1| flagellar motor protein MotB [Vibrio splendidus LGP32]
 gi|218323384|emb|CAV19561.1| Flagellar motor protein [Vibrio splendidus LGP32]
          Length = 315

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 49/333 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L  W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 7   CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     I  ++  P R     ID+ + +   IT+ +++   G + +     R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             +++ S H                             N       +++  A ++ + ++
Sbjct: 127 GKSAEVSAH-----------------------------NNQNSESDQQQQQAQEQSQEME 157

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L   +    ++    E     I+I I   R    F   S+   P+   +++
Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           ++ E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ +
Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G A       +D     S NRR++I +   +
Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303


>gi|84394351|ref|ZP_00993072.1| flagellar motor protein [Vibrio splendidus 12B01]
 gi|84375010|gb|EAP91936.1| flagellar motor protein [Vibrio splendidus 12B01]
          Length = 315

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 121/333 (36%), Gaps = 49/333 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L  W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 7   CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     I  ++  P R     ID+ + +   IT+ +++   G + +     R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             + + S H                             +       +++  A  + + ++
Sbjct: 127 GKSPEVSTH-----------------------------DNQNSESDQQQQQAEAQSQEME 157

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L   +    ++    E     I+I I   R    F   S+   P+   +++
Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           ++ E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ +
Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G A       +D     S NRR++I +   +
Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303


>gi|78485775|ref|YP_391700.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364061|gb|ABB42026.1| Flagellar motor protein MotB [Thiomicrospira crunogena XCL-2]
          Length = 296

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 118/336 (35%), Gaps = 71/336 (21%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             +Q IIIK+        +  G+W                            K A   + 
Sbjct: 2   SEEQSIIIKRLTKCPHCAH-GGAW----------------------------KVAFADFM 32

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                  +                      L I   +    +             +    
Sbjct: 33  TAAMAFFLM---------------------LWILSGVNDEEMKAMAEYFRDPTVIEASPQ 71

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +     + QS      +    +  K   ++ D E                      + K
Sbjct: 72  VLVPSKEAGQSSDSMIDMGGFKDTPKGSIENEDGE-------------------AKAQEK 112

Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            +++DL ++I   +S   + + +   +  E T  G+ + ++D R  PMF     +P    
Sbjct: 113 AQMEDLKRQIEQKISENPITNELKNQLKIEVTPNGLQVQVLDDRKRPMFGSGVDLPKDYA 172

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L+++G VLA +   ISI GHTD+S +  N    NW LS DRA +A ++L+  GV E 
Sbjct: 173 AKLLKEVGSVLAQTNNRISIAGHTDSSGYHSNAEYTNWELSADRANAARRLLLDGGVGEK 232

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +I+++ G +        +P N  NRRI I+V +++ 
Sbjct: 233 KIAQVVGLSDTVPFDKENPYNPRNRRISIIVLNKEA 268


>gi|148976605|ref|ZP_01813292.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3]
 gi|145963956|gb|EDK29214.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3]
          Length = 315

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 121/333 (36%), Gaps = 49/333 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L  W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 7   CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     I  ++  P R     ID+ + +   IT+ +++   G + +     R +  +  
Sbjct: 67  DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             + + S H                             +       +++  A  + + ++
Sbjct: 127 GKSPEVSTH-----------------------------DNQNSESDQQQQQAEAQSQEME 157

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L + I   L   +    ++    E     I+I I   R    F   S+   P+   +++
Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           ++ E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ +
Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G A       +D     S NRR++I +   +
Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303


>gi|224825768|ref|ZP_03698872.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224601992|gb|EEG08171.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 325

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 129/338 (38%), Gaps = 60/338 (17%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           DK +E    +I KK     D   + G+WK+ +ADF+  LM  FLVMW++ + + +T   +
Sbjct: 4   DKKKEGTAAVI-KKVSRRQDDGGHSGAWKVAFADFVLALMCLFLVMWLLASREQETMAQL 62

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            +                    +P    +Q++I+     H +    +L  G    +    
Sbjct: 63  LR----------------NGGGSPLAEGTQSRIEHQGTPHGSLIPRELVPGQQATES--- 103

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                                      +     KS+    +++      L          
Sbjct: 104 ---------------------------RPNSQVKSSAQPSALDDGNGAKLRRRYDSAADL 136

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            K  K + DL+          V   +   +    T  G+ + + D     MF++ S++  
Sbjct: 137 QKLAKMMSDLS----------VEAGLAGNIQTVITPYGLRVMLHDTDKQGMFERGSAVIN 186

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKS 302
                +LQK+G++ AH    + + GHTD+  ++        NW LS +RA +A   L+  
Sbjct: 187 ERFKHLLQKMGQMFAHIDNQLLLVGHTDSLQYKGQDYAAFSNWSLSSNRAMAARMQLLLG 246

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           G++ + I ++ G A      A  P  + NRRI++LV  
Sbjct: 247 GMASNGILQVVGMADRAPLDARHPDAALNRRIELLVLT 284


>gi|90423604|ref|YP_531974.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90105618|gb|ABD87655.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 275

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 115/323 (35%), Gaps = 64/323 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +  +    W + +AD M +L+AFF+++   +  D    K +       FG    + 
Sbjct: 3   KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDTKKLKIVAGSMREAFGVQSDSR 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+ +                                           + I      + 
Sbjct: 63  YSGVLE------------------------------------------TDGIPTRGKVKN 80

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
             H       ++    +   S         E  + L         +   ++ LQDL +  
Sbjct: 81  KAHVAIDDASNTPNPDEAGDSKAAGAQTQAEREFAL--------ASASLRQALQDLPE-- 130

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K ++FE T+ G+ + IIDQ    MF   S +P   T +++QK+   L
Sbjct: 131 --------LTELSKNIMFEETKEGLNLEIIDQDGRSMFADGSKVPFERTRLLIQKLAAPL 182

Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
             +   +SI GHT A   P R    + + LS DRA +  Q+L + G+    +  +SG A 
Sbjct: 183 RATPLRVSIVGHTSAGLMPGRT-DYNAFDLSSDRANAVRQILEREGLPTSHVFAVSGKAD 241

Query: 318 HRLKIASDPMNSANRRIDILVED 340
            +     DPM +ANRR+ I +  
Sbjct: 242 SQPLFPDDPMLAANRRVTITLMR 264


>gi|238785460|ref|ZP_04629444.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC
           43970]
 gi|238713615|gb|EEQ05643.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC
           43970]
          Length = 380

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 73/304 (24%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++ +       I  YF    K  +T+        +P      +    
Sbjct: 1   MTAMMAFFLVMWLLSVSSPQQLTQIADYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                                                             +++  ++ K 
Sbjct: 58  --------------------------------------------------TQQVGEVRKH 67

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D E+S  ++E Y L  L ++    ++   RL+ L   +   L  ++ + +         
Sbjct: 68  IDSEES--RKEEYRLNKLREKLDQLIESDPRLRALRPHL---LINMMEEGL--------- 113

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
                I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N 
Sbjct: 114 ----RIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANG 169

Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA ++ + L+  G+ E ++ ++ G A           +  NRRI ILV
Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILV 229

Query: 339 EDRQ 342
            ++Q
Sbjct: 230 LNKQ 233


>gi|289207762|ref|YP_003459828.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943393|gb|ADC71092.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 325

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 142/335 (42%), Gaps = 58/335 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q II+KKKV      ++ GSWK+ +ADF   +MAFFL++W++ A DD+ +  I +Y
Sbjct: 4   EDKTQPIIVKKKVVK--GGHHGGSWKVAFADFAIAMMAFFLLLWLLAALDDEQRAGISEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F                         QN      +      +     G       ++ + 
Sbjct: 62  F-------------------------QNPSAFVGEAAAPGQAPGDGTGVDPSLIDFEGMP 96

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I         E     +  D E   +L ++ D E          L  L +    A+++
Sbjct: 97  ELI------HDPEAMGAPMGLDDEALDELAEARDREA---------LEVLQEALEEALEQ 141

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            + L+    ++                L + T  G+ I IID+ N PMFD +SS PLP  
Sbjct: 142 SQALEPYKDQL----------------LLDITPEGLRIQIIDRENRPMFDTASSTPLPHA 185

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+++  ++      ISI GHTDA P       NW LS DRA +A + L+  G    +
Sbjct: 186 DAILRELASLINKVPNRISITGHTDARPLLRPDYSNWELSADRANAARRALIAGGAESGQ 245

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++++ G A        DP  + NRRI I+V +++ 
Sbjct: 246 VARVVGLADSVPFTRDDPEAAINRRISIIVLNQEA 280


>gi|146312113|ref|YP_001177187.1| flagellar motor protein MotB [Enterobacter sp. 638]
 gi|145318989|gb|ABP61136.1| OmpA/MotB domain protein [Enterobacter sp. 638]
          Length = 309

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 74/340 (21%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +I+KK+        + GSWKI YADFMT                      + 
Sbjct: 2   KNQSHP-IVIVKKRKHKGHGHGSHGSWKIAYADFMTA---------------------MM 39

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            +F       +++ K +              I        +++ +        Q+K   +
Sbjct: 40  AFFLVMWLVSISSPKELIQIAEYFRTPLATAITGGPRISNSESPIPGGGDDFTQQKGEVK 99

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            E NI                                                 +++   
Sbjct: 100 KEPNI-------------------------------------------------DELKKR 110

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             + RL+ L   +   +        ++  +  +  + G+ I IID +N PMF   S+   
Sbjct: 111 MEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVE 170

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
                +L+ I  VL      IS+ GHTD   + N      NW LS DRA ++ + L+  G
Sbjct: 171 YYMRDILRGIAPVLNGIPNHISLSGHTDDFQYANGEKGYSNWELSADRANASRRELVAGG 230

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           + + ++ ++ G +         P ++ NRRI +LV ++Q 
Sbjct: 231 LDDGKVLRVVGMSSSMRVTDRGPEDAVNRRISLLVLNQQA 270


>gi|332162880|ref|YP_004299457.1| flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604276|emb|CBY25774.1| flagellar motor rotation protein MotB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667110|gb|ADZ43754.1| Flagellar motor protein MotB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863328|emb|CBX73451.1| putative protein mbhA [Yersinia enterocolitica W22703]
          Length = 272

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 63/310 (20%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94
           + +ADF   +MA F+V+WI+    ++ ++ I    N          K IF +Q+     S
Sbjct: 1   MAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPS 51

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
           ++K                                                    DS  G
Sbjct: 52  KSK---------------------------------------------SGGGKFSDSVDG 66

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            +  K T    ++   E     P    + L  +  + +++L + I+   S   A + +K 
Sbjct: 67  HEQAKETKSNLAVEVPE-----PEQSLEELVDRSGREMEELTRIITQITSAYDAQSNLK- 120

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
              E    G+ I I D ++  MF +SS++  P    +L ++          I I GHTDA
Sbjct: 121 --MEVVPQGLRILIQDDKHRDMFQRSSAVLTPFFSRLLAELAPAFNEMDNKIIITGHTDA 178

Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           S +R+ +  +NW LS +RA  A++ L+K G+ +DR+ +I+  A   L  +++P+ + NRR
Sbjct: 179 SRYRDQVLYNNWNLSGERALMAHKALVKGGLDDDRVLQINAMAEQMLLDSAEPLAAKNRR 238

Query: 334 IDILVEDRQG 343
           I+I+V  +  
Sbjct: 239 IEIMVLTKTA 248


>gi|183598599|ref|ZP_02960092.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827]
 gi|188020776|gb|EDU58816.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827]
          Length = 317

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST- 202
           K ++   ++ G          K I   +   LP       +  +   R + L + +    
Sbjct: 67  KTAINSGTKSGDATNPIPGGGKDIVFRDGDILPEP--NNKIEDQSNYRFEKLKQSLEQAI 124

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L     + +   +L +    G+ I I+D  N PMF   S+   P    +L+ I  +L   
Sbjct: 125 LKDPRLNELKPHLLIDMIDDGLRIQIVDSENRPMFMVGSAYVEPHMRDILRAIAPLLNDV 184

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ISI GHTD  P+ N A  +NW LS DRA ++ + L+  G+++D+I ++ G A     
Sbjct: 185 PNKISISGHTDDLPYANGANYNNWELSADRANASRRELIAGGLNQDKILRVVGMASSIHL 244

Query: 322 IASDPMNSANRRIDILVED 340
             ++ +   NRRI I+V +
Sbjct: 245 DKNNGLAPVNRRISIIVLN 263



 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 54/126 (42%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N+  II  KK        + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF 
Sbjct: 4   NNAHIIRVKKRVASHQNGHGGSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  + +     D  NP     ++ +    D     N+      +   +K  Q LE  
Sbjct: 64  TPLKTAINSGTKSGDATNPIPGGGKDIVFRDGDILPEPNNKIEDQSNYRFEKLKQSLEQA 123

Query: 131 IFYLSN 136
           I     
Sbjct: 124 ILKDPR 129


>gi|114563951|ref|YP_751465.1| flagellar motor protein MotB [Shewanella frigidimarina NCIMB 400]
 gi|114335244|gb|ABI72626.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 308

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 36/328 (10%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   D  P     W   +AD M++LM FF+++   +  D    K I              
Sbjct: 3   KAKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSM---------- 52

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K  F  QN  E     K    I         D        ++  +  +  I Y +  + 
Sbjct: 53  -KYAFGVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTQPTIEYQAGEED 111

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S       + +   G     +    +++ K+              A   ++ + D  KK+
Sbjct: 112 SAGGTQKQSGEQRGGNAAATAQQEAEAVKKD--------------AASSQENINDQVKKM 157

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L+  + D     +  E+    I+I I   R    F   S    P+   +++ IGE+L
Sbjct: 158 AEKLNEEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPKFKPIVRSIGELL 211

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I++ GHTD +   N     NW LS  RA +    L + SG  E R+ K+ G A 
Sbjct: 212 KDVPGIITVSGHTDGADINNELYSSNWELSSQRAVAVAHELRRVSGFDESRM-KVVGEAS 270

Query: 318 HRLKIASDPMN--SANRRIDILVEDRQG 343
           +R  +A+D     + NRR++I +E  + 
Sbjct: 271 NRPLVANDSNENQARNRRVEISIEQGKA 298


>gi|296282270|ref|ZP_06860268.1| OmpA/MotB domain-containing protein [Citromicrobium bathyomarinum
           JL354]
          Length = 273

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 66/332 (19%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N   II+KK V + +  ++ G+WK+ YADF+T +MAFFL+MW++ AT +D ++      
Sbjct: 7   DNLPPIIVKK-VTVVEGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEDQRR------ 59

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                       G+ D   P                 T   V       N       L +
Sbjct: 60  ------------GLADYFTP-----------------TLVKVKDSGAGANGLLSGASLTD 90

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
              Y +   Q+ +   ++ RD+  G              +E    +  ++      +++ 
Sbjct: 91  VDDYPNRQGQTGNKGLTVPRDAMGGP-------------REAARMIERITSRTKDRLEKD 137

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            RL  L  +I                    T  G+ I ++D  +  MF+  +++   +  
Sbjct: 138 PRLAKLMSQIK----------------MVDTTEGVRIDLVDDADFSMFNLGTTVLTRDAA 181

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  I + +      I +RGHTD+  ++N  R +NW LS  RA +  Q LM  G+ +D 
Sbjct: 182 ELLAAIAQAIEPEKREIIVRGHTDSLKWKNPGRINNWSLSAGRAEATRQTLMNEGIPDDS 241

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             +I G A   L +  DP +  NRRI I++ +
Sbjct: 242 FRRIEGVADTELLVKDDPADPRNRRISIVLAN 273


>gi|261344163|ref|ZP_05971807.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541]
 gi|282567758|gb|EFB73293.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541]
          Length = 306

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 182 KILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            I++     R + L + +    L     + +   +L +    G+ I I+D  N PMF   
Sbjct: 103 NIISGDANYRFEKLKENLEQAILQDPRLNELKPHLLIDMINDGLRIQIVDSANRPMFKVG 162

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S+I  P    +L+ I  +L      ISI GHTD  P+ +     NW LS DRA ++ + L
Sbjct: 163 SAIVEPYMRDILRAIAPLLNDVPNRISISGHTDDLPYASEAYYSNWELSSDRANASRREL 222

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +  G+ E +I ++ G A        + +   NRRI I+V +
Sbjct: 223 IMGGMEEQKILRVVGMASSIHLDKENGLAPINRRISIIVLN 263


>gi|238919361|ref|YP_002932876.1| OmpA family protein [Edwardsiella ictaluri 93-146]
 gi|238868930|gb|ACR68641.1| OmpA family protein [Edwardsiella ictaluri 93-146]
          Length = 270

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +   +S +     G D+ +    E  + K      P    +++   + ++RL+ L    
Sbjct: 74  GQRSSDSFSPIPGGGDDVTRK---EGEVRKFAADPDPKTRTDQMRLKRLRERLEQL---- 126

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              LS      +   ++   T  G+ I I+D +  PMF   S+   P    +L+ I  +L
Sbjct: 127 --ILSDPRLKLLRPHLMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIAPIL 184

Query: 260 AHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                 IS+ GHTD  P+ N      NW LS DRA ++ + LM  G+  ++I ++ G A 
Sbjct: 185 NELPNKISLSGHTDDLPYANGEKGYSNWELSADRANASRRELMAGGLDSNKILRVVGMAD 244

Query: 318 HRLKIASDPMNSANRRIDILVEDR 341
                      + NRRI ILV ++
Sbjct: 245 TMNLHNMAGNAAENRRISILVLNK 268



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 2/190 (1%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
               I++KKK +     ++ GSWKI YADFMT +MAFFLVMW++          I +YF 
Sbjct: 5   KQPVILVKKKRSSHAQASHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  ++  +   D  +P      +      +        D K  +   + +  R    
Sbjct: 65  TPLKVALSGGQRSSDSFSPIPGGGDDVTRKEGEVRKFAADPDPKTRTDQMRLKRLRERLE 124

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              LS+ +      + +   +++G  +      ++ + K  +  + P  +  + A+    
Sbjct: 125 QLILSDPRLKLLRPHLMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIA--P 182

Query: 191 RLQDLAKKIS 200
            L +L  KIS
Sbjct: 183 ILNELPNKIS 192


>gi|212709470|ref|ZP_03317598.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM
           30120]
 gi|212687808|gb|EEB47336.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM
           30120]
          Length = 312

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 182 KILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            I++     R + L + +    L     + +   +L +    G+ I I+D  N PMF   
Sbjct: 103 NIISGDANYRFEKLKENLEQAILQDPRLNELKPHLLIDMINDGLRIQIVDSANRPMFKVG 162

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S+   P    +L+ I  +L      ISI GHTD  P+ +     NW LS DRA ++ + L
Sbjct: 163 SATVEPYMRDILRAIAPLLNDVPNRISISGHTDDLPYASEAYYSNWELSSDRANASRREL 222

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           +  G+ E ++ ++ G A        + +   NRRI I+V +
Sbjct: 223 IMGGMDERKVLRVVGMASSIHLDKENGLAPVNRRISIIVLN 263


>gi|114762178|ref|ZP_01441646.1| chemotaxis protein MotB [Pelagibaca bermudensis HTCC2601]
 gi|114545202|gb|EAU48205.1| chemotaxis protein MotB [Roseovarius sp. HTCC2601]
          Length = 277

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 126/327 (38%), Gaps = 59/327 (18%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            +IIK+K       ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K          
Sbjct: 9   PVIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---------- 58

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                   G+ D  +P                       + I   +         ++IF 
Sbjct: 59  --------GLADYFSP----------------------TIAISRVSGGGDGSLGGDSIFS 88

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +   +      SL   S+              I  ++                  + ++
Sbjct: 89  ENTLPRVGTGATSLRPTSQHAARGASDPGEADEIGAQDEAL---------------EAVE 133

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           DL   +      +++D +++ ++   T  G+++ +      P+FD   + P      +  
Sbjct: 134 DLL--MGRGGESMISDTLMRHIVTRVTDEGLVVELFATEEAPLFDAQGA-PTELLRALSG 190

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            I  V    T  ++I GH  A P       +W +S   A    ++L+  G+S+ RI++++
Sbjct: 191 VIAGVSDMVTNPLAIEGHVGAYPIVLARDPSWEVSTRHADRFRELLLADGLSKARINRVT 250

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
             A       ++PM+  N R++I+   
Sbjct: 251 AHADREP-AKNNPMDPRNTRLEIIFLR 276


>gi|148554180|ref|YP_001261762.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148499370|gb|ABQ67624.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 334

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 57/334 (17%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
            +N+   + IIIKK VA     ++ G+WK+ YADF+T +MAFFL+MWI+ AT++  +K I
Sbjct: 9   GRNEPEPRPIIIKKIVAEGHGGHHGGAWKVAYADFVTAMMAFFLLMWILGATNEKQRKGI 68

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
             YF P        S G                                   +N     +
Sbjct: 69  ADYFTPTMVQFKEKSAG-----------------------------------SNGIFGGE 93

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
            + +   Y   + Q+     S+ +D+  G+         KS ++     L  L + K+ A
Sbjct: 94  SVVDKDNYPHRAAQTGSKSISIPKDASGGE--KDGAGSAKSRDRVAFQKLKLLLQAKMAA 151

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             R  ++                   +  V    TR G+ I ++DQ +  MF   +    
Sbjct: 152 DPRLAKM-------------------MSNVRMVETREGLRIDLVDQADFAMFRSGTDELS 192

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGV 304
            E   +++++ EV   +   + +RGHTDA P+      +NW LS  RA +  + L   GV
Sbjct: 193 SEARALMKQVAEVTNFADNSVIVRGHTDAMPYSKGRTVNNWTLSAARAEATRRALSDFGV 252

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  R ++I G A     +A DP +  NRR+ I +
Sbjct: 253 ANTRFARIEGVADREPYVAGDPYDPRNRRMSITL 286


>gi|307944455|ref|ZP_07659795.1| OmpA/MotB [Roseibium sp. TrichSKD4]
 gi|307772204|gb|EFO31425.1| OmpA/MotB [Roseibium sp. TrichSKD4]
          Length = 284

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 119/312 (38%), Gaps = 53/312 (16%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQN 88
              W + +AD M++L+ FF+++   +  D +  + +       FG    +   G+ + + 
Sbjct: 12  APEWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMAEAFGVKENSRKTGVIEVEG 71

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P R     I                                         S+  ++  +
Sbjct: 72  IPIRQYMKDI-----------------------------------------SQVEQDMDS 90

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             SE+  D  +    E + ++ E   +    +    A   ++  Q++ +           
Sbjct: 91  DFSEEVHDRKRKQGPEANTHETEEAEIERPRQFATAAASLRQAWQEMPE----------I 140

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
             I   ++ E +  G+ I ++DQ    MF + S  P   T  +L K+  VL+     + I
Sbjct: 141 TEISSNIILEESEEGLNIMLVDQDGRSMFREGSKYPYETTRRLLAKMAPVLSQMPNRVEI 200

Query: 269 RGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GHT A     + A   W LS +RA  A Q+L + GV  ++   + G +       +DP 
Sbjct: 201 TGHTTAGGRSVDPAYTGWDLSAERANVARQILAEYGVPSNQFYAVIGKSDSEPLFPNDPY 260

Query: 328 NSANRRIDILVE 339
            ++NRR++IL++
Sbjct: 261 LASNRRVEILLK 272


>gi|260574379|ref|ZP_05842383.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259023275|gb|EEW26567.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 280

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 141/337 (41%), Gaps = 62/337 (18%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G   Q N + IIIK+K  I    ++ G+WK+ YADF+T +MAFFL+MWI+ AT +  +K 
Sbjct: 4   GMAGQSNARPIIIKRKKIIKGGGHHGGAWKVAYADFVTAMMAFFLLMWILGATTEKQRKG 63

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           +  Y               F    P  R S     +   + +                  
Sbjct: 64  VADY---------------FSPTIPINRVSGGGEGMFGGDSVF----------------- 91

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                                S     + G      +  E++  + EN      +  +I 
Sbjct: 92  ---------------------SEQTMPQSGTGASDRSPTEQNQARGENADAEAQAAAQIA 130

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           +++  K L  L  +       +  +  ++ V+ + T  G++I I D +  P+F + +  P
Sbjct: 131 SVE--KALTALGGE------SMTMEAALRHVVTKVTDEGLVIEIFDLQEAPLFAEGTDDP 182

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    + + + EVL  ++  +++ G+  A P   I    W LS  RA +   ++  +G+
Sbjct: 183 QPVLRDIAKMLAEVLGLASNSVAVNGYVKAYPIMMIDNPVWDLSAARAQAMRDLIQTAGL 242

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
             +R+ +ISG+A H+  + +DP    N R+++++  R
Sbjct: 243 PANRVQRISGYADHKP-VTADPTAIRNNRVEVILLRR 278


>gi|226327780|ref|ZP_03803298.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198]
 gi|225203484|gb|EEG85838.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198]
          Length = 350

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 5/203 (2%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K ++ +    G          +     E   LP   ++K L    K++ + L + +   +
Sbjct: 66  KVAIEKGRFSGDATNPIPGGGRDPVYNEGDILPKGQEDKQL--NEKQQFRRLKENLEQVI 123

Query: 204 SGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                  ++   +L +    G+ I IID+ N PMF   S+   P    +L  I  +L  +
Sbjct: 124 LNDPRLKDLKPHLLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIAPILNDT 183

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              IS+ GHTD  P+ + A    NW LS DRA ++ + L+ +G++E ++ ++ G A    
Sbjct: 184 PYKISLSGHTDDIPYASGAFKYSNWELSTDRANASRRELIGAGLNEWKVLRVVGMASTVH 243

Query: 321 KIASDPMNSANRRIDILVEDRQG 343
            +  D   +ANRRI ILV  +Q 
Sbjct: 244 LVKEDGFAAANRRISILVLTKQA 266



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 3/179 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N Q I +KK+       +  G+WKI YADFMT +MAFFLVMW+++ +       + +Y
Sbjct: 2   KSNSQIIRVKKRGRKQHNAH-GGAWKIAYADFMTAMMAFFLVMWLLSISSPQELTRVAEY 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +   +   D  NP     ++ +    D  I     + K  +  Q+ +  +  
Sbjct: 61  FRTPLKVAIEKGRFSGDATNPIPGGGRDPVYNEGD--ILPKGQEDKQLNEKQQFRRLKEN 118

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                L++ +  +   + L    ++G  +       + + +  +  + P  K+ + A+ 
Sbjct: 119 LEQVILNDPRLKDLKPHLLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIA 177


>gi|317491635|ref|ZP_07950071.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921182|gb|EFV42505.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 329

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 179 SKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           S          +RL+ L K+I    L+      +   +L      G+ I IID +N PMF
Sbjct: 101 SMPDPATKADSERLKKLRKQIDQLILTDPRLKALQPHLLINMMDEGLRIQIIDSQNRPMF 160

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295
           +  S+   P    +L+ I  +L      IS+ GHTD  P+ +      NW LS DRA ++
Sbjct: 161 ENGSARVEPYMRDILRAIAPILNDVPNKISLSGHTDDLPYASGERGYSNWELSADRANAS 220

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            + L+  G++E +I ++ G A      +     + NRRI ILV ++  
Sbjct: 221 RRELIAGGLAEGKILRVVGMADTMSLKSQTSDAAINRRISILVLNKSA 268



 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N   I++KK+       ++ GSWKI YADFMT +MAFFLVMW++          I +YF 
Sbjct: 5   NRPIILVKKRKPSKKGGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTKIAEYFR 64

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                 +T         +P      +   +  +  + K+  D    + +++ +  R + +
Sbjct: 65  TPLAVALTHGDRSSASTSPIPGGGDDM--MQKEGEVAKSMPDPATKADSERLKKLRKQID 122

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              L++ +      + L    ++G  +       + + +  +  + P  ++ + A+    
Sbjct: 123 QLILTDPRLKALQPHLLINMMDEGLRIQIIDSQNRPMFENGSARVEPYMRDILRAIA--P 180

Query: 191 RLQDLAKKIS 200
            L D+  KIS
Sbjct: 181 ILNDVPNKIS 190


>gi|237731926|ref|ZP_04562407.1| flagellar motor protein MotB [Citrobacter sp. 30_2]
 gi|226907465|gb|EEH93383.1| flagellar motor protein MotB [Citrobacter sp. 30_2]
          Length = 309

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G  +  S         +       ++K+  +   RK+  Q    
Sbjct: 58  QIAEYFRTPLATAVTGGNRISNSQSPIPGGGDDYTQQQGEVNKQPNIDDLRKRMEQSRLS 117

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           K+   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 118 KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      IS+ GHTD  P+ N      NW LS DRA ++ + L+  G+ + ++ 
Sbjct: 178 RAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSNWELSADRANASRRELVSGGLDDGKVL 237

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 238 RVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270


>gi|268590004|ref|ZP_06124225.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131]
 gi|291314723|gb|EFE55176.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131]
          Length = 305

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 191 RLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           R + L + +    L     + +   +L +    G+ I I+D  N PMF   S+   P   
Sbjct: 112 RFEKLKESLEQAILKDPRLNELKPHLLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMR 171

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L+ I  +L      ISI GHTD   + N A   NW LS DRA ++ + L++ G+ E++
Sbjct: 172 DILRAIAPLLNDVPNRISISGHTDDLAYANGANYSNWELSSDRANASRRELIRGGMDENK 231

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + ++ G A        D     NRRI I+V + +
Sbjct: 232 VLRVVGMASAIHLDKEDGFAPINRRISIIVLNDE 265



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N   +I  KK +      + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF 
Sbjct: 4   NTPHVIRVKKRSSHHQNGHGGSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                 +       D  NP     ++ I    D  +     ++  G+ N + +  +    
Sbjct: 64  TPLSTAINPGSKSGDATNPIPGGGKDPI--FRDGDVMPEPNNIIDGNANYRFEKLKESLE 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              L + + +E   + L      G  +       + + K  +  + P  ++ + A+    
Sbjct: 122 QAILKDPRLNELKPHLLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMRDILRAIA--P 179

Query: 191 RLQDLAKKIS 200
            L D+  +IS
Sbjct: 180 LLNDVPNRIS 189


>gi|226944522|ref|YP_002799595.1| flagellar motor protein [Azotobacter vinelandii DJ]
 gi|226719449|gb|ACO78620.1| Flagellar motor protein [Azotobacter vinelandii DJ]
          Length = 306

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 3/189 (1%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVK 213
           +++      + +  + E + + P    +++  + + RL+ L ++I   LS   +   +  
Sbjct: 78  ENVIPGGGPDPTFAEGERFRIDPQLASRLVDEQERARLRQLERRIREALSINPILKELKD 137

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            +L + T  G+ I ++D    PMF+  S+   P    +L+ +  +L      I I GHTD
Sbjct: 138 QILIDLTPEGLRIQLVDTEQRPMFEIGSARVAPYMRTLLRTLAPMLNELPNRIQISGHTD 197

Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           + P+        NW LS DRA ++ + L+  G++ +++ + SG +         P ++AN
Sbjct: 198 SLPYAGGEAGYSNWELSADRANASRRELIAGGLALEKLLRTSGMSDRIPFEGVAPNDAAN 257

Query: 332 RRIDILVED 340
           RRI ++V D
Sbjct: 258 RRIAVIVLD 266



 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 4/192 (2%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           +++ +II ++       ++ G+WKI +ADFMT LMA FLV+W++  + +  K A+ +YF 
Sbjct: 2   SERPVIIIRRKKRGGEGHHGGAWKIAFADFMTALMALFLVLWMLANSGEAQKAAVAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                 +         +N       +      +       +  ++    ++ + ++LE  
Sbjct: 62  TPLVVALMGGDREGASENVIPGGGPDPTFAEGERFRIDPQLASRLVDEQERARLRQLERR 121

Query: 131 IFY--LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           I      N    E     L   + +G  +      ++ + +  +  + P  +  +  +  
Sbjct: 122 IREALSINPILKELKDQILIDLTPEGLRIQLVDTEQRPMFEIGSARVAPYMRTLLRTLA- 180

Query: 189 KKRLQDLAKKIS 200
              L +L  +I 
Sbjct: 181 -PMLNELPNRIQ 191


>gi|323498631|ref|ZP_08103623.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326]
 gi|323316329|gb|EGA69348.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 121/328 (36%), Gaps = 49/328 (14%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81
            L  W   +AD M++LM FF+++   +  D    K I           N      +    
Sbjct: 12  GLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGT 71

Query: 82  GIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            I  ++  P R     ID+ + +   IT+ +++   G +++    QR             
Sbjct: 72  SIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------- 118

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                           D  K T  +      +N        ++  + +  + L+ L + I
Sbjct: 119 ----------------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESI 162

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L   +    ++    E     I I I   R    F + S+   P+   ++++I E++
Sbjct: 163 KKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 216

Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I + GHTD     + + R NW LS  RA S  Q + K  G +  R+ ++ G A 
Sbjct: 217 KDIPGIIRVSGHTDNQRIESELYRSNWDLSAQRAVSVAQEMEKVRGFTPQRL-RVRGMAD 275

Query: 318 HRLKIASDPM--NSANRRIDILVEDRQG 343
                 +D     S NRR++I +   + 
Sbjct: 276 TEPLGPNDTEAQRSRNRRVEISIMQGEA 303


>gi|283785634|ref|YP_003365499.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium
           ICC168]
 gi|282949088|emb|CBG88694.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium
           ICC168]
          Length = 309

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQKGEVHKQPNIDELKKRMEQSRLSKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L++ G+ + ++ ++ G A         P ++ NRRI +LV +RQ 
Sbjct: 212 WELSADRANASRRELVQGGLDDGKVLRVVGMAATMRLSDRGPEDAVNRRISLLVLNRQA 270


>gi|283832712|ref|ZP_06352453.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220]
 gi|291072391|gb|EFE10500.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220]
          Length = 309

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + + +     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVHKQPNIDDLRKRMEQSRLRKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVSGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270


>gi|254438344|ref|ZP_05051838.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307]
 gi|198253790|gb|EDY78104.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307]
          Length = 275

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 125/335 (37%), Gaps = 65/335 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ N   IIIK+K  I    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K +  
Sbjct: 5   DKANAPVIIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFLMMWLLNATTEQQRKGLAD 64

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF P                                  IT + V                
Sbjct: 65  YFAP---------------------------------TITVSRVSGGGEGMFGGTNMMSD 91

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +  +   +           L    E   ++    ++E          L  +  E ++  +
Sbjct: 92  DALVQDGTGQSGGVPIDGDLVGTQESAAEVAALQEVE--------ALLLGIGGESLVQQE 143

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                                   ++ V+   T  G++I +  + + P+F   S+ P P 
Sbjct: 144 -----------------------ALRHVVTRVTDEGLIIEVFARDDAPLFISESTEPAPV 180

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            I +           T  ++I GHT   P     R  W +S  RA +  ++L   G+   
Sbjct: 181 LIELTTMFARTFDLVTNPVAIEGHTRTRPLVIAERPVWDISTGRAETVRRLLEAGGLDSL 240

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           RI++I+G A   L    + ++  N RI+I++   +
Sbjct: 241 RIARITGNADRDL-ARVEALSVRNNRIEIILLRIE 274


>gi|86750474|ref|YP_486970.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86573502|gb|ABD08059.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 273

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 115/323 (35%), Gaps = 66/323 (20%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +  +    W + +AD M +L+AFF+++   +  D D  K +       FG      
Sbjct: 3   KKKREEAHGGHGWFVTFADLMALLLAFFVMLTAFSTQDKDKLKVVAGSMREAFGVQSDAR 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI +                                           + +      + 
Sbjct: 63  YSGIIE------------------------------------------NDGLPTRGKVKN 80

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +EH    L+       ++ K   +     +E            + +   ++ LQD+ +  
Sbjct: 81  TEHVNPELSTAKPSPGEVSKDEGIHTKEEREFA----------LASASLRQALQDMPE-- 128

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+FE T+ G+ + I+DQ    MF   S  P   T  +LQ +   L
Sbjct: 129 --------ISELSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRRLLQSLAGPL 180

Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
             +   I+I GHT A   P R+   + + LS DRA +  Q+L + GV       ++G + 
Sbjct: 181 RATPLRITIAGHTSAGLMPARS-DYNGFDLSADRANAVRQILEREGVPTSHFFAVTGRSD 239

Query: 318 HRLKIASDPMNSANRRIDILVED 340
            +     DP  +ANRR+ I +  
Sbjct: 240 TQPLFPEDPAIAANRRVTITLMR 262


>gi|254225118|ref|ZP_04918732.1| chemotaxis protein PomB [Vibrio cholerae V51]
 gi|125622505|gb|EAZ50825.1| chemotaxis protein PomB [Vibrio cholerae V51]
          Length = 318

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 120/332 (36%), Gaps = 47/332 (14%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 4   EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ +++ + G +++    QR    
Sbjct: 64  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQ 123

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    +++ S     +   + ++ +    S                              
Sbjct: 124 LTGGQSAETSVQDSQNTQSEMQQQQAQAMSEQ---------------------------- 155

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ +A+ I   LS  +       +  E     I I I   R    F + S+   P+   
Sbjct: 156 -METVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++++I E++      + + GHTD       + R NW LS  RA S  Q + K    +   
Sbjct: 209 LVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLR 268

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            ++ G A  +    +D       NRR++I + 
Sbjct: 269 LQVRGLADTQPLGPNDTEAQRATNRRVEISIL 300


>gi|15640909|ref|NP_230540.1| flagellar motor protein MotB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588125|ref|ZP_01677872.1| chemotaxis protein PomB [Vibrio cholerae 2740-80]
 gi|121728326|ref|ZP_01681356.1| chemotaxis protein PomB [Vibrio cholerae V52]
 gi|147674334|ref|YP_001216371.1| flagellar motor protein MotB [Vibrio cholerae O395]
 gi|153216012|ref|ZP_01950234.1| flagellar motor protein [Vibrio cholerae 1587]
 gi|153802297|ref|ZP_01956883.1| chemotaxis protein PomB [Vibrio cholerae MZO-3]
 gi|153817212|ref|ZP_01969879.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457]
 gi|153823690|ref|ZP_01976357.1| chemotaxis protein PomB [Vibrio cholerae B33]
 gi|153827046|ref|ZP_01979713.1| chemotaxis protein PomB [Vibrio cholerae MZO-2]
 gi|153830558|ref|ZP_01983225.1| chemotaxis protein PomB [Vibrio cholerae 623-39]
 gi|227081069|ref|YP_002809620.1| chemotaxis protein PomB [Vibrio cholerae M66-2]
 gi|229505502|ref|ZP_04395012.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286]
 gi|229510828|ref|ZP_04400307.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33]
 gi|229513008|ref|ZP_04402474.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21]
 gi|229517949|ref|ZP_04407393.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9]
 gi|229523310|ref|ZP_04412717.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80]
 gi|229525508|ref|ZP_04414913.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530005|ref|ZP_04419395.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)]
 gi|229608521|ref|YP_002879169.1| flagellar motor protein MotB [Vibrio cholerae MJ-1236]
 gi|254285566|ref|ZP_04960530.1| chemotaxis protein PomB [Vibrio cholerae AM-19226]
 gi|254848028|ref|ZP_05237378.1| flagellar motor protein PomB [Vibrio cholerae MO10]
 gi|262191489|ref|ZP_06049674.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93]
 gi|297581278|ref|ZP_06943202.1| chemotaxis protein PomB [Vibrio cholerae RC385]
 gi|298498985|ref|ZP_07008792.1| flagellar motor protein PomB [Vibrio cholerae MAK 757]
 gi|9655348|gb|AAF94055.1| chemotaxis protein PomB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|51241597|emb|CAH17908.1| flagellar motor protein PomB [Vibrio cholerae]
 gi|121547616|gb|EAX57715.1| chemotaxis protein PomB [Vibrio cholerae 2740-80]
 gi|121629381|gb|EAX61811.1| chemotaxis protein PomB [Vibrio cholerae V52]
 gi|124114525|gb|EAY33345.1| flagellar motor protein [Vibrio cholerae 1587]
 gi|124122179|gb|EAY40922.1| chemotaxis protein PomB [Vibrio cholerae MZO-3]
 gi|126512246|gb|EAZ74840.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457]
 gi|126518793|gb|EAZ76016.1| chemotaxis protein PomB [Vibrio cholerae B33]
 gi|146316217|gb|ABQ20756.1| chemotaxis protein PomB [Vibrio cholerae O395]
 gi|148873956|gb|EDL72091.1| chemotaxis protein PomB [Vibrio cholerae 623-39]
 gi|149739087|gb|EDM53383.1| chemotaxis protein PomB [Vibrio cholerae MZO-2]
 gi|150424428|gb|EDN16365.1| chemotaxis protein PomB [Vibrio cholerae AM-19226]
 gi|227008957|gb|ACP05169.1| chemotaxis protein PomB [Vibrio cholerae M66-2]
 gi|227012713|gb|ACP08923.1| chemotaxis protein PomB [Vibrio cholerae O395]
 gi|229333779|gb|EEN99265.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)]
 gi|229339089|gb|EEO04106.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis
           VL426]
 gi|229339673|gb|EEO04688.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80]
 gi|229344664|gb|EEO09638.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9]
 gi|229349901|gb|EEO14855.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21]
 gi|229350793|gb|EEO15734.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33]
 gi|229357725|gb|EEO22642.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286]
 gi|229371176|gb|ACQ61599.1| Flagellar motor rotation protein MotB [Vibrio cholerae MJ-1236]
 gi|254843733|gb|EET22147.1| flagellar motor protein PomB [Vibrio cholerae MO10]
 gi|262032637|gb|EEY51190.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93]
 gi|297534594|gb|EFH73431.1| chemotaxis protein PomB [Vibrio cholerae RC385]
 gi|297543318|gb|EFH79368.1| flagellar motor protein PomB [Vibrio cholerae MAK 757]
          Length = 318

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 120/332 (36%), Gaps = 47/332 (14%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 4   EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     I  ++  P R     ID+ + +   IT+ +++ + G +++    QR    
Sbjct: 64  EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQ 123

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    +++ S     +   + ++ +    S                              
Sbjct: 124 LTGGQSAETSVQDNQNTQSEMQQQQAQAMSEQ---------------------------- 155

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ +A+ I   LS  +       +  E     I I I   R    F + S+   P+   
Sbjct: 156 -METVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++++I E++      + + GHTD       + R NW LS  RA S  Q + K    +   
Sbjct: 209 LVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLR 268

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            ++ G A  +    +D       NRR++I + 
Sbjct: 269 LQVRGLADTQPLGPNDTEAQRATNRRVEISIL 300


>gi|197285528|ref|YP_002151400.1| motility protein B [Proteus mirabilis HI4320]
 gi|227356023|ref|ZP_03840414.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906]
 gi|194683015|emb|CAR43481.1| chemotaxis protein (motility protein B) [Proteus mirabilis HI4320]
 gi|227163800|gb|EEI48708.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906]
          Length = 349

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 5/208 (2%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--AMKRKKRLQDLAK 197
           +E+ +  L    EKG+     T+      ++  Y    +  + +    +  K++ + L +
Sbjct: 58  AEYFRTPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGDVLPKGVEDKQLNEKQQFRKLKE 117

Query: 198 KISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            +    L      ++   +L +    G+ I IID+ + PMF   S+   P    +L  I 
Sbjct: 118 NLEQVILQDPRLKDLKPHLLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIA 177

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +L  S   IS+ GHTD  P+ + A    NW LS DRA ++ + L+ +G++E ++ ++ G
Sbjct: 178 PILNDSPYKISLSGHTDDIPYASGALKYSNWELSTDRANASRRELIGAGLAEWKVLRVVG 237

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342
            A     +  D    ANRRI ILV  +Q
Sbjct: 238 MASTVHLVKEDGFAPANRRISILVLTKQ 265



 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 3/179 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N Q I +KK+        + G+WKI YADFMT +MAFFLVMW+++         + +Y
Sbjct: 2   KSNSQIIRVKKRGKKQHNAQH-GAWKIAYADFMTAMMAFFLVMWLLSIASPQELTRVAEY 60

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +   +   D  NP     ++ +    D  +    V+ K  +  Q+ +  +  
Sbjct: 61  FRTPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGD--VLPKGVEDKQLNEKQQFRKLKEN 118

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                L + +  +   + L    ++G  +       + + K  +  + P  K+ + A+ 
Sbjct: 119 LEQVILQDPRLKDLKPHLLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIA 177


>gi|238758125|ref|ZP_04619305.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236]
 gi|238703663|gb|EEP96200.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236]
          Length = 364

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 114/304 (37%), Gaps = 73/304 (24%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++ +       I +YF    K  +T+     D  +       +    
Sbjct: 1   MTAMMAFFLVMWLLSVSSPQQLTQIAEYFRTPLKVALTSGDKSSDSTSVIPGGGDDP--- 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                                                             +++  ++ K 
Sbjct: 58  --------------------------------------------------TQQIGEVRKH 67

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D E+S  ++E Y L  L ++    ++   RL+ L   +   L  ++ + +   +     
Sbjct: 68  IDSEES--RKEEYRLNKLREKLDQLIESDPRLKALRPHL---LINMMDEGLRIQI----- 117

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
                   ID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+   
Sbjct: 118 --------IDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATG 169

Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA ++ + L+  G+ + ++ ++ G A           +  NRRI ILV
Sbjct: 170 ERGYSNWELSADRANASRRELLAGGLDDGKVLRVVGMASTMRLKEQTSDDPVNRRISILV 229

Query: 339 EDRQ 342
            ++Q
Sbjct: 230 LNKQ 233


>gi|213426377|ref|ZP_03359127.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 309

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELEKTVEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270



 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +L+      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELEKTVEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|59711322|ref|YP_204098.1| flagellar motor protein MotB [Vibrio fischeri ES114]
 gi|197335182|ref|YP_002155478.1| flagellar motor protein [Vibrio fischeri MJ11]
 gi|59479423|gb|AAW85210.1| flagellar motor protein MotB1 [Vibrio fischeri ES114]
 gi|197316672|gb|ACH66119.1| flagellar motor protein [Vibrio fischeri MJ11]
          Length = 309

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 116/330 (35%), Gaps = 54/330 (16%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78
            P     W   +AD  T+LM FF+++   +  D    K I           N      + 
Sbjct: 9   CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIP 68

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +  ++  P R     I++ + +   I + ++D   G +++    +R         +
Sbjct: 69  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGTKREAGKQTGGES 128

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              S         +SE                                   + +  Q+L 
Sbjct: 129 PSNSTQTSAQSNSESES----------------------------------QTQSQQELE 154

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
             I   L   +++  ++    E     ++I I   R    F   S+   P+   ++++I 
Sbjct: 155 DTIKKALEREISEGAIE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIA 208

Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314
           E++     +I + GHTD  P    + R NW LS  RA S    + +  G   DR+ ++ G
Sbjct: 209 ELVKDVPGIIRVSGHTDNQPLDSELYRSNWDLSAQRAVSVALEMERVKGFESDRL-RVRG 267

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            A     +++      + NRR++I +   +
Sbjct: 268 MASTEPLVSNKTAEGRARNRRVEISIMQGK 297


>gi|261340281|ref|ZP_05968139.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317370|gb|EFC56308.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 309

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G+ +  S         +       + KE  +   +K+  Q   K
Sbjct: 58  QIAEYFRTPLATAVTGGQRISNSDSPIPGGGDDYTQQKGEVKKEPNIDELKKRMEQARLK 117

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           K+   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 118 KVRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      +S+ GHTD  P+ N      NW LS DRA ++ + L+  G+ + ++ 
Sbjct: 178 RAIAPVLNGIPNRVSLSGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDDGKVL 237

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 238 RVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270



 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQSHP-IVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T  + I +  +P      +      +     N  +LK      + +  R
Sbjct: 61  EYFRTPLATAVTGGQRISNSDSPIPGGGDDYTQQKGEVKKEPNIDELKKRMEQARLKKVR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    ++ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|295095518|emb|CBK84608.1| Flagellar motor protein [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 309

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVKKQPNIDELKKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+        N
Sbjct: 152 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270


>gi|260773298|ref|ZP_05882214.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP
           69.14]
 gi|260612437|gb|EEX37640.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP
           69.14]
          Length = 314

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 46/333 (13%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
                P  L ++   +AD M +LM FF+++   +  D    K I           N    
Sbjct: 5   KRKCPPPGLPAYMGTFADLMALLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 64

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     +  ++  P R     ID+ + +   IT+ +++   G +++    QR +  + 
Sbjct: 65  KDIPKGTSVIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGDSDRAGGNQRDDGQLT 124

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S       T DS+  +D  +  +  +++++E                     L
Sbjct: 125 GGESPETS-------TEDSQDNEDAEQEQEQSEALSEEMEIV-----------------L 160

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +++ K +   +           V  E     ILI I   R    F + S+   P+   ++
Sbjct: 161 ENIKKALDREIEQ-------GAVEVENLGQQILIRI---RERGAFPEGSAFLQPQFRPLV 210

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           ++I E++     ++ + GHTD       + R NW LS  RA S  Q + +    + R  +
Sbjct: 211 RQIAELVKDVPGIVQVTGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMERVTGFDHRRLE 270

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G A       +D     S NRR++I +   +
Sbjct: 271 VRGLADTAPVGPNDTEAQRSRNRRVEIGIMQGK 303


>gi|224824155|ref|ZP_03697263.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224603574|gb|EEG09749.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 302

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 4/208 (1%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKK 198
           +E+ +  L      G+    +T + K    +       + + +   ++++K RL  L KK
Sbjct: 59  AEYFRTPLKVALAGGQGSGDATSMIKGGGTDLTRQAGQVKRAREEEIQQEKTRLAKLQKK 118

Query: 199 ISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I S +    V       +  E T  G+ I I+D++N PMFD  S+  LP T  +LQ++G+
Sbjct: 119 IESNIEQSAVLKAYKNQLQLEMTPEGLRIQIVDEQNRPMFDSGSANLLPHTRTILQELGK 178

Query: 258 VLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            L      +SI GHTDA PF        NW LS DRA +A + L+  G+  D+I ++ G 
Sbjct: 179 ELNGVANRLSISGHTDAKPFGGAQHGYSNWELSADRANAARRELLAGGLMHDKILRVVGL 238

Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQG 343
           A     I S+  +  NRRI I+V +++ 
Sbjct: 239 AAANPLIRSNVFSPENRRIAIVVLNKEA 266


>gi|209694505|ref|YP_002262433.1| flagellar motor protein MotB [Aliivibrio salmonicida LFI1238]
 gi|208008456|emb|CAQ78622.1| sodium-driven polar flagellar protein MotB [Aliivibrio salmonicida
           LFI1238]
          Length = 309

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 54/330 (16%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78
            P     W  ++AD  T+LM FF+++   +  D    K I           N      + 
Sbjct: 9   CPPGSPIWMAIFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIP 68

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +  ++  P R     I++ + +   I + ++D   G +++    +R   N+    +
Sbjct: 69  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGSKREAGNLTGGES 128

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S  S                                      ++    +  + +  Q+L 
Sbjct: 129 SSTSTQTN----------------------------------AQSDAESQSQNQSQQELE 154

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + I   L   +A+  V+    E     ++I I   R    F   S+   P+   ++++IG
Sbjct: 155 ETIKKALEREIAEGAVE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIG 208

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISG 314
           E++     +I + GHTD  P  + + R NW LS  RA S  +++L   G + DR+ ++ G
Sbjct: 209 ELVKDVPGIIRVSGHTDNQPLESELYRSNWDLSAQRAVSVGHEMLRVKGFNSDRL-RVRG 267

Query: 315 FAHHRL--KIASDPMNSANRRIDILVEDRQ 342
            A         +    + NRR++I +   +
Sbjct: 268 MASTEPLGPNKTAAQRARNRRVEISIMQGK 297


>gi|16760871|ref|NP_456488.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141437|ref|NP_804779.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163277|ref|ZP_03348987.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213622329|ref|ZP_03375112.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|25298889|pir||AF0746 motility protein B [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503168|emb|CAD05673.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137064|gb|AAO68628.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 309

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|331663388|ref|ZP_08364298.1| chemotaxis protein MotB [Escherichia coli TA143]
 gi|331059187|gb|EGI31164.1| chemotaxis protein MotB [Escherichia coli TA143]
          Length = 366

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 149 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 208

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 209 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 268

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 269 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 327


>gi|307611161|emb|CBX00805.1| hypothetical protein LPW_25091 [Legionella pneumophila 130b]
          Length = 253

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 63/302 (20%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           +MAFFL+MW++ + +   K  I +YF    K  +   + + + +   +    N  D    
Sbjct: 1   MMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVALFGGESMGNRKATIKGGGPNIED---- 56

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                                          ++ Q S   K  +     K K++ +S   
Sbjct: 57  -------------------------------TDGQVSATNKPLINESIAKDKEIIESQAN 85

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222
           E                         K+L++L  +I+ ++    +   + K +L +    
Sbjct: 86  EI------------------------KKLEELKSEINLSMEKDPSLAGLKKQLLMDVVSD 121

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
           G+ I +ID +  PMFD  S    PE   +L  I ++L      I+I+GHTDA+P+ N   
Sbjct: 122 GLRIQLIDNQKKPMFDVGSDKINPEIEPILANIAKLLNSVPNKITIQGHTDANPYHNPEE 181

Query: 282 --RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
               NW LS  RA +A + L+K+G+ E+++  ++G++   L    +P N  NRRI I+V 
Sbjct: 182 LEYTNWELSAQRANAARRALIKAGMDENKVMTVTGYSSTVLLDKKNPYNPENRRISIIVM 241

Query: 340 DR 341
            +
Sbjct: 242 KK 243


>gi|157145319|ref|YP_001452639.1| flagellar motor protein MotB [Citrobacter koseri ATCC BAA-895]
 gi|157082524|gb|ABV12202.1| hypothetical protein CKO_01059 [Citrobacter koseri ATCC BAA-895]
          Length = 308

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 3/193 (1%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
                      +   +++       + +++     + RL  L   +   +        ++
Sbjct: 77  ANSESPIPGGGEDYTQQQGEVNKQPNIDELKKRMEQSRLSKLRGDLDQLIESDPKLRALR 136

Query: 214 -GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +  +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHT
Sbjct: 137 PHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRGIAPVLNGIPNRISLSGHT 196

Query: 273 DASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           D  P+ +      NW LS DRA ++ + L+  G+ + ++ ++ G A         P ++ 
Sbjct: 197 DDFPYASGERGYSNWELSADRANASRRELVVGGLDDGKVLRVVGMAATMRLSDRGPDDAI 256

Query: 331 NRRIDILVEDRQG 343
           NRRI +LV ++Q 
Sbjct: 257 NRRISLLVLNKQA 269


>gi|16765264|ref|NP_460879.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56413159|ref|YP_150234.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180499|ref|YP_216916.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613518|ref|YP_001587483.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552438|ref|ZP_02346191.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994228|ref|ZP_02575320.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168238556|ref|ZP_02663614.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168241555|ref|ZP_02666487.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168259799|ref|ZP_02681772.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168462543|ref|ZP_02696474.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820750|ref|ZP_02832750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444100|ref|YP_002041189.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450845|ref|YP_002045977.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472145|ref|ZP_03078129.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737421|ref|YP_002114959.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248088|ref|YP_002146098.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264977|ref|ZP_03165051.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197362085|ref|YP_002141722.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243979|ref|YP_002215160.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390054|ref|ZP_03216665.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204931026|ref|ZP_03221852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205352375|ref|YP_002226176.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856557|ref|YP_002243208.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583574|ref|YP_002637372.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912501|ref|ZP_04656338.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|2494511|sp|P55892|MOTB_SALTY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|1764128|gb|AAC45266.1| MotB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420459|gb|AAL20838.1| enables flagellar motor rotation [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56127416|gb|AAV76922.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62128132|gb|AAX65835.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362882|gb|ABX66650.1| hypothetical protein SPAB_01238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402763|gb|ACF62985.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409149|gb|ACF69368.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458509|gb|EDX47348.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712923|gb|ACF92144.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634203|gb|EDX52555.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197093562|emb|CAR59024.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211791|gb|ACH49188.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243232|gb|EDY25852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288646|gb|EDY28021.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938495|gb|ACH75828.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602499|gb|EDZ01045.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320070|gb|EDZ05275.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205272156|emb|CAR37011.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322895|gb|EDZ10734.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327891|gb|EDZ14655.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205339183|gb|EDZ25947.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342679|gb|EDZ29443.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350979|gb|EDZ37610.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708360|emb|CAR32664.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468101|gb|ACN45931.1| flagellar motor protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247092|emb|CBG24913.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993909|gb|ACY88794.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158442|emb|CBW17951.1| motility protein B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912916|dbj|BAJ36890.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085458|emb|CBY95239.1| Chemotaxis protein motB Motility protein B [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224566|gb|EFX49629.1| Flagellar motor rotation protein MotB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616922|gb|EFY13830.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618161|gb|EFY15053.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625831|gb|EFY22650.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626283|gb|EFY23093.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632697|gb|EFY29442.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639041|gb|EFY35734.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640481|gb|EFY37134.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646010|gb|EFY42527.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655476|gb|EFY51784.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660255|gb|EFY56493.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322668121|gb|EFY64280.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674119|gb|EFY70213.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675527|gb|EFY71601.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683059|gb|EFY79075.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686753|gb|EFY82731.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322714975|gb|EFZ06546.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130206|gb|ADX17636.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195356|gb|EFZ80536.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199248|gb|EFZ84343.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204163|gb|EFZ89175.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323211878|gb|EFZ96707.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217488|gb|EGA02207.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221977|gb|EGA06366.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231510|gb|EGA15623.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235952|gb|EGA20031.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240522|gb|EGA24565.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245414|gb|EGA29414.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250185|gb|EGA34077.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253633|gb|EGA37461.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258567|gb|EGA42233.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259386|gb|EGA43023.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266189|gb|EGA49679.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|326622909|gb|EGE29254.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627426|gb|EGE33769.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988815|gb|AEF07798.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 309

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270



 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|296101766|ref|YP_003611912.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056225|gb|ADF60963.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 309

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G  +  S         +       + KE  +   ++K  Q   K
Sbjct: 58  QIAEYFRTPLATAVSGGPRISNSDSPIPGGGDDYTQKQGEVKKEPNIDELKRKMEQARLK 117

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           K+   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 118 KLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      IS+ GHTD  P+        NW LS DRA ++ + L+  G+ + ++ 
Sbjct: 178 RAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKVL 237

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 238 RVVGMAATMRVSDRGPDDAINRRISLLVLNQQA 270


>gi|120599624|ref|YP_964198.1| flagellar motor protein MotB [Shewanella sp. W3-18-1]
 gi|146292382|ref|YP_001182806.1| flagellar motor protein MotB [Shewanella putrefaciens CN-32]
 gi|120559717|gb|ABM25644.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145564072|gb|ABP75007.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
 gi|319425682|gb|ADV53756.1| stator-force generator of Na+ coupled flagellar motor, PomB
           [Shewanella putrefaciens 200]
          Length = 308

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 116/336 (34%), Gaps = 54/336 (16%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
                 P     W   +AD M++LM FF+++   +  D    K I           N   
Sbjct: 2   AKCKCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKVE 61

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +   +  P R     I++   +   +T+  +D + G  +     Q+     
Sbjct: 62  VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDFQAGEDDSAGGVQQQRG-- 119

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                                           E+   +  +         K  A   + +
Sbjct: 120 --------------------------------EQRGGEASSTAQETAEAVKADAAAAQDK 147

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    KK++  L+  + D  ++    E+    I+I I   R    F   S    P    V
Sbjct: 148 INQQVKKMAQELNKEIIDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309
           ++ +GE+L     VI++ G+TD     +     NW LS  RA +    L++  G    R+
Sbjct: 202 VRSVGELLKDVPGVITVAGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM 261

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
            K+ G A +   + +D     + NRR++I +E  + 
Sbjct: 262 -KVVGMASNNPIVPNDSPENRARNRRVEIAIEQGKA 296


>gi|161502956|ref|YP_001570068.1| flagellar motor protein MotB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864303|gb|ABX20926.1| hypothetical protein SARI_01018 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 309

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       + 
Sbjct: 2   KNQAHP-IVVVKRRKHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQLA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|113971062|ref|YP_734855.1| flagellar motor protein MotB [Shewanella sp. MR-4]
 gi|114048292|ref|YP_738842.1| flagellar motor protein MotB [Shewanella sp. MR-7]
 gi|117921338|ref|YP_870530.1| flagellar motor protein MotB [Shewanella sp. ANA-3]
 gi|113885746|gb|ABI39798.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
 gi|113889734|gb|ABI43785.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
 gi|117613670|gb|ABK49124.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 306

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 54/336 (16%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
              +  P     W   +AD M++LM FF+++   +  D    K I           N   
Sbjct: 2   AKCNCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSMKYAFGVQNKVE 61

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +   +  P R     I++   +   +T+  +D + G  +     Q+   + 
Sbjct: 62  VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDYQAGEDDSAGGVQQQNGSQ 121

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                S  ++   +++  ++   +D                                  +
Sbjct: 122 RGGEASATAQETADAVKAEAAAAQD----------------------------------K 147

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    KK++  L+  + D     +  E+    I+I I   R    F   S    P    V
Sbjct: 148 INQQVKKMAQELNNEITDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309
           ++ +GE+L     +I++ G+TD     +     NW LS  RA +   VL++  G    R+
Sbjct: 202 VRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRM 261

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
            K+ G A +   + +D     + NRR++I +E  + 
Sbjct: 262 -KVVGMASNNPIVPNDSPENRARNRRVEIAIEQGKA 296


>gi|332307428|ref|YP_004435279.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174757|gb|AEE24011.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 305

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 39/325 (12%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   PKCPPAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I         D     T Q++  +  +  + + + ++ S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +    +  E+     + T  E+S                  + K     +++AK++   
Sbjct: 115 GRQ--KQRGEQKGGAAQQTASEQS------------------SAKTTASQEEVAKQMKKV 154

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              L  + +   +  E+    ++I I   R    F   S+   P+   +L+KIG +LA  
Sbjct: 155 AQQLEKEILDGAIEMESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADM 211

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
              I I GH+D+    N + R NW LS  RA +  + L K+ G  E R+  + G A    
Sbjct: 212 PGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRM-AVIGKADTAP 270

Query: 321 KIASDP--MNSANRRIDILVEDRQG 343
            +  D     S NRR++I V+  + 
Sbjct: 271 LLGEDDAQARSRNRRVEIAVKQGKA 295


>gi|238795648|ref|ZP_04639162.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC
           43969]
 gi|238720374|gb|EEQ12176.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC
           43969]
          Length = 385

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 73/304 (24%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++ +       I  YF    K  +T+        +P      +    
Sbjct: 1   MTAMMAFFLVMWLLSVSSPQELTQIADYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                                                             +++  ++ K 
Sbjct: 58  --------------------------------------------------TQQVGEVRKH 67

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D E+S  + E Y L  L ++    ++   RL+ L   +       + + + +G+  +  
Sbjct: 68  IDSEES--RREEYRLNKLREKLDQLIESDPRLRALRPHL-------LINMMEEGLRIQ-- 116

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
                  IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N 
Sbjct: 117 -------IIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANG 169

Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
                NW LS DRA ++ + L+  G+ E ++ ++ G A           +  NRRI ILV
Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILV 229

Query: 339 EDRQ 342
            ++Q
Sbjct: 230 LNKQ 233


>gi|238756396|ref|ZP_04617706.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473]
 gi|238705369|gb|EEP97776.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473]
          Length = 354

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +         +     K + RL  L +K+   +        ++  +L      G+
Sbjct: 54  GDDPTQQQGEVRKQSQSAETKKEQARLNKLREKLEELIESDPRLKALRPHLLINMMDEGL 113

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID +N PMF   S+   P    +L+ I  +L      IS+ GHTD  P+ N     
Sbjct: 114 RIQIIDSQNRPMFQMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGERGY 173

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            NW LS DRA ++ + L+  G++E ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 174 SNWELSADRANASRRELLSGGLAEGKVLRVVGMASTMRLKEQGADDPVNRRISILVLNKQ 233


>gi|262362261|gb|ACY58982.1| chemotaxis MotB protein [Yersinia pestis D106004]
          Length = 276

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV +++
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKR 267



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|238563173|ref|ZP_04610426.1| flagellar motor protein [Burkholderia mallei GB8 horse 4]
 gi|251767164|ref|ZP_04819981.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20]
 gi|238521179|gb|EEP84632.1| flagellar motor protein [Burkholderia mallei GB8 horse 4]
 gi|243063600|gb|EES45786.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20]
          Length = 260

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLV 207
           R S   +    +          ++        +  L  + + RL DL  K+ + +     
Sbjct: 13  RASMPARPAAPTARRTWPSASRKSEDDALAQAQGSLERREQVRLHDLQVKLMAAIEANPT 72

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
                + +  ++T  G+ I I+D +  PMF  SS    P    +L++IG+ L      I 
Sbjct: 73  LRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDILREIGKTLNDVPNRII 132

Query: 268 IRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++GHTDA P+        NW LS DRA ++ + L+  G+ E ++ ++ G A  +    +D
Sbjct: 133 VQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRVLGLASTQNLNKAD 192

Query: 326 PMNSANRRIDILVEDRQ 342
           P++  NRRI I+V +R+
Sbjct: 193 PLDPENRRISIIVLNRK 209


>gi|126173599|ref|YP_001049748.1| flagellar motor protein MotB [Shewanella baltica OS155]
 gi|152999879|ref|YP_001365560.1| flagellar motor protein MotB [Shewanella baltica OS185]
 gi|160874504|ref|YP_001553820.1| flagellar motor protein MotB [Shewanella baltica OS195]
 gi|217974157|ref|YP_002358908.1| flagellar motor protein MotB [Shewanella baltica OS223]
 gi|304409470|ref|ZP_07391090.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307303828|ref|ZP_07583581.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|125996804|gb|ABN60879.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|151364497|gb|ABS07497.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|160860026|gb|ABX48560.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|217499292|gb|ACK47485.1| OmpA/MotB domain protein [Shewanella baltica OS223]
 gi|304351988|gb|EFM16386.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306912726|gb|EFN43149.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|315266742|gb|ADT93595.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 310

 Score =  182 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 36/328 (10%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +  P     W   +AD M++LM FF+++   +  D    K I              
Sbjct: 3   KAKCNCPPAGAPMWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSM---------- 52

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K  F  QN  E     K    I         D        ++  +  E  + Y +    
Sbjct: 53  -KYAFGVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDYQAGEDD 111

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S       +     G+    + ++                  K  A   + ++    KK+
Sbjct: 112 SAGGVQQQSGSQRGGEATATAQEV--------------ADAVKAEAAAAQDKINQEVKKM 157

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L+  + D     +  E+    I+I I   R    F   S    P    V++ +GE+L
Sbjct: 158 AQELNKEITDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPRFKPVVRSVGELL 211

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I++ G+TD     +     NW LS  RA +    L++  G    R+ K+ G A 
Sbjct: 212 KDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KVVGMAS 270

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343
           +   + +D     + NRR++I +E  + 
Sbjct: 271 NNPIVPNDSPENRARNRRVEIAIEQGKA 298


>gi|24373103|ref|NP_717146.1| flagellar motor protein MotB [Shewanella oneidensis MR-1]
 gi|24347292|gb|AAN54590.1|AE015599_2 sodium-driven polar flagellar protein PomB [Shewanella oneidensis
           MR-1]
          Length = 308

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 124/336 (36%), Gaps = 54/336 (16%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
              +  P     W   +AD M++LM FF+++   +  D    K I           N   
Sbjct: 2   AKCNCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVE 61

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +   +  P R     I++   +   +T+  +DL+ G  +     Q+   + 
Sbjct: 62  VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQ 121

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                S  ++  ++++  ++   +D                                  +
Sbjct: 122 RGGEASATAQETEDAVKAEAAAAQD----------------------------------K 147

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    KK++  L+  +AD     +  E+    I+I I   R    F   S    P    V
Sbjct: 148 INQQVKKMAQELNQEIADGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309
           ++ +GE+L     +I++ G+TD     +     NW LS  RA +   VL++  G    R+
Sbjct: 202 VRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRM 261

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
            K+ G A +   + +D     + NRR++I +E  + 
Sbjct: 262 -KVVGMASNNPIVPNDSPDNRARNRRVEIAIEQGKA 296


>gi|213647163|ref|ZP_03377216.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 275

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 58  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 117

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 118 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 177

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 178 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 236



 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+I+ +       I +YF       +T    I + ++P      +    
Sbjct: 1   MTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQ 60

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             +     N  +LK      +    R + +    S+ +      +      ++G  +   
Sbjct: 61  QGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQII 120

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMK 187
               + + K  +  + P  ++ + A+ 
Sbjct: 121 DSQNRPMFKTGSAEVEPYMRDILRAIA 147


>gi|126730120|ref|ZP_01745932.1| putative chemotaxis MotB protein [Sagittula stellata E-37]
 gi|126709500|gb|EBA08554.1| putative chemotaxis MotB protein [Sagittula stellata E-37]
          Length = 279

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 125/327 (38%), Gaps = 58/327 (17%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            IIIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K I  YF    
Sbjct: 9   PIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYF-TPT 67

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
             +   S G           ++N +        + N                        
Sbjct: 68  IAMARVSGGGDGPLGGDSVFAENTLPRMGSGSTSLNPA---------------------- 105

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                      N       +G     + D++++  + E   +                  
Sbjct: 106 ---------ASNGEQGTFTEGDTGDDAADMDEAFKEVEEMLMGRGG-------------- 142

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                       +VAD +++ ++   T  G++I   +  +  +F    + P P    +  
Sbjct: 143 ----------ESMVADELMEHIVTRVTDEGLVIEFFESEHARLF-TGDATPTPLLEDLAL 191

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            +       T  ++I GH  +SP       +W +S  RA +  ++L   GV E+R+ +++
Sbjct: 192 VLARASEVVTNQMAIEGHVASSPLVLARDPSWDVSGLRASAFRELLTGEGVPENRVKRVT 251

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
            +A        +PMN+ N RI+++   
Sbjct: 252 SYADREP-AHKNPMNARNNRIEVVFLR 277


>gi|300904777|ref|ZP_07122605.1| chemotaxis protein MotB [Escherichia coli MS 84-1]
 gi|301305233|ref|ZP_07211330.1| chemotaxis protein MotB [Escherichia coli MS 124-1]
 gi|300403291|gb|EFJ86829.1| chemotaxis protein MotB [Escherichia coli MS 84-1]
 gi|300839439|gb|EFK67199.1| chemotaxis protein MotB [Escherichia coli MS 124-1]
 gi|315257277|gb|EFU37245.1| chemotaxis protein MotB [Escherichia coli MS 85-1]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMCLSDRGPDDAVNRRISLLVLNKQA 269


>gi|121600109|ref|YP_994715.1| flagellar motor protein [Burkholderia mallei SAVP1]
 gi|124386114|ref|YP_001027662.1| putative chemotaxis MotB protein [Burkholderia mallei NCTC 10229]
 gi|121228919|gb|ABM51437.1| flagellar motor protein [Burkholderia mallei SAVP1]
          Length = 245

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNI 211
             +    +          ++        +  L  + + RL DL  K+ + +         
Sbjct: 2   PARPAAPTARRTWPSASRKSEDDALAQAQGSLERREQVRLHDLQVKLMAAIEANPTLRQF 61

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            + +  ++T  G+ I I+D +  PMF  SS    P    +L++IG+ L      I ++GH
Sbjct: 62  KQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDILREIGKTLNDVPNRIIVQGH 121

Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           TDA P+        NW LS DRA ++ + L+  G+ E ++ ++ G A  +    +DP++ 
Sbjct: 122 TDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRVLGLASTQNLNKADPLDP 181

Query: 330 ANRRIDILVEDRQ 342
            NRRI I+V +R+
Sbjct: 182 ENRRISIIVLNRK 194


>gi|209767218|gb|ACI81921.1| chemotaxis protein MotB [Escherichia coli]
 gi|320647103|gb|EFX15936.1| flagellar motor protein MotB [Escherichia coli O157:H- str. 493-89]
 gi|320652386|gb|EFX20684.1| flagellar motor protein MotB [Escherichia coli O157:H- str. H 2687]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|308048595|ref|YP_003912161.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307630785|gb|ADN75087.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 314

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 49/330 (14%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTA 79
                +W   +AD  T+LM FF+++   +  D    K I           N      +  
Sbjct: 11  AAGAPAWMATFADLATLLMCFFVLLLAFSEMDVLKFKQIAGSMKYAFGVQNKVEVKDIPR 70

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              +  ++  P R     I++   + +  T++ ++ + G ++Q    Q    N    ++S
Sbjct: 71  GTSVIAQEFRPGRPDPTPIEVIQQQTVEFTRDMLNYQPGESDQAGGQQNQSGNSRGGTSS 130

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +   +   +  S+                                +      + +L K
Sbjct: 131 QTANQPRAEQSNQSQT-----------------------------RTSASDADNVNELTK 161

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI+  L   + D  ++    E+    I+I I   R    F   S+   P    V+  +G 
Sbjct: 162 KIAQQLEDQILDGAIE---VESLGQQIIIRI---REKGAFPAGSAFLQPRFRPVIHAVGN 215

Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315
           +L     +IS+ GHTD +   N + R NW LS  RA S    L+K  G    R+  + G 
Sbjct: 216 LLKDVPGIISVTGHTDNTTIDNELYRSNWELSTQRAVSVAHELVKVEGFDPGRME-LRGV 274

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343
           A +   +++D       NRR++I +   + 
Sbjct: 275 AENEPLVSNDTWEGRVRNRRVEITINQGKA 304


>gi|170769416|ref|ZP_02903869.1| chemotaxis protein MotB [Escherichia albertii TW07627]
 gi|170121740|gb|EDS90671.1| chemotaxis protein MotB [Escherichia albertii TW07627]
          Length = 308

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 3/166 (1%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239
           E++     + RL+ L   +   +        ++  +  +  + G+ I IID +N PMF  
Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLLQEGLRIQIIDSQNRPMFKI 163

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
            S+   P    +L+ I  VL      IS+ GHTD  P+ N      NW LS +RA ++ +
Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYANGEKGYSNWELSTERANASRR 223

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L   G+ + ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 224 ELAAGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 269



 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +     II+ K+          GSWKI YADFMT +MAFFLVMW+I+ +       I +Y
Sbjct: 2   KNQTHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F       +T    I + ++P      +      + +   N  +LK      + +  R +
Sbjct: 62  FRTPLATAVTGGNRISNSESPIPGGGDDYTQRRGEVNKQPNIEELKKRMEQSRLRKLRGD 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 122 LDQLIESDPKLRALRPHLKIDLLQEGLRIQIIDSQNRPMFKIGSADVEPYMRDILRAIA 180


>gi|293415204|ref|ZP_06657847.1| chemotaxis protein MotB [Escherichia coli B185]
 gi|291432852|gb|EFF05831.1| chemotaxis protein MotB [Escherichia coli B185]
          Length = 308

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|109897648|ref|YP_660903.1| flagellar motor protein MotB [Pseudoalteromonas atlantica T6c]
 gi|109699929|gb|ABG39849.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 123/325 (37%), Gaps = 39/325 (12%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   PKCPPAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I         D     T Q++  +  +  + + + ++ S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +              K    +K    ++       +K      +  K+++ +A+++   
Sbjct: 115 GRQ-------------KQRGEQKGGAAQQTASEQSSAKTTASQEEANKQMKKVAQQLEKE 161

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +       +   +  E+    ++I I   R    F   S+   P+   +L+KIG +LA  
Sbjct: 162 I-------LDGAIEMESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADM 211

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
              I I GH+D+    N + R NW LS  RA +  + L K+ G  E R+  + G A    
Sbjct: 212 PGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRM-AVIGKADTAP 270

Query: 321 KIASDP--MNSANRRIDILVEDRQG 343
            +  D     S NRR++I ++  + 
Sbjct: 271 LLGEDDAQARSRNRRVEIAIKQGKA 295


>gi|209919315|ref|YP_002293399.1| flagellar motor protein MotB [Escherichia coli SE11]
 gi|218554477|ref|YP_002387390.1| flagellar motor protein MotB [Escherichia coli IAI1]
 gi|209912574|dbj|BAG77648.1| chemotaxis protein MotB [Escherichia coli SE11]
 gi|218361245|emb|CAQ98829.1| protein that enables flagellar motor rotation [Escherichia coli
           IAI1]
 gi|324017971|gb|EGB87190.1| chemotaxis protein MotB [Escherichia coli MS 117-3]
          Length = 308

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|311695399|gb|ADP98272.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 246

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVL 216
             S D+E S  + E+  +  LS+        ++R+Q+L +++   +            +L
Sbjct: 12  EASPDIESSQIQIEDEVVDELSETL-----EQRRMQELFQELKEQIKQDETLQEFKDQLL 66

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            + T  G+ I I+D+   PMFD   +     +  +L ++ + L      +SI GHTD++P
Sbjct: 67  IDITDEGLRIQIVDRSGRPMFDSGRAELKYYSQDILFELAKTLGSVNNKLSITGHTDSTP 126

Query: 277 FRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           F       NW LS DRA +A + L+  GV + +I+++ G +   L    DP    NRRI 
Sbjct: 127 FSGRPGYTNWELSADRANTARRALVAGGVRQQQIARVVGLSDSVLFDKEDPNAPVNRRIS 186

Query: 336 ILVEDRQ 342
           I+V +++
Sbjct: 187 IIVLNKK 193


>gi|320178162|gb|EFW53139.1| Flagellar motor rotation protein MotB [Shigella boydii ATCC 9905]
          Length = 308

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   I   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDIDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|162420339|ref|YP_001607210.1| flagellar motor protein MotB [Yersinia pestis Angola]
 gi|162353154|gb|ABX87102.1| chemotaxis MotB protein [Yersinia pestis Angola]
          Length = 421

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|153950639|ref|YP_001400614.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 31758]
 gi|152962134|gb|ABS49595.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 31758]
          Length = 433

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|260868487|ref|YP_003234889.1| MotB protein [Escherichia coli O111:H- str. 11128]
 gi|257764843|dbj|BAI36338.1| MotB protein [Escherichia coli O111:H- str. 11128]
 gi|323180688|gb|EFZ66233.1| chemotaxis protein motB [Escherichia coli 1180]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|22125717|ref|NP_669140.1| flagellar motor protein MotB [Yersinia pestis KIM 10]
 gi|108807851|ref|YP_651767.1| flagellar motor protein MotB [Yersinia pestis Antiqua]
 gi|108812127|ref|YP_647894.1| flagellar motor protein MotB [Yersinia pestis Nepal516]
 gi|149366375|ref|ZP_01888409.1| chemotaxis MotB protein [Yersinia pestis CA88-4125]
 gi|165925475|ref|ZP_02221307.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938485|ref|ZP_02227042.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008640|ref|ZP_02229538.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210582|ref|ZP_02236617.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401678|ref|ZP_02307169.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422628|ref|ZP_02314381.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426350|ref|ZP_02318103.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928797|ref|YP_002346672.1| flagellar motor protein MotB [Yersinia pestis CO92]
 gi|229841656|ref|ZP_04461814.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843773|ref|ZP_04463916.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894516|ref|ZP_04509698.1| chemotaxis MotB protein [Yersinia pestis Pestoides A]
 gi|229902447|ref|ZP_04517566.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|270490373|ref|ZP_06207447.1| flagellar motor protein MotB [Yersinia pestis KIM D27]
 gi|294504144|ref|YP_003568206.1| flagellar motor protein [Yersinia pestis Z176003]
 gi|21958635|gb|AAM85391.1|AE013785_4 lateral flagellar motor protein [Yersinia pestis KIM 10]
 gi|108775775|gb|ABG18294.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|108779764|gb|ABG13822.1| chemotaxis MotB protein [Yersinia pestis Antiqua]
 gi|115347408|emb|CAL20310.1| chemotaxis MotB protein [Yersinia pestis CO92]
 gi|149290749|gb|EDM40824.1| chemotaxis MotB protein [Yersinia pestis CA88-4125]
 gi|165913600|gb|EDR32220.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922584|gb|EDR39735.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165993022|gb|EDR45323.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207762|gb|EDR52242.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958475|gb|EDR55496.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048783|gb|EDR60191.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054705|gb|EDR64509.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680493|gb|EEO76590.1| chemotaxis MotB protein [Yersinia pestis Nepal516]
 gi|229689381|gb|EEO81444.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694119|gb|EEO84167.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229703535|gb|EEO90552.1| chemotaxis MotB protein [Yersinia pestis Pestoides A]
 gi|262366194|gb|ACY62751.1| flagellar motor protein [Yersinia pestis D182038]
 gi|270338877|gb|EFA49654.1| flagellar motor protein MotB [Yersinia pestis KIM D27]
 gi|294354603|gb|ADE64944.1| flagellar motor protein [Yersinia pestis Z176003]
          Length = 427

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|51596729|ref|YP_070920.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 32953]
 gi|186895791|ref|YP_001872903.1| flagellar motor protein MotB [Yersinia pseudotuberculosis PB1/+]
 gi|51590011|emb|CAH21644.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 32953]
 gi|186698817|gb|ACC89446.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 439

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|56695114|ref|YP_165461.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3]
 gi|56676851|gb|AAV93517.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3]
          Length = 285

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 111/309 (35%), Gaps = 58/309 (18%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFF++MW++NAT +  +K +  YF                      
Sbjct: 34  AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYF---------------------- 71

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            S    I+            D      ++          +               + R  
Sbjct: 72  -SDSIPINPVSGGGDGSFGGDSMF---SENAMVTTGTGGVNRRRADADRSRGSTGVDRQG 127

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
            +G+ L +   LE ++                                      LV++ +
Sbjct: 128 GEGEPLEEFKTLEAALQGRGG-------------------------------ESLVSEQL 156

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            K ++   T  G+++ +I    +P+F+ +S  P      + + +       +  I++ GH
Sbjct: 157 RKHIVTRVTDEGLIVELISTDESPLFETNSDRPTQLMKELAKVVVRAADMVSNGIAVGGH 216

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
             A P        W LS  RA     +    G+ E+RI +++G A  +L    +PM + N
Sbjct: 217 IRAHPVVLARNPVWELSTARAERTRVLFEGLGMKEERIQRVTGHADRKLTDP-NPMAARN 275

Query: 332 RRIDILVED 340
            RI+I+   
Sbjct: 276 DRIEIIFLR 284


>gi|320177401|gb|EFW52402.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC
           74-1112]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|24113274|ref|NP_707784.1| flagellar motor protein MotB [Shigella flexneri 2a str. 301]
 gi|30063341|ref|NP_837512.1| flagellar motor protein MotB [Shigella flexneri 2a str. 2457T]
 gi|110805869|ref|YP_689389.1| flagellar motor protein MotB [Shigella flexneri 5 str. 8401]
 gi|24052278|gb|AAN43491.1| chemotaxis protein MotB [Shigella flexneri 2a str. 301]
 gi|30041593|gb|AAP17321.1| chemotaxis protein MotB [Shigella flexneri 2a str. 2457T]
 gi|110615417|gb|ABF04084.1| flagellar motor protein [Shigella flexneri 5 str. 8401]
 gi|281601336|gb|ADA74320.1| Chemotaxis protein MotB [Shigella flexneri 2002017]
 gi|332757207|gb|EGJ87544.1| chemotaxis protein motB [Shigella flexneri 2747-71]
 gi|332757449|gb|EGJ87784.1| chemotaxis protein motB [Shigella flexneri K-671]
 gi|332766620|gb|EGJ96824.1| motB protein, enables flagellar motor rotation, linking torque
           machinery to cell wall [Shigella flexneri 2930-71]
 gi|333004150|gb|EGK23682.1| chemotaxis protein motB [Shigella flexneri K-272]
 gi|333017634|gb|EGK36946.1| chemotaxis protein motB [Shigella flexneri K-304]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|45441604|ref|NP_993143.1| flagellar motor protein MotB [Yersinia pestis biovar Microtus str.
           91001]
 gi|145599064|ref|YP_001163140.1| flagellar motor protein MotB [Yersinia pestis Pestoides F]
 gi|45436465|gb|AAS62020.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|145210760|gb|ABP40167.1| chemotaxis MotB protein [Yersinia pestis Pestoides F]
 gi|320014810|gb|ADV98381.1| chemotaxis MotB protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 433

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|170741247|ref|YP_001769902.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195521|gb|ACA17468.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 277

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 116/326 (35%), Gaps = 63/326 (19%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN 75
           + ++       +    W + +AD M +LM+FF+++   +  D    +A+   F + FG N
Sbjct: 1   MARRKR--GGAHGGHGWFVTFADLMALLMSFFVMVCAYSTQDQRKLQAVAGSFRDAFGVN 58

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
             +   GI ++   P  +            +   + D     T      +  +N +    
Sbjct: 59  KESRFNGIIEKDGLPSATRL--------RDLRPVTPDKASDRTTPPLPDEVFDNGVPQNG 110

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                     SL                                         ++ LQDL
Sbjct: 111 FRDGFGLAMASL-----------------------------------------RQALQDL 129

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                          + K VL   T  G+ +S++DQ    MF   S+ P   T  VL+++
Sbjct: 130 PD----------IAELSKNVLIHETARGLDVSLVDQDGRSMFPDGSTRPNDRTRQVLERL 179

Query: 256 GEVLAHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              +   +  I+I G+T A  P        W LS  RA S  ++L  +GV ++R + +SG
Sbjct: 180 APAIRRMSNKIAISGYTAATRPGLRAPAPPWELSAGRAISVREILASNGVPDERFTVVSG 239

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
            A        +P  +ANRR+ I +  
Sbjct: 240 KADTEPLFPDNPYIAANRRVTITLLR 265


>gi|331673414|ref|ZP_08374182.1| chemotaxis protein MotB [Escherichia coli TA280]
 gi|331069612|gb|EGI40999.1| chemotaxis protein MotB [Escherichia coli TA280]
          Length = 308

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|15802301|ref|NP_288326.1| flagellar motor protein MotB [Escherichia coli O157:H7 EDL933]
 gi|15831853|ref|NP_310626.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. Sakai]
 gi|16129841|ref|NP_416403.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108729|ref|AP_002509.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. W3110]
 gi|157158423|ref|YP_001463195.1| flagellar motor protein MotB [Escherichia coli E24377A]
 gi|157161361|ref|YP_001458679.1| flagellar motor protein MotB [Escherichia coli HS]
 gi|168757929|ref|ZP_02782936.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401]
 gi|168762313|ref|ZP_02787320.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501]
 gi|168770876|ref|ZP_02795883.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486]
 gi|168776560|ref|ZP_02801567.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196]
 gi|168783193|ref|ZP_02808200.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076]
 gi|168789758|ref|ZP_02814765.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869]
 gi|168801871|ref|ZP_02826878.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508]
 gi|170019766|ref|YP_001724720.1| flagellar motor protein MotB [Escherichia coli ATCC 8739]
 gi|170081544|ref|YP_001730864.1| hypothetical protein ECDH10B_2030 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170684155|ref|YP_001743353.1| flagellar motor protein MotB [Escherichia coli SMS-3-5]
 gi|188492393|ref|ZP_02999663.1| chemotaxis protein MotB [Escherichia coli 53638]
 gi|191168098|ref|ZP_03029897.1| chemotaxis protein MotB [Escherichia coli B7A]
 gi|193065441|ref|ZP_03046510.1| chemotaxis protein MotB [Escherichia coli E22]
 gi|193069870|ref|ZP_03050819.1| chemotaxis protein MotB [Escherichia coli E110019]
 gi|194429327|ref|ZP_03061853.1| chemotaxis protein MotB [Escherichia coli B171]
 gi|194439077|ref|ZP_03071160.1| chemotaxis protein MotB [Escherichia coli 101-1]
 gi|195939593|ref|ZP_03084975.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. EC4024]
 gi|208810604|ref|ZP_03252480.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206]
 gi|208816679|ref|ZP_03257799.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045]
 gi|208819881|ref|ZP_03260201.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042]
 gi|209397424|ref|YP_002270973.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115]
 gi|217329015|ref|ZP_03445096.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588]
 gi|218695455|ref|YP_002403122.1| flagellar motor protein MotB [Escherichia coli 55989]
 gi|218705389|ref|YP_002412908.1| flagellar motor protein MotB [Escherichia coli UMN026]
 gi|238901104|ref|YP_002926900.1| protein that enables flagellar motor rotation [Escherichia coli
           BW2952]
 gi|253773154|ref|YP_003035985.1| flagellar motor protein MotB [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161949|ref|YP_003045057.1| flagellar motor protein MotB [Escherichia coli B str. REL606]
 gi|254793513|ref|YP_003078350.1| flagellar motor protein MotB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017907|ref|ZP_05431772.1| flagellar motor protein MotB [Shigella sp. D9]
 gi|260844299|ref|YP_003222077.1| MotB protein [Escherichia coli O103:H2 str. 12009]
 gi|260855829|ref|YP_003229720.1| MotB protein [Escherichia coli O26:H11 str. 11368]
 gi|261227610|ref|ZP_05941891.1| protein that enables flagellar motor rotation [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258224|ref|ZP_05950757.1| MotB protein [Escherichia coli O157:H7 str. FRIK966]
 gi|291283071|ref|YP_003499889.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615]
 gi|293405381|ref|ZP_06649373.1| motB [Escherichia coli FVEC1412]
 gi|293446276|ref|ZP_06662698.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|297517349|ref|ZP_06935735.1| flagellar motor protein MotB [Escherichia coli OP50]
 gi|298381025|ref|ZP_06990624.1| chemotaxis protein motB [Escherichia coli FVEC1302]
 gi|300819874|ref|ZP_07100059.1| chemotaxis protein MotB [Escherichia coli MS 107-1]
 gi|300822336|ref|ZP_07102477.1| chemotaxis protein MotB [Escherichia coli MS 119-7]
 gi|300899142|ref|ZP_07117423.1| chemotaxis protein MotB [Escherichia coli MS 198-1]
 gi|300924982|ref|ZP_07140907.1| chemotaxis protein MotB [Escherichia coli MS 182-1]
 gi|300928923|ref|ZP_07144427.1| chemotaxis protein MotB [Escherichia coli MS 187-1]
 gi|300956597|ref|ZP_07168876.1| chemotaxis protein MotB [Escherichia coli MS 175-1]
 gi|301029341|ref|ZP_07192438.1| chemotaxis protein MotB [Escherichia coli MS 196-1]
 gi|301327680|ref|ZP_07220887.1| chemotaxis protein MotB [Escherichia coli MS 78-1]
 gi|301645593|ref|ZP_07245522.1| chemotaxis protein MotB [Escherichia coli MS 146-1]
 gi|307138554|ref|ZP_07497910.1| flagellar motor protein MotB [Escherichia coli H736]
 gi|307314199|ref|ZP_07593809.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|309796000|ref|ZP_07690413.1| chemotaxis protein MotB [Escherichia coli MS 145-7]
 gi|312969933|ref|ZP_07784116.1| chemotaxis protein motB [Escherichia coli 1827-70]
 gi|331642507|ref|ZP_08343642.1| chemotaxis protein MotB [Escherichia coli H736]
 gi|331653299|ref|ZP_08354304.1| chemotaxis protein MotB [Escherichia coli M718]
 gi|331668586|ref|ZP_08369434.1| chemotaxis protein MotB [Escherichia coli TA271]
 gi|331677774|ref|ZP_08378449.1| chemotaxis protein MotB [Escherichia coli H591]
 gi|332278938|ref|ZP_08391351.1| flagellar motor rotation protein [Shigella sp. D9]
 gi|84028148|sp|P0AF07|MOTB_ECO57 RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|84028149|sp|P0AF06|MOTB_ECOLI RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|12515953|gb|AAG56879.1|AE005411_3 enables flagellar motor rotation, linking torque machinery to cell
           wall [Escherichia coli O157:H7 str. EDL933]
 gi|146883|gb|AAA24178.1| chemotaxis protein MotB [Escherichia coli]
 gi|1736548|dbj|BAA15710.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K12 substr. W3110]
 gi|1788198|gb|AAC74959.1| protein that enables flagellar motor rotation [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13362067|dbj|BAB36022.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. Sakai]
 gi|157067041|gb|ABV06296.1| chemotaxis protein MotB [Escherichia coli HS]
 gi|157080453|gb|ABV20161.1| chemotaxis protein MotB [Escherichia coli E24377A]
 gi|169754694|gb|ACA77393.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|169889379|gb|ACB03086.1| MotB [Escherichia coli str. K-12 substr. DH10B]
 gi|170521873|gb|ACB20051.1| chemotaxis protein MotB [Escherichia coli SMS-3-5]
 gi|187768100|gb|EDU31944.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196]
 gi|188487592|gb|EDU62695.1| chemotaxis protein MotB [Escherichia coli 53638]
 gi|188999462|gb|EDU68448.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076]
 gi|189355159|gb|EDU73578.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401]
 gi|189360307|gb|EDU78726.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486]
 gi|189367322|gb|EDU85738.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501]
 gi|189370705|gb|EDU89121.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869]
 gi|189376024|gb|EDU94440.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508]
 gi|190901896|gb|EDV61646.1| chemotaxis protein MotB [Escherichia coli B7A]
 gi|192926846|gb|EDV81471.1| chemotaxis protein MotB [Escherichia coli E22]
 gi|192956770|gb|EDV87224.1| chemotaxis protein MotB [Escherichia coli E110019]
 gi|194412634|gb|EDX28930.1| chemotaxis protein MotB [Escherichia coli B171]
 gi|194422036|gb|EDX38040.1| chemotaxis protein MotB [Escherichia coli 101-1]
 gi|208725120|gb|EDZ74827.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206]
 gi|208731022|gb|EDZ79711.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045]
 gi|208740004|gb|EDZ87686.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042]
 gi|209158824|gb|ACI36257.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115]
 gi|209767220|gb|ACI81922.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767222|gb|ACI81923.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767224|gb|ACI81924.1| chemotaxis protein MotB [Escherichia coli]
 gi|209767226|gb|ACI81925.1| chemotaxis protein MotB [Escherichia coli]
 gi|217318362|gb|EEC26789.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588]
 gi|218352187|emb|CAU97928.1| protein that enables flagellar motor rotation [Escherichia coli
           55989]
 gi|218432486|emb|CAR13379.1| protein that enables flagellar motor rotation [Escherichia coli
           UMN026]
 gi|238863319|gb|ACR65317.1| protein that enables flagellar motor rotation [Escherichia coli
           BW2952]
 gi|242377610|emb|CAQ32366.1| MotB protein, enables flagellar motor rotation, linking torque
           machinery to cell wall, subunit of Flagellar Motor
           Complex and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324198|gb|ACT28800.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973850|gb|ACT39521.1| flagellar motor protein MotB [Escherichia coli B str. REL606]
 gi|253978044|gb|ACT43714.1| flagellar motor protein MotB [Escherichia coli BL21(DE3)]
 gi|254592913|gb|ACT72274.1| protein that enables flagellar motor rotation [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754478|dbj|BAI25980.1| MotB protein [Escherichia coli O26:H11 str. 11368]
 gi|257759446|dbj|BAI30943.1| MotB protein [Escherichia coli O103:H2 str. 12009]
 gi|260448988|gb|ACX39410.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|290762944|gb|ADD56905.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615]
 gi|291323106|gb|EFE62534.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|291427589|gb|EFF00616.1| motB [Escherichia coli FVEC1412]
 gi|298278467|gb|EFI19981.1| chemotaxis protein motB [Escherichia coli FVEC1302]
 gi|299877767|gb|EFI85978.1| chemotaxis protein MotB [Escherichia coli MS 196-1]
 gi|300316579|gb|EFJ66363.1| chemotaxis protein MotB [Escherichia coli MS 175-1]
 gi|300357232|gb|EFJ73102.1| chemotaxis protein MotB [Escherichia coli MS 198-1]
 gi|300418857|gb|EFK02168.1| chemotaxis protein MotB [Escherichia coli MS 182-1]
 gi|300463077|gb|EFK26570.1| chemotaxis protein MotB [Escherichia coli MS 187-1]
 gi|300525219|gb|EFK46288.1| chemotaxis protein MotB [Escherichia coli MS 119-7]
 gi|300527571|gb|EFK48633.1| chemotaxis protein MotB [Escherichia coli MS 107-1]
 gi|300845775|gb|EFK73535.1| chemotaxis protein MotB [Escherichia coli MS 78-1]
 gi|301076125|gb|EFK90931.1| chemotaxis protein MotB [Escherichia coli MS 146-1]
 gi|306906168|gb|EFN36686.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|308120450|gb|EFO57712.1| chemotaxis protein MotB [Escherichia coli MS 145-7]
 gi|309702112|emb|CBJ01427.1| chemotaxis protein MotB (motility protein B) [Escherichia coli ETEC
           H10407]
 gi|310338218|gb|EFQ03307.1| chemotaxis protein motB [Escherichia coli 1827-70]
 gi|315061195|gb|ADT75522.1| protein that enables flagellar motor rotation [Escherichia coli W]
 gi|315136532|dbj|BAJ43691.1| chemotaxis protein motB [Escherichia coli DH1]
 gi|320188589|gb|EFW63251.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. EC1212]
 gi|320198585|gb|EFW73185.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B]
 gi|320641743|gb|EFX11131.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. G5101]
 gi|320657987|gb|EFX25749.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320658560|gb|EFX26254.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668458|gb|EFX35285.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. LSU-61]
 gi|323152620|gb|EFZ38896.1| chemotaxis protein motB [Escherichia coli EPECa14]
 gi|323174594|gb|EFZ60215.1| chemotaxis protein motB [Escherichia coli LT-68]
 gi|323186334|gb|EFZ71684.1| chemotaxis protein motB [Escherichia coli 1357]
 gi|323378228|gb|ADX50496.1| OmpA/MotB domain protein [Escherichia coli KO11]
 gi|323937148|gb|EGB33428.1| OmpA family protein [Escherichia coli E1520]
 gi|323940442|gb|EGB36633.1| OmpA family protein [Escherichia coli E482]
 gi|323961944|gb|EGB57543.1| OmpA family protein [Escherichia coli H489]
 gi|323972601|gb|EGB67804.1| OmpA family protein [Escherichia coli TA007]
 gi|324118949|gb|EGC12838.1| OmpA family protein [Escherichia coli E1167]
 gi|326342267|gb|EGD66048.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1044]
 gi|326343818|gb|EGD67580.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1125]
 gi|331039305|gb|EGI11525.1| chemotaxis protein MotB [Escherichia coli H736]
 gi|331049397|gb|EGI21469.1| chemotaxis protein MotB [Escherichia coli M718]
 gi|331063780|gb|EGI35691.1| chemotaxis protein MotB [Escherichia coli TA271]
 gi|331074234|gb|EGI45554.1| chemotaxis protein MotB [Escherichia coli H591]
 gi|332089624|gb|EGI94726.1| chemotaxis protein motB [Shigella boydii 5216-82]
 gi|332101290|gb|EGJ04636.1| flagellar motor rotation protein [Shigella sp. D9]
 gi|332343616|gb|AEE56950.1| chemotaxis protein MotB [Escherichia coli UMNK88]
          Length = 308

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|170023989|ref|YP_001720494.1| flagellar motor protein MotB [Yersinia pseudotuberculosis YPIII]
 gi|169750523|gb|ACA68041.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 451

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
           +Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|323968311|gb|EGB63718.1| OmpA family protein [Escherichia coli M863]
 gi|327253019|gb|EGE64673.1| chemotaxis protein motB [Escherichia coli STEC_7v]
          Length = 308

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|194434087|ref|ZP_03066356.1| chemotaxis protein MotB [Shigella dysenteriae 1012]
 gi|300951513|ref|ZP_07165348.1| chemotaxis protein MotB [Escherichia coli MS 116-1]
 gi|194417631|gb|EDX33731.1| chemotaxis protein MotB [Shigella dysenteriae 1012]
 gi|300449263|gb|EFK12883.1| chemotaxis protein MotB [Escherichia coli MS 116-1]
 gi|332095082|gb|EGJ00116.1| chemotaxis protein motB [Shigella dysenteriae 155-74]
          Length = 308

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  GV   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGVDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|315125812|ref|YP_004067815.1| flagellar motor protein MotB [Pseudoalteromonas sp. SM9913]
 gi|315014326|gb|ADT67664.1| flagellar motor protein MotB [Pseudoalteromonas sp. SM9913]
          Length = 306

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 114/305 (37%), Gaps = 35/305 (11%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  QN  E     K    I    T    +     T Q++  +  +  + + +  + S  
Sbjct: 55  AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     +   G+    S ++               +    ++   ++++ DL KKI+  
Sbjct: 115 GRQEQRGEKRGGESSSTSEEV---------------AAATAVSAADQEQINDLVKKIAQQ 159

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + D  ++    E+    I+I I   R    F   S+   P+   ++Q IG +L   
Sbjct: 160 LEKQIIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPQFKPIIQDIGRLLKDV 213

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
              I++ GHTD     N    +NW LS  RA +    L K  G  + R+  + G A  R 
Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVPGFDKTRMM-VVGRAETRP 272

Query: 321 KIASD 325
            + +D
Sbjct: 273 LVPND 277


>gi|323948225|gb|EGB44213.1| OmpA family protein [Escherichia coli H120]
          Length = 308

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV +++ 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKEA 269


>gi|116694193|ref|YP_728404.1| flagellar motor protein MotB [Ralstonia eutropha H16]
 gi|113528692|emb|CAJ95039.1| Chemotaxis protein [Ralstonia eutropha H16]
          Length = 321

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVL 216
                L K  +        P  +++    +  +RL+ L +++   +    V       +L
Sbjct: 87  GGQDALRKDGDTMRARTNEPSDEQRRNEQQEAQRLRALKQRLEQIIENNPVLRQFRPQLL 146

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            + T  G+ I I+D +N PMF   S+        +L++IG VL      +S+ GHTDA+ 
Sbjct: 147 LDITSEGLRIQILDTQNRPMFRTGSATVETYMRTILREIGPVLNELPNKVSLSGHTDAAN 206

Query: 277 FRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           + N      NW LS DRA ++ + L+  G+ E ++ ++ G A        D +   NRRI
Sbjct: 207 YSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKEDLLAPVNRRI 266

Query: 335 DILVEDRQG 343
            I+V + + 
Sbjct: 267 SIVVLNHKA 275



 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +  +D   II ++      P+   SWKI YADFMT +MA FLV+W++++ +  T + I +
Sbjct: 2   SSAHDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAE 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YF    K  +   +      +      Q+ +    D    + +        N++++ QRL
Sbjct: 62  YFRMPLKVAIVGGEKSSQTPSVIPGGGQDALRKDGDTMRARTNEPSDEQRRNEQQEAQRL 121

Query: 128 E 128
            
Sbjct: 122 R 122


>gi|262402758|ref|ZP_06079319.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586]
 gi|262351540|gb|EEZ00673.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586]
          Length = 304

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 120/319 (37%), Gaps = 47/319 (14%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFD 85
           W   +AD M++LM FF+++   +  D    K I           N      +     I  
Sbjct: 2   WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61

Query: 86  EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           ++  P R     ID+ + +   IT+ +++ + G +++    QR    +    +++ S   
Sbjct: 62  QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGDSDRAGGNQRDSGKLTGGQSAESSTQE 121

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +   D ++ +                             A    ++++ +A+ I   L
Sbjct: 122 NQNTQSDMQQQQ-----------------------------AKAMSEQMETVAESIKKAL 152

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           S  +    ++    E     I I I   R    F + S+   P+   ++++I +++    
Sbjct: 153 SREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIP 206

Query: 264 EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             + + GHTD       + R NW LS  RA S  Q + K    + +  ++ G A  +   
Sbjct: 207 GKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQRLQVRGMADTQPLG 266

Query: 323 ASDPMNSA--NRRIDILVE 339
            +D       NRR++I + 
Sbjct: 267 PNDTEAQRALNRRVEISIL 285


>gi|163854227|ref|YP_001642270.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|218533172|ref|YP_002423988.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240141687|ref|YP_002966167.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1]
 gi|163665832|gb|ABY33199.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
 gi|218525475|gb|ACK86060.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240011664|gb|ACS42890.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1]
          Length = 277

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 61/321 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
                  +    W + +AD M +LM+FF+++   +  D    + +     + FG N  + 
Sbjct: 3   KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI + +  P       +                                         
Sbjct: 63  FAGILESEGIPTADKFKHLR---------------------------------------- 82

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                       E+  D      ++  ++        P +  +  A   ++ +QD+ +  
Sbjct: 83  --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+    R G+ +SI+DQ    MF + SS P   T  +L+++   L
Sbjct: 134 E----------LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTL 183

Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I++ G T    P        W LS +RA S   VL  +G+ +DR + ++G A  
Sbjct: 184 MKLPNRIAVTGFTATTRPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADT 243

Query: 319 RLKIASDPMNSANRRIDILVE 339
                 +P  +ANRR+ + + 
Sbjct: 244 EPMFPDNPYLAANRRVTVTLL 264


>gi|323977926|gb|EGB73012.1| OmpA family protein [Escherichia coli TW10509]
          Length = 308

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|293395565|ref|ZP_06639848.1| chemotaxis MotB protein [Serratia odorifera DSM 4582]
 gi|291421884|gb|EFE95130.1| chemotaxis MotB protein [Serratia odorifera DSM 4582]
          Length = 330

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +   L     +       + RL  L +++   +        ++  +L      G+
Sbjct: 86  GDDPTQLEGLVRKQLDSPEKQAEELRLNKLRERLDELIESDPRLKALRPHLLINMMDEGL 145

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--AR 282
            I IID +N PMF   S+        +L+ I  +L      IS+ GHTD  P+       
Sbjct: 146 RIQIIDSQNRPMFTTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDLPYATGERYY 205

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NRRI ILV ++Q
Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITILVLNKQ 265



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 4/191 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + +  +I+ +K       ++ GSWKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 2   KQNHPVILVRKRKAHQVAHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +T       E +P      +   L        +S + +       K  +RL+ 
Sbjct: 62  RTPLKVALTTGNKSSSESSPIPGGGDDPTQLEGLVRKQLDSPEKQAEELRLNKLRERLDE 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            I   S+ +      + L    ++G  +       + +    +  +    ++ + A+   
Sbjct: 122 LI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFTTGSAQVESYMRDILRAIA-- 177

Query: 190 KRLQDLAKKIS 200
             L DL  KIS
Sbjct: 178 PILNDLPNKIS 188


>gi|74311761|ref|YP_310180.1| flagellar motor protein MotB [Shigella sonnei Ss046]
 gi|73855238|gb|AAZ87945.1| MotB [Shigella sonnei Ss046]
          Length = 308

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G  +  S         +       ++K+  +   +K+  Q   +
Sbjct: 57  QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEDLKKRMEQSRLR 116

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           K+   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 117 KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDIL 176

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      IS+ GHTD  P+ +      NW LS DRA ++ + LM  G+   ++ 
Sbjct: 177 RVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|311105916|ref|YP_003978769.1| motility protein B 1 [Achromobacter xylosoxidans A8]
 gi|310760605|gb|ADP16054.1| motility protein B 1 [Achromobacter xylosoxidans A8]
          Length = 330

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               +S    S            E  + + +   +           + + RL++L K++ 
Sbjct: 72  AGGPSSSAETSAVPGGGSDPLRSEGDVRRAQGNRVEAQPMGD-AERREQHRLENLKKRLE 130

Query: 201 STLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           + +    V  +    +L + T  G+ I IID +N PMF    +   P    +L+++G VL
Sbjct: 131 NVIETSPVLKSFRPQLLIDLTTEGLRIQIIDNQNRPMFATGRADVQPYMRDILRELGPVL 190

Query: 260 AHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                 +SI GHTDAS +     A  NW LS DRA ++ Q L+  G++E ++ +I G + 
Sbjct: 191 NELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNESKVLRIQGLSS 250

Query: 318 HRLKIASDPMNSANRRIDILVEDR 341
               +  DP  + NRRI ++V ++
Sbjct: 251 SMSLVKDDPYAAVNRRISLVVLNQ 274


>gi|167466606|ref|ZP_02331310.1| flagellar motor protein MotB [Yersinia pestis FV-1]
          Length = 427

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 5/211 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194
            Q +E+ +  L      G     ST        +    +  + K+      R++  RL  
Sbjct: 57  PQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +K+   +        ++  +L      G+ I IID +N PMF   S+   P    +L+
Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      +S+ GHTD  P+        NW LS DRA ++ + L+  G+ E +I +
Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + G A           +  NRRI ILV ++Q
Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267



 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +N   I++KK+       +  GSWKI YA  MT +MAFFL    +  +       I +Y
Sbjct: 3   HQNHPVILVKKRKTKHGAAHYGGSWKIAYAKVMTAMMAFFLGAVRLAVSSPQELPQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T+        +P      +      +     NS + +       K  ++L+
Sbjct: 63  FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I   S+ +      + L    ++G  +       + + K  +  + P  ++ + A+  
Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179

Query: 189 KKRLQDLAKKIS 200
              L D+  K+S
Sbjct: 180 -PILNDIPNKLS 190


>gi|188579878|ref|YP_001923323.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179343376|gb|ACB78788.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 470

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 2/270 (0%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            +   +    +      +++P   + Q+  +      +   S +       +  +  R  
Sbjct: 198 LDARAQTGTPSKAKEAQKESPKATARQSLHEAMRQAGVKLASAEPMPLEAPKSVEPARPV 257

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 +++             +E      +   L K+  +      P    ++      
Sbjct: 258 EPTKPAADAVPETGAPEIKALPTEGKPTQPEPQRLAKA--EVPAVKEPAAGADQPAKAAE 315

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              L  L  +I+  +  L        +    T  G+LISI D+ N  MF   S+ P P+ 
Sbjct: 316 TAALSALKAEIARAVPSLPNSAPAPHLEVRRTGEGVLISITDEINFSMFGIGSAEPTPKV 375

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +  L++I ++L      I +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E R
Sbjct: 376 VKALERIAKILNSRPGRIVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEAR 435

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           I +I G+A  + +IA+DP  + NRRI+IL+
Sbjct: 436 IERIEGYADRQPRIAADPKAAENRRIEILL 465



 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 4/180 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+   III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   EHAHEIIIIKRHGDHEDGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D Q+ P   + +      D    +   D      ++ ++    +
Sbjct: 63  NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKADAAGAPGSRARESALFQ 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+                    +  +            + F P   +   L  +R
Sbjct: 122 DPYAVLAKLAAEAEAGPEAASADAAALEAGQPG--VAGGETGRDPFDPLYWQVAALPRQR 179


>gi|294675563|ref|YP_003576178.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003]
 gi|294474383|gb|ADE83771.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003]
          Length = 283

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 126/337 (37%), Gaps = 65/337 (19%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            +    +IIK+K  +    ++ G+WK+ YADF+T +MAFFL+MW++NAT +  +K     
Sbjct: 4   HDGVAPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRK----- 58

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                        GI D  NP    ++                + ++         Q   
Sbjct: 59  -------------GIADYFNPTIPINRISGGGEGAFGGDSVFSEDQVAQNGTGASGQMPT 105

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                                                    EE          K    + 
Sbjct: 106 -----------------------------------------EERQARGDSGAAKEEQKQD 124

Query: 189 KKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +     +AK+I   LS      +V++ + + ++ + T  G+++   D  + P+F   ++ 
Sbjct: 125 QAEFDRMAKEIEKALSATSGESMVSEQLARHIVTKVTDEGLIVEFFDLEDEPLFRPDTAE 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P P    +   +  V   +   ++I GHT + P        W LS +RA     ++  +G
Sbjct: 185 PEPILGEIAGMLTRVFGLTKNNVAINGHTRSYPSMLRTNPVWDLSSERAQRMRILMETAG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
               R+ ++SGFA  +  + +  M+  N R+++++  
Sbjct: 245 FDAARLQRVSGFADRKPAVETR-MSVRNNRLELILLR 280


>gi|256022446|ref|ZP_05436311.1| flagellar motor protein MotB [Escherichia sp. 4_1_40B]
 gi|300917528|ref|ZP_07134185.1| chemotaxis protein MotB [Escherichia coli MS 115-1]
 gi|300415233|gb|EFJ98543.1| chemotaxis protein MotB [Escherichia coli MS 115-1]
          Length = 308

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLWKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|260598378|ref|YP_003210949.1| flagellar motor protein MotB [Cronobacter turicensis z3032]
 gi|260217555|emb|CBA31774.1| Chemotaxis protein motB [Cronobacter turicensis z3032]
          Length = 310

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK- 213
            D       +     +        + +++     + RLQ L   +   +        ++ 
Sbjct: 80  SDSPIPGGGDDVTQTQGEVKKQEPNIDELKKRMERNRLQKLRGDLDQLIEADPKLRALRP 139

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            +  +  + G+ I IID +N PMF   S+   P    +L+ I  VL      +S+ GHTD
Sbjct: 140 HLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTD 199

Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
             P+ N      NW LS DRA S+ + L+  G+ + ++ ++ G A            + N
Sbjct: 200 DFPYANGERGYSNWELSADRANSSRRELVIGGLDDGKVLRVVGMAATMRLAEKGANEALN 259

Query: 332 RRIDILVEDRQ 342
           RRI +LV ++Q
Sbjct: 260 RRISLLVLNKQ 270



 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 1/179 (0%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            N   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 4   SNHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYF 63

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                  +T    I D  +P      +      +    + ++D       + +  +   +
Sbjct: 64  RTPLSAAITGGHRIADSDSPIPGGGDDVTQTQGEVKKQEPNIDELKKRMERNRLQKLRGD 123

Query: 130 NIFYLSNSQQSEHCKNSLT-RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               +    +    +  L     ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 124 LDQLIEADPKLRALRPHLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA 182


>gi|313650105|gb|EFS14518.1| chemotaxis protein motB [Shigella flexneri 2a str. 2457T]
 gi|332756040|gb|EGJ86393.1| chemotaxis protein motB [Shigella flexneri 4343-70]
 gi|333017760|gb|EGK37067.1| chemotaxis protein motB [Shigella flexneri K-227]
          Length = 275

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 58  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 117

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 118 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 177

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 178 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236


>gi|156933520|ref|YP_001437436.1| flagellar motor protein MotB [Cronobacter sakazakii ATCC BAA-894]
 gi|156531774|gb|ABU76600.1| hypothetical protein ESA_01340 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 3/178 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
             +        + +++     + RLQ L   +   +        ++  +  +  + G+ I
Sbjct: 93  QSQGEVKKQEPNIDELKKRMERNRLQKLRGDLDQLIEADPKLRALRPHLRIDLVQEGLRI 152

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      +S+ GHTD  P+ N      N
Sbjct: 153 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFPYANGERGYSN 212

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           W LS DRA ++ + L+  G+ + ++ ++ G A            + NRRI +LV ++Q
Sbjct: 213 WELSADRANASRRELVIGGLDDGKVLRVVGMAATMRLAEKGANEALNRRISLLVLNKQ 270



 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 1/179 (0%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            N   +I+KK+        + GSWKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 4   SNHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYF 63

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                  +T    I D ++P      +      +    + ++D       + +  +   +
Sbjct: 64  RTPLSAAITGGHRIADSESPIPGGGDDVTQSQGEVKKQEPNIDELKKRMERNRLQKLRGD 123

Query: 130 NIFYLSNSQQSEHCKNSLT-RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               +    +    +  L     ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 124 LDQLIEADPKLRALRPHLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA 182


>gi|269138690|ref|YP_003295391.1| flagellar motor protein [Edwardsiella tarda EIB202]
 gi|267984351|gb|ACY84180.1| flagellar motor protein [Edwardsiella tarda EIB202]
 gi|304558696|gb|ADM41360.1| Flagellar motor rotation protein MotB [Edwardsiella tarda FL6-60]
          Length = 332

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +L+                  + ++E                 + RL+ L +++   +
Sbjct: 68  KVALSEGQRSSDSFSPIPGGGDDVTQKEGEVRKFAEDPDPQTRAEQMRLKRLRERLEQVI 127

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  ++      G+ I IID +N PMF   S+   P    +L+ I  +L   
Sbjct: 128 INDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNEL 187

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              IS+ GHTD  P+ N      NW LS DRA ++ + L+  G++ ++I ++ G A    
Sbjct: 188 PNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELIAGGLAGNKILRVVGMADTMN 247

Query: 321 KIASDPMNSANRRIDILVEDRQG 343
                   + NRRI ILV ++  
Sbjct: 248 LRNLAGNAAVNRRISILVLNKAA 270



 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 2/190 (1%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
               I++KKK       ++ G+WKI YADFMT +MAFFLVMW++          I +YF 
Sbjct: 5   KHPVILVKKKRGGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  ++  +   D  +P      +      +        D +  +   + +  R    
Sbjct: 65  TPLKVALSEGQRSSDSFSPIPGGGDDVTQKEGEVRKFAEDPDPQTRAEQMRLKRLRERLE 124

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              +++ +      + +    ++G  +       + + +  +  + P  +  + A+    
Sbjct: 125 QVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIA--P 182

Query: 191 RLQDLAKKIS 200
            L +L  KIS
Sbjct: 183 ILNELPNKIS 192


>gi|323191390|gb|EFZ76652.1| lateral flagellar motor protein B [Escherichia coli RN587/1]
          Length = 307

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 126/343 (36%), Gaps = 70/343 (20%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +                Q+       + ++     H+ K +       T +
Sbjct: 61  ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHLPKPATVAVPEETEK 105

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K +    +  +    ++ +      S+   +                   E   +P   +
Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             I   + +   +  + KI                                   P F   
Sbjct: 156 VLIKDDQNRNMFERGSAKIM----------------------------------PFFKTL 181

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
                P    +              I I GHTDA  ++N   +NW LS DRA SA +VL 
Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273


>gi|311279213|ref|YP_003941444.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308748408|gb|ADO48160.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 309

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G  +  S+        +       + KE  +   +K+  Q+  K
Sbjct: 58  QIAEYFRTPLATAITGGPRVSNSSSPIPGGGDDFTQQQGEVKKEPNIDELKKRMEQNRLK 117

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           KI   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 118 KIRGELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      IS+ GHTD   + N      NW LS +RA ++ + L+  G+ + ++ 
Sbjct: 178 RAIAPVLNEIPNKISLSGHTDDYQYANGDRGYSNWELSAERANASRRELVAGGLDDGKVL 237

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A+          ++ NRRI +LV + Q 
Sbjct: 238 RVVGMANTMKLQEHGGDDAINRRISLLVLNNQA 270



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   ++++++   +      GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQSHP-IVVVRRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    + +  +P      +      +     N  +LK      + +  R
Sbjct: 61  EYFRTPLATAITGGPRVSNSSSPIPGGGDDFTQQQGEVKKEPNIDELKKRMEQNRLKKIR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            E +    ++ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 KRKKRLQDLAKKIS 200
                L ++  KIS
Sbjct: 181 A--PVLNEIPNKIS 192


>gi|306813285|ref|ZP_07447478.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101]
 gi|305854048|gb|EFM54487.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101]
          Length = 307

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 126/343 (36%), Gaps = 70/343 (20%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +                Q+       + ++     H+ K +       T +
Sbjct: 61  ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHLPKPATVAVPEETEK 105

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K +    +  +    ++ +      S+   +                   E   +P   +
Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             I   + +   +  + KI                                   P F   
Sbjct: 156 VLIKDDQNRNMFERGSAKIM----------------------------------PFFKTL 181

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
                P    +              I I GHTDA  ++N   +NW LS DRA SA +VL 
Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273


>gi|323158625|gb|EFZ44639.1| chemotaxis protein motB [Escherichia coli E128010]
          Length = 275

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 58  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 117

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 118 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 177

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 178 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236


>gi|301018263|ref|ZP_07182776.1| chemotaxis protein MotB [Escherichia coli MS 69-1]
 gi|306814281|ref|ZP_07448447.1| flagellar motor protein MotB [Escherichia coli NC101]
 gi|300399773|gb|EFJ83311.1| chemotaxis protein MotB [Escherichia coli MS 69-1]
 gi|305852440|gb|EFM52891.1| flagellar motor protein MotB [Escherichia coli NC101]
          Length = 308

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|90408165|ref|ZP_01216333.1| flagellar motor protein [Psychromonas sp. CNPT3]
 gi|90310695|gb|EAS38812.1| flagellar motor protein [Psychromonas sp. CNPT3]
          Length = 299

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 114/324 (35%), Gaps = 43/324 (13%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   +AD M++LM FF+++   +  D    K I               K 
Sbjct: 6   CKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
            F  Q+  E     K    I +  T    D        +K  +  E  + +         
Sbjct: 55  AFGVQSMLEVKDIPKGTSVIAQEFTPGRPDPTPIEVIMQKTIEMTEAKLDFSEGDSSRAD 114

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     D  +  +       E S                       +    LAK ++  
Sbjct: 115 GEEDSKEDIPEEGNQGNEQSSEAS-----------------------EAQHQLAKAVAQE 151

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + +  ++    E+    ++I I   R    F   S+   P    V++K+ ++LA  
Sbjct: 152 LQDEIQEGAIE---IESLGQQLIIRI---REKGAFPSGSAFLQPRFRPVIRKVAKILADI 205

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             VI+I GHTD     + + R NW LS  RA S    ++K     ++   ++G+A+ +  
Sbjct: 206 PGVITISGHTDNEQVHSELYRSNWDLSAQRAVSVAHEMLKIKKIRNKHLVVAGYANSKPL 265

Query: 322 IASD--PMNSANRRIDILVEDRQG 343
             S        NRR++I++   + 
Sbjct: 266 TDSKILSERKRNRRVEIMIMQGEA 289


>gi|281178957|dbj|BAI55287.1| chemotaxis protein MotB [Escherichia coli SE15]
          Length = 308

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239
           E++     + RL+ L   +   +        ++  +  +  + G+ I IID +N PMF  
Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRT 163

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
            S+   P    +L+ I  VL      IS+ GHTD  P+ +      NW LS DRA ++ +
Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRR 223

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            LM  G++  ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 224 ELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|323165315|gb|EFZ51103.1| chemotaxis protein motB [Shigella sonnei 53G]
          Length = 275

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q +E+ +  L      G  +  S         +       ++K+  +   +K+  Q   +
Sbjct: 24  QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEDLKKRMEQSRLR 83

Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           K+   L  L+  +     +   +  +  + G+ I IID +N PMF   S+   P    +L
Sbjct: 84  KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDIL 143

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  VL      IS+ GHTD  P+ +      NW LS DRA ++ + LM  G+   ++ 
Sbjct: 144 RAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 203

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 204 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236


>gi|168234012|ref|ZP_02659070.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205331986|gb|EDZ18750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 309

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+  HTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLARHTDDFPYANGEKGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270



 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180

Query: 187 K 187
            
Sbjct: 181 A 181


>gi|331683396|ref|ZP_08383997.1| chemotaxis protein MotB [Escherichia coli H299]
 gi|284921808|emb|CBG34881.1| chemotaxis protein MotB (motility protein B) [Escherichia coli 042]
 gi|331079611|gb|EGI50808.1| chemotaxis protein MotB [Escherichia coli H299]
          Length = 308

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|188584558|ref|YP_001928003.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179348056|gb|ACB83468.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 277

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 61/322 (18%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
                  +    W + +AD M +LM+FF+++   +  D    + +     + FG N  + 
Sbjct: 3   KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI + +  P       +                                         
Sbjct: 63  FAGILESEGIPTADKFKHLR---------------------------------------- 82

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                       E+  D      ++  ++        P +  +  A   ++ +QD+ +  
Sbjct: 83  --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+   +R G+ +SI+DQ    MF + SS P   T  +L+++   L
Sbjct: 134 E----------LSKNVIIAPSRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTL 183

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
              +  I++ G T  A P        W LS +RA S   VL  +G+ +DR + ++G A  
Sbjct: 184 MKLSNRIAVTGFTATARPGTRDTAPPWELSANRALSVRDVLANAGLPDDRFASVAGKADT 243

Query: 319 RLKIASDPMNSANRRIDILVED 340
                 +P  +ANRR+ + +  
Sbjct: 244 EPMFPDNPYLAANRRVTVTLLS 265


>gi|332284002|ref|YP_004415913.1| chemotaxis protein [Pusillimonas sp. T7-7]
 gi|330427955|gb|AEC19289.1| chemotaxis protein [Pusillimonas sp. T7-7]
          Length = 310

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 3/161 (1%)

Query: 186 MKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++  +RL++L  ++ + +    +       +L + T  G+ I IID++N PMF   S+  
Sbjct: 108 LRDVERLENLKAELETLIETDPILQQFRPQLLLDMTPDGLRIQIIDKQNRPMFATGSAQV 167

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302
                 +L+++G         +SI GHTD+  + +      NW LS DRA +A + L+  
Sbjct: 168 QSYMRDILRQLGPTFNRLPNPLSISGHTDSIQYASGERDYSNWELSADRANAARRELVAG 227

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G+ E ++ ++ G +     I  +P  + NRRI I+V +++ 
Sbjct: 228 GMGESKVKRVLGLSSSVSLIKDNPAAAVNRRISIVVLNQRA 268



 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             +  I+ ++     +  +  SWKI YADF+T +MAFFLVMW++        + + +YF 
Sbjct: 3   KQEPRIVIRRKRSHVSVKHNDSWKIAYADFVTAMMAFFLVMWLVALVPQKDLQEMAEYFR 62

Query: 71  PFGKNLMTA------SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                 +           +    NP    + + I    D     +  D++     + +  
Sbjct: 63  MPLMTAVKGGPKNDTGSSVIPSGNPSIIPNPSPIASRGDARTEGDLRDVERLENLKAELE 122

Query: 125 QRLENNIFYLSNSQQ 139
             +E +        Q
Sbjct: 123 TLIETDPILQQFRPQ 137


>gi|331647484|ref|ZP_08348576.1| chemotaxis protein MotB [Escherichia coli M605]
 gi|330911699|gb|EGH40209.1| flagellar motor rotation protein MotB [Escherichia coli AA86]
 gi|331043208|gb|EGI15346.1| chemotaxis protein MotB [Escherichia coli M605]
          Length = 308

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239
           E++     + RL+ L   +   +        ++  +  +  + G+ I IID +N PMF  
Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRT 163

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
            S+   P    +L+ I  VL      IS+ GHTD  P+ +      NW LS DRA ++ +
Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRR 223

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            LM  G++  ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 224 ELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269


>gi|254564195|ref|YP_003071290.1| chemotaxis protein MotB [Methylobacterium extorquens DM4]
 gi|254271473|emb|CAX27488.1| putative chemotaxis protein MotB [Methylobacterium extorquens DM4]
          Length = 277

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 61/321 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
                  +    W + +AD M +LM+FF+++   +  D    + +     + FG N  + 
Sbjct: 3   KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             GI + +  P       +                                         
Sbjct: 63  FAGILESEGIPTADKFKHLR---------------------------------------- 82

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                       E+  D      ++  ++        P +  +  A   ++ +QD+ +  
Sbjct: 83  --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+    R G+ +SI+DQ    MF + SS P   T  +L+++   L
Sbjct: 134 E----------LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLTPTL 183

Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I++ G T    P        W LS +RA S   VL  +G+ +DR + ++G A  
Sbjct: 184 MKLPNRIAVTGFTATTRPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADT 243

Query: 319 RLKIASDPMNSANRRIDILVE 339
                 +P  +ANRR+ + + 
Sbjct: 244 EPMFPDNPYLAANRRVTVTLL 264


>gi|257097127|pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Ii)
 gi|257097128|pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Ii)
 gi|257097129|pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Iii)
 gi|257097130|pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form Iii)
          Length = 183

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239
           +++     + RL  L   +   +        ++  +  +  + G+ I IID +N PMF  
Sbjct: 7   DELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKT 66

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
            S+   P    +L+ I  VL      IS+ GHTD  P+ N      NW LS DRA ++ +
Sbjct: 67  GSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRR 126

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 127 ELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 172


>gi|59889800|emb|CAH19156.1| Lateral flagellar motor protein B (MotB-like) [Escherichia coli]
 gi|284920064|emb|CBG33121.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli
           042]
          Length = 307

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 125/343 (36%), Gaps = 70/343 (20%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +                Q+       + ++     H  K +       T +
Sbjct: 61  ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHPPKPATVAAPEETEK 105

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K +    +  +    ++ +      S+   +                   E   +P   +
Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             I   + +   +  + +I                                   P F   
Sbjct: 156 VLIKDDQNRNMFERGSAQIM----------------------------------PFFKTL 181

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
                P    +              I I GHTDA  ++N   +NW LS DRA SA +VL 
Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273


>gi|238751745|ref|ZP_04613233.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380]
 gi|238710016|gb|EEQ02246.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380]
          Length = 339

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239
           +   + K + RL  L +K+   +        ++  +L      G+ I IID +N PMF  
Sbjct: 69  DSAESRKEEYRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKM 128

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297
            S+   P    +L+ I  +L      IS+ GHTD  P+ N      NW LS DRA ++ +
Sbjct: 129 GSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGERGYSNWELSADRANASRR 188

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            L+  G+ E ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 189 ELLIGGLDEGKVLRVIGMASTMRLKEQAADDPVNRRISILVLNKQ 233



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 4/160 (2%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++ +       I +YF    K  +T+        +P      +    
Sbjct: 1   MTAMMAFFLVMWLLSVSSPQELAQIAEYFRTPLKVALTSGDRSSSSSSPIPGGGDDP--T 58

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             D  + K+    +      +    R + +    S+ +      + L    ++G  +   
Sbjct: 59  QQDGEVRKHIDSAESRKEEYRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQII 118

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               + + K  +  + P  ++ + A+     L D+  KIS
Sbjct: 119 DSQNRPMFKMGSAQVEPYMRDILRAIA--PILNDIPNKIS 156


>gi|333003303|gb|EGK22849.1| chemotaxis protein motB [Shigella flexneri K-218]
          Length = 265

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 48  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 107

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 108 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 167

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 168 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 226


>gi|294635726|ref|ZP_06714192.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685]
 gi|291090938|gb|EFE23499.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685]
          Length = 332

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 4/201 (1%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
               R S+    +    D     + E   F      E+ +   R KRL++  +K+   ++
Sbjct: 72  QGGQRSSDSFSPIPGGGDDVTQKSGEVQRFAADPDPEQRVEQMRLKRLRERLEKV--IIN 129

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
                 +   ++      G+ I IID +N PMF   S+   P    +L+ I  +L     
Sbjct: 130 DPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIAPILNELPN 189

Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            IS+ GHTD  P+ N      NW LS DRA ++ + L+  G++ ++I ++ G A      
Sbjct: 190 KISLSGHTDDLPYANGERGYSNWELSADRANASRRELVIGGLAGNKILRVVGMADTMNLR 249

Query: 323 ASDPMNSANRRIDILVEDRQG 343
                 + NRRI ILV  +  
Sbjct: 250 HLAGNAAVNRRISILVLTKAA 270



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 2/190 (1%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
               I++KKK +     ++ G+WKI YADFMT +MAFFLVMW++          I +YF 
Sbjct: 5   KHPVILVKKKRSGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +   +   D  +P      +    S +        D +      + +  R    
Sbjct: 65  TPLKVALQGGQRSSDSFSPIPGGGDDVTQKSGEVQRFAADPDPEQRVEQMRLKRLRERLE 124

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              +++ +      + +    ++G  +       + + +  +  + P  ++ + A+    
Sbjct: 125 KVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIA--P 182

Query: 191 RLQDLAKKIS 200
            L +L  KIS
Sbjct: 183 ILNELPNKIS 192


>gi|119775566|ref|YP_928306.1| flagellar motor protein MotB [Shewanella amazonensis SB2B]
 gi|119768066|gb|ABM00637.1| sodium-driven polar flagellar protein PomB [Shewanella amazonensis
           SB2B]
          Length = 312

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 113/327 (34%), Gaps = 36/327 (11%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +  P     W   +AD M++LM FF+++   +  D    K I              
Sbjct: 3   KAKCNCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSM---------- 52

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K  F  QN  E     K    I         +        ++  +  E  + +     +
Sbjct: 53  -KYAFGVQNKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPILDFQEGESE 111

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S             G+    + +  +S   + +                 + +    KK+
Sbjct: 112 SAGGVQQQQGSQRGGEASSTAQETAESTQSDSSSSQ--------------ELINQQVKKM 157

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L+  + D     +  E+    I+I I   R    F   S    P    V++ +GE+L
Sbjct: 158 AEQLNEEIVDGA---IEIESLGQQIIIRI---REKGAFGSGSGFLQPRFRPVIRAVGELL 211

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I++ G+TD     N     NW LS  RA S    L+K  G    R+ K+ G   
Sbjct: 212 KDVPGIITVSGYTDDMQISNELYSSNWDLSSKRAVSVAHELVKVKGFDSSRM-KVVGMGS 270

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQ 342
           +   + ++     + NRR++I +E  +
Sbjct: 271 NNPLVPNESAENRARNRRVEIAIEQGK 297


>gi|152995178|ref|YP_001340013.1| flagellar motor protein MotB [Marinomonas sp. MWYL1]
 gi|150836102|gb|ABR70078.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 330

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 120/320 (37%), Gaps = 39/320 (12%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             +    L ++   +AD M++LM FF+++      D    K +                 
Sbjct: 9   CPECVEGLPAYMGTFADLMSLLMCFFVLLLSFAEMDVLKFKQLAGSL------------- 55

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                         K+   +   +  +S+ +      Q+    R E         +    
Sbjct: 56  --------------KVAFGVQREVEADSIPMGTSVIAQEFSPGRPEPTPINEVKQKADST 101

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +N+L    + G    K    + +            SK  +   K+ +  +  A+ I+S 
Sbjct: 102 PENTLEVICKPGDAELKE---QSNSGSPAPVTFVDKSKADLDKEKKIQETESNAQMIASV 158

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +   V+      V  ET    I I I DQ +   F+  S+    + I V+  I +VL   
Sbjct: 159 MREEVSKG---TVEIETQEQTITIRIKDQGS---FESGSAELNYDFIPVIDLIRDVLVGI 212

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              IS+ GHTD  P  +   R NW+LS  RA S  + L  +G  +     ++G+A  R  
Sbjct: 213 QGTISVEGHTDNVPIASSRFRSNWQLSSARAISVAEELFSTGQLDQGRFAVTGYADTRPL 272

Query: 322 IASDP--MNSANRRIDILVE 339
           + +D     + NRR++I+++
Sbjct: 273 VPNDTPAHRATNRRVEIIIK 292


>gi|167576627|ref|ZP_02369501.1| Chemotaxis lafU protein [Burkholderia thailandensis TXDOH]
          Length = 311

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+E      I ++       ++ G+WK+ +ADF   LMA F+V+W++N T +  +K +  
Sbjct: 4   NKEAGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                G        GIF+                                       QR 
Sbjct: 64  EI--AGHPFFDGGVGIFE---------------------------------------QRS 82

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +    ++QQ E  K                    ++        +  L + + LA +
Sbjct: 83  RKPVVAPFDAQQPERVKR-------------------RTPGAARERTIDSLQQRRALAAR 123

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                  L   ++  ++  + D+ V+  + ++ + G            MF++ S    P+
Sbjct: 124 IMDEATRLG--MNGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPQ 169

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305
            + +L  +  VL   T  + I GHTDA+ +   ++  +NW LS  RA  A Q+L   G+ 
Sbjct: 170 FVRLLTALVPVLGTVTNKMVIVGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMD 229

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             R+ +ISG       +  +P +  NRR+++L+   + 
Sbjct: 230 AQRMFQISGMGDSVPAVPDNPDHDMNRRVELLLLTSRA 267


>gi|218675467|ref|ZP_03525136.1| flagellar motor protein MotB [Rhizobium etli GR56]
          Length = 436

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 5/273 (1%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNK--IDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                  T + G    ++P +     K     +  + +     + +       +  +  +
Sbjct: 163 AADSGPATGADGGEAYRDPFDPDFWTKQVEVTTAGKTLPPGKSEQQPAENEATEVAKAED 222

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSE--KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                L+  Q+           +E  + K   K  D +K+  +++        K    + 
Sbjct: 223 MKPVPLATDQKPAKDAKETKGAAETKEAKADGKVPDEKKAEAQKDADHQKDADKSAAASE 282

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           ++KK    L  +I+  + G VA  + +G+       G+L+SI DQ +  MF+  S++P  
Sbjct: 283 QQKKEADALQAQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQ 341

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           E ++ +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E
Sbjct: 342 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDE 401

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            RIS++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 402 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 434



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFGKNLMTAS-----KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           TK A+  YFNP        +     K + D +   ++    + + +  E  +    D + 
Sbjct: 61  TKAAVATYFNPIKLADEKPTEKGLKKPVDDAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120

Query: 116 GSTNQK---KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
            ++  +    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKTL 200


>gi|315617885|gb|EFU98483.1| chemotaxis protein motB [Escherichia coli 3431]
          Length = 265

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 48  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 107

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 108 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 167

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 168 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 226


>gi|327193053|gb|EGE59965.1| chemotaxis motility protein [Rhizobium etli CNPAF512]
          Length = 440

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 4/270 (1%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                  +   D  +P   + Q ++  +        S +        +         +  
Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKTLPPGKSEEQATEGAATEVAKAEDTKPVPL 228

Query: 134 LSNSQQSEHCKNSLTRDSEK----GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            ++ + ++  K S           GK        EK    E+N      +       +R+
Sbjct: 229 ATDQKPAKDAKESKETKGAPETKGGKATDGKAPDEKKAEAEKNADHQKDADNSAAETERQ 288

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K+  D  ++  +   G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E +
Sbjct: 289 KKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMV 348

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RI
Sbjct: 349 LAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRI 408

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           S++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 409 SQVSGFADRRLKLPADPFNAANRRIEILVQ 438



 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK A+  YFNP      K      K   D  E    +  S+ K D   +     +  D  
Sbjct: 61  TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKTL 200


>gi|218548503|ref|YP_002382294.1| flagellar motor protein MotB [Escherichia fergusonii ATCC 35469]
 gi|218356044|emb|CAQ88660.1| protein that enables flagellar motor rotation [Escherichia
           fergusonii ATCC 35469]
 gi|324113675|gb|EGC07650.1| OmpA family protein [Escherichia fergusonii B253]
 gi|325496923|gb|EGC94782.1| flagellar motor protein MotB [Escherichia fergusonii ECD227]
          Length = 304

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       S E++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVNRQPSIEELKKHMEQSRLNRLRGDLDQLIESDPKLRALRPHLKIDMVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 152 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLAGHTDDYPYANGERGYSN 211

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           W LS DRA ++ + LM  G+ E ++ ++ G A           ++ NRRI +LV ++Q
Sbjct: 212 WELSADRANASRRELMVGGLEEGKLLRVVGMAATMRLSDRGGNDAINRRISLLVLNKQ 269



 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 73/178 (41%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            +   I++K++   +      GSWKI YADFMT +MAFFLVMW+I+ +       I +YF
Sbjct: 4   RDQPIIVVKRRKPKNHGGAGHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF 63

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                  +T    I + Q+P      +      + +   +  +LK      +    R + 
Sbjct: 64  RTPLATAITGGDRISNSQSPIPGGGDDYTQQQGEVNRQPSIEELKKHMEQSRLNRLRGDL 123

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +    S+ +      +      ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 124 DQLIESDPKLRALRPHLKIDMVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIA 181


>gi|157371226|ref|YP_001479215.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568]
 gi|157322990|gb|ABV42087.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 321

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +   L     + +     + RL  L +K+   +        ++  +L      G+
Sbjct: 86  GDDPTQQDGLVKRQIDTLEKRDEELRLNKLREKLDELIESDPRLKALRPHLLINMMDEGL 145

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID +N PMF   S+        +L+ I  +L      IS+ GHTD  P+       
Sbjct: 146 RIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGERGY 205

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NRRI +LV ++Q
Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLNKQ 265



 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 6/192 (3%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + +  +++ +K       ++ GSWKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 2   KQNHPVVLVRKRKSHQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +T+      E +P         D +  + + K  +D       + +  +  E 
Sbjct: 62  RTPLKVALTSGDKSSSESSPIPGGGD---DPTQQDGLVKRQIDTLEKRDEELRLNKLREK 118

Query: 130 NIFYLSNSQQSEHCKNS-LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
               + +  + +  +   L    ++G  +       + + K  +  +    ++ + A+  
Sbjct: 119 LDELIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIA- 177

Query: 189 KKRLQDLAKKIS 200
              L DL  KIS
Sbjct: 178 -PILNDLPNKIS 188


>gi|332141875|ref|YP_004427613.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551897|gb|AEA98615.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 309

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 121/325 (37%), Gaps = 39/325 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++      P  L +W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               K  F  QN  E     K    I         D     + Q++  +  +  + + + 
Sbjct: 54  ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAG 109

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           ++ S   +     +   G+    +T    S  +  +                + ++ +L 
Sbjct: 110 NEDSAGGRQKQRGEQRGGQSQQTATQSSSSAEQSTD----------------QSQMAELM 153

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L   + D     V  E+    + I I   R    F   S+   P+   VL+KIG
Sbjct: 154 KKVAQQLEKQILDG---SVEMESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIG 207

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            +LA     I I GH+D     N + R NW LS  RA +  + +  + G  E R+  + G
Sbjct: 208 TLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRM-SVVG 266

Query: 315 FAHHRLKIASDPM---NSANRRIDI 336
            A     + +       + NRR++I
Sbjct: 267 KADTAPIVENATTSADRAKNRRVEI 291


>gi|85711188|ref|ZP_01042248.1| flagellar motor protein [Idiomarina baltica OS145]
 gi|85695101|gb|EAQ33039.1| flagellar motor protein [Idiomarina baltica OS145]
          Length = 309

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 120/328 (36%), Gaps = 39/328 (11%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +      P  L  W   +AD MT+LM FF+++   +  D    K I              
Sbjct: 7   QEECRCPPPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVLKFKQIAGSM---------- 56

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K     QN  E     K    I +       +     T Q++  +  +  + +      
Sbjct: 57  -KYALGVQNKIEVKDIPKGTSIIAQEFRPGRPEPTPIETIQQQTVEMTQQTLEFQDGESD 115

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
               K       E+G     S + +K+++  E+                ++++++L ++I
Sbjct: 116 FAGGKQV-----ERGGQQADSEEDKKAVDGSESDP------------AVEQQVKELMERI 158

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              LS  +       +  E     I+I I   +    F + S+   P+   V++++ + L
Sbjct: 159 REQLSDNIK---AGSLELEQLGQQIIIRI---KENGSFPEGSAFLQPQFKPVIREVAQAL 212

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                 I+I GHTD  P  +      W LS  RA +  + +    G  + R+    G+A 
Sbjct: 213 KDIPGEITISGHTDNQPLVSEMYTSKWDLSAKRAVAVAEEMTSVDGFDQSRLV-TMGYAD 271

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343
            +  + ++     + NRR+DI +   + 
Sbjct: 272 TKPIVPNNSTSNRALNRRVDIAIMQGKA 299


>gi|270262419|ref|ZP_06190690.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13]
 gi|270043103|gb|EFA16196.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13]
          Length = 321

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +   L     + +     + RL  L +K+   +        ++  +L      G+
Sbjct: 86  GDDPTQKDGLVKKQIDTLEKRDEELRLNKLREKLDELIESDPRLKALRPHLLINMMDEGL 145

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID +N PMF   S+        +L+ I  +L      IS+ GHTD  P+       
Sbjct: 146 RIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGERGY 205

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            NW LS DRA ++ + L+  G+SE ++ ++ G A           ++ NRRI +LV ++Q
Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLNKQ 265



 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 4/191 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           + +  +++ +K       ++ GSWKI YADFMT +MAFFLVMW++          I +YF
Sbjct: 2   KQNHPVVLVRKRKSHQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
               K  +T       E +P      +      D  + K    L+      +    R + 
Sbjct: 62  RTPLKVALTTGDKSSSESSPIPGGGDDP--TQKDGLVKKQIDTLEKRDEELRLNKLREKL 119

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +    S+ +      + L    ++G  +       + + K  +  +    ++ + A+   
Sbjct: 120 DELIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIA-- 177

Query: 190 KRLQDLAKKIS 200
             L DL  KIS
Sbjct: 178 PILNDLPNKIS 188


>gi|170741408|ref|YP_001770063.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195682|gb|ACA17629.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 441

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 1/273 (0%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+P    +    +   +   P    ++    +     +   + + + G     K+   L 
Sbjct: 168 FDPLYWQVAPLPQARSETPGPINTVAKTPSRVDARAALPNAAREGRTGLDLVPKEIADLL 227

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                     +++  +              ++   E    + +   + P+   K      
Sbjct: 228 KPPGAKPERTEAKPAEAKPAEAKPAEAKPAEAKPAEAKPAEVKPAAVAPV-DAKAAEPGE 286

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              L +L  ++   +  L        V    T  G LISI D+ N  MF+  S+ P  + 
Sbjct: 287 NAALAELKAEVLKAVQPLATGAPAPKVEVRRTGEGTLISITDELNFSMFNVGSAEPQAKV 346

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +  L++I +VL+     I +RGHTDA PF++ + DNWRLS  RA  A  +L++ GV+E R
Sbjct: 347 VKALERIAKVLSSRPGQIVLRGHTDARPFKSESYDNWRLSSARAQMAAYMLIRGGVAERR 406

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           I +I G A  + +  SDPM + NRRI+IL+ ++
Sbjct: 407 IVRIEGHADRQPRNPSDPMAAENRRIEILLREK 439



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 1/182 (0%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    III ++   D+  ++  +WKI  ADFMT +M+ FLV+W++N+T  +TK AI  YF
Sbjct: 3   DEAHEIIIVRRRGDDEDGHHSAAWKIALADFMTAMMSLFLVLWLVNSTSKETKSAIADYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     M+   KG+ D  N P  S +            K       GS ++ K+    +
Sbjct: 63  NPIRLAEMSPEKKGLRDPTNAPSDSGEPGKTGESKGGEGKGKDSSTSGSASRAKEAALFQ 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+        +      S     + +            + F P   +   L   R
Sbjct: 123 DPYAVLAKLAAEADAERPGDASSADAVTVQEGKPGVTGGEAARDPFDPLYWQVAPLPQAR 182

Query: 189 KK 190
            +
Sbjct: 183 SE 184


>gi|121997035|ref|YP_001001822.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121588440|gb|ABM61020.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 346

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 1/155 (0%)

Query: 190 KRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + +Q+LA++     L           +L E T  G+ I ++D    PMF+  S+ P   T
Sbjct: 104 EEMQELAEQFQDAVLDDPDLAEYADQILLEITDDGLRIQLVDHDGRPMFELGSADPREHT 163

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+ +  VL      +S+ GHTDA PF     DNW LS DRA +A   L+  G+  +R
Sbjct: 164 EEILRALARVLEDVPNPVSLSGHTDARPFARDDYDNWSLSTDRANAARLTLLDGGLPAER 223

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           I ++ G+A        DP    NRRI +++  R+ 
Sbjct: 224 IGQVVGYADTVPFDPDDPRADINRRISVVLLSREA 258



 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
          +EN    ++ KKVA     ++ GSWKI +ADFMT + A FLV+W++ A DDD ++ I QY
Sbjct: 3  EENKTRPVVIKKVAKHGDDHHGGSWKIAFADFMTAMFAIFLVLWLLLALDDDQRQGIGQY 62

Query: 69 FNPFGKNLMTASKGIFDEQN 88
          F         AS+ I D + 
Sbjct: 63 FRDPQAAHPPASRDIIDFEG 82


>gi|239996641|ref|ZP_04717165.1| flagellar motor protein MotB [Alteromonas macleodii ATCC 27126]
          Length = 309

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 124/325 (38%), Gaps = 39/325 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++      P  L +W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               K  F  QN  E     K    I         D     + Q++  +  +  + + + 
Sbjct: 54  ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAG 109

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           ++ S   +    +  E+     + T  E S + E++                + ++ +L 
Sbjct: 110 NEDSAGGRQ--KQRGEQRGGQSQQTATESSSSAEQST--------------DQSQMAELM 153

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L   + D     V  E+    + I I   R    F   S+   P+   VL+KIG
Sbjct: 154 KKVAQQLEKQILDG---SVEMESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIG 207

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            +LA     I I GH+D     N + R NW LS  RA +  + +  + G  E R+  + G
Sbjct: 208 TLLADVPGEIEISGHSDGQHIANELYRSNWDLSAQRAVAVAEAMRTAPGFDESRM-SVVG 266

Query: 315 FAHHRLKIASDP---MNSANRRIDI 336
            A     + +       + NRR++I
Sbjct: 267 KADTDPIVENATSPSDRAQNRRVEI 291


>gi|213054486|gb|ACJ39422.1| PomB2 [Aeromonas hydrophila]
          Length = 297

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 120/335 (35%), Gaps = 65/335 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
                 P  L  +   +AD M++LM FF+++      D    K I           N   
Sbjct: 2   AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 61

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +   +  P R     ID  + +   +T+  +D + G  +Q   + + E+ +
Sbjct: 62  VKDIPKGTSVIALEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGDADQAGGHDKSEDKL 121

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                 Q+                                             A K++++
Sbjct: 122 VGGDTRQE---------------------------------------------AQKKQEQ 136

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             DLAK+++  +   + D  ++    E     I+I I   R    F   S+   P+   V
Sbjct: 137 SNDLAKELAEQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 190

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
           ++K+  +L      I+I GHTD     + + + NW LS  RA +    ++K  G    R+
Sbjct: 191 VRKVATLLKDVPGEITISGHTDDVATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 250

Query: 310 SKISGFAHHRLKIAS-DPMNSA-NRRIDILVEDRQ 342
             + G A  +  + +  P N   NRR++I +   +
Sbjct: 251 V-VQGMADSQPLVPNTTPENRRMNRRVEISIMQGK 284


>gi|190890377|ref|YP_001976919.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
 gi|190695656|gb|ACE89741.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
          Length = 440

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 4/270 (1%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                  +   D  +P   + Q ++  +        S +        +         +  
Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKALPPGKSAEQATEGAATEVAKAEDMKPVPL 228

Query: 134 LSNSQQSEHCKNSLTRDSEK----GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            ++ + ++  K S           GK        EK +  E+N      + +     +R+
Sbjct: 229 ATDQKPAKDAKESKETKGAPETKGGKTTDGKAPDEKKVEAEKNADHQKDADKSADETERQ 288

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K   D  ++  +   G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E +
Sbjct: 289 KTEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMV 348

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RI
Sbjct: 349 LAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRI 408

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           S++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 409 SQVSGFADRRLKLPADPFNAANRRIEILVQ 438



 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK A+  YFNP      K      K   D  E    +  S+ K D   +     +  D  
Sbjct: 61  TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKAL 200


>gi|115524024|ref|YP_780935.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517971|gb|ABJ05955.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 272

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 63/322 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
                +  +    W + +AD M +L+AFF+++   +  D D  K +              
Sbjct: 2   GKKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDKDKLKVVAG------------ 49

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                                         S+    G     +    LE +   +S   +
Sbjct: 50  ------------------------------SMRDAFGVQPDSRYAGVLEQDGVPISGKLK 79

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +    ++    +    D   +   +    +E            + +   ++ LQD+ +  
Sbjct: 80  NASLVSTNQASNTPSPDEGDNDSAKTKAEREFA----------LASASLRQALQDMPE-- 127

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      I K V+FE T+ G+ + I DQ    MF + S +P   T +++Q++   L
Sbjct: 128 --------LTEISKNVIFEETKDGLNMEITDQDGRSMFAEGSKVPYDRTRLLVQRLAAPL 179

Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             +   ISI GHT A         + + LS DRA +  Q+L + GV   +I  +SG A  
Sbjct: 180 RATPLRISIAGHTSAGVVIGRSDYNAFDLSSDRANAVRQILEREGVPTSQIYAVSGRADS 239

Query: 319 RLKIASDPMNSANRRIDILVED 340
           +     D   SANRR+ I +  
Sbjct: 240 QPLFPDDATLSANRRVTITLMR 261


>gi|91211113|ref|YP_541099.1| flagellar motor protein MotB [Escherichia coli UTI89]
 gi|110642005|ref|YP_669735.1| flagellar motor protein MotB [Escherichia coli 536]
 gi|117624039|ref|YP_852952.1| flagellar motor protein MotB [Escherichia coli APEC O1]
 gi|191172996|ref|ZP_03034530.1| chemotaxis protein MotB [Escherichia coli F11]
 gi|215487100|ref|YP_002329531.1| flagellar motor protein MotB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218558752|ref|YP_002391665.1| flagellar motor protein MotB [Escherichia coli S88]
 gi|218689885|ref|YP_002398097.1| flagellar motor protein MotB [Escherichia coli ED1a]
 gi|237705847|ref|ZP_04536328.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA]
 gi|300935867|ref|ZP_07150825.1| chemotaxis protein MotB [Escherichia coli MS 21-1]
 gi|300982219|ref|ZP_07175931.1| chemotaxis protein MotB [Escherichia coli MS 200-1]
 gi|312967092|ref|ZP_07781310.1| chemotaxis protein motB [Escherichia coli 2362-75]
 gi|331657937|ref|ZP_08358899.1| chemotaxis protein MotB [Escherichia coli TA206]
 gi|91072687|gb|ABE07568.1| chemotaxis MotB protein [Escherichia coli UTI89]
 gi|110343597|gb|ABG69834.1| chemotaxis MotB protein [Escherichia coli 536]
 gi|115513163|gb|ABJ01238.1| chemotaxis MotB protein [Escherichia coli APEC O1]
 gi|190906707|gb|EDV66312.1| chemotaxis protein MotB [Escherichia coli F11]
 gi|215265172|emb|CAS09560.1| protein that enables flagellar motor rotation [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365521|emb|CAR03248.1| protein that enables flagellar motor rotation [Escherichia coli
           S88]
 gi|218427449|emb|CAV17777.1| protein that enables flagellar motor rotation [Escherichia coli
           ED1a]
 gi|222033636|emb|CAP76377.1| chemotaxis protein motB [Escherichia coli LF82]
 gi|226900604|gb|EEH86863.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA]
 gi|300307289|gb|EFJ61809.1| chemotaxis protein MotB [Escherichia coli MS 200-1]
 gi|300458979|gb|EFK22472.1| chemotaxis protein MotB [Escherichia coli MS 21-1]
 gi|307626628|gb|ADN70932.1| flagellar motor protein MotB [Escherichia coli UM146]
 gi|312288556|gb|EFR16458.1| chemotaxis protein motB [Escherichia coli 2362-75]
 gi|312946487|gb|ADR27314.1| flagellar motor protein MotB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315286597|gb|EFU46030.1| chemotaxis protein MotB [Escherichia coli MS 110-3]
 gi|315296507|gb|EFU55804.1| chemotaxis protein MotB [Escherichia coli MS 16-3]
 gi|320194396|gb|EFW69027.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327]
 gi|323186771|gb|EFZ72091.1| chemotaxis protein motB [Escherichia coli RN587/1]
 gi|323952390|gb|EGB48263.1| OmpA family protein [Escherichia coli H252]
 gi|323956291|gb|EGB52034.1| OmpA family protein [Escherichia coli H263]
 gi|324007255|gb|EGB76474.1| chemotaxis protein MotB [Escherichia coli MS 57-2]
 gi|324013535|gb|EGB82754.1| chemotaxis protein MotB [Escherichia coli MS 60-1]
 gi|331056185|gb|EGI28194.1| chemotaxis protein MotB [Escherichia coli TA206]
          Length = 308

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++  
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269


>gi|51597618|ref|YP_071809.1| hypothetical protein YPTB3318 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590900|emb|CAH22556.1| Putative chemotaxis membrane protein [Yersinia pseudotuberculosis
           IP 32953]
          Length = 264

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 63/301 (20%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           +MA F+V+WI+    ++ ++ I    N          K IF +Q+     S++K      
Sbjct: 1   MMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPSKSK------ 45

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                                             + S     +      K     +  + 
Sbjct: 46  ------------------------------SGGGKLSNSIDGNEQAKETKSNLAIEVPEP 75

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           EKS+ +              +  K +  +++L++ I    S     N    +  E    G
Sbjct: 76  EKSLEE--------------VVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQG 118

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IAR 282
           + I I D +   MF +SS++  P    +L ++          I I GHTDAS +R+ +  
Sbjct: 119 LRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLY 178

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +NW LS +RA  A++ L+  G+ E R+ +I+  A   L   +DP+ + NRRI+I+V  + 
Sbjct: 179 NNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMVLTKT 238

Query: 343 G 343
            
Sbjct: 239 A 239


>gi|206890444|ref|YP_002248653.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742382|gb|ACI21439.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 252

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L       +  +  +      + +      + K+  +   K I   L       +   ++
Sbjct: 68  LESGQSFMQQSSAIQQEVKTSVQESTPSETRAKRFEEQFKKTIEEKL-----KELKDHIM 122

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +T   G+ I I+D    PMF  SS+ P  +   +L+ + E +      +++ GHTDA P
Sbjct: 123 IDTVEGGVRIQIVDLEGEPMFPLSSAEPTEKAREILKVVAENIKDEPARVAVEGHTDAVP 182

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           FR     NW LS  RA SA + + + GV+ ++I+++ G+A     I  DP +  NRRI I
Sbjct: 183 FRGGKTTNWELSTARASSARREIERYGVAPEKIARVVGYADTLPLIKDDPKDPRNRRISI 242

Query: 337 LVE---DRQG 343
           ++    ++QG
Sbjct: 243 ILMFEKEKQG 252



 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 34/254 (13%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  +  II KK+      ++ GSWK+ YADF T +MAFFL++W+++  D   + AI  YF
Sbjct: 3   DKSKTTIIVKKIKKGHEAHHGGSWKVAYADFTTAMMAFFLLLWLLSMLDPVKRAAIADYF 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE- 128
             F  NL+ + +    + +  ++  +  +  S          + +   T ++K  +  + 
Sbjct: 63  RYF--NLLESGQSFMQQSSAIQQEVKTSVQESTPSETRAKRFEEQFKKTIEEKLKELKDH 120

Query: 129 -------------------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
                                +F LS+++ +E  +  L   +E  KD      +E   + 
Sbjct: 121 IMIDTVEGGVRIQIVDLEGEPMFPLSSAEPTEKAREILKVVAENIKDEPARVAVEGHTDA 180

Query: 170 -----EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
                 +       +     A +  +R     +KI+  +       ++K           
Sbjct: 181 VPFRGGKTTNWELSTARASSARREIERYGVAPEKIARVVGYADTLPLIKD--DPKDPRNR 238

Query: 225 LISIIDQRNTPMFD 238
            ISII      MF+
Sbjct: 239 RISII-----LMFE 247


>gi|114320660|ref|YP_742343.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227054|gb|ABI56853.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 285

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 2/195 (1%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           +E    +        +  +      P   +    A   +  ++DL  ++   L       
Sbjct: 76  AESAPSMLDLEGGSPTPLELGETPTPMDQQRDEGAWISEGAMRDLLSELERALEEKEELA 135

Query: 211 IVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
             +  VL + T  G+ I ++D  N PMFD  S+        +L  +  VL      + I 
Sbjct: 136 EFRDQVLMDMTPDGLRIQLVDAENRPMFDLGSARLRSYAAEILSGLTGVLERVPNALRIS 195

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           GHTDA PF       NW LS DRA +A + L  SG++  R++++ G A  +     +PM 
Sbjct: 196 GHTDARPFVGRRDYTNWELSTDRANAARRTLTASGIAPYRVAQVVGVAETQPLDPDNPMA 255

Query: 329 SANRRIDILVEDRQG 343
             NRRI I++   + 
Sbjct: 256 PVNRRISIILLTPEA 270


>gi|222147584|ref|YP_002548541.1| flagellar motor protein MotB [Agrobacterium vitis S4]
 gi|221734572|gb|ACM35535.1| flagellar motor protein [Agrobacterium vitis S4]
          Length = 444

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 2/253 (0%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK-QYQRLENNIFYLSNSQQSEHCKNSLTR 149
           + +         DE  T      K     QK    Q          +  Q      S   
Sbjct: 192 QTAQGKPGKAKPDEQQTVAEAAAKPDPFAQKPVDQQASAAAAAAAPDGAQGTPPSKSQPE 251

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
              + +   +   +     + +   +    +       + ++   L ++I+S + G VA 
Sbjct: 252 AKPQVEIDGQQVAIAVPKARPDPKQVAREEQNASADSDQTQQADQLKQQIASEIGG-VAG 310

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            + +G++ +    G+LI++ DQ   PMFD  S++P  E ++ ++KIG++LA     + IR
Sbjct: 311 KLAEGLIVQPAEGGLLITLTDQSQAPMFDVGSAVPRKEMVLAMEKIGKLLAERQGAVVIR 370

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA  ++    DNW LS+ RA+SAY +L++ G++++RI+++SGFA  RL    DP+ +
Sbjct: 371 GHTDARQYKGPDNDNWGLSMSRAHSAYYMLVRGGLAQNRITQVSGFADRRLLKPEDPLAA 430

Query: 330 ANRRIDILVEDRQ 342
           ANRRI+ILV+  Q
Sbjct: 431 ANRRIEILVQGDQ 443



 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 8/197 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ I+IK+    D    + G+WKI YADFMT +MAFFLVMW++NA ++ 
Sbjct: 1   MSDAENHHHGKNEIIVIKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEK 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFDEQNPPERSSQNKIDLSIDE----HITKNSVD 112
           T  ++  YFNP      K      K   D+    E   ++KI    +       T   + 
Sbjct: 61  TTASVASYFNPIKLADEKPTEKGVKKPVDQAEGEESKERSKIKAEEETLGKAAATGEDMT 120

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
              G      +    EN    L+   Q    + +++   E G      +          +
Sbjct: 121 STSGDKPVYSEADLFENPYSVLAEIAQEVGQQANVSAKGEGGASESGPSTGASGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRK 189
            F P    +++   + K
Sbjct: 181 PFDPDFWSQQMQTAQGK 197


>gi|26248156|ref|NP_754196.1| flagellar motor protein MotB [Escherichia coli CFT073]
 gi|227885682|ref|ZP_04003487.1| flagellar motor protein MotB [Escherichia coli 83972]
 gi|300994031|ref|ZP_07180650.1| chemotaxis protein MotB [Escherichia coli MS 45-1]
 gi|301050754|ref|ZP_07197612.1| chemotaxis protein MotB [Escherichia coli MS 185-1]
 gi|26108560|gb|AAN80763.1|AE016762_16 Chemotaxis motB protein [Escherichia coli CFT073]
 gi|227837255|gb|EEJ47721.1| flagellar motor protein MotB [Escherichia coli 83972]
 gi|300297571|gb|EFJ53956.1| chemotaxis protein MotB [Escherichia coli MS 185-1]
 gi|300406399|gb|EFJ89937.1| chemotaxis protein MotB [Escherichia coli MS 45-1]
 gi|307553906|gb|ADN46681.1| flagellar motor rotation protein [Escherichia coli ABU 83972]
 gi|315290318|gb|EFU49694.1| chemotaxis protein MotB [Escherichia coli MS 153-1]
          Length = 308

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++  
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269


>gi|294492517|gb|ADE91273.1| chemotaxis protein MotB [Escherichia coli IHE3034]
          Length = 308

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++  
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269


>gi|118589971|ref|ZP_01547375.1| flagellar motor protein MotB [Stappia aggregata IAM 12614]
 gi|118437468|gb|EAV44105.1| flagellar motor protein MotB [Stappia aggregata IAM 12614]
          Length = 500

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 3/270 (1%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                A  G F    P +  +Q++  ++            K G    +K        +  
Sbjct: 228 APSSHAMAGDFAYAAPFDEGTQSETGIAQQNGNAAPGKGAKKGDYMAEKAGTTSFEFVGT 287

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +     E     +     K  +      + +S  +          +        +   +
Sbjct: 288 GTLPDNGETTDPVVAHVLGKSLEQSSGEVVFESETETVVGTGAGEGEGTYEEDFTESSAE 347

Query: 194 DLAKKISSTL---SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L  ++S  L    G V +     +       G LIS+ D +N  MF   S+ P PE + 
Sbjct: 348 VLVARLSEVLAQTEGTVLEETASQITVTREGEGALISLTDDQNFGMFAIGSAEPRPELVK 407

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L++IG+++A +   I I+GHTDA PFR+   DNWRLS  RA+ A  +L + GV +DR +
Sbjct: 408 LLERIGKIVADTPGQIVIKGHTDARPFRSKTYDNWRLSSARAHMALYMLSRGGVGKDRFN 467

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++ G+A   LK+ SDP  ++NRRI+I + +
Sbjct: 468 RVEGYADKDLKVPSDPFAASNRRIEIYLLE 497



 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           ++ +I+++K + +D     G WKI YADFMT LMAFFLVMW+IN TDD  ++ + QYFNP
Sbjct: 7   NEIVIVRRKNSWEDDQTPHGVWKIAYADFMTALMAFFLVMWLINVTDDSVRRGVAQYFNP 66

Query: 72  FG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
               +     KG+ D +   E +       +     +   VD      +   +  +LE  
Sbjct: 67  VKLASTAPNRKGLNDPEINGETNEAGTKLFTGKLGGSDAPVDQDENFGDGLDEGHKLEEV 126

Query: 131 IFYLSNSQQSEHCK 144
           I            +
Sbjct: 127 IETPEMGGAPASGQ 140


>gi|116250495|ref|YP_766333.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255143|emb|CAK06217.1| putative motility protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 443

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 5/275 (1%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                  +   D  +P   + Q ++  +        S +  + S   +         I  
Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKPLPPGKSDEQAVESETTEIAKLEDAKPIPL 228

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCK-----STDLEKSINKEENYFLPPLSKEKILAMKR 188
            ++ + ++  K +       G    K     S + +K+  +++        K      ++
Sbjct: 229 TTDQKAAQETKETKETKGAVGAKDGKTPGGRSPEDKKAEAQKDADHQKDADKSAAETEQQ 288

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +K+  +  +   +   G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E 
Sbjct: 289 QKKEAEQLQAQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEM 348

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++KIG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E R
Sbjct: 349 VLAMEKIGAILKERGGAVAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKR 408

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           IS++SGFA  RLK+ SDP N+ NRRI+ILV+  QG
Sbjct: 409 ISQVSGFADRRLKLPSDPFNATNRRIEILVQADQG 443



 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGKNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK ++  YFNP      K      K   D  E    +  S+ K +   D     +  D  
Sbjct: 61  TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEEDPNDGKAAADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200


>gi|293410200|ref|ZP_06653776.1| motB [Escherichia coli B354]
 gi|291470668|gb|EFF13152.1| motB [Escherichia coli B354]
          Length = 241

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 24  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 83

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 84  QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 143

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 144 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 202


>gi|261212057|ref|ZP_05926343.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341]
 gi|260838665|gb|EEX65316.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341]
          Length = 304

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 120/320 (37%), Gaps = 49/320 (15%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFD 85
           W   +AD M++LM FF+++   +  D    K I           N      +     I  
Sbjct: 2   WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61

Query: 86  EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           ++  P R     ID+ + +   IT+ +++ + G +++    QR    +    +++ S   
Sbjct: 62  QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQE 121

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +   +                              ++  A    ++++ +A+ I   L
Sbjct: 122 NQNTQSE-----------------------------MQQQQAQAMSEQMETVAESIKKAL 152

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           S  +    ++    E     I I I   R    F + S+   P+   ++++I +++    
Sbjct: 153 SREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIP 206

Query: 264 EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
             + + GHTD       + R NW LS  RA S  Q + K  G    R+ ++ G A  +  
Sbjct: 207 GKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQRL-QVRGMADTQPL 265

Query: 322 IASDPMNSA--NRRIDILVE 339
             +D       NRR++I + 
Sbjct: 266 GPNDTEAQRTINRRVEISIL 285


>gi|262274767|ref|ZP_06052578.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
 gi|262221330|gb|EEY72644.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
          Length = 309

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 126/334 (37%), Gaps = 60/334 (17%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
               P  L +W   +AD M++LM FF+++   +  D    K I           N     
Sbjct: 5   CKCPPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNLLEVK 64

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFY 133
            +     +  ++  P R     I++ + + I  T+ ++D + G +++    QR       
Sbjct: 65  DIPKGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFQEGESDRAGGAQR------- 117

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                             +  +    S   E S+ + E               +  +++ 
Sbjct: 118 ------------------DSAELEGGSAASEASMQEME---------------QDTEQMS 144

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            +A+ +   L   V +  V+          ++I I   R    F   S+   P+   +++
Sbjct: 145 SVAQMVVQALEREVEEGAVEVENL---GQQLIIRI---RENGAFPAGSAFLQPKFRPLVR 198

Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           +I +++     ++ + GHTD SP    + R NW LS  RA S  Q + K  G    R+ +
Sbjct: 199 QIADLVKDVPGIVRVSGHTDDSPLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDPMRM-R 257

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           + G A    ++ +D     + NRR++I +   + 
Sbjct: 258 VEGLAGSSPRVPNDTPENRAQNRRVEIAIMQGKA 291


>gi|218699541|ref|YP_002407170.1| flagellar motor protein MotB [Escherichia coli IAI39]
 gi|218369527|emb|CAR17296.1| protein that enables flagellar motor rotation [Escherichia coli
           IAI39]
          Length = 308

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            + +       + E++     + RL+ L   +   +        ++  +  +  + G+ I
Sbjct: 91  TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      N
Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNCISLSGHTDDFPYASGEKGYSN 210

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + LM  G++  ++ ++ G A         P ++ NRRI +LV ++  
Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269



 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 2/181 (1%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      + +   N  +LK      + +  R
Sbjct: 60  EYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLR 119

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +    S+ +      +      ++G  +       + + +  +  + P  ++ + A+
Sbjct: 120 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAI 179

Query: 187 K 187
            
Sbjct: 180 A 180


>gi|126443721|ref|YP_001061208.1| chemotaxis LafU protein [Burkholderia pseudomallei 668]
 gi|126223212|gb|ABN86717.1| chemotaxis LafU protein [Burkholderia pseudomallei 668]
          Length = 311

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+E+     I ++       ++ G+WK+ +ADF   LMA F+V+W++N T +  +K +  
Sbjct: 4   NKESGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                G+       GIF+                                       QR 
Sbjct: 64  EI--AGRPFFDGGVGIFE---------------------------------------QRS 82

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +    ++QQ +  +                    ++        +  L + + LA +
Sbjct: 83  RKPVVAPFDAQQPDRMRR-------------------RTSGAARERTIDSLQQRRALAAR 123

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                  L   +   ++  + D+ V+  + ++ + G            MF++ S    P 
Sbjct: 124 IMDEASRLG--MDGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPP 169

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            I +L  +  VL   T  + I GHTDA+ +   ++  +NW LS  RA  A QVL   G+ 
Sbjct: 170 FIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMD 229

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             R+ +ISG       +  +P +  NRR+++L+   + 
Sbjct: 230 AQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267


>gi|134280878|ref|ZP_01767588.1| chemotaxis LafU protein [Burkholderia pseudomallei 305]
 gi|254182925|ref|ZP_04889518.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655]
 gi|254299720|ref|ZP_04967169.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e]
 gi|125657184|gb|ABN48672.1| chemotaxis LafU protein [Burkholderia pseudomallei]
 gi|134247900|gb|EBA47984.1| chemotaxis LafU protein [Burkholderia pseudomallei 305]
 gi|157809631|gb|EDO86801.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e]
 gi|184213459|gb|EDU10502.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655]
          Length = 311

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           N+E+     I ++       ++ G+WK+ +ADF   LMA F+V+W++N T +  +K +  
Sbjct: 4   NKESGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                G+       GIF+                                       QR 
Sbjct: 64  EI--AGRPFFDGGVGIFE---------------------------------------QRS 82

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +    ++QQ +  +                    ++        +  L + + LA +
Sbjct: 83  RKPVVAPFDAQQPDRMRR-------------------RTSGAARERTIDSLQQRRALAAR 123

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
                  L   +   ++  + D+ V+  + ++ + G            MF++ S    P 
Sbjct: 124 IMDEASRLG--MDGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPP 169

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            I +L  +  VL   T  + I GHTDA+ +   ++  +NW LS  RA  A QVL   G+ 
Sbjct: 170 FIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMD 229

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             R+ +ISG       +  +P +  NRR+++L+   + 
Sbjct: 230 AQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267


>gi|322832491|ref|YP_004212518.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321167692|gb|ADW73391.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 367

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 3/196 (1%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-D 209
             +  D              ++  +  + + +  + +    LQ L +K+   L+      
Sbjct: 74  GPRSSDATSPIPGGGEDPTVQDGEVHKMEQSQGASKRESDDLQRLQQKLEDMLASDPRLK 133

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           ++   ++   T  G+ I IID +N PMF   S+I  P    +L+ I  VL      IS+ 
Sbjct: 134 DLRPHLMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIAPVLDGFPNKISLA 193

Query: 270 GHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P+        NW LS +RA ++ + +M  G+SE ++ ++ G             
Sbjct: 194 GHTDDMPYATGERGYSNWELSTERANASRREMMSGGLSEGKVLRVMGMGSSMQLKNHPAG 253

Query: 328 NSANRRIDILVEDRQG 343
           ++ NRRI ILV ++  
Sbjct: 254 DAINRRISILVLNKHA 269



 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 1/179 (0%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
            ++   ++++KK       ++ GSWKI YADFMT +MAFFLVMW+I+ +       I +Y
Sbjct: 3   HQSHPIVVVRKKKNKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLISISSPKELVQIAEY 62

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F       +T      D  +P     ++      + H  + S       ++  ++ Q+  
Sbjct: 63  FRTPLAVAITGGPRSSDATSPIPGGGEDPTVQDGEVHKMEQSQGASKRESDDLQRLQQKL 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            ++   S+ +  +   + +   +E+G  +       + + +  +  + P  ++ + A+ 
Sbjct: 123 EDMLA-SDPRLKDLRPHLMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIA 180


>gi|220924426|ref|YP_002499728.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219949033|gb|ACL59425.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 277

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 116/323 (35%), Gaps = 63/323 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
                  +    W + +AD M +LM+FF+++   +  D    +A+     + FG N  + 
Sbjct: 3   RKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQAVAGSMRDAFGTNRESR 62

Query: 80  SKGIFDEQNPPERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
             GI ++   P  +  ++  D++ D+   + +  L     +         +         
Sbjct: 63  FNGIIEKNGLPSATRLRDPRDVTPDKASDRTTPPLPDEVFDNGVPQNGYRDGFG------ 116

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
                                                       +     ++ LQDL   
Sbjct: 117 --------------------------------------------LAMASLRQALQDLPD- 131

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                       + K VL   T  G+ +S++DQ N  MF   S+ P   T  VL+++   
Sbjct: 132 ---------IAELSKNVLIHETERGLDVSLVDQDNRSMFPDGSTRPNDRTRQVLERLAPT 182

Query: 259 LAHSTEVISIRGHTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +   +  I++ G+T A+          W LS  RA S  ++L  +G+ +DR + +SG A 
Sbjct: 183 IRSLSNRIAVAGYTAATRPGRRPPAPPWELSTGRAISVREILAGAGIPDDRFAVVSGKAD 242

Query: 318 HRLKIASDPMNSANRRIDILVED 340
                  +P  +ANRR+ I +  
Sbjct: 243 TEPLFPDNPYIAANRRVTITLLR 265


>gi|269103244|ref|ZP_06155941.1| Flagellar motor rotation protein MotB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163142|gb|EEZ41638.1| Flagellar motor rotation protein MotB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 314

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 121/327 (37%), Gaps = 57/327 (17%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81
              +W   +AD  T+LM FF+++   +  D    K I           N    N +    
Sbjct: 11  GAPAWMATFADLATLLMCFFVLLLSFSEMDVMKFKQIAGSMKNAFGVQNLLDINDIPKGT 70

Query: 82  GIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            +  ++  P R     I++ + +   +T+ ++D   G +++    +R    +      ++
Sbjct: 71  SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGESDKAGGTERSAGTLTGGQADKK 130

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           ++  +    +++                                        L+ L K +
Sbjct: 131 NKTQQQDQDQNASDS-------------------------------------LKQLEKVL 153

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  +   + +     V  E     ++I I   +    F + S+   P+   +++++  ++
Sbjct: 154 NKAIEREIEEG---NVEIENFGQQLVIRI---KEQGAFPEGSAFLQPKFRPLVRQVASLV 207

Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                 + I GHTD  P  + + R NW +S  RA S  Q + K +G  + R+ ++ G A 
Sbjct: 208 KDVPGTVRISGHTDDRPVESELYRSNWDISAQRAVSVAQEMAKVTGFDQHRM-QVVGLAD 266

Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342
                ++D       NRR++I +   +
Sbjct: 267 TAPIASNDTAEGRKRNRRVEISIMQGK 293


>gi|254509011|ref|ZP_05121116.1| flagellar motor protein [Vibrio parahaemolyticus 16]
 gi|219548046|gb|EED25066.1| flagellar motor protein [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 119/323 (36%), Gaps = 49/323 (15%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++   +  D    K I           N      +     I  +
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60

Query: 87  QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     ID+ + +   IT+ +++   G +++    QR                  
Sbjct: 61  EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                      D  K T  +      +N        ++  + +  + L+ L + I   L 
Sbjct: 103 -----------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESIKKALE 151

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +    ++    E     I I I   R    F + S+   P+   ++++I +++     
Sbjct: 152 REIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPG 205

Query: 265 VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           ++ + GHTD     + + R NW LS  RA S  Q + K  G +  R+ ++ G A      
Sbjct: 206 IVRVSGHTDNQRIESELYRSNWDLSAQRAVSVAQEMEKVRGFTSQRL-RVRGMADTEPLG 264

Query: 323 ASDPM--NSANRRIDILVEDRQG 343
            +D     S NRR++I +   + 
Sbjct: 265 PNDTEAQRSRNRRVEISIMQGEA 287


>gi|253990166|ref|YP_003041522.1| flagellar motor protein MotB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781616|emb|CAQ84779.1| chemotaxis motb protein [Photorhabdus asymbiotica]
          Length = 327

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMF 237
             E + A    +RL  L +++   +        ++  +L +    G+ I IID+ N PMF
Sbjct: 100 QVEVVEANDDARRLNRLREQLDQLIITDPRLKALRPHLLIDMMDEGLRIQIIDRENRPMF 159

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295
              S+        +L+ I  +L      IS+ GHTD   + N      NW LS DRA ++
Sbjct: 160 MIGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDDLKYANGERGYSNWELSADRANAS 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            + L+  G+ E++I ++ G A        D  +  NRRI ILV ++Q 
Sbjct: 220 RRELLIGGLDEEKILRVVGMASTVRLKQEDASSPVNRRISILVLNKQA 267



 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           +I  K+   +D  ++ GSWKI YADFMT +MAFFLVMW++  +       I +YF    +
Sbjct: 8   VIKVKRRKRNDIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYFRTPLQ 67

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             +   +   D  NP        +D+   E  T   V++   + + ++  +  E     +
Sbjct: 68  VAINKGERSSDSSNPIPGGG---LDVLYQEGDTLRQVEVVEANDDARRLNRLREQLDQLI 124

Query: 135 SNSQQSEHCKNSL 147
               + +  +  L
Sbjct: 125 ITDPRLKALRPHL 137


>gi|149191103|ref|ZP_01869362.1| flagellar motor protein MotB [Vibrio shilonii AK1]
 gi|148835031|gb|EDL52009.1| flagellar motor protein MotB [Vibrio shilonii AK1]
          Length = 294

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 115/321 (35%), Gaps = 51/321 (15%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++   +  D    K I           N      +     I  +
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60

Query: 87  QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     ID+ + +   IT+ +++   G +++    QR +  +     + +++  +
Sbjct: 61  EFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGNQRDDGKMTGGQTADRTQKNQ 120

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                                            +      + +  + L  L + I   L 
Sbjct: 121 ---------------------------------IGTASAQSEQENEDLDKLEEIIKKALQ 147

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +    V+    +     ++I I   +    F + S+   P+   +++++ +++     
Sbjct: 148 QEIKQGAVE---VDNLGQQLVIRI---QEKGAFPEGSAFLQPKFRPLVRQVADLVKDIPG 201

Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
            + + GHTD  P    + R NW LS  RA S  Q + K      +  ++ G A       
Sbjct: 202 QVRVSGHTDNLPLDSELYRSNWDLSSQRAVSVAQEMEKVKGFSHQRLRVLGVADTEPLGP 261

Query: 324 SDPM--NSANRRIDILVEDRQ 342
           +D     + NRR++I +   +
Sbjct: 262 NDTERQRARNRRVEISIMQGE 282


>gi|86356325|ref|YP_468217.1| flagellar motor protein MotB [Rhizobium etli CFN 42]
 gi|86280427|gb|ABC89490.1| chemotaxis motility protein [Rhizobium etli CFN 42]
          Length = 436

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 130/266 (48%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                  +   D  +P   + Q ++  +      K+        T +  + + ++     
Sbjct: 169 ATGADGGQAYRDPFDPDFWTKQVEVTTAGKPLPGKSEGQAAESETTEIAKAEDMKPVPLA 228

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                  E  +     +++ GK        EK+    ++      +       +++K+  
Sbjct: 229 TDQKPAKEVKETMGVAEAKDGKVTDGKAPEEKTAEARKDAEHQKEADRDAAGAEQQKKEA 288

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +  +   +   G VA  + +G+       G+L+SI DQ +  MF+  S++P  E ++ ++
Sbjct: 289 EQLQAQIAQQIGGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAME 348

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           KIG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G++E R+S++S
Sbjct: 349 KIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLNETRVSQVS 408

Query: 314 GFAHHRLKIASDPMNSANRRIDILVE 339
           GFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 409 GFADRRLKLPADPFNAANRRIEILVQ 434



 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSDGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK A+  YFNP      K      K   D  E    +  S+ K D   +     +  D  
Sbjct: 61  TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGQAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200


>gi|317047826|ref|YP_004115474.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b]
 gi|316949443|gb|ADU68918.1| OmpA/MotB domain protein [Pantoea sp. At-9b]
          Length = 342

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 4/195 (2%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            R S+    +    D     + E    +   ++++ L   R  RL++   ++      L 
Sbjct: 74  QRSSDSDSPIPGGGDDPTKKDGEVKKVVDMDAQKRQLDDIRLNRLREKLDQLIEADPRLK 133

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
           A  +   ++      G+ I IID +N PMF   S+   P    +L+ I  VL      IS
Sbjct: 134 A--LRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNKIS 191

Query: 268 IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + GHTD   +        NW LS DRA ++ + LM  G+   ++ ++ G A         
Sbjct: 192 LAGHTDDFQYATGDRGYSNWELSADRANASRRELMMGGLDGSKMLRVVGMADTMKLKNRG 251

Query: 326 PMNSANRRIDILVED 340
             ++ NRRI +LV +
Sbjct: 252 GNDAVNRRISLLVLN 266



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 3/192 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   ++IK++        + GSWKI YADFMT +MAFF+VMW+++  +      I +Y
Sbjct: 3   HGNRPIVLIKRRKHKRHEGGH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQQLVQIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T  +   D  +P      +      +     +    K    + +    R +
Sbjct: 62  FRTPLKVALTGGQRSSDSDSPIPGGGDDPTKKDGEVKKVVDMDAQKRQLDDIRLNRLREK 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    ++ +      + +    E+G  +       + + K  +  + P  ++ + A+  
Sbjct: 122 LDQLIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA- 180

Query: 189 KKRLQDLAKKIS 200
              L D+  KIS
Sbjct: 181 -PVLNDIPNKIS 191


>gi|307546933|ref|YP_003899412.1| flagellar motor protein MotB [Halomonas elongata DSM 2581]
 gi|307218957|emb|CBV44227.1| flagellar motor protein MotB [Halomonas elongata DSM 2581]
          Length = 317

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 3/174 (1%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILIS 227
            E       L +    + ++++  +DL ++I   +        +   + F+ T  G+ I 
Sbjct: 93  TEGERARVDLRQRSRPSERQRRAFRDLQRRIEMAIDADPDLKQLRDQLRFDMTPEGLRIQ 152

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNW 285
           ++D    PMF+  S    P    +L+ +  +L      +SI GHTD+  + N      NW
Sbjct: 153 LVDTEQRPMFELGSDRVAPYMRDLLRLMAPLLNELPNDLSISGHTDSLAYLNGFQGYGNW 212

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            LS  RA ++ + L+  G+   ++ +++GFA   +   ++P +  NRRI++LV 
Sbjct: 213 ELSSARANASRRELVAGGLDSAKLLRVAGFADQVVMPDTEPSDPVNRRIELLVL 266



 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ GSWKI  ADFMT LMA FLVMWI++      ++ + +YF+      +     +  
Sbjct: 19  HRHHGGSWKIALADFMTALMALFLVMWILSTASRQEREGVAEYFSTPLVAAIAGGDSVSM 78

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            +        + +    +          +     ++            +      +  ++
Sbjct: 79  SETVIPGGGPDPVYTEGERARVDLRQRSRPSERQRRAFRDLQRRIEMAIDADPDLKQLRD 138

Query: 146 SLTRDSEKGKDLCKSTDLEK 165
            L  D        +  D E+
Sbjct: 139 QLRFDMTPEGLRIQLVDTEQ 158


>gi|300722595|ref|YP_003711885.1| flagella protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629102|emb|CBJ89687.1| enables flagellar motor rotation, linking torque machinery to cell
           wall [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 179 SKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
             +++ A +  +RL  L +++    ++      +   +L +    G+ I IID+ N PMF
Sbjct: 100 QTKEVEASEENRRLNRLHQQLDQLIITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMF 159

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295
              S+        +LQ I  +L      IS+ GHTD+  + N      NW LS DRA ++
Sbjct: 160 MIGSAKVESYMSDILQAIAPILNDIPNKISLSGHTDSLKYANGQRGYSNWELSSDRANAS 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQG 343
            + L+  G+ E +I ++ G A         DP    NRRI I+V +++ 
Sbjct: 220 RRELLVGGLDEVKILRVVGMASTVSMQKGIDPNAPVNRRISIIVLNKEA 268



 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 4/192 (2%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N+  +I  KK    +   + GSWKI YADFMT +MAFFLVMW+I+        +I +Y
Sbjct: 2   RANNVSVIRVKKRKKHNPSQHGGSWKIAYADFMTAMMAFFLVMWLISIASPQELTSIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    +  +       D  NP      +      D  I + + +++    N++      +
Sbjct: 62  FRTPLQVAINKGHQSSDSTNPIPGGGDDV--FQQDGEIFRQTKEVEASEENRRLNRLHQQ 119

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +   +++ +  E   + L    ++G  +       + +    +  +     + + A+  
Sbjct: 120 LDQLIITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILQAIA- 178

Query: 189 KKRLQDLAKKIS 200
              L D+  KIS
Sbjct: 179 -PILNDIPNKIS 189


>gi|54308004|ref|YP_129024.1| flagellar motor protein MotB [Photobacterium profundum SS9]
 gi|46912430|emb|CAG19222.1| putative sodium-driven polar flagellar protein MotB [Photobacterium
           profundum SS9]
          Length = 310

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 115/329 (34%), Gaps = 55/329 (16%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78
            P     W   +AD  T+LM FF+++   +  D    K I           N      + 
Sbjct: 8   CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +  ++  P R     I++ + + I  T+ ++D   G +++    +R    +     
Sbjct: 68  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKRDAGKLTG--- 124

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                 KS D+   +N+                 +  +  + L 
Sbjct: 125 ---------------------GKSADVATQMNQNNQS-------------EMSESQEQLL 150

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + +   L   + D  ++    E     ++I I   +    F   S+   P+   ++++I 
Sbjct: 151 EVMQKALDREIQDGAIE---VENFGQQVVIRI---KEKGAFPAGSAFLQPKFRPLVRQIA 204

Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +++     +I I GHTD       + R NW LS  RA S  Q + +    + +  ++ G 
Sbjct: 205 DLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEQVKGFDHKRLRVVGL 264

Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           A      ++        NRR++I +   +
Sbjct: 265 ADTAPLNSNKTAEERKVNRRVEISIMQGK 293


>gi|260776526|ref|ZP_05885421.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607749|gb|EEX34014.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 300

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 116/321 (36%), Gaps = 47/321 (14%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++   +  D    K I           N      +     I  +
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60

Query: 87  QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     ID+ + +   IT+ +++   G +++    QR                  
Sbjct: 61  EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                      D  K T  +      ++        E+  + +  + L+ L + I   L 
Sbjct: 103 -----------DKGKQTGGKSPDTSTQDSQNSESDSEQQQSAELSQELETLMESIKKALE 151

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +    ++    E     I I I   R    F + S+   P+   ++++I E++     
Sbjct: 152 REIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPG 205

Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           ++ + GHTD       + R NW LS  RA S  Q + K      +  ++ G A  +    
Sbjct: 206 IVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRDFSHQRLQVRGMADTQPLGP 265

Query: 324 SDPM--NSANRRIDILVEDRQ 342
           +D     S NRR++I +   +
Sbjct: 266 NDTEAQRSRNRRVEISIMQGE 286


>gi|90410908|ref|ZP_01218922.1| flagellar motor protein [Photobacterium profundum 3TCK]
 gi|90328121|gb|EAS44432.1| flagellar motor protein [Photobacterium profundum 3TCK]
          Length = 310

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 114/329 (34%), Gaps = 55/329 (16%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78
            P     W   +AD  T+LM FF+++   +  D    K I           N      + 
Sbjct: 8   CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +  ++  P R     I++ + + I  T+ ++D   G +++    +R    +     
Sbjct: 68  KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKRDAGKLTGG-- 125

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             QS      + ++++                                  +  +  + L 
Sbjct: 126 --QSADVATQMNQNNQS---------------------------------EMSESQEQLL 150

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + +   L   + D     +  E     ++I I   +    F   S+   P+   ++++I 
Sbjct: 151 EVMQKALDREIQDGA---IEVENFGQQVVIRI---KEKGAFPAGSAFLQPKFRPLVRQIA 204

Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +++     +I I GHTD       + R NW LS  RA S  Q + +    + +  ++ G 
Sbjct: 205 DLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEQVKGFDHKRLRVVGL 264

Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           A      ++        NRR++I +   +
Sbjct: 265 ADTAPLNSNKTAEERKVNRRVEISIMQGK 293


>gi|300717114|ref|YP_003741917.1| flagellar motor protein [Erwinia billingiae Eb661]
 gi|299062950|emb|CAX60070.1| Flagellar motor protein [Erwinia billingiae Eb661]
          Length = 346

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 3/200 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT  S+  + +       +   ++       +  +       + RL  L +K+   +
Sbjct: 67  KVALTGGSKSSESISVIPGGGEDPTQKSGEVHKVVDMDAQKRKLDEIRLNRLREKLDQLI 126

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  ++      G+ I IID  N PMF    +   P    +L+ I  +L   
Sbjct: 127 ESDPRLKALRPHLIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIAPILNDI 186

Query: 263 TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              IS+ GHTD   + N      NW LS DRA ++ + L+  G+   ++ ++ G A    
Sbjct: 187 PNKISLAGHTDDFQYANGDRGYSNWELSADRANASRRELVTGGLDSGKMLRVVGMADTMS 246

Query: 321 KIASDPMNSANRRIDILVED 340
                  ++ NRRI +LV +
Sbjct: 247 LKNRGADDAVNRRISLLVLN 266



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 2/192 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + N+  II+ KK          GSWKI YADFMT +MAFF+VMW+++  +      I  Y
Sbjct: 2   KHNNHPIILVKKKKHKRHEGGHGSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T      +  +      ++    S + H   +    K      +    R +
Sbjct: 62  FKTPLKVALTGGSKSSESISVIPGGGEDPTQKSGEVHKVVDMDAQKRKLDEIRLNRLREK 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    S+ +      + +    E+G  +       + + K     + P  ++ + A+  
Sbjct: 122 LDQLIESDPRLKALRPHLIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIA- 180

Query: 189 KKRLQDLAKKIS 200
              L D+  KIS
Sbjct: 181 -PILNDIPNKIS 191


>gi|240137207|ref|YP_002961676.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1]
 gi|240007173|gb|ACS38399.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1]
          Length = 468

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 10/265 (3%)

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
            D +     S   +      + I + S+   +     K             +   +    
Sbjct: 199 LDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSPE 258

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR----------LQ 193
              L   +E      + T L K+       F P         +               L 
Sbjct: 259 AAPLASPAEAKPAPPEPTLLAKAEAPPAKDFTPAKDLAPAKELAAPADQAAKAAETAALS 318

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            L  +I+  +  L        V    T  G+LISI D+ N  MF   S+ P P+ +  L+
Sbjct: 319 ALKAEIARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALE 378

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +I 
Sbjct: 379 RIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIE 438

Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338
           G+A  + +IA++P  + NRRI+IL+
Sbjct: 439 GYADRQPRIANNPKAAENRRIEILL 463



 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 3/180 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   DRAHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D Q+ P   + +      D    +   D      ++ ++    +
Sbjct: 63  NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKGDAAGAPGSRARESALFQ 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+               ++          +        + F P   +   L  +R
Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180


>gi|291617784|ref|YP_003520526.1| MotB [Pantoea ananatis LMG 20103]
 gi|291152814|gb|ADD77398.1| MotB [Pantoea ananatis LMG 20103]
 gi|327394202|dbj|BAK11624.1| chemotaxis protein MotB [Pantoea ananatis AJ13355]
          Length = 424

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 3/200 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT                    K+E      +  +       + RL  L +K+   +
Sbjct: 67  KVALTGGQRSSDSSSPIPGGGDDPTKKEGEVKKVVDMDAQKRKLDEIRLNRLREKLDQLI 126

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  ++      G+ I IID +N PMF   S+   P    +L+ I  VL   
Sbjct: 127 EADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDI 186

Query: 263 TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              ISI GHTD   +        NW LS DRA ++ + L+  G+   +I +I G A    
Sbjct: 187 PNRISIAGHTDDIQYAGGDKGYSNWELSADRANASRRELVIGGLDGGKILRIVGMADTMK 246

Query: 321 KIASDPMNSANRRIDILVED 340
                  ++ NRRI +LV +
Sbjct: 247 LKNRGGDDAVNRRISLLVLN 266



 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 3/192 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   ++I+K+        + GSWKI YADFMT +MAFF+VMW+++         I +Y
Sbjct: 3   HGNRPIVLIRKRKHKKHEGGH-GSWKIAYADFMTAMMAFFMVMWLLSIASPQQLIQIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T  +   D  +P      +      +     +    K      +    R +
Sbjct: 62  FQTPLKVALTGGQRSSDSSSPIPGGGDDPTKKEGEVKKVVDMDAQKRKLDEIRLNRLREK 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    ++ +      + +    E+G  +       + + K  +  + P  ++ + A+  
Sbjct: 122 LDQLIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA- 180

Query: 189 KKRLQDLAKKIS 200
              L D+  +IS
Sbjct: 181 -PVLNDIPNRIS 191


>gi|319781670|ref|YP_004141146.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167558|gb|ADV11096.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 445

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 10/272 (3%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
             Y +PF  +  +       +Q     +  +     I+    K           + K   
Sbjct: 179 ASYRDPFEPDFWS-------QQVAAPGAEASAQRTKIEGDPAKPGDKTAETQVLKVKAVP 231

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
            +   +  L+    S+   N  T  + + K       + K+   E    + P   EK   
Sbjct: 232 PVAAPLEPLAKDATSKQAANPATALAGETKPDGTKAAVAKA-EPEAQKAVQPDIGEKAPT 290

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               K   D+ ++++        D +  GV  E T  G++ISI DQ +  MF+  S++P 
Sbjct: 291 AAAVKAAADVKRQLADAFKP--GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSALPR 348

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            E ++ ++KIG ++      ISI GHTDA PFR+ + DNWRLS  RA+SAY +L++ GV 
Sbjct: 349 RELVLAMEKIGRIVNSQKGTISINGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVD 408

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           E RI++++GFA  + KIA+DP+ +ANRRI+IL
Sbjct: 409 ERRITEVAGFADRQPKIAADPLAAANRRIEIL 440



 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 12/203 (5%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S  + +Q   + II+++     D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK
Sbjct: 2   SVANADQGRHEIIIVRRSHDDHDEAHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTK 61

Query: 63  KAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
            A+  YFNP    +  ++ KG+ D  + P        D          + +   G++ +K
Sbjct: 62  AAVASYFNPVKLVDRNSSRKGLEDLGDGPRAMGLTADDPQEATSKAGQNGNAGAGASERK 121

Query: 122 KQYQRLE-----------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           +  Q  +           +    LS          ++++  + G                
Sbjct: 122 QDKQEPQQAEHSDDHLFADPYAVLSEIATDTGVMQNVSQKGDGGVQAAGPATGASGGASY 181

Query: 171 ENYFLPPLSKEKILAMKRKKRLQ 193
            + F P    +++ A   +   Q
Sbjct: 182 RDPFEPDFWSQQVAAPGAEASAQ 204


>gi|239817126|ref|YP_002946036.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239803703|gb|ACS20770.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 315

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 12/223 (5%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
             KQ + +  +         S   K+S +     G  +  ST  +  + + +        
Sbjct: 50  SPKQREGIAEHFRMPLKVALSGGEKSSTSISVVPGGGMDPSTRADGEVQRADAEDDADAD 109

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +   +  +  K +++            V       +L + T  G+ + I+D  N PMFD 
Sbjct: 110 RLASMKERLDKLIEN----------SPVFRQFRSQILIDITTEGLRLQIVDNENRPMFDL 159

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQ 297
           +S+  +P    +L+++G  L      I++ GHTDA  + N  R   NW LS DRA ++ +
Sbjct: 160 ASAQVVPHMRAILRELGPTLNELPNKITLSGHTDAFVYSNGDRSYGNWELSADRANASRR 219

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            L+  G++E+++ ++ G A       S+P N  NRRI I++ +
Sbjct: 220 ELVMGGMAENKVLRVVGLADSMHLDRSNPRNPINRRISIILLN 262



 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++ ++VA      + G WKI YADFMT +MAFFLVMW+++ T    ++ I ++F    K 
Sbjct: 8   VVVRRVAAHGGGGHGGGWKIAYADFMTAMMAFFLVMWLLSNTSPKQREGIAEHFRMPLKV 67

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++  +      +       +      D  + +   +    +       +RL+  I    
Sbjct: 68  ALSGGEKSSTSISVVPGGGMDP-STRADGEVQRADAEDDADADRLASMKERLDKLIENSP 126

Query: 136 NSQQ 139
             +Q
Sbjct: 127 VFRQ 130


>gi|254559218|ref|YP_003066313.1| chemotaxis protein MotB [Methylobacterium extorquens DM4]
 gi|254266496|emb|CAX22260.1| Chemotaxis protein MotB [Methylobacterium extorquens DM4]
          Length = 474

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 1/247 (0%)

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
           +S  + +  +  +  +   + L + S    K                           ++
Sbjct: 224 QSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSAEAAPLASPAEAKPAPPEPTLLAKAEA 283

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
              KD   + DL  + +      L   + +   A +    L  L  +I+  +  L     
Sbjct: 284 PPAKDFAPAKDLAPAKDLAPAKELAAPADQAAKAAETAA-LSALKAEIARAVPSLPNGAP 342

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              V    T  G+LISI D+ N  MF   S+ P P+ +  L++I ++L      + +RGH
Sbjct: 343 APQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALERIAKILNSRPGRVVVRGH 402

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +I G+A  + +IA++P  + N
Sbjct: 403 TDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIEGYADRQPRIANNPKAAEN 462

Query: 332 RRIDILV 338
           RRI+IL+
Sbjct: 463 RRIEILL 469



 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 3/180 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   DRAHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D Q+ P   + +      D    +   D      ++ ++    +
Sbjct: 63  NPVKLAEVTHDRKGVNDPQDTPNDPAPS-GKGKGDGGNAEGKGDAAGAPGSRARESALFQ 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+               ++          +        + F P   +   L  +R
Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180


>gi|261821136|ref|YP_003259242.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163]
 gi|261605149|gb|ACX87635.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163]
          Length = 350

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT  S+                +++      +  + +     + RL  L +++   +
Sbjct: 65  KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEARLNKLRERLDQLI 124

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  +L E    G+ I IID +N PMF   S+   P    +L+ I  +L   
Sbjct: 125 EADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319
              +SI GHTD   +        NW LS DRA ++ + L   G+S+ ++ ++ G A    
Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELTFGGLSDGKVLRVVGMAATMS 244

Query: 320 LKIASDPMNSANRRIDILVEDRQG 343
           LK A+   ++ NRRI +LV  +Q 
Sbjct: 245 LKQATSGNDAINRRISLLVLSKQA 268



 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+     D  +P      +      +      + +++      +    R   +
Sbjct: 62  TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEARLNKLRERLD 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               ++ +      + L    E+G  +       + + K  +  + P  ++ + A+ 
Sbjct: 122 QLIEADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178


>gi|163850073|ref|YP_001638116.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661678|gb|ABY29045.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
          Length = 468

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 105/270 (38%), Gaps = 2/270 (0%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P    L   ++    +   P++ S   I         + +      +          E  
Sbjct: 194 PADSRLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGIKLASAEPMPLTIPSAEPT 253

Query: 131 IFYLSNSQ--QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 +        K +    +   K                         ++      
Sbjct: 254 KPSAEAAPLASPAEAKPAPPEPTLLAKAEAPPAKDLAPAKDLAPAKELAAPADQAAKAAE 313

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +  L  L  +I+  +  L        V    T  G+LISI D+ N  MF   S+ P P+ 
Sbjct: 314 RAALSALKAEIARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKV 373

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +  L++I ++L      + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E R
Sbjct: 374 VKALERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEAR 433

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           I +I G+A  + +IA++P  + NRRI+IL+
Sbjct: 434 IDRIEGYADRQPRIANNPKAAENRRIEILL 463



 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 9/248 (3%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   DRPHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D Q+ P   + +      D    +   D      ++ ++    +
Sbjct: 63  NPVKLAEVTHDRKGVNDPQDTPNDPAPS-GKGKGDGGNAEGKGDAAGAPGSRARESALFQ 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+               ++          +        + F P   +   L  +R
Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180

Query: 189 KKRLQDLAKKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
                 L    ++            A +  +    E+ +     S+ D         +S+
Sbjct: 181 TDNPGALDSAATAPADSRLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGIKLASA 240

Query: 243 IPLPETIV 250
            P+P TI 
Sbjct: 241 EPMPLTIP 248


>gi|117928060|ref|YP_872611.1| OmpA/MotB domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648523|gb|ABK52625.1| OmpA/MotB domain protein [Acidothermus cellulolyticus 11B]
          Length = 290

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 109/324 (33%), Gaps = 67/324 (20%)

Query: 24  DDTPNNLGS---WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                +  S   W + Y D +T+LM  F+V++ I+  D      +               
Sbjct: 16  HAEGGHGPSHERWLLTYTDMVTLLMVLFIVLFAISVVDKKKFAELAD------------- 62

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
                              L+     T   +    G  +  K     +  +    +   +
Sbjct: 63  ------------------GLAHQFGSTPKVLPAGTGVMDGGKTANHDQGQLTNNPDQPIA 104

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                                    S  ++ +      +     A   ++   D  ++I 
Sbjct: 105 PI-----------------------SDAEQSHAQPSAQASASAAANAERETFLDAERRIE 141

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + L    A  +   V F     G+++SI+   +  +FD   +   P    VL  I  VL 
Sbjct: 142 AALQ---AKGLADSVKFRVETRGLIVSIV--TDQVLFDTGKADLRPIGRQVLDAIAPVLR 196

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
                IS+ GHTD  P        NW LS  RA +  + L+ + G+ E+R+S  +G+A  
Sbjct: 197 GLPNDISVEGHTDNVPITGGPFASNWELSAIRATTVLRYLVSNDGLPEERMSA-TGYADT 255

Query: 319 RLKIASDP--MNSANRRIDILVED 340
           R  + +D       NRR+DI+V  
Sbjct: 256 RPLVPNDTPEHRQQNRRVDIVVLS 279


>gi|115523189|ref|YP_780100.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisA53]
 gi|115517136|gb|ABJ05120.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 423

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 2/266 (0%)

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           G     A +  FD  + P  SS    D ++      N    +  +   + Q +R    + 
Sbjct: 155 GVKGGEAYRDPFDPISWPMASSSPLEDKALGRKEIGNLPFDEDAAGLIEGQGRRPSQGVP 214

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + +  +               D  K   L      +        +  +      +   
Sbjct: 215 DATAAPAAPSEAAQPPPAKPDQPDNPKPVRLFADEGPKLQPPAERAAAPRPDPAPAQSSA 274

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L   I++ L+ L A +    V    T  G+LI++ D  N  MF   S+ P P  +  L
Sbjct: 275 SKLQAAINAALASLGAAHPATEV--RETSEGLLINLTDDANYGMFANGSAEPTPGLVRTL 332

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            KI  +++    ++ +RGHTD  P+R+   DNWRLS  RA+ A+ +L++ G+   RI +I
Sbjct: 333 DKITPLISQQRGLVIVRGHTDDRPYRSADYDNWRLSTARAHMAFHMLIRGGLDAKRIERI 392

Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338
            G+A  R K  +DP    NRRI+IL+
Sbjct: 393 EGYADRRPKTPNDPSAPQNRRIEILI 418



 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 6/191 (3%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           +Q+  + III+++  +D      G WKI YADFMT +MAFFLVMW+++AT  +T++++  
Sbjct: 3   DQDRPELIIIRRRSDLDVEEK-SGVWKIAYADFMTAMMAFFLVMWLMSATTPETRESVAT 61

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFNP      T      D +   +    +       E         K G   Q+ Q  + 
Sbjct: 62  YFNPIKLTDSTP-----DRKGLHDAKRVDPGKADEGETARPKPEPDKAGEATQRPQLPKT 116

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            ++   L     +   + +                 ++ +   E Y  P       +A  
Sbjct: 117 HHDEAALFRDPYTILSEIAGAPPPLAQNGTSLDPGRKEGVKGGEAYRDPFDPISWPMASS 176

Query: 188 RKKRLQDLAKK 198
                + L +K
Sbjct: 177 SPLEDKALGRK 187


>gi|320157195|ref|YP_004189574.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O]
 gi|319932507|gb|ADV87371.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 119/322 (36%), Gaps = 49/322 (15%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++   +  D    K I           N      +     I  +
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60

Query: 87  QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     ID+ + +   IT+ +++   G +++    QR                  
Sbjct: 61  EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                      D  K T  +      +        +++  +    K ++ L + I   L 
Sbjct: 103 -----------DQGKMTGGQSPETSTQTNQNTEQQQQQQQSEAMSKEMETLMESIKKALE 151

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +    ++    E     I+I +   R    F + S+   P+   ++++I E++     
Sbjct: 152 REIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLVRQIAELVKDVPG 205

Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ ++ G A     +
Sbjct: 206 IVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVRGFSHQRL-RVRGMADTDPLV 264

Query: 323 ASDP--MNSANRRIDILVEDRQ 342
            +D     + NRR++I +   +
Sbjct: 265 DNDTEENRARNRRVEISIMQGE 286


>gi|13472587|ref|NP_104154.1| flagellar motor protein MotB [Mesorhizobium loti MAFF303099]
 gi|14023333|dbj|BAB49940.1| flagellar motor protein; MotB [Mesorhizobium loti MAFF303099]
          Length = 471

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 13/283 (4%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
             Y +PF  +  +        +   +R       L   +   ++ V              
Sbjct: 186 ASYRDPFEPDFWSQQVAAPAAEASAQRPKIEGDPLKPGDKAAESQVAKVKAVPPAPPVKD 245

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS------ 179
                +        +   K   T+ S       K+ D +   +K         +      
Sbjct: 246 APLEPLAESGKDAAATMAKAGETKASGAKASDAKTGDAKTEDSKAVAAAKADTAAAAQET 305

Query: 180 -----KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
                 EK       K   D+ ++++        D +  GV  E T  G++ISI DQ + 
Sbjct: 306 AAPEAGEKPPTAAAVKAAADVKQQLADAFKP--GDKLHDGVSVEATDKGVVISITDQLDF 363

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            MF+  S++P  E ++ ++KIG ++      ISI GHTDA PFR+ + DNWRLS  RA+S
Sbjct: 364 GMFEVGSAVPSRELVLAMEKIGRIVNSQKGTISINGHTDARPFRSASYDNWRLSTARAHS 423

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           AY +L++ GV E RI++++GFA  + K  +DP+++ANRRI+IL
Sbjct: 424 AYYMLVRGGVDERRITEVAGFADRQPKDPADPLSAANRRIEIL 466



 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 6/177 (3%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           D +    + II+++     D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+
Sbjct: 15  DADHGRHEIIIVRRAHDDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAV 74

Query: 66  EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             YFNP    +  ++ KG+ D  + P             +     +     GS++ KK  
Sbjct: 75  ASYFNPVKLVDRNSSRKGLEDLGDGPSAIGSTADKPQQTKAKPGQAGSGDAGSSDAKKDK 134

Query: 125 QRLENNIFYLSNSQQS-----EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           Q+ +    +L     +           +   S+KG    +S       +   +Y  P
Sbjct: 135 QQPQQTDDHLFADPYAVLSEIATDTGVMQNVSQKGDGGAQSAGPATGASGGASYRDP 191


>gi|91793918|ref|YP_563569.1| flagellar motor protein MotB [Shewanella denitrificans OS217]
 gi|91715920|gb|ABE55846.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 318

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 119/337 (35%), Gaps = 54/337 (16%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P     W   +AD M++LM FF+++      D    K I           N  
Sbjct: 3   QAKCVCPPVGAPLWLATFADLMSLLMCFFVLLLSFAEMDVMKFKQIAGSMKYAFGVQNKV 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130
               +     +   +  P R     I++   +   +T+ +++ + G  +     Q+ +  
Sbjct: 63  EVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTQQTIEYQAGEDDSAGGVQKQQG- 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                                            E+   +           +K  +   ++
Sbjct: 122 ---------------------------------EQRGGEASATAQETAEAKKSESSSSQE 148

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            + +  KK++  L+  + D     +  E+    I+I I   R    F   S    P+   
Sbjct: 149 NINEQVKKMAEQLNEEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPKFKP 202

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDR 308
           V++ IG +L     +I++ GHTD     N     NW LS  RA +     M+  G  E R
Sbjct: 203 VIRSIGSLLKDVPGIITVAGHTDGMHISNELYSSNWDLSSARAVAVAHEFMRVPGFDETR 262

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
           + K+ G A +   ++++     S NRR++I +E  + 
Sbjct: 263 M-KVVGMASNDQLVSNESSENRSQNRRVEITIEQGKA 298


>gi|242238952|ref|YP_002987133.1| flagellar motor protein MotB [Dickeya dadantii Ech703]
 gi|242131009|gb|ACS85311.1| OmpA/MotB domain protein [Dickeya dadantii Ech703]
          Length = 377

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR--LQD 194
           +Q +E+ +  L      G  +  +++       +  +    +S++      R +   L  
Sbjct: 54  AQIAEYFRTPLKIAITSGPKMSDASNPIPGGGADPTHQEGDVSRQIDTMDGRLEEIKLNK 113

Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L +++   +        ++  +L E    G+ I IID  N PMF   S+   P    +L+
Sbjct: 114 LRERLDQLIEADPRLRALRPHLLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILR 173

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            I  +L      IS+ GHTD + +        NW LS DRA ++ + L+  G++E ++ +
Sbjct: 174 AIAPILNDIPNKISLSGHTDDARYATGERGYSNWELSADRANASRRELIAGGLTEGKVLR 233

Query: 312 ISGFAHHR-LKIASDPMNSANRRIDILVEDRQG 343
           + G A    LK A D  ++ NRRI ++V ++Q 
Sbjct: 234 VVGMADTMNLKQAKDGSDAINRRISLVVLNKQA 266



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+   + D  NP      +      D     +++D ++      K  +RL+  
Sbjct: 62  TPLKIAITSGPKMSDASNPIPGGGADPTHQEGDVSRQIDTMDGRLEEIKLNKLRERLDQL 121

Query: 131 IFYLSN 136
           I     
Sbjct: 122 IEADPR 127


>gi|56461234|ref|YP_156515.1| flagellar motor protein MotB [Idiomarina loihiensis L2TR]
 gi|56180244|gb|AAV82966.1| Flagellar motor protein [Idiomarina loihiensis L2TR]
          Length = 312

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 49/347 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M S   +++E +           +  P  L  W   +AD MT+LM FF+++   +  D  
Sbjct: 1   MASEKVRDEEQED---------CNCPPPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVL 51

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
             K I               K     QN  E     K    I +       +     T Q
Sbjct: 52  KFKQIAGSM-----------KYALGVQNKIEVKDIPKGTSVIAQEFRPGRPEPTPIETIQ 100

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           ++  +  +  + +          + +     E+G     S D +K    E    +  +SK
Sbjct: 101 QQTVEMTQQMLEFQEGESDFAGGQQT-----ERGGQESDSADDQKEAEAENTEAMTQVSK 155

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E             L ++I   L   +       +  E     I+I I   R    F + 
Sbjct: 156 E-------------LMRRIERQLENEIK---AGTIELEQHGQQIIIRI---REQGSFPEG 196

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY-QV 298
           S+   P+   ++Q++   L      ++I GH+D     +     +W LS  RA +   ++
Sbjct: 197 SAFLQPQFRPIIQQVAGALKDIPGEVTISGHSDNEKLVSEIYSSDWDLSSKRAVAVAEEM 256

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
           L     SEDR+  + G++  +  + ++       NRR++I +   + 
Sbjct: 257 LKVDDFSEDRLV-VMGYSDTKPLVPNNSEENRKRNRRVEISIMQGKA 302


>gi|227112504|ref|ZP_03826160.1| flagellar motor protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326903|ref|ZP_03830927.1| flagellar motor protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 351

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT  S+                +++      +  + +     + RL  L +++   +
Sbjct: 65  KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLI 124

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  +L E    G+ I IID +N PMF   S+   P    +L+ I  +L   
Sbjct: 125 EADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319
              +SI GHTD   +        NW LS DRA ++ + L+  G+S+ ++ ++ G A    
Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMS 244

Query: 320 LKIASDPMNSANRRIDILVEDRQG 343
           LK A+   ++ NRRI +LV  RQ 
Sbjct: 245 LKQATGGNDAINRRISLLVLSRQA 268



 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+     D  +P      +      +      + +++      +    R   +
Sbjct: 62  TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               ++ +      + L    ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 122 QLIEADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178


>gi|209547941|ref|YP_002279858.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533697|gb|ACI53632.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 447

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 6/278 (2%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           E Y +PF  +  T    +            ++              D+K       ++  
Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKSAPPGKSDEQAAESATTEIAKVEDMKPIPLTTDQKAA 235

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           +        ++ +  +  K S  + +E  K   +    +K  + +++        E+   
Sbjct: 236 QEAKGAAEATDGKAPDD-KKSGDKKAEDKKAPAQKDAAQKDADHQKDADKSAAETEQQQQ 294

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            + ++    +A++I     G +A  + +G+    +  G+L+SI DQ +  MFD  S++P 
Sbjct: 295 KEAEQLQAQIAQRI-----GGIAGKLAEGLTVTASEGGLLVSISDQSDDSMFDIGSAVPR 349

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            E ++ ++KIG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ 
Sbjct: 350 QEMVLAMEKIGAILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLD 409

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           E RIS++SGFA  RLK+ SDP N+ NRRI+ILV+  +G
Sbjct: 410 EKRISQVSGFADRRLKLPSDPFNATNRRIEILVQADRG 447



 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 8/198 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D   ++ G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGKNEIIIVKRHGGGDHDGSHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK ++  YFNP      K      K   D  E    +  S+ K +   D   + +  D  
Sbjct: 61  TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEENPNDGKASADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAQDSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKK 190
            F P    +++      K
Sbjct: 181 PFDPDFWTKQVEVTTAGK 198


>gi|37525779|ref|NP_929123.1| flagellar motor protein MotB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785208|emb|CAE14143.1| chemotaxis protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 333

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMF 237
             E + A    ++L  L +++   +        ++  +L +    G+ I IID+ N PMF
Sbjct: 100 QVEVVEANDEARKLNRLREQLDQLIITDPRLKALRPHLLIDMMDEGLRIQIIDRENRPMF 159

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295
              S+        +L+ I  +L      IS+ GHTD   + N      NW LS DRA ++
Sbjct: 160 MVGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDDLKYANGERGYSNWELSADRANAS 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            + L+  G+ E +I ++ G A        D     NRRI ILV ++Q 
Sbjct: 220 RRELLIGGLDEVKILRVVGMASTVRLKQEDASAPVNRRISILVLNKQA 267



 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +  +  +I  K+   +   ++ GSWKI YADFMT +MAFFLVMW++  +       I +Y
Sbjct: 2   KTRNVSVIRVKRRKRNGIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           F    +  +   +   D  NP     ++ +    D
Sbjct: 62  FRTPLQVAINKGERSSDSSNPIPGGGEDVLHQEGD 96


>gi|88859188|ref|ZP_01133829.1| flagellar motor protein [Pseudoalteromonas tunicata D2]
 gi|88819414|gb|EAR29228.1| flagellar motor protein [Pseudoalteromonas tunicata D2]
          Length = 290

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 121/314 (38%), Gaps = 38/314 (12%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
              +AD M++LM FF+++  ++  D    K I               K  F  QN  E  
Sbjct: 1   MGTFADLMSLLMCFFVLLLAMSEMDVLKFKQIAGSM-----------KFAFGVQNKLEVK 49

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
              K    I         D     T Q++  +  +  + + +  ++S   +     +   
Sbjct: 50  DIPKGTSVIAMEFRPGKPDPSPIETIQQQTSEMTQQMLEFQAGDEESAGGRQEQRGNKRG 109

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G+    +     +  K  +                ++++ +L KKI+  L   + D  ++
Sbjct: 110 GESQSTAKSEAAASEKTAD----------------QEQVNELVKKIAQQLEEQIQDGAIE 153

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
               E+    I+I I   R    F   S+   P+   ++QKI ++L      I++ GHTD
Sbjct: 154 ---LESLGQQIIIRI---RENGSFPSGSAFLQPQFKPIIQKIADLLKDVPGEITVSGHTD 207

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS-- 329
                N    +NW LS  R+ +    + K SG  ++R+  + G A  R  + ++   S  
Sbjct: 208 DYQVSNELYFNNWDLSAKRSVAVASEMQKVSGFDKNRMV-VIGHADTRPLVPNEDSESRK 266

Query: 330 ANRRIDILVEDRQG 343
            NRR++I +   + 
Sbjct: 267 RNRRVEISIMQGKA 280


>gi|85859043|ref|YP_461245.1| chemotaxis protein [Syntrophus aciditrophicus SB]
 gi|85722134|gb|ABC77077.1| chemotaxis protein [Syntrophus aciditrophicus SB]
          Length = 254

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +DL  +I   +   +   +   V+      G+ I I+D+  + MF   S+ P  +   +L
Sbjct: 106 KDLEHRIKIAIDEKL-QTLKDQVMVSIVDNGLKIQIVDKEGSLMFPLGSAEPTFKAKEIL 164

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           + + E L  S   I + GHTDA+PFR+    NW LS  RA +A + L  + +   RI+++
Sbjct: 165 RIVSENLKDSPNRIIVEGHTDAAPFRSAQTTNWELSTARASAARRELENNSIDPGRIARV 224

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            G+A   L I  +PM++ NRRI I+V   +
Sbjct: 225 IGYADQELFIPQNPMDARNRRISIIVIQPK 254



 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +    III+K        ++ GSWK+ YADF+T +MAFFL++W+I     + + A+ +Y
Sbjct: 2  DDQQPVIIIRKVKKRHHDGHHGGSWKVAYADFVTAMMAFFLLLWLITMVSPEKRSAVAEY 61

Query: 69 FNPFGK 74
          F  F  
Sbjct: 62 FKTFSV 67


>gi|27381973|ref|NP_773502.1| flagellar motor protein MotB [Bradyrhizobium japonicum USDA 110]
 gi|27355143|dbj|BAC52127.1| motB [Bradyrhizobium japonicum USDA 110]
          Length = 445

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 8/297 (2%)

Query: 53  IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
            + + ++D  K  + Y +PF       +     + +    S         D        +
Sbjct: 149 ALTSAEEDGLKGGDAYRDPFDPGYWKLAPQASKDSDRIIESEPKPNAPVRDNATGTGQGE 208

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
            +   +        +  N    S S             S        S         + +
Sbjct: 209 PQARRSKTDDAGGSVAPNADASSASLSPLLPPGPAPAPSPSQSSREGSAQANAQSGAQAS 268

Query: 173 YF-------LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
                     P  S+ +  A  ++  ++ L   I+  LS  +               G+L
Sbjct: 269 AAAQGRPGDTPKDSEPRDAAQTQQPTVKQLQSAIAEALSD-IKAGAGPAAEVRQVEEGLL 327

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           +S+ D  +  MF   S+ P PE I V+ KIG +L     +I +RGHTD  P+++   DNW
Sbjct: 328 VSLTDDTSFGMFAVGSAEPRPELIRVIDKIGPLLMKRQGMIIVRGHTDNRPYKSETYDNW 387

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           RLS  RA  AY +L++SGV   RI  + G+A  R K+ +DP  + NRRI+IL+ +++
Sbjct: 388 RLSTARAQMAYYMLVRSGVDAQRIEHVEGYADRRPKLQNDPAAAQNRRIEILIREKR 444



 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 8/191 (4%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            +   + +I++++ A  +  ++ G WKI YADFMT +MAFFLVMW++NA + D K+ +  
Sbjct: 2   EEVKQELVIVRRRSAFAEEAHHGGVWKIAYADFMTAMMAFFLVMWLLNALNQDQKQVVAS 61

Query: 68  YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YFNP        A KG+ D      +      +            + + G +   ++   
Sbjct: 62  YFNPIKLAENAPAPKGLKDLS----KKEPTTFEGQDGRRQPAGPSEERRGDSPTAEKPPF 117

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEK---GKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            E  + +           NS  + S +   G       D  K  +   + F P   K   
Sbjct: 118 YEEKVLFRDPYATLAEIANSANQASGQRRAGALTSAEEDGLKGGDAYRDPFDPGYWKLAP 177

Query: 184 LAMKRKKRLQD 194
            A K   R+ +
Sbjct: 178 QASKDSDRIIE 188


>gi|222084880|ref|YP_002543409.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
 gi|221722328|gb|ACM25484.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
          Length = 452

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 2/288 (0%)

Query: 56  ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           +   +  + + Q  N   K    A++          ++ ++  D        + S   K 
Sbjct: 139 SVLAEIAQQVGQQANVSAKGEGGAAQSGPATGADGGQAYRDPFDPDFWTKQVQVSSASKK 198

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
            +  Q  +  +         +   +        +          S   +K    +E    
Sbjct: 199 ANEEQAAKSDQSAKGEVIALSKATAADSGEPTDKPQTPEDQPTLSDQRQKGQGADEKISS 258

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
              SK+      +++  ++L + I + +SG VA  + +GV   +   G+L++I DQ N P
Sbjct: 259 ATQSKDIAPPKDQQQSAKELQQAIQAEISG-VAGQLAEGVQVASAEGGLLVTISDQSNDP 317

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294
           MF+  S++P  E ++ + KIG++LA+   VI IRGHTD  P+      DNWRLSLDRA S
Sbjct: 318 MFNIGSAVPRREMVLAMGKIGKILANRKGVILIRGHTDGRPYMVGGHNDNWRLSLDRAQS 377

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           AY +L  +G+ E RI ++SGFA  RLK+ +DP N ANRRI+IL+ED +
Sbjct: 378 AYYMLTSTGLDEKRIEQVSGFADRRLKLPNDPFNDANRRIEILIEDAK 425



 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 10/216 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN  GD+NQ   + II+K+  A +    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MND-GDQNQGKHEIIIVKRHGANEHEGGHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 59

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TK ++  YFNP        ++    +        +N+     +E    N    K G    
Sbjct: 60  TKASVASYFNPIKLADEKPTEKGLKKPVDQADGKKNEAKSQNEETNPNNGKSAKTGEDQT 119

Query: 121 KKQYQR--------LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
                +         EN    L+   Q    + +++   E G                 +
Sbjct: 120 STSGDQTSYSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAAQSGPATGADGGQAYRD 179

Query: 173 YFLPPLSKEKI-LAMKRKKRLQDLAKKISSTLSGLV 207
            F P    +++ ++   KK  ++ A K   +  G V
Sbjct: 180 PFDPDFWTKQVQVSSASKKANEEQAAKSDQSAKGEV 215


>gi|213024875|ref|ZP_03339322.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 189

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           +   +  +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ G
Sbjct: 16  LRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAG 75

Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD  P+ N      NW LS DRA ++ + L+  G+   ++ ++ G A         P +
Sbjct: 76  HTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDD 135

Query: 329 SANRRIDILVEDRQG 343
           + NRRI +LV ++Q 
Sbjct: 136 AINRRISLLVLNKQA 150


>gi|253688988|ref|YP_003018178.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755566|gb|ACT13642.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 350

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT  S+                +++      +  + +     + RL  L +++   +
Sbjct: 65  KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLI 124

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  +L E    G+ I IID +N PMF   S+   P    +L+ I  +L   
Sbjct: 125 EADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319
              +SI GHTD   +        NW LS DRA ++ + L+  G+S+ ++ ++ G A    
Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMN 244

Query: 320 LKIASDPMNSANRRIDILVEDRQG 343
           LK A+   ++ NRRI +LV  RQ 
Sbjct: 245 LKQATGGNDAINRRISLLVLSRQA 268



 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+     D  +P      +      +      + +++      +    R   +
Sbjct: 62  TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               ++ +      + L    ++G  +       + + K  +  + P  ++ + A+ 
Sbjct: 122 QLIEADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178


>gi|332992377|gb|AEF02432.1| flagellar motor protein MotB [Alteromonas sp. SN2]
          Length = 309

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 119/325 (36%), Gaps = 39/325 (12%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++      P  L +W   +AD M++LM FF+++   +  D    K I           
Sbjct: 1   MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               K  F  QN  E     K    I         D     T Q++  +  +  + + + 
Sbjct: 54  ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPSPIDTIQQQTIEMTQQMLEFQAG 109

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            + S   +     +   G+    +TD   S ++  +                     +L 
Sbjct: 110 DEDSSGGRQKQRGEQRGGQSQQTATDQSSSESQSSDQTQT----------------AELM 153

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KK++  L   + D  V+    E+    + I I   R    F   S+   P+   +L+KIG
Sbjct: 154 KKVAQQLQKQILDGAVE---LESLGQQLTIRI---RENGSFSAGSAFLQPQFQPILRKIG 207

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            +LA     I I GH+D     N + R NW LS  RA +  + +  + G  E R+  + G
Sbjct: 208 VLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRM-SVVG 266

Query: 315 FAHHRLKIASDPM---NSANRRIDI 336
            A     +         + NRR++I
Sbjct: 267 KADTDPMVEDATTPADRARNRRVEI 291


>gi|215485380|ref|YP_002327811.1| hypothetical protein E2348C_0225 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215263452|emb|CAS07773.1| flagellar system protein MbhA [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 261

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++ +     +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIVRDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KSNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|73532502|dbj|BAE19809.1| chemotaxis protein [Edwardsiella tarda]
          Length = 222

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +R  RL+ L +++   +        ++  ++      G+ I IID +N PMF   S+   
Sbjct: 1   RRAVRLKRLLQRLEQVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVE 60

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
           P    +L+ I  +L      IS+ GHTD  P+ N      NW LS DRA ++ + L+  G
Sbjct: 61  PYMRNILRAIAPILNELPNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELIAGG 120

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ ++I ++ G A            + NRRI ILV ++  
Sbjct: 121 LAGNKILRVVGMADTMNLRNLAGNAAVNRRISILVLNKAA 160


>gi|304396266|ref|ZP_07378148.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304356635|gb|EFM21000.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 313

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 7/210 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----RLQ 193
           Q +++ K  L      G+    ST        +    +  ++K   +  +++K    RL 
Sbjct: 57  QIADYFKTPLKIAITGGQRSSDSTSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLN 116

Query: 194 DLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            L +K+   +        ++  ++      G+ I IID +N PMF    +   P    +L
Sbjct: 117 RLREKLDQLIEADPRLKTLRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDIL 176

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  +L      IS+ GHTD   + +      NW LS DRA ++ + L+  G+   +I 
Sbjct: 177 RAIAPILNDIPNRISLAGHTDDFQYASGDKGYSNWELSADRANASRRELVIGGLDSGKIL 236

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++ G A           ++ NRRI +LV +
Sbjct: 237 RVLGMADTMSLKNRGGNDAVNRRISLLVLN 266



 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 3/192 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   ++IKK+       ++ GSWKI YADFMT +MAFF+VMW+++  +      I  Y
Sbjct: 3   HGNRPIVLIKKRKHKGHEGSH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T  +   D  +P      +      + +   +    K      +    R +
Sbjct: 62  FKTPLKIAITGGQRSSDSTSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLNRLREK 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    ++ +      + +    E+G  +       + + K     + P  ++ + A+  
Sbjct: 122 LDQLIEADPRLKTLRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIA- 180

Query: 189 KKRLQDLAKKIS 200
              L D+  +IS
Sbjct: 181 -PILNDIPNRIS 191


>gi|313902670|ref|ZP_07836069.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467108|gb|EFR62623.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 364

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 120/312 (38%), Gaps = 46/312 (14%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YAD +T+L+AFF+VM+ ++  +    +A+            TA + + D +     
Sbjct: 76  WLLTYADLITLLLAFFVVMYAMSEVNAARYQALAASLRA---AFATAGETLIDTEG---- 128

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                        I+ ++  +  G      Q             +      + S      
Sbjct: 129 -------------ISPDARKVLDGLNRDTGQPYPPALPPAGSPEAPGEGSGEPSGEWPGL 175

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G           S  +     +PP+S E       ++R++ L ++++  L       + 
Sbjct: 176 PGL---------PSPGQGAGTAVPPMSAE------ERERMEGLVERVNEALREA---GLG 217

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
                  T  G+ I I D  +   FD   +   PE   +L+++  +LA     I + GHT
Sbjct: 218 GRASARLTERGVAI-IFD--DQVFFDLGRAELRPEGRDLLRRLAPILAQVPGTILVEGHT 274

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMN 328
           D  P R+     NW LS  RA +  + L  ++G+   R++  +G+   R +  +      
Sbjct: 275 DNLPIRSGRYPSNWELSTARATTVVRYLAEQAGLDPRRLAA-AGYGEWRPRYPNTSAANR 333

Query: 329 SANRRIDILVED 340
           + NRR++I++  
Sbjct: 334 ARNRRVEIVLLR 345


>gi|90579839|ref|ZP_01235647.1| flagellar motor protein [Vibrio angustum S14]
 gi|90438724|gb|EAS63907.1| flagellar motor protein [Vibrio angustum S14]
          Length = 307

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81
               W   +AD  T+LM FF+++   +  D    K I           N    N +    
Sbjct: 11  GAPPWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGT 70

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            +  ++  P R     I++ + + I  T+ S+D   G +++    QR    +    + + 
Sbjct: 71  SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRSLDFHEGESDRAGGTQRDAGKLTGGQSKKT 130

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +     +   ++E                                     +  + L + +
Sbjct: 131 ATQNNENDESEAE-------------------------------------QMQEKLKEVL 153

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L   ++D I++    E     ++I I   R    F + S+   P+   +++++  ++
Sbjct: 154 TKALEREISDKIIE---IENLGQQLVIRI---REKGSFPEGSAFLQPKFKPLVRQVAMLV 207

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I + GHT +      + R NW LS  RA S  Q + K  G    ++ ++ G A 
Sbjct: 208 KDVPGIIRVTGHTASDKLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDHTKM-RVVGLAD 266

Query: 318 HRLKIASDPMN--SANRRIDILVEDRQ 342
            +    +      + NRR++I +   +
Sbjct: 267 TQPIADNKTQEGKAKNRRVEISIMQGK 293


>gi|300936146|ref|ZP_07151085.1| OmpA family protein [Escherichia coli MS 21-1]
 gi|300458724|gb|EFK22217.1| OmpA family protein [Escherichia coli MS 21-1]
          Length = 307

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|217976235|ref|YP_002360382.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
 gi|217501611|gb|ACK49020.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
          Length = 402

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 111/273 (40%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            + F      L   +    +    P                +   VD    +        
Sbjct: 125 SKLFRDPYAALAEIAANAIEAAPHPSSGEPQSGPTEFSVESSDVFVDPFTTAPRLADTTV 184

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
               +    +  ++ +   +S  + +E      +         K               A
Sbjct: 185 DGPASHAKPAIPERDKQAPSSPKQRAEPLPHAEEQLSPPAGAGKGTKTGDAATEAAMASA 244

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                    L   +++             +  E T  G+LIS+ D R   MF   S+ PL
Sbjct: 245 QPMDTETASLKAGLTALAPQKGRFGDGPRIEVENTDEGLLISLTDDRKFSMFAIGSAAPL 304

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P+TI  + KIG++L   + ++ +RGHTDA PF++   DNWRLS  RA+ A  +L + G+ 
Sbjct: 305 PQTIEAMAKIGDLLKTRSGMVVVRGHTDARPFKSATYDNWRLSTARAHMAQYMLTRGGLD 364

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           E RI KI GFA HRLK+A++P  +ANRRI+IL+
Sbjct: 365 EKRIEKIEGFADHRLKVAAEPTAAANRRIEILL 397



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           ++  Q I+I K+ + DD   + G+WKI +ADFMT +MA FLV+W+I++T D TK ++ QY
Sbjct: 3   EKEHQEIVIVKRYSRDDEARHGGAWKIAFADFMTAMMALFLVLWLISSTSDKTKHSVAQY 62

Query: 69  FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           FNP    ++ T  KG  D +     +     +  ID    K+  + +  + +   + + +
Sbjct: 63  FNPVKLVDMTTLKKGFRDPKKTEMGAGPKTTESEIDADSNKDLAETQEVAEHPGAKVRLI 122

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
             +  +            +    +         +   +   +  + F+ P +    LA
Sbjct: 123 SESKLFRDPYAALAEIAANAIEAAPHPSSGEPQSGPTEFSVESSDVFVDPFTTAPRLA 180


>gi|326794296|ref|YP_004312116.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545060|gb|ADZ90280.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 334

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 123/321 (38%), Gaps = 41/321 (12%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             +    L ++   +AD M++LM FF+++      D    K +                 
Sbjct: 9   CPECIEGLPAYMGTFADLMSLLMCFFVLLLSFAEMDVLKFKQLAGSMR------------ 56

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                              + + I   S+ +      Q+    R E         +  + 
Sbjct: 57  ---------------EAFGVQKQIEAQSIPMGTSIIAQEFSPGRPEPTPINEVRQKADDR 101

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +N+L       + LCK    E +  +      P    +K  A   +++     ++ +  
Sbjct: 102 PENTL-------EVLCKPDTAELNEQEGAGQPSPSTFVDKSKADLEREKQIQQTEEDAQQ 154

Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +S ++ + I KG V  ET    I I + D+ +   F+  S+    + I V+  + EVL  
Sbjct: 155 ISSVMKEEISKGTVEVETQEQTITIRLKDKGS---FESGSAELNFDFIPVIDMVREVLIG 211

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               IS+ GHTD  P  +     NW+LS  R+ +  + L  +G  +     ++GFA  R 
Sbjct: 212 VKGNISVEGHTDNIPIESRRFQSNWQLSSARSIAVAEELFATGALDQNRFSVTGFADTRP 271

Query: 321 KIASDP--MNSANRRIDILVE 339
            + +D     + NRR++I+++
Sbjct: 272 LVPNDTSANRATNRRVEIVIK 292


>gi|293403376|ref|ZP_06647467.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412]
 gi|298378988|ref|ZP_06988869.1| chemotaxis protein MotB [Escherichia coli FVEC1302]
 gi|291429229|gb|EFF02249.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412]
 gi|298280101|gb|EFI21605.1| chemotaxis protein MotB [Escherichia coli FVEC1302]
          Length = 318

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 102 PPKPATVAVPEETEKKAHDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278

Query: 338 VEDRQG 343
           V  +  
Sbjct: 279 VLTKSA 284



 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++  P        + +  +     + V+ K     +
Sbjct: 72  ERESIIAALHG-QSIFNGGGLSPLNKIRPSHPPKPATVAVPEETEKKAHDVNEKTALLKK 130

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 190

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 191 TLLVELA 197


>gi|163749515|ref|ZP_02156763.1| flagellar motor protein [Shewanella benthica KT99]
 gi|161330924|gb|EDQ01851.1| flagellar motor protein [Shewanella benthica KT99]
          Length = 304

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 120/313 (38%), Gaps = 24/313 (7%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
              +AD M++LM FF+++   +  D    K I               K  F  QN  E  
Sbjct: 1   MATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSM-----------KYAFGVQNKVEVK 49

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
              K    I         +        ++  +  E  + Y +    S        +  E+
Sbjct: 50  DIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPTLEYQAGDDDSSGGVQ--QQRGEQ 107

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
                 +T  E++  K E+       +E       ++ + D  KK++  L+  + D  ++
Sbjct: 108 RGGEASATAQEQAEAKAESVSQARAEEESKAQAAAQENINDQVKKMAQELNKEIVDGAIE 167

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
               E+    I+I I   R    F   S    P    V++++GE+L     ++++ G TD
Sbjct: 168 ---IESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVIRRVGELLRDIPGIVTVSGFTD 221

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNS 329
                N     NW LS  RA +    L+K  G  ++R+ K+ G A+    + +D     +
Sbjct: 222 DMNISNELYSSNWDLSSKRAVAVAHELIKVRGFDQNRM-KVVGMANTNPLVDNDSASNRA 280

Query: 330 ANRRIDILVEDRQ 342
            NRR++I +E  +
Sbjct: 281 RNRRVEIAIEQGK 293


>gi|328545495|ref|YP_004305604.1| flagellar motor protein MotB [polymorphum gilvum SL003B-26A1]
 gi|326415236|gb|ADZ72299.1| Flagellar motor protein MotB [Polymorphum gilvum SL003B-26A1]
          Length = 434

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 9/327 (2%)

Query: 22  AIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
                  +   G ++  Y++       + ++  +  +      +        FG      
Sbjct: 106 KPAGPARHSTGGEYRQFYSEAALFSDPYAVLDTLARSITLPEAEGPAPEKAGFGTREGEG 165

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           ++G  D    P      +   +      +  ++L +     +      E        S+ 
Sbjct: 166 AQG-GDAYRDPFDPLYWQFLPNRGAGAAERPIELAMEPARTEAAEGMPEPRPEASPESRS 224

Query: 140 SEH---CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +E            +          D   +         P        A      L   A
Sbjct: 225 AEGVGKPAPPSPLVASVAPSPSAKPDPNAADAVASGVSAPQAPSAAAPASPEASDLAKTA 284

Query: 197 KKISSTLSGLVADNI---VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             + + L GL    +      +  E T  G+LIS+ D ++  MF   S+ P PE + +++
Sbjct: 285 AALQADLQGLAETPLGAAASRITVERTGAGLLISLTDDQDFGMFAVGSAEPRPELVRLME 344

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +IG  L+     I IRGHTDA PFR+   DNWRLS  RA+ A  +L + GV   R+ +I 
Sbjct: 345 RIGSTLSARPGRIVIRGHTDARPFRSKTYDNWRLSSARAHMALYMLARGGVDAGRVERIE 404

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
           G+A   LK  SDP ++ NRRI+I + +
Sbjct: 405 GYADRDLKRPSDPYSAVNRRIEIFLLE 431



 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 84/216 (38%), Gaps = 3/216 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            + + +I++++ A D   +  G WKI +ADFMT +MAFFLVMW+IN TD++ ++ + QYF
Sbjct: 6   SSGEIVIVRRRPAWDADHHKGGVWKIAFADFMTAMMAFFLVMWLINVTDENVRQGVAQYF 65

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           NP      + ++   ++      +   + D    +  ++N        +   +  Q    
Sbjct: 66  NPVKLAATSPTRKGLNDAGESGDAIGEESDRPPAQGGSENKPAGPARHSTGGEYRQFYSE 125

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS---TDLEKSINKEENYFLPPLSKEKILAM 186
              +       +    S+T    +G    K+   T   +     + Y  P          
Sbjct: 126 AALFSDPYAVLDTLARSITLPEAEGPAPEKAGFGTREGEGAQGGDAYRDPFDPLYWQFLP 185

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            R     +   +++   +   A   +     E +  
Sbjct: 186 NRGAGAAERPIELAMEPARTEAAEGMPEPRPEASPE 221


>gi|218703545|ref|YP_002411064.1| hypothetical protein ECUMN_0293 [Escherichia coli UMN026]
 gi|300899473|ref|ZP_07117721.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|218430642|emb|CAR11508.1| flagellar system protein [Escherichia coli UMN026]
 gi|300356952|gb|EFJ72822.1| OmpA family protein [Escherichia coli MS 198-1]
          Length = 307

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKAHDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++  P        + +  +     + V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKIRPSHPPKPATVAVPEETEKKAHDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|209745374|gb|ACI70994.1| putative motility protein [Escherichia coli]
          Length = 261

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVQIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|331645436|ref|ZP_08346540.1| putative motility protein [Escherichia coli M605]
 gi|331045598|gb|EGI17724.1| putative motility protein [Escherichia coli M605]
          Length = 318

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 102 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278

Query: 338 VEDRQG 343
           V  +  
Sbjct: 279 VLTKSA 284



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 72  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 130

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 190

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 191 TLLVELA 197


>gi|170021342|ref|YP_001726296.1| hypothetical protein EcolC_3350 [Escherichia coli ATCC 8739]
 gi|188495907|ref|ZP_03003177.1| lateral flagellar motor protein B [Escherichia coli 53638]
 gi|169756270|gb|ACA78969.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|188491106|gb|EDU66209.1| lateral flagellar motor protein B [Escherichia coli 53638]
          Length = 307

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS      L+  ++                + E        K  +L  K    L +LA  
Sbjct: 72  QSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATS 131

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I++       +     +  E    G+ + I D +N  MF++ S+  +P    +L ++  V
Sbjct: 132 INTIARDAHMEA---NLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPV 188

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  I I GHTDA  ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A  
Sbjct: 189 FDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQ 248

Query: 319 RLKIASDPMNSANRRIDILVEDRQG 343
            L  A +P ++ NRRI+I+V  +  
Sbjct: 249 MLLDAKNPQSAGNRRIEIMVLTKSA 273



 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 78/188 (41%), Gaps = 3/188 (1%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
            +++I    +  G+++ +       ++ +P        + +  +       V+ K     
Sbjct: 61  ERESIIAALH--GQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLK 118

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           +K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  
Sbjct: 119 KKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFF 178

Query: 180 KEKILAMK 187
           K  ++ + 
Sbjct: 179 KTLLVELA 186


>gi|218528676|ref|YP_002419492.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|218520979|gb|ACK81564.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
          Length = 462

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 4/259 (1%)

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
            D +     S   +      + I + S+   +     K             +   +    
Sbjct: 199 LDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSAE 258

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS----KEKILAMKRKKRLQDLAKKI 199
              L   +E      + T L K+         P        ++         L  L  +I
Sbjct: 259 AAPLAPPAEAKPAPPEPTLLAKAEAPPAKELAPAKELAAPADQAAKAAETAALSALKAEI 318

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  +  L        V    T  G+LISI D+ N  MF   S+ P P+ +  L++I ++L
Sbjct: 319 ARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALERIAKIL 378

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 + +RGHTD  PFR+   DNWRLS  RA  A  +L++ G+ E RI +I G+A  +
Sbjct: 379 NSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIEGYADRQ 438

Query: 320 LKIASDPMNSANRRIDILV 338
            +IA++P  + NRRI+IL+
Sbjct: 439 PRIANNPKAAENRRIEILL 457



 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 9/248 (3%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   DRPHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D Q+ P   + +      D    +   D      ++ ++    +
Sbjct: 63  NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKGDATGAPGSRARESALFQ 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +    L+               ++          +        + F P   +   L  +R
Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180

Query: 189 KKRLQDLAKKISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
                 L    S+     +      A +  +    E+ +     S+ D         +S+
Sbjct: 181 TDNPGALDSAASAPAEARLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASA 240

Query: 243 IPLPETIV 250
            P+P T+ 
Sbjct: 241 EPMPLTVP 248


>gi|293408386|ref|ZP_06652225.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471564|gb|EFF14047.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 307

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDLNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       ++ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDLNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|312964712|ref|ZP_07778963.1| lateral flagellar motor protein B [Escherichia coli 2362-75]
 gi|312290733|gb|EFR18611.1| lateral flagellar motor protein B [Escherichia coli 2362-75]
          Length = 254

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++ +     +     +  
Sbjct: 38  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIVRDAHMEA---NLEM 94

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 95  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 154

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 155 KSNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 214

Query: 338 VEDRQG 343
           V  +  
Sbjct: 215 VLTKSA 220


>gi|325291956|ref|YP_004277820.1| flagellar motor protein MotB [Agrobacterium sp. H13-3]
 gi|27763656|gb|AAO20254.1| MotB [Agrobacterium sp. H13-3]
 gi|325059809|gb|ADY63500.1| flagellar motor protein MotB [Agrobacterium sp. H13-3]
          Length = 428

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
              I Q              G  D       S         D       V +      Q 
Sbjct: 141 LAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPFDPDFWTQQVKITRADQQQN 200

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              Q+          ++ +E      ++    G D  K+ ++   + ++        +  
Sbjct: 201 PVEQQQSAENKQQDPAKDNEAVAAKSSQQPVDGADHGKAMEIAAVVPQQRPGAAEQAALT 260

Query: 182 KILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +            +K+  ++L ++I   +SG ++  + +G++      G+L++I DQ  T
Sbjct: 261 QPQPEQQQQGTAAQKEEAKELREEIEKQISG-ISGKLAEGLVVTPAEGGLLLTISDQTET 319

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           PMF+  S++P  E ++ ++KIG++L      + IRGHTD   F+  A DNWRLS+DRA+S
Sbjct: 320 PMFNVGSAVPRGEMVLAMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHS 379

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           AY +L++ G+SE+R+ ++SGFA  RL++ +DP+ +ANRRI+IL+E  +G
Sbjct: 380 AYYMLVRGGLSEERVKQVSGFADRRLQVPADPLANANRRIEILLEADRG 428



 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 8/189 (4%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S G+ +      III K+        + G+WKI YADFMT +MAFFLVMW++NA +++TK
Sbjct: 2   SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61

Query: 63  KAIEQYFNPFG----KNLMTASKGIFDEQNPPERSSQNKIDLS----IDEHITKNSVDLK 114
            ++  YFNP      K      +   D++   E+  Q+ I            T   +  +
Sbjct: 62  ASVASYFNPIKLSDEKPSSKGLEKPVDKEEGVEKKDQSNIKAEKVTQGSAAATGEDLTSQ 121

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
            G  +   +    EN    L+   Q    + +++   E G                 + F
Sbjct: 122 TGEQSNFSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPF 181

Query: 175 LPPLSKEKI 183
            P    +++
Sbjct: 182 DPDFWTQQV 190


>gi|331671822|ref|ZP_08372618.1| putative motility protein [Escherichia coli TA280]
 gi|331070811|gb|EGI42170.1| putative motility protein [Escherichia coli TA280]
          Length = 318

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 102 PSKPATVAVPEETEKKARDLNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278

Query: 338 VEDRQG 343
           V  +  
Sbjct: 279 VLTKSA 284



 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 75/187 (40%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12  MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P   S    + +  +       ++ K     +
Sbjct: 72  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPSKPATVAVPEETEKKARDLNEKTALLKK 130

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 190

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 191 TLLVELA 197


>gi|300817251|ref|ZP_07097469.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|307313501|ref|ZP_07593122.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|300530227|gb|EFK51289.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|306906669|gb|EFN37180.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|323181565|gb|EFZ66985.1| lateral flagellar motor protein B [Escherichia coli 1357]
 gi|323379881|gb|ADX52149.1| OmpA/MotB domain protein [Escherichia coli KO11]
          Length = 307

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 88  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|91209318|ref|YP_539304.1| hypothetical protein UTI89_C0270 [Escherichia coli UTI89]
 gi|91070892|gb|ABE05773.1| putative motility protein MbhA [Escherichia coli UTI89]
          Length = 262

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                     + E        K  +L  K    L +LA  I++       +     +  E
Sbjct: 47  PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 103

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + I D +N  MF++ S+  +P    +L ++  VL      I I GHTDA  ++
Sbjct: 104 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 163

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 164 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223

Query: 339 EDRQG 343
             +  
Sbjct: 224 LTKSA 228


>gi|323963541|gb|EGB59099.1| OmpA family protein [Escherichia coli H489]
 gi|323972411|gb|EGB67618.1| OmpA family protein [Escherichia coli TA007]
          Length = 261

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 42  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   DNW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|309786020|ref|ZP_07680649.1| lateral flagellar motor protein B [Shigella dysenteriae 1617]
 gi|308926131|gb|EFP71609.1| lateral flagellar motor protein B [Shigella dysenteriae 1617]
          Length = 307

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKSRDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKSRDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|239781764|pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From
           Salmonella (Crystal Form I)
          Length = 210

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 5   TQQQGEVEKQPNIDELKKRXEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 64

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284
            IID +N P F   S+   P    +L+ I  VL      IS+ GHTD  P+ N      N
Sbjct: 65  QIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 124

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           W LS DRA ++ + L+  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 125 WELSADRANASRRELVAGGLDNGKVLRVVGXAATXRLSDRGPDDAINRRISLLVLNKQA 183


>gi|117622532|ref|YP_851445.1| hypothetical protein APECO1_1739 [Escherichia coli APEC O1]
 gi|237707752|ref|ZP_04538233.1| MbhA protein [Escherichia sp. 3_2_53FAA]
 gi|115511656|gb|ABI99730.1| putative motility protein MbhA [Escherichia coli APEC O1]
 gi|226898962|gb|EEH85221.1| MbhA protein [Escherichia sp. 3_2_53FAA]
 gi|323958690|gb|EGB54391.1| OmpA family protein [Escherichia coli H263]
          Length = 261

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                     + E        K  +L  K    L +LA  I++       +     +  E
Sbjct: 46  PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 102

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + I D +N  MF++ S+  +P    +L ++  VL      I I GHTDA  ++
Sbjct: 103 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 162

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 163 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222

Query: 339 EDRQG 343
             +  
Sbjct: 223 LTKSA 227


>gi|331640759|ref|ZP_08341894.1| putative motility protein [Escherichia coli H736]
 gi|331037557|gb|EGI09777.1| putative motility protein [Escherichia coli H736]
          Length = 318

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 102 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 278

Query: 338 VEDRQG 343
           V  +  
Sbjct: 279 VLTKSA 284



 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 73/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 12  MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 72  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 130

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 190

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 191 TLLVELA 197


>gi|323171084|gb|EFZ56733.1| lateral flagellar motor protein B [Escherichia coli LT-68]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|170681840|ref|YP_001742391.1| hypothetical protein EcSMS35_0284 [Escherichia coli SMS-3-5]
 gi|170519558|gb|ACB17736.1| lateral flagellar motor protein B [Escherichia coli SMS-3-5]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 75/187 (40%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P   S    + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPSKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|309700460|emb|CBI99754.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli
           ETEC H10407]
          Length = 296

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 77  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 136

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 196

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   DNW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 197 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 256

Query: 338 VEDRQG 343
           V  +  
Sbjct: 257 VLTKSA 262


>gi|323976251|gb|EGB71344.1| OmpA family protein [Escherichia coli TW10509]
 gi|327254574|gb|EGE66190.1| lateral flagellar motor protein B [Escherichia coli STEC_7v]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 101 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 157

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +++   +NW L
Sbjct: 158 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNL 217

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL  +G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 218 SGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273



 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPTHPLKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|301643541|ref|ZP_07243583.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|307136895|ref|ZP_07496251.1| hypothetical protein EcolH7_02026 [Escherichia coli H736]
 gi|301078041|gb|EFK92847.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|315616807|gb|EFU97424.1| lateral flagellar motor protein B [Escherichia coli 3431]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 73/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++     +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|328542461|ref|YP_004302570.1| OmpA family protein [polymorphum gilvum SL003B-26A1]
 gi|326412208|gb|ADZ69271.1| OmpA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 283

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 113/321 (35%), Gaps = 51/321 (15%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                  +    W + +AD M++L+ FF+++   +  D +  + +               
Sbjct: 2   AKKKQQSSGAPEWLVTFADLMSLLVCFFVLIISFSIQDREKMQVVAGSMR---------- 51

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
                             D    +  ++ +  ++I     +   + +      L +   +
Sbjct: 52  ------------------DAFGVKESSRRTGIIEIEGIPIRDYMKHVTQVPQELDSDFAA 93

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           E  +    +  E         D+EKS                  A   ++  Q++ +   
Sbjct: 94  ERHEKKSKQGPEANTHDTVEADIEKSRQF------------ATAAASLRQAFQEMPE--- 138

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                     I   ++ E T  G+ I I+DQ    MF + S  P   T  +L K+  VLA
Sbjct: 139 -------ITEISSNIIMEETEEGLNILIVDQDGRSMFREGSKYPYETTRRLLAKMAPVLA 191

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHT       + +   W LS DRA  A  +L + G+  D+I  + G A   
Sbjct: 192 EMPNRIQITGHTTTGGTTADPSYTGWELSSDRANIARMILTEYGIPADQIHSVVGKADSE 251

Query: 320 LKIASDPMNSANRRIDILVED 340
               +DP  +ANRRI IL+  
Sbjct: 252 PLFPNDPFLAANRRIGILLMS 272


>gi|163735541|ref|ZP_02142973.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149]
 gi|161391161|gb|EDQ15498.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149]
          Length = 279

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 59/333 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   +IIKKK  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +  +  Y
Sbjct: 4   QSNLAPVIIKKKKKVVGGGHHGGAWKVAYADFVTAMMAFFMMMWLLNATTEQQRAGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F P                 P  R S         + I       + G            
Sbjct: 64  FAP---------------TIPINRISGGGDGAFGGDSIFSEETLPQNGL----------- 97

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                          +++  + +  G+    S   E+  + EE                 
Sbjct: 98  -----------GATSQHATRKKAASGESGNDSDGGEQDSSDEE----------------- 129

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              LQ L +++        V +N ++ ++   T  G++I +      P+F  +S  P P 
Sbjct: 130 ---LQALIEELMGRGGESTVMENALEHIVTRITDEGLVIELFALDGQPLFQPNSDDPTPL 186

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              +++ +  V   +T  I+I  H  + P        W +S DRA     +L ++G+  +
Sbjct: 187 MTQLVELVASVAFAATNNIAIGAHVPSRPIVVAQNPVWDVSTDRATRTRLMLQENGLEPE 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G A     +  +PM + N R++I++  
Sbjct: 247 RMHRVTGHADREP-VHLNPMATRNSRVEIVLLR 278


>gi|260853484|ref|YP_003227375.1| putative lateral flagellar motor protein [Escherichia coli O26:H11
           str. 11368]
 gi|260866430|ref|YP_003232832.1| putative lateral flagellar motor protein [Escherichia coli O111:H-
           str. 11128]
 gi|257752133|dbj|BAI23635.1| predicted lateral flagellar motor protein [Escherichia coli O26:H11
           str. 11368]
 gi|257762786|dbj|BAI34281.1| predicted lateral flagellar motor protein [Escherichia coli O111:H-
           str. 11128]
 gi|323158085|gb|EFZ44184.1| lateral flagellar motor protein B [Escherichia coli EPECa14]
 gi|323178474|gb|EFZ64052.1| lateral flagellar motor protein B [Escherichia coli 1180]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 TLLVELA 186


>gi|82775833|ref|YP_402180.1| hypothetical protein SDY_0484 [Shigella dysenteriae Sd197]
 gi|81239981|gb|ABB60691.1| putative motility protein [Shigella dysenteriae Sd197]
          Length = 259

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 43  PPKPATVAVPEETEKKSRDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 99

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 100 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 159

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 160 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 219

Query: 338 VEDRQG 343
           V  +  
Sbjct: 220 VLTKSA 225


>gi|256020246|ref|ZP_05434111.1| hypothetical protein ShiD9_15115 [Shigella sp. D9]
 gi|332281408|ref|ZP_08393821.1| flagellar motor region [Shigella sp. D9]
 gi|332103760|gb|EGJ07106.1| flagellar motor region [Shigella sp. D9]
          Length = 307

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 88  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P   ++L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKMLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 MLLVELA 186


>gi|260842477|ref|YP_003220255.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009]
 gi|257757624|dbj|BAI29121.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009]
          Length = 261

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 42  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|83648502|ref|YP_436937.1| flagellar motor protein MotB [Hahella chejuensis KCTC 2396]
 gi|83636545|gb|ABC32512.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 326

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 117/318 (36%), Gaps = 43/318 (13%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           + P  L +W   +AD M++LM FF+++   +  D    K +              + G+ 
Sbjct: 10  ECPPGLPAWMATFADLMSLLMCFFVLLLSFSEMDALKFKRLAGSMR--------EAFGVQ 61

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
              N         I          +   L+                       QQ+E   
Sbjct: 62  AIVNVDSIPKGTSIIAQEFSPGKPDPTPLQTIM--------------------QQTEMDL 101

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            +L +  E+        +  K   +E +  +  L K K+L  + +     LA  + S + 
Sbjct: 102 PNLEQLCEQQVADALQEECPKVQGEELSDIV--LEKIKMLVEETENDAITLASALESEVR 159

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
                     V  ET    I+I +   +    F   S+   PE   V+ K+ E+L     
Sbjct: 160 N-------NQVEVETRGRKIVIRV---QEKGSFSSGSADLNPEFYPVIDKLVELLKSMEG 209

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
            IS+ GH+D+ P R    R NW LS  RA      L +SG  E     I+G+A  +    
Sbjct: 210 SISVEGHSDSIPIRTARFRSNWDLSAARALEVAHALFESGELEPSRFSIAGYADTKPLAP 269

Query: 324 SD--PMNSANRRIDILVE 339
           +D     + NRR++I+++
Sbjct: 270 NDSAENRARNRRVEIILQ 287


>gi|115524590|ref|YP_781501.1| OmpA/MotB [Rhodopseudomonas palustris BisA53]
 gi|115518537|gb|ABJ06521.1| OmpA/MotB [Rhodopseudomonas palustris BisA53]
          Length = 280

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 64/314 (20%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQN 88
              W + +AD M +L++FF+++   +  D    + +     + FG         I +   
Sbjct: 17  GHGWFVTFADLMALLVSFFVMLVSFSHQDQVKLQIVAGSMRDAFGVQKDARYSAIVETDG 76

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P R +   +D    E  T      + G   +     + E                    
Sbjct: 77  VPVRGNVKNVDRVAAEQSTPFPSPDEGGGMAKTGAQIQAEREF----------------- 119

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                                             + +   ++ LQD+ +           
Sbjct: 120 ---------------------------------ALASASLRQALQDMPE----------I 136

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
             + K V+FE T+ G+ + I+DQ   PMF + S +P   T ++++++   L  ++  I++
Sbjct: 137 AEVSKNVMFEETKEGLNLQIVDQDGRPMFPEGSPVPFQRTKLLIERLAAPLRATSLRITL 196

Query: 269 RGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            GHT ++  P R+ A D + LS  RA +  Q+L + G+    +  ++G A        DP
Sbjct: 197 VGHTSSAVLPGRSDA-DGFDLSWQRANAVRQILKREGLPIANVLSVTGKADSEPLFPDDP 255

Query: 327 MNSANRRIDILVED 340
           M +ANRR+ I +  
Sbjct: 256 MLAANRRVTITLLR 269


>gi|281177445|dbj|BAI53775.1| putative motility protein [Escherichia coli SE15]
          Length = 262

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 46  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 102

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 162

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 222

Query: 338 VEDRQG 343
           V  +  
Sbjct: 223 VLTKSA 228


>gi|213416605|ref|ZP_03349749.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 170

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ GHTD 
Sbjct: 1   MKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDD 60

Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            P+ N      NW LS DRA ++ + L+  G+   ++ ++ G A         P ++ NR
Sbjct: 61  FPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINR 120

Query: 333 RIDILVEDRQG 343
           RI +LV ++Q 
Sbjct: 121 RISLLVLNKQA 131


>gi|320643247|gb|EFX12446.1| hypothetical protein ECO9389_21954 [Escherichia coli O157:H- str.
           493-89]
 gi|320648894|gb|EFX17512.1| hypothetical protein ECO2687_10031 [Escherichia coli O157:H- str. H
           2687]
          Length = 256

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++        ++   +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVQIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|15799935|ref|NP_285947.1| hypothetical protein Z0291 [Escherichia coli O157:H7 EDL933]
 gi|15829511|ref|NP_308284.1| hypothetical protein ECs0256 [Escherichia coli O157:H7 str. Sakai]
 gi|291281074|ref|YP_003497892.1| putative motility protein [Escherichia coli O55:H7 str. CB9615]
 gi|293413506|ref|ZP_06656155.1| hypothetical protein ECDG_00047 [Escherichia coli B185]
 gi|331651164|ref|ZP_08352189.1| putative motility protein [Escherichia coli M718]
 gi|12513001|gb|AAG54555.1|AE005201_8 putative motility protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359714|dbj|BAB33680.1| putative motility protein [Escherichia coli O157:H7 str. Sakai]
 gi|209745376|gb|ACI70995.1| putative motility protein [Escherichia coli]
 gi|209745378|gb|ACI70996.1| putative motility protein [Escherichia coli]
 gi|209745380|gb|ACI70997.1| putative motility protein [Escherichia coli]
 gi|209745382|gb|ACI70998.1| putative motility protein [Escherichia coli]
 gi|290760946|gb|ADD54907.1| Putative motility protein [Escherichia coli O55:H7 str. CB9615]
 gi|291433564|gb|EFF06537.1| hypothetical protein ECDG_00047 [Escherichia coli B185]
 gi|323938776|gb|EGB35022.1| OmpA family protein [Escherichia coli E1520]
 gi|331050905|gb|EGI22957.1| putative motility protein [Escherichia coli M718]
          Length = 261

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|331661626|ref|ZP_08362549.1| putative motility protein [Escherichia coli TA143]
 gi|331060048|gb|EGI32012.1| putative motility protein [Escherichia coli TA143]
          Length = 261

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|331666564|ref|ZP_08367438.1| putative motility protein [Escherichia coli TA271]
 gi|331065788|gb|EGI37672.1| putative motility protein [Escherichia coli TA271]
          Length = 307

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 91  PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 147

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 207

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267

Query: 338 VEDRQG 343
           V  +  
Sbjct: 268 VLTKSA 273



 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M   G++ +   +  I+++++  +   ++ G+WK+ +ADF   +MA F+ +WI+N+    
Sbjct: 1   MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
            +++I    +              ++ +P        + +  +       V+ K     +
Sbjct: 61  ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTVLLKK 119

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K   +  E      + ++ +    N       +G  +    D  +++ +  +  + P  K
Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179

Query: 181 EKILAMK 187
             ++ + 
Sbjct: 180 RLLVELA 186


>gi|74310872|ref|YP_309292.1| hypothetical protein SSON_0272 [Shigella sonnei Ss046]
 gi|293418347|ref|ZP_06660782.1| chemotaxis protein MotB [Escherichia coli B088]
 gi|73854349|gb|AAZ87056.1| putative motility protein [Shigella sonnei Ss046]
 gi|291324875|gb|EFE64290.1| chemotaxis protein MotB [Escherichia coli B088]
          Length = 261

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 42  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|194438259|ref|ZP_03070351.1| putative chemotaxis protein [Escherichia coli 101-1]
 gi|297521341|ref|ZP_06939727.1| hypothetical protein EcolOP_27134 [Escherichia coli OP50]
 gi|194422923|gb|EDX38918.1| putative chemotaxis protein [Escherichia coli 101-1]
          Length = 256

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 37  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   DNW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|218557186|ref|YP_002390099.1| hypothetical protein ECS88_0265 [Escherichia coli S88]
 gi|218363955|emb|CAR01620.1| flagellar system protein [Escherichia coli S88]
          Length = 296

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                     + E        K  +L  K    L +LA  I++       +     +  E
Sbjct: 81  PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 137

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + I D +N  MF++ S+  +P    +L ++  VL      I I GHTDA  ++
Sbjct: 138 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 197

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 198 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257

Query: 339 EDRQG 343
             +  
Sbjct: 258 LTKSA 262


>gi|308187234|ref|YP_003931365.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1]
 gi|308057744|gb|ADO09916.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1]
          Length = 313

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 191 RLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           RL  L +K+   +        ++  ++      G+ I IID +N PMF    +   P   
Sbjct: 114 RLNRLREKLDQMIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMR 173

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +L+ I  +L      IS+ GHTD   +        NW LS DRA ++ + L+  G+   
Sbjct: 174 DILRAIAPILNDIPNRISLAGHTDDFQYAGGDKGYSNWELSTDRANASRRELVMGGLDSG 233

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++ ++ G A           ++ NRRI +LV +
Sbjct: 234 KVLRVLGMADTMRLKNRGGNDAVNRRISLLVLN 266



 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 3/192 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
             N   ++IKK+       ++ GSWKI YADFMT +MAFF+VMW+++  +      I  Y
Sbjct: 3   HGNRPIVLIKKRKHKGHEGSH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T      D  +P      +      + +   +    K      +    R +
Sbjct: 62  FKTPLKVAITGGARSSDSDSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLNRLREK 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    ++ +      + +    E+G  +       + + K     + P  ++ + A+  
Sbjct: 122 LDQMIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIA- 180

Query: 189 KKRLQDLAKKIS 200
              L D+  +IS
Sbjct: 181 -PILNDIPNRIS 191


>gi|188533603|ref|YP_001907400.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99]
 gi|188028645|emb|CAO96507.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99]
          Length = 343

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 7/210 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----RLQ 193
           Q +++ K  L      G+    S+       ++    +  + K   + ++++K    RL 
Sbjct: 57  QIADYFKTPLKVAITGGQRSSDSSSPIPGGGQDPTEKIGEVRKGFDMNVQKRKLDEVRLN 116

Query: 194 DLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            L + +   +        ++  ++      G+ I IID +N PMF   S+        +L
Sbjct: 117 RLRENLDQLIEADPKLRALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDIL 176

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + I  +L      IS+ GHTD  P+        NW LS DRA ++ + L+  G+S  ++ 
Sbjct: 177 RAIAPILNQIPNRISMAGHTDDFPYAGGERGYSNWELSADRANASRRELVAGGLSSGKML 236

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++ G +           ++ NRRI +LV +
Sbjct: 237 RVVGMSDTMKLKNRGANDAVNRRISLLVLN 266



 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 2/194 (1%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           + ND+ I++ K+   +    + GSWKI YADFMT +MAFFLVMW+I+ +       I  Y
Sbjct: 2   KHNDRPIVLVKRKKANKHSGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F    K  +T  +   D  +P     Q+  +   +     +    K      +    R  
Sbjct: 62  FKTPLKVAITGGQRSSDSSSPIPGGGQDPTEKIGEVRKGFDMNVQKRKLDEVRLNRLREN 121

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            +    ++ +      + +    E+G  +       + + K  +  +    ++ + A+  
Sbjct: 122 LDQLIEADPKLRALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIA- 180

Query: 189 KKRLQDLAKKISST 202
              L  +  +IS  
Sbjct: 181 -PILNQIPNRISMA 193


>gi|294491414|gb|ADE90170.1| putative chemotaxis protein [Escherichia coli IHE3034]
 gi|307628268|gb|ADN72572.1| hypothetical protein UM146_16065 [Escherichia coli UM146]
 gi|323953128|gb|EGB48996.1| OmpA family protein [Escherichia coli H252]
          Length = 256

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                     + E        K  +L  K    L +LA  I++       +     +  E
Sbjct: 41  PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 97

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + I D +N  MF++ S+  +P    +L ++  VL      I I GHTDA  ++
Sbjct: 98  IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 157

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 158 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217

Query: 339 EDRQG 343
             +  
Sbjct: 218 LTKSA 222


>gi|26246276|ref|NP_752315.1| hypothetical protein c0378 [Escherichia coli CFT073]
 gi|26106674|gb|AAN78859.1|AE016756_42 MbhA protein [Escherichia coli CFT073]
          Length = 262

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 46  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 102

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 162

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 222

Query: 338 VEDRQG 343
           V  +  
Sbjct: 223 VLTKSA 228


>gi|89073143|ref|ZP_01159682.1| flagellar motor protein [Photobacterium sp. SKA34]
 gi|89051096|gb|EAR56553.1| flagellar motor protein [Photobacterium sp. SKA34]
          Length = 307

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81
               W   +AD  T+LM FF+++   +  D    K I           N    N +    
Sbjct: 11  GAPPWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGT 70

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            +  ++  P R     I++ + + I  T+ S+D   G +++    QR    +       Q
Sbjct: 71  SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRSLDFHEGESDRAGGTQRDAGKLTGG----Q 126

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S+        + E   D                                 +  + L + +
Sbjct: 127 SKKTATQNNENDESEAD---------------------------------QMQEKLKEVL 153

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L   ++D I++    E     ++I I   R    F + S+   P+   +++++  ++
Sbjct: 154 TKALEREISDKIIE---IENLGQQLVIRI---REKGSFPEGSAFLQPKFKPLVRQVAMLV 207

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317
                +I + GHT +      + R NW LS  RA S  Q + K  G    ++ ++ G A 
Sbjct: 208 KDVPGIIRVTGHTASDKLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDHTKM-RVIGLAD 266

Query: 318 HRLKIASDPMN--SANRRIDILVEDRQ 342
            +    +   +  + NRR++I +   +
Sbjct: 267 TQPIADNKTQDGKAKNRRVEISIIQGK 293


>gi|331656310|ref|ZP_08357272.1| MbhA protein [Escherichia coli TA206]
 gi|331054558|gb|EGI26567.1| MbhA protein [Escherichia coli TA206]
          Length = 261

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|324115583|gb|EGC09522.1| OmpA family protein [Escherichia coli E1167]
          Length = 261

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|260450574|gb|ACX40996.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|323943350|gb|EGB39503.1| OmpA family protein [Escherichia coli E482]
          Length = 261

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|193063256|ref|ZP_03044347.1| putative chemotaxis protein [Escherichia coli E22]
 gi|192931164|gb|EDV83767.1| putative chemotaxis protein [Escherichia coli E22]
 gi|323160305|gb|EFZ46258.1| lateral flagellar motor protein B [Escherichia coli E128010]
          Length = 256

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 37  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|50120622|ref|YP_049789.1| flagellar motor protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611148|emb|CAG74594.1| chemotaxis protein [Pectobacterium atrosepticum SCRI1043]
          Length = 351

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +LT  S+                +++      +  + +     + RL  L +++   +
Sbjct: 65  KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVRKAIKTDNVEKKLDEVRLNRLRERLDQLI 124

Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                   ++  +L E    G+ I IID +N PMF   S+   P    +L+ I  ++   
Sbjct: 125 EADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPIMNDF 184

Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319
              +SI GHTD   +        NW LS DRA ++ + L+  G+S+ ++ ++ G A    
Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIWGGLSDGKVLRVVGMAATMS 244

Query: 320 LKIASDPMNSANRRIDILVEDRQG 343
           LK A+   ++ NRRI +LV  RQ 
Sbjct: 245 LKQAASGNDAINRRISLLVLSRQA 268



 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+     D  +P      +      +      + +++      +    R   +
Sbjct: 62  TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVRKAIKTDNVEKKLDEVRLNRLRERLD 121

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               ++ +      + L    E+G  +       + + K  +  + P  ++ + A+ 
Sbjct: 122 QLIEADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178


>gi|241203119|ref|YP_002974215.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857009|gb|ACS54676.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 443

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 12/279 (4%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           E Y +PF  +  T    +     P P   S ++   S    I K      I  T  +K  
Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKPLPPGKSDDQAVESETTEIAKLEDAKPIPLTTDQKAA 235

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           Q  +         +  +          +K  +  K  D +K  +K          KE   
Sbjct: 236 QETKETKETKGAVEAKDGKTPGGKSPEDKKAEAQKDADHQKDADKSAAETEQQQQKEAEQ 295

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
              +            +   G VA  + +G+    +  G+L+SI DQ +  MF+  S++P
Sbjct: 296 LQAQI-----------AQQIGGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVP 344

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             E ++ ++KIG +L      +++RGHTD   ++    +NWRLS+DRA SAY +L++ G+
Sbjct: 345 RQEMVLAMEKIGAILKERGGAVAVRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGL 404

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            E RIS++SGFA  RLK+ SDP N+ NRRI+ILV+  QG
Sbjct: 405 DEKRISQVSGFADRRLKLPSDPFNATNRRIEILVQADQG 443



 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1   MSEGENHHHGKNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61  TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           TK ++  YFNP      K      K   D  E    +  S+ K +   D     +  D  
Sbjct: 61  TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEEDPNDGKAAADGDDQT 120

Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             S +Q    +    EN    L+   Q    + +++   + G                 +
Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180

Query: 173 YFLPPLSKEKILAMKRKKRL 192
            F P    +++      K L
Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200


>gi|260466608|ref|ZP_05812796.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029614|gb|EEW30902.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 466

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 2/267 (0%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P  +      +   D   P +++++ ++             D  +    +       + +
Sbjct: 197 PGAEASAQRPRIEGDPVKPGDKAAETQVAKVKAVPPAPPLKDAPLEPLAKDAAATMAKAS 256

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                +++ S+   ++         +  K+     S    +     P + EK       K
Sbjct: 257 DIKAGDTKASDTKASNAKAGEGNAAEAAKADATLASREAAKPEAAKPEAAEKAPTAAALK 316

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
              D+ ++++        D +  GV  E T  G++ISI D+ +  MF+  S++P  E ++
Sbjct: 317 AAADVKRQLADAFKP--GDKLHDGVSVEATDKGVVISITDRLDFGMFEVGSALPSRELVL 374

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            ++KIG ++      ISI GHTDA PFR+ + DNWRLS  RA+SAY +L++ GV E RI+
Sbjct: 375 AMEKIGRIVNSQKGTISINGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRIT 434

Query: 311 KISGFAHHRLKIASDPMNSANRRIDIL 337
           +++GFA  + K  +DPM + NRRI+IL
Sbjct: 435 EVAGFADRQPKDPADPMAAVNRRIEIL 461



 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 12/203 (5%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S  + +    + II++      D  ++ G WKI +ADFMT +M FFLVMW+INA ++ TK
Sbjct: 2   SVAEADHGRHEIIIVRHAHGDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTK 61

Query: 63  KAIEQYFNPFG-KNLMTASKGIFD-----------EQNPPERSSQNKIDLSIDEHITKNS 110
            A+  YFNP    +  ++ KG+ D            ++P + + ++  D +     ++  
Sbjct: 62  AAVASYFNPVKLVDRNSSRKGLEDLGDGPNAIGATAESPQQATGKSGQDGTGGAGTSERK 121

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
            D +    +++       +    LS          ++++  + G                
Sbjct: 122 QDKQEQQQSERSDEHLFADPYAVLSEIATDTGVMQNVSQKGDGGAQSAGPATGASGGASY 181

Query: 171 ENYFLPPLSKEKILAMKRKKRLQ 193
            + F P    +++ A   +   Q
Sbjct: 182 RDPFEPDFWSQQVAAPGAEASAQ 204


>gi|209917443|ref|YP_002291527.1| hypothetical protein ECSE_0251 [Escherichia coli SE11]
 gi|209910702|dbj|BAG75776.1| putative motility protein [Escherichia coli SE11]
          Length = 262

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 46  PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 102

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 162

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 222

Query: 338 VEDRQG 343
           V  +  
Sbjct: 223 VLTKSA 228


>gi|238796916|ref|ZP_04640420.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969]
 gi|238719176|gb|EEQ10988.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969]
          Length = 320

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 8/219 (3%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +   L   Q +++ K  L      G     S         +       + K+ +  M ++
Sbjct: 16  SSTPLQREQIADYFKMPLKLAMSHGDKSSVSDSPIPGGGDDLMKQDGEVLKQTLAKMDKQ 75

Query: 190 KRLQDLAKKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           K  Q+L ++    L  L+  +         +    T  G+LI IID +  PMF   S   
Sbjct: 76  KNAQNL-RRAHEKLENLIKKDPRLSDFQSNLRLSLTDDGLLIQIIDSQERPMFKVGSREL 134

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302
            P   ++LQ +  VL      I++ GHTD+ P+ N      NW LS DRA ++ + L+  
Sbjct: 135 EPYMRIILQALVPVLNDLPNKINLTGHTDSLPYVNGEAGYSNWELSSDRANASRRTLVSG 194

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           G+++++  ++ G A              NRRI ILV  +
Sbjct: 195 GLADNKFLRVIGSADMMNLANVKSDAPINRRISILVLSK 233



 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS--KGIFDEQNPPERSSQNKI 98
           MT +MAFFLVMW+++++    ++ I  YF    K  M+      + D   P       K 
Sbjct: 1   MTAMMAFFLVMWLLSSSTPLQREQIADYFKMPLKLAMSHGDKSSVSDSPIPGGGDDLMKQ 60

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D  + +  T   +D +  + N ++ +++LEN I    + + S+   N     ++ G  + 
Sbjct: 61  DGEVLKQ-TLAKMDKQKNAQNLRRAHEKLENLI--KKDPRLSDFQSNLRLSLTDDGLLIQ 117

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                E+ + K  +  L P    +I+       L DL  KI+
Sbjct: 118 IIDSQERPMFKVGSRELEPY--MRIILQALVPVLNDLPNKIN 157


>gi|254787123|ref|YP_003074552.1| flagellar motor protein MotB [Teredinibacter turnerae T7901]
 gi|237687385|gb|ACR14649.1| putative chemotaxis protein MotB [Teredinibacter turnerae T7901]
          Length = 329

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 47/322 (14%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           + P  L +W   +AD M++LM FF+++   +  D    K +           M  + G+ 
Sbjct: 10  ECPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGS--------MAQAFGVQ 61

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           ++ N  +      I              L +   N +   +                   
Sbjct: 62  NKLNVTDIPKGTSIIAQEFSPARPEPTPLNVIYQNTQDITEMSLEQDCAQEYD------- 114

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                  E+G++        +   K E+           LA    ++++    ++ +   
Sbjct: 115 ------IEQGEEGVDGGIKVRVKQKLEDLLQKTEQDAYELAEALNEQIEAGQVEVETRGR 168

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            ++     KG                      F   S+   PE   V+ ++  VL     
Sbjct: 169 LIIIRIREKGS---------------------FVSGSAELAPEYRDVMGEVRSVLTLKPG 207

Query: 265 VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
            I ++GH+D  P R    R NW LS  RA S  Q LM  G       ++SGFA  R  +A
Sbjct: 208 RIEVQGHSDNIPVRRGRYRSNWELSAARAVSVAQELMSGGALPPNRFEVSGFADTRPLVA 267

Query: 324 SDP--MNSANRRIDILVEDRQG 343
           +      + NRR++IL+  +QG
Sbjct: 268 NTTPENRARNRRVEILI--KQG 287


>gi|332341583|gb|AEE54917.1| lateral flagellar motor protein B LafU [Escherichia coli UMNK88]
          Length = 256

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS      L+  ++                + E        K  +L  K    L +LA  
Sbjct: 21  QSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATS 80

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I++       +     +  E    G+ + I D +N  MF++ S+  +P    +L ++  V
Sbjct: 81  INTIARDAHMEA---NLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPV 137

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  I I GHTDA  ++N   +NW LS DRA SA +VL ++G+ ED++ ++S  A  
Sbjct: 138 FDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQ 197

Query: 319 RLKIASDPMNSANRRIDILVEDRQG 343
            L  A +P ++ NRRI+I+V  +  
Sbjct: 198 MLLDAKNPQSAGNRRIEIMVLTKSA 222


>gi|331675914|ref|ZP_08376631.1| putative motility protein [Escherichia coli H591]
 gi|331076474|gb|EGI47751.1| putative motility protein [Escherichia coli H591]
          Length = 261

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|157157459|ref|YP_001461420.1| hypothetical protein EcE24377A_0264 [Escherichia coli E24377A]
 gi|157159714|ref|YP_001457032.1| hypothetical protein EcHS_A0258 [Escherichia coli HS]
 gi|191165724|ref|ZP_03027563.1| putative chemotaxis protein [Escherichia coli B7A]
 gi|157065394|gb|ABV04649.1| putative chemotaxis protein [Escherichia coli HS]
 gi|157079489|gb|ABV19197.1| putative chemotaxis protein [Escherichia coli E24377A]
 gi|190904231|gb|EDV63941.1| putative chemotaxis protein [Escherichia coli B7A]
 gi|320176694|gb|EFW51731.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC
           74-1112]
 gi|323169560|gb|EFZ55232.1| lateral flagellar motor protein B [Shigella sonnei 53G]
          Length = 256

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 37  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|168750213|ref|ZP_02775235.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113]
 gi|168763471|ref|ZP_02788478.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501]
 gi|168770028|ref|ZP_02795035.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486]
 gi|168782991|ref|ZP_02807998.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076]
 gi|168789703|ref|ZP_02814710.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869]
 gi|168800332|ref|ZP_02825339.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508]
 gi|187776213|ref|ZP_02801137.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196]
 gi|189402400|ref|ZP_02782265.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401]
 gi|194432761|ref|ZP_03065046.1| putative chemotaxis protein [Shigella dysenteriae 1012]
 gi|195938633|ref|ZP_03084015.1| hypothetical protein EscherichcoliO157_19762 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807047|ref|ZP_03249384.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811824|ref|ZP_03253153.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818543|ref|ZP_03258863.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397836|ref|YP_002268857.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115]
 gi|217325834|ref|ZP_03441918.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588]
 gi|254791390|ref|YP_003076227.1| hypothetical protein ECSP_0264 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223715|ref|ZP_05937996.1| hypothetical protein EscherichiacoliO157_03796 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255876|ref|ZP_05948409.1| hypothetical protein EscherichiacoliO157EcO_08593 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|187768449|gb|EDU32293.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196]
 gi|188015577|gb|EDU53699.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999606|gb|EDU68592.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355696|gb|EDU74115.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361036|gb|EDU79455.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486]
 gi|189366384|gb|EDU84800.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501]
 gi|189370768|gb|EDU89184.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869]
 gi|189377329|gb|EDU95745.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508]
 gi|194419023|gb|EDX35107.1| putative chemotaxis protein [Shigella dysenteriae 1012]
 gi|208726848|gb|EDZ76449.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733101|gb|EDZ81788.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738666|gb|EDZ86348.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042]
 gi|209159236|gb|ACI36669.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322055|gb|EEC30479.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588]
 gi|254590790|gb|ACT70151.1| chemotaxis motB protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190216|gb|EFW64866.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. EC1212]
 gi|320638165|gb|EFX07914.1| hypothetical protein ECO5101_07089 [Escherichia coli O157:H7 str.
           G5101]
 gi|320654674|gb|EFX22675.1| hypothetical protein ECO7815_10457 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660242|gb|EFX27752.1| hypothetical protein ECO5905_08983 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665008|gb|EFX32118.1| hypothetical protein ECOSU61_13992 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338763|gb|EGD62582.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1044]
 gi|326342450|gb|EGD66230.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7
           str. 1125]
 gi|332097320|gb|EGJ02301.1| lateral flagellar motor protein B [Shigella dysenteriae 155-74]
          Length = 256

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|330910071|gb|EGH38581.1| flagellar motor rotation protein MotB [Escherichia coli AA86]
          Length = 256

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|222032078|emb|CAP74817.1| Protein mbhA [Escherichia coli LF82]
          Length = 261

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|218688122|ref|YP_002396334.1| hypothetical protein ECED1_0264 [Escherichia coli ED1a]
 gi|218425686|emb|CAR06478.1| flagellar system protein [Escherichia coli ED1a]
          Length = 296

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                     + E        K  +L  K    L +LA  I++       +     +  E
Sbjct: 81  PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 137

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++
Sbjct: 138 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYK 197

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V
Sbjct: 198 NNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257

Query: 339 EDRQG 343
             +  
Sbjct: 258 LTKSA 262


>gi|218698824|ref|YP_002406453.1| hypothetical protein ECIAI39_0419 [Escherichia coli IAI39]
 gi|218368810|emb|CAR16558.1| flagellar system protein [Escherichia coli IAI39]
          Length = 261

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L +   V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVEFAPVFDSLDNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|218552836|ref|YP_002385749.1| hypothetical protein ECIAI1_0271 [Escherichia coli IAI1]
 gi|218693715|ref|YP_002401382.1| hypothetical protein EC55989_0255 [Escherichia coli 55989]
 gi|218350447|emb|CAU96134.1| flagellar system protein [Escherichia coli 55989]
 gi|218359604|emb|CAQ97145.1| flagellar system protein [Escherichia coli IAI1]
          Length = 296

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 80  PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 136

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 196

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 197 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 256

Query: 338 VEDRQG 343
           V  +  
Sbjct: 257 VLTKSA 262


>gi|30061847|ref|NP_836018.1| hypothetical protein S0298 [Shigella flexneri 2a str. 2457T]
 gi|56479639|ref|NP_706230.2| hypothetical protein SF0277 [Shigella flexneri 2a str. 301]
 gi|110804360|ref|YP_687879.1| hypothetical protein SFV_0301 [Shigella flexneri 5 str. 8401]
 gi|30040091|gb|AAP15824.1| putative motility protein [Shigella flexneri 2a str. 2457T]
 gi|56383190|gb|AAN41937.2| putative motility protein [Shigella flexneri 2a str. 301]
 gi|110613908|gb|ABF02575.1| putative motility protein [Shigella flexneri 5 str. 8401]
 gi|281599639|gb|ADA72623.1| putative motility protein [Shigella flexneri 2002017]
          Length = 261

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|218550065|ref|YP_002383856.1| hypothetical protein EFER_2750 [Escherichia fergusonii ATCC 35469]
 gi|218357606|emb|CAQ90245.1| flagellar system protein [Escherichia fergusonii ATCC 35469]
          Length = 296

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 80  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 136

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 196

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           ++   +NW LS DRA SA +VL  +G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 197 KSNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 256

Query: 338 VEDRQG 343
           V  +  
Sbjct: 257 VLTKSA 262


>gi|256024126|ref|ZP_05437991.1| hypothetical protein E4_12175 [Escherichia sp. 4_1_40B]
 gi|300947286|ref|ZP_07161489.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|301019019|ref|ZP_07183235.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|299882424|gb|EFI90635.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|300453087|gb|EFK16707.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|315134915|dbj|BAJ42074.1| putative motility protein [Escherichia coli DH1]
          Length = 256

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|325498393|gb|EGC96252.1| hypothetical protein ECD227_2490 [Escherichia fergusonii ECD227]
          Length = 256

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 50  EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 106

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +++   +NW L
Sbjct: 107 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNL 166

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL  +G+ ED++ ++S  A   L  A +P +S NRRI+I+V  +  
Sbjct: 167 SGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSSGNRRIEIMVLTKSA 222


>gi|126734128|ref|ZP_01749875.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2]
 gi|126716994|gb|EBA13858.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2]
          Length = 278

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 119/330 (36%), Gaps = 59/330 (17%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           ++   IIK+K  I    ++ G+WK+ YADF+T +MAFF++MW++NAT +  +K +  Y  
Sbjct: 5   SNAPTIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADY-- 62

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                        F    P  R S         ++I       + G+   +         
Sbjct: 63  -------------FAPTIPINRVSGGGSGAFGGDNIFTEQTLAQSGTGISQPTIGMDPVQ 109

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               + +  +   + +  RD E                                      
Sbjct: 110 SETDAEAAAAVAAQVAALRDIE-------------------------------------- 131

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                A  +      +++D  ++ ++   T  G++I I D     +F   +++P P T  
Sbjct: 132 -----AVLMGQGGESMLSDQALRHIITRLTDEGLVIEIYDLPEVTLFVDDTTVPNPVTAE 186

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +   +  +    +  ++++GH  A     I    W LS  RA     +L   G+   RI 
Sbjct: 187 IATIMARMFTTVSNDVAVKGHLSAKSPLQIDNPVWELSTGRAVQMRLMLQSGGLDPMRIV 246

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340
           + SG       +  D     N RI++++  
Sbjct: 247 RQSGAGDREPAVR-DATAPRNNRIEVILLR 275


>gi|227884752|ref|ZP_04002557.1| chemotaxis protein [Escherichia coli 83972]
 gi|227838353|gb|EEJ48819.1| chemotaxis protein [Escherichia coli 83972]
 gi|307552161|gb|ADN44936.1| putative motility protein [Escherichia coli ABU 83972]
          Length = 256

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|300919511|ref|ZP_07136009.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300413405|gb|EFJ96715.1| OmpA family protein [Escherichia coli MS 115-1]
          Length = 211

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|253774745|ref|YP_003037576.1| hypothetical protein ECBD_3391 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300929521|ref|ZP_07144987.1| OmpA family protein [Escherichia coli MS 187-1]
 gi|253325789|gb|ACT30391.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|300462520|gb|EFK26013.1| OmpA family protein [Escherichia coli MS 187-1]
          Length = 211

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++        ++   +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSITTIAR---DAHMEANLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   DNW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177


>gi|307131627|ref|YP_003883643.1| flagellar motor rotation protein motB [Dickeya dadantii 3937]
 gi|306529156|gb|ADM99086.1| Flagellar motor rotation protein motB [Dickeya dadantii 3937]
          Length = 376

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +         + +     + +L  L +++   +        ++  +L E    G+
Sbjct: 85  GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLKALRPHLLIEMVDEGL 144

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD + +       
Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341
            NW LS DRA ++ + L+  G++E ++ ++ G A    LK A    ++ NRRI ++V ++
Sbjct: 205 SNWELSADRANASRRELIIGGLAEGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264

Query: 342 QG 343
           Q 
Sbjct: 265 QA 266



 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+   + D  NP      +      D     +++D ++      K  +RL+  
Sbjct: 62  TPLKIAITSGPKMSDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121

Query: 131 IFYLSN 136
           I     
Sbjct: 122 IEADPR 127


>gi|90423959|ref|YP_532329.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90105973|gb|ABD88010.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 283

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 119/324 (36%), Gaps = 64/324 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMT 78
           K   ++   ++G+W + +AD M +L  FF+++   +  D    + +       FG  +  
Sbjct: 10  KKKPEEAGGHVGAWFVTFADLMGLLTGFFVMLVSFSHQDQYKLQIVAGSMREAFGVQMDA 69

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
              G+ +                                          ++ +      +
Sbjct: 70  RYSGVIE------------------------------------------KDGLPTRGKVK 87

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             EH       +     +      L   +  +  + L         +   ++ LQ++ + 
Sbjct: 88  NVEHIAPDQATNRPSPDEGGGMAKLGTQLKADREFAL--------ASASLRQALQEMPE- 138

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                       I K V+FE T  G+ + I+DQ   PMF   S +P   T+++++K+   
Sbjct: 139 ---------ITEISKNVMFEETPQGLNLQIVDQEGRPMFPDGSPLPYERTMLLVRKLAAP 189

Query: 259 LAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           L  +   ISI GHT ++  P R+   D + LS  RA +  Q+L   G+    +  ++G A
Sbjct: 190 LRATALRISIVGHTSSTGAPGRDDD-DAFVLSWQRANTVRQILKGEGLPSSHVFAVTGKA 248

Query: 317 HHRLKIASDPMNSANRRIDILVED 340
                    P+ +ANRR+ I +  
Sbjct: 249 DSEPLFPDAPLLAANRRVTITLMR 272


>gi|300823443|ref|ZP_07103573.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300524061|gb|EFK45130.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|320201151|gb|EFW75734.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B]
          Length = 256

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|271500049|ref|YP_003333074.1| OmpA/MotB domain-containing protein [Dickeya dadantii Ech586]
 gi|270343604|gb|ACZ76369.1| OmpA/MotB domain protein [Dickeya dadantii Ech586]
          Length = 376

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +         + +     + +L  L +++   +        ++  +L E    G+
Sbjct: 85  GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLRALRPHLLIEMVDEGL 144

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD + +       
Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341
            NW LS DRA ++ + L+  G+++ ++ ++ G A    LK A    ++ NRRI ++V ++
Sbjct: 205 SNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264

Query: 342 QG 343
           Q 
Sbjct: 265 QA 266



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 56/126 (44%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+   I D  NP      +      D     +++D ++      K  +RL+  
Sbjct: 62  TPLKIAITSGPKISDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121

Query: 131 IFYLSN 136
           I     
Sbjct: 122 IEADPR 127


>gi|239906259|ref|YP_002952999.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239796124|dbj|BAH75113.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 341

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 129/347 (37%), Gaps = 39/347 (11%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           ++K+   D+       W I  AD MT+L+ FFL++  ++  D +  + +           
Sbjct: 7   LRKRRHEDED-----LWPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQQAMVQE 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P  K     +  + D+  PP    +     S   H T +     +     +       +
Sbjct: 62  KPAPKKKTAETAPVTDKTAPPPLPFEKPQVRSKVSHTTLSREPAPLYEQPAQGPQAADAS 121

Query: 130 NIFYLSNSQQSEHCK---NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            +      Q  E  K    +   +  K  +  K  +  K     +       + EK    
Sbjct: 122 KLGEPHPGQPQEPAKAAEPTKPGEPAKTPEAAKPGEQPKGTEPAKADATADATAEKAPKP 181

Query: 187 KR------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                   +K L D+ K++S  L     D     V       G+ +++   R    FD +
Sbjct: 182 GEERTGPTRKSLDDIRKELSGKL-----DVTAGAVEVRPRDNGVELNL---RGAAFFDLA 233

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299
           S+   P  I +L+ I   LA +   +++ GHTD  P  + +   NW LS  RA    + L
Sbjct: 234 SAEVKPGGIPLLRDIAATLAGTPYKVTVEGHTDNLPMESWLYPSNWELSSARASRVARFL 293

Query: 300 MKSGVSEDRISKISGFAHHRLKIAS-DPMN-------SANRRIDILV 338
           +  GV+ D + ++ G A  +    + DP         + NRR+ ILV
Sbjct: 294 IDHGVARDHL-RVEGLADTQPVAPNTDPAGRSIPENQARNRRVVILV 339


>gi|315287740|gb|EFU47143.1| OmpA family protein [Escherichia coli MS 110-3]
          Length = 211

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  VL      I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|313646638|gb|EFS11097.1| lateral flagellar motor protein B [Shigella flexneri 2a str. 2457T]
 gi|332761628|gb|EGJ91908.1| lateral flagellar motor protein B [Shigella flexneri 4343-70]
 gi|332761679|gb|EGJ91958.1| lateral flagellar motor protein B [Shigella flexneri 2747-71]
 gi|332764445|gb|EGJ94678.1| lateral flagellar motor protein B [Shigella flexneri K-671]
 gi|332768577|gb|EGJ98759.1| ompA family protein [Shigella flexneri 2930-71]
 gi|333008733|gb|EGK28197.1| lateral flagellar motor protein B [Shigella flexneri K-218]
 gi|333009709|gb|EGK29159.1| lateral flagellar motor protein B [Shigella flexneri VA-6]
 gi|333022107|gb|EGK41350.1| lateral flagellar motor protein B [Shigella flexneri K-304]
          Length = 256

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|110640466|ref|YP_668194.1| hypothetical protein ECP_0259 [Escherichia coli 536]
 gi|191171446|ref|ZP_03032995.1| putative chemotaxis protein [Escherichia coli F11]
 gi|110342058|gb|ABG68295.1| putative chemotaxis membrane protein [Escherichia coli 536]
 gi|190908380|gb|EDV67970.1| putative chemotaxis protein [Escherichia coli F11]
 gi|312944854|gb|ADR25681.1| hypothetical protein NRG857_01255 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320197285|gb|EFW71901.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327]
          Length = 256

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|193068683|ref|ZP_03049644.1| putative chemotaxis protein [Escherichia coli E110019]
 gi|192958046|gb|EDV88488.1| putative chemotaxis protein [Escherichia coli E110019]
          Length = 256

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLNNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|300921970|ref|ZP_07138116.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|301325438|ref|ZP_07218924.1| OmpA family protein [Escherichia coli MS 78-1]
 gi|300421640|gb|EFK04951.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300847736|gb|EFK75496.1| OmpA family protein [Escherichia coli MS 78-1]
          Length = 211

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177


>gi|312970356|ref|ZP_07784537.1| lateral flagellar motor protein B [Escherichia coli 1827-70]
 gi|310337005|gb|EFQ02143.1| lateral flagellar motor protein B [Escherichia coli 1827-70]
          Length = 256

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA+SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRAFSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|170767971|ref|ZP_02902424.1| lateral flagellar motor protein B [Escherichia albertii TW07627]
 gi|170123459|gb|EDS92390.1| lateral flagellar motor protein B [Escherichia albertii TW07627]
          Length = 222

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  +    L +LA  I++       +     +  
Sbjct: 12  KAKPATVAVPEETEKKARDVNEKTALLKKRSATELGELATSINTIARHAHMEA---NLEM 68

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  +
Sbjct: 69  EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 128

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL  +G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 129 KNNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 188

Query: 338 VEDRQG 343
           V  +  
Sbjct: 189 VLTKSA 194


>gi|71280941|ref|YP_267837.1| flagellar motor protein MotB [Colwellia psychrerythraea 34H]
 gi|71146681|gb|AAZ27154.1| sodium-driven polar flagellar protein [Colwellia psychrerythraea
           34H]
          Length = 314

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 43/314 (13%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72
           +      P  L +W   +AD M++LM FF+++   +  D    K I           N  
Sbjct: 3   EQQCKCPPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKI 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
               +     I  ++  P +     I++   + +      L+  + ++     R E    
Sbjct: 63  EVKDIPKGTSIIAQEFRPGKPEPTPIEVIQQQTMEMTQQMLEFQAGDETSAGGRQEQRGT 122

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
                 Q+     S     +  +D+ ++                            ++++
Sbjct: 123 ERGGQSQNTEDALSQQALDQAKQDMEEAA---------------------------QEQV 155

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +L KKI+  L   + D  ++    E+    ++I I   R    F   S+   P+   V+
Sbjct: 156 NELVKKIAEQLEQQIQDGAIE---LESLGQQVIIRI---RENGSFPSGSAFLQPKFWPVI 209

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           ++IGE+L      I I GHTD       +   NW LS  RA +    L+K       R+ 
Sbjct: 210 REIGELLNTVPGEIMISGHTDNRGVDSELFSSNWDLSSKRAVAIAHQLIKVPDFDATRLV 269

Query: 311 KISGFAHHRLKIAS 324
             +G A  R  + +
Sbjct: 270 A-AGHADTRPLVPN 282


>gi|301019118|ref|ZP_07183322.1| OmpA family protein [Escherichia coli MS 69-1]
 gi|300399377|gb|EFJ82915.1| OmpA family protein [Escherichia coli MS 69-1]
          Length = 211

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++        ++   +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|309797860|ref|ZP_07692242.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|308118544|gb|EFO55806.1| OmpA family protein [Escherichia coli MS 145-7]
          Length = 211

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++        ++   +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSITTIAR---DAHMEANLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177


>gi|170748097|ref|YP_001754357.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654619|gb|ACB23674.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 401

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 4/266 (1%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             S  I D      R      D     +   + +                       +  
Sbjct: 140 PQSAAIGDLGAAGRRGGDAARDPFDPLYWEVDVLAPARAERTAPDGITPPPRQARPDARG 199

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            ++   +           D     D +  +  E     PP++     + +       L  
Sbjct: 200 AEAAGREGEAKPAGPTPVDARPPADRDGEVRAE----GPPVNGPSQASGQGVASAAALKA 255

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I+              V  + T  G+LI++ D  N  MF   S+ P PET+  ++++ +
Sbjct: 256 EIAKIFPPPAPGTSGPRVEVQGTPEGLLINVTDDLNFSMFAVGSAEPRPETVRAMERLAK 315

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
            LA     I +RGHTD+ PFR+   DNWRLS  RA+ A  +L ++G+ E RI ++ G A 
Sbjct: 316 ALAARPGRIVVRGHTDSRPFRSEVYDNWRLSTARAHMASYMLTRAGIDEARIWRVEGAAD 375

Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343
              + A+DP    NRRI+IL++   G
Sbjct: 376 RMPRNAADPKAPENRRIEILLQGSPG 401



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
           N   II+ ++ + +D  ++ G WKI +ADFMT LMA FLV+W+I AT+D+TK +I  YFN
Sbjct: 4   NPPEIIVVRRASDEDDGHHGGVWKIAFADFMTTLMALFLVLWLIKATNDETKTSIANYFN 63

Query: 71  PFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           P      +   KG+ D Q      + N  +          + D++   T         E 
Sbjct: 64  PISLSEPLPLRKGVNDPQ-----PASNDPNAGSKAGEPGGTADMRDKGTPLPPGSVPRER 118

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +F    S  ++          +            +  +   + F P   +  +LA  R 
Sbjct: 119 ELFQDPYSVLAKLAAEVEPGKPQSAAIGDLGAAGRRGGDAARDPFDPLYWEVDVLAPARA 178

Query: 190 KR 191
           +R
Sbjct: 179 ER 180


>gi|89100891|ref|ZP_01173740.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
 gi|89084378|gb|EAR63530.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
          Length = 269

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 66/328 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           K+K       +   SW I YAD +T+L+A F+V++ +++ D    +A+ + FN    +  
Sbjct: 3   KRKKKEHHEEHVDESWLIPYADILTLLLALFIVLFAMSSVDARKFEALSKAFN----DAF 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G FD                                                   S
Sbjct: 59  NGGTGFFD-------------------------------------------------FPS 69

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              +    S  +   + KD  +      ++ + +N      ++ KI  +  K+ L+++ +
Sbjct: 70  PMPDGAMQSADKADTENKDEVEKASAAGTLEEGQNDM---EAEGKIQKLTDKQELKEVEE 126

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+ + +     + +   +    T  G+L++I D      F   S+      + +  +IGE
Sbjct: 127 KVKTYIQN---NGLTDKLETSLTDEGLLVTIRDN---VFFASGSAEVRSGELTIADEIGE 180

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I I GHTD  P +N     NW LS+ RA +  ++L+ +   + R     GF
Sbjct: 181 LLVMDPPRNIIISGHTDNMPIKNSEFESNWELSVMRAVNFMKILLHNKDLDARAFSAKGF 240

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341
              +   ++D       NRR++IL+  R
Sbjct: 241 GEFQPAASNDTKEGRDKNRRVEILILPR 268


>gi|251789151|ref|YP_003003872.1| flagellar motor protein MotB [Dickeya zeae Ech1591]
 gi|247537772|gb|ACT06393.1| OmpA/MotB domain protein [Dickeya zeae Ech1591]
          Length = 376

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224
             +  +         + +     + +L  L +++   +        ++  +L E    G+
Sbjct: 85  GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLRALRPHLLIEMVDEGL 144

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282
            I IID  N PMF   S+   P    +L+ I  +L      IS+ GHTD + +       
Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341
            NW LS DRA ++ + L+  G+++ ++ ++ G A    LK A    ++ NRRI ++V ++
Sbjct: 205 SNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264

Query: 342 QG 343
           Q 
Sbjct: 265 QA 266



 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
              K  +T+   + D  NP      +      D     +++D ++      K  +RL+  
Sbjct: 62  TPLKIAITSGPKMSDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121

Query: 131 IFYLSN 136
           I     
Sbjct: 122 IEADPR 127


>gi|300902537|ref|ZP_07120514.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|301302019|ref|ZP_07208152.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|300405350|gb|EFJ88888.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|300842571|gb|EFK70331.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|315253712|gb|EFU33680.1| OmpA family protein [Escherichia coli MS 85-1]
          Length = 211

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|300955691|ref|ZP_07168041.1| OmpA family protein [Escherichia coli MS 175-1]
 gi|2494512|sp|Q47154|MBHA_ECOLI RecName: Full=Putative protein mbhA
 gi|984586|dbj|BAA07592.1| MbhA [Escherichia coli W3110]
 gi|1552798|gb|AAB08650.1| MbhA [Escherichia coli]
 gi|300317442|gb|EFJ67226.1| OmpA family protein [Escherichia coli MS 175-1]
          Length = 211

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177


>gi|110677964|ref|YP_680971.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh
           114]
 gi|109454080|gb|ABG30285.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh
           114]
          Length = 279

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 133/333 (39%), Gaps = 59/333 (17%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q N   +IIKKK  +    ++ G+WK+ YADF+T +MAFF++MW++NAT +  ++ +  Y
Sbjct: 4   QSNLAPVIIKKKKKVVGGGHHGGAWKVAYADFVTAMMAFFMMMWLLNATTEQQRQGLADY 63

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F P                 P  R S         + I       + G            
Sbjct: 64  FAP---------------TIPINRISGGGDGAFGGDSIFSEETLPQNGL----------- 97

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                          +++  + +  G+        E+  + EE                 
Sbjct: 98  -----------GATSQHATRKQAASGESGNDDDGGERDTSDEE----------------- 129

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              LQ L +++        V +N ++ ++   T  G++I +      P+F+ +S +P P 
Sbjct: 130 ---LQALVEELMGRGGESTVMENALEHIVTRITDEGLVIELFALDGLPLFEPNSDVPTPL 186

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              +++ +  V   +T  I+I  H  + P        W  S DRA     +L ++G+  +
Sbjct: 187 MTQLVELVASVAFAATNDIAIGAHVPSRPIVVAQNPVWDASTDRATRTRLMLQENGLEPE 246

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G A        +PM + N R++I++  
Sbjct: 247 RMQRVTGHADREP-AHLNPMATRNSRVEIVLLR 278


>gi|300977371|ref|ZP_07173862.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|301045873|ref|ZP_07193060.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300302123|gb|EFJ58508.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300409896|gb|EFJ93434.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|315295164|gb|EFU54499.1| OmpA family protein [Escherichia coli MS 153-1]
 gi|315300866|gb|EFU60088.1| OmpA family protein [Escherichia coli MS 16-3]
 gi|324010200|gb|EGB79419.1| OmpA family protein [Escherichia coli MS 57-2]
          Length = 211

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++       +     +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|238782805|ref|ZP_04626834.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970]
 gi|238716228|gb|EEQ08211.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970]
          Length = 296

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 6/218 (2%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +   L   Q +++ K  L     +G+ +  S         +       + ++ +  +  +
Sbjct: 16  SSTPLQREQIADYFKTPLKLGMAQGERVSLSDSPIPGGGDDFAKQEGEVFRQTLNKLDER 75

Query: 190 KR---LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           K+   LQ   +K+   +       N    +    T  G+LI +ID +  PMF   S    
Sbjct: 76  KQSLNLQRAHQKLKDLIKNDPRLSNYKSNLRLSLTEDGLLIQVIDSQERPMFKVGSKELE 135

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303
           P    +LQ +  VL      IS+ GHTD+ P+        NW LS DRA ++ Q L+  G
Sbjct: 136 PYMRGILQALVPVLNDLPNKISLTGHTDSLPYARGEVGYSNWELSADRANASRQTLVAGG 195

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           ++E++  ++ G A+        P +  NRRI ILV  +
Sbjct: 196 LAENKFLRVIGTANMMNLENVRPDDPINRRISILVLSK 233



 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+++++    ++ I  YF    K  M   + +    +P         D 
Sbjct: 1   MTAMMAFFLVMWLLSSSTPLQREQIADYFKTPLKLGMAQGERVSLSDSPIPGGGD---DF 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY--LSNSQQSEHCKNSLTRDSEKGKDLC 158
           +  E         K+    Q    QR    +     ++ + S +  N     +E G  + 
Sbjct: 58  AKQEGEVFRQTLNKLDERKQSLNLQRAHQKLKDLIKNDPRLSNYKSNLRLSLTEDGLLIQ 117

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                E+ + K  +  L P  +  + A+     L DL  KIS
Sbjct: 118 VIDSQERPMFKVGSKELEPYMRGILQALV--PVLNDLPNKIS 157


>gi|152996653|ref|YP_001341488.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837577|gb|ABR71553.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 301

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 2/221 (0%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
             ++ + +E      + +  + +  N +       K   K  DL+       +       
Sbjct: 51  SPEELRSIEGYFQDPTGASTAGYSANPIDLGGSPAKSAEKKLDLQLPQAGSIDVQSRDKF 110

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
                     K + ++ ++  S ++ L++    K +  E T  G+ I+++D  + PMF++
Sbjct: 111 LGNGPDSAESKSINNMLREEMSKMNTLLSQQ--KNMRIEITPLGVRITLLDDPDKPMFER 168

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+  +P+    L  +  +    T  I I GHTD+S F     DNW LS  RA +A  +L
Sbjct: 169 GSARMMPDIENTLLSMAPIFNKVTNPIVITGHTDSSKFGGGRVDNWDLSALRANAARHIL 228

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            + GV + RI+++ G +        D  ++ NRRI I +  
Sbjct: 229 EEGGVEDKRIAQVIGLSDTIPYNRLDTDSAENRRISITLLT 269



 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73
           ++I++   I    ++ G+WKI  ADF   +MAFFLV+WI++    +  ++IE YF +P G
Sbjct: 8   LVIRRVKKIKKGGHHGGAWKIALADFALAMMAFFLVLWIMSVASPEELRSIEGYFQDPTG 67

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
            +    S    D    P +S++ K+DL + +   I   S D  +G+     + + + N +
Sbjct: 68  ASTAGYSANPIDLGGSPAKSAEKKLDLQLPQAGSIDVQSRDKFLGNGPDSAESKSINNML 127

Query: 132 FYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
               +   +     KN     +  G  +    D +K + +  +  + P  +  +L+M 
Sbjct: 128 REEMSKMNTLLSQQKNMRIEITPLGVRITLLDDPDKPMFERGSARMMPDIENTLLSMA 185


>gi|92114147|ref|YP_574075.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91797237|gb|ABE59376.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 330

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 109/319 (34%), Gaps = 71/319 (22%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
            ++ G+WKI YADF    M   + ++++                                
Sbjct: 18  GHHGGNWKIAYADF----MTALMALFLV-------------------------------- 41

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
                        L I   + KN +D                 +    S S       + 
Sbjct: 42  -------------LWILSMVPKNELDNIAEYFRTPLAVALTGGDKSTASTSAIPGGGADP 88

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
              + E+ +   +    ++S   +E   L  L +     ++    L+ ++ ++       
Sbjct: 89  TFSEGERRRLDIR----QQSRPSDEIRRLRALRERLEREVREDPNLRQMSSQL------- 137

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
                      +    G+ I ++D    PMF+  S+   P    +LQ +   L      I
Sbjct: 138 ---------RTDFIPEGLRIQLVDTDKRPMFELGSARLAPYMRDLLQALAPELNDVPNAI 188

Query: 267 SIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           S+ GHTD   +        NW LS DRA ++ + L+ +G+   ++ ++SG         +
Sbjct: 189 SLTGHTDDLRYAGGEKGYSNWELSADRANASRRALVAAGLDSSKLLRVSGMGARVNLEGT 248

Query: 325 DPMNSANRRIDILVEDRQG 343
            P ++ NRRI I+V   + 
Sbjct: 249 QPSDAVNRRISIVVLSERA 267


>gi|300991173|ref|ZP_07179516.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|300305611|gb|EFJ60131.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|324015565|gb|EGB84784.1| OmpA family protein [Escherichia coli MS 60-1]
          Length = 211

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++        ++   +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ E+++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177


>gi|324019871|gb|EGB89090.1| OmpA family protein [Escherichia coli MS 117-3]
          Length = 211

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + E        K  +L  K    L +LA  I++        ++   +  E    G+ + 
Sbjct: 5   EETEKKARDVNEKTVLLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I D +N  MF++ S+  +P    +L ++  V       I I GHTDA  ++N   +NW L
Sbjct: 62  IKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           S DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+V  +  
Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177


>gi|331681649|ref|ZP_08382282.1| MbhA protein [Escherichia coli H299]
 gi|331080851|gb|EGI52016.1| MbhA protein [Escherichia coli H299]
          Length = 261

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 45  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I   GHTDA  +
Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIFTGHTDAMAY 161

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221

Query: 338 VEDRQG 343
           V  +  
Sbjct: 222 VLTKSA 227


>gi|117621021|ref|YP_857806.1| flagellar motor protein MotB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562428|gb|ABK39376.1| sodium-driven polar flagellar protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 299

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 63/335 (18%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
                 P  L  +   +AD M++LM FF+++      D    K I           N   
Sbjct: 2   AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 61

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +  ++  P R     ID  + +   +T+  +D + G  +Q   +       
Sbjct: 62  VKDIPKGTSVIAQEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGDADQAGGH------- 114

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                                               +K E   +   ++++    +++++
Sbjct: 115 ------------------------------------DKSEEKLVGGDTQQEAQKQQQQEQ 138

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
              LAK ++  +   + D     +  E     I+I I   R    F   S+   P+   V
Sbjct: 139 SNALAKALADQMKAQIQDGA---IEVEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 192

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
           ++K+  +L      I+I GHTD +   + + + NW LS  RA +    ++K  G    R+
Sbjct: 193 VRKVAALLKDVPGEITISGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 252

Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342
             + G A  +  + +  P N   NRR++I +   +
Sbjct: 253 V-VQGMADSQPLVPNTSPENRRMNRRVEISIMQGK 286


>gi|194427556|ref|ZP_03060104.1| putative chemotaxis protein [Escherichia coli B171]
 gi|194414326|gb|EDX30600.1| putative chemotaxis protein [Escherichia coli B171]
          Length = 256

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 88/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 37  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P     L ++  V       I I GHTDA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTQLVELAPVFDSLDNKIIITGHTDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|15887914|ref|NP_353595.1| flagellar motor protein MotB [Agrobacterium tumefaciens str. C58]
 gi|15155508|gb|AAK86380.1| flagellar motor protein, PAL/OmpA family [Agrobacterium tumefaciens
           str. C58]
          Length = 433

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 1/273 (0%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                  T + G    ++P +     +          +   +    +  +++     E +
Sbjct: 162 AADSGPATGASGGEAYRDPFDPDFWTQQVKITRADQKQVPSEAAQAADGKQQDVAAKEAD 221

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               + +            D +  +             ++     P   +    +    +
Sbjct: 222 KSAEAVTLVQAGKPADKAEDGKSMEIAAVVPQQRPDAAEQAALAKPNPDQASKASDAEWE 281

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +   L ++I   +SG +   + +G++      G+L++I DQ  TPMF+  S++P  E ++
Sbjct: 282 KADTLREEIEKQISG-ITGKLSEGLVVTPAEGGLLLTISDQAETPMFNIGSAVPRGELVL 340

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            ++KIG++L      + IRGHTD   F+  A DNWRLS+DRA+SAY +L++ G+SE+R+ 
Sbjct: 341 AMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEERVK 400

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++SGFA  RL++ S+P+  ANRRI+IL+E  +G
Sbjct: 401 QVSGFADRRLQVPSNPLADANRRIEILLEADRG 433



 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 10/220 (4%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S G+ +      III K+        + G+WKI YADFMT +MAFFLVMW++NA +++TK
Sbjct: 2   SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH--------ITKNSVDLK 114
            ++  YFNP   +    S    ++    E   Q K   +I            T   +  +
Sbjct: 62  ASVASYFNPIKLSDEKPSSKGLEKPADKEEGVQKKDQSNIQAEKVTKGSAAATGEDLTSQ 121

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
            G  +   +    EN    L+   Q    + +++   E G                 + F
Sbjct: 122 TGEQSNFSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPF 181

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            P    +++   +  ++   +  + +    G   D   K 
Sbjct: 182 DPDFWTQQVKITRADQK--QVPSEAAQAADGKQQDVAAKE 219


>gi|320183885|gb|EFW58714.1| Flagellar motor rotation protein MotB [Shigella flexneri CDC
           796-83]
          Length = 256

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 88/186 (47%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                   ++   E          +  A+ +KK   +L +  +S  +     ++   +  
Sbjct: 37  PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GH DA  +
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHIDAMAY 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  + +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|238784596|ref|ZP_04628602.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC
           43970]
 gi|238714465|gb|EEQ06471.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC
           43970]
          Length = 256

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 4/226 (1%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            ++++     N                S +   +    +      +++ +        P 
Sbjct: 9   EERQEIVAQLNGETIFDKQSYISIPSKSKSGGGKFSDSIDGHEQAKETKSNLAVEVPEPE 68

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
              + +  K  K +++L++ I    S   A + +K    E    G+ I I D +   MF 
Sbjct: 69  QSLEEVVDKSGKEMEELSRIIMQITSTYDAQSNLK---MEVVPQGLRILIQDDKQRDMFQ 125

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297
           +SS++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A++
Sbjct: 126 RSSALLTPFFSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVRYNNWNLSGERALMAHK 185

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            L+K G+SE+R+ +I+  A   L   ++P+ ++NRRI+I+V  +  
Sbjct: 186 ALVKGGLSEERVLQINAMADQMLLTPTEPLAASNRRIEIMVLTKTA 231


>gi|91977304|ref|YP_569963.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91683760|gb|ABE40062.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 286

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 114/323 (35%), Gaps = 62/323 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMT 78
           K    +  +    W + +AD M +L++FF+++   +  D    + +       FG    +
Sbjct: 13  KRKSTEEAHLGHGWFVTFADLMALLVSFFVMLVSFSTQDLQKLQIVAGSMREAFGVQQDS 72

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
              G+                                             + +      +
Sbjct: 73  RFAGVV------------------------------------------ETDGVPVQGKIR 90

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
              +       ++   ++   +         E  + L         +   ++ LQD+ + 
Sbjct: 91  SKTNVAPDQASNTPHLEEAGGAGSSASKAKAEREFAL--------ASASLRQALQDVPE- 141

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                       + K V+FE T  G+ + + DQ   PMF + S++P   T +++ ++   
Sbjct: 142 ---------LAEMSKNVVFEETPLGLNLELTDQEGRPMFPEGSAVPYERTRMLIARLAAP 192

Query: 259 LAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +   +SI GHT A+P   +   D + LS  RA +  QVL + G++  RI  ++G   
Sbjct: 193 LRATALRVSIVGHTAAAPVNADDEYDAFDLSTSRANAVRQVLKREGLAASRIMLVAGKGD 252

Query: 318 HRLKIASDPMNSANRRIDILVED 340
                   P  +ANRR+ I +  
Sbjct: 253 GEPLFPEAPTLAANRRVTISLLR 275


>gi|260364262|ref|ZP_05776961.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030]
 gi|308113750|gb|EFO51290.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030]
          Length = 278

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 47/308 (15%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              + + S     S   D ++ +    S ++E                            
Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQSEEMSQEMET--------------------------- 159

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L + I   L   +       +  E     I+I +   R    F + S+   P+   ++
Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211

Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           ++I E++     ++ I GHTD       + R NW LS  RA S  Q + K  G S  R+ 
Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270

Query: 311 KISGFAHH 318
           ++ G A  
Sbjct: 271 RVRGMADT 278


>gi|326795804|ref|YP_004313624.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326546568|gb|ADZ91788.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 300

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 3/213 (1%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-KILAMKRK 189
           I    N               + G    KS + +  +   E      +++E K       
Sbjct: 56  IEGYFNDPLGPSTAGYSANPIDLGGSPAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDG 115

Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K ++ +   +   L    + ++    +  E T  G+ I+++D    PMF++ S+  +P++
Sbjct: 116 KEIERMNALLEQELKRQGLMNSEETNMRIEITPQGVRITLLDDPTKPMFERGSARLMPDS 175

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307
             VL  IG +LA     ISI GHTD+SP+ +    DNW LS  RA SA +++ + GVS+ 
Sbjct: 176 ENVLLGIGSILARLKNPISISGHTDSSPYVDEREIDNWDLSSARANSARKIIEEGGVSDK 235

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R++++ G A        DP ++ NRRI I +  
Sbjct: 236 RMAQVIGLADSIPYNRFDPTSAENRRISITLLT 268



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-P 71
           + ++I++        ++ G+WKI  ADF   +MAFFLV+WIIN        AIE YFN P
Sbjct: 4   EELVIRRVKRRKKAGHHGGAWKIALADFALAMMAFFLVLWIINVASPQELAAIEGYFNDP 63

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQRLEN 129
            G +    S    D    P +S++ K+DL + E  +   V  + K G  N  K+ +R+  
Sbjct: 64  LGPSTAGYSANPIDLGGSPAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDGKEIERMNA 123

Query: 130 NIFYLSNSQ--QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
            +      Q   +    N     + +G  +    D  K + +  +  L P S+  +L
Sbjct: 124 LLEQELKRQGLMNSEETNMRIEITPQGVRITLLDDPTKPMFERGSARLMPDSENVLL 180


>gi|311992352|gb|ADQ26749.1| MotB-1 [Aeromonas hydrophila]
          Length = 298

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 63/335 (18%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73
                 P  L  +   +AD M++LM FF+++      D    K I           N   
Sbjct: 1   AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 60

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131
              +     +  ++  P R     ID  + +   +T+  +D + G               
Sbjct: 61  VKDIPKGTSVIAQEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGD-------------- 106

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                                         DL    +K E   +   ++++    +++++
Sbjct: 107 -----------------------------ADLAGGHDKSEEKLVGGDTQQEAQKQQQQEQ 137

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
              LAK ++  +   + D  ++    E     I+I I   R    F   S+   P+   V
Sbjct: 138 SNALAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 191

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
           ++K+  +L      I++ GHTD +   + + + NW LS  RA +    ++K  G    R+
Sbjct: 192 VRKVAALLKDVPGEITVSGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 251

Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342
             + G A  +  + +  P N   NRR++I +   +
Sbjct: 252 V-VQGMADSQPLVPNTSPENRRMNRRVEISIMQGK 285


>gi|238793598|ref|ZP_04637221.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC
           29909]
 gi|238727013|gb|EEQ18544.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC
           29909]
          Length = 255

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            +++ Q +   +   +   Q           S  GK        E++   + N  +    
Sbjct: 7   SEEERQEIVAQLNGQTIFSQQSFISIPSKSKSGGGKFSDSIDGKEQAKETKSNLAVEVPE 66

Query: 180 KEKILAM---KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            E+ L     K +K +++L++ I    S   A      +  E    G+ I I D +   M
Sbjct: 67  PEQSLEEVVDKSRKEMEELSRIIMQITSAYDAQ---SNLQMEVVPQGLRILIQDDKQRDM 123

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSA 295
           F +SS++  P    +L ++          I I GHTDAS +R+ +  +NW LS +RA  A
Sbjct: 124 FQRSSAVLTPFFNRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMA 183

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ L+K G+SE R+ +I+  A   L   ++P+ + NRRI+I+V  +  
Sbjct: 184 HKALVKGGLSEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMVLTKTA 231


>gi|325923841|ref|ZP_08185450.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
 gi|325545675|gb|EGD16920.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
          Length = 329

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 122/326 (37%), Gaps = 52/326 (15%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEDHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            TA  G  +  +P +      +    D      +  +K G+             +  ++ 
Sbjct: 54  TTAFGGSSNAASPVQIGKTQTLGADYDRPSVIKAGVIKAGAPMAASNGPTDPTLLPSMA- 112

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                                 +P   + +    + ++++  +A
Sbjct: 113 ----------------------------------AQMRMPVSLRNQAQLARAQRQMDAVA 138

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 139 AQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGTARDTLSTLA 192

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 193 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 251

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 252 GEFRARADNSTEAGRNANRRVVLIIL 277


>gi|289672567|ref|ZP_06493457.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 240

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 1/199 (0%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
            L    E   +   + +++ + + +        ++ K  A+++++    L +  +     
Sbjct: 22  DLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQERLEMLLQELQNKVQEN 81

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
                    +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +      
Sbjct: 82  PQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNK 141

Query: 266 ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           +SI GHTDA+PF  +    NW LS +RA +A + L+     + +++++ G+A   L    
Sbjct: 142 VSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQ 201

Query: 325 DPMNSANRRIDILVEDRQG 343
           +P N  NRRIDI+V  ++ 
Sbjct: 202 NPTNPINRRIDIVVLTKKA 220


>gi|207723077|ref|YP_002253485.1| chemotaxis motility protein b [Ralstonia solanacearum MolK2]
 gi|206588269|emb|CAQ18823.1| probable chemotaxis motility protein b [Ralstonia solanacearum
           MolK2]
          Length = 171

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +L + T  G+ I I+DQ+N PMF  +S+   P    +L+++G  L      IS+ GHTDA
Sbjct: 1   MLIDMTSEGLRIQIVDQQNRPMFANASAEVEPYMRTILRELGSALNDVPNPISLSGHTDA 60

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           + +       NW LS DRA ++ + L+  G+  ++++++ G         +D  N  NRR
Sbjct: 61  TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 120

Query: 334 IDILVEDRQ 342
           I I+V + +
Sbjct: 121 ISIVVLNNR 129


>gi|218509333|ref|ZP_03507211.1| flagellar motor protein MotB [Rhizobium etli Brasil 5]
          Length = 228

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
                + +  + +             E  +     +++ GK        EK    E+N  
Sbjct: 2   ATEVAKAEDMKPVPLATDQKPAKDAKESKETKGAPETKGGKATDGKAPDEKKAEAEKNAD 61

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
               + +     +R+K+  D  ++  +   G VA  + +G+    +  G+L+SI DQ + 
Sbjct: 62  HQKDADKSAAETERQKKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDD 121

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            MF+  S++P  E ++ +++IG +L      +++RGHTD   ++    +NWRLS+DRA S
Sbjct: 122 SMFNIGSAVPRQEMVLAMERIGTILKERGGAVAVRGHTDGRQYKGGQNENWRLSMDRAQS 181

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           AY +L++ G+ E RIS++SGFA  RLK+ +DP N+ANRRI+ILV+
Sbjct: 182 AYYMLVRGGLDEKRISQVSGFADRRLKLPADPFNAANRRIEILVQ 226


>gi|289667244|ref|ZP_06488319.1| flagellar motor protein MotD [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 324

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 124/326 (38%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  ++ +P +      +                                      
Sbjct: 54  TSAFGGSSNKASPVQLGKTQSLG------------------------------------- 76

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              ++H + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 77  ---ADHDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALASNARTTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|322433005|ref|YP_004210254.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165232|gb|ADW70936.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 309

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 192 LQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           L  L K +   +  + + N + K +    T  G+ I +++      F+  SS P P    
Sbjct: 90  LAALKKDLMRAIEKIDSLNRLKKQIEMTVTEEGLRIELVEDAKGTFFETGSSKPTPALEE 149

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L+ + E L      ISI GHTDA P+       NW LS DRA  A + + ++G+  D++
Sbjct: 150 ILKVLSEQLKSLPNSISIEGHTDAQPYATATVYGNWELSTDRANVARREMQENGIRTDQV 209

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           S++ GFA  RL +   P++++NRRI ++V++
Sbjct: 210 SQVRGFADQRLHVPEKPLDASNRRISLVVQN 240



 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 13  QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-P 71
           Q II+  K       ++ G+WK+ YADF+T +M+ F+V+W++++T   T++ I  YFN P
Sbjct: 6   QPIIVI-KKKGAHGGHHGGAWKVAYADFVTAMMSLFIVLWLMSSTSKQTQEEIAGYFNDP 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
            G +    ++G   ++   E    +   L  D       +D       Q +     E   
Sbjct: 65  KGTSTKHGTEGKESKKEEKESKKDDLAALKKDLMRAIEKIDSLNRLKKQIEMTVTEEGLR 124

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
             L    +    +   ++ +   +++ K
Sbjct: 125 IELVEDAKGTFFETGSSKPTPALEEILK 152


>gi|21231338|ref|NP_637255.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768610|ref|YP_243372.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112997|gb|AAM41179.1| MotB protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573942|gb|AAY49352.1| MotB protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 324

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 123/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            TA  G     +P +  +   +    D                                 
Sbjct: 54  TTAFGGSSKAASPVQLGNTQSLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  +A
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVA 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++++ TLS L+   +         R  + I  ++  +  +F   S++        L  + 
Sbjct: 134 QQLNKTLSPLIDKQL-----ITIRRRDLWIE-VEINSDILFVTGSALLAGSARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 AVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|188991572|ref|YP_001903582.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733332|emb|CAP51531.1| motB1 [Xanthomonas campestris pv. campestris]
          Length = 324

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 123/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEDHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            TA  G     +P +  +   +    D                                 
Sbjct: 54  TTAFGGSSKAASPVQLGNTQSLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  +A
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVA 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++++ TLS L+   +         R  + I  ++  +  +F   S++        L  + 
Sbjct: 134 QQLNKTLSPLIDKQL-----ITIRRRDLWIE-VEINSDILFVTGSALLAGSARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 AVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|254706492|ref|ZP_05168320.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 284

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 31/278 (11%)

Query: 95  QNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
             K+    D+ +   TK   D  +   + +++ Q        L+          + +   
Sbjct: 6   DGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFREPYAMLAELAHETGVLQNQSAKG 65

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK--------------------ILAMKRKKR 191
           + G     S           + F P     K                        K+ + 
Sbjct: 66  DGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDLTPPAPQTVPQTAPLPQAQPKKAET 125

Query: 192 LQDLAKKISSTLSGLVADNIVK--------GVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            ++L   +    +G  A N  K         V       G++I + D+ +  MF   S+ 
Sbjct: 126 QEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVPVEGGVMIQLTDKVDYGMFTIGSAK 185

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    + +L++I +V+A     + I GHTDA PF++   DN RLS  RA  AY +L++ G
Sbjct: 186 PDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATYDNRRLSSARAQMAYYMLVRGG 245

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           + E R+ ++ G+A    K  +DP  + NRRIDI ++ +
Sbjct: 246 LDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 283


>gi|261313945|ref|ZP_05953142.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
 gi|261302971|gb|EEY06468.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 283

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 31/278 (11%)

Query: 95  QNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
             K+    D+ +   TK   D  +   + +++ Q        L+          + +   
Sbjct: 5   DGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFREPYAMLAELAHETGVLQNQSAKG 64

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK--------------------ILAMKRKKR 191
           + G     S           + F P     K                        K+ + 
Sbjct: 65  DGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDLTPPAPQTVPQTAPLPQAQPKKAET 124

Query: 192 LQDLAKKISSTLSGLVADNIVK--------GVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            ++L   +    +G  A N  K         V       G++I + D+ +  MF   S+ 
Sbjct: 125 QEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVPVEGGVMIQLTDKVDYGMFTIGSAK 184

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P    + +L++I +V+A     + I GHTDA PF++   DN RLS  RA  AY +L++ G
Sbjct: 185 PDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATYDNRRLSSARAQMAYYMLVRGG 244

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           + E R+ ++ G+A    K  +DP  + NRRIDI ++ +
Sbjct: 245 LDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 282


>gi|166711987|ref|ZP_02243194.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 324

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G     NP +      +    D                                 
Sbjct: 54  TSAFGGSSTAANPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|90418368|ref|ZP_01226280.1| putative chemotaxis protein motB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338040|gb|EAS51691.1| putative chemotaxis protein motB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 413

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 1/252 (0%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P         D              +  +   +      +  +     S +         
Sbjct: 160 PGLNGGDAYRDPFDPASWQLAPNATESAAVIDEAPPSEFKTAVLPNDMSDEPVPVDAETQ 219

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
            ++    +     +   +   E              A+ +  R  +L  +I++  +    
Sbjct: 220 AEAVAEANAEAEAETPDAGEAELAEADADAKPADGEAVAQADRADELKAEIAAEFARQ-G 278

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           + +           G+ ISI D   + MF+  S+ P P+ + ++++I  VL+     +SI
Sbjct: 279 EPLPTNFEVVPGEGGVTISIADDMMSGMFEVGSARPTPQVVAMMERIASVLSKQPGNVSI 338

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           RGHTD+ PFR+   DNWRLS  RA+ AY +L + G+ EDR+  I G A    KIA DP  
Sbjct: 339 RGHTDSRPFRSAQYDNWRLSTARAHMAYYMLARGGLDEDRVKAIEGVADRAPKIADDPEA 398

Query: 329 SANRRIDILVED 340
           +ANRRI+IL+ +
Sbjct: 399 AANRRIEILLTE 410



 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 3/190 (1%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
           G  + +  + II++++    +  ++ G WKI +ADFMT +MAFFLVMW+  A+D  T+K 
Sbjct: 6   GAGHLDRQEIIIVRRRGGHGEEAHHGGVWKIAFADFMTAMMAFFLVMWLTQASDMATRKQ 65

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           + QYFNP    L  AS      +   + +S+++ +  I +  T      K  + +Q+   
Sbjct: 66  VAQYFNPIR--LNDASPATRGVEQSDDGASRDENENGISKADTNGDPHGKPLAGDQEGGE 123

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           +       Y   ++ +    +  T + +   D      L    +   + F P   +    
Sbjct: 124 EEALFRDPYAVLAEIAAEGASETTGELQGKPDGTGLPGLNGG-DAYRDPFDPASWQLAPN 182

Query: 185 AMKRKKRLQD 194
           A +    + +
Sbjct: 183 ATESAAVIDE 192


>gi|310816853|ref|YP_003964817.1| OmpA/MotB [Ketogulonicigenium vulgare Y25]
 gi|308755588|gb|ADO43517.1| OmpA/MotB [Ketogulonicigenium vulgare Y25]
          Length = 284

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 122/333 (36%), Gaps = 68/333 (20%)

Query: 9   QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           Q  +Q IIIK+K  +    ++ G+WK+ YADF+T +MAFFL+MWII              
Sbjct: 16  QTGNQRIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWII-------------- 61

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            N   +         F    P    S     +          V   +G            
Sbjct: 62  -NSITEEQRDGLANFFATGTPVSTVSGGADGMFGGRDSQSQQVGPAVG------------ 108

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                      S     +    + +G    +S+D+                         
Sbjct: 109 -----------SGMDYITGRMPTARGASAAQSSDILA----------------------- 134

Query: 189 KKRLQDLAKKIS-STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              L+D+A+ +S  +   LV D I + ++   T  G++I +    + P+F    ++  P 
Sbjct: 135 ---LEDIARVLSGQSGESLVDDAIQRHIITRMTDEGLVIEVFSTPDAPVFQPGGTVLTPL 191

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           ++ ++Q I  V A     I++  H          +  W L+  RA +    L  +GV+  
Sbjct: 192 SLAIIQMIASVAAQVENGIAVAAHLPQQ--AGTDQGAWALTAARADTIRAALEGAGVAPV 249

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           R+ +++G A     I  DP    N R++I V  
Sbjct: 250 RLRRVTGHADRSP-ITLDPTVQRNDRVEITVLR 281


>gi|319787078|ref|YP_004146553.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465590|gb|ADV27322.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 323

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 125/329 (37%), Gaps = 55/329 (16%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++K   +   +   +W I YAD MT+L+AFF+VM+ I+  ++   + +          L 
Sbjct: 3   RRKKHEEHGNH--EAWAIPYADLMTLLLAFFVVMYAISTLNEGKYRVLAD-------ALT 53

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
            A  G     NP +  +                               +L+   F   + 
Sbjct: 54  AAFGGAPRTINPVQVGN------------------------------HQLQGADFDRPSP 83

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            QS        R          +  L  ++       +P    ++    + +++L  +A 
Sbjct: 84  IQSGA------RSGPSAPSPAPNPTLLPALASHMRTGVPVDVSDRATVQRAQRQLGTIAA 137

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS LV   +   +        + + I    +  +FD  S+        VL ++ +
Sbjct: 138 RLEEALSPLVDARL---ITVRRAELWLEVEI---NSDILFDTGSASLDASARQVLSRLAD 191

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           VL  +   + + G+TD  P   +    NW LS  RA S   +   +GV+ +R++ + G+ 
Sbjct: 192 VLRDTPNPVRVEGYTDDRPINTVQFPSNWELSAARAASVVHLFSANGVAPERLAMV-GYG 250

Query: 317 HHRLKIAS--DPMNSANRRIDILVEDRQG 343
            HR +  +  +   + NRR+ ++V    G
Sbjct: 251 EHRPRADNLTEEGRNRNRRVVLIVLAAPG 279


>gi|254504256|ref|ZP_05116407.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222440327|gb|EEE47006.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 471

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 10/281 (3%)

Query: 66  EQYFNPFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
           E Y +PF         G        +    P R           +    +        T+
Sbjct: 191 EAYRDPFDPQFWQFRPGRGVDGAAAETAGLPTRPGSGNGAGQSADQADGDKSWNAPFETD 250

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
              +  + ++     S +  +     S    + K + +   +  ++  +           
Sbjct: 251 GSTELAQTKSGTGPTSETGTTSGDGPSEFTGTSKNQIVAHVSRRDQETSLAAEAEGGATE 310

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            E +        L      +     G + +N    +       G LIS+ D +N  MF  
Sbjct: 311 AETVPGALLVAELT----TVLDAAEGTLLENTAAQITVVRQDDGALISLTDDQNFGMFAI 366

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+ P PE + +L+++G+V++ +   I I GHTDA PF++   DNWRLS  RA+ A  +L
Sbjct: 367 GSAEPRPELVSLLERLGKVISKTGAQIVITGHTDARPFKSKTYDNWRLSSARAHMALYML 426

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            + GV  DR  +I G A   LK A DP  ++NRR++I + +
Sbjct: 427 SRGGVGADRFVRIEGAADRHLKNAEDPFAASNRRVEIYLLE 467



 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%)

Query: 12  DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71
           ++ +I++++   DD     G WKI YADFMT LMAFFLVMW+IN TD+  ++ + QYFNP
Sbjct: 3   NEIVIVRRRHNWDDDEKPHGVWKIAYADFMTALMAFFLVMWLINVTDESVRRGVAQYFNP 62

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                   ++   ++      +++N   L   +    +  +  +  + +        N  
Sbjct: 63  VKLASTAPNRKGLNDPIVNGDTNENGTKLFTGKLGGTDEQESTLERSGEADVETEGVNAS 122

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDL 157
                   +     S        + +
Sbjct: 123 GAAEMKAAAGAQAASGEFTQSHPESI 148


>gi|325928224|ref|ZP_08189430.1| flagellar motor protein [Xanthomonas perforans 91-118]
 gi|325541413|gb|EGD12949.1| flagellar motor protein [Xanthomonas perforans 91-118]
          Length = 324

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  ++ +P +      +    D                                 
Sbjct: 54  TSAFGGSSNKASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+
Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|325916150|ref|ZP_08178436.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537641|gb|EGD09351.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 324

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 117/326 (35%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G     +P +      +    D                                 
Sbjct: 54  TSAFGGSSTNASPVQLGKTQSLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TLS L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLSPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGGARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P   +    NW LS  RA S   +    G++  R++ + G+
Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATVQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246

Query: 316 AHHRLKIASDPMNSA--NRRIDILVE 339
              R +  +        NRR+ +++ 
Sbjct: 247 GEFRARADNTTEAGRNANRRVVLIIL 272


>gi|58582454|ref|YP_201470.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427048|gb|AAW76085.1| MotB protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 286

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G     +P +      +    D                                 
Sbjct: 54  TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|39935962|ref|NP_948238.1| chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009]
 gi|39649816|emb|CAE28338.1| possible chemotaxis protein MotB2 [Rhodopseudomonas palustris
           CGA009]
          Length = 326

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 110/321 (34%), Gaps = 61/321 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
               +  +    W + +AD M +L++FF+++   +  D    + +     + FG    + 
Sbjct: 55  KKKAEEAHATHGWFVTFADLMGLLVSFFVMLVSFSTQDLRKMQIVAGSMRDAFGVQQNSR 114

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+ +    P +           E  +      + G +     + + E           
Sbjct: 115 FAGVIETDGVPVQGKVKSKMNVAPEQASNTPHLEESGGSGSAASHAKAEREF-------- 166

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                                                      + +   ++ LQD+ +  
Sbjct: 167 ------------------------------------------ALASASLRQALQDVPE-- 182

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+FE T  G+ + + DQ   PMF   S++P   T  ++ ++   L
Sbjct: 183 --------LAEMSKNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPL 234

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             ++  + I GHT A+  +    D   LS++RA +  +VL + G+   ++  + G     
Sbjct: 235 RATSLRVIIVGHTAATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGE 294

Query: 320 LKIASDPMNSANRRIDILVED 340
                 P  +ANRR+ I +  
Sbjct: 295 PLFPDAPALAANRRVTITLMR 315


>gi|289662354|ref|ZP_06483935.1| flagellar motor protein MotD [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 324

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 121/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  +  +P +      +    D                                 
Sbjct: 54  TSAFGGSSNAASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARATLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|84624345|ref|YP_451717.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368285|dbj|BAE69443.1| MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 324

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G     +P +      +    D                                 
Sbjct: 54  TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|294624200|ref|ZP_06702921.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665070|ref|ZP_06730375.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601500|gb|EFF45516.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605151|gb|EFF48497.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 324

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  ++ +P +      +    D                                 
Sbjct: 54  TSAFGGSSNKASPVQLGKTQSLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+
Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|21242652|ref|NP_642234.1| flagellar motor protein MotD [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108121|gb|AAM36770.1| MotB protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 324

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  ++ +P +      +    D                                 
Sbjct: 54  TSAFGGSSNKASPVQLGKTQSLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+
Sbjct: 188 AVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|82940569|emb|CAJ44300.1| putative Chemotaxis Motility protein B (MotB) [Rhizobium
           leguminosarum bv. viciae]
          Length = 146

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/146 (43%), Positives = 97/146 (66%), Gaps = 1/146 (0%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I+  + G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E ++ ++KIG 
Sbjct: 2   QIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGA 60

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +L      I+IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA 
Sbjct: 61  ILKARGGAIAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFAD 120

Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343
            RLK+ SDP N+ NRRI+ILV+  QG
Sbjct: 121 RRLKLPSDPFNATNRRIEILVQADQG 146


>gi|78047517|ref|YP_363692.1| flagellar motor protein MotD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035947|emb|CAJ23638.1| flagellar motor protein MotB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 324

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G  ++ +P +      +    D                                 
Sbjct: 54  TSAFGGSSNKASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGGARGTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    G++  R++ + G+
Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|330445280|ref|ZP_08308932.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489471|dbj|GAA03429.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 292

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 116/322 (36%), Gaps = 57/322 (17%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD  T+LM FF+++   +  D    K I           N    N +     +  +
Sbjct: 1   MATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGTSVIAQ 60

Query: 87  QNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     I++ + + I  T+ ++D   G +++    QR   N+    + + +    
Sbjct: 61  EFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGDSDRAGGTQRDAGNLTGGQSKKTATENN 120

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            +   + +K ++                                      L + ++  L 
Sbjct: 121 ENEQEELDKMQN-------------------------------------QLKEVLTKALE 143

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             ++D   K +  E     ++I I   R    F + S+   P+   ++++I  ++     
Sbjct: 144 REISD---KVIEIENLGQQVVIRI---REKGAFPEGSAFLQPKFKPLVRQIALLVKDVPG 197

Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           +I + GHT        + R NW LS  RA S  Q + K  G    ++ ++ G A      
Sbjct: 198 IIRVSGHTANDQMDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHTKM-RVVGLADTAPIA 256

Query: 323 ASDP--MNSANRRIDILVEDRQ 342
            +      + NRR++I +   +
Sbjct: 257 DNKTKEGRAKNRRVEISIMQGK 278


>gi|316933944|ref|YP_004108926.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601658|gb|ADU44193.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 284

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 114/324 (35%), Gaps = 63/324 (19%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76
           KKKV       +   W + +AD M +L++FF+++   +  D    + +       FG   
Sbjct: 12  KKKVEDGHAVGHG--WFVTFADLMALLVSFFVMLVSFSTQDLRKMQIVAGSMREAFGVQQ 69

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +   G+ +    P +           +  +      + G +     + + E        
Sbjct: 70  NSRFAGVLETDGVPVQGQVKSKRNVAPDQASNTPHLEEAGGSGSAASHAKAEREF----- 124

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                                         + +   ++ LQD+ 
Sbjct: 125 ---------------------------------------------ALASASLRQALQDVP 139

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +             + + V+FE T  G+ + + DQ   PMF   S+IP   T  ++ ++ 
Sbjct: 140 ELTE----------MSRNVIFEETPVGLNLELTDQDGRPMFADGSAIPYERTRKLVARLA 189

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
             L  ++  ISI GHT A+  +    D   LS++RA +  ++L + G+   ++  + G  
Sbjct: 190 APLRATSLRISIVGHTAATLMQVDDDDPLSLSINRANAVREILKQQGLPTSQVLSLVGKG 249

Query: 317 HHRLKIASDPMNSANRRIDILVED 340
                    PM +ANRR+ I +  
Sbjct: 250 DGDPLFPDAPMLAANRRVTITLMR 273


>gi|256829772|ref|YP_003158500.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578948|gb|ACU90084.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 300

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAM-KRKKRLQDLAKKISSTLSGLVADNIVK 213
             L  S  +        +  L PL  E    M    K  +++ K+  + +         +
Sbjct: 68  DGLPPSMSVGAGGQSAADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKE 127

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            ++ +T   G+ I ++     P FD +SS    +   VL+ I + +      I++ GHTD
Sbjct: 128 ELIIDTFDNGVRIQMLYGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTD 187

Query: 274 ASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           A P    +    NW LS DRA SA  +L + G+   R+ +++G+A  +  I  +P +  N
Sbjct: 188 AVPLGGPSSRYTNWELSTDRASSARVILEEFGLDPKRMVRVAGYAATQPLIRENPEDPRN 247

Query: 332 RRIDILVED 340
           RR+ IL+ +
Sbjct: 248 RRVSILLFN 256



 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 27/165 (16%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN---------------- 75
           +WKI YAD +T +MAFFL+MW++N   ++ K+ +  YF  F                   
Sbjct: 24  AWKIAYADLVTAMMAFFLLMWLLNNVSEEKKEQLSIYFKEFSVIDGLPPSMSVGAGGQSA 83

Query: 76  --------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR- 126
                   +M  + G+F E    E   +  +   I+E + +   +L I + +   + Q  
Sbjct: 84  ADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKEELIIDTFDNGVRIQML 143

Query: 127 --LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
               N  F  ++SQ +   +N L   ++  +DL     +E   + 
Sbjct: 144 YGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTDA 188


>gi|188576036|ref|YP_001912965.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520488|gb|ACD58433.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 286

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N  +W I YAD MT+L+AFF+VM+ I++ ++   K + Q        L
Sbjct: 1   MARRRTHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +A  G     +P +      +    D                                 
Sbjct: 54  TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  + S+ +           TD     +      +P   + +    + ++++  + 
Sbjct: 81  -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++S TL+ L+   +         R  + I  ++  +  +F   S+         L  + 
Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            VL  +   + + G+TD  P        NW LS  RA S   +    GV+  R++ + G+
Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246

Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339
              R +   +++   +ANRR+ +++ 
Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272


>gi|285018158|ref|YP_003375869.1| flagellar motor protein [Xanthomonas albilineans GPE PC73]
 gi|283473376|emb|CBA15881.1| probable flagellar motor protein [Xanthomonas albilineans]
          Length = 317

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 119/327 (36%), Gaps = 62/327 (18%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    D   N  +W I YAD MT+L+AFF+VM+ ++  +    + +    N         
Sbjct: 3   RKHFQDEHTNHEAWAIPYADLMTLLLAFFVVMYALSTVNAAKYRVMANAMNAA------- 55

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                        ++Q    + + E   +   D +            L+ N         
Sbjct: 56  ----------FGGTAQTMHPVQVGEQPLQGQSDARATPIQSSPALSILDPNRL------- 98

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                 SL R ++  +D  +    ++ +++                         +A+++
Sbjct: 99  ---PATSLPRPADALRDEQQLRRAQQQLDR-------------------------IAERL 130

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S LS L+   +         R+G+ I  ++  +  +F   S+         L ++ ++L
Sbjct: 131 DSALSPLIQKKL-----ITVHRSGLWIE-VEINSDILFGSGSATLDQSAHATLAQLAQIL 184

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A     + + G+TD +P        NW LS  RA S   +    G+   R+S I G+   
Sbjct: 185 ASVPNGVRVEGYTDNTPIATAQFPSNWELSAARAASVVHLFADQGLQPSRLSMI-GYGQF 243

Query: 319 RLKIASDPMNSA--NRRIDILVEDRQG 343
           R   ++D  +    NRR+ +++    G
Sbjct: 244 RPHASNDTASGRNANRRVVLVILADSG 270


>gi|88799579|ref|ZP_01115155.1| Flagellar motor protein [Reinekea sp. MED297]
 gi|88777664|gb|EAR08863.1| Flagellar motor protein [Reinekea sp. MED297]
          Length = 319

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 123/321 (38%), Gaps = 49/321 (15%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             +    L +W   ++D M +LM FF+++   +  D    K +                 
Sbjct: 8   CPECEPGLPAWMATFSDLMALLMCFFVLLLSFSEMDALKFKRLAGSLR------------ 55

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                              +   I  N V        ++    R E     +        
Sbjct: 56  ---------------NAFGVQAEINANDVPKGTSIIAKEFSPGRPEPTPLNVVRQDTVAD 100

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K+SL    +             ++ +E       ++++ I++ +  + L+D A +I+  
Sbjct: 101 LKDSLEILCQDT----------FTMQEEAQGDQGQMTRQVIISDEAMQELEDEAARIAQA 150

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS  +A+ +++    ET    I+I + +Q     F   S     E + VL K+ E+L  +
Sbjct: 151 LSDEIAEGMLQ---IETVNETIIIRVKEQS----FTGGSDYVADEFLPVLDKVRELLVTT 203

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRL 320
              I + GHTD  P      R+NW LS  RA S  + L +   ++E+R + I G    + 
Sbjct: 204 PGDIWVEGHTDNVPIATSQFRNNWLLSAARALSVAEYLFIAPEMAEERFT-IVGHGSTKP 262

Query: 321 KIASDP--MNSANRRIDILVE 339
             +++     + NRR++I+++
Sbjct: 263 IASNETPEGRAQNRRVEIIIK 283


>gi|192291615|ref|YP_001992220.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192285364|gb|ACF01745.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 285

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 110/321 (34%), Gaps = 61/321 (19%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79
               +  +    W + +AD M +L++FF+++   +  D    + +     + FG    + 
Sbjct: 14  KKKAEEAHATHGWFVTFADLMGLLVSFFVMLVSFSTQDLRKMQIVAGSMRDAFGVQQNSR 73

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+ +    P +           E  +      + G +     + + E           
Sbjct: 74  FAGVIETDGVPVQGKVKSKMNVAPEQASNTPHLEESGGSGSAASHAKAEREF-------- 125

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                                                      + +   ++ LQD+ +  
Sbjct: 126 ------------------------------------------ALASASLRQALQDVPE-- 141

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K V+FE T  G+ + + DQ   PMF   S++P   T  ++ ++   L
Sbjct: 142 --------LAEMSKNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPL 193

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             ++  + I GHT A+  +    D   LS++RA +  +VL + G+   ++  + G     
Sbjct: 194 RATSLRVIIVGHTAATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGE 253

Query: 320 LKIASDPMNSANRRIDILVED 340
                 P  +ANRR+ I +  
Sbjct: 254 PLFPDAPALAANRRVTITLMR 274


>gi|238790287|ref|ZP_04634061.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii
           ATCC 33641]
 gi|238721637|gb|EEQ13303.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii
           ATCC 33641]
          Length = 241

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 4/202 (1%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             NS +   +    +      +++ +        P    + +  K ++ +++L++ I   
Sbjct: 19  PSNSKSGGGKFSDSIDGQEQAKETKSNLAVEVPEPEQSLEDVVDKSRQEMEELSRIIMQI 78

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
            S   A      +  E    G+ I I D +   MF +SS++  P    +L ++       
Sbjct: 79  TSAYDAQ---SNLHMEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFSRLLGELAPAFNEM 135

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I I GHTDAS +R+    +NW LS +RA  A++ L+K G+++ R+ +I+   H  L 
Sbjct: 136 DNKIIITGHTDASRYRDQELYNNWNLSGERALMAHKALVKGGLADGRVLQINAMGHQMLL 195

Query: 322 IASDPMNSANRRIDILVEDRQG 343
             ++P+ + NRRI+I++  +  
Sbjct: 196 HETEPLAAKNRRIEIMILTKTA 217


>gi|315180456|gb|ADT87370.1| chemotaxis LafU protein [Vibrio furnissii NCTC 11218]
          Length = 324

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            +   + L+  ++ I   ++ L   +    V  + T  G+ I I D    PMF++  S  
Sbjct: 109 EVDTHQELELFSRLIEDQVNEL---DGAGSVNVQITPQGLKIIISDSDKGPMFNRGGSSM 165

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L  +  V +     I + GHTDAS FR  +  NW LS +RA SA   L   GV
Sbjct: 166 TPYYQDLLLNLAPVFSRVENAIIVTGHTDASRFRGTSMTNWELSSNRANSARYFLNSGGV 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              +I ++SG A     +  +P +  NRRI+I +  
Sbjct: 226 PRAQIFQVSGMAESAPLLPENPKSGQNRRIEIFLLT 261



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 1/170 (0%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             D   IIKKK     +  + G WK+  AD M  + A FL++W++   DD+    + QYF
Sbjct: 2   SQDGVTIIKKKKRGGHSGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   T S         P +  Q        E        L  G  +  ++ +    
Sbjct: 62  QTGEVQAHTLSVDALGNSISPIKLPQIATAHIDAEFDRMRDASLIEGEVDTHQELELFSR 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            I    N        N +    +  K +   +D     N+  +   P   
Sbjct: 122 LIEDQVNELDGAGSVN-VQITPQGLKIIISDSDKGPMFNRGGSSMTPYYQ 170


>gi|260768753|ref|ZP_05877687.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
 gi|260616783|gb|EEX41968.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972]
          Length = 324

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            +   + L+  ++ I   ++ L   +    V  + T  G+ I I D    PMF++  S  
Sbjct: 109 EVDTHQELELFSRLIEDQVNEL---DGAGSVNVQITPQGLKIIISDSDKGPMFNRGGSSM 165

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L  +  V +     I + GHTDAS FR  +  NW LS +RA SA   L   GV
Sbjct: 166 TPYYQDLLLNLAPVFSRVENAIIVTGHTDASRFRGTSMTNWELSSNRANSARYFLNSGGV 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              +I ++SG A     +  +P +  NRRI+I +  
Sbjct: 226 PRAQIFQVSGMAESAPLLPENPKSGQNRRIEIFLLT 261



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 1/170 (0%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
             D   IIKKK        + G WK+  AD M  + A FL++W++   DD+    + QYF
Sbjct: 2   SQDGVTIIKKKKRGGHGGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   T S         P +  Q        E        L  G  +  ++ +    
Sbjct: 62  QTGEVQAHTLSVDALGNSISPIKLPQIATAHIDAEFDRIRDASLIEGEVDTHQELELFSR 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            I    N        N +    +  K +   +D     N+  +   P   
Sbjct: 122 LIEDQVNELDGAGSVN-VQITPQGLKIIISDSDKGPMFNRGGSSMTPYYQ 170


>gi|254473486|ref|ZP_05086883.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062]
 gi|211957602|gb|EEA92805.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062]
          Length = 573

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 22/292 (7%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST----------NQ 120
           P      +A   +    + P+   +   +  I + + +   D                 +
Sbjct: 285 PAVAGEASAESSVIVIGDAPDGEGEKLAEGEILKQLAQTQADEAGEDAVMTRLVFAEVKK 344

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
            +   +++         +  E  K  +        +           + E    +P    
Sbjct: 345 GEAAAKVDEKDVPELVEETEEALKIEIVEAEPTPAEPVSEPIEVAQTDPETLPMVPAAKP 404

Query: 181 EKILAMKR---------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
            +                K+L  +A  + + L GL        + F  +R G+LI I+D 
Sbjct: 405 TEAAQGAESGDDEDDEGDKQLVSIANSVGAALDGLKTGA---SIEFTHSRDGVLIRIMDN 461

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            +  MF   SS P P+ +  ++KI +VL      I IRGHTDA PF++   DNWRLS  R
Sbjct: 462 DDFGMFAVGSSEPHPDVVKAMEKIAKVLEEENGEIVIRGHTDARPFKSKRNDNWRLSTAR 521

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           A+ AY +L++ G+ E+RI  I G+A  RLK   +P    NRRI+I++   Q 
Sbjct: 522 AHMAYFMLVRGGLDENRIVGIEGYADRRLKDVEEPYAPQNRRIEIMLMKGQA 573



 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 4/148 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E  + II++++ +   T    G WKI YADF T +MAFFL+MW++NA+D+ +++ I  YF
Sbjct: 4   EPQELIIVRRRNSDMITTPKSGVWKIAYADFATAMMAFFLLMWLVNASDEASQRGIASYF 63

Query: 70  NPFG-KNLMTASKGIFDEQNPPERSSQNKI---DLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           NP    +   + KGI D +  P  +  ++       I    T+       G  ++ +   
Sbjct: 64  NPIKLVDSTASPKGIRDPEETPSPTDSDEGVDNGKPIGAGGTEKQGPTSGGGADKAEPIS 123

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEK 153
             +           +E      T  S +
Sbjct: 124 DRDTGENSTFAGANAEDGGVKATSVSNR 151


>gi|182679602|ref|YP_001833748.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635485|gb|ACB96259.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 416

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 9/275 (3%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                 +L  +   + ++     R     +  +       +  D+K    +         
Sbjct: 149 LKAPASDLQASDAEVENKGADVYRDPFAPLMPAPFASDETDPADVKTTGMS-GVTVDHAS 207

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            N   + ++  S      L + + +G +  K        + + +      SKE +  + R
Sbjct: 208 ANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQLQNGETSSQLSVTPKEDSKELVAELNR 267

Query: 189 -KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            K  L  + KKIS+  S  +       +  E+T  G+L+++ D     MF   SS P  +
Sbjct: 268 IKSELNSVQKKISAAPSTPI-------IEVESTSEGVLLNLTDDVTYSMFAVGSSEPQKQ 320

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           T+ +++K+  +L   T  + IRG+TD  P+++   DNWRLS  RA  A  +L++ G+   
Sbjct: 321 TVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQYMLIRGGLDPK 380

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           R+  I G+A   LK + DP  S NRRI+ILV   +
Sbjct: 381 RVEHIEGYADRHLKNSEDPNASVNRRIEILVRKEK 415



 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++ +++ +IIK++V+  +  ++ G+WKI +ADFMT LMA FLV+W+IN+ ++ TK +I +
Sbjct: 2   SENHNEIVIIKRRVS-HEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR 60

Query: 68  YFNPFGKNLMTASKGIFDEQNP-----PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           YFNP     MT  +  F   +       E  +++  +   +++   +          Q K
Sbjct: 61  YFNPIKLVDMTPMQKGFRNPSEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSK 120

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +  E+ +F    +  +E    +L    +      +++D E      + Y  P
Sbjct: 121 LAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASDAEVENKGADVYRDP 174


>gi|94970509|ref|YP_592557.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552559|gb|ABF42483.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 264

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            K  + +L +++   +  +   + + K +    T  G+ I +++      FD  S+ P  
Sbjct: 83  TKDNMPELKEQLQRAIRKMNNFEQLKKQIEITVTSEGLRIELLESAAGTFFDSGSARPND 142

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVS 305
               +L+ +   L +    ISI GHTD+ PF  N +  NW LS DRA +A +++  SGV 
Sbjct: 143 SGKELLEMLAHELQNLPNTISIEGHTDSKPFVGNGSYSNWELSADRANAARRLMQDSGVR 202

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            +++S++ GFA   L+    P + +NRRI ILV+
Sbjct: 203 GNQVSQVRGFADQNLRKKDAPEDPSNRRITILVQ 236



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MA F+V+W++N T    K+AI  YF                      
Sbjct: 23  AWKVAYADFVTAMMALFIVLWLMN-TSKPVKEAISGYFKDPSGTAKKTGSAQSGTGENFT 81

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            +  N  +L          ++       Q +     E     L  S       +   R +
Sbjct: 82  ITKDNMPELKEQLQRAIRKMNNFEQLKKQIEITVTSEGLRIELLESAAGTFFDSGSARPN 141

Query: 152 EKGKDLCK 159
           + GK+L +
Sbjct: 142 DSGKELLE 149


>gi|190574215|ref|YP_001972060.1| flagellar motor protein MotD [Stenotrophomonas maltophilia K279a]
 gi|190012137|emb|CAQ45760.1| putative chemotaxis protein MotB [Stenotrophomonas maltophilia
           K279a]
          Length = 338

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   ++  N+  +W I YAD MT+L+AFF+VM+ I++ ++   + +          L
Sbjct: 1   MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G     NP +                                      N      
Sbjct: 53  TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              S     S T+             L  S+  +    +   ++E+I   +R+  L  +A
Sbjct: 77  GWDSPSVIKSGTKIGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LNSIA 134

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++++ L+ L+   +   +    T   I + I    +  +F   S+         L  + 
Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           EVL      + + GHTD  P        NW LS  RA S   +    GV   R++ + G+
Sbjct: 189 EVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247

Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339
              R +  +D     + NRR+ +++ 
Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273


>gi|254523338|ref|ZP_05135393.1| MotB protein [Stenotrophomonas sp. SKA14]
 gi|219720929|gb|EED39454.1| MotB protein [Stenotrophomonas sp. SKA14]
          Length = 338

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   ++  N+  +W I YAD MT+L+AFF+VM+ I++ ++   + +          L
Sbjct: 1   MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G     NP +                                      N      
Sbjct: 53  TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              S     S T+             L  S+  +    +   ++E+I   +R+  L  +A
Sbjct: 77  GWDSPSVIKSGTKIGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LNSIA 134

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++++ L+ L+   +   +    T   I + I    +  +F   S+         L  + 
Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +VL      + + GHTD  P        NW LS  RA S   +    GV   R++ + G+
Sbjct: 189 DVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247

Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339
              R +  +D     + NRR+ +++ 
Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273


>gi|194365634|ref|YP_002028244.1| flagellar motor protein MotD [Stenotrophomonas maltophilia R551-3]
 gi|194348438|gb|ACF51561.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 338

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   ++  N+  +W I YAD MT+L+AFF+VM+ I++ ++   + +          L
Sbjct: 1   MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G     NP +                                      N      
Sbjct: 53  TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              S     S T+             L  S+  +    +   ++E+I   +R+  L  +A
Sbjct: 77  GWDSPSVIKSGTKVGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LSSIA 134

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++++ L+ L+   +   +    T   I + I    +  +F   S+         L  + 
Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           EVL      + + GHTD  P        NW LS  RA S   +    GV   R++ + G+
Sbjct: 189 EVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247

Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339
              R +  +D     + NRR+ +++ 
Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273


>gi|90422620|ref|YP_530990.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisB18]
 gi|90104634|gb|ABD86671.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 423

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 2/266 (0%)

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           G     A +  FD  + P   +    D ++      N    +  +   + Q +R      
Sbjct: 155 GMKGGEAYRDPFDPISWPMAQTSPLDDKALGRKEAGNLPFDEAAAALSEGQGRRPSQGTP 214

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             + + Q      +    SE  +D  +   L      +        +  +          
Sbjct: 215 DATAAPQDAEPPKAAPASSEPQQDRPRPVGLFADDATKTGAPGNRPAGARGDTTPAANAA 274

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L   I++ L+ L A   V  V    T  G+LIS+ D  N  MF   S+ P P  +  L
Sbjct: 275 GKLQATITAALATLGAARPVTEV--RETTEGLLISLTDDVNYGMFATGSAAPSPGLVRAL 332

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            KI  ++A +   + +RGHTD   +R+   DNWRLS  RA+ AY +L++ G+   RI +I
Sbjct: 333 DKITPLIAQNRGQMIVRGHTDNRAYRSAEYDNWRLSTARAHMAYYMLIRGGLDAGRIERI 392

Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338
            G+A  R K  +DP  + NRRI++L+
Sbjct: 393 EGYADRRPKDPNDPSAAPNRRIELLI 418



 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 7/187 (3%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
            Q+  + III+++ ++D    N G WKI YADFMT +MAFFLVMW+INAT+ +T++++  
Sbjct: 3   EQDRPELIIIRRRNSLDVEEKN-GVWKIAYADFMTAMMAFFLVMWLINATNPETRESVAA 61

Query: 68  YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKKQYQ 125
           YFNP    +     KGI D    P R    K D   +E       +  +     Q +Q  
Sbjct: 62  YFNPIKLTDSTPDRKGIHD----PRRVDPGKADEGDNERPHPEPDNAAQPAPRQQPEQSH 117

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
             E  +F    +  SE                    D  K      + F P        +
Sbjct: 118 PDEAALFRDPYAVLSEIAGGPPRAAQAGSAPEATRKDGMKGGEAYRDPFDPISWPMAQTS 177

Query: 186 MKRKKRL 192
               K L
Sbjct: 178 PLDDKAL 184


>gi|294339857|emb|CAZ88220.1| putative outer membrane OmpA/MotB protein [Thiomonas sp. 3As]
          Length = 293

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 114/324 (35%), Gaps = 76/324 (23%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N   W + YADF+T+L AFF+VM+ I++ ++   K +              
Sbjct: 3   RKKAHEEHENHERWLVSYADFITLLFAFFVVMYSISSLNEGKYKVL-------------- 48

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                         SQ  I     +  T N V +           Q   +    +     
Sbjct: 49  --------------SQTMIAAFTGQPTTPNPVQVG----------QPFNSMPSAIDLPPI 84

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +  K  +      G                              A + +K LQ +A+KI
Sbjct: 85  PKQQKPEIIEPGRGGPG----------------------------AKEVQKTLQGVAEKI 116

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L+  +       V    T  G++I I D     +F    +   P+   +L +I  VL
Sbjct: 117 QTLLASAIRKG---DVRVRMTPLGVVIDIHDT---VLFASGQAALTPQAQDLLNQIAGVL 170

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I + G TD  P        NW LS  RA S  ++ ++ GV  +++   +G+  +
Sbjct: 171 QGVAYPIQVNGFTDDRPINTPQFGSNWALSSARAVSVVEMFIEQGVKPEQLVA-AGYGQY 229

Query: 319 RLKIASDP--MNSANRRIDILVED 340
               ++D     +ANRR+ +++  
Sbjct: 230 HPVESNDTAKGRAANRRVSVVIVS 253


>gi|110632645|ref|YP_672853.1| flagellar motor protein MotB [Mesorhizobium sp. BNC1]
 gi|110283629|gb|ABG61688.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 452

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 114/278 (41%), Gaps = 4/278 (1%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           E Y +PF  +  +    +       +     +     D    +       G   +++   
Sbjct: 178 EAYRDPFAPDFWSQQVAMPRIGVEGDPDEAREQPSGADIKAEQTGQHQLAGIEPEQETSD 237

Query: 126 RLE-NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
            L    +  +      E  + +     E G       +   S         P     +  
Sbjct: 238 ALSLKRVPQVEPLAPEEKNEPATEGVPEDGVQSASPGNESASEEVSATAGEPDAPANEKA 297

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               +     +   ++  L+G   + +   V       G+LIS+ D     MF   S++P
Sbjct: 298 NEAHENAAAGIRAALAQALNG---EGLASSVTVSAGEEGVLISVTDDIRNGMFPVGSAVP 354

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
               +  ++KIG+ LA     I I GHTDA PFR+   DNWRLS  RA++A  +L++ G+
Sbjct: 355 ERALVGAMEKIGKTLAGQPGTIRIHGHTDARPFRSDTYDNWRLSTARAHAAQYMLIRGGL 414

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            E RI++++GFA  +LK    P+  ANRRI+IL+E  Q
Sbjct: 415 DETRITEVAGFADRKLKEPESPLADANRRIEILLEVPQ 452



 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 11/191 (5%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
             +++   + II+++    +D+ ++ G WKI +ADFMT +M FFLVMW+INA ++ T+ A
Sbjct: 4   ATEDERQPEIIIVRRGGDDEDSEHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTRAA 63

Query: 65  IEQYFNPFG-KNLMTASKGIFDEQNPPE------RSSQNKIDLSIDEHITKNSVDLK--- 114
           +  YFNP    +  T  KG+ +    P+      +S ++    S +   T    D +   
Sbjct: 64  LASYFNPVKLIDRNTNRKGLEEVGQGPQVSTEADQSEKSTDQPSGENDKTSGPADFQNAT 123

Query: 115 -IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
            +  T +        N    L+          +++R  E G  +   +          + 
Sbjct: 124 DLADTRKYSDQNFFSNPYAVLAEIAADVGQDQNVSRKGEGGVQIAGPSSGASGGEAYRDP 183

Query: 174 FLPPLSKEKIL 184
           F P    +++ 
Sbjct: 184 FAPDFWSQQVA 194


>gi|313672698|ref|YP_004050809.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939454|gb|ADR18646.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 276

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           +   G  +   T      +K+    +    + +I A   +   + + + +   +   +++
Sbjct: 69  EKAGGSIMEGGTGKPFEADKKGQAQIVEKIEVEIAATATENNGEKVKESLMGVVKTQLSE 128

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
                ++  TT  GI I +ID+   P+F   S+        VL+ +   L   +  I I 
Sbjct: 129 -FSDQIMVSTTPEGIRIDVIDKTGNPIFSSGSASLNTNGKAVLKVLANTLNELSNKIVIE 187

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA  +R     NW LS+ RA +A   L+ +G   ++IS ++G+A  R  +  +P + 
Sbjct: 188 GHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSVAGYAATRPIVKDNPNDP 247

Query: 330 ANRRIDILVEDRQG 343
            NRRI  L+   + 
Sbjct: 248 MNRRISFLILYDKA 261



 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 92/244 (37%), Gaps = 18/244 (7%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           +   ++ G+WKI YADF+T +MAFFLVMW++N T ++ +  I  YF  F          +
Sbjct: 17  EGGGHHGGAWKIAYADFVTAMMAFFLVMWLLNMTSEEKRAKIAMYFRTFSIFEKAGGSIM 76

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
                 P  + +      +++      ++++I +T  +   ++++ ++  +  +Q SE  
Sbjct: 77  EGGTGKPFEADKKGQAQIVEK------IEVEIAATATENNGEKVKESLMGVVKTQLSEFS 130

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
              +   + +G  +         I           S    L    K  L+ LA  ++   
Sbjct: 131 DQIMVSTTPEGIRIDVIDKTGNPIFS---------SGSASLNTNGKAVLKVLANTLNELS 181

Query: 204 SGLVADNIVKGVLFETTRTG---ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + +V +     + +   + G   + I   +     +           ++        ++ 
Sbjct: 182 NKIVIEGHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSVAGYAATRPIVK 241

Query: 261 HSTE 264
            +  
Sbjct: 242 DNPN 245


>gi|90022860|ref|YP_528687.1| flagellar motor protein MotB [Saccharophagus degradans 2-40]
 gi|89952460|gb|ABD82475.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 329

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 119/328 (36%), Gaps = 59/328 (17%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           D P  L  W   +AD M++LM FF+++   +  D    K +                  F
Sbjct: 10  DCPAGLPPWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSM-----------AQAF 58

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
             QN    +   K    I +  +    +                                
Sbjct: 59  GVQNKLNVTDIPKGTSIIAQEFSPGRPEPTP----------------------------- 89

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
             +    +K  DL + + LE    +E +        +   A+K K++L++L +       
Sbjct: 90  --INEIWQKTDDLTEMS-LEVQCAEEYDIEQGTEGYDAGAALKVKQKLEELLEDTQDD-- 144

Query: 205 GLVADNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              A  +   +  + T   I I       II  R    F   S+    E   VL+++  V
Sbjct: 145 ---AYELAAAMHEQITEGQIEIETRGRMIIIRIREKGSFVSGSADLSVELKDVLKEVKSV 201

Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           LA     I ++GHTD  P R+     NW LS  R+ S    LM  G   +R  +++G+A 
Sbjct: 202 LALRQGKIEVQGHTDNVPIRSARFGSNWALSSARSVSVAHELMAGGDIAERRFEVAGYAD 261

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343
               + +D     + NRR++IL+  +QG
Sbjct: 262 TMPIVPNDSAENRAINRRVEILI--KQG 287


>gi|292489120|ref|YP_003532007.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430]
 gi|292900239|ref|YP_003539608.1| motility protein B [Erwinia amylovora ATCC 49946]
 gi|291200087|emb|CBJ47213.1| chemotaxis protein (motility protein B) [Erwinia amylovora ATCC
           49946]
 gi|291554554|emb|CBA22155.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora
           CFBP1430]
 gi|312173278|emb|CBX81533.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora
           ATCC BAA-2158]
          Length = 302

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMF 237
             +K+   K  + L+ +  ++ + +       N    ++   T  G++I I D +  PMF
Sbjct: 100 QVDKLDKFKNVESLKKVKTRLETMIESDPRLSNFKSNLMLTLTDDGLMIQITDSQERPMF 159

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSA 295
              S  P      +LQ +  +L      +S+ GHTD+  +   +    NW LS  RA +A
Sbjct: 160 KTGSEAPESYMNGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWELSTGRANAA 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            +VL+ +G+ +DRI ++ G             N  NRRI +LV  +
Sbjct: 220 RRVLINAGLDDDRILRVIGTGSRMGLADISADNPMNRRISVLVLSK 265



 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            II ++K       ++ G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF    
Sbjct: 6   PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           K  M         ++       + I       + K+ VD      N +   +        
Sbjct: 66  KPTMGQGNKTSFSESIIPGGGDDVIRQEG--EVYKHQVDKLDKFKNVESLKKVKTRLETM 123

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           + +  +  + K++L         + + TD ++    +     P      IL     + L 
Sbjct: 124 IESDPRLSNFKSNLMLTLTDDGLMIQITDSQERPMFKTGSEAPESYMNGIL-----QALV 178

Query: 194 DLAKKISSTLS 204
            L K++ ++LS
Sbjct: 179 PLLKELPNSLS 189


>gi|119385422|ref|YP_916478.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222]
 gi|119375189|gb|ABL70782.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222]
          Length = 266

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 79/332 (23%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            IIIKK     D  ++ G+WK+ YADF+T +MA F ++  +     + ++          
Sbjct: 9   PIIIKKVQGGGDAGHHGGAWKVAYADFVTAMMA-FFLLMWLLNATTEKQR---------- 57

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                  +G+ D  NP    S            T++  D   G   Q  +          
Sbjct: 58  -------QGLADYFNPTLIQS------------TRSGHDGPFGGEVQDAE---------- 88

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            ++ + +   ++SL   ++ G+D                                    +
Sbjct: 89  TNSGKGAGASRDSLAARTQDGRDTG---------------------------------FE 115

Query: 194 DLAKKISSTLSGLVAD-----NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           D+A+ I   L+G  A+     N+++ V+   T  G++I + D  + P+F   S+ P P  
Sbjct: 116 DMARHIQDQLTGSGAESLQKVNLLRHVVTRMTDEGLVIELTDLMDEPLFVGDSAQPTPAM 175

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +   +  VL      I++ GH  A P   I    W LS  RA++   +L  +G    R
Sbjct: 176 KELAGILSGVLGRVRNEIALTGHVRAYPEMLIQSPVWALSDARAHALRNLLEGAGFDTTR 235

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I +++ FA  R +   +PM+  N RI++++  
Sbjct: 236 IQRVTAFADRRNRSV-NPMDPDNNRIEVILLR 266


>gi|24375768|ref|NP_719811.1| flagellar motor protein MotB [Shewanella oneidensis MR-1]
 gi|24350713|gb|AAN57255.1|AE015861_7 chemotaxis motB protein [Shewanella oneidensis MR-1]
          Length = 275

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 65/322 (20%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    D P N   W I YADFMT+L A F+V++    +D +  K + +            
Sbjct: 2   KKKKVDPPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVE------------ 49

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+ D  +     S   ++       +    +    + + + +                
Sbjct: 50  --GLIDSLSKIGLISTPAVNALAPGGTSILEPNTVTSAVDAEPKLIE------------- 94

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                 +    SE   DL  +                          K    ++   + I
Sbjct: 95  ---TATTAPSTSESNNDLTNA--------------------------KSNDTIRKYKEII 125

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           S+ L   + +   + V  +     ++I I D  N   F   S+   P+ I ++ KIGEV+
Sbjct: 126 SAKLKNEIEN---QEVEIDEVSDNLIIRIGD--NNTFFASGSAFIQPKFIPLIDKIGEVI 180

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
           A     + I GHTDA+    I  DNW LS  RA +  +++ K+ GV+  RI  + G A  
Sbjct: 181 ASVPGRVVIAGHTDATLPMEIYADNWDLSSLRATAVVRIMTKNKGVNPSRII-VQGLADT 239

Query: 319 RLKIASDP--MNSANRRIDILV 338
           + +  +D       NRRI+I++
Sbjct: 240 QPRFQNDTPEHRQKNRRIEIIL 261


>gi|330830900|ref|YP_004393852.1| sodium-driven polar flagellar protein [Aeromonas veronii B565]
 gi|328806036|gb|AEB51235.1| Sodium-driven polar flagellar protein [Aeromonas veronii B565]
          Length = 283

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 114/322 (35%), Gaps = 65/322 (20%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++      D    K I           N      +     +  +
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMDKAFGVQNILEVKDIPKGTSVIAQ 60

Query: 87  QNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  P R     ID  + + I  T+  ++   G ++Q     + +        +Q      
Sbjct: 61  EFRPGRPEPTPIDTVMQQTIDLTQTELEFLPGESDQAGGQDKSDGKQTGGDTAQD----- 115

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
                                                   A K +++   LAK ++  + 
Sbjct: 116 ----------------------------------------AKKAQEQSNTLAKALAEQMK 135

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             + D  ++    E     I+I I   R    F   S+   P+   V++K+  +L     
Sbjct: 136 DQIQDGAIE---IEALGQQIIIRI---REKASFPAGSAFLQPQFWPVIRKVATLLKDVPG 189

Query: 265 VISIRGHTDASPFRN-IARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKI 322
            I+I GHTD     + + + NW LS  RA +  +Q+L   G  + R+  + G A  +  +
Sbjct: 190 EITISGHTDNVATEDELFQSNWELSSQRAVAVAHQMLKVPGFDQGRLV-VQGMADSQPLV 248

Query: 323 AS-DPMNSA-NRRIDILVEDRQ 342
            +  P N   NRR++I +   +
Sbjct: 249 PNTTPENRRMNRRVEIAIMQGK 270


>gi|225874275|ref|YP_002755734.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
 gi|225793995|gb|ACO34085.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
          Length = 270

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 188 RKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +K+ ++++  +IS  + + +    +   V    T  G+ I +++ +    FD  SS    
Sbjct: 83  KKQDIRNIKTQISEAMHAQIQLKALQNHVNMVVTPEGLRIELLEAKGGTFFDSGSSKLSA 142

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305
               +L+ + + L      I+I G+TDA P+       NW LS DRA +A +++  SG+ 
Sbjct: 143 GGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPGKDGYTNWDLSADRANAARRLMQASGLH 202

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             +++++ G+    L++ + P +  NRRI I+V
Sbjct: 203 AGQVAEVRGYGDQNLRLPNKPFDPTNRRITIVV 235



 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 21/237 (8%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
              + II+ +K  +    ++ G+WK+ YADF+T +M+ F+V+W++N +    KK I  YF
Sbjct: 2   SPHRPIIVIRK-KVSHGGHHGGAWKVAYADFVTAMMSLFIVLWLMNTSTP-IKKIIAGYF 59

Query: 70  NPFGKNLMTAS---KGIFDE---QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
                N         G  D+   +    R+ + +I  ++   I   ++   +      + 
Sbjct: 60  RDPKSNSALTGNDHNGATDDLTWKKQDIRNIKTQISEAMHAQIQLKALQNHVNMVVTPEG 119

Query: 124 YQ-----RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE-----KSINKEENY 173
            +           F   +S+ S   K  L   +++   +     +E     K    ++ Y
Sbjct: 120 LRIELLEAKGGTFFDSGSSKLSAGGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPGKDGY 179

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISII 229
               LS ++  A +R  +   L     + + G    N+ +    F+ T     I+I+
Sbjct: 180 TNWDLSADRANAARRLMQASGLHAGQVAEVRGYGDQNLRLPNKPFDPTNR--RITIV 234


>gi|289807272|ref|ZP_06537901.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 135

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           +   +  +  + G+ I IID +N PMF   S+   P    +L+ I  VL      IS+ G
Sbjct: 12  LRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAG 71

Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           HTD  P+ N      NW LS DRA ++ + L+  G+   ++ ++ G A         P +
Sbjct: 72  HTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDD 131

Query: 329 SANR 332
           + NR
Sbjct: 132 AINR 135


>gi|300024596|ref|YP_003757207.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526417|gb|ADJ24886.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 424

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 8/274 (2%)

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L      + D+     ++SQ+    S  +    +  D     + +    QR  +     
Sbjct: 148 ALFDNPGQLLDKLADEAKASQSMTAASPLDSSISDPFDRADRRSGKSSAAQRSASQPNPA 207

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK---- 190
             +  +   K S      +GKD  K+    ++ + ++         +   A   K     
Sbjct: 208 PAAPPAATAKASPPPSGVEGKDAAKNARALEAQDTKQAATALNAKDQNHAANAPKPSDAA 267

Query: 191 --RLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
               +  AKK+   +S  +A        +  + T  G+L+S++D  +  MF+  S+ P P
Sbjct: 268 DVADEAKAKKLQDDISSALAKGSRAAPEIEVKATSEGLLVSLLDGADFGMFEVGSAKPRP 327

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
             ++ + K+G+VL      I +RGHTD+  ++N   DNWRLS  RA  AY +L++ G++E
Sbjct: 328 ALVLAMSKVGDVLKSLPGSIVVRGHTDSRAYKNGNYDNWRLSAARAQMAYYMLVRGGIAE 387

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            R + I G A    KI S+     NRRIDIL+++
Sbjct: 388 TRFAAIEGRADRDPKIPSNREAPENRRIDILIKE 421



 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 9/199 (4%)

Query: 3   SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62
           S+G ++  +   +I++++    D  ++ G WKI YADFMT +MAFFLVMW+INA D  T 
Sbjct: 2   SNGQEDVSSQPLVIVRRR-RSHDEEHHGGVWKIAYADFMTAMMAFFLVMWLINAADKKTI 60

Query: 63  KAIEQYFNPF-GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI-------TKNSVDLK 114
             +  YFNP    +   A KG+ D      + ++ K +  + +H           +    
Sbjct: 61  VQVAAYFNPMRLTDRFEAPKGLEDLNEIDAKQNEEKSEKGLSQHPDQAQKLSAPKASKAN 120

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
           IG    ++  +R  +     + +Q+ E   ++  +  +K  D  K++    + +  ++  
Sbjct: 121 IGEAMDEEAQKRSASAGGKSAEAQKEEALFDNPGQLLDKLADEAKASQSMTAASPLDSSI 180

Query: 175 LPPLSKEKILAMKRKKRLQ 193
             P  +    + K     +
Sbjct: 181 SDPFDRADRRSGKSSAAQR 199


>gi|255744684|ref|ZP_05418635.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101]
 gi|262161183|ref|ZP_06030294.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1]
 gi|262168686|ref|ZP_06036381.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27]
 gi|255737715|gb|EET93109.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101]
 gi|262022804|gb|EEY41510.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27]
 gi|262028933|gb|EEY47586.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1]
          Length = 294

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 113/311 (36%), Gaps = 47/311 (15%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDEQNPPERS 93
           M++LM FF+++   +  D    K I           N      +     I  ++  P R 
Sbjct: 1   MSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFRPGRP 60

Query: 94  SQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
               ID+ + +   IT+ +++ + G +++    QR    +    +++ S     +   + 
Sbjct: 61  EPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQDNQNTQSE- 119

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
                                        ++  A    ++++ +A+ I   LS  +    
Sbjct: 120 ----------------------------MQQQQAQAMSEQMETVAESIKKALSREIEQGA 151

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              +  E     I I I   R    F + S+   P+   ++++I E++      + + GH
Sbjct: 152 ---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGH 205

Query: 272 TDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD       + R NW LS  RA S  Q + K    +    ++ G A  +    +D     
Sbjct: 206 TDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQR 265

Query: 331 --NRRIDILVE 339
             NRR++I + 
Sbjct: 266 ATNRRVEISIL 276


>gi|218658934|ref|ZP_03514864.1| flagellar motor protein MotB [Rhizobium etli IE4771]
          Length = 151

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K       +I+  + G VA  + +G+       G+L+SI DQ +  MF+  S++P  E +
Sbjct: 1   KEADAFQHQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMV 59

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + +++IG +L      ++IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RI
Sbjct: 60  LAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRI 119

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           S++SGFA  RLK+ ++P N+ANRRI+ILV+
Sbjct: 120 SQVSGFADRRLKLPAEPFNAANRRIEILVQ 149


>gi|158422249|ref|YP_001523541.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
 gi|158329138|dbj|BAF86623.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
          Length = 472

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 3/270 (1%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
               +     G F                +       N+    +G         + + + 
Sbjct: 199 PDAAVSARGGGDFATDGDVFSPQPQDAAEAQASAQQANAQATAVGGNGAPAAAPKADPSK 258

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK---R 188
              + +  S    +    +  KG     +     +   ++             A      
Sbjct: 259 LDATKAAPSAGKGDMAQGELAKGDAANGAQAKGAAAKGDQAKGEQAKGDANAGAATFKID 318

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +     L  +  + +   +       V    T+ GI++S+ D  N  MF   S++P    
Sbjct: 319 QANADKLKTEAVAAVQSNLGSVAAPKVDVRVTKEGIVLSLTDDINYSMFPVGSAVPDGRL 378

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +  + KIGE L      + IRG+TD  P+R+   DNWRLS  RA+  Y +L++ G+ E R
Sbjct: 379 VRAMAKIGEALGKRPGEVVIRGYTDGRPYRSDTYDNWRLSTARAHMTYYMLVRGGLQEPR 438

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++ I G+A   LK  ++P  + NRRI+IL+
Sbjct: 439 VAMIEGYADRNLKNKAEPYAAENRRIEILL 468



 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 4/183 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+ + IIIK+    +   +   +WK+ +ADFMT +MAFFL+MW+IN TD D +KAI  YF
Sbjct: 6   EHHELIIIKRHEDEEHEHH-SSAWKVAHADFMTAMMAFFLIMWLINVTDKDVRKAIASYF 64

Query: 70  NPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP      MT  KG+ + ++     +    D       T  +     GS  Q+ +  R  
Sbjct: 65  NPVHLAESMTERKGLNEPEDIKPDGTSADGDQKSALKETAGAG-TGPGSDTQRGKQDRAA 123

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
               Y   S+ +     S     +             + +   + F P   +       R
Sbjct: 124 FQDPYAVLSKLAGEADPSEMSTPDAAVGETGQPG-NSAGDAVRDPFDPVYWQMNQARKMR 182

Query: 189 KKR 191
            ++
Sbjct: 183 TEK 185


>gi|296135687|ref|YP_003642929.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
 gi|295795809|gb|ADG30599.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
          Length = 298

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 114/324 (35%), Gaps = 76/324 (23%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N   W +  ADF+T+L AFF+VM+ I++ ++   K +              
Sbjct: 3   RKKAHEEHENHERWLVSDADFITLLFAFFVVMYSISSLNEGKYKVL-------------- 48

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                         SQ  I     +  T N V +           Q   +    +     
Sbjct: 49  --------------SQTMIAAFTGQPTTPNPVQVG----------QPFNSMPSAIDLPPI 84

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +  K  +      G                              A + +K LQ +A+KI
Sbjct: 85  PKQQKPEIIEPGRGGPG----------------------------AKEVQKTLQGVAEKI 116

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L+  +       V    T  G++I I D     +F    +   P+   +L +I  VL
Sbjct: 117 QTLLASAIRKG---DVRVRMTPLGVVIDIHDT---VLFASGQAALTPQAQDLLNQIAGVL 170

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I + G TD +P        NW LS  RA S  ++ ++ GV  +++   +G+  +
Sbjct: 171 QGVAYPIQVNGFTDTTPIHTAQFPSNWALSAARAVSVVEMFIEQGVKPEQLVA-AGYGQY 229

Query: 319 RLKIASDP--MNSANRRIDILVED 340
               ++D     +ANRR+ +++  
Sbjct: 230 HPVESNDTAKGRAANRRVSVVIVS 253


>gi|86749921|ref|YP_486417.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86572949|gb|ABD07506.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 274

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 116/325 (35%), Gaps = 75/325 (23%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76
           KKK+  + T +    W + +AD M +L+AFF+V+   +  D    + +     + FG   
Sbjct: 12  KKKLDDEHTGHG---WYVSFADLMGLLVAFFVVLVSYSTQDVKKLQIVAGSMRDAFGVQH 68

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G  +    P +    K D         N+   + G      Q +         ++
Sbjct: 69  QARYSGAVETDGTPVQGRVAKTD---------NAALDQAGGAGSSAQAKAEREFALASAS 119

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +Q                                             A++    L +L+
Sbjct: 120 LRQ---------------------------------------------ALQDVPELSELS 134

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K        +V +    G+  E T              PMF   SS+P   T +++ K+ 
Sbjct: 135 K-------NVVFEETPTGLNLELTDQ---------DGRPMFADGSSVPYERTRLLIAKLA 178

Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L  ++  ++I GHT A+    N   D++ LS  RA +  Q+L + G+S +R+  ++G 
Sbjct: 179 APLRATSLRVNIVGHTAATAVPANGDYDSFDLSTGRANAVRQILKREGLSSNRVMSVAGK 238

Query: 316 AHHRLKIASDPMNSANRRIDILVED 340
                     PM +ANRR+ I +  
Sbjct: 239 GDGEPLFPEAPMLAANRRVTISLLR 263


>gi|317121531|ref|YP_004101534.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591511|gb|ADU50807.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 343

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 110/313 (35%), Gaps = 59/313 (18%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YAD +T+L+AFF+VM+ ++  +                                 R
Sbjct: 74  WLLTYADLITLLLAFFVVMYAMSEVNA-------------------------------TR 102

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                  L         ++    G +   ++     N          +    N    ++ 
Sbjct: 103 YRALAASLRAAFATAGEALIDTKGISPDARKVLDGLNQDTGQPFPPSTAPGTNPAPEENP 162

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G+          +    E                  +RL+DL  ++++ L       + 
Sbjct: 163 GGQGEGPGRLPVVTGPPGEE-----------------ERLRDLVDQVNAALR---DAGLG 202

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
                + T  G+ I   DQ     FD   +   PE   +L+++  +LA     I + GHT
Sbjct: 203 GRASAQLTDRGVAIIFEDQ---VFFDLGRADLRPEGRELLRRLAPILARVPGTILVEGHT 259

Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           D  P  +     NW LS  RA +  + L  ++G+   R++  +G+   R +  +  +   
Sbjct: 260 DNLPIHSDRFPSNWELSTARATTVVRFLAEQAGLDPRRLAA-AGYGEWRPRFPNTSEANR 318

Query: 329 SANRRIDILVEDR 341
           + NRR++I+V  +
Sbjct: 319 ARNRRVEIVVLRQ 331


>gi|308273452|emb|CBX30054.1| hypothetical protein N47_D28630 [uncultured Desulfobacterium sp.]
          Length = 307

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 2/173 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILI 226
           ++++   LP             + L+  A+KI+ T+S     N  K  +    T+ G+ I
Sbjct: 78  DEQKPLSLPASPIAVDKRAFEMELLKSEAEKITKTISQTPEFNKFKDKITVTVTQEGMRI 137

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNW 285
            ++++     FD       P+T+ +LQ I +  LA     I I G+TDA P+ +    NW
Sbjct: 138 DLLEESEGLFFDIGKIHIKPDTVKLLQVIAKSHLAKLKNGIIIEGYTDARPYVSSDYTNW 197

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            LS +RA SA +VL +SG+ +D+I ++ GFA  +L++   PM+ +NRR+ IL+
Sbjct: 198 ELSTERANSARKVLEESGLRKDQILEVRGFADRKLRLPDKPMDFSNRRVSILL 250



 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           + E+ Q II+  K       ++ G+WK+ YADF+T +MA F+V+WI+     + K  I  
Sbjct: 2   DDEHIQPIIVV-KKVKGHGGHHGGAWKVAYADFVTAMMALFIVLWIVG-QSKEVKHYIGA 59

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL---SIDEHITKNSVDLKIGSTNQKKQY 124
           YFN  G        G+  ++  P     + I +   + +  + K+  +    + +Q  ++
Sbjct: 60  YFNDPGVFTNGRYGGVLPDEQKPLSLPASPIAVDKRAFEMELLKSEAEKITKTISQTPEF 119

Query: 125 QRLENNIFYLSNSQ 138
            + ++ I      +
Sbjct: 120 NKFKDKITVTVTQE 133


>gi|331006559|ref|ZP_08329851.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330419628|gb|EGG94002.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 325

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 119/321 (37%), Gaps = 54/321 (16%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
            L +W   +AD M++LM FF+++   +  D    K +                       
Sbjct: 13  GLPAWMATFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSMA------------------ 54

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                                      G   Q K     +           +      + 
Sbjct: 55  ------------------------QAFGVQTQLKVTDVPKGTSIIAREFSPAIPEPTPIN 90

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +K  D+ + +   + +  E +     + KE  + +K K++L+DL ++ +   +  +A
Sbjct: 91  EIWQKTADITQMSLEVRQVE-EYDVEAGDIDKEAGVKLKIKQQLEDLIRE-TQNDARELA 148

Query: 209 DNIVKGVL---FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +++ + ++    E    G  I I+  R    F   S I   +   V+  I E +      
Sbjct: 149 NDLREQIVAGEIEIETDGRKI-IVRIREKGSFQSGSHIMNDDYYDVMDDIREAVLTKPGK 207

Query: 266 ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           I ++GHTD  P R+     NW LS  RA S  Q LM   V   R   +SGFA  +  + +
Sbjct: 208 IQVQGHTDNIPIRSARYRSNWELSTARAVSVAQALMDGDVDPRRFE-VSGFADTQSLVDN 266

Query: 325 D--PMNSANRRIDILVEDRQG 343
           +     S NRR++I++  RQG
Sbjct: 267 NSEENRSRNRRVEIVI--RQG 285


>gi|149909329|ref|ZP_01897985.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36]
 gi|149807646|gb|EDM67594.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36]
          Length = 290

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 107/312 (34%), Gaps = 36/312 (11%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
              +AD M++LM FF+++   +  D    K I                  F  QN  E  
Sbjct: 1   MGTFADLMSLLMCFFVLLLSFSEMDVVKFKQIAGSMQHA-----------FGVQNQIEVK 49

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           +  K    I +       D     T  +      E  + +     Q+   KN L  DS  
Sbjct: 50  NIPKGTTVIAQEFRPGRPDPTPIETIMQHTIDNSEAELDFKDGEDQNAGGKNKLAEDSNG 109

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           GK    ST         E                  +   +L K ++  L   +      
Sbjct: 110 GKSPETSTRDNTPTQNIEVT----------------EDTSELVKALAEALKEEIDSG--- 150

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           GV  E     I+I I        F   S+   P    V+QK+ ++LA    +I+I GHT 
Sbjct: 151 GVEVENLGQQIIIRI---NEKGSFPSGSAFLQPRFRPVIQKVAQLLATIPGIITIAGHTG 207

Query: 274 ASPFRN-IARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
                + + R  W LS  RA S    +L     +E+R+  + G A  +     +     N
Sbjct: 208 KEQLHSELYRSKWDLSSQRAVSVAHEMLKVKEFTENRLI-VQGMADTQPLTDDENELRRN 266

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 267 RRVEISIMQGKA 278


>gi|303248999|ref|ZP_07335244.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489585|gb|EFL49525.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 317

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 116/317 (36%), Gaps = 39/317 (12%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--PP 90
           W I  AD MT+L+ FFL++  ++  D +  + +             A K    E      
Sbjct: 26  WPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQKAMVTEKPAPKPKKAEPKPVVK 85

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           + +        +++     S       T++       E      + ++ +   +     +
Sbjct: 86  KTTPPKPQPKPVEQPAMVRSKVSHTTLTSEPVAPLAQEKPKPEPTPAKPAAPTEQPKPAE 145

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           S K +    + + E++                      +K L+D+ K++++ L       
Sbjct: 146 SVKAETKAPAPESERTGP-------------------TRKSLEDIRKELTAKLG------ 180

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
            +     E       + +   R    FD +S+   P  + +L+ I   L+ +   +++ G
Sbjct: 181 -LDTSAVEIVPRENGVELN-LRGAAFFDLASAEIKPAALPLLRDIAATLSGTPYKVTVEG 238

Query: 271 HTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328
           HTD  P  + +   NW LS  RA    + L+  GV  + + ++ G A  +    +D    
Sbjct: 239 HTDNLPIESWLYPSNWELSSARASRVARFLIDGGVPRNHL-RVEGLADTQPVAPNDDEAG 297

Query: 329 -------SANRRIDILV 338
                  + NRR+ ILV
Sbjct: 298 RPIPENQAKNRRVVILV 314


>gi|289208360|ref|YP_003460426.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943991|gb|ADC71690.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 305

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 60/324 (18%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N  +W I Y D +T+L+AFF+VM+ I++ DD   + + +       +L+ A
Sbjct: 3   RRKRHEEAENHEAWAIPYGDLVTLLLAFFVVMYAISSVDDGKYRVLSE-------SLVDA 55

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            +                 + S+DE      +D++ G  +                    
Sbjct: 56  FRAPAQTDPIQVGEPTVSREQSLDEMRALVPIDVQPGIVD-------------------- 95

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +         S    D     +L+K +                      + L ++A ++
Sbjct: 96  -DGVAPIDMAFSGLLDDAGTDDELQKFL----------------------EALAEVADEL 132

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              ++ L+ D     +        + I I    +  +F   S+   PE   +L ++G +L
Sbjct: 133 EMAMAPLIEDG---DLRVSREAYWLEIEIT---SRLLFGSGSATLNPEARSLLDEVGAIL 186

Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A     + + GHTD  P +      NW LS  RA +   V   +G+    +  + G+  H
Sbjct: 187 APRVSRVHVEGHTDNVPIQTAVYPSNWELSSGRAAAVVSVFEDAGIEPKNLVAL-GYGEH 245

Query: 319 RLKIASDPM--NSANRRIDILVED 340
           R   ++D     + NRR+ I+V  
Sbjct: 246 RPVASNDTEQGRAENRRVAIVVLP 269


>gi|325290746|ref|YP_004266927.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966147|gb|ADY56926.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 273

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 120/326 (36%), Gaps = 72/326 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    + P N   W I Y+D +T+LM FF+VM+ ++  D+D  +A               
Sbjct: 3   RKKHSEAPENHERWLITYSDLITLLMIFFVVMYSMSKVDNDKFRA--------------- 47

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
              + D  N     S  +I +                                      Q
Sbjct: 48  ---MADALNMTLGGSPGRISI-------------------------------------AQ 67

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +    + +     +      STD E S   ++N     +  E +  +  K +L   +K  
Sbjct: 68  TSGGDSLIETGGPQNNPQSASTDPESSGQLQKNN-SGNVDMETMTILDIKAKLDQFSK-- 124

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                   A+ I   ++  T   G+++SI D     +F   S+   P  + +LQKI  VL
Sbjct: 125 --------ANGIESKLISSTEERGLVVSIQDT---LLFQPGSAEISPNALDILQKISSVL 173

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A S   I + GHT   P        NW LS+ RA +   +L +SG    +    +G+   
Sbjct: 174 AASQNYIKVEGHTCTLPIHTSQYRSNWELSVIRATNVVHILAESGQINSKRLSATGYGEF 233

Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342
           R   ++D       NRR+D+++   +
Sbjct: 234 RPIASNDTDEGRIKNRRVDLIILRSK 259


>gi|159045920|ref|YP_001534714.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12]
 gi|157913680|gb|ABV95113.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12]
          Length = 272

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 128/332 (38%), Gaps = 69/332 (20%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +    +IIK+K  +    ++ G+WK+ YADF+T +MA F ++  +     + ++      
Sbjct: 4   DTPAPVIIKRKKVVAGGGHHGGAWKVAYADFVTAMMA-FFMLMWLLNATTEKQR------ 56

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                      KGI D  NP                       + +   +   +     +
Sbjct: 57  -----------KGIADYFNP----------------------TIPVNRISGGGEGMFGGD 83

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           NIF   +  +S    +  +  S                           S+ + L    +
Sbjct: 84  NIFSDVSLARSGTGGSENSSRS---------------------------SQLEALRAAEE 116

Query: 190 KRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            R+Q L++ +   +    VA+ + + V    T  G+++ + DQ    +F   S+      
Sbjct: 117 ARMQALSEDLLGLSGESDVAEQLRRHVSTRVTDRGLVVDLFDQGEATVFVPGSTELTLLG 176

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+ I EV +     +SI GH  + P     RD W +S  RA+ A   L   G +E R
Sbjct: 177 KALLKVIHEVFSVVDNPLSITGHVPSQPVVLRERDAWEVSTSRAHVARSTLESYGFAESR 236

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           I K++G A  +     D ++S N R++I++  
Sbjct: 237 IMKVAGQADRKPAAYPD-ISSKNNRLEIVLLR 267


>gi|88704266|ref|ZP_01101980.1| motB family protein [Congregibacter litoralis KT71]
 gi|88701317|gb|EAQ98422.1| motB family protein [Congregibacter litoralis KT71]
          Length = 286

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 116/313 (37%), Gaps = 56/313 (17%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
              +AD M++LM FF+++      D    K I               K  F  QN  E  
Sbjct: 1   MATFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSM-----------KVAFGVQNEFELE 49

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
              K    +    +       I  T Q+   Q  + ++                      
Sbjct: 50  DIPKGTSVVATEFSPGETSDTIVDTIQQVTDQTTDPSLRV-------------------- 89

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G+   + ++ E+ + ++    L   ++ +  A K K  L+D  +                
Sbjct: 90  GEGELEDSEAEELLQQKITALL---AETEADADKLKDMLEDEVQ--------------TG 132

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V  E+    I + I   R    F   S+    + + V+ +I E L      ISI GHTD
Sbjct: 133 KVDVESDGRTITVRI---REQGSFPSGSATLNTDFVPVMARIREALTEIPGTISIEGHTD 189

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           ++P R      NW LS  RA S    L++ G+ +D    + GFA  R    +D     ++
Sbjct: 190 STPLRGGRYESNWGLSSSRALSVTHELLREGLLKDDRMMVVGFADTRPFTFNDTVEGRAS 249

Query: 331 NRRIDILVEDRQG 343
           NRR++I++  RQG
Sbjct: 250 NRRVEIVI--RQG 260


>gi|254517028|ref|ZP_05129086.1| flagellar motor protein [gamma proteobacterium NOR5-3]
 gi|219674533|gb|EED30901.1| flagellar motor protein [gamma proteobacterium NOR5-3]
          Length = 286

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 116/313 (37%), Gaps = 56/313 (17%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
              +AD M++LM FF+++      D +  K I               K  F  QN  E  
Sbjct: 1   MATFADLMSLLMCFFVLLLSFAEMDVEKFKQIAGSM-----------KVAFGVQNEFELE 49

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
              K    +    +          T Q+   +  + ++                      
Sbjct: 50  DIPKGTSVVATEFSPGQTSDTPIETIQQITDETTDPSLRV-------------------- 89

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G    +  ++E+ + ++    L   ++ +  A K K  L+D  +                
Sbjct: 90  GDGEMEDAEVEELLQQKITALL---AETQADAEKLKDMLEDETQ--------------TG 132

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V  E+    I + I   R    F   S+    + + V+Q+I + L      ISI GHTD
Sbjct: 133 KVDVESDGRTITVRI---REQGSFPSGSANLNTDFVPVMQRIRDALVEIPGTISIEGHTD 189

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           ++P R      NW LS  RA S    L++ G+ +D    + GFA  R    +D     ++
Sbjct: 190 STPLRGGRYESNWGLSSSRALSVTHELLRDGLLKDDRMMVVGFADTRPFTFNDTVEGRAS 249

Query: 331 NRRIDILVEDRQG 343
           NRR++I++  RQG
Sbjct: 250 NRRVEIVI--RQG 260


>gi|304405743|ref|ZP_07387401.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304344986|gb|EFM10822.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 278

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 126/328 (38%), Gaps = 69/328 (21%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +   SW I YAD MT+L+A F+V++ +++ D      + + FN      +
Sbjct: 3   RRRKHEEHEEHADESWLIPYADLMTLLLALFIVLFSMSSVDAKRFDEMSRAFN----MAL 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ D     +                                          L++ 
Sbjct: 59  DGGVGVLDNFRSVQTGKD--------------------------------------LNDE 80

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           ++ E  K    + +       +  D  + + K                 K ++ L+ L K
Sbjct: 81  KEREKSKQEQKQQTVTKTQQQQQQDDLEKLRK-----------------KEQEDLEKLKK 123

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   +  +    +   +  +  ++ +LI+I D     ++   SS   PE+  + Q I +
Sbjct: 124 QLDQYIKSM---GLTTQLDTKLNQSQLLITISDN---ALYASGSSAVKPESRKLGQAIAK 177

Query: 258 VLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I + GHTD  P  N   RDNW LS DRA +  Q+L+ S   + ++   +G+
Sbjct: 178 MLKQYPGYEIIVAGHTDNQPISNSDFRDNWDLSSDRALNFMQILLASAQLDPKLISSTGY 237

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341
              R     A++   S NRR+++ +  +
Sbjct: 238 GEFRPLTSNATEAGRSKNRRVEVSLMRK 265


>gi|311696900|gb|ADP99773.1| flagellar motor protein MotB [marine bacterium HP15]
          Length = 307

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 99/320 (30%), Gaps = 63/320 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
            ++    + +W + +AD M++LM FF+++   +  D    K I              SK 
Sbjct: 5   PEEEKPGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGEL----------SKA 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
              +++ P            D+          +    Q    +  E              
Sbjct: 55  FGVQRDVPALEIPKGTSPIFDKFSPAPPEPTVVNEVKQTTTDEAPELQTLKSPTDM---- 110

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
                                                    +    ++++Q+    I   
Sbjct: 111 ----------------------------------------AVEAAMEEQMQETMDDILKV 130

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   +AD          +     I I        F   S+    E   +L  + EV+   
Sbjct: 131 LEPAIADG-----RINVSEDQRRIVIR-VEEKGSFPSGSAQLTWEFEGLLLDMAEVIEGI 184

Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ++I GHTD  P R +    NW LS  R+ +   VL+     E     ++G A  + +
Sbjct: 185 PGDLTIEGHTDNVPIRTDRFYSNWDLSAARSAAVANVLVARDQVEPTRLSVTGLADTKPR 244

Query: 322 IASD--PMNSANRRIDILVE 339
           + +      + NRR++I+++
Sbjct: 245 VPNTSAENRAKNRRVEIIID 264


>gi|292493578|ref|YP_003529017.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291582173|gb|ADE16630.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 279

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 72/325 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N   W + YADF+T+L AFF+VM+ +++ ++   + + +            
Sbjct: 3   RRRWQEDQENHERWLVSYADFITLLFAFFVVMYAVSSVNEGKYRVLSESLTAI------- 55

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                    P        I++     ++ +S              Q L  +    +  + 
Sbjct: 56  --------FPQASRRIEPIEVGGPGVVSGSSPIEIEALPAIPSSAQTLGISFPSAATQEH 107

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S                                                   L+ + +++
Sbjct: 108 SAMTS-----------------------------------------------LKAITEEV 120

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
             TL  L+ +++   V     +  + + I D     +F   S+    E + VL+K+ ++L
Sbjct: 121 RITLQPLIDEDL---VRLRQGQEWLEVEIND---RVLFTSGSAKLEAEAVPVLKKLAKIL 174

Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I + G TD  P        NW LS  RA S   +  + GVS  R++ I G+  +
Sbjct: 175 RRFPNPIQVEGFTDNVPISTAVFPSNWELSSARAASVVHLFDRFGVSPARMAAI-GYGQY 233

Query: 319 RLKIASDP--MNSANRRIDILVEDR 341
           R    +        NRR+ +++  R
Sbjct: 234 RPVADNSTPEGRRRNRRVALVILGR 258


>gi|116624960|ref|YP_827116.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228122|gb|ABJ86831.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 276

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 189 KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K+ +  L +KI   L  +    ++   V    T  G+ I +++      F+    +P   
Sbjct: 96  KEDMSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRIELLETEAGMFFESGRPLPTST 155

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
              +L+++ E L      + I GHTD+ PF       NW LS DRA +A +++  + V  
Sbjct: 156 GSELLKRLAEELGKMPNHLLIEGHTDSKPFSGDGTYTNWELSSDRANAARRLMESNAVRH 215

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           ++++++ GF   +L+   DP +++NRR+ ++V+
Sbjct: 216 EQVAQVRGFGDRQLRHPEDPEHASNRRVSVIVQ 248



 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 13/194 (6%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---P 71
           I + KK  +    ++ G+WK+ YADF+T +MA F+V+W+++A D+  K+AI  +FN    
Sbjct: 18  IFVIKKKKVMHGGHHGGAWKVAYADFVTAMMALFIVLWLMSA-DEKVKEAISAFFNNPTG 76

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--------KNSVDLKIGSTNQKKQ 123
            G  + T S G  +    P+    +K+   I++ +         K+ V++ I S   + +
Sbjct: 77  PGTQIGTDSAGTGNAIEVPKED-MSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRIE 135

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
               E  +F+ S         + L +   +      +  L +     + +          
Sbjct: 136 LLETEAGMFFESGRPLPTSTGSELLKRLAEELGKMPNHLLIEGHTDSKPFSGDGTYTNWE 195

Query: 184 LAMKRKKRLQDLAK 197
           L+  R    + L +
Sbjct: 196 LSSDRANAARRLME 209


>gi|220934517|ref|YP_002513416.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995827|gb|ACL72429.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 118/327 (36%), Gaps = 60/327 (18%)

Query: 17  IKKKVAIDDTPN-NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           + ++       + N  +W I Y D +T+L+AFF+VM+ I++ ++   + +         +
Sbjct: 1   MSRRSRKHHEEHVNHEAWAIPYGDLITLLLAFFVVMYAISSVNEGKYRVLSD-------S 53

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           L+ A +       P +     +    +++  T++   L +G+   +              
Sbjct: 54  LVAAFRAPPKSTEPIQIGEVGRPAPEMEQQQTRSLAPLDLGAAPAQPGV----------- 102

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                                          I++  +  L     +        + +  L
Sbjct: 103 -------------------------------IDRGMDDLLRDAELDADELQAAAEGMSRL 131

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A +I   +  L+  ++   +     R  I + I     + +F   S+    E + VLQ++
Sbjct: 132 ADEIERAMLPLMDADL---IRMRRDRFWIEVEI---NTSLLFASGSAQLSSEAVPVLQRL 185

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L      I + G TD  P        NW LS  RA S   +  ++ +   R++ I G
Sbjct: 186 ATILRDFPARIQVEGFTDTVPINTPIFPSNWELSAARAASVVNLFSRNQLDPTRMAAI-G 244

Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339
           +  +R    +D       NRR+ I+V 
Sbjct: 245 YGEYRPIADNDTAEGRRQNRRVSIVVL 271


>gi|253575920|ref|ZP_04853254.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844714|gb|EES72728.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 293

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 114/313 (36%), Gaps = 62/313 (19%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+ FF++M+ ++  D +  + +        +        I +  +    
Sbjct: 36  WMITYADLITLLLIFFVMMYAMSRLDVEKYEVVTSSL----QQTFKGGDSILELGS---- 87

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                                  G T    +Y          S S+Q E           
Sbjct: 88  -----------------------GITGTADRYSHKNPPASADSGSKQGE----------- 113

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G+      D              PL++ ++   K+++ L +L K I S +     +++ 
Sbjct: 114 -GQGTTGQADSSGQA---------PLTERELAFRKQEEELANLMKLIESYIK---DNSLE 160

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +       GI I++ D     +FD   +     +   L K+  +      VISI GHT
Sbjct: 161 DQIHVADLPQGISITLSD---RFLFDTGKADLKSGSAKTLAKLASLFRQLDTVISIEGHT 217

Query: 273 DASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           D  P  + +  +DNW LS  RA S  +  +     + +  + +G+A  R    +D     
Sbjct: 218 DNLPIVYASEFKDNWELSGARALSVLRFFVDKEKLDPQQFQYAGYADTRPAADNDTPEGR 277

Query: 329 SANRRIDILVEDR 341
             NRR++I V  +
Sbjct: 278 QKNRRVEITVLRQ 290


>gi|192361715|ref|YP_001982600.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107]
 gi|190687880|gb|ACE85558.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107]
          Length = 294

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 126/326 (38%), Gaps = 62/326 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +   +D   N   W + YADF+T+L AFF+VM+ I+   +   + + Q F       + A
Sbjct: 3   RRRREDIHVNHERWLVSYADFITLLFAFFVVMYSISQVSESKYRVLSQTF-------VQA 55

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K   D Q+  E ++Q          +T ++  +      +    Q   +    + + Q 
Sbjct: 56  FKPTTDIQSNQEPAAQ----------LTPSNDVITPVDLGKTAVEQVTNDEQVPIISDQA 105

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +     L +                                    +K    L  ++  +
Sbjct: 106 PKDTTPQLEKP-----------------------------------VKTSDELAQISDLV 130

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +   S L+ + +++     +    + I + D     +F   ++ P  + +V+  +I  +L
Sbjct: 131 TEKFSQLIDEQLIQ---VSSNELWLQIELKDS---ILFASGNADPSAQAMVIFDEISRIL 184

Query: 260 AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
            + +  I + G TD  P  +     NW LS  RA +  ++L   G++ +R++ + G+   
Sbjct: 185 KNYSNPIQVEGFTDNVPINSARYPTNWELSSARASAIVKILASKGIAPERLAAV-GYGEF 243

Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342
           +   ++      + NRR+ I+V  R+
Sbjct: 244 QPVASNATPEGRAQNRRVAIMVAKRK 269


>gi|254492051|ref|ZP_05105228.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224462748|gb|EEF79020.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 297

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 64/323 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +         L ++   +AD M++LM FF+++      D    K + +            
Sbjct: 5   QQRTKRDAEGLPAYMATFADLMSLLMCFFVLLLSFAEMDALKYKMVVKSL---------- 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                            +    +   +  N +        Q+      +     +     
Sbjct: 55  -----------------ENAFGVQREVAANEIPKGTSIIAQEFSPGEPKPTPLKVVRQDT 97

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +  +  L    +  K                            LA ++ +++ +  +K 
Sbjct: 98  MDDSREQLKVTMDAEK----------------------------LAEQQAQQVAEETQKF 129

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L   + + +   ++ E+  + I+I I   R    F    +    + I +L+KI  VL
Sbjct: 130 KEALEKEIEEGL---IVVESQYSRIVIRI---REKGSFMSGDARLNNDFIPILKKIHNVL 183

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             +   I++ GHTD  P   +  R NW LS  RA S    L+  G        + G+A  
Sbjct: 184 LKTDGRIAVAGHTDDVPINTSRYRSNWELSTSRATSVVHELLAPGDMPAERFVLEGYADT 243

Query: 319 RLKIASD--PMNSANRRIDILVE 339
           +    +D     + NRR++I+V 
Sbjct: 244 KPLEPNDSPTNRARNRRVEIIVL 266


>gi|269796387|ref|YP_003315842.1| flagellar motor protein [Sanguibacter keddieii DSM 10542]
 gi|269098572|gb|ACZ23008.1| flagellar motor protein [Sanguibacter keddieii DSM 10542]
          Length = 295

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 69/326 (21%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYFNPFGKNLMTA 79
           ++   +   W + YAD MTVL+A F+V++ I+  D+      ++++   FN    ++++ 
Sbjct: 15  EEEHEDSERWLVSYADMMTVLVALFIVLYAISQVDEVKYDQLRQSLAAGFNAPQVSILSD 74

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G+                                                        
Sbjct: 75  GAGVL---------------------------------------------------TDNP 83

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +E    ++ +      D   S D   S    +      ++  ++      +   +LA+KI
Sbjct: 84  TEAVVPAVDKIIPSTVDESTSGDGGDSTGAGDAASPADIAAARV----EYQSFAELAEKI 139

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L+    + +V+   F     G++I +I       F   S++  P +  V+  +   +
Sbjct: 140 DTALAAGGMEGVVQ---FRIDERGLVIGMITDE--VFFASESAVLTPTSQAVVDTMTPFM 194

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHH 318
                 ISI GH D+ P       NW LS DRA     +++   G+   RIS + G+   
Sbjct: 195 LPLPNEISIEGHADSVPTAR-YASNWELSSDRATQVLRRMVEADGMPPTRISAV-GYGDS 252

Query: 319 RLKIASDPMNS--ANRRIDILVEDRQ 342
           R    ++      ANRR+D++V   Q
Sbjct: 253 RPLQPNETAEGLTANRRVDLVVLSDQ 278


>gi|288942612|ref|YP_003444852.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897984|gb|ADC63820.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 309

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 119/329 (36%), Gaps = 54/329 (16%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N  +W I Y D +T+LMAFF+VM+ ++  D      + +            
Sbjct: 3   RRKRHEEHVNHEAWAIPYGDLVTLLMAFFVVMYAVSVVDAGKYSVLSESL---------- 52

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                  +     +  + I +           D  + S       +R    +  ++ S  
Sbjct: 53  ------IEAFGTSAPIDPIQIG----------DPILESNPVSDDVRRSLAPVEVIAGSPA 96

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            E  +  L   S    D+  +  +  +  +E    L                +++++ ++
Sbjct: 97  IETTEPDLEPFSPT--DVALAALIGSASEEERGRILG--------------EIREMSTEL 140

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              +  L+       +  +     I ++I    +  +F   S+   P    VL ++  +L
Sbjct: 141 EEAMGSLIE---AGNIEIKRQPYWIEVAI---NSNLLFSSGSATLEPAARPVLARVARLL 194

Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 I + GHTD  P  N     NW LS  RA +   +  ++G+  +R+  I G+   
Sbjct: 195 GRRDVRIHVEGHTDNLPINNTIYPSNWELSSGRAATVVNLFAQNGIDPERMVAI-GYGQF 253

Query: 319 RL--KIASDPMNSANRRIDILVED--RQG 343
           +     A++   + NRR+ ++V    RQ 
Sbjct: 254 QPTDSNATEAGRARNRRVAVIVLPDVRQA 282


>gi|149191181|ref|ZP_01869439.1| chemotaxis LafU protein [Vibrio shilonii AK1]
 gi|148835019|gb|EDL51998.1| chemotaxis LafU protein [Vibrio shilonii AK1]
          Length = 322

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               ++ L+ LA+++   LSG+ A   +  V    T  G+ + I D    PMF +  +  
Sbjct: 109 EFNSQQELEVLAQRVKQELSGIDA---LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKV 165

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L  +  +L      + I GHTDAS ++     NW LS +RA SA   L K G+
Sbjct: 166 TPFYQDLLLNLAGLLEKIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLDKGGL 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            E  I +++G +       ++  +  NRRI++ +  
Sbjct: 226 QERHIFQVTGMSDTAPIDFNNAKSGINRRIELYILT 261



 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 3/186 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E    II KK         + G WK+  AD M  LM  FLV+WI+   D D +K +  YF
Sbjct: 2   EQPNVIINKKGRRKRGELQHGG-WKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLE 128
                 +M          +       +      D  + + N   +  G  N +++ + L 
Sbjct: 61  AYGNDPIMHLGTNESGGNSINPLPLPHVATSHYDAELHRINDTSVLEGEFNSQQELEVLA 120

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +    +   +     S+    +  K +   +D      +      P      +     
Sbjct: 121 QRVKQELSGIDA-LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKVTPFYQDLLLNLAGL 179

Query: 189 KKRLQD 194
            +++++
Sbjct: 180 LEKIEN 185


>gi|304321119|ref|YP_003854762.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503]
 gi|303300021|gb|ADM09620.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503]
          Length = 254

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 1/211 (0%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +   +  +Q +   +                D     +      L   +     +  + +
Sbjct: 45  LLNATTEEQRKGIADYFAPTLPVSPVSGGGKDALNGDSVLTEDTLSRSALYPADSTPKSR 104

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             + +   +         D+  + V    T  GI++ +ID     +F   SS P PE  V
Sbjct: 105 EAKAIESSVKEMAKASGLDDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELRV 164

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +++     +A   + I I GHTD+  ++  A  N+ LS DRA +A ++L+++GV + R++
Sbjct: 165 LVKAAASAVAAGGKKIRIVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRLT 224

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           +I+G A     I  +P + ANRRI I++ DR
Sbjct: 225 EITGRADREP-ITDNPADPANRRIAIVLLDR 254



 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 84/241 (34%), Gaps = 15/241 (6%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            ++   IIK+K       ++ G WK+ YADF+T +MAFFL+MW++NAT ++ +K I  YF
Sbjct: 2   SDNNPTIIKRKRITVVNGHHGGQWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYF 61

Query: 70  NPFGKNLMTASKGIFDEQN---------------PPERSSQNKIDLSIDEHITKNSVDLK 114
            P       +  G                     P + + +++   +I+  + + +    
Sbjct: 62  APTLPVSPVSGGGKDALNGDSVLTEDTLSRSALYPADSTPKSREAKAIESSVKEMAKASG 121

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
           +   +++ +    +  I       + +      +        +             +   
Sbjct: 122 LDDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELRVLVKAAASAVAAGGKKIR 181

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +   +  +          +  A + ++    L+   +    L E T       I D    
Sbjct: 182 IVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRLTEITGRADREPITDNPAD 241

Query: 235 P 235
           P
Sbjct: 242 P 242


>gi|226225701|ref|YP_002759807.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27]
 gi|226088892|dbj|BAH37337.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27]
          Length = 289

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQR 232
            L       I+    ++  + + + I   L+   +   +   V  + T+ G+ I +++  
Sbjct: 87  ALQRSPMRMIVRSTEQRTFEQMRQAILDKLATSDSLKRLNAQVDVQVTQEGLRIELVESE 146

Query: 233 -NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLD 290
                F   SS     T++ LQ IG+ L+   + + I GHTDA+PF R+ +  NW LS D
Sbjct: 147 RGDVYFPIGSSQMNSATVLTLQLIGQELSPIAQSLIIEGHTDAAPFGRDASYTNWELSAD 206

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA +A +VL  +G+   RIS++ G+A  + ++ +DP   ANRRI +L+
Sbjct: 207 RANAARRVLQAAGIDPKRISEVRGYADTKPRVINDPKAPANRRISVLI 254



 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LMTASKGIFDE 86
           SWK+ YADF+T +MAFF+VMWI+   DD TK+AIE YF NP G        ++  G    
Sbjct: 26  SWKVAYADFVTAMMAFFMVMWILG-MDDKTKQAIEGYFANPVGYKKGYGAGSSPLGTGSA 84

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            N  +RS    I  S ++   +      +         +RL   +      +
Sbjct: 85  VNALQRSPMRMIVRSTEQRTFEQMRQAILDKLATSDSLKRLNAQVDVQVTQE 136


>gi|89093474|ref|ZP_01166422.1| flagellar motor protein [Oceanospirillum sp. MED92]
 gi|89082164|gb|EAR61388.1| flagellar motor protein [Oceanospirillum sp. MED92]
          Length = 313

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 102/323 (31%), Gaps = 51/323 (15%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P  L +W   + D M++LM FF+++   +  D    K +                 
Sbjct: 10  CPPCPPGLPAWLATFGDLMSLLMCFFVLLLSFSEMDVLKFKQLAGSMR------------ 57

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                              +   I    +        Q+    R E             +
Sbjct: 58  ---------------EAFGVQNQIKVEDIPKGTSIIAQEFSPGRPEPTPLNEVRQMTVNN 102

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             N+L   S++G       +  +    ++        +    A    + + D + ++ + 
Sbjct: 103 DMNTLDIRSKEGDSDSPDQEAGEQQELQKEQEQEAKEEAVEFAAALAEEIGDGSVEVETD 162

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              ++     KG                      FD  S+    E+I VL KI +VL   
Sbjct: 163 GKKIIIRIKEKGS---------------------FDSGSAELKFESIPVLAKIRDVLLDV 201

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              +SI GH+D  P+       NW LS+ RA +    L      +    K+ G A  +  
Sbjct: 202 KGNVSIEGHSDNIPYAGRRFESNWDLSVARALAVAHELFGDPRIDQSRFKVLGMADTKPL 261

Query: 322 IASDP--MNSANRRIDILVEDRQ 342
           + +D       NRR++I+V   +
Sbjct: 262 VPNDTRANRVKNRRVEIIVTKGK 284


>gi|289523562|ref|ZP_06440416.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503254|gb|EFD24418.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 239

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L             +   L    +E  L  ++ K++ ++  ++      L ++N++  V 
Sbjct: 59  LPGGVTTIPGEETMQGAQLTGPGQEMTLNAEQVKKVHEMMVQL------LESENLMNEVT 112

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 GI+ISIID     +F   S   +P    ++ KI +++      IS+ GHTD  P
Sbjct: 113 VRIEERGIVISIID---GLLFQSGSVELIPPARRLIYKIAQIINDLPNQISVEGHTDNVP 169

Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
             R   RDNW LS  RA      L+++G+   R+ +  G+   R  + +D       NRR
Sbjct: 170 LNRGPYRDNWGLSAMRAAVVGSYLVEAGIDPKRL-RTVGYGQSRPLVPNDTEEHRRINRR 228

Query: 334 IDILVED 340
           +DI++ +
Sbjct: 229 VDIVILN 235



 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    D P   G+W   Y D +T+L+ FF+ ++  +  D    + +   F      L   
Sbjct: 3   RKRKKDLPQLRGNWLTTYGDMVTLLLTFFVFLYSFSTIDVQKFQKMIYSFQDAIGVLPGG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
              I     P E + Q        + +T N+  +K
Sbjct: 63  VTTI-----PGEETMQGAQLTGPGQEMTLNAEQVK 92


>gi|189426486|ref|YP_001953663.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189422745|gb|ACD97143.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 280

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 116/327 (35%), Gaps = 67/327 (20%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               +   N   W + Y DF+T+L A F+ M+ +  TD    + + Q           AS
Sbjct: 4   KREPEKHANHERWLVSYGDFLTLLFAVFVAMYAMGQTDKKKAEELTQSLRESFGYSTQAS 63

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G   ++   +      I     E          I  T++       + N+   + S+Q 
Sbjct: 64  AG---QKGVLQSHDIKPIPAIKPEMAV-------IPITDRMPPAGPRQGNVGGGAGSRQ- 112

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                                                        M  +K  +++A  I 
Sbjct: 113 ---------------------------------------------MAGEKEFREMASAIE 127

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + L   V       V    T+ G++IS+   +    FD  S+    E+I  L+ I + L+
Sbjct: 128 AYL---VKQGFQNKVALSITQRGLVISL---KEAGFFDSGSAKLKSESIQTLRGIADTLS 181

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318
                  + GHTD+ P R+   R NW LS  RA +    L+  +G S + +S + G+   
Sbjct: 182 RYANRFRVEGHTDSMPIRSTEFRSNWELSTARATNVIHFLIDSAGFSPESLSAV-GYGEF 240

Query: 319 RLKIASDPM--NSANRRIDILVEDRQG 343
           +  + +      + NRR+DI++   + 
Sbjct: 241 QPVVDNSTAEQRAKNRRVDIVLLADEA 267


>gi|148974248|ref|ZP_01811781.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3]
 gi|145965945|gb|EDK31193.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3]
          Length = 324

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               ++ L+ LA++I+  LSG+ A   +  V    T  G  + I D    PMF +  +  
Sbjct: 109 EFNSQQELELLAQRITQELSGIDA---LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKV 165

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L  +  +L +    + I GHTDAS ++     NW LS +RA SA   L K G+
Sbjct: 166 TPFYQDLLLNLAGLLENIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLNKGGL 225

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            E  I +++G +        +  +  NRRI++ +  
Sbjct: 226 QERHIFQVTGMSDTAPVDYENTKSGINRRIELYILT 261



 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 3/186 (1%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  Q II KK     +   + G WK+  AD M  LM  FLV+WI+   D D +K +  YF
Sbjct: 2   QQPQIIIQKKGRRKRNELQHGG-WKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLE 128
                 +M          +       +         + + N   +  G  N +++ + L 
Sbjct: 61  AYGNDPIMHLGTSESGGNSINPLPLPHVATSHYGADLHRINDTSVLQGEFNSQQELELLA 120

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             I    +   +     S+    +  K +   +D      +      P      +     
Sbjct: 121 QRITQELSGIDA-LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKVTPFYQDLLLNLAGL 179

Query: 189 KKRLQD 194
            + +++
Sbjct: 180 LENIEN 185


>gi|296534172|ref|ZP_06896663.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265499|gb|EFH11633.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 157

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 2/146 (1%)

Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           A++I + +       ++ + +L E TR G+ I ++D    P+F    + P      +L +
Sbjct: 1   AEEIRAAIQSDPGLSDLARQLLIEQTREGLRIQLVDADGQPVFATGQAAPNQRGRALLLR 60

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  VLA     + I GHTDA+PFR    R NW LS +RA +A +VL+++G++E+R+  ++
Sbjct: 61  VATVLARLPYGLDIAGHTDAAPFRGGGDRSNWELSAERAGAARRVLIEAGIAEERLRAVA 120

Query: 314 GFAHHRLKIASDPMNSANRRIDILVE 339
           G A   L     P+++ANRR+ ILV 
Sbjct: 121 GRADRDLLSPDRPLDAANRRVSILVL 146


>gi|333010781|gb|EGK30207.1| lateral flagellar motor protein B [Shigella flexneri K-272]
 gi|333021279|gb|EGK40532.1| lateral flagellar motor protein B [Shigella flexneri K-227]
          Length = 256

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                      + E        K  +L  K    L +LA  I++       +     +  
Sbjct: 40  PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E    G+ + I D +N  MF++ S+  +P    +L ++  V       I I GHTDA   
Sbjct: 97  EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAN 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +N   +NW LS DRA SA +VL ++G+ ED++ ++S  A   L  A +P ++ NRRI+I+
Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216

Query: 338 VEDRQG 343
           V  +  
Sbjct: 217 VLTKSA 222


>gi|260892160|ref|YP_003238257.1| OmpA/MotB domain protein [Ammonifex degensii KC4]
 gi|260864301|gb|ACX51407.1| OmpA/MotB domain protein [Ammonifex degensii KC4]
          Length = 268

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 111/312 (35%), Gaps = 88/312 (28%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+ FF+V++  +  D +    I +         +    G+  E   P  
Sbjct: 16  WLITYADLITLLLIFFIVLYTFSKIDAEKFAGIAEAL----ARALGGGAGMILEGQGP-- 69

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                                                    +S + + E  +++    S 
Sbjct: 70  ---------------------------------------AVVSGAPKFEPGEDAKFALSG 90

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G++  +   ++  I K         ++EK L  K   R+++                  
Sbjct: 91  GGEENLQLEKIKAEIEK--------YAREKGLQAKITARIEE------------------ 124

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
                     G+++S++D     +F   S+   P+   V++++G++L      + I GHT
Sbjct: 125 ---------RGLVVSVLDT---VLFPIGSAELTPQAKEVVREVGKILLKMPNCVRIEGHT 172

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--N 328
              P        NW LS+ RA S  Q L+ +      R+    G+A +R  + +D     
Sbjct: 173 CDLPIHTPRYPSNWELSVARATSVVQELIHTVNFPPQRLCA-CGYAEYRPLVPNDSEEHR 231

Query: 329 SANRRIDILVED 340
             NRR+D +V  
Sbjct: 232 QMNRRVDFVVLR 243


>gi|297544067|ref|YP_003676369.1| OmpA/MotB domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841842|gb|ADH60358.1| OmpA/MotB domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 239

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L G V +N ++G++       G++IS+ D     +FD  S+   PE   VL KIG
Sbjct: 84  EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDT---LLFDLGSADVHPEEKDVLIKIG 140

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N     NW LS+ RA +  ++L+ ++GV   +IS + G
Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199

Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340
           +  +R  + +D       NRR+DI++ +
Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVIMN 227



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLM 77
           ++   D++  N G W + Y+D M++L+ FF+V++ I+  +      +       FG +  
Sbjct: 2   RRWEEDESKLNTGRWVLTYSDMMSLLLVFFIVLYSISTLNAAKFAQLSVSLSRAFGGSDY 61

Query: 78  TASKGIFD---EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
              + + D   + N  +++S  +I+  ++  + +N++   + S   ++       +    
Sbjct: 62  VIGQYMGDSFVQGNSGDKNSLGEIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDTLLF 121

Query: 135 SNSQQSEHCKN 145
                  H + 
Sbjct: 122 DLGSADVHPEE 132


>gi|289577780|ref|YP_003476407.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527493|gb|ADD01845.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
          Length = 239

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L G V +N ++G++       G++IS+ D     +FD  S+   PE   VL KIG
Sbjct: 84  EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDT---ILFDLGSADVHPEEKDVLIKIG 140

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314
            +L      I + G TD  P  N     NW LS+ RA +  ++L+ ++GV   +IS + G
Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199

Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340
           +  +R  + +D       NRR+DI++ +
Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVIMN 227



 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLM 77
           ++   D++  N G W + Y+D M++L+ FF+V++ I+  +      +       FG +  
Sbjct: 2   RRWEEDESKLNTGRWVLTYSDMMSLLLVFFIVLYSISTLNAAKFAQLSISLSRAFGGSDY 61

Query: 78  TASKGIFD---EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
              + + D   + N  +++S  +I+  ++  + +N++   + S   ++       +    
Sbjct: 62  VIGQYMGDSFVQGNSGDKNSLGEIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDTILF 121

Query: 135 SNSQQSEHCKN 145
                  H + 
Sbjct: 122 DLGSADVHPEE 132


>gi|229543005|ref|ZP_04432065.1| OmpA/MotB domain protein [Bacillus coagulans 36D1]
 gi|229327425|gb|EEN93100.1| OmpA/MotB domain protein [Bacillus coagulans 36D1]
          Length = 274

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 125/328 (38%), Gaps = 67/328 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KK+    +   N  +W + Y+DF+T+L+A F+V++ +++ D    +     F+     + 
Sbjct: 3   KKRKKRQEEEGNSEAWLLPYSDFLTLLLALFIVLFAMSSIDAQKFQK----FSKVLNGVF 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                 FD                     TK +      +++ +K  ++ +N+     +S
Sbjct: 59  VGGTSFFDY--------------------TKQTSGDDNSTSDTEKFLEQKKNDAQKNGDS 98

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             +    NS T  S    D                                  +L++  +
Sbjct: 99  TTNGSKSNSTTDASNGQGD---------------------------------AQLKETQQ 125

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I++ ++    + +        T  G+LI+I D     +FD   +    E I   + +  
Sbjct: 126 RINTYIAH---NKLEGKFETSLTGEGLLITIRDN---VLFDSGKAEVRKEDIKTAKALSN 179

Query: 258 VL-AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I + GHTD  P  N   + NW LS+ RA +  ++++++     +     G+
Sbjct: 180 LLVMDPPRSIIVSGHTDNVPIHNSVFQSNWDLSVMRATNFLKIILENKNLNPKYFSAKGY 239

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341
             +    ++D     + NRR+++L+  +
Sbjct: 240 GEYHPIASNDTQGGRAKNRRVEVLILPK 267


>gi|218290401|ref|ZP_03494531.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239529|gb|EED06723.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 271

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 120/328 (36%), Gaps = 73/328 (22%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++       N+   W + Y+D +T+L+ FF+VM+ ++  D      + +         
Sbjct: 1   MERRKKPKHKQNH-ERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHP- 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                                      + I  N     +  +  +   Q+  +N+     
Sbjct: 59  --------------------------GQQIPLNMGTTALLESGDQNNGQQFPDNL----- 87

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q   +  N+ T++ +  +DL  +                             K+L  L 
Sbjct: 88  -QNPNNPSNATTQNQQSNEDLTDA-----------------------------KQLDLLY 117

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++I   ++   + ++   V       G+ I++ D     +F+   ++ LP+   +++ + 
Sbjct: 118 REIQQYIA---SHHLSGEVQVIDEARGVQITMRD---VALFNTGQAVLLPKAKAIIEGLI 171

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
                 +  I + G+TD  P        NW LS  RA S  + L   G++  R++ + G+
Sbjct: 172 PFFKQISNDIVVEGYTDTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGM-GY 230

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341
             +    ++       ANRR++I++  +
Sbjct: 231 GQYHPVASNATPAGRQANRRVNIVILRK 258


>gi|256376462|ref|YP_003100122.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827]
 gi|255920765|gb|ACU36276.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827]
          Length = 295

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 117/330 (35%), Gaps = 61/330 (18%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +K   ++   +   W + YAD +T+LM  F+VM+ +++ D    + +++          +
Sbjct: 7   RKNKHEEQHVHDERWMVTYADMITLLMVLFIVMFAMSSVDSQKFQELKKSL----AGAFS 62

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            S  I         S+   I+         + VDLK                        
Sbjct: 63  GSDHITVFGAGGAGSANGGIN--------PDPVDLK------------------------ 90

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
                          G    +    + +    +       +K    A    + L++L ++
Sbjct: 91  -----------SEASGSGSTQDLSSKAAQEAVQQADRQKAAKNLKAAEAEVQHLKELGEQ 139

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++  L       +     F     G+   +     + +F    +  LP+   ++  +  V
Sbjct: 140 MAKQLQ---DQGLGGTAQFRVDDRGL--VVTVVTTSVVFAGDRAELLPDGQRIVDALAPV 194

Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFA 316
           L      + + GHT+  P   +    +W LS  RA S  + L  + G++ DR++ + G+A
Sbjct: 195 LKSVGNRVEVDGHTNQLPVATVNYPSSWELSTARASSVVRYLIERDGLASDRLTAV-GYA 253

Query: 317 HHRLKIASDPMNSA----NRRIDILVEDRQ 342
             R     DP +      NRR++++V   Q
Sbjct: 254 DTRPLY--DPADPRSVTGNRRVEVVVLSDQ 281


>gi|258510423|ref|YP_003183857.1| OmpA/MotB domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477149|gb|ACV57468.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 271

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 120/328 (36%), Gaps = 73/328 (22%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++       N+   W + Y+D +T+L+ FF+VM+ ++  D      + +         
Sbjct: 1   MERRKKPKHKQNH-ERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHP- 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                                      + I  N     +  +  +   Q+  +N+     
Sbjct: 59  --------------------------GQQIPLNMGTTALLESGDQNNGQQFPDNL----- 87

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q   +  N+ T++ +  +DL  +                             K+L  L 
Sbjct: 88  -QNPNNPSNATTQNQQSNEDLTDA-----------------------------KQLDLLY 117

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++I   ++   + ++   V       G+ I++ D     +F+   ++ LP+   +++ + 
Sbjct: 118 REIQQYIA---SHHLSGEVQVIDEARGVQITMRD---VALFNTGQAVLLPKAKAIIEGLI 171

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
                 +  I + G+TD  P        NW LS  RA S  + L   G++  R++ + G+
Sbjct: 172 PFFKQISNDIVVEGYTDTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGM-GY 230

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341
             +    ++       ANRR++I++  +
Sbjct: 231 GQYHPVASNATPAGRQANRRVNIVILRK 258


>gi|326389648|ref|ZP_08211214.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994363|gb|EGD52789.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 237

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L+G + +N ++G++       G++IS+ D     +FD  S+   PE   VL KIG
Sbjct: 83  EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDS---LLFDLGSADVHPEEKDVLIKIG 139

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            +L      I + G TD  P  N     NW LS+ RA +  ++L+   G+   RIS + G
Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198

Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           +  +R  + +D       NRR+DI++ + +
Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 228



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFGKN 75
           K   D++  N   W + Y+D +T+L+ FF+VM+ I+  +      I       F      
Sbjct: 2   KRLEDESKPNHERWLLTYSDMITLLLIFFIVMYTISTINATKFAQIASSLSKTFTGTDYV 61

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK-IGSTNQKKQYQRLENNIFYL 134
           +   S   F + N  +++S  +I+  ++  I +N++        +++     +++++ + 
Sbjct: 62  IGQYSGSSFVQGNSGDKNSLGEIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDSLLFD 121

Query: 135 SNSQQ 139
             S  
Sbjct: 122 LGSAD 126


>gi|90415360|ref|ZP_01223294.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
 gi|90332683|gb|EAS47853.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
          Length = 408

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 130/359 (36%), Gaps = 54/359 (15%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASK 81
              +W   +AD  T+LMAFF+++      +    K +    N                ++
Sbjct: 54  GAPAWMATFADMATLLMAFFVLILSFAHMNVPKYKEVSGSMNQKFGVQKIVPVVEQPTAE 113

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
            +  +Q    +     +D+  ++   +   +        KK      ++   L  S   E
Sbjct: 114 NVIAKQYKTAKVDPTLLDVIQEQTTAERQPEDVELKDKLKKNKSSTNSDAEVLKKSLAKE 173

Query: 142 HCKN----------------SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
             +                 S  +  ++G+D    +  +   +  E Y     ++ ++ +
Sbjct: 174 IAEGKVKVTIKDKKLVVEVVSEAKSGKQGEDRKSKSGAKLLQSDLEVYAKVASAQAQVAS 233

Query: 186 MKR---------------------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
             +                     ++ + D  +KI + LS  +A+ +      E  R G 
Sbjct: 234 QVQVIDASPESLDGDLSGRGSQAGEQAIADQYEKIRARLSNEIAEGLA-----EVDRDGD 288

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIAR 282
            I ++       F    +   P    +L K+GE +   + +I+I GHTD  P  F    R
Sbjct: 289 KI-VVRLAERGSFRSGYADLQPSFKPLLDKVGESITDGSSLITIEGHTDNIPMAFSERFR 347

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            NW LS  R+ +    L+ S   +D    ++G A  +  + +D     S NRRI+++++
Sbjct: 348 SNWDLSAARSAAVADYLLNSSEIDDGRVSVTGLADTKPLVPNDSPEGRSKNRRIEVIID 406


>gi|298507057|gb|ADI85780.1| chemotaxis MotB protein [Geobacter sulfurreducens KN400]
          Length = 266

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 112/327 (34%), Gaps = 75/327 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N   W + YADF+T+L A F+ ++ +  +D +  + + Q            
Sbjct: 3   KPKKHEKEPNHERWLVSYADFITLLFAVFVTLYAMGQSDKEKIEQVMQSMR--------E 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S G     + P  +  +  D+ I   I  +  +                           
Sbjct: 55  SFGFTATGSAPRPAVLDSSDMRIMPSIAPDLTN--------------------------- 87

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                        KG+   K+ D +  I   E                  K  Q +   I
Sbjct: 88  -------------KGRGQGKNADSKGRIRATE------------------KDFQAIKSSI 116

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L   +       V     R G+++S+   +    FD  S+I       +L K+ E L
Sbjct: 117 EAYL---IKQGAQDKVNVGINRRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESL 170

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +  +  + + GHTD  P  +     NW LS  RA +    L +S   +      +GF  +
Sbjct: 171 SAYSNPVRVEGHTDTMPISSAQFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEY 230

Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343
           R    ++     S NRR+DI++   +G
Sbjct: 231 RPIADNNTAEGRSKNRRVDIVLLSGEG 257


>gi|39998119|ref|NP_954070.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA]
 gi|39985064|gb|AAR36420.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA]
          Length = 266

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 113/327 (34%), Gaps = 75/327 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N   W + YADF+T+L A F+ ++ +  +D +  + + Q            
Sbjct: 3   KPKKHEKEPNHERWLVSYADFITLLFAVFVTLYAMGQSDKEKIEQVMQSMR--------E 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S G     + P  +  +  D+ I   I  +  +                           
Sbjct: 55  SFGFTATGSAPRPAVLDSSDMRIMPSIAPDLTN--------------------------- 87

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                        KG+   K+ D +  I   E                  K  Q +   I
Sbjct: 88  -------------KGRGQGKNADSKGRIRATE------------------KDFQAIKSSI 116

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L   +       V     R G+++S+   +    FD  S+I       +L K+ E L
Sbjct: 117 EAYL---IKQGAQDKVNVGINRRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESL 170

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +  +  + + GHTD  P  ++    NW LS  RA +    L +S   +      +GF  +
Sbjct: 171 SAYSNPVRVEGHTDTMPISSVQFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEY 230

Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343
           R    ++     S NRR+DI++   +G
Sbjct: 231 RPIADNNTAEGRSKNRRVDIVLLSGEG 257


>gi|295704127|ref|YP_003597202.1| chemotaxis protein MotB [Bacillus megaterium DSM 319]
 gi|294801786|gb|ADF38852.1| chemotaxis protein MotB [Bacillus megaterium DSM 319]
          Length = 277

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 62/328 (18%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++    +  +   SW + Y+D +T+L+A F+V++ +++ D    K + + FN       
Sbjct: 3   RRRKRKHEEDHVDESWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAF 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ + Q+                                                 
Sbjct: 59  VGGTGVMEFQSL------------------------------------------------ 70

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q+SE         + K        +   + +   +  L    KE+ +    ++ LQ +  
Sbjct: 71  QESEEAVQPSNTPAAKSTKKTNEVETAPNQSPASSQSLTSEQKEQTIREADQEELQQIQS 130

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI++ +      N+   +    T  G+LISI D     +FD   +    E   +   I E
Sbjct: 131 KINAYIQ---KKNLTNQLQTSLTEEGLLISIRDN---VLFDSGRAQVRSEDTKIANDISE 184

Query: 258 VLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I I GHTD  P RN     NW LS+ RA +  +V++K+      +    GF
Sbjct: 185 LLVIDPPRNIIISGHTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLSPSMFSAKGF 244

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341
              +   +++     + NRR++IL+  R
Sbjct: 245 GEFKPVTSNNTAEGQAKNRRVEILITPR 272


>gi|294498805|ref|YP_003562505.1| chemotaxis protein MotB [Bacillus megaterium QM B1551]
 gi|294348742|gb|ADE69071.1| chemotaxis protein MotB [Bacillus megaterium QM B1551]
          Length = 277

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 123/328 (37%), Gaps = 62/328 (18%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++    +  +   SW + Y+D +T+L+A F+V++ +++ D    K + + FN       
Sbjct: 3   RRRKRKHEEDHVDESWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAF 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ + Q+                                                 
Sbjct: 59  VGGTGVMEFQSL------------------------------------------------ 70

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q+SE         + K  +     +   + +   +  L    KE+ +    ++ LQ +  
Sbjct: 71  QESEEAVQPSNTPAAKSTEKTNEVETAPNQSPASSQSLTSEQKEQTIREADQEELQQIQS 130

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI++ +      N+   +    T  G+LISI D     +FD   +    E   +   I E
Sbjct: 131 KINAYIK---KKNLTNQLQTSLTEEGLLISIRDN---VLFDSGRAQVRSEDTKIANDISE 184

Query: 258 VLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I I GHTD  P RN     NW LS+ RA +  +V++K+      +    GF
Sbjct: 185 LLVIDPPRNIIISGHTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLNPSMFSAKGF 244

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341
              +   +++     + NRR++IL+  R
Sbjct: 245 GEFKPVTSNNTAEGQAKNRRVEILITPR 272


>gi|307265590|ref|ZP_07547144.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919388|gb|EFN49608.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 237

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L+G + +N ++G++       G++IS+ D     +FD  S+   PE   VL KIG
Sbjct: 83  EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDS---LLFDLGSADVHPEEKDVLIKIG 139

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            +L      I + G TD  P  N     NW LS+ RA +  ++L+   G+   RIS + G
Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198

Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           +  +R  + +D       NRR+DI++ + +
Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 228



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFGKN 75
           K   D++  N   W + Y+D +T+L+ FF+VM+ I+  +      I       F      
Sbjct: 2   KRLEDESKPNHERWLLTYSDMITLLLIFFIVMYTISTINATKFAQIASSLSKTFTGTDYV 61

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK-IGSTNQKKQYQRLENNIFYL 134
           +   S   F + N  +++S  +I+  ++  I +N++        +++     +++++ + 
Sbjct: 62  IGQYSGSSFVQGNSGDKNSLGEIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDSLLFD 121

Query: 135 SNSQQ 139
             S  
Sbjct: 122 LGSAD 126


>gi|206889281|ref|YP_002248656.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741219|gb|ACI20276.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 213

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 20/188 (10%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ K+  +  S+ K       P+S E           +D  K I   L  L+ D  + G+
Sbjct: 43  DVTKAEKMTSSLRKVFKVIDEPVSFE-----------EDRNKAIIEDLRKLLND--ISGI 89

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
             ++   GI+I++ D     +F   S+   PE+   L +I E L      ++I GHTD  
Sbjct: 90  NIKSDARGIVITLPDS---LLFSSGSAELKPESTDALTRIAEKLKELPGKVAIEGHTDNI 146

Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332
           P  +     NW LS  RA S    L++ G+S DR   I+G+  ++    +D     + NR
Sbjct: 147 PISSSVYKSNWELSAARASSVLHFLLQRGLSPDRFL-IAGYGEYKPVATNDTDEGRAKNR 205

Query: 333 RIDILVED 340
           R+++++  
Sbjct: 206 RVELIILR 213



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 10/192 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I Y+DF+T+L  FF+ ++ +++ D    + +        K        + DE    E 
Sbjct: 18  WLISYSDFLTLLFTFFVALYALSSVDVTKAEKMTSSLRKVFK--------VIDEPVSFEE 69

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                I +     +  +   + I S  +       ++ +F   +++      ++LTR +E
Sbjct: 70  DRNKAI-IEDLRKLLNDISGINIKSDARGIVITLPDSLLFSSGSAELKPESTDALTRIAE 128

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NI 211
           K K+L     +E   +          S  ++ A +    L  L ++  S    L+A    
Sbjct: 129 KLKELPGKVAIEGHTDNIPISSSVYKSNWELSAARASSVLHFLLQRGLSPDRFLIAGYGE 188

Query: 212 VKGVLFETTRTG 223
            K V    T  G
Sbjct: 189 YKPVATNDTDEG 200


>gi|167038133|ref|YP_001665711.1| OmpA/MotB domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039156|ref|YP_001662141.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256750878|ref|ZP_05491762.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913254|ref|ZP_07130571.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561]
 gi|307723732|ref|YP_003903483.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320116543|ref|YP_004186702.1| OmpA/MotB domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166853396|gb|ABY91805.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X514]
 gi|166856967|gb|ABY95375.1| OmpA/MotB domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256750213|gb|EEU63233.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889939|gb|EFK85084.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561]
 gi|307580793|gb|ADN54192.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X513]
 gi|319929634|gb|ADV80319.1| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 238

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +I   L G + +N ++G +       G++IS+ D     +FD  S+   PE   VL KIG
Sbjct: 84  EIEKQLKGFIKENNLQGAVTSYIDERGLVISLQDS---LLFDLGSADVRPEEKEVLIKIG 140

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
           ++L      I + G TD  P  N     NW LS+ RA +  ++L+   G+   RIS + G
Sbjct: 141 DMLKSLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVNEVGIEPARISAV-G 199

Query: 315 FAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           +  +R  + ++       NRR+DI++ + +
Sbjct: 200 YGEYRPVVPNNSEENRRLNRRVDIVIMNTE 229



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72
           +K+    +  PN+   W + Y+D M++L+ FF+V++ I+  +      I       F   
Sbjct: 1   MKRLEEDESKPNH-DRWVLTYSDMMSLLLVFFIVLYSISTVNATKFAQIASSLSKTFTGT 59

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
              L   +   F + N  ++SS  +I+  +   I +N++   + S   ++ 
Sbjct: 60  DYVLFQYNGSSFMDGNSGDKSSLGEIEKQLKGFIKENNLQGAVTSYIDERG 110


>gi|296134255|ref|YP_003641502.1| OmpA/MotB domain protein [Thermincola sp. JR]
 gi|296032833|gb|ADG83601.1| OmpA/MotB domain protein [Thermincola potens JR]
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
            PL   +  A  +KK ++++ K      + +   N+   V+      G++IS+   + T 
Sbjct: 71  GPLVIPEQSAGAQKKEMEEMKKAKEQLDAYIKGQNLGGKVVVAYEERGLVISL---KETM 127

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294
            F   S+   P+    L KIG+VL +    + I GHT   P R      NW LS  RA +
Sbjct: 128 FFAIGSAAINPQAQETLIKIGQVLKNMPNNLRIEGHTCNLPIRTANFPSNWELSTARATN 187

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
             + L+   G    R+S  +G+  +R  + +  +   + NRR+DI+V  
Sbjct: 188 VVKFLIDRVGFDPKRLSA-TGYGEYRPLVPNTSEANRAMNRRVDIVVLR 235



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + K+    +   N   W I YAD +T+LM FF++M+ I+  +        Q  +     L
Sbjct: 1  MGKRAKEPEKAPNHERWLITYADLITLLMIFFIIMYTISNVNAKKF---AQLSSSLSSAL 57

Query: 77 MTASKGIFDEQNPPE 91
          +  + G F  + P  
Sbjct: 58 VGQNSGYFIGEAPGP 72


>gi|294084383|ref|YP_003551141.1| flagellar MotB protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663956|gb|ADE39057.1| flagellar MotB protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 384

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 126/368 (34%), Gaps = 54/368 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG----KNLM 77
               P    +W   +AD  T+LMAFF+++      +    K I     N FG      ++
Sbjct: 17  PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLKNAFGVQRTVPIV 76

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              KG          +        +++  TK++          K       +N   +  +
Sbjct: 77  EQPKGTTILSLNFSPNPAPSATNQMNQETTKDTQPDLDIKNKDKDDDGGDLDNAEDIVKA 136

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD--- 194
            +    +  +  +S   K +   T                L+  +       K   +   
Sbjct: 137 LEDAIARGEIEVESLGEKVIVNFTPTNAPEENMPQLLKETLNAIEQAKDAAGKAEAEVLF 196

Query: 195 --LAKKISSTL-----------------------------SGLVADNIVKGVLFETTRTG 223
             L +++   L                                +A++ +K  L +    G
Sbjct: 197 GGLEQQLEKMLAAAESASASQSQSEAEEAEAQEQQEKQNAQAAIAEDELKVALRQEIGQG 256

Query: 224 ILISIIDQRNTPM--------FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           + +++  + +  +        F   S+        ++Q+I EV A  +  I++ GHTD  
Sbjct: 257 L-VTVEREEDRVLITVGSGGAFASGSAELTDSAREIMQQIAEVSAGGSSSINVSGHTDNV 315

Query: 276 P--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSA 330
           P  F +  RDNW L+  RA S  Q L  SG V  +R+  +S F       ++D     + 
Sbjct: 316 PLIFGSQFRDNWDLAAARASSVVQALEDSGQVPGNRMQAVS-FGESMPLESNDTAEGRAL 374

Query: 331 NRRIDILV 338
           NRRI+I +
Sbjct: 375 NRRIEIEI 382


>gi|94500546|ref|ZP_01307077.1| flagellar motor protein [Oceanobacter sp. RED65]
 gi|94427336|gb|EAT12315.1| flagellar motor protein [Oceanobacter sp. RED65]
          Length = 331

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 104/319 (32%), Gaps = 43/319 (13%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
            L +W   + D M++LM FF+++      D    K +                       
Sbjct: 15  GLPAWLATFGDLMSLLMCFFVLLLSFAQMDAQKFKRLAGELR------------------ 56

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                    +   +   I  +          +       E         + S+  ++SL 
Sbjct: 57  ---------MAFGVQTTIRADDPPKGTSVIAKHFSPSIPEPTPINEIRQKTSDVTQSSLE 107

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +                  E         +K  A + ++   +LA ++   +S    
Sbjct: 108 VLCQDAITAQTEAKGNTGKQTREITVPKESESQKKQAEQAEETAFELATELEREIS---- 163

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
                 V  ET  + I+I I   R    F+   +    E + VL  I EVL      IS+
Sbjct: 164 ---KGQVELETQGSKIVIRI---REKGSFNAGGAYVEDEFLPVLDTIREVLVEVPGRISV 217

Query: 269 RGHTDASPF--RNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IA 323
            GHTD++P         NW LS  RA +  + L +   + E R  ++ G    R      
Sbjct: 218 EGHTDSTPLGRGGRYNSNWELSAARAAAVAEYLFIAPEMPESRF-RVVGHGSVRPVAENK 276

Query: 324 SDPMNSANRRIDILVEDRQ 342
           +    + NRR++I+V   +
Sbjct: 277 TAEGRAKNRRVEIIVLRSK 295


>gi|309789304|ref|ZP_07683895.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
 gi|308922839|gb|EFP68355.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
          Length = 137

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293
           MF   S+   P    +L+ I  VL      IS+ GHTD  P+ +      NW LS DRA 
Sbjct: 1   MFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRAN 60

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           ++ + LM  G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 61  ASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 110


>gi|145298724|ref|YP_001141565.1| flagellar motor protein MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851496|gb|ABO89817.1| Flagellar motor component MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 292

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 119/332 (35%), Gaps = 55/332 (16%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +  K    + P N   W + YADFMT+L A F+V++          + + Q F       
Sbjct: 1   MVAKKKKPEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGF------- 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
              S G     +PP  S   +    I E  ++ +                          
Sbjct: 54  -IESLGKIGLISPPAGSPVMQGGTGILEPESRTT-------------------------- 86

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-QDL 195
              S   +  L +D+        +  +  S         P  +KE+      K+ L Q L
Sbjct: 87  -PSSPDKETVLEKDAPTAAADPFNETIGASEKPSATEAWPHKTKEQEWVQVTKQTLNQQL 145

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             +I S           K +  E   + ++I I       +F   S+   P+ I ++ KI
Sbjct: 146 KAQIES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVHKI 191

Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKIS 313
             +LA+    + + GHTD S     + R NW LS+ RA S    +L    +   R+    
Sbjct: 192 AGILANIPGKVVVTGHTDNSQAPLELYRSNWELSVLRAASIVHIMLTDPKLDATRVIA-Q 250

Query: 314 GFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
           G A  + +  +D      ANRR++I +   + 
Sbjct: 251 GVADAQPRYPNDTAEHRQANRRVEITLSQGKA 282


>gi|152965627|ref|YP_001361411.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
 gi|151360144|gb|ABS03147.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
          Length = 342

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 118/313 (37%), Gaps = 67/313 (21%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN---LMTASKGIFDEQNP 89
           W + YAD +TVLMA F+V++ ++  D       +        +    ++ S GI +  N 
Sbjct: 23  WLVAYADMLTVLMALFIVLFALSQIDQLKFAQFKDGLTKGTSSSNQAVSGSAGILEATNG 82

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
                                      ++  +   Q +   +  +  + Q+   +  L  
Sbjct: 83  DMPIDITP-------------------NSTGQPLQQSVSTEVRKILQAAQTAQTQEDLKA 123

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
             E+ +D                                    +++AK+I + L+   A 
Sbjct: 124 AQEEVQDY-----------------------------------REIAKQIDAALT---AK 145

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
                V +  T  G+++ ++   +   F  +S+    +   VL  I  +LA     I+++
Sbjct: 146 GDQDQVTYRITSDGLVVGLV--ADNVFFANASAEVEEKGREVLDVIAPILAQLPNDIAVQ 203

Query: 270 GHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP 326
           GHT++         RDNW LS  RA +  Q    +G+  + +S  +G+A  R    + DP
Sbjct: 204 GHTNSLSLSATTRYRDNWDLSAARAMTVVQRFTAAGIPGNHLSG-TGYADSRPLYPNEDP 262

Query: 327 MN-SANRRIDILV 338
              + NRR+D++V
Sbjct: 263 KALTGNRRVDLVV 275


>gi|289548706|ref|YP_003473694.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
 gi|289182323|gb|ADC89567.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
          Length = 243

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +E      L +     ++  ++ Q + K+I      L    +   +       GI + + 
Sbjct: 63  QETLPRQILPQPVPPKVRPTEKGQKILKQIMELEKTLKTIGLEGKLKVAYEAIGIRLIL- 121

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288
             +   +FD  S+   P+   +L KI E+L      + + GHTD  P        NW LS
Sbjct: 122 --QERLLFDSGSADIKPQFYPILDKIAELLNSIPNPVEVEGHTDNIPISTGRFPSNWELS 179

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
             RA S  +  +  GVS DR+   SG+A  R   ++        NRR++I++ + +G
Sbjct: 180 TARASSVVRYFIAKGVSPDRLKA-SGYADTRPIASNATPEGREQNRRVEIVIINIKG 235



 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 30/94 (31%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                       W I YADF+T+L+  F+ ++ +            Q F       +   
Sbjct: 3   RRKKCPEEVSERWAIPYADFLTLLLCLFIALFAMAQAGKQAALEYAQAFARAFGMRLVPY 62

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           +     Q  P+            + I K  ++L+
Sbjct: 63  QETLPRQILPQPVPPKVRPTEKGQKILKQIMELE 96


>gi|310764847|gb|ADP09797.1| chemotaxis protein (motility protein B) [Erwinia sp. Ejp617]
          Length = 302

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMF 237
             +K+   K  + L+ +  ++ + +       N    +L   T  G++I I D +  PMF
Sbjct: 100 QVDKLDKFKNVESLKKVKTRLEAMIESDPRLSNFKSNLLLTLTDDGLVIQITDSQERPMF 159

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSA 295
              S  P      +LQ +  +L      +S+ GHTD+  +   +    NW LS  RA +A
Sbjct: 160 KTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWELSTGRANAA 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            +VL+ +G+ +D I ++ G             N  NRRI +L+  +
Sbjct: 220 RRVLVNAGLDDDHILRVIGTGSRMGLTDISADNPMNRRISVLILSK 265



 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 7/191 (3%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            II ++K       ++ G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF    
Sbjct: 6   PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           K  M         ++       + I       + K+ VD      N +   +        
Sbjct: 66  KPTMGQGNKTSFSESVIPGGGDDVIRQEG--EVFKHQVDKLDKFKNVESLKKVKTRLEAM 123

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           + +  +  + K++L         + + TD ++    +     P    + IL     + L 
Sbjct: 124 IESDPRLSNFKSNLLLTLTDDGLVIQITDSQERPMFKTGSESPESYMKGIL-----QALV 178

Query: 194 DLAKKISSTLS 204
            L K++ ++LS
Sbjct: 179 PLLKELPNSLS 189


>gi|197120112|ref|YP_002140539.1| chemotaxis protein MotB [Geobacter bemidjiensis Bem]
 gi|197089472|gb|ACH40743.1| chemotaxis MotB protein [Geobacter bemidjiensis Bem]
          Length = 254

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 109/330 (33%), Gaps = 86/330 (26%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K    +   N   W + YADF+T+L A F+ ++ ++ TD               + +
Sbjct: 1   MARKQKGHEKEPNHERWLVSYADFITLLFAVFVTLYAMSQTDKKK-----------AEEV 49

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           + + +  F   +    +    ID      I                              
Sbjct: 50  LQSMRESFGYSSTSAGAKPTVIDTGSMSVIP----------------------------- 80

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                   + LT+  ++GK      D   +    E Y L   ++ K              
Sbjct: 81  ------SMHRLTQAPQRGKSRGGEKDFRATKAAIEAYLLKVGAQAK-------------- 120

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
                             V    T  G+++S+   +    FD  S+    ++  +L+ + 
Sbjct: 121 ------------------VSVSVTPRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVV 159

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
             L+  +  I + GHTD  P  +     NW LS  RA +  Q L K       RIS  +G
Sbjct: 160 SSLSSYSNGIRVEGHTDNMPISSASFPSNWELSTARATNVLQYLTKQTDFDPYRISA-AG 218

Query: 315 FAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           +  +R     +       NRR+DI++   Q
Sbjct: 219 YGEYRPVADNSDAEGRGKNRRVDIVLLSEQ 248


>gi|83589323|ref|YP_429332.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83572237|gb|ABC18789.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 249

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 8/201 (3%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
              +  + +     L ++     +     +  L  +      A  +     +LA+  +  
Sbjct: 39  SDTNAQKMAALANSLAQTLTGAPTTGILTSGGLTSIVPGIAPAPGQGDEGAELARARAEL 98

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              +  + +   V   T   G+++S+ D     +F K S+   PE   +L+++G  LA  
Sbjct: 99  QQYIQQEGLESQVTLNTEERGLVVSVAD---AVLFPKGSADLTPEARDLLRQVGRALARL 155

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRL 320
              + + GHTD  P        NW LS  RA +  +VL+ ++G+  +R+S  +G+  +R 
Sbjct: 156 PNYLRVEGHTDNLPINTPAFPSNWELSTARATNVVKVLISEAGIKPERLSA-TGYGEYRP 214

Query: 321 KIASDPMN--SANRRIDILVE 339
              ++     + NRR+DI+V 
Sbjct: 215 VAPNNSEADMARNRRVDIVVL 235


>gi|259907647|ref|YP_002648003.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96]
 gi|224963269|emb|CAX54753.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96]
 gi|283477490|emb|CAY73406.1| Chemotaxis protein motB (Motility protein B) [Erwinia pyrifoliae
           DSM 12163]
          Length = 302

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISII 229
           +   +     +K+   K  + L+ +   + + +       N    +L   T  G++I I 
Sbjct: 92  QEGEVSKYQVDKLDKFKNVESLKKVKTHLEAMIESDPRLSNFKSNLLLTLTDDGLMIQIT 151

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRL 287
           D +  PMF   S  P      +LQ +  +L      +S+ GHTD+  +   +    NW L
Sbjct: 152 DSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWEL 211

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           S  RA +A +VL+ +G+ +D I ++ G             N  NRRI ILV  +
Sbjct: 212 STGRANAARRVLVNAGLGDDHILRVIGTGSRMGLTDISADNPMNRRISILVLSK 265



 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 7/191 (3%)

Query: 14  FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            II ++K       ++ G+WKI YADFMT +MAFFLVMW++ ++ D  ++ I  YF    
Sbjct: 6   PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           K  M         ++       + I       ++K  VD      N +   +   +    
Sbjct: 66  KPTMGQGNKTSFSESVIPGGGDDVIRQEG--EVSKYQVDKLDKFKNVESLKKVKTHLEAM 123

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           + +  +  + K++L         + + TD ++    +     P    + IL     + L 
Sbjct: 124 IESDPRLSNFKSNLLLTLTDDGLMIQITDSQERPMFKTGSESPESYMKGIL-----QALV 178

Query: 194 DLAKKISSTLS 204
            L K++ ++LS
Sbjct: 179 PLLKELPNSLS 189


>gi|311992350|gb|ADQ26748.1| flagellar stator protein [Aeromonas hydrophila]
          Length = 291

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 112/328 (34%), Gaps = 53/328 (16%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    + P N   W + YADFMT+L A F+V++          + + Q            
Sbjct: 3   KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQ------------ 50

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G  +        S       +         + K   ++ KK+    ++     S+   
Sbjct: 51  --GFIESLGKIGLISPAAGSPVMQGGTGILEPESKTTPSSPKKETVLEKDAPMAASDPFN 108

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                +     +E      K  +                     + + +KK  Q L  +I
Sbjct: 109 ETIGASEKPSATESWPHKTKEQE--------------------WVQVTKKKLEQQLKAQI 148

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S           K +  E   + ++I I       +F   S+   P+ I ++ KI  +L
Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKISGIL 194

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAH 317
           A     + + GHTD +     + R NW LS+ R A   + +L    +   R+    G A 
Sbjct: 195 ADIPGKVVVTGHTDNSQAPVELYRSNWELSVLRSASIVHTLLTNPKLDATRVIA-QGVAD 253

Query: 318 HRLKIASDPM--NSANRRIDILVEDRQG 343
            + +  +D      ANRR++I +   + 
Sbjct: 254 AQPRYPNDTAEHRQANRRVEITLSQGKA 281


>gi|330830039|ref|YP_004392991.1| chemotaxis protein MotB [Aeromonas veronii B565]
 gi|328805175|gb|AEB50374.1| Chemotaxis protein MotB [Aeromonas veronii B565]
          Length = 291

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 121/327 (37%), Gaps = 51/327 (15%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    + P N   W + YADFMT+L A F+V++          + + Q F          
Sbjct: 3   KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGF--------IE 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S G     +PP  S   +    I E  +K +       T  +K      ++ F  +    
Sbjct: 55  SLGKIGLISPPAGSPLMQGGTGILEPESKTTPSSPKEETVLEKDAPMAASDPFNETIGAS 114

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +                                +     +++ + + ++K  Q L  +I
Sbjct: 115 EKPSAT--------------------------EAWPHKTQEQEWVQVTKQKLEQQLKAQI 148

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S           K +  E   + ++I I       +F   S+   P+ I ++ KI  +L
Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKIAGIL 194

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A+    + + GHTD +     + R+NW LS+ RA S  Q ++ +   + R     G A  
Sbjct: 195 ANIPGQVVVTGHTDNSQAPVELYRNNWELSVLRASSIVQTMLTNPQLDARRVIAQGVADT 254

Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343
           + + A+D      ANRR+DI +   + 
Sbjct: 255 QPRFANDTPEHRQANRRVDITLSQGKA 281


>gi|117619885|ref|YP_856319.1| flagellar motor protein MotB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561292|gb|ABK38240.1| chemotaxis protein MotB [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 291

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 112/328 (34%), Gaps = 53/328 (16%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    + P N   W + YADFMT+L A F+V++          + + Q            
Sbjct: 3   KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQ------------ 50

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G  +        S       +         + K   ++ KK+    ++     S+   
Sbjct: 51  --GFIESLGKIGLISPAAGSPVMQGGTGILEPESKTTPSSPKKETVLEKDAPMAASDPFN 108

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                +     +E      K  +                     + + +KK  Q L  +I
Sbjct: 109 ETIGASEKPSATESWPHKTKEQE--------------------WVQVTKKKLEQQLKAQI 148

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S           K +  E   + ++I I       +F   S+   P+ I ++ KI  +L
Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKISGIL 194

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAH 317
           A     + + GHTD +     + R NW LS+ R A   + +L    +   R+    G A 
Sbjct: 195 ADIPGKVVVTGHTDNSQAPVELYRSNWELSVLRSASIVHTLLTNPKLDATRVIA-QGVAD 253

Query: 318 HRLKIASDP--MNSANRRIDILVEDRQG 343
            + +  +D      ANRR++I +   + 
Sbjct: 254 AQPRYPNDTPEHRQANRRVEITLSQGKA 281


>gi|167574625|ref|ZP_02367499.1| Chemotaxis lafU protein [Burkholderia oklahomensis C6786]
          Length = 303

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               P  +KE+   +   +  + LA +I +  + L  D     V       G+ ++I D 
Sbjct: 97  RAPEPADAKERDDTIDTLEARRKLAARIRAEANALGMDG---NVDVAINDDGVRVTIHDS 153

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSL 289
               MF + S +   +   +L+ +  VL+  T  + I GHTDA+ +       +NW LS 
Sbjct: 154 SEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASVFSNNWSLSS 213

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            RA  A Q L+  G+ E ++ ++SG       +  DP +  NRR+++L+   Q 
Sbjct: 214 RRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLLLTSQA 267



 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           + N++      I K+          G+WK+ +ADF   LMA F+V+W++N T +D ++ +
Sbjct: 2   NPNRDAGHGPTIIKRAGRHHEEGGGGAWKVAFADFTLALMALFMVLWVMNVTPEDERRRV 61

Query: 66  EQYFNPFGKNLMTASKGIFDEQN------PPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
                  GK +     GIF++++      P +   + +     D     +++D       
Sbjct: 62  AAEI--AGKPIFEGGVGIFEQRSRKLVLVPHDELPRGRAPEPADAKERDDTIDTLEARRK 119

Query: 120 QKKQYQRLENNIFYLSN---SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
              + +   N +    N   +   +  + ++   SEKG    +S  L+   +       P
Sbjct: 120 LAARIRAEANALGMDGNVDVAINDDGVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAP 179

Query: 177 PLSK 180
            LS 
Sbjct: 180 VLSS 183


>gi|319653376|ref|ZP_08007476.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2]
 gi|317394860|gb|EFV75598.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2]
          Length = 265

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 122/330 (36%), Gaps = 74/330 (22%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++K       +   SW + YAD +T+L+A F+V++ +++ D        Q F    K   
Sbjct: 3   RRKKKQHHEEHVDESWLLPYADLLTLLLALFIVLFAMSSVD-------AQKFQKLSKAFN 55

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G                                                  +   S
Sbjct: 56  DVFSG----------------------------------------------GTGVFEFPS 69

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              E    S    SEK            S + EE   +  L KEK+     ++ L +L +
Sbjct: 70  PMPEGQMQSTDAVSEKP-----------SKDLEEMAAMDELEKEKLKQAADQEELAELQQ 118

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++++ +      N+   +    T  G+L+SI D     +F   S+    + + +  +I E
Sbjct: 119 RVNAFIEN---QNLADKLETSLTTEGLLVSIRDN---VLFGSGSAEVREQDLNMASEIAE 172

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L       I I GHTD  P RN +   NW LS+ RA +  ++++K+   + +     GF
Sbjct: 173 LLIMDPPRNIIISGHTDNVPIRNSSFESNWELSVMRAVNFMKIILKNDQLDPKWFSAKGF 232

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343
              +    ++     + NRR++IL+  R G
Sbjct: 233 GEFQPVAGNNTKEGRAKNRRVEILILPRTG 262


>gi|258513971|ref|YP_003190193.1| OmpA/MotB domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777676|gb|ACV61570.1| OmpA/MotB domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 275

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
              +  E+   PP+  ++I   K  ++L++L K++   +      N+   +L      G+
Sbjct: 67  AGPSAIESNPSPPIQVQQI--QKEAEQLKELQKELHDLIE---KKNLTGHILVSIEERGL 121

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARD 283
           ++S +D     +F   S+   P+   ++Q++G++L  S   I I GHTD  P        
Sbjct: 122 VVSFLDP---VLFPLGSAQLTPKAKNIVQEVGQILLKSDNYIRIEGHTDDIPINTAIYPS 178

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           NW LS  RA S  Q L+K+     +R++  +G+  +R ++ +D M+    NRR+DI+V  
Sbjct: 179 NWELSAARATSVVQELIKTMSFPPERLAA-TGYGEYRPRVPNDSMDHKQMNRRVDIVVVR 237

Query: 341 RQ 342
            +
Sbjct: 238 SK 239



 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GK 74
           + +K        N   W I Y+D +T+LM FF++M+ ++   +    A+    +    G 
Sbjct: 1   MSRKRKGKAEKENGERWLITYSDLITLLMIFFIIMFAMSEISNQKFVAMASSLSIALGGS 60

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
             +    G    ++ P    Q +      E + +   +L 
Sbjct: 61  EHILPGAGPSAIESNPSPPIQVQQIQKEAEQLKELQKELH 100


>gi|167567201|ref|ZP_02360117.1| Chemotaxis lafU protein [Burkholderia oklahomensis EO147]
          Length = 303

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               P  +KE+   +   +  + LA +I +  + L  D     V       G+ ++I D 
Sbjct: 97  RAPEPADAKERDDTIDTLEARRKLAARIRAEANALGMDG---NVDVAINDDGVRVTIHDS 153

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSL 289
               MF + S +   +   +L+ +  VL+  T  + I GHTDA+ +   +   +NW LS 
Sbjct: 154 SEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASVFSNNWSLSS 213

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            RA  A Q L+  G+ E ++ ++SG       +  DP +  NRR+++L+   Q 
Sbjct: 214 RRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLLLTSQA 267



 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 6   DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           + N++      I K+          G+WK+ +ADF   LMA F+V+W++N T +D ++ +
Sbjct: 2   NPNRDAGHGPTIIKRAGRHHEEGGGGAWKVAFADFTLALMALFMVLWVMNVTPEDERRRV 61

Query: 66  EQYFNPFGKNLMTASKGIFDEQN------PPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
                  G+ +     GIF++++      P +   + +     D     +++D       
Sbjct: 62  AAEI--AGQPIFEGGVGIFEQRSRKLVLVPHDELPRGRAPEPADAKERDDTIDTLEARRK 119

Query: 120 QKKQYQRLENNIFYLSN---SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
              + +   N +    N   +   +  + ++   SEKG    +S  L+   +       P
Sbjct: 120 LAARIRAEANALGMDGNVDVAINDDGVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAP 179

Query: 177 PLSK 180
            LS 
Sbjct: 180 VLSS 183


>gi|119476294|ref|ZP_01616645.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
 gi|119450158|gb|EAW31393.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
          Length = 344

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 74/324 (22%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++++  D   ++   W + YADF+T+L AFF+VM+ I+  ++   K + Q  +       
Sbjct: 3   RRRIVEDSVSHD--RWLVSYADFITLLFAFFVVMYSISQVNEGKYKVLSQTLSE------ 54

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                +F  Q P                      +  +         +    +   L   
Sbjct: 55  -----VFARQGP-------------------GVPERTLDPFQIGDVVKSNPQSFIELEAE 90

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              ++  +S    SE+G                                      + + +
Sbjct: 91  NDGDNSGSSANEQSERG--------------------------------ALPAEFEQINQ 118

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI   L GL+  N    V    +   + + +   +++ +F    S      + VL+ I  
Sbjct: 119 KIDEALGGLLKSN---QVTVRGSEKWLEVEL---KSSLLFGSGDSTLSVPAVGVLESIAS 172

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L   T  I + G TD  P  ++    NW LS  RA +  +  ++ G+S DR++ I G+ 
Sbjct: 173 ILKDQTNPIRVEGFTDNQPINSVRYPSNWELSAGRASAVVKFFIEEGLSADRLAAI-GYG 231

Query: 317 HHRLKIASD--PMNSANRRIDILV 338
            H+    +D     + NRR+ +++
Sbjct: 232 EHQPVTDNDSEEGRAENRRVVLMI 255


>gi|94500541|ref|ZP_01307072.1| motility protein, MotA family protein [Oceanobacter sp. RED65]
 gi|94427331|gb|EAT12310.1| motility protein, MotA family protein [Oceanobacter sp. RED65]
          Length = 336

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 2/227 (0%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            N   Q +      ++   +   +  K       + G       ++  S   +    L  
Sbjct: 47  INSSNQEEIEAVAGYFNDPAAYEDGNKVPSKWVIDLGGSPSVQDNVAVSETVDPTKVLQA 106

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
              E       + RL+ L  ++   + +          +  + TR G+ I I+D+ N PM
Sbjct: 107 EEIESAAEAIERARLESLQSEVMDKINASATLTPYKDQLKVDITREGLRIQIVDKTNRPM 166

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA 295
           F+  SS        +L ++  +L      ISI GHTD+S   N     NW LS  RA +A
Sbjct: 167 FNPGSSRLKYYAEDILYEMAPILQAVPNRISITGHTDSSGSANPWDTGNWELSAGRANAA 226

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            + L  +G+  ++I+++ G          DP +  NRRI I+V +++
Sbjct: 227 RRALADAGLDSEKIAQVVGMGDKAHFNIEDPTDPVNRRIAIVVLNKR 273


>gi|189423111|ref|YP_001950288.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189419370|gb|ACD93768.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 271

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 107/326 (32%), Gaps = 66/326 (20%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               +   N   W + YADF+T+L A F+ M+ ++ TD    + +               
Sbjct: 4   KKEPEKHANHERWLVSYADFITLLFAVFVTMYAMSQTDKKKVEEVAAAMR---------- 53

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
                                              G + Q    QR       +      
Sbjct: 54  --------------------------------ESFGYSTQAAAGQRGVLQSQDIKPIPAI 81

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           +     +   ++      +   ++K   K +                 +K  +++   I 
Sbjct: 82  KPEMAVIPMINKMPPAGPRQGGMDKGRGKTK---------------AEEKEFKEIQSAIE 126

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + L   +       V    TR G+++S+   +    FD  S++  P    +L  I E + 
Sbjct: 127 AYL---IKHGAQNKVSIGITRRGLVVSL---KEAGFFDSGSAVIKPAGYQLLNTILEAMT 180

Query: 261 HSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             +  + + GHTD  P    +   NW LS+ RA +  + L K+   E      +G+   R
Sbjct: 181 QYSNPLRVEGHTDNIPISTPLFPSNWELSVSRATNVLRYLQKNYDVEPGKLSATGYGEFR 240

Query: 320 L--KIASDPMNSANRRIDILVEDRQG 343
              + ++    S NRR+DI++     
Sbjct: 241 PTAENSTPEGRSKNRRVDIVLLSGDA 266


>gi|292492681|ref|YP_003528120.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291581276|gb|ADE15733.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 282

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 93/321 (28%), Gaps = 71/321 (22%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             +  +   +W I  AD M++LM+FF+++   +  D    K +                 
Sbjct: 12  PQEEKSGAPAWVITLADLMSLLMSFFVLLLSFSELDLQKYKQVAGSM------------- 58

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                         K    +   I             Q+    R     +        + 
Sbjct: 59  --------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWDEIRQDTIDE 104

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K +L     + +D                                         ++ + 
Sbjct: 105 TKQTLDFSEARIRDTEAK-----------------------------------VAELQNM 129

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   +   +   ++ E     I+I I   +    F   S+    +   VL K+  VL   
Sbjct: 130 LQNEIDQGL---IVLERIGEQIIIRI---QEKGSFPSGSASFNQDFKPVLDKLRTVLNRI 183

Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD  P   +  R NW LS  RA S    L  +     +   I G A  +  
Sbjct: 184 EGKIVVAGHTDDLPIHTSRFRSNWELSTARAVSVIHHLFATDEIAPQRFVIEGHADTQPL 243

Query: 322 IASDPMNSA--NRRIDILVED 340
             +D   +   NRRI+I +  
Sbjct: 244 APNDTAENRVHNRRIEITIMP 264


>gi|297618036|ref|YP_003703195.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145873|gb|ADI02630.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 258

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +  L+ + K+++  +     + +   ++      G++IS+ D     +F K S +  P  
Sbjct: 96  QGNLEAIEKQLAEYIKS--EEGLAGNIVLMEQERGLVISLKDT---LLFPKGSDVLTPRA 150

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSE 306
             +++K+GE L      + + GHTD  P        NW LS+ RA +   VL    G+  
Sbjct: 151 HEIIRKVGESLKTIPNYVRVEGHTDDLPINTPKFPSNWELSVLRATNVVHVLAGEVGIPP 210

Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           DR+S  +G+  +R  + +D  P  + NRR+DI++  ++
Sbjct: 211 DRLSA-TGYGEYRPLMPNDSEPNRAMNRRVDIVILKQK 247



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KK+    +   ++  W + Y+D +T+LM FF+VM+ ++  D    +A+    N     L 
Sbjct: 6   KKEQEGGEGGPSMERWLLTYSDLITLLMIFFVVMYTMSQVDAQKFQALA---NSLSMVLS 62

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             S  I +   P     ++   +   +  T            Q  +Y + E  +      
Sbjct: 63  GKSISIMETPGPSVVEGRSGQIIREGQGDTPTLQGNLEAIEKQLAEYIKSEEGLAGNIVL 122

Query: 138 QQSEHC 143
            + E  
Sbjct: 123 MEQERG 128


>gi|167725893|ref|ZP_02409129.1| chemotaxis LafU protein [Burkholderia pseudomallei DM98]
 gi|167905052|ref|ZP_02492257.1| chemotaxis LafU protein [Burkholderia pseudomallei NCTC 13177]
          Length = 271

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 9/220 (4%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +      ++ +       R    G          K +    +   P   + +     R++
Sbjct: 10  MNVTPEKERKQVAAEIAGRPFFDGGVGIFEQRSRKPVVAPFDAQQPDRMRRRTSGAARER 69

Query: 191 RLQDLAKKISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            +  L ++    L+  + D   +      V       G+ I+I D     MF++ S    
Sbjct: 70  TIDSLQQR--RALAARIMDEASRLGMDGNVATAINDDGVRITIHDSDKQGMFERRSDALN 127

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303
           P  I +L  +  VL   T  + I GHTDA+ +   ++  +NW LS  RA  A QVL   G
Sbjct: 128 PPFIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGG 187

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +   R+ +ISG       +  +P +  NRR+++L+   + 
Sbjct: 188 MDAQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 227


>gi|169831941|ref|YP_001717923.1| OmpA/MotB domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638785|gb|ACA60291.1| OmpA/MotB domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 257

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 12/205 (5%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +   ++       +G  L ++ D     ++      P    +  +       L  +A   
Sbjct: 50  AALARSLHHALGGQGSVLIEAPDASLGPDE----RFPMELDKGFVKSSDTAFLAQMAPVQ 105

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                 +    +   +   T   G++ISI D     +F   S+   P    ++ K+G +L
Sbjct: 106 KQVQELMEEAGLTAHIEMTTEERGLVISIQDT---VLFATGSADLTPTAREIMDKLGLIL 162

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
             +   I I GHTD  P        NW LS  R+ S  + L+       +R+S  +G+  
Sbjct: 163 LQTPNYIRIEGHTDNVPINTPRFPSNWELSAARSTSVVRYLIARHNFPPERLSA-TGYGE 221

Query: 318 HRLKIASDP--MNSANRRIDILVED 340
           +R +  +D       NRR+D +V  
Sbjct: 222 YRPRDTNDTAQGRQRNRRVDFVVLS 246



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+TVL+ FF+V++ ++  D     A+ +  +       +      D    P+ 
Sbjct: 20  WVLPYADFVTVLLCFFIVLYSLSTIDAHKFAALARSLHHALGGQGSVLIEAPDASLGPDE 79

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
               ++D    +      +        Q ++         ++  + +      S+   
Sbjct: 80  RFPMELDKGFVKSSDTAFLAQMAPVQKQVQELMEEAGLTAHIEMTTEERGLVISIQDT 137


>gi|332669204|ref|YP_004452212.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332338242|gb|AEE44825.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484]
          Length = 301

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 52/320 (16%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           ++   N   W + Y+D +TVLMA F+V++ I+  D +   A+         +  T+   +
Sbjct: 15  EEEHVNHERWLVSYSDMITVLMALFIVLFAISQVDQEKYIALRDSLAAGFMDTTTSPSVL 74

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
                  +  S    +   D      S D  +G                 +  +  +   
Sbjct: 75  DGTDGTLDGKSTQSENTPADGTAGMVSADDGLGQQAAVPPVPATPTTDASVDPATLAAAQ 134

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +                                             L +L  +I+  L
Sbjct: 135 AEAAH-------------------------------------------LTELRDRIAQAL 151

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +   A+ + + V       G+++ ++   +   F  + +        VL     ++    
Sbjct: 152 A---ANGLDQAVRMRIDERGLVLGLV--ADDVFFAPARAELTDTARRVLDVASPLIVGIG 206

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322
           E +S+ GH +  P       NW LS DRA    + L++  G+   RI  + GF   R  +
Sbjct: 207 ENVSVEGHANVIPVSGRYPTNWELSADRATQVLRHLVEVDGMPGPRIMAV-GFGDTRPLV 265

Query: 323 ASD-PMN-SANRRIDILVED 340
           A D P   +ANRR+D+++  
Sbjct: 266 AGDSPEALAANRRVDLVILS 285


>gi|302872092|ref|YP_003840728.1| OmpA/MotB domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574951|gb|ADL42742.1| OmpA/MotB domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 257

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
               R+   ++L   I   + GL+ ++ ++G VL      G+ I + D     +FD  S+
Sbjct: 90  ATKNRQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299
              P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L
Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             S V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 206 RVSKVKPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|188586029|ref|YP_001917574.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350716|gb|ACB84986.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 269

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            +    I +E+     P   E+ +  + ++ ++D+  ++   +      ++ + V+ ET 
Sbjct: 68  PEHRAQIPREDPNITLPEPSERQVPSEEEQMMEDIYDQLEDYIE---DADLAEVVMLETE 124

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             GI+I   D     +FD   +    E++ +L  I E+L      I + G TD  P    
Sbjct: 125 ERGIVIRFQD---KILFDSGRAELRSESLEILGDIAEILEEIPNEIKVEGFTDDVPIDTP 181

Query: 281 A-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
               NW LS  RA +  + L  + G+   R+ + +G+  +R  + +D       NRR+DI
Sbjct: 182 EFPSNWELSAARATTVLRYLSEEGGLDPGRL-QATGYGEYRPMVPNDSPENRQLNRRVDI 240

Query: 337 LVE 339
            V 
Sbjct: 241 TVL 243


>gi|329928770|ref|ZP_08282619.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5]
 gi|328937551|gb|EGG33969.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5]
          Length = 271

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 112/320 (35%), Gaps = 70/320 (21%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
                  W I YAD +T+L+ FF+VM+ ++  D +  K + Q      +    +   I +
Sbjct: 15  EGEQRDRWMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSL----QATFQSGDSILE 70

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             +                                             ++ +  +E+ KN
Sbjct: 71  MGS--------------------------------------------GITGTADTENHKN 86

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
              + +   +   K T  E            PL++ ++    +++ L +    I   +  
Sbjct: 87  PPPKPAADEEGEDKDTGQE------------PLTERELAFRAQEEELANFMGLIQQYVK- 133

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
              + + + +       GI I++ D     +FD   +   P    VL K+  +       
Sbjct: 134 --DNQLEEDIFISDEPQGIAITLSD---RFLFDVGKAELKPGAAPVLGKLASLFGDLNTT 188

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +SI GHTD  P    +  +DNW LS  RA S  +  ++    +    + +G+A  R    
Sbjct: 189 VSIEGHTDNVPIGRYSSYKDNWELSGARAMSVLRFFLEHSKLDPGGFQYAGYADTRPAAD 248

Query: 324 SDPMN--SANRRIDILVEDR 341
           +        NRR++I V  +
Sbjct: 249 NATAEGKQKNRRVEITVLRQ 268


>gi|78043824|ref|YP_359811.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995939|gb|ABB14838.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 266

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 10/190 (5%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRK--KRLQDLAKKISSTLSGLVADNIVKGVL 216
              D+    N      L   S+E++ A+  K  K   +LA   +   S + A  +   V 
Sbjct: 66  AGPDVVTGSNATVQGNLGKASQEQLPAVDEKDLKETANLALIKAKVDSYIKAKGLNASVT 125

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G++IS  D     +F   S+   P+   ++++IGE+L      I I GHTD  P
Sbjct: 126 ATLEERGVVISFKD---AILFKLGSAELTPQAKAIVRQIGEILLPLPNYIRIEGHTDNLP 182

Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
              +    NW LS  RA S    L+        R+S + G+  +R K+ +  +     NR
Sbjct: 183 INTSRFPSNWELSTARATSVVHELIDGLHFPPYRLSAV-GYGEYRPKVPNTSEQNRQKNR 241

Query: 333 RIDILVEDRQ 342
           R+DI++   +
Sbjct: 242 RVDIVILRSK 251


>gi|312793260|ref|YP_004026183.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180400|gb|ADQ40570.1| OmpA/MotB domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 257

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
               ++   ++L   I   + GL+ ++ ++G VL      G+ I + D     +FD  S+
Sbjct: 90  ATKNKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299
              P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L
Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             S V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|119503684|ref|ZP_01625767.1| Flagellar motor protein [marine gamma proteobacterium HTCC2080]
 gi|119460746|gb|EAW41838.1| Flagellar motor protein [marine gamma proteobacterium HTCC2080]
          Length = 312

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 103/320 (32%), Gaps = 53/320 (16%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           D  P    +W   +AD M++LM FF+++   +  D    K I                  
Sbjct: 8   DSGPAGSPAWMATFADLMSLLMCFFVIILSFSELDVIKYKQIAASM-------------- 53

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
                        K    + + +   ++         + Q    E           ++  
Sbjct: 54  -------------KNAFGVQQKMEITAIPKGTSVVATEFQPGIPEPTPLERIEQVTTDQD 100

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
            NSL   +   ++       +    + E          ++L    K  ++          
Sbjct: 101 LNSLRIGNPDARETEAREVKDLITEEMEMLIEETELDAEMLRRLLKAEIE---------- 150

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                      +  E+    I+I I   R    F   S+      + VL K G  L    
Sbjct: 151 --------AGQIDVESEGRTIVIRI---REKGSFPSGSAQLDIGFLEVLDKTGFALNEIK 199

Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
            +I I GHTD  P        NW LS  R+ +  + L+    +   R++ ISG A  R +
Sbjct: 200 GLIFIEGHTDNVPINTARYGSNWDLSAARSVAVAERLLDGPKMDPIRLT-ISGHADTRPQ 258

Query: 322 IASD--PMNSANRRIDILVE 339
             +      + NRR++++V+
Sbjct: 259 APNQSWEGRAQNRRVEVVVK 278


>gi|312877226|ref|ZP_07737195.1| OmpA/MotB domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796035|gb|EFR12395.1| OmpA/MotB domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 257

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
               ++   ++L   I   + GL+ ++ ++G VL      G+ I + D     +FD  S+
Sbjct: 90  ATKNKQMTEEELINDIQKQILGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299
              P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L
Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             S V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|304317567|ref|YP_003852712.1| OmpA/MotB domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779069|gb|ADL69628.1| OmpA/MotB domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 240

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIID 230
           NY +   S   IL   +          I S L  L+  N ++ ++  +    G +IS+ D
Sbjct: 61  NYVVGQYSGNSILDSIKTTNNTSTDNTIESQLDKLIKQNNLQNMVTYKVDERGFVISLND 120

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +FD  S+   P+    L KIG +L      I + G+TD  P  N     NW LS+
Sbjct: 121 T---LLFDTGSADVKPDQKATLIKIGNILKAMPNYIRVEGYTDNVPINNSQFHSNWELSV 177

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            RA +  ++L+    +   +IS + G+  +R  + +D       NRR+DI++ +
Sbjct: 178 IRATNVVEILVNDVKIDPAKISAV-GYGEYRPIVPNDSDKNRQLNRRVDIVIMN 230



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          +++    D+   N   W + Y+D +T+LM FF+V++ I+  +    + I    
Sbjct: 1  MRRFDDNDEKKVNNERWLLTYSDMITLLMIFFIVLYTISTVNSQKFQQIAASL 53


>gi|222529065|ref|YP_002572947.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|312622679|ref|YP_004024292.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222455912|gb|ACM60174.1| OmpA/MotB domain protein [Caldicellulosiruptor bescii DSM 6725]
 gi|312203146|gb|ADQ46473.1| OmpA/MotB domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 257

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242
               ++   ++L   I   + GL+ ++ ++G VL      G+ I + D     +FD  S+
Sbjct: 90  ATKNKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299
              P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L
Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             S V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|312127873|ref|YP_003992747.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777892|gb|ADQ07378.1| OmpA/MotB domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 257

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 11/160 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            ++   ++L   I   + GL+ ++ ++G VL      G+ I + D     +FD  S+   
Sbjct: 93  NKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSAKLT 148

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302
           P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L  S
Sbjct: 149 PQAKGVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEILRVS 208

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 209 KVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|308071044|ref|YP_003872649.1| flagellar motor protein [Paenibacillus polymyxa E681]
 gi|305860323|gb|ADM72111.1| Flagellar motor protein [Paenibacillus polymyxa E681]
          Length = 271

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 116/320 (36%), Gaps = 75/320 (23%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           +   W I YAD +T+L+ FF+VM+ +++ D      + Q      ++       I ++ +
Sbjct: 17  HRDRWMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSL----QDTFHKGDSILEQGS 72

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                    I  + D + +KN    K  + ++K+                          
Sbjct: 73  --------GITGTADRYTSKNPPTTKQPAADKKEAGS----------------------- 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                     K T+ E++   +E                  K LQ+L   I   ++    
Sbjct: 102 ---------TKLTEREQAFRTQE------------------KELQNLMGVIQEYIT---D 131

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           + +   +       GI+I++ D     +FD+  +     +   L K+  +       ISI
Sbjct: 132 NKLENQIFVSDQPRGIVITLND---RFLFDQGRAALKQGSANTLSKLASLFRDLKTPISI 188

Query: 269 RGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321
            GHTD  PF      +  +DNW LS  RA S  +  +          + +G+A  R    
Sbjct: 189 EGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFLDREQLSPSGFQYAGYADTRPVGD 248

Query: 322 IASDPMNSANRRIDILVEDR 341
            +++     NRR++I V  +
Sbjct: 249 NSTEAGRQKNRRVEITVLRQ 268


>gi|170737030|ref|YP_001778290.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169819218|gb|ACA93800.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 340

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 7/220 (3%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
              +           E      +           +  L+ ++            K     
Sbjct: 77  SARDEETRRKMDAMVESALYDDSDMLAGAPLGPNTHALQDTLASHVAVDEAGEVKRGQPM 136

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              ++ +  LA+++           ++  V    T  G+ + + D     +F    ++P 
Sbjct: 137 ADSREAMDVLAERVRKLGK---DAGVLDNVQAIVTPMGLRVMLHDTEKRGVFVSGGAVPS 193

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKS 302
                +L K+G ++      + + GHTD+ P+RN    +R NW LS+DRA SA   +++ 
Sbjct: 194 EPFRPMLIKLGALMGSIGNPLFVMGHTDSVPYRNSDSGSRSNWDLSVDRAMSARSWVLQG 253

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           GV+ +++ ++ G A     + ++P  + NRRI+ LV   +
Sbjct: 254 GVNSEQVMQVIGMADRAPLV-NNPRAAINRRIEFLVLTPE 292



 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 34/51 (66%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          +I+K+ +  D   ++ G WK+ +ADF   L+  F+++W ++A D++T++ +
Sbjct: 37 LIVKRPLRRDYDDDHDGGWKVAFADFCLALLCVFMLLWALSARDEETRRKM 87


>gi|332294873|ref|YP_004436796.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332177976|gb|AEE13665.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 243

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL--QDLAKK 198
                + ++ +   + L ++      +++  +    P S  +   +     L  Q+ + K
Sbjct: 44  SMATINASKFAATAQALREAFGGYTILDRGSSVIGEPGSTTQSAPVVPDSALKAQEASLK 103

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I+  L   +  N    +    T  G LISI+   +  +FD   +   P+   +L KI  V
Sbjct: 104 IAEILRQSLNPNQFSVI---QTERGYLISIL--TDKILFDSGKANLKPDAFPLLTKIAAV 158

Query: 259 LAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L      + + GHTD  P   +    NW LS  RA S  +  ++ G+S  R+  I+G+A 
Sbjct: 159 LKKIDNEVYVEGHTDNVPIHTVEFPSNWELSAARAASVAKYFIEQGISPSRLV-IAGYAD 217

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
            R   ++D       NRRIDIL+  +
Sbjct: 218 TRPVASNDTPQGRQKNRRIDILITKK 243



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLMTASKG 82
                   W + Y+D +T+LMAFF++++ +   +     A  Q       G  ++     
Sbjct: 16  HDSAGGMRWLLTYSDMITLLMAFFILLFSMATINASKFAATAQALREAFGGYTILDRGSS 75

Query: 83  IFDEQNPPERSSQNKIDLSIDEH 105
           +  E     +S+    D ++   
Sbjct: 76  VIGEPGSTTQSAPVVPDSALKAQ 98


>gi|114799250|ref|YP_759621.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444]
 gi|114739424|gb|ABI77549.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444]
          Length = 226

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A    + +   A+ ++            + V   +  TG+ I ++D    P+F+  S   
Sbjct: 69  AFHSDQAVSGAAELLALLRQSEGLKAAGESVQLSSDATGVRIELVDTAGRPLFETGSGAL 128

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             +   ++Q     L+     +SI GHTDA      A  NW LS  RA  A + L  +G 
Sbjct: 129 TADGAALIQAAAMSLSGLPYALSIEGHTDAFSMTGAASSNWELSSQRANEARRALEMAGF 188

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             DR+  ++G+A  R   A  P  +ANRRI + V
Sbjct: 189 GTDRVKAVTGYADTRPLNAGQPHLAANRRISLQV 222



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          G+WK+ YADF+T L+AFF++MW+++    + +  I   F 
Sbjct: 23 GTWKLAYADFLTALVAFFMLMWLVSGVSKEDRAVIASEFT 62


>gi|310644267|ref|YP_003949026.1| ompa/motb domain protein [Paenibacillus polymyxa SC2]
 gi|309249218|gb|ADO58785.1| OmpA/MotB domain protein [Paenibacillus polymyxa SC2]
          Length = 271

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 117/316 (37%), Gaps = 75/316 (23%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+ FF+VM+ +++ D      + Q      ++       I ++ +    
Sbjct: 21  WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSL----QDTFHKGDSILEQGS---- 72

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                I  + D + +KN    K  ++N+K+                              
Sbjct: 73  ----GITGTADRYTSKNPPATKQPASNKKEAGS--------------------------- 101

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                 K T+ E++  K+E                  K LQ+L   I   ++    + + 
Sbjct: 102 -----TKLTEREQAFRKQE------------------KELQNLMGVIQEYIT---DNKLQ 135

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +       GI+I++ D     +FD+  +     +   L K+  +       ISI GHT
Sbjct: 136 NQIFVSDQPRGIVITLND---RFLFDQGRAALKQGSANTLSKLASLFRDLKTPISIEGHT 192

Query: 273 DASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325
           D  PF      +  +DNW LS  RA S  +  +          + +G+A  R     +++
Sbjct: 193 DNIPFTRSSNSSTYKDNWELSGARALSVLRFFIDREQLSPSGFQYAGYADTRPVGDNSTE 252

Query: 326 PMNSANRRIDILVEDR 341
                NRR++I V  +
Sbjct: 253 AGRQKNRRVEITVLRQ 268


>gi|20807043|ref|NP_622214.1| flagellar motor protein [Thermoanaerobacter tengcongensis MB4]
 gi|254479612|ref|ZP_05092920.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20515530|gb|AAM23818.1| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4]
 gi|214034455|gb|EEB75221.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 237

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIID 230
           NY L   S + ++    + +  D   ++ + L   + ++ ++G V       G+++S+ D
Sbjct: 59  NYILGKYSGKSVVPGNAENK--DNLGEVQAQLQAFIKESNLQGMVSTYRDERGLVVSLQD 116

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +FD  S+   PE   VL KIG++L +    I + G TD  P  N     NW LS+
Sbjct: 117 T---LLFDLGSADVHPEEKEVLIKIGKMLKNLPNYIRVEGFTDDLPIHNQKFDSNWELSV 173

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
            RA +  ++L+   G+   RIS + G+  +R  + +D       NRR+DI++ + +
Sbjct: 174 IRATTVVKILVNEVGIEPQRISAV-GYGEYRPIVPNDSEEHRRLNRRVDIVIMNTE 228



 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +++  +  PN+   W + Y+D +T+L+ FF+VM+ ++  +      +    +
Sbjct: 2  RRLEDESKPNH-ERWLLTYSDMITLLLIFFIVMYTMSTLNAAKFAQLAGSLS 52


>gi|295696765|ref|YP_003590003.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912]
 gi|295412367|gb|ADG06859.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912]
          Length = 266

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 10/191 (5%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           KG         + S          P   +    +  +++L  +  ++ S +       + 
Sbjct: 66  KGLGTTGLIAAQPSAGPPGRVPPAPDFLKTPEQVAEERQLAQIKLQLQSFIQ---KQGVA 122

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V+ E    G+LIS+ D     +FD   +   PE   +L  +   LA     + I GHT
Sbjct: 123 GQVVVEDKPKGLLISLRD---VILFDTGKADLKPEARKLLDGLLPFLAQVGNPLEIEGHT 179

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNS 329
           D  P        NW LS  RA +  + L   G+   R+S  +G+   R   ++D     +
Sbjct: 180 DNRPIHTAQFPSNWELSTARALTVLEYLQAKGIDPKRLSA-TGYGEWRPVASNDNPEGQA 238

Query: 330 ANRRIDILVED 340
            NRR++I +E 
Sbjct: 239 LNRRVNITIER 249



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 8/170 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++   +D   N   W I Y+D +T+LM FF++M+ ++  D      +    +    N 
Sbjct: 1   MRRRRRPEDGKINQERWLITYSDLITLLMIFFVIMYAMSKVDMYKFVNLSASLSQALYNQ 60

Query: 77  MT------ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                    + G+   Q  P      ++  + D   T   V  +      K Q Q     
Sbjct: 61  NQVQLKGLGTTGLIAAQ--PSAGPPGRVPPAPDFLKTPEQVAEERQLAQIKLQLQSFIQK 118

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                     +  K  L    +         DL+    K  +  LP L++
Sbjct: 119 QGVAGQVVVEDKPKGLLISLRDVILFDTGKADLKPEARKLLDGLLPFLAQ 168


>gi|220932514|ref|YP_002509422.1| OmpA/MotB domain protein [Halothermothrix orenii H 168]
 gi|219993824|gb|ACL70427.1| OmpA/MotB domain protein [Halothermothrix orenii H 168]
          Length = 245

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 9/153 (5%)

Query: 193 QDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             + +K+   ++  V  + +   V  E T+ G+++ +       ++D   +   P    +
Sbjct: 87  NQVFEKVMGQINRYVEKEKLSDRVKMELTKRGLVVRLT---GQVLYDIGKAEIKPGGKRL 143

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRI 309
           L +I  ++      I++ GHTD  P  N     NW LS  RA +  +    + G+   R+
Sbjct: 144 LDEIAGIIEKIPNEIAVEGHTDNWPIHNEQFPSNWELSTTRATNVIKYFIERHGIDPSRL 203

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           S  +G++ +R    +D     + NRR++I++ +
Sbjct: 204 SA-AGYSEYRPLYPNDTVEHRAKNRRVEIVILN 235



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           KK   ++  N    W + Y D MT+L+ FF+ ++  +  + +  +            +M 
Sbjct: 5   KKDLEEENKNTSPGWMVTYGDMMTLLLVFFVFLYSFSVMNVEKFEGFISALQA-KLGVMP 63

Query: 79  ASKGIFDEQNPPERSSQNKIDLSID 103
             K I DE+     S  N+ + S  
Sbjct: 64  GGKTIMDEELLSRGSIGNRFNPSNQ 88


>gi|152975140|ref|YP_001374657.1| flagellar motor protein MotS [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023892|gb|ABS21662.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 13/216 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKR 188
           ++  L  +        S     +  K L K +D E+   +     +P +S EK    +  
Sbjct: 18  DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAEVMENTIPDISHEKNSEKVSS 77

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ +L KK+     G V +N ++ V      TG+ I I+D     +FD   +   PE 
Sbjct: 78  KKRMDNLYKKLK----GYVTENGIQEVQVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306
             ++ ++          I + GHTD+ P RN     NW LS  R A   + ++    +  
Sbjct: 131 KEIISRLAGFFQSVPNPIVVEGHTDSRPIRNAKFPSNWELSSARAANMIHHLIEVYEIDP 190

Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
           +R++ + G+A  +    +D P N + NRR+ I V++
Sbjct: 191 NRLAAV-GYADTKPVAPNDSPDNWAKNRRVVIYVKE 225


>gi|23010955|ref|ZP_00051470.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 464

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 106/295 (35%), Gaps = 6/295 (2%)

Query: 47  FFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI 106
           F  + W + A     +       +        A          P R+ +   D S +   
Sbjct: 168 FDPLYWQVAAL-PRQRTDNPGALDTVAAAPSEARLDARARTGAPGRAKEATKDASKESAR 226

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
                 L         +    E      +   +      S     E      K+ D++ +
Sbjct: 227 DVARQSLNDAMRQAGMKLASAEPMPIKEAPPAKQPDSTKSAEAPPEGPVADAKAADIKPA 286

Query: 167 INKEENYFLPPLSK--EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
              E      P +    +         L  L  +I+  +  L        V    T  G+
Sbjct: 287 PKAEAPPSKEPAAAIPAEGAKSAETAALAALKDEIAKAVPSLPMGAPAPRVEVRRTGEGV 346

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN 284
           LISI D+ N  MF   S+ P P+ +  L++I ++L      + +RGHTDA PFR+   DN
Sbjct: 347 LISITDEINFSMFGIGSAEPTPKVVKALERIAKILNTRPGRVVVRGHTDARPFRSETYDN 406

Query: 285 WRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           WRLS   R +        +  S  R S  S     + +IA+DP  + NRRI+IL+
Sbjct: 407 WRLSRPGRRWP--PTCWCAAASTRRGSSASKLCRPQPRIAADPKAAENRRIEILL 459



 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 12/249 (4%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           E+   III K+    +  ++ G+WKI  ADFMT +MA FLVMW+IN+T  + K+ I +YF
Sbjct: 3   EHAHEIIIIKRHGDHEDGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62

Query: 70  NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           NP     +T   KG+ D QN P   + +            +      G+   + +   L 
Sbjct: 63  NPVKLAEVTHDRKGVNDPQNTPNDPAPSGKGKGDGGSAEGSGKADAAGAPGSRARESALF 122

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            + + +     +E         S     L              + F P   +   L  +R
Sbjct: 123 QDPYAVLAKLAAEADAAGPEAASADANPLEVGQPGVAGGETGRDPFDPLYWQVAALPRQR 182

Query: 189 KKRLQDL-----------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
                 L               + T +   A    K    E+ R     S+ D       
Sbjct: 183 TDNPGALDTVAAAPSEARLDARARTGAPGRAKEATKDASKESARDVARQSLNDAMRQAGM 242

Query: 238 DKSSSIPLP 246
             +S+ P+P
Sbjct: 243 KLASAEPMP 251


>gi|218778865|ref|YP_002430183.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760249|gb|ACL02715.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 259

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 111/323 (34%), Gaps = 72/323 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +    +   W + +AD +T+LM FF+++  +++ D    + +   F      L  +
Sbjct: 3   KQPKEIESPDTTMWMVTFADLVTLLMTFFVLLLTMSSMDTKALQTMFTLFAGASGPLDFS 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G                 +  D  +T   +D                           
Sbjct: 63  PYG-------------KVSPMQGDADMTPGPLDGMS------------------------ 85

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                           D          I    +Y   P +  K L ++ +  ++ L ++ 
Sbjct: 86  ---------------PDNVDMLTTLTEILDNSDYIKEPEAILKRLTVRSRDVVKQLTER- 129

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                          +       G++++      T MFD  SS   PE   +L  + +VL
Sbjct: 130 -----------YTDQIYVNEDERGVVLTF---DETVMFDPGSSRIRPEIYPLLDVLAQVL 175

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAH 317
              +  + I GH+D++P  ++    NW LSL RA +       +  +SEDR+  + G  +
Sbjct: 176 KAVSGRVLIIGHSDSTPMHSVQYDSNWDLSLSRALNVLYYFTTEHDLSEDRLG-VGGMGN 234

Query: 318 HRLKIASDPMNSA--NRRIDILV 338
            +   ++        NRR++I++
Sbjct: 235 TKPIASNKTQAGRDKNRRVEIVI 257


>gi|153956379|ref|YP_001397144.1| hypothetical protein CKL_3788 [Clostridium kluyveri DSM 555]
 gi|219856692|ref|YP_002473814.1| hypothetical protein CKR_3349 [Clostridium kluyveri NBRC 12016]
 gi|146349237|gb|EDK35773.1| MotB [Clostridium kluyveri DSM 555]
 gi|219570416|dbj|BAH08400.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 254

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 16/206 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           +    SL      GK +  S D            + P   ++     ++K+L +L  ++ 
Sbjct: 45  KQVAESLKMSMGGGKSVIGSDDTSSIKET-----VDPEETQQTDTDDQEKKLSELKSEVD 99

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L       +   V       G+++S+ D     +FD   +   PE    L +IG++L 
Sbjct: 100 KYLQN---SEMSGSVSTSINERGLIVSMNDS---LLFDTGKADIKPEFQQKLVEIGKILN 153

Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318
                + I GHTD  P  N     NW+LS DRA +  + L+K +G+  +++S I G+  +
Sbjct: 154 QLGNYMRIEGHTDNIPISNNQYSSNWKLSCDRASNVTEFLIKSAGIEPEKLSAI-GYGEY 212

Query: 319 RLK--IASDPMNSANRRIDILVEDRQ 342
           R     ++D   + NRR+DI++ + +
Sbjct: 213 RPVGDNSTDEGKAKNRRVDIVILNSK 238



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 14/132 (10%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K        N   W + Y+D +T+LM FF+VM+ ++       K + +         M  
Sbjct: 2   KKKKKHAEENTERWLLTYSDLITLLMIFFVVMYSMSNISASKYKQVAESLK----MSMGG 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            K +    +            SI E +             +KK  +       YL NS+ 
Sbjct: 58  GKSVIGSDDT----------SSIKETVDPEETQQTDTDDQEKKLSELKSEVDKYLQNSEM 107

Query: 140 SEHCKNSLTRDS 151
           S     S+    
Sbjct: 108 SGSVSTSINERG 119


>gi|226310457|ref|YP_002770351.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599]
 gi|226093405|dbj|BAH41847.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599]
          Length = 269

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 115/327 (35%), Gaps = 77/327 (23%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           + K       +   SW I YAD +T+L+A F+V++  +  D      + + F       +
Sbjct: 4   RPKRHAHHEEHMDESWLIPYADLLTLLLALFIVLFASSEMDAKKFDQMVRSF----SVAI 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ +  +P                                         +      
Sbjct: 60  NGGTGVMNYPSP-----------------------------------------VPLDPQL 78

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           QQ    K +   + +K ++  +  +  +                     K  + L+ L  
Sbjct: 79  QQQTLHKGAQEAEKQKTEEEKRLEEAVR---------------------KETEDLKKLQT 117

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+   +     + +   +  + T  G+LI+I+D     +FD   +   PE   +  ++  
Sbjct: 118 KLDGYIQQ---NKLQDKLQTKLTDEGLLITILDN---ALFDSGKADLKPEARKLASEMAG 171

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +L    + +++ GHTD  P R      NW LS  R+ +  +VL+++  +   + S  +G 
Sbjct: 172 MLVPHPKKVTVTGHTDNVPIRRAEFPSNWDLSAKRSVNFLKVLLENKNLDPTKFSA-TGL 230

Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340
             +     +  D   + NRR+++ +  
Sbjct: 231 GEYHPVAPNTTDEGRAKNRRVEVAILR 257


>gi|260775707|ref|ZP_05884603.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608123|gb|EEX34292.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 294

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 108/326 (33%), Gaps = 61/326 (18%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81
            +   P     W   +AD M++LM FF+++   +  D    K I                
Sbjct: 7   KVTCPPPGAPKWLSTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------------ 54

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
                          +    +   I    +         + +  R E           SE
Sbjct: 55  ---------------EYAFGVQHQIKVVDIPKGTSVIATEFRPGRPEPTPLNFIMQHTSE 99

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
             K  L        DL    + +      E               +  +  + LA  I +
Sbjct: 100 LTKPHL--------DLQPGEERQGGGKGHEEA-------------ESNEANKALAAIIQA 138

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
                V + +V     E     ++I I   R   MF + S+   P    +++++ +++  
Sbjct: 139 AFKREVDEGMVD---VEDLGQELVIRI---REKGMFPQGSAFLQPAFRPLIRQLADLIKD 192

Query: 262 STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR 319
               I I GHT +  F   + R +W LS  RA S    + K  G    R+  I G++ H+
Sbjct: 193 VPGQIRIAGHTSSMTFDSELYRSSWDLSALRAASVVLEMEKVPGFDSHRV-AIQGWSEHK 251

Query: 320 LKIASD-PMNSA-NRRIDILVEDRQG 343
              +   P +   +RR++I +  RQG
Sbjct: 252 PLSSEQYPNSVGSSRRVEISL--RQG 275


>gi|296188354|ref|ZP_06856746.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7]
 gi|296047480|gb|EFG86922.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7]
          Length = 277

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 10/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S   K   ++ S+          + +      N      S         + +++DL K
Sbjct: 35  AMSNVDKAKFSQLSQSMSIAMGGGKIMQGNENSPNISNSSPSGNSSDGKTEESKMEDLKK 94

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+ S L     + +   V  E    G+++S+ D      F+   +  +  +   L +IG+
Sbjct: 95  KVDSYLQ---KNGMQNSVTTEVDERGLVVSLRDT---LFFETGKAEVIAASQGKLVEIGK 148

Query: 258 VLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L      + I GHTD  P  N     NW+LS  RA +  ++L+ +GV   ++S ++ + 
Sbjct: 149 ILNQLDNTMRIEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YG 207

Query: 317 HHRLK--IASDPMNSANRRIDILVEDRQ 342
            +R     +++   + NRR+DI+V   +
Sbjct: 208 EYRPVLDNSTEDGRARNRRVDIIVVSNK 235



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N   W + Y+DFMT+LM  F+V++ ++  D      + Q         M  
Sbjct: 2   KKKKQEEHENSERWLLSYSDFMTLLMILFVVLYAMSNVDKAKFSQLSQSM----SIAMGG 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            K +   +N P  S+ +    S D    ++ ++      +   Q   ++N++    + +
Sbjct: 58  GKIMQGNENSPNISNSSPSGNSSDGKTEESKMEDLKKKVDSYLQKNGMQNSVTTEVDER 116


>gi|87120689|ref|ZP_01076582.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86163917|gb|EAQ65189.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 292

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 13/252 (5%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           + +   +    + + I   S+        Q+    + E         +  E  +N+L   
Sbjct: 8   QLAGSMREAFGVQKQIEAKSIPTGTSIIAQEFSPGKPEPTPINEVRQKVDERPENTLEVL 67

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
            + G+D     +   +  +         S   +   K+ K+ ++ AK+ISS L   ++  
Sbjct: 68  CKPGEDDLNEKEGVGAQGE----AYVDKSTADLEREKQVKQTEEDAKQISSVLREEISKG 123

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
               V  ET    I I +   +    F+  S+    + I ++  I +VL      I++ G
Sbjct: 124 ---TVEVETQERTITIRL---KEKGSFESGSAELNFDFIPIIDMIRDVLIGIQGTIAVEG 177

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           HTD  P  +     NW+LS  RA S  + L  +G  E +   ++G+A  R    +D    
Sbjct: 178 HTDNIPVNSGRFGSNWQLSSARAISVAEELFATGQLEQKRFSVTGYADTRPLAPNDTFFN 237

Query: 328 NSANRRIDILVE 339
            ++NRR++++++
Sbjct: 238 RASNRRVELIIK 249


>gi|329895993|ref|ZP_08271251.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
 gi|328922074|gb|EGG29437.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
          Length = 354

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 57/359 (15%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASKGIFDE 86
              +AD  T+LMAFF+++      +    K +    N                S  +  +
Sbjct: 1   MATFADMATLLMAFFVLILSFAEMNVPKFKDVSGSMNDSFGVQRKVPVVEPPLSDSVIAK 60

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           Q    +     + +  ++   +   +     T  K     L ++I  +  +   E  +  
Sbjct: 61  QFSQAKVDTTALSVIQEQTTDELQPEDAELRTTTKPSDATLGSDIEKVRAALSEEIARGL 120

Query: 147 LTRDSE--------KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA-- 196
           +    E        K          E+S  +        +S    +A  + + + ++   
Sbjct: 121 VEVVQENEKISVITKAASNEGLESGEESTQRGRQLDQDTISLFAKVADAQTQVVSEIEIR 180

Query: 197 ------------------------------KKISSTLSGLVADNIVKGVLFETTRTGILI 226
                                         ++I   L+  ++ ++   V  E  +  I I
Sbjct: 181 DSSPSDSAESAQSQANAPAPPEDDIGDSDLEQIRQNLAPEISRSL---VNVEMDQDQIKI 237

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDN 284
           ++ DQ     F   S+   PE + +L ++G+ ++ +  V+++ GHTD+ P  F    + N
Sbjct: 238 TLADQ---GAFVSGSADLRPEFLQLLNRVGDSISDTDGVVTVSGHTDSIPMAFSMRFKSN 294

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           W LS  R+ S    L+  G   D    + G+A       +D     + NRRI+I+++ +
Sbjct: 295 WDLSAARSASVADYLITQGYLGDIEVSVQGYADTVPIATNDTAEGRAKNRRIEIMIDKK 353


>gi|312134920|ref|YP_004002258.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774971|gb|ADQ04458.1| OmpA/MotB domain protein [Caldicellulosiruptor owensensis OL]
          Length = 257

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            R+   ++L   I   + GL+ ++ ++G  L      G+ I + D     +F+  S+   
Sbjct: 93  NRQMTEEELINDIQKQVLGLIKEHGIEGKALVIQEERGLSILLKD----VLFNTGSAKLT 148

Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302
           P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA S  Q +L  S
Sbjct: 149 PQAKEVVHEIAKILEKVPDNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEILRVS 208

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 209 KVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247


>gi|261409603|ref|YP_003245844.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261286066|gb|ACX68037.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10]
          Length = 271

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 101/320 (31%), Gaps = 70/320 (21%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
                  W I YAD +T+L+ FF+VM+ ++  D +  K + Q                  
Sbjct: 15  EGEQRDRWMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQAT------------- 61

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
                                       + G +  +               +   +   +
Sbjct: 62  ---------------------------FQSGDSILEMGSGITGTADTENHKNPPPKPAAD 94

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
               D + G++     +L     +EE                       LA  +      
Sbjct: 95  EEGEDKDNGQEPLTERELAFRAQEEE-----------------------LANFMGLIQQY 131

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +  + + + +       GI I++ D     +FD   +   P    VL K+  +       
Sbjct: 132 VKDNQLEEDIFISDEPQGIAITLSD---RFLFDVGKAELKPGAAPVLGKLASLFGDLNTT 188

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +SI GHTD  P    +  +DNW LS  RA S  +  ++    +    + +G+A  R    
Sbjct: 189 VSIEGHTDNVPIGRYSSYKDNWELSGARAMSVLRFFLEHSKLDPAGFQYAGYADTRPAAD 248

Query: 324 SDPMN--SANRRIDILVEDR 341
           +        NRR++I V  +
Sbjct: 249 NATAEGKQKNRRVEITVLRQ 268


>gi|68164502|gb|AAY87231.1| predicted flagellar motor protein [uncultured bacterium BAC17H8]
          Length = 385

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 118/367 (32%), Gaps = 52/367 (14%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LM 77
               P    +W   +AD  T+LMAFF+++      +    K I     N FG      ++
Sbjct: 18  PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLKNAFGVQKIVPIV 77

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              KG          S    +   + +  T  +          K Q     +    +  +
Sbjct: 78  EQPKGTTVLSLNFSPSPSPSVTQDMTQQTTDVTKPDLEVKQRDKDQDGGESDGAEEIVKA 137

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-- 195
            +    +  +  +      +   T  E    +  N     L           K  Q++  
Sbjct: 138 LEDAIARGDIEVEVLGENVVVNFTPTEAKDEELPNLLQETLEAIDKAKKAAGKAEQEVLF 197

Query: 196 --------------------------------AKKISSTLSGLVADNIVKGVLFETTRTG 223
                                            ++ +S     +A++ +K  L +    G
Sbjct: 198 GGLEQKLAQLAAAADAAIQSGKAASAEAKAEAEQQKASNEKAEIAEDDLKVALRQEIGQG 257

Query: 224 ILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
           ++         II       F   S+        ++++I  V    +  I++ GHTD  P
Sbjct: 258 LVAVDRQEDKVIITVGAGGAFPSGSAELTEAARKIMEEIAGVNEAGSGEITVSGHTDDVP 317

Query: 277 --FRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA--N 331
             F +  RDNW L+  RA S  Q L  +G V   R+  +S F   +   ++D       N
Sbjct: 318 LIFGSQFRDNWDLAAARAASVVQALEDTGKVPAGRMQAVS-FGESQPVESNDTARGRATN 376

Query: 332 RRIDILV 338
           RRI+I +
Sbjct: 377 RRIEIEI 383


>gi|325525470|gb|EGD03283.1| flagellar motor protein MotB [Burkholderia sp. TJI49]
          Length = 201

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 49/249 (19%)

Query: 8   NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
           ++  D+ I++K+ VA     ++ G+WK+ YADFMT +MAFFL+MW+++A      K I +
Sbjct: 2   SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           YFN   K  +  S              ++  D SI     ++   +  G+  +      L
Sbjct: 61  YFNTPLKAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTPL 108

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
              +                     K  D      L+ ++ + E   L  L  + + A++
Sbjct: 109 AERV--------------------AKPVDEAAQAQLQGALERREQARLHDLQIKLMAAIE 148

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L+   ++I                  ++T  G+ I I+D +  PMF  SS    P 
Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLLGLRIEIVDTQKRPMFAMSSDRVEPY 192

Query: 248 TIVVLQKIG 256
              +L++IG
Sbjct: 193 MRDILREIG 201


>gi|146296538|ref|YP_001180309.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410114|gb|ABP67118.1| OmpA/MotB domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 257

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            R+   +++   I   +  L+ ++ ++G VL      G+ I + D     +F+  S+   
Sbjct: 93  NRQMTEEEIINDIQKQVLSLIKEHGIEGKVLVIQEERGLSILLKD----VLFNSGSAQLT 148

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302
           P+   V+ +I ++L       I I GHTD  P  N     NW LS  RA +  Q +L  S
Sbjct: 149 PQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATTVLQEILRVS 208

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            V  +R   + G+  +R   ++      + NRR+ I++  
Sbjct: 209 KVKPERF-SVVGYGEYRPIASNKTPQGRALNRRVTIVILR 247


>gi|115526365|ref|YP_783276.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520312|gb|ABJ08296.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 270

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFET 219
             L+++I+          +      MK ++     +  +   L  +     + K ++F+ 
Sbjct: 79  QPLDRTIDDSAAIEHGQDAAIATKQMKAEREFATASASLRRALQDIPELTEVTKNIIFQE 138

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T   + + I+D  + PMF + S++P   T V+++K+   L  +   ISI GHT ++    
Sbjct: 139 TSQSLALEIVDHFSRPMFRQGSAVPYDWTRVLIEKLAVPLKATALRISIVGHTSSTETAR 198

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             RD + LS+ RA +  ++L + G+   ++  ++G        + DP  +ANRR+ I + 
Sbjct: 199 GDRDVFELSVLRADAVRRILKQQGLPTSQLFVVAGKGDREPLFSDDPTMAANRRVTIALM 258


>gi|257095366|ref|YP_003169007.1| flagellar motor protein MotD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047890|gb|ACV37078.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 276

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            ++ +  K++++++++AK+I   ++ L+    V+ +    T  G+ I I D     +F  
Sbjct: 86  AQEAVKQKQREKMRNVAKEILEVMAPLIEQGKVRVL---ETSRGVTIEINDS---ILFSP 139

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298
             ++  P+ I  +Q + EVL  +   I+I GHTD  P +N     NW LS  RA +  ++
Sbjct: 140 GQAVLQPQLIKAMQSVAEVLVAADFPITIEGHTDNVPIKNTQFPSNWELSAVRATTVLRL 199

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              +G++  R++ I G+A  R    +      + NRR+ IL++ 
Sbjct: 200 FADAGIAAGRLTAI-GYADTRPVEPNLLADGRARNRRVSILIDS 242


>gi|262172094|ref|ZP_06039772.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
 gi|261893170|gb|EEY39156.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451]
          Length = 279

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 47/295 (15%)

Query: 57  TDDDTKKAIEQYF-------NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HIT 107
            D    K I           N      +     I  ++  P R     ID+ + +   IT
Sbjct: 1   MDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDIT 60

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           + ++D + G +++    QR    +    +++ S     +   + ++ +            
Sbjct: 61  QQTLDFQEGDSDRAGGNQRDSGKLTGGQSAESSTQDNQNTQSEMQQQQ------------ 108

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
                            A    ++++ +A+ I   LS  +    ++    E     I I 
Sbjct: 109 -----------------AKAMSEQMETVAESIKKALSREIEQGAIE---VENLGQQIDIR 148

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286
           I   R    F + S+   P+   ++++I +++      + + GHTD       + R NW 
Sbjct: 149 I---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWD 205

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           LS  RA S  Q + K    + +  ++ G A  +    +D       NRR++I + 
Sbjct: 206 LSAQRAVSVAQEMEKVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISIL 260


>gi|323706054|ref|ZP_08117624.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534668|gb|EGB24449.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 241

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 199 ISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I+S L  L+   N+   V ++    G +IS+ D     +FD  S+   P+    L KIG 
Sbjct: 89  IASQLDKLIKQYNLQNMVTYKVDERGFVISLNDT---LLFDTGSADVKPDQKETLIKIGN 145

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +L      I + G+TD  P  N     NW LS+ RA +  ++L+    +   +IS + G+
Sbjct: 146 ILKSMPNYIRVEGYTDNVPINNNQFHSNWELSVIRATNVVEILVNDVKMDPAKISAV-GY 204

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
             +R  + +D       NRR+DI++ +
Sbjct: 205 GEYRPIVPNDSDKNRQLNRRVDIVIMN 231



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +    +    N   W + Y+D +T+LM FF+V++ I+  +    + I           
Sbjct: 1   MIRHEEDEGKKENSERWLLTYSDMITLLMIFFIVLYTISTVNSQKFQQIAASL----GKT 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
              +  +  +Q+    S  + I  +       NS+  ++    ++   Q +
Sbjct: 57  FDGTNYVIGQQS--GNSILDSIKTTGTNGTNDNSIASQLDKLIKQYNLQNM 105


>gi|225181601|ref|ZP_03735042.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167709|gb|EEG76519.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 227

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
             S+ +++ +    + +D+        S L  + +   +       G+++ I D     +
Sbjct: 52  DPSRGEMIELAVDHKFEDVLMTYLEVKSHLQEEGLANIIDVRIEDRGVVLEIQD---RLL 108

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295
           FD   +   PE   +L K+  +LA+    I + GHTD  P +      NW LS+DRA   
Sbjct: 109 FDTGRAEIRPEARELLVKVAGILANVPNQIIVEGHTDNVPIQTAQYPSNWELSVDRAVRV 168

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            + L  +  +  +R    +G+   +   +++     + NRR++I++
Sbjct: 169 VRYLSERQDIDPERFLA-TGYGEFQPVASNETVQGRAKNRRVNIVI 213


>gi|77463800|ref|YP_353304.1| flagellar MotB protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388218|gb|ABA79403.1| flagellar MotB protein [Rhodobacter sphaeroides 2.4.1]
          Length = 366

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 24  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130
           +   + D   P       + D   D   +++  D              + K Q +  E  
Sbjct: 84  SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178
           +    + +       SL R   +   L    + + +          P             
Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTAQPRPEPKAGPAGPGEGTGAPPGP 203

Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
               +   A+++  R +  A ++ + L   VA+ +VK    E T   + +S+        
Sbjct: 204 PAGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S    P+   V+ +I E   +    I++ GHTD  P    A RDN  L+  RA S 
Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317

Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+ SG V   RI+ +S G        A++   + NRRI+I +
Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362


>gi|126462636|ref|YP_001043750.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104300|gb|ABN76978.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 366

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 24  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130
           +   + D   P       + D   D   +++  D              + K Q +  E  
Sbjct: 84  SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178
           +    + +       SL R   +   L    + + +          P             
Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTAQPRPEPKAGPAGPGEGTGAPPGP 203

Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
               +   A+++  R +  A ++ + L   VA+ +VK    E T   + +S+        
Sbjct: 204 PVGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S    P+   V+ +I E   +    I++ GHTD  P    A RDN  L+  RA S 
Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317

Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+ SG V   RI+ +S G        A++   + NRRI+I +
Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362


>gi|120553254|ref|YP_957605.1| flagellar motor protein MotB [Marinobacter aquaeolei VT8]
 gi|120323103|gb|ABM17418.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 305

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 65/321 (20%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
            ++    + +W + +AD M++LM FF+++   +  D    K I    +            
Sbjct: 5   PEEEKPGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGELS------------ 52

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                                            G   +    +  +           +  
Sbjct: 53  ------------------------------KAFGVQREVPALEIPQGTSPIFDKFSPAPP 82

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
               +    +   D+       KS              EK +    ++++     +I   
Sbjct: 83  EPTVVNEVKQTTTDVQPEIQTLKSPE------------EKAIEETIQEQMDANMARILEV 130

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   + D          +     I II       F   S+    E   +L  + EVLA  
Sbjct: 131 LEPAILDG-----RINVSEDQRRI-IIRIEEKGSFASGSAQLTWEFEGLLMDMAEVLADM 184

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              ++I GHTD  P R      NW LS    A  A  +L +  V+ DRI +++G A    
Sbjct: 185 PGDLAIEGHTDNVPIRTERFYSNWDLSAARAAAVANVLLAREQVTPDRI-RVTGLADTEP 243

Query: 321 KIASD--PMNSANRRIDILVE 339
           ++ +      + NRR++I+++
Sbjct: 244 RVPNTSPENRAKNRRVEIVID 264


>gi|221639652|ref|YP_002525914.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221160433|gb|ACM01413.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131]
          Length = 366

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 24  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130
           +   + D   P       + D   D   +++  D              + K Q +  E  
Sbjct: 84  SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178
           +    + +       SL R   +   L    + + +          P             
Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSQPRPEPKAGPAGPGEGTGAPPGP 203

Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
               +   A+++  R +  A ++ + L   VA+ +VK    E T   + +S+        
Sbjct: 204 PVGGDTGAALRQSVRAELDAIRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S    P+   V+ +I E   +    I++ GHTD  P    A RDN  L+  RA S 
Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317

Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+ SG V   RI+ +S G        A++   + NRRI+I +
Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362


>gi|332558675|ref|ZP_08412997.1| MotB [Rhodobacter sphaeroides WS8N]
 gi|332276387|gb|EGJ21702.1| MotB [Rhodobacter sphaeroides WS8N]
          Length = 366

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 24  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130
           +   + D   P       + D   D   +++  D              + K Q +  E  
Sbjct: 84  SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178
           +    + +       SL R   +   L    + + +          P             
Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSQPRPEPKAGPAGPGEGTGAPPGP 203

Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
               +   A+++  R +  A ++ + L   VA+ +VK    E T   + +S+        
Sbjct: 204 PVGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S    P+   V+ +I E   +    I++ GHTD  P    A RDN  L+  RA S 
Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317

Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+ SG V   RI+ +S G        A++   + NRRI+I +
Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362


>gi|320106352|ref|YP_004181942.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319924873|gb|ADV81948.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4]
          Length = 284

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 106/325 (32%), Gaps = 65/325 (20%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +      P+    W + YADF+T+L AFF+V++                           
Sbjct: 2   RGKKKHAPHGHERWLVSYADFITLLFAFFVVLFA-------------------------- 35

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                   +  +   Q  + ++I     + + D      ++          +   +    
Sbjct: 36  -------GSRGDAKKQQLLAVAIQTAFAQGAFDAH----SKTPALAPSAGAMGKPTPIAM 84

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                       E          L +    ++N  LPPL  +     KR           
Sbjct: 85  PTPMTPEAAARKEAADKKRIYDALAQMAVPQKNQNLPPLGAKPPSPEKRGTA-------- 136

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                       +  V F +   G+++S+ D      F+  S+    + I VL++I   L
Sbjct: 137 ------------ISAVSFRSEPEGLVLSLQD---AGFFNSGSAALRADAIPVLERIAASL 181

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + + GHTD           NW LS  RA +  +VL+   +       ++G+A  
Sbjct: 182 PMGP--LRVEGHTDNVAIHTALYASNWELSTARANAIARVLLARSLVNPASLAVAGYAEF 239

Query: 319 RLK--IASDPMNSANRRIDILVEDR 341
                 +++   + NRR+DI++  +
Sbjct: 240 HPISSNSTEEGRAKNRRVDIVLLKQ 264


>gi|152976910|ref|YP_001376427.1| flagellar motor protein MotB [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025662|gb|ABS23432.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 265

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D       E S +  E   +   + EK  A  +++ + +L     S    + 
Sbjct: 66  TGNKEFLSDQKPKKKEELSTDSLEAENIKKQATEKAEAEVKQREMNELKAVQKSIDQYIE 125

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++I+I++     +FD   +   PE++ +  ++  +L + +   I
Sbjct: 126 ERQLSSSFKTKLTEQGLMITILEN---VLFDSGKADVKPESLNIANEMSHLLLSAAPREI 182

Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S  +G+  +R   ++
Sbjct: 183 TVSGHTDNVPITNSQFSSNWELSTQRAVNFMQVLLQNKQLDPAKFSA-TGYGEYRPATSN 241

Query: 325 DPMN--SANRRIDILVEDRQG 343
           D     + NRR+++ +   QG
Sbjct: 242 DTSEGKAKNRRVEVFILPLQG 262



 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMALSFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++  P++  +   D    E+I K + +       Q++  +            ++ +   
Sbjct: 74  DQK--PKKKEELSTDSLEAENIKKQATEKAEAEVKQREMNELKAVQKSIDQYIEERQLSS 131

Query: 145 NSLTRDSEKG 154
           +  T+ +E+G
Sbjct: 132 SFKTKLTEQG 141


>gi|291280094|ref|YP_003496929.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1]
 gi|290754796|dbj|BAI81173.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1]
          Length = 249

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 10/173 (5%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
             ++       +  +     K KK  + +   + + +      N+   +    T  GI +
Sbjct: 61  AGRKSEMGKEEILSKMDFVDKVKKSQEQMLSGLKNYIEQA---NLSSQISVVKTDKGISV 117

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
            I+D     +F   S+  LP  I +L+K+  V+  +   I + GHTD  P        NW
Sbjct: 118 RIMDS---VLFAPGSAEILPSAIPILEKLAAVMRDTPYNILVEGHTDDIPISTPKYPSNW 174

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            LS  RA +  + L+  GV  +++S  +G+A +   + +      + NRR++I
Sbjct: 175 ELSTARAVAVVKFLISRGVKPEKLSA-AGYAQYHPLVPNITPENRAKNRRVEI 226


>gi|89100104|ref|ZP_01172973.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
 gi|89085194|gb|EAR64326.1| flagellar motor protein [Bacillus sp. NRRL B-14911]
          Length = 229

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + ++RL++L +++   L     + +   ++   T  G+++ + +Q    +F+   +  + 
Sbjct: 71  QEEERLENLLQEVEGYLE---KNGLEDVIVANRTERGVVLVLQEQ---VLFESGEAEIID 124

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305
                L K+G +L     ++ + GHTD  P        NW LS  RA S  + L  +GV 
Sbjct: 125 RNSGFLDKVGSLLVGMPNLVKVEGHTDNRPIATYRYPSNWELSAARASSVIRYLAGTGVD 184

Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
             R   + G+   R  + +D       NRR+++++ D +
Sbjct: 185 SKRFIAV-GYGDTRPLVPNDSAENLEKNRRVEVIISDPR 222



 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            + ++D +T+++ FF++++ ++  D    KA+ + F    K  M     I   +NP E  
Sbjct: 1   MVTFSDLVTLILVFFILLFSMSQIDIVKFKAVSESFQ--DKQFMDFYPSIIPFENPSEND 58

Query: 94  S----QNKIDLSIDEHITKNSVDLKIGSTNQKK 122
                Q       +E   +N +    G   +  
Sbjct: 59  KNVVNQGPDSDRQEEERLENLLQEVEGYLEKNG 91


>gi|229138428|ref|ZP_04267017.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
 gi|228644965|gb|EEL01208.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
          Length = 213

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK       KKR+ DL KK+ + 
Sbjct: 20  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA- 78

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ K+       
Sbjct: 79  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 132

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 133 PNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 191

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 192 VVPNDSPQNWEKNRRVVIYIKE 213


>gi|256833230|ref|YP_003161957.1| OmpA/MotB domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686761|gb|ACV09654.1| OmpA/MotB domain protein [Jonesia denitrificans DSM 20603]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 112/327 (34%), Gaps = 55/327 (16%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +K   ++   N   W + YAD +TVL+  F+V++ ++  D    + +             
Sbjct: 8   RKKGHEEEHANHERWLVSYADMLTVLVGLFIVLYAMSQVDQAKFEQLAA----------- 56

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
                                          S+ +  G +                + + 
Sbjct: 57  -------------------------------SLSVSFGGSGSSILSDGSSIIDANTAITP 85

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            S    +     + +  +     D  ++ + EE    P   K+   A    + LQ LA +
Sbjct: 86  TSVEPPDEFLAAALRNDNSGSDEDSGQAGDAEEEAIDP---KDMAAAQAEYENLQSLADR 142

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + L       +   V +     G+++ ++       F   ++     T  V+     +
Sbjct: 143 IDAALR---KRGLEGSVEYRINERGLIVGLVSDE--LFFQADTARLTKTTERVVDTTARI 197

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAH 317
           L      +SI GH ++    N  + NW LS DRA     + + K  +S  RI+ + GF  
Sbjct: 198 LRELDNELSIEGHANSLQSVN-YKSNWELSSDRATQVLRRYVEKGKISGTRIAAV-GFGD 255

Query: 318 HRLKIASDPMNS--ANRRIDILVEDRQ 342
            R    +D       NRR+DI++   Q
Sbjct: 256 TRPLADNDTKRGLKINRRVDIVILSSQ 282


>gi|300853354|ref|YP_003778338.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
 gi|300433469|gb|ADK13236.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
          Length = 283

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 12/207 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKI 199
                SL+     GK +  + +     +  +    P  S +    +K +  +L+ L K++
Sbjct: 47  NKLSQSLSIAMGGGKTIIGADNTSSVKDSVKTVDKPTESDQSEEQVKMEANKLKQLKKQV 106

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S L+   A+ + + V  +    G+++S+    NT  FD   +   PE    L  IG+++
Sbjct: 107 DSYLA---ANGLSQSVSSQIDERGLVVSLS---NTLFFDTGKAEIKPEIQNTLMGIGKMI 160

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
                 I + GHTD  P  N     NW+LS  RA +  Q L    G+  ++++ + G+  
Sbjct: 161 NQMGNSIRVEGHTDNVPISNNEYASNWQLSCARAANVTQFLQNKVGIKPEKLTSV-GYGE 219

Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342
           +R     ++D   + NRR+DI++E  +
Sbjct: 220 YRSVTDNSTDANRAKNRRVDIIIESNK 246



 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KKK    D   +   W + YADFMT+LM FF+VM+ ++  D      + Q         
Sbjct: 1   MKKKNKKPDEGPSAERWMLSYADFMTLLMIFFVVMYAMSQVDQTKYNKLSQSL----SIA 56

Query: 77  MTASKGIFDEQNPPE-RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           M   K I    N    + S   +D   +   ++  V ++     Q K+ 
Sbjct: 57  MGGGKTIIGADNTSSVKDSVKTVDKPTESDQSEEQVKMEANKLKQLKKQ 105


>gi|229160692|ref|ZP_04288684.1| OmpA/MotB domain protein [Bacillus cereus R309803]
 gi|228622707|gb|EEK79541.1| OmpA/MotB domain protein [Bacillus cereus R309803]
          Length = 226

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ DL KK+ + 
Sbjct: 33  ATSKQDTVKLSKMLEKFSDAEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA- 91

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ I I+D     +FD   +   PE   ++ ++       
Sbjct: 92  ---YVDNNGISQVNVYREDTGVSIVIVDN---LIFDTGDASVKPEAKEIISQLVGFFQSV 145

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 146 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYHVDDKRLAAV-GYADTKP 204

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 205 VVPNDSPQNWEKNRRVVIYIKE 226


>gi|47566111|ref|ZP_00237149.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus G9241]
 gi|47557028|gb|EAL15358.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus G9241]
          Length = 225

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ DL KK+ + 
Sbjct: 32  ATSKQDTVKLSKMLEKFSDAEQVDAKVMGNTIPDISHEKNDEKMASKKRMDDLYKKLKA- 90

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ K+       
Sbjct: 91  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 144

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD+ P  N     NW LS  RA +    L++    ED+     G+A  +  
Sbjct: 145 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 204

Query: 322 IASD-PMN-SANRRIDILVED 340
           + +D P N   NRR+ I +++
Sbjct: 205 VPNDSPQNWEKNRRVVIYIKE 225


>gi|195953009|ref|YP_002121299.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932621|gb|ACG57321.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 271

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           +  LP  +  KI   ++ + +    K+I   L       +      +    GI + + D 
Sbjct: 67  SQILPQPALPKIQLTQKGQYINMQLKRIEQMLK---KQGLEGKFKVKLVPQGIKLILQDT 123

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
               +F   S+   P+   +L  I ++++     I I G TD +P   +    NW LS D
Sbjct: 124 ---VLFKSGSADIDPKYYSLLDSIYKIISSLPNPIEIDGFTDNTPIHTLTFPSNWELSTD 180

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           RA S  +  +  G    +I KI+G+  +   + +      + NRR++I + + +G
Sbjct: 181 RAASVAKYFIFKGFDPSKI-KIAGYGKYHPLVPNTTPQNKAMNRRVEITILNIKG 234



 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                       W I YADF+T+L+A F+ ++ I        KAI  Y   F K +    
Sbjct: 3   KKHKCPEEASERWAIPYADFLTLLLALFISLYAIMRGS----KAIPIYAEAFAKAM--GM 56

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           + +  EQ  P +         I        +++++    Q  + Q LE  
Sbjct: 57  RILPFEQTLPSQILPQPALPKIQLTQKGQYINMQLKRIEQMLKKQGLEGK 106


>gi|313200583|ref|YP_004039241.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312439899|gb|ADQ84005.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 313

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +     L++S  +     +  + +       +  +++    +        L++      +
Sbjct: 42  QGKYEQLTSSLGTAFTGENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRR 101

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            ++ +  +A  +++ L+ +V +  +K         G+ + I D     +F   +S   P 
Sbjct: 102 EREAMTAMANNLANHLAPMVLEGKIK---VMQNNRGVRVDIHDS---LLFAPGASELQPI 155

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L +I + L  +   I + GHTD  P  N     NW LS  RA S  ++L  SG+ E
Sbjct: 156 ASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAMRASSVVRMLQDSGLDE 215

Query: 307 DRISKISGFAHHRLKIASDP-MNSANRRIDILVE 339
            R+S +   A   L+  S P   + NRR+ I++ 
Sbjct: 216 KRLSAVGFGASQPLEDNSTPLGRARNRRVSIMIL 249



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++  +++  +N   W + YADF+T+L AFF+VM+ I++ +    + +            T
Sbjct: 2   RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVNQGKYEQLTSSL----GTAFT 57

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                     P   +    I     +      ++L   +  Q+++ + +      L+N
Sbjct: 58  GENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRREREAMTAMANNLAN 115


>gi|253998497|ref|YP_003050560.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985176|gb|ACT50033.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 313

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +     L++S  +     +  + +       +  +++    +        L++      +
Sbjct: 42  QGKYEQLTSSLGTAFTGENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRR 101

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            ++ +  +A  +++ L+ +V +  +K         G+ + I D     +F   +S   P 
Sbjct: 102 EREAMTAMANNLANHLAPMVLEGKIK---VMQNNRGVRVDIHDS---LLFAPGASELQPI 155

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L +I + L  +   I + GHTD  P  N     NW LS  RA S  ++L  SG+ E
Sbjct: 156 ASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAMRASSVVRMLQDSGLDE 215

Query: 307 DRISKISGFAHHRLKIASDP-MNSANRRIDILVE 339
            R+S +   A   L+  S P   + NRR+ I++ 
Sbjct: 216 KRLSAVGFGASQPLEDNSTPLGRARNRRVSIMIL 249



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++  +++  +N   W + YADF+T+L AFF+VM+ I++ +    + +            T
Sbjct: 2   RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVNQGKYEQLTSSL----GTAFT 57

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                     P   +    I     +      ++L   +  Q+++ + +      L+N
Sbjct: 58  GENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRREREAMTAMANNLAN 115


>gi|83642951|ref|YP_431386.1| flagellar motor protein [Hahella chejuensis KCTC 2396]
 gi|83630994|gb|ABC26961.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 275

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 120/330 (36%), Gaps = 67/330 (20%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74
           I  +K +    P    +W + +AD MT+L+ FF+++   ++ D +  ++I       FG 
Sbjct: 2   IKPRKQSGGLLPVGAPAWIVTFADLMTLLLTFFILLLSFSSLDAEKYRSIAYSMSKAFGV 61

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             + +S+G  D                                             ++ L
Sbjct: 62  AWVPSSQGAPD---------------------------------------------MYPL 76

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
                       + RD    +     +++E S++  +         E             
Sbjct: 77  GGDITPTVPMEPVIRDKGDAEQPAPQSNVEPSLDLSQEVVSEAAYMEN----------DR 126

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA ++ S L   + D  V     +    G+++S  +      F   S       + VL K
Sbjct: 127 LASRMISLLENEIEDQAVD---IKFDDKGVVLSFTE---RATFASGSEELKLYMLPVLMK 180

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKI 312
           + +VLA     I + GHTD  P  ++  R NW LS  RA S    L+  G +   R+S I
Sbjct: 181 VTDVLADCKGDILVTGHTDDRPIDSVKFRSNWDLSAARAVSVVHRLVLDGRLDASRVSAI 240

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340
            G A  R  + +D     + NRR++I +E+
Sbjct: 241 -GQAETRPLVPNDTDEHRAQNRRVEIHIEN 269


>gi|217959212|ref|YP_002337760.1| flagellar motor protein MotS [Bacillus cereus AH187]
 gi|217063689|gb|ACJ77939.1| putative chemotaxis protein MotB [Bacillus cereus AH187]
          Length = 225

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK       KKR+ DL KK+ +     V +N + 
Sbjct: 43  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA----YVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155

Query: 274 ASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|229195941|ref|ZP_04322694.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228587500|gb|EEK45565.1| OmpA/MotB domain protein [Bacillus cereus m1293]
          Length = 213

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ DL KK+ + 
Sbjct: 20  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA- 78

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ K+       
Sbjct: 79  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 132

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD+ P  N     NW LS  RA +    L++    ED+     G+A  +  
Sbjct: 133 PNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 192

Query: 322 IASD-PMN-SANRRIDILVED 340
           + +D P N   NRR+ I +++
Sbjct: 193 VPNDSPQNWEKNRRVVIYIKE 213


>gi|71906384|ref|YP_283971.1| flagellar motor protein MotD [Dechloromonas aromatica RCB]
 gi|71846005|gb|AAZ45501.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 257

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++++++++++A  I   L  LVA   V+ +    T  G+ I I D     +F    +  
Sbjct: 93  KIEQRQKMKNMAGDIMQALQPLVAQGKVRLL---ETSRGVTIEINDS---ILFPAGQAKL 146

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
              +I  +  I +VLA S   I+I GHTD  P        NW LS  RA +  ++    G
Sbjct: 147 QSASISAMLAIAQVLAASDFPITIEGHTDNVPIATAQFPSNWELSAMRATTVLRLFNDGG 206

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           V  +R++ I G+   R    +      + NRR+ IL++  +
Sbjct: 207 VGAERLTAI-GYGETRPLETNTTVEGRARNRRVSILIDSNR 246



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADF+T+L AFF+VM+ I++ ++   K +        KN+     G          
Sbjct: 16  WLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSNSLTNAFKNVTGQPGGQPIAVIQGAP 75

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
               +     D+   +  ++ +    N      +    +      +  E  +      ++
Sbjct: 76  PIPPRPIAKPDKLPDQKKIEQRQKMKNMAGDIMQALQPLVAQGKVRLLETSRGVTIEIND 135

Query: 153 KGKDLCKSTDLEKS 166
                     L+ +
Sbjct: 136 SILFPAGQAKLQSA 149


>gi|315649793|ref|ZP_07902876.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
 gi|315274767|gb|EFU38148.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
          Length = 270

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 105/314 (33%), Gaps = 73/314 (23%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+ FF+VM+ ++  D +  K + Q           +   I +  +    
Sbjct: 22  WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQAT----FQSGDSILEMGSGITG 77

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           ++                                          + ++   + ++T D E
Sbjct: 78  TADT---------------------------------------ENHKNPPPQTAVTEDKE 98

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           +       T+ E +   +E                  + L +    I   +     + + 
Sbjct: 99  EDNGEAPLTERELAFRAQE------------------EELANFMGLIQQYVK---DNQLE 137

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           + +       GI I++ D     +FD   +        VL K+  +       +SI GHT
Sbjct: 138 EDIFISDEPQGIAITLSD---RFLFDVGKAELKSGAAPVLGKLASLFGDLNTTVSIEGHT 194

Query: 273 DASPF--RNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           D  P    +  +DNW LS  RA S     L  S +      + +G+A  R    +     
Sbjct: 195 DNVPIGRHSSYKDNWELSGARAMSVLRFFLEDSKLDPA-GFQYAGYADTRPAADNATPEG 253

Query: 328 NSANRRIDILVEDR 341
              NRR++I V  +
Sbjct: 254 KQKNRRVEITVLRQ 267


>gi|90415361|ref|ZP_01223295.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
 gi|90332684|gb|EAS47854.1| flagellar motor protein [marine gamma proteobacterium HTCC2207]
          Length = 399

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 127/376 (33%), Gaps = 65/376 (17%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75
                +   SW   +AD  T+LMAFF+++      +    K +               K 
Sbjct: 28  CPPCKSGAPSWMATFADMATLLMAFFVLLLSFAEVNVPKFKQVAGSIASAFGVARIVPKI 87

Query: 76  LMTASKGIFDEQNPPERSSQNKIDL--SIDEHITKNSVDLKIGSTNQKKQYQRL------ 127
            + A+  +  ++  P R+    ID      E IT+  V  K  + +   + Q        
Sbjct: 88  SIPAATSLVTQEYTPSRAEATVIDQKRQRSEDITQEFVVKKTETEDADFKTQEEFRSVTE 147

Query: 128 ---------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE- 171
                          E+N   +    +S         ++  G      T +E +    E 
Sbjct: 148 ALAEQIEQGQVQVTIEDNKVVVELRAESASGGQDYDNEASGGGGPISQTTIEVASKVVEL 207

Query: 172 ------------------------NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                                                A +R++ + D  ++I  +L+  +
Sbjct: 208 QSKISTEIQVRKQQLASGEQSGGLESDSDSNQSSGGSADQRRQDIDDKYQQIRLSLAADI 267

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            + +      E  R G  I I+   +   F   SS   P    +L ++G  L+ ++  + 
Sbjct: 268 NNGLA-----EVERDGDKI-IVRLASQGSFVSGSSNLQPGFTGLLTRVGNSLSVTSGKVR 321

Query: 268 IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + GHTD  P     R   NW LS  R+ S       +   +     ++GFA  R   +++
Sbjct: 322 VEGHTDNIPVAFSERFNSNWDLSAARSASVADFFADNSELDQSAITVAGFADTRPIDSNN 381

Query: 326 P--MNSANRRIDILVE 339
                + NRRI+++V+
Sbjct: 382 TAAGRARNRRIEVIVD 397


>gi|229155299|ref|ZP_04283410.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
 gi|228628224|gb|EEK84940.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
          Length = 213

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D+E+   K     +P +S EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 31  KMLEKFSDVEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 86

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + IID     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 87  QVNVYREDTGVSVVIIDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 143

Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 144 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|206974802|ref|ZP_03235717.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|222095352|ref|YP_002529412.1| flagellar motor protein mots [Bacillus cereus Q1]
 gi|206746821|gb|EDZ58213.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|221239410|gb|ACM12120.1| chemotaxis protein MotB, putative [Bacillus cereus Q1]
          Length = 225

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK       KKR+ DL KK+ +     V +N + 
Sbjct: 43  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA----YVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155

Query: 274 ASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
           + P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N   
Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215

Query: 331 NRRIDILVED 340
           NRR+ I +++
Sbjct: 216 NRRVVIYIKE 225


>gi|30019773|ref|NP_831404.1| flagellar motor protein MotS [Bacillus cereus ATCC 14579]
 gi|229127054|ref|ZP_04256053.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|29895318|gb|AAP08605.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579]
 gi|228656407|gb|EEL12246.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
          Length = 226

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 13/230 (5%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G      ++     ++  L  +        S     +  K L K +D E+   K     +
Sbjct: 5   GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTEQVDAKVMENTI 64

Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           P +S EK    M  KKR+ +L KK+ +     V +N +  V      TG+ + I+D    
Sbjct: 65  PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292
            +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  R A
Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
              + ++    V + R++ + G+A  +  + +D P N   NRR+ I +++
Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 226


>gi|228926763|ref|ZP_04089831.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832876|gb|EEM78445.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 227

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ + 
Sbjct: 34  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKAY 93

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L      N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 94  LDN----NGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227


>gi|229096214|ref|ZP_04227187.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
 gi|229102326|ref|ZP_04233035.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|229115169|ref|ZP_04244579.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228668309|gb|EEL23741.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228681227|gb|EEL35395.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|228687174|gb|EEL41079.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
          Length = 213

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P ++ EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 31  KMLEKFSDAEQVDAKVMENTIPDITHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 86

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 87  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIMSQLVGFFQSVPNPIVVEGHTD 143

Query: 274 ASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 144 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 202

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 203 KNRRVVIYIKE 213


>gi|65318994|ref|ZP_00391953.1| COG1360: Flagellar motor protein [Bacillus anthracis str. A2012]
 gi|228933012|ref|ZP_04095875.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826613|gb|EEM72384.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 227

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ + 
Sbjct: 34  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 93  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227


>gi|30261729|ref|NP_844106.1| flagellar motor protein MotS [Bacillus anthracis str. Ames]
 gi|47526945|ref|YP_018294.1| flagellar motor protein MotS [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184555|ref|YP_027807.1| flagellar motor protein MotS [Bacillus anthracis str. Sterne]
 gi|165869455|ref|ZP_02214114.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488]
 gi|167633407|ref|ZP_02391732.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442]
 gi|167639130|ref|ZP_02397403.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193]
 gi|170686155|ref|ZP_02877377.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465]
 gi|170706447|ref|ZP_02896907.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389]
 gi|177650324|ref|ZP_02933291.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174]
 gi|190566282|ref|ZP_03019200.1| putative chemotaxis protein MotB [Bacillus anthracis
           Tsiankovskii-I]
 gi|218902843|ref|YP_002450677.1| putative chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225863587|ref|YP_002748965.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|227815517|ref|YP_002815526.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|229604338|ref|YP_002866130.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248]
 gi|254683216|ref|ZP_05147077.1| flagellar motor protein MotS [Bacillus anthracis str. CNEVA-9066]
 gi|254723805|ref|ZP_05185591.1| flagellar motor protein MotS [Bacillus anthracis str. A1055]
 gi|254734568|ref|ZP_05192280.1| flagellar motor protein MotS [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740977|ref|ZP_05198665.1| flagellar motor protein MotS [Bacillus anthracis str. Kruger B]
 gi|254755218|ref|ZP_05207252.1| flagellar motor protein MotS [Bacillus anthracis str. Vollum]
 gi|254759755|ref|ZP_05211779.1| flagellar motor protein MotS [Bacillus anthracis str. Australia 94]
 gi|30255957|gb|AAP25592.1| putative chemotaxis protein MotB [Bacillus anthracis str. Ames]
 gi|47502093|gb|AAT30769.1| putative chemotaxis protein MotB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178482|gb|AAT53858.1| chemotaxis protein MotB, putative [Bacillus anthracis str. Sterne]
 gi|164714895|gb|EDR20413.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488]
 gi|167512920|gb|EDR88293.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193]
 gi|167531445|gb|EDR94123.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442]
 gi|170128545|gb|EDS97412.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389]
 gi|170669852|gb|EDT20593.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465]
 gi|172083468|gb|EDT68528.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174]
 gi|190562417|gb|EDV16384.1| putative chemotaxis protein MotB [Bacillus anthracis
           Tsiankovskii-I]
 gi|218535723|gb|ACK88121.1| putative chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225787259|gb|ACO27476.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|227002562|gb|ACP12305.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|229268746|gb|ACQ50383.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248]
          Length = 225

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ + 
Sbjct: 32  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 90

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 91  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 144

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 145 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 203

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 204 VVPNDSPQNWEKNRRVVIYIKE 225


>gi|302389670|ref|YP_003825491.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200298|gb|ADL07868.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 248

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + + +T   ++ +N +KG+  E    G+ I  I+     +FD   +    +   VL KI 
Sbjct: 96  ENLENTFQEIINENNLKGIRVEREERGLAIRFIE---GALFDSGKAYLREDARQVLDKIA 152

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L      I + GHTD  P  N     NW LS  RA +  +  ++       +   +G+
Sbjct: 153 PILKKIQRPIRVEGHTDNVPIHNSEFPSNWELSTTRAVNVVRYFIEKHNISPHMISAAGY 212

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
             +     +D     + NRR+DI++ +
Sbjct: 213 GEYHPIAPNDSEKNRALNRRVDIIILN 239



 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 17  IKKK--VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK----KAIEQYFN 70
           ++++     D  P     W   Y D +T ++ FF++++ ++  D         +++  F 
Sbjct: 4   VRRRNGGGSDSQPPGAPLWMTTYGDLITQILIFFVLLFALSNIDAKKFDMAMASLQGSFG 63

Query: 71  PFGKNLMTASKGIFDEQ-------NPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKK 122
                    +KG  +            ER     ++ +  E I +N++  +++    +  
Sbjct: 64  LLDGGTTMINKGFIEGDALGGNLSGAGERREFENLENTFQEIINENNLKGIRVEREERGL 123

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
             + +E  +F    +   E  +  L + +   K + +   +E   +
Sbjct: 124 AIRFIEGALFDSGKAYLREDARQVLDKIAPILKKIQRPIRVEGHTD 169


>gi|42780820|ref|NP_978067.1| flagellar motor protein MotS [Bacillus cereus ATCC 10987]
 gi|42736740|gb|AAS40675.1| chemotaxis protein MotB, putative [Bacillus cereus ATCC 10987]
 gi|324325747|gb|ADY21007.1| flagellar motor protein MotS [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ DL KK+ +     V +N + 
Sbjct: 43  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA----YVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ K+          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155

Query: 274 ASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
           + P  N     NW LS  RA +    L++    ED+     G+A  +  + +D P N   
Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215

Query: 331 NRRIDILVED 340
           NRR+ I +++
Sbjct: 216 NRRVVIYIKE 225


>gi|118477164|ref|YP_894315.1| flagellar motor protein MotS [Bacillus thuringiensis str. Al Hakam]
 gi|228945331|ref|ZP_04107686.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229183920|ref|ZP_04311136.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|301053265|ref|YP_003791476.1| flagellar motor protein [Bacillus anthracis CI]
 gi|118416389|gb|ABK84808.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam]
 gi|228599572|gb|EEK57176.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|228814303|gb|EEM60569.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|300375434|gb|ADK04338.1| flagellar motor protein [Bacillus cereus biovar anthracis str. CI]
          Length = 227

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ + 
Sbjct: 34  ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 93  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227


>gi|308126360|ref|ZP_07663727.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
 gi|308109365|gb|EFO46905.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
          Length = 161

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293
           MF +  +   P    +L  +  +    T  + I GHTDA PF  R   + NW LS  RA 
Sbjct: 1   MFSRGGAELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRAD 60

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            A + L++ G+ +DR+ +++G +   L    +P +S NRRI++ +  
Sbjct: 61  VARKTLVEGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 107


>gi|49480957|ref|YP_035848.1| flagellar motor protein MotS [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143729|ref|YP_083099.1| flagellar motor protein MotS [Bacillus cereus E33L]
 gi|196033392|ref|ZP_03100804.1| putative chemotaxis protein MotB [Bacillus cereus W]
 gi|196039124|ref|ZP_03106431.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|196045046|ref|ZP_03112279.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|49332513|gb|AAT63159.1| chemotaxis motB protein, OmpA family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51977198|gb|AAU18748.1| chemotaxis motB protein, OmpA family [Bacillus cereus E33L]
 gi|195993826|gb|EDX57782.1| putative chemotaxis protein MotB [Bacillus cereus W]
 gi|196024048|gb|EDX62722.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|196030269|gb|EDX68869.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 43  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 155

Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 156 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|228984812|ref|ZP_04144984.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775010|gb|EEM23404.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 43  KMLEKFSDAEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 98

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 99  QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 155

Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 156 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 215 KNRRVVIYIKE 225


>gi|229172375|ref|ZP_04299934.1| OmpA/MotB domain protein [Bacillus cereus MM3]
 gi|228610846|gb|EEK68109.1| OmpA/MotB domain protein [Bacillus cereus MM3]
          Length = 227

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           + L K +D+E+   K     +P +S EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 45  QMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMVSKKRMDELYKKLKA----YVDNNGIS 100

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 101 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 157

Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N  
Sbjct: 158 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 216

Query: 330 ANRRIDILVED 340
            NRR+ I +++
Sbjct: 217 KNRRVVIYIKE 227


>gi|229029408|ref|ZP_04185491.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228731867|gb|EEL82766.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
          Length = 227

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K +D+E+   K     +P +S EK    M  KKR+ DL KK+ + 
Sbjct: 34  ATSKQDTVKLSKMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMISKKRMDDLYKKLKA- 92

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V  N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 93  ---YVDSNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD+ P  N     NW LS  RA +    L++    ED+     G+A  +  
Sbjct: 147 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 206

Query: 322 IASD-PMN-SANRRIDILVED 340
           + +D P N   NRR+ I +++
Sbjct: 207 VPNDSPQNWEKNRRVVIYIKE 227


>gi|134300281|ref|YP_001113777.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134052981|gb|ABO50952.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1]
          Length = 261

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETT 220
             +  +       +P  S+ K L    ++  Q   +KI   +   V  N + G V     
Sbjct: 58  GSQSIMESGGPSMVPGASESKELDTAMEQIEQQKMEKIKKQIQEYVDKNGLSGKVTVAIE 117

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279
             G+++S  D     +F    +  +P +  ++ K+G +L+ +   I + GHTD  P   N
Sbjct: 118 ERGVVVSFQD---VVLFPLGVADLVPHSQGIVDKVGAILSQTPNYIRVEGHTDNLPIQTN 174

Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
               NW LSL R+ S    L+  S +  DR+S  +G+  +R +    SD     NRR+DI
Sbjct: 175 KFPSNWELSLARSASVVHRLINFSHIPPDRLSA-TGYGEYRPRRANDSDANRQQNRRVDI 233

Query: 337 LVEDRQ 342
           +V   +
Sbjct: 234 IVLRTK 239



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +K   +    N   W I Y+D +T+L+ FF+VM+ ++  D +   AI           M 
Sbjct: 2   RKRGQEPEKENNERWLITYSDLITLLLIFFVVMYTLSKVDANKYHAIASSL----AKTMG 57

Query: 79  ASKGIFDEQNP---PERSSQNKIDLSIDE 104
            S+ I +   P   P  S   ++D ++++
Sbjct: 58  GSQSIMESGGPSMVPGASESKELDTAMEQ 86


>gi|114565809|ref|YP_752963.1| hypothetical protein Swol_0240 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336744|gb|ABI67592.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 281

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-------QDLAKKISSTLSGLVADN 210
            +   + + ++ +     P    +    +   KR+       +DL    +          
Sbjct: 70  TQGPSMVEGLSGQMLPEGPGTIPDNQGQLDEVKRMIAEFIKAEDLTADEAQKGGSTSTTR 129

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           +   ++      G++IS  D     +F   S    P    ++Q+IG  L      I + G
Sbjct: 130 LSDNLIVYEQERGLVISFKDTM---LFASGSDELTPRAREIIQQIGGALLKLPNFIRVEG 186

Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           HTD  P        NW LS+ RA +   VL ++         I G+  +R  +A+  D  
Sbjct: 187 HTDNRPINTAKFPSNWELSVLRASNVVHVLNENARIPAERLSIIGYGENRPLVANDSDEG 246

Query: 328 NSANRRIDILVEDRQ 342
            + NRR+DI++  ++
Sbjct: 247 RAMNRRVDIVILKKK 261


>gi|312879597|ref|ZP_07739397.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782888|gb|EFQ23286.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260]
          Length = 242

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             A    KR +   + ++  L  L   + + K +  +  + G+ +S+ +Q    +F    
Sbjct: 79  QDAGDANKRTEQFKQGVAQQLQALAEREGLQKEITVKVNQRGVTVSLSEQ---FLFAPGG 135

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300
           +   P +  VL KIG++L      +++ GHTD +P R     DNW LS  RA      L 
Sbjct: 136 ADLSPLSRRVLFKIGQILKTFPNQLAVEGHTDNAPLRGGLYKDNWGLSAGRAAVVASYLA 195

Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            + G+S +R+  + G+   +  + +D     + NRR+D+++  +
Sbjct: 196 GTVGLSPNRLEAV-GYGSAKPIVPNDTPEHRALNRRVDLVLLTQ 238



 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K            +   Y D +T+L+ FF+ ++  ++ D    K +   F      L
Sbjct: 1   MARKKKEAQGSAGAPLFMATYGDMVTLLLTFFVFLYSFSSIDVQKFKKMMFSFQGALGVL 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                   D         Q+  D +      K  V  ++ +  +++  Q+ 
Sbjct: 61  PGGKTIQEDSGVYQGYVGQDAGDANKRTEQFKQGVAQQLQALAEREGLQKE 111


>gi|91776302|ref|YP_546058.1| OmpA/MotB [Methylobacillus flagellatus KT]
 gi|91710289|gb|ABE50217.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 267

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 7/215 (3%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +     L+++  S    N+    S    D   + D         +  +  L   ++   +
Sbjct: 43  DQKYKELTSALGSAFSGNTNDNTSSPSPDTPPAADRHVLKTTPTSSLIHALPLSRLQKER 102

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           ++K  + ++  I++    L        +    T  G+ I I D     +F   S+    E
Sbjct: 103 QRKEQESISAMIATLNRALGNLATNGKISISKTSLGVRIDIAD---GVLFQAGSAAIKAE 159

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306
               + +I ++LA     I + GHTD  P  N     NW LS  RA S  + ++++G+  
Sbjct: 160 ADAPISEITQILADQQYAIQVEGHTDNVPISNAQFPSNWELSSMRATSVVRKMIENGIDA 219

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            R+S + G++  +    +      + NRR+ I+V 
Sbjct: 220 ARLSAV-GYSDTQPIADNQTAEGRAQNRRVSIMVL 253


>gi|306820125|ref|ZP_07453773.1| chemotaxis protein MotB [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551903|gb|EFM39846.1| chemotaxis protein MotB [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 250

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 83/188 (44%), Gaps = 14/188 (7%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D   +++ E       + + +  ++      + + K+I   L     + + K +      
Sbjct: 61  DGGNTLSSENKIEKGSVFEGQSSSVAESNNFEKMEKQIKEYLEE---NKLEKQISISNEE 117

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFR 278
            G+++   D     +FD+ S+   P++  VL+ +G +L         +S+ GHTD  P  
Sbjct: 118 EGLVLRFQDS---SLFDQGSATLKPQSYNVLKYVGGILKSKNFKDKFVSVEGHTDNVPIS 174

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
               + NW LS +RA +  + L+++ G+   R+   +G+  +     +D     + NRR+
Sbjct: 175 TSTHQSNWELSSNRASNVVRYLIENQGIDPKRL-STAGYGEYHPVAPNDTPANMAKNRRV 233

Query: 335 DILVEDRQ 342
           DI++   +
Sbjct: 234 DIMILRTK 241


>gi|89895779|ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51]
 gi|89335227|dbj|BAE84822.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 9/195 (4%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E G      + +E     +      P   E               + I   L    ADN 
Sbjct: 64  EIGASPSGPSLIETYPTNKPQEGKEPEDGEGNGDGTGADMENMTIETIKQKLDKFAADNG 123

Query: 212 VK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           ++  ++      G++ISI D     +F+  +++  P+   +L KI  VLA +   I + G
Sbjct: 124 IETKLVSSIEERGLVISIQDT---LLFESGAAVITPKAREILDKINNVLASAPNYIKVEG 180

Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           HTD  P   N    NW LS+ RA +   ++ +  +  +++S  +G+  +R   A+D    
Sbjct: 181 HTDNLPINTNRFPSNWELSVLRATNVVHIMQEI-IPAEQLSA-TGYGEYRPLAANDTEAG 238

Query: 328 NSANRRIDILVEDRQ 342
            + NRR+D+++   +
Sbjct: 239 RARNRRVDLVILRSK 253



 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 43/126 (34%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   +   +N   W + Y+D +T+LM FF+VM+ ++  D +  ++I +  +      
Sbjct: 1   MARKRIEEPEKDNSERWLLTYSDLITLLMIFFVVMYSMSKVDAEKFQSIAESLSVALGGG 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G          +          E           G+  +    + ++  +   + 
Sbjct: 61  TRVEIGASPSGPSLIETYPTNKPQEGKEPEDGEGNGDGTGADMENMTIETIKQKLDKFAA 120

Query: 137 SQQSEH 142
               E 
Sbjct: 121 DNGIET 126


>gi|213583424|ref|ZP_03365250.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 142

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM 300
              P    +L+ I  VL      IS+ GHTD  P+ N      NW LS DRA ++ + L+
Sbjct: 1   EVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELV 60

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             G+   ++ ++ G A         P ++ NRRI +LV ++Q 
Sbjct: 61  AGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 103


>gi|147678453|ref|YP_001212668.1| flagellar motor protein [Pelotomaculum thermopropionicum SI]
 gi|146274550|dbj|BAF60299.1| flagellar motor protein [Pelotomaculum thermopropionicum SI]
          Length = 255

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           ++           +S   E   +         L  +   A      L+ L +++   +  
Sbjct: 51  AIAMSLASAMGGGQSVMTEPGASLAPGVSGSSLPADLGQAAAEAADLESLRRELQEYIEQ 110

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
              + +   V       G+++S +D     +F   S+   PE    + KIG++L  +   
Sbjct: 111 ---NGLTGRVSVNLEERGLVLSFLD---VALFPLGSARLTPEAQETVGKIGKILLKAPNY 164

Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323
           I + GHTD  P        NW LS+ RA S  Q L+ K     +R+S  +G+   R ++ 
Sbjct: 165 IRVEGHTDNLPINTREFPSNWELSVARATSVVQELIHKLNFPPERLSA-TGYGEFRPRMP 223

Query: 324 SD--PMNSANRRIDILVEDRQ 342
           +D       NRR+D+++   +
Sbjct: 224 NDSAEHRQQNRRVDLVILRSK 244



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 15  IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           I  K+  +          W + Y+D +T+LM FF+VM+ +++ +    KAI         
Sbjct: 2   IRKKQGQSQKSGKAGHERWLLTYSDLITLLMIFFVVMYSLSSINARKFKAIAMSL----A 57

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSID 103
           + M   + +  E         +   L  D
Sbjct: 58  SAMGGGQSVMTEPGASLAPGVSGSSLPAD 86


>gi|229058360|ref|ZP_04196744.1| OmpA/MotB domain protein [Bacillus cereus AH603]
 gi|229166569|ref|ZP_04294321.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228616823|gb|EEK73896.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228719869|gb|EEL71459.1| OmpA/MotB domain protein [Bacillus cereus AH603]
          Length = 225

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-R 188
           ++  L  +        S     +  K L K +D E+   K     +P +S EK       
Sbjct: 18  DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVS 77

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ +L KK+ +     V +N V  V      TG+ I I+D     +FD   +   PE 
Sbjct: 78  KKRMDELYKKLKA----YVDNNGVSQVNVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306
             V+ ++          I + GHTD+ P  N     NW LS  R A   + ++    V +
Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190

Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            R++ + G+A  +   ++D P N   NRR+ I +++
Sbjct: 191 KRLAAV-GYADTKPVASNDSPQNWEKNRRVVIYIKE 225


>gi|206970743|ref|ZP_03231695.1| putative chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218233445|ref|YP_002366413.1| flagellar motor protein MotS [Bacillus cereus B4264]
 gi|218896660|ref|YP_002445071.1| putative chemotaxis protein MotB [Bacillus cereus G9842]
 gi|296502310|ref|YP_003664010.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171]
 gi|206734379|gb|EDZ51549.1| putative chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218161402|gb|ACK61394.1| putative chemotaxis protein MotB [Bacillus cereus B4264]
 gi|218544664|gb|ACK97058.1| putative chemotaxis protein MotB [Bacillus cereus G9842]
 gi|296323362|gb|ADH06290.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G      ++     ++  L  +        S     +  K L K +D  +   K     +
Sbjct: 4   GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 63

Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           P +S EK    M  KKR+ +L KK+ +     V +N +  V      TG+ + I+D    
Sbjct: 64  PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 116

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292
            +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  R A
Sbjct: 117 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 176

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
              + ++    V + R++ + G+A  +  + +D P N   NRR+ I +++
Sbjct: 177 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 225


>gi|253996642|ref|YP_003048706.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983321|gb|ACT48179.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 271

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 13/199 (6%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISST 202
           S    S   +   +     K I +  +  + PL    + + K ++    +AK   ++S+ 
Sbjct: 60  SGNGSSGVNQTSTEKGLGAKGITEANSSIVKPLPLSHLYSEKLRRERDSMAKTGVEVSNK 119

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ ++ +  ++ +    T  GI I I D     +F   S+   P    ++ +I  ++  +
Sbjct: 120 LAPMINEGKIQVI---QTSRGIRIDIQDN---LLFGAGSADLSPTANAIISEIVPLIKDN 173

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD +P  N     NW LS  RA S  ++L   G+SE R+S  +G    +  
Sbjct: 174 QRKIQVEGHTDNTPIHNATFFSNWELSAVRASSVVRLLSALGISEQRLSA-TGLGASQPI 232

Query: 322 --IASDPMNSANRRIDILV 338
               S+   + NRR+ I++
Sbjct: 233 SENESEAGRAKNRRVSIII 251


>gi|228914307|ref|ZP_04077922.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845301|gb|EEM90337.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 227

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202
             S     +  K L K ++ E+   K     +P +S EK    M  KKR+ +L KK+ + 
Sbjct: 34  ATSKQDAVKLSKMLEKFSNTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N +  V      TG+ + I+D     +FD   +   PE   ++ ++       
Sbjct: 93  ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205

Query: 321 KIASD-PMN-SANRRIDILVED 340
            + +D P N   NRR+ I +++
Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227


>gi|254519159|ref|ZP_05131215.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226912908|gb|EEH98109.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 242

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 18/206 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           +    S+      G  +  S +   S + E+    P +  E+      + ++ D+ K + 
Sbjct: 44  KQLATSMGDVFIGGYSVLGSAENSGSSSDEQGELKPLVQTEEEKLQGIESQVNDIVKDLE 103

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                     +   V       G++IS  D      FD + +    E    L  +  +L 
Sbjct: 104 ----------LEGSVTTSIEERGLIISFTDN---VFFDSAKADIKEELKPKLISVSNILN 150

Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHH 318
                + + GHTD  P        NW+LS  RA +  + L+  G +S  R+S + G+  +
Sbjct: 151 KIDNYVRVEGHTDNLPISTSDYHSNWQLSSVRASNVVEFLISYGSISPSRLSAV-GYGEY 209

Query: 319 RLKIAS--DPMNSANRRIDILVEDRQ 342
           R    +  +   + NRR+DIL+ + +
Sbjct: 210 RPVADNTAEEGRAKNRRVDILILNNK 235



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KK+V     P N   W + Y+D +T+LM FF+V++  ++ ++   K +           
Sbjct: 1   MKKRVEK---PENHERWLLTYSDLITLLMIFFVVLYSASSVNESKYKQLATSMGDVFIGG 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEH 105
            +      +  +  +   + K  +  +E 
Sbjct: 58  YSVLGSAENSGSSSDEQGELKPLVQTEEE 86


>gi|75760652|ref|ZP_00740680.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228900309|ref|ZP_04064539.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
 gi|228907361|ref|ZP_04071219.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|228920439|ref|ZP_04083784.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228938842|ref|ZP_04101442.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228952108|ref|ZP_04114203.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228958007|ref|ZP_04119744.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228971723|ref|ZP_04132344.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978332|ref|ZP_04138709.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|229043482|ref|ZP_04191192.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|229069280|ref|ZP_04202570.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|229078910|ref|ZP_04211462.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|229109185|ref|ZP_04238784.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|229144340|ref|ZP_04272746.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|229149929|ref|ZP_04278157.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|229178137|ref|ZP_04305508.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|229189825|ref|ZP_04316836.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|74491866|gb|EAO55054.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228593633|gb|EEK51441.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228605267|gb|EEK62717.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|228633610|gb|EEK90211.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|228639127|gb|EEK95551.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|228674195|gb|EEL29440.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|228704324|gb|EEL56758.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228713767|gb|EEL65652.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|228725860|gb|EEL77107.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|228781349|gb|EEM29550.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228787813|gb|EEM35771.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228801714|gb|EEM48594.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807640|gb|EEM54164.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228820691|gb|EEM66716.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228839069|gb|EEM84365.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852222|gb|EEM97018.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|228859344|gb|EEN03774.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G      ++     ++  L  +        S     +  K L K +D  +   K     +
Sbjct: 5   GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 64

Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           P +S EK    M  KKR+ +L KK+ +     V +N +  V      TG+ + I+D    
Sbjct: 65  PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292
            +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  R A
Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
              + ++    V + R++ + G+A  +  + +D P N   NRR+ I +++
Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 226


>gi|163939534|ref|YP_001644418.1| flagellar motor protein MotS [Bacillus weihenstephanensis KBAB4]
 gi|163861731|gb|ABY42790.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 227

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISST 202
             S     +  K L K +D E+   K     +P +S EK       KKR+ +L KK+ + 
Sbjct: 34  ATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVSKKRMDELYKKLKA- 92

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
               V +N V  V      TGI I I+D     +FD   +   PE   V+ ++       
Sbjct: 93  ---YVDNNGVSQVNVYREDTGISIVIVDN---LIFDTGDANVKPEAKEVISQLVGFFQSV 146

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              I + GHTD+ P  N     NW LS  R A   + ++    V + R++ + G+A  + 
Sbjct: 147 PNPIVVEGHTDSRPIHNENFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205

Query: 321 KIASD-PMN-SANRRIDILVED 340
             ++D P N   NRR+ I +++
Sbjct: 206 VASNDSPQNWEKNRRVVIYIKE 227


>gi|224825740|ref|ZP_03698844.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224601964|gb|EEG08143.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 271

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
                T    ++ +         + +    +K + RL  LA  +   +  LV       V
Sbjct: 66  QTTPPTGGANTMIEVAQNKPVAKAVKGEQQLKEQARLGSLASDLQKVMEPLVKGG---QV 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
               +  G+ I I D     +F  + + P P+++ VL ++ +VL+     I++ G TD  
Sbjct: 123 KITQSPKGVTIEIRDS---ALFPIAQAQPAPQSLQVLAQMAKVLSQVDNPITVEGFTDNI 179

Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
           P RN     NW LS  RA S  ++ +++G++  R+  + G A +     +  +   ++NR
Sbjct: 180 PIRNTFYPSNWELSAARAGSVVRLFVENGIAPARLVAV-GRAENLPVADNTSEEGRASNR 238

Query: 333 RIDILVED 340
           R+ I V  
Sbjct: 239 RVSITVRS 246



 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 20/204 (9%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   +D   N   W + YADF+T+L AFF+VM+ I++ ++   + +         + 
Sbjct: 1   MARRRRSEDEHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSSAI----VDA 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 I  +  PP   +   I       + +N    K     Q+ + Q    ++     
Sbjct: 57  FRTGTTISLQTTPPTGGANTMI------EVAQNKPVAKAVKGEQQLKEQARLGSLASDLQ 110

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  K    + ++  K +         I   ++   P    +   A +  + L  +A
Sbjct: 111 KVMEPLVKGGQVKITQSPKGVT--------IEIRDSALFPIAQAQP--APQSLQVLAQMA 160

Query: 197 KKISSTLSGLVADNIVKGVLFETT 220
           K +S   + +  +     +    T
Sbjct: 161 KVLSQVDNPITVEGFTDNIPIRNT 184


>gi|284989545|ref|YP_003408099.1| OmpA/MotB domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284062790|gb|ADB73728.1| OmpA/MotB domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 313

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 105/312 (33%), Gaps = 62/312 (19%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YAD MT+L+  F+V++ ++  D     A+               KG+      P  
Sbjct: 26  WLVSYADMMTLLLVLFVVLYAMSQVDQQKFAALA--------------KGLAASFGGPVT 71

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                            +VD+       +                               
Sbjct: 72  VQPGPTPEGSVLDGLPGAVDIASAIVPDQ------------------------------- 100

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                       +    +       L++ + +A + +   +DL++      + L A    
Sbjct: 101 ----------TVEQAEVDAAAAQAALAEARQVAAEARAEYEDLSEVREQIEAALAAAGHA 150

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
               FE    G+++ I+   +  +FD   ++  PE   +L  I   L      + + GH 
Sbjct: 151 GAARFEIDERGLVVHIV--ADQVLFDAEQAVLRPEGRQILDAIAPTLRGLPNSLGVEGHA 208

Query: 273 DASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN- 328
           +  P         NW LS  RA +  + L   GV   R+   +G++  R  +  +DP + 
Sbjct: 209 NHLPVTPGGIWPSNWELSAYRATTVVRYLTTGGVPGARMVA-NGYSDTRPLVPPTDPNSI 267

Query: 329 SANRRIDILVED 340
           S NRR+D++V  
Sbjct: 268 SVNRRVDVVVLS 279


>gi|254517026|ref|ZP_05129084.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
 gi|219674531|gb|EED30899.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
          Length = 270

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 109/324 (33%), Gaps = 69/324 (21%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    ++ +N   W + YADF+T+L AFF+VM+  +A +    + +              
Sbjct: 3   RRKPPESVDNHDRWLVSYADFITLLFAFFVVMYSTSAVNVGDFRVLSDSI----VQAFGL 58

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
               FD   P                                                  
Sbjct: 59  PGVSFDPSRPNGDG---------------------------------------------- 72

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                + L        D      L+ + N           +  +  +  ++ +  +   +
Sbjct: 73  --TSSSRLGIPQAAVADEAPRVPLQSAANARTP-------EAALGDIASEQEMTGVEAAV 123

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +++  L+A +             + I I       +F   S   L  +I +L+++ + L
Sbjct: 124 QTSIGDLIAPD---RFAVTGNDKWLEIKI---PARMLFPSGSRSLLASSIPMLRRLADTL 177

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + ++GHTD  P RN     NW LS  RA +  +V  + GV   ++S + GF  +
Sbjct: 178 KALPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAAIARVFEEEGVDPVKLSAV-GFGPN 236

Query: 319 RLK--IASDPMNSANRRIDILVED 340
           R     AS+   + NRR+ +LV  
Sbjct: 237 RPIADNASEEGRAENRRVVVLVRS 260


>gi|219670208|ref|YP_002460643.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219540468|gb|ACL22207.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 275

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 9/195 (4%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           E G      + +E     +      P   E               + I   L    ADN 
Sbjct: 64  EIGASPSGPSLIETYPTNKPQEGKAPEDGEGNGDGTGADMENMTIETIKQKLDKFAADNG 123

Query: 212 VK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           ++  ++      G++ISI D     +F+  +++  P+   +L KI  VLA +   I + G
Sbjct: 124 IETKLVSSIEERGLVISIQDT---LLFESGAAVITPKAREILDKINNVLASAPNYIKVEG 180

Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           HTD  P   N    NW LS+ RA +   ++ +  +  +++S  +G+  +R   ++D    
Sbjct: 181 HTDNLPINTNRFPSNWELSVLRATNVVHIMQEI-IPAEQLSA-TGYGEYRPLTSNDTEAG 238

Query: 328 NSANRRIDILVEDRQ 342
            + NRR+D+++   +
Sbjct: 239 RARNRRVDLVILRSK 253



 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   +   +N   W + Y+D +T+LM FF+VM+ ++  D +  ++I +  +      
Sbjct: 1   MARKRIEEPEKDNSERWLLTYSDLITLLMIFFVVMYSMSKVDAEKFQSIAESLSVALGGG 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G     + P        +   +    ++      G+    +              
Sbjct: 61  TRVEIG--ASPSGPSLIETYPTNKPQEGKAPEDGEGNGDGTGADMENMTIETIKQKLDKF 118

Query: 137 SQQSEHCKNSLTRDSEKG 154
           +  +      ++   E+G
Sbjct: 119 AADNGIETKLVSSIEERG 136


>gi|229132541|ref|ZP_04261390.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
 gi|228650887|gb|EEL06873.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-R 188
           ++  L  +        S     +  K L K +D E+   K     +P +S EK       
Sbjct: 18  DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVS 77

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           KKR+ +L KK+ +     V +N V  V      TG+ I I+D     +FD   +   PE 
Sbjct: 78  KKRMDELYKKLKA----YVDNNGVSQVNVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306
             V+ ++          I + GHTD+ P  N     NW LS  R A   + ++    V +
Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190

Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            R++ + G+A  +   ++D P N   NRR+ I +++
Sbjct: 191 KRLAAV-GYADTKPVESNDSPQNWEKNRRVVIYIKE 225


>gi|150016469|ref|YP_001308723.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902934|gb|ABR33767.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 251

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 12/213 (5%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             ++++S+   NSL      G         + S +          ++    ++  +++L 
Sbjct: 38  NVDTKKSQTLANSLKIGFNSGNGENVIAVSDSSNSPP-TVIDQQNTQNNSDSIAEEEKLS 96

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D+ KK+   ++      +   V       G++IS  D      F+   S   P+    L 
Sbjct: 97  DVKKKVDDLVN---DSELKGSVTTSIQERGLIISFNDS---VFFNSGQSTIKPDWQGKLI 150

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISK 311
            I ++L      I + GHTD     N     NW+LS  RA +  + L+  G V  +R+S 
Sbjct: 151 SISKILNDIDNYIHVEGHTDNVAINNDYFHSNWQLSAVRAANVVEFLISKGNVKPERLSS 210

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           + G+  +R    ++     +ANRR+DI++ + +
Sbjct: 211 V-GYGEYRPVKDNNTEDGRAANRRVDIVILNTK 242



 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75
           +KK    +        W + Y DF+T++M FFL+M+ I+  D    + +       F   
Sbjct: 1   MKKNTKKEKDDT--ERWMLSYLDFITLMMIFFLMMYAISNVDTKKSQTLANSLKIGFNSG 58

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
                  + D  N P      +   +  + I + 
Sbjct: 59  NGENVIAVSDSSNSPPTVIDQQNTQNNSDSIAEE 92


>gi|538830|pir||F40590 motB homolog lafU - Vibrio parahaemolyticus (fragment)
          Length = 202

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 64/260 (24%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +                    
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                    +   S H  +S  +    G ++              N  +P     +    
Sbjct: 93  --------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPGTFDTQEQLA 130

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              K ++++  +I          N    V    T  G+ I + D     MF +  +   P
Sbjct: 131 ALAKVIEEMTAQI----------NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180

Query: 247 ETIVVLQKIGEVLAHSTEVI 266
               +L  +  +    T  +
Sbjct: 181 FFEDLLLALAPLFEQVTNPL 200


>gi|294828058|ref|NP_712396.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai
           str. 56601]
 gi|304570492|ref|YP_001665.2| motility protein B [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385905|gb|AAN49414.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 336

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 11/271 (4%)

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L++  K    + N         ++  I    TK+S   K      +KQ ++  + I  L
Sbjct: 73  ELLSREKEFRAKDNDLNIEKIKVLENQIAVLKTKSSNKEKELIDENEKQSKKFRDLIDGL 132

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
               + E        ++ + +   K +DLE  I          +SK K L+  +KK L  
Sbjct: 133 KEDLERERENCQKKTEALQKEYERKISDLESRI----LVLNDEISKLKHLSENQKKELDR 188

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L+ + +   + L  +     +  +     ++I+I D+ +   FD  S+    + +  L K
Sbjct: 189 LSDQANELENKLTDEIKKGQIRLKRFHDRLVINIDDKIS---FDSGSADLKKQILPALDK 245

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I E+L +    +I I GHTD  P R     DNW+LS +RA S     ++S + + R   +
Sbjct: 246 IKEILGNYPGNLIIIEGHTDNVPIRTKKFSDNWQLSGERALSVLHYFLESKILDPRNFSL 305

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +G+   +  +++D     + NRR+DI+V  R
Sbjct: 306 AGYGEFQPIVSNDTPENRALNRRVDIVVVPR 336


>gi|121533623|ref|ZP_01665450.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307614|gb|EAX48529.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 262

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L +L K++   ++    +N+   +    T  G++I I D     +F    +   PE++ 
Sbjct: 107 QLVELKKQLDRYIAE---NNLAGDIQTALTDDGLMIRIKDT---ALFASGRAELKPESLR 160

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA-YSAYQVLMKSGVSEDR 308
           +  +I  ++A   + + + GHTD  P        NW LS  RA      +L ++ +  +R
Sbjct: 161 LGTEIARMIAPLPQRVIVAGHTDNMPINTPEFPSNWDLSTVRALNFMKYMLSQAEIKPER 220

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           I  +SG+  +R   ++D     + NRR+++L+  
Sbjct: 221 I-SVSGYGEYRPVASNDTEEGRAKNRRVEVLIMR 253


>gi|119897401|ref|YP_932614.1| flagellar motor protein MotD [Azoarcus sp. BH72]
 gi|119669814|emb|CAL93727.1| flagellar motor protein MotB [Azoarcus sp. BH72]
          Length = 279

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 10/198 (5%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             +E G+ +        S             +E+    +  +R++++A++I   L+ L  
Sbjct: 61  NINESGQQIVLPPVSVMSPAAPAPAASTRSPEEEAKRQQTAQRMRNMAEEIRRVLAPLTQ 120

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           D     V       GI + I     + +F    +      +  L+ + +VLA +   I+I
Sbjct: 121 DG---QVSISEGAFGIAVEI---NASVLFAPGEATLGAPAVSALRAVAQVLAGAEFPITI 174

Query: 269 RGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
            GHTD  P  N+    NW LS  RA S  ++ ++SGV  +R++  +G+A  R    +D  
Sbjct: 175 EGHTDNIPISNLRFPSNWELSAVRASSVVRLFIESGVRAERLTA-AGYADQRPVAGNDTD 233

Query: 327 -MNSANRRIDILVEDRQG 343
              + NRR+ I++E R G
Sbjct: 234 AGRARNRRVTIMIESRVG 251


>gi|188996771|ref|YP_001931022.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931838|gb|ACD66468.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 264

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  ++   N+   V  E    G+ I I+D     +F   S+    E
Sbjct: 76  KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILD---YILFPPCSTEINQE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  I EV+  +   + + GHTD  P         NW LS  RA +  + L+ +G  
Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              +    G+A  +    ++       NRRI+I
Sbjct: 193 PPYLFSAVGYADTKPISPNNSELGRKLNRRIEI 225


>gi|237756519|ref|ZP_04585048.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691319|gb|EEP60398.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 264

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  ++   N+   V  E    G+ I I+D     +F   S+    E
Sbjct: 76  KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILD---YILFPPCSTEINQE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  I EV+  +   + + GHTD  P         NW LS  RA +  + L+ +G  
Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              +    G+A  +    ++       NRRI+I
Sbjct: 193 PPYLFSAVGYADTKPISPNNSELGRKLNRRIEI 225


>gi|255021344|ref|ZP_05293392.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969207|gb|EET26721.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus
           ATCC 51756]
          Length = 279

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 10/233 (4%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             I S N+ K     E  +   +    S     +    +     L        +      
Sbjct: 35  YAISSVNEGKYRVLSETLVSAFTGHPMSITPVQNPAESAGPTSVLKLPPLPAVAKIAATP 94

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
                +   K  A K    LQ L K++   L  L+ D     V   ++  G++I   D  
Sbjct: 95  SVAKGVVSPKAQAPKSNTDLQQLQKQMEKLLQPLIRDG---SVAIHSSALGVVI---DLN 148

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
              +F    +   PE    L  I ++L      I + G T+  P R      NW LS  R
Sbjct: 149 AKILFPSGQATLTPEAQQNLAAIAKILKTVPYQIQVNGFTNDLPIRTAQFPSNWYLSAAR 208

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           A +  ++ +  GV+ + +   +G+  +     ++     + NRR+ I+V   Q
Sbjct: 209 AVAVTELFIAEGVNPEHLVA-AGYGQYHPIEPNNTAAGLAMNRRVSIVVVAPQ 260



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 74/201 (36%), Gaps = 9/201 (4%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +   ++   N   W + YADF+T+L AFF+VM+ I++ ++   + + +            
Sbjct: 3   RRKQEEEWENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSE---TLVSAFTGH 59

Query: 80  SKGIFDEQNPPERSSQNKI-DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
              I   QNP E +    +  L     + K +    +       + Q  ++N       +
Sbjct: 60  PMSITPVQNPAESAGPTSVLKLPPLPAVAKIAATPSVAKGVVSPKAQAPKSNTDLQQLQK 119

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           Q E     L R    G     S+ L   I+       P  S +  L  + ++ L  +AK 
Sbjct: 120 QMEKLLQPLIR---DGSVAIHSSALGVVIDLNAKILFP--SGQATLTPEAQQNLAAIAKI 174

Query: 199 ISSTLSGLVADNIVKGVLFET 219
           + +    +  +     +   T
Sbjct: 175 LKTVPYQIQVNGFTNDLPIRT 195


>gi|323703350|ref|ZP_08115000.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531713|gb|EGB21602.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 263

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
                  +++ +     ++ ++ + ++I   +     + +   V       G+++S  D 
Sbjct: 74  GAAREKSNEQGMPESVEQRNMESIKRQIQDYID---KNGLSGKVTVAIEERGVVVSFQD- 129

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLD 290
               +F    +   P +  ++ KIG +L  +   I + GHTD  P R +    NW LSL 
Sbjct: 130 --VVLFPLGVADLNPSSTQIVDKIGAILHQTNNYIRVEGHTDNLPIRTSKFPSNWELSLA 187

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342
           RA S    L++ SG+  +R+S  +G+  +R      SD     NRR+DI+V   +
Sbjct: 188 RAASVVHRLIEYSGIPAERLSA-TGYGEYRPRRPNDSDANRQQNRRVDIVVLRTK 241



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KK+   +   +N   W I Y+D +T+L+ FF+VM+ ++  D +   AI           
Sbjct: 1   MKKRGGGEPEKDNKERWLITYSDLITLLLIFFVVMYTLSKIDANKYYAIASSL----AKT 56

Query: 77  MTASKGIFDEQN---PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           M  S+ I D       P  + +   +  + E + + +++        
Sbjct: 57  MGGSQSIMDNAGAAIVPGAAREKSNEQGMPESVEQRNMESIKRQIQD 103


>gi|225871803|ref|YP_002753257.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
 gi|225791684|gb|ACO31774.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196]
          Length = 262

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
            +P  +     A++ ++ L+ + +++   L+  +A      V  +    G++IS+   R 
Sbjct: 70  PVPEANPPADTALQTQENLEKMREQLQKKLAAQIA---AHQVALQLGPDGLVISL---RE 123

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
              +D  S+ P P ++  +  I   L      + I GHTD  P        NW LS  RA
Sbjct: 124 AGFYDSGSATPKPSSMGAVGIIAHELYQVPYALRIEGHTDNVPIHTAKFDSNWELSTARA 183

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            +  ++L+++ GV+  R+S  +G+A +      A+    + NRR+DI+V  
Sbjct: 184 TTMARLLIENFGVAPQRLSA-AGYAQYHPIASNATAAGRAENRRVDIIVLP 233



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72
          +++K       +    W + YADF+T+L AFF+V++  +  D   ++   Q     F   
Sbjct: 1  MRRKRHESHPNH--ERWLVSYADFITLLFAFFVVLYASSKADLRKQQQFAQSIHSAFTAL 58

Query: 73 GKNLMTA-SKGIFDEQNPPERSS 94
          G        KG   E NPP  ++
Sbjct: 59 GLFPENGHGKGPVPEANPPADTA 81


>gi|253702421|ref|YP_003023610.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251777271|gb|ACT19852.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 253

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 111/330 (33%), Gaps = 87/330 (26%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   +  PN+   W + YADF+T+L A F+ ++           A+ Q      + +
Sbjct: 1   MARKKEHEKEPNH-ERWLVSYADFITLLFAVFVTLY-----------AMSQTDKKKAEEV 48

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           + + +  F   +    +    ID      I                              
Sbjct: 49  LQSMRESFGYSSTSAGAKPTVIDTGSMSVIP----------------------------- 79

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                   + LT+   +GK      D   +    E Y L   ++ K              
Sbjct: 80  ------SMHRLTQAPRRGKSRGGEKDFRATKAAIEAYLLKVGAQAK-------------- 119

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
                             V    T+ G+++S+   +    FD  S+    ++  +L+ + 
Sbjct: 120 ------------------VSVSVTQRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVV 158

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314
             L+  +  + + GHTD  P  +     NW LS  RA +  Q L K S     +IS  +G
Sbjct: 159 SSLSSYSNGLRVEGHTDNMPISSASFPSNWELSTARATNVLQYLTKQSDFDPYKISA-AG 217

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           +  +R    +        NRR+DI++   Q
Sbjct: 218 YGEYRPVADNSEAEGRGKNRRVDIVLLSEQ 247


>gi|288942520|ref|YP_003444760.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897892|gb|ADC63728.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 279

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 99/321 (30%), Gaps = 73/321 (22%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             D P     W   +AD M+++M FF+++   +  D    K +                 
Sbjct: 7   CPDPPAGAPEWMATFADLMSLMMCFFVLLLSFSEMDVIKYKQVAGSLKAA---------- 56

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                              +   I      L      Q+    + +  +      Q ++ 
Sbjct: 57  -----------------FGVQRDIPAQEDPLGTSIIMQEFSPAQPQPTVINEVRQQTTDE 99

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K  L       +D                                    QD A+ +   
Sbjct: 100 SKRFLEILDPAVEDA-----------------------------------QDKAEDLKQE 124

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L   +A+ +++     T    ++I I   R    F  +S+         L KI E L   
Sbjct: 125 LKKEIAEGLIE---INTIDDQVVIRI---REKGSFPSASARIDTPFKAALMKIAEALNQV 178

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              I I GHTD  P   +    NW LS  RA +    + +  G++ +R+  I     +R 
Sbjct: 179 EGRILIAGHTDDVPIETLEFPSNWVLSAARAAAVAHTMTQVGGIAPERVE-IRAHGDNRP 237

Query: 321 KIASDPMNSA--NRRIDILVE 339
              ++  +    NRR++I+V 
Sbjct: 238 VDTNETTDGRANNRRVEIIVL 258


>gi|146306332|ref|YP_001186797.1| flagellar motor protein MotB [Pseudomonas mendocina ymp]
 gi|145574533|gb|ABP84065.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 296

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 110/320 (34%), Gaps = 59/320 (18%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
            ++    + +W + +AD M++LM FF+++   +  D    K I              +K 
Sbjct: 4   PEEEARAMPAWVMTFADLMSLLMCFFVLLLSFSEIDAQRFKQIAGEL----------AKA 53

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
              ++  P            D+         ++    Q+   Q             Q + 
Sbjct: 54  FGVQREVPALEVPLGTSPVFDKFSPGKPEPTEVQEIRQQTTTQ-----------DPQLDT 102

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     + +   +      +  S+   +      LS+ ++  ++ ++R+          
Sbjct: 103 LRGDAEAELQARAEAQVDQQVRDSVAALQQLLQGELSEGRLQLLEERRRI---------- 152

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                                    I+       F   S+   P    +L  + E+L   
Sbjct: 153 -------------------------ILRVEERGSFASGSAELTPAFEDMLLGMSELLVEI 187

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              +++ GHTD  P      R NW LS  RA +    L+ +   E +  ++ GFA  R +
Sbjct: 188 PGTLTVEGHTDDVPISTARFRSNWDLSAARASAVANALLLNPALEPQRLEVKGFADTRPR 247

Query: 322 IASDPM--NSANRRIDILVE 339
           +A+D     + NRR++I+++
Sbjct: 248 VANDSAQQRALNRRVEIIID 267


>gi|295706900|ref|YP_003599975.1| putative flagellar motor channel protein [Bacillus megaterium DSM
           319]
 gi|294804559|gb|ADF41625.1| putative flagellar motor channel protein [Bacillus megaterium DSM
           319]
          Length = 203

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 9/187 (4%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220
            +    N++    +  L+    LA   K +       I + + G + +N ++ V+  +  
Sbjct: 20  SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDNILAKVQGYLKENKLQHVITAKRD 79

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+++ + +Q    +F+   +  L +    L ++G + +     I + GHTD  P    
Sbjct: 80  ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 136

Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               NW LS  RA    + L     +S +R   + G+   +  + +  +     NRR++I
Sbjct: 137 RYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNDNLQKNRRVEI 195

Query: 337 LVEDRQG 343
           ++ D + 
Sbjct: 196 IISDPEA 202



 Score = 42.6 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 23/41 (56%)

Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           + +AD +T+++ FF++++ +++ D+   + +       G 
Sbjct: 1  MVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNSLTSGGS 41


>gi|118581870|ref|YP_903120.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504580|gb|ABL01063.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 271

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              Q  +     +  S Q           S K   L  S        K E   +P     
Sbjct: 36  AMSQSDKKKTEEVMQSIQQSFGMVQAGAPSPKMNILPSSQMSITPSIKPEVSVMPGSRGA 95

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           + + +K +   +D  +  SS  + LV       V    TR G+++S+   +    FD   
Sbjct: 96  RGM-VKTRATEKDFRQIKSSIEAYLVKQGAQSKVNLTITRRGLIVSL---KEAGFFDSGQ 151

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM 300
           +   P    ++  I EV+   +  + + GHTD  P   +    NW LS  RA +  + L+
Sbjct: 152 AQIKPTAYELINTIAEVMTQYSNPLRLEGHTDNVPINTSQFPSNWELSTARAVNGLKYLI 211

Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           ++ GV  D+I  ++G+A  R    +      + NRR+D+++   +G
Sbjct: 212 RNFGVDPDKI-SVAGYAEFRPMADNATPEGRAKNRRVDLVMLSNEG 256


>gi|295399258|ref|ZP_06809240.1| OmpA/MotB domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110141|ref|YP_003988457.1| OmpA/MotB domain protein [Geobacillus sp. Y4.1MC1]
 gi|294978724|gb|EFG54320.1| OmpA/MotB domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215242|gb|ADP73846.1| OmpA/MotB domain protein [Geobacillus sp. Y4.1MC1]
          Length = 254

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 10/207 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            Q     N+         +     + E   ++ +         +K +  + K+ L ++ +
Sbjct: 47  AQIAQSFNAAFTGGTGVLEFQAPIEPEPLPSQPKQQNDQQNDNKKKIDKQEKEELHEVQE 106

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI + +   V + +   +    T  G+ I+I+   N  +FD  S+   P+   + ++I +
Sbjct: 107 KIDTYI---VNERLNGKLKTSLTEEGLAITIL---NDILFDSGSAEVRPQDRQLAKEISQ 160

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L  +    I I GHTD  P  N     NW LS+ RA +  ++L+++   + R+    G+
Sbjct: 161 MLVMNPPRNIIISGHTDNVPIHNAQFSSNWELSVMRAVNFMKLLLENPKLDPRLFSAKGY 220

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
              +   ++D       NRR++IL+  
Sbjct: 221 GEFKPVASNDTPEGRMKNRRVEILILP 247



 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK       +   SW I Y+D +T+L+A F+V++  +  D      I Q FN      
Sbjct: 1   MNKKKKQKHGEHINESWLIPYSDLLTLLLALFIVLFASSQIDQKKFAQIAQSFNA----A 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T   G+ + Q P E           ++   +N    KI    +++ ++  E    Y+ N
Sbjct: 57  FTGGTGVLEFQAPIEPEPLPSQPKQQNDQ--QNDNKKKIDKQEKEELHEVQEKIDTYIVN 114

Query: 137 SQQSEHCKNSLTRDS 151
            + +   K SLT + 
Sbjct: 115 ERLNGKLKTSLTEEG 129


>gi|146277438|ref|YP_001167597.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555679|gb|ABP70292.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 367

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 35/345 (10%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 25  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 84

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS- 137
           +   + +   PP        D   D   ++           +  +    +  +   S   
Sbjct: 85  SGNTVIELGMPPADPDGLHPDERSDMGGSEEPGGDAPERVAEALREALEQGELQVRSEDG 144

Query: 138 ---------------------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
                                             +                        P
Sbjct: 145 SVVIELPGKQAAQALAQALAEAAGVGTGPLPEPQTTAQPRPEPQAGPAGPGEGTGAPAGP 204

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P+  E+  A+++  R +    ++ + L   VA+ +VK    E     + +S+        
Sbjct: 205 PVGGEQGAALRKSVRAELDTLRLRNALDREVAEGLVK---VEQMDGKVFVSL---GAGGS 258

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S +   +   V+ +I E   H    I++ GHTD  P    A RDN  L+  RA S 
Sbjct: 259 FTSGSDVLSEDARAVMSRIAEATQHPERTITVTGHTDNVPVAGGAFRDNIALAAGRAASV 318

Query: 296 YQVLMK-SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+   GV   RI+ +S G        A++   + NRRI+I +
Sbjct: 319 VRELVATGGVDPGRITAVSRGEFDPVADNATEAGRTQNRRIEIEI 363


>gi|254491010|ref|ZP_05104191.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224463523|gb|EEF79791.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 263

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 115/324 (35%), Gaps = 68/324 (20%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K       +N+  +   +AD MT+LM FF+++  +   D    K + +            
Sbjct: 2   KSRSQKPVDNVPRYMGTFADLMTLLMCFFVLLVAMAEIDALKFKMVVRSM---------- 51

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                ++    +R   ++ ++ +   + K +                        S +  
Sbjct: 52  -----EDAFGVQRPEPDEPEIIMGTSVIKQT-----------------------FSTAAP 83

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            E   +++ + S+  KD  K  D                      A+    R+Q L   +
Sbjct: 84  KETPLSTVRQASDSDKDALKVED---------------------AAVYEAARMQTLMDDL 122

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +   S  + +++   +  E     I+I I ++ +   F    +      + VL  I E L
Sbjct: 123 TKKFSTAINNDL---LSLEQLPDRIMIRINEKTS---FTSGGAKLKTAFLPVLSLIAETL 176

Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A   +   + GH+D  P R+   R NW LS  RA S    L++         +I  +A  
Sbjct: 177 AELDDTFIVSGHSDNVPLRSGNYRSNWELSGARATSVVHALLRHPKLVPSQFRIEAYADT 236

Query: 319 RLKIASDPMNSA--NRRIDILVED 340
           +   ++D       NRR++I + +
Sbjct: 237 QPVESNDTAAGRATNRRVEIGIVN 260


>gi|224368748|ref|YP_002602909.1| MotB1 [Desulfobacterium autotrophicum HRM2]
 gi|223691464|gb|ACN14747.1| MotB1 [Desulfobacterium autotrophicum HRM2]
          Length = 269

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +F +S +QQ    +   +  S  G      T   + +         P   +KI  +    
Sbjct: 49  LFAMSTTQQETFKELVESLRSALGVQSVPETGTREGLTMHAVPSEEPTDNQKIDELGG-- 106

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   ++I+S +  ++  N + G++    + TG++I++ D     +F    +I   +  
Sbjct: 107 MVEKEIREIASEVREMILFNKLGGLVNVSESETGVVITMSDL---LLFSAGEAILSEKGA 163

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L K+  VLA     + ++GHTDASP        NW LS  RA +  ++L+ SG+    
Sbjct: 164 DILNKVTAVLAQLAYHVKVKGHTDASPISTGRYPSNWELSASRAAAVVKLLVASGLDPS- 222

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           +    G+A +R    +D     + NRR++I+
Sbjct: 223 LISAEGYAQYRPVATNDTEKGRARNRRVEIV 253



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 1/113 (0%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
             W   +AD +T+LM FF++++ ++ T  +T K + +              G  +     
Sbjct: 29  PEWMATFADLVTLLMCFFVLLFAMSTTQQETFKELVESLRSALGVQSVPETGTREGLTMH 88

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
              S+   D    + +    V+ +I     + +   L N +  L N  +SE  
Sbjct: 89  AVPSEEPTDNQKIDEL-GGMVEKEIREIASEVREMILFNKLGGLVNVSESETG 140


>gi|239827803|ref|YP_002950427.1| flagellar motor protein MotB [Geobacillus sp. WCH70]
 gi|239808096|gb|ACS25161.1| OmpA/MotB domain protein [Geobacillus sp. WCH70]
          Length = 251

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 86/210 (40%), Gaps = 10/210 (4%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           + ++ +    S       G  +       +              ++K    + K+ L  +
Sbjct: 42  DQKKFQQIARSFNTALAGGTGVLDFESPIEPETPPSPSKQEHKQQQKNSNKEDKEELHAV 101

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +KI + ++     ++   +    T  G+ I+I+   N  +FD  S+   P+   + ++I
Sbjct: 102 QEKIDTYIAE---KHLNGKLQTSLTDEGLAITIL---NDILFDSGSAEVRPKDRKLAKEI 155

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            ++L  +    I I GHTD  P  N     NW LS+ RA +  ++L+++   + R     
Sbjct: 156 SQLLVMNPPRNIIISGHTDNVPIHNAQFASNWELSVMRAINFMKILLENPELDPRWFSAK 215

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341
           G+   +    ++       NRR++IL+  +
Sbjct: 216 GYGEFKPVAPNNTPEGRMKNRRVEILILPK 245



 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 28  NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
           +   SW I Y+D +T+L+A F+V++  +  D    + I + FN      +    G+ D +
Sbjct: 12  HINESWLIPYSDLLTLLLALFIVLFASSQIDQKKFQQIARSFN----TALAGGTGVLDFE 67

Query: 88  NPPERSSQNKIDLSIDEHITKNSV 111
           +P E  +         +   KNS 
Sbjct: 68  SPIEPETPPSPSKQEHKQQQKNSN 91


>gi|323945384|gb|EGB41438.1| OmpA family protein [Escherichia coli H120]
          Length = 148

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 55/97 (56%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               +L ++  V       I I GHTDA  ++N   +NW LS DRA SA +VL ++G+ E
Sbjct: 18  FFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPE 77

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           D++ ++S  A   L  A +P ++ NRRI+I+V  +  
Sbjct: 78  DKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 114


>gi|83647833|ref|YP_436268.1| flagellar motor protein MotD [Hahella chejuensis KCTC 2396]
 gi|83635876|gb|ABC31843.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 260

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 109/325 (33%), Gaps = 80/325 (24%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++K+    +  +N   W + YAD       F  +++             E  +    + L
Sbjct: 1   MRKRRRNREESHNHERWLVSYAD-------FITLLFAFFVVMYSVSSVNEGKYKVLSETL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +G+F+                                       QR  N I     
Sbjct: 54  ----EGVFNAT-------------------------------------QRSVNPIQVGQQ 72

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +           +     +D    T  E++                       +RL+++A
Sbjct: 73  TAAPPQSDAPAIQPFNSPEDPAGETSEEQAG----------------------ERLREIA 110

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            + +  L GL+   +   V        I +S+   RN  +F+   ++P+     ++  I 
Sbjct: 111 NRFNYRLKGLIGQGM---VSINENDNWIELSL---RNNLLFNSGDAVPVDAAFNLIDGIA 164

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L      I + G TD  P R+ A   NW LS  R+ +  ++L+  GV   R++ + G+
Sbjct: 165 GILKDYPNAILVEGFTDNVPIRSSAYPSNWELSSARSAAVARLLIIGGVDPRRLAAV-GY 223

Query: 316 AHHRLKIASDP--MNSANRRIDILV 338
             ++    +D       NRR+ +LV
Sbjct: 224 GEYQPVARNDTSEGRQRNRRVVLLV 248


>gi|121533429|ref|ZP_01665257.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307988|gb|EAX48902.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 262

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L +L K++   ++     N+   +    T  G++I I D     +F    +   PE++ 
Sbjct: 107 QLIELKKQLDRYIAE---SNLAGDIQTALTDDGLMIRIKDT---ALFASGRAELKPESLR 160

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA-YSAYQVLMKSGVSEDR 308
           +  +I  ++A  ++ + + GHTD  P        NW LS  RA      +L ++ +  +R
Sbjct: 161 LGTEIARMIAPLSQRVIVAGHTDNMPINTPEFPSNWDLSTKRALNFMKYMLSQAEIKPER 220

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           I  +SG+  +R   ++D     + NRR+++L+  
Sbjct: 221 I-SVSGYGEYRPVASNDTEEGRAKNRRVEVLIMR 253


>gi|255527289|ref|ZP_05394169.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7]
 gi|255509027|gb|EET85387.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7]
          Length = 182

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            + +   V  E    G+++S+ D      F+   +  +  +   L +IG++L      + 
Sbjct: 7   KNGMQNSVTTEVDERGLVVSLRDT---LFFETGKAEVIAASQGKLVEIGKILNQLDNTMR 63

Query: 268 IRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324
           I GHTD  P  N     NW+LS  RA +  ++L+ +GV   ++S ++ +  +R     ++
Sbjct: 64  IEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YGEYRPVLDNST 122

Query: 325 DPMNSANRRIDILVEDRQ 342
           +   + NRR+DI+V   +
Sbjct: 123 EDGRARNRRVDIIVVSNK 140


>gi|302873043|ref|YP_003841676.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307688801|ref|ZP_07631247.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302575900|gb|ADL49912.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 256

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 11/199 (5%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T  S     L     L+ +   +        S E        ++L  + +++   ++   
Sbjct: 56  TSPSGGAGVLDGGQGLDMATLSQAVKDAASKSAELDYEKLEAEKLTKVKEQVDKLIAE-- 113

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
              +           G++I++ D      FD   +    +    L  + ++L+     + 
Sbjct: 114 -SELNGSATTAIEERGLVITVKDN---LFFDSGKATVKEQYKRQLNALSKILSSIDNYVR 169

Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IA 323
           + GHTD  P +      NW+LS  RA +  ++     G++ +R+  + G+  +R     A
Sbjct: 170 VEGHTDNVPIKTPYFNSNWQLSSIRASNVVEIFATECGLNPNRLLPV-GYGEYRPIATNA 228

Query: 324 SDPMNSANRRIDILVEDRQ 342
           ++   +ANRR+DI++ + +
Sbjct: 229 TEEGRAANRRVDIVILNSK 247


>gi|149201621|ref|ZP_01878595.1| flagellar MotB protein [Roseovarius sp. TM1035]
 gi|149144669|gb|EDM32698.1| flagellar MotB protein [Roseovarius sp. TM1035]
          Length = 383

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 115/362 (31%), Gaps = 46/362 (12%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-----GKNLM 77
               P    +W   +AD  T+LMAFF+++      +    K +    +          +M
Sbjct: 20  PKCPPKGAPAWMATFADIATLLMAFFVLILSFAEFNQPKFKMVAGSLSMAFGVQRQVPVM 79

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              KG          S +  +   + +  T+           ++      E         
Sbjct: 80  EQPKGTTILDLSFSPSPEMSVTEQMTQDTTETEQPEIQRPVTEEDGKGAAEGEGADAPGQ 139

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLE-------------------KSINKEENYFLPPL 178
            ++     +L    + G+   +S + E                    +   ++       
Sbjct: 140 SEAREMAEALQEALQSGQVKVESREGEVVMTFDAPDAQSLPGQLTEAAEALQQAAEATGQ 199

Query: 179 SKEKILAMKRKKRLQDLAKKI-----------SSTLSGLVADNIVKGVLFETTRTGIL-I 226
           S   ++       +Q++A+ +            S  S  +AD  ++  L +    G++ +
Sbjct: 200 STSDVMMQGLADNIQEMAEVMQGKAEAETQAGQSARSAAIADAQLQVALQQEIGEGLVSV 259

Query: 227 SIIDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--R 278
              + +          F    +    E   V+ ++          I + GHTD+ P    
Sbjct: 260 EQREDKVVITVGEGGAFPSGGADLTDEARDVMARLAFAAMGEASEIVVTGHTDSVPLGGA 319

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +  RDNW L+  RA S  + L  SG+ E      +          +D     + NRRI+I
Sbjct: 320 SPYRDNWGLAAARASSVVRELSGSGLIEPERLTATSRGESLPVAENDTAAGRAQNRRIEI 379

Query: 337 LV 338
            +
Sbjct: 380 EI 381


>gi|1170998|sp|P46827|YTXE_BACME RecName: Full=Uncharacterized 24.6 kDa protein in ccpA 3'region;
           AltName: Full=ORF2
 gi|415666|gb|AAA22297.1| homologue to motB; ORF2; putative [Bacillus megaterium]
          Length = 218

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220
            +    N++    +  L+    LA   K +       I + + G + +N ++ V+  +  
Sbjct: 35  SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDNILAKVQGYLKENKLQHVITAKRD 94

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+++ + +Q    +F+   +  L +    L ++G + +     I + GHTD  P    
Sbjct: 95  ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 151

Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           A   NW LS  RA    + L     +S +R   + G+   +  + +  +     NRR++I
Sbjct: 152 AYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNDNLQKNRRVEI 210

Query: 337 LVEDRQG 343
           ++ D + 
Sbjct: 211 IISDPEA 217



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          +K++            W + +AD +T+++ FF++++ +++ D+   + +       G 
Sbjct: 1  MKRRRKRYSA--QSPKWMVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNSLTSGGS 56


>gi|311031291|ref|ZP_07709381.1| flagellar motor protein MotS [Bacillus sp. m3-13]
          Length = 254

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
               + SIN E       +++ +    + +  LQ+L  ++ + L+    +++   V+   
Sbjct: 69  EHPTDFSINTESTNNQEDVAENEEQTQENEDSLQELLVEVQTFLAE---NDLEDVVVANR 125

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  GI++ +       +++ + +  LP     L K+G +L     ++ + GHTD  P   
Sbjct: 126 TERGIVLVL---EEKVLYETAEARILPIAHPFLDKVGTLLTKIPNLVKVEGHTDNRPIST 182

Query: 280 I-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
                NW LS  RA S  + L+ +  +  +R   + G+   R  + +  +     NRR++
Sbjct: 183 EKFPSNWELSAARASSVIRYLVDAHDLDPERFIAV-GYGDTRPIVENTSNANYQKNRRVE 241

Query: 336 ILVEDRQ 342
           I++ D Q
Sbjct: 242 IVISDPQ 248



 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++       +    W + ++D   +++ FF++++ ++  D    KA+ + F       
Sbjct: 1   MKRRKKKMSVESGAPKWMVTFSDLFMLVLVFFILLFSMSQIDLVKFKAVAESFKQV---- 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 I D  NP     ++  D SI+   T N  D+       ++    L+  +  +  
Sbjct: 57  -----NILDY-NPSAVPFEHPTDFSINTESTNNQEDVAENEEQTQENEDSLQELLVEVQT 110


>gi|121533592|ref|ZP_01665419.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307583|gb|EAX48498.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1]
          Length = 257

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++I S +   V D   +GV F  +  G+ I  +D     +FD   +   P+ + +L  + 
Sbjct: 98  REIISQIQQRVKDP--QGVGFTVSERGLTIRFLDS---ILFDLGRAELRPDALPLLDAVA 152

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314
           + L  +   I + GH D  P        NW LS  R+ +  +  +   G+   R+S + G
Sbjct: 153 DALKQTDNYIRVEGHADNLPINTAQFPSNWELSAARSIAVTRYFIDKHGLEPRRLSSL-G 211

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340
           +  +R    +  +   + NRR+DI++  
Sbjct: 212 YGEYRPLYPNTSEANRAKNRRVDIVILR 239



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 1/102 (0%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
                +  W + YAD +T+LM FF+VM+ +++ D     A++       +     +  IF
Sbjct: 14  HDATGMMRWLLTYADLITLLMVFFVVMYAMSSADQKKFNALKASLAAALRTEGAGTNLIF 73

Query: 85  D-EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           +   N P     N      D    +  +          +   
Sbjct: 74  EYSGNRPFNQVVNPEGTEKDLETFREIISQIQQRVKDPQGVG 115


>gi|89056663|ref|YP_512114.1| chemotaxis protein MotB [Jannaschia sp. CCS1]
 gi|88866212|gb|ABD57089.1| chemotaxis protein MotB [Jannaschia sp. CCS1]
          Length = 277

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 2/187 (1%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GV 215
           L +      S+   E      L   +  A + +  L ++   +       V  ++ +  +
Sbjct: 91  LSQDGSGATSLRPTEGRQALGLEGTEHDAEQEEANLTEIEGALMGEGGDSVLSDLARPHI 150

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
               T  G++I +  +   P+FD  + +P P    +   + ++       +++  H  A 
Sbjct: 151 ETRLTDEGLVIEVFSRPGQPIFDPDTGLPQPWLEELTVSMADLFGTVLNRVAVEAHIAAE 210

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           P        W+ + +RA     +L   G++  RI++++G +     + S P+   N RI+
Sbjct: 211 PLVRTTESGWQRTTERAQIIRALLEDGGLNAQRIARVTGHSDREPFV-SPPIAPRNDRIE 269

Query: 336 ILVEDRQ 342
           +++   +
Sbjct: 270 VILLRER 276


>gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD [Herminiimonas arsenicoxydans]
 gi|133738444|emb|CAL61489.1| putative flagellar motor protein MotD [Herminiimonas
           arsenicoxydans]
          Length = 261

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKK 198
           S     + +  + K   L        SI         P  +    A KR+K R+ ++A+ 
Sbjct: 49  SNSLGIAFSGITPKAPALKDPAPSSPSILPLPMPAHSPSQRANDAATKREKARMTNIARD 108

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   ++ L+ +     V    T  G+ + I     + +F    +    ++   L+ + EV
Sbjct: 109 ILKAMAPLIREG---KVRVTQTNRGVSVEI---NASVLFAPGEARLSAQSEKALRAVAEV 162

Query: 259 LAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L      I + GHTD  P  N     NW LS  RA S  ++ ++SG++E R+  + G   
Sbjct: 163 LNKVDNDIQVEGHTDNVPINNAMFPSNWELSAVRASSVVRLFLESGMNEKRLVAM-GHGA 221

Query: 318 HRLKIASDPM--NSANRRIDILVED 340
           ++   +++       NRR+ +++  
Sbjct: 222 NQPVDSNETTEGRLRNRRVQLMILS 246


>gi|332702472|ref|ZP_08422560.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552621|gb|EGJ49665.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 239

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLA--KKISSTLSGLVADNIVKGVLFETTR 221
           ++     +    P  +++  L     + L   A  + I S L         + V F+   
Sbjct: 53  DEIAGSMQTALKPSEARKSDLREAVTRELDRQATLEHIISDLQQRFRGEAAEHVQFQLRP 112

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNI 280
             + I++        FD  S+   P+ + +L+KIG VL      +++ GHTD  P     
Sbjct: 113 GAVAINLH---GPAFFDSGSAELTPDAVRMLRKIGVVLVGVPYHLTVEGHTDNVPIQTGA 169

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNS-ANR 332
              NW LS  RA    + L+  GV  D + KI G A  R  + ++       P N   NR
Sbjct: 170 FDSNWELSALRATRVARFLISQGVRPDNM-KIVGLADTRPLLPNNDASGAALPENQTRNR 228

Query: 333 RIDILV 338
           R+ ILV
Sbjct: 229 RVVILV 234



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 20/61 (32%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
          K             W +  AD MT+L+ FF+++  I+  D      I        K    
Sbjct: 9  KLRRRRMDQEGGEDWHLSLADMMTLLLCFFVLLASISQVDYTLFDEIAGSMQTALKPSEA 68

Query: 79 A 79
           
Sbjct: 69 R 69


>gi|309388829|gb|ADO76709.1| OmpA/MotB domain protein [Halanaerobium praevalens DSM 2228]
          Length = 282

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 9/242 (3%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
           + +N  +   G +                          +  + D EK +    +   + 
Sbjct: 1   MPRNKKNKSDGDSGGGSPAWMTTFGDMMTLLLVFFVLLFSFSSMDVEKFQGFISALQNQL 60

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGI 224
            + +         + +     +   +  +  +++   +   +  +N+   V  E  R G+
Sbjct: 61  GVLQGGKTITEDPNIDAGNLGQDYAQAPENIQQVMKQIDNYIENNNLSDKVNVENKRKGL 120

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RD 283
           +IS+       +++   +    +   VL KI E+L      I I GHTD  P R      
Sbjct: 121 VISLT---GEILYELGKADIREQGKEVLTKISEILKEIPNDIMIEGHTDDLPIRTAEFPS 177

Query: 284 NWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           NW LS  RA +  + L++       R+S  +G++ +R    ++     + NRR++++V +
Sbjct: 178 NWELSTARAVNVIKYLIEEKDFDPARLSA-AGYSEYRPVATNNSTEGRAENRRVEVVVLN 236

Query: 341 RQ 342
            Q
Sbjct: 237 SQ 238


>gi|15893597|ref|NP_346946.1| chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum ATCC 824]
 gi|15023148|gb|AAK78286.1|AE007545_3 Chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum ATCC 824]
 gi|325507717|gb|ADZ19353.1| Chemotaxis motility protein B, gene motB [Clostridium
           acetobutylicum EA 2018]
          Length = 256

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 11/197 (5%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           +   GK +  + D     +           +        + +L+D+ KKI   ++    +
Sbjct: 56  NGASGKTVIGNQDAVDIKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQ---N 112

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            +   V       G+++SI+D     MFD   +   P+    L +IGE+L      I I 
Sbjct: 113 GMQGSVSTNLQEKGLVVSIVDT---LMFDTGRAEVKPDFQKKLVEIGEILKTIDNYIRIE 169

Query: 270 GHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD +P  N     N  L   R+ +   + +  S +   ++  +S +A  R    ++  
Sbjct: 170 GHTDNTPISNSQYASNIELGSARSNNVEHLFIDVSKIPVTQMYTVS-YADTRPVADNNSE 228

Query: 328 N--SANRRIDILVEDRQ 342
              + NRR+DI++ + +
Sbjct: 229 AGKARNRRVDIVILNSK 245



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 1/117 (0%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    + P N   W + Y+D +T+LMAFF+VM+  +    +    I Q     G N  + 
Sbjct: 2   KRKKHEEPENSERWLLTYSDLITLLMAFFIVMYASSTVSKEKFAQIAQSLK-VGFNGASG 60

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
              I ++     +S+ + +     +         +    + KK+  +  N      +
Sbjct: 61  KTVIGNQDAVDIKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQNGMQGS 117


>gi|297538888|ref|YP_003674657.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297258235|gb|ADI30080.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 272

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + ++ +  +   +S+ LS L+ D     V       GI I I D     +F   S+    
Sbjct: 104 REREAMTKMGIDLSNKLSPLINDG---KVRVMQNNRGIRIDINDS---LLFTPGSAELAA 157

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305
               VL +I  ++  +  +I + GHTD     N +   NW LS  RA S  ++L  +GV+
Sbjct: 158 AASTVLSEIAPMIKDNDRLIQVEGHTDNIAIHNDLFYSNWELSAVRASSVVRMLSDTGVA 217

Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           E R+S + GF   +    ++     + NRR+ I++ 
Sbjct: 218 ESRLSAL-GFGSTQPITENNTELGRAKNRRVSIMIL 252


>gi|332799185|ref|YP_004460684.1| OmpA/MotB domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696920|gb|AEE91377.1| OmpA/MotB domain protein [Tepidanaerobacter sp. Re1]
          Length = 226

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 9/180 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           +E  +   E  F+        L    ++R  +L   +   +  ++ ++ + GV       
Sbjct: 43  IEGGMTLSEGDFIEAGDAGSFLISAEEQREFEL---LEEKIQKIIDEDNIGGVQVNLDER 99

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIA 281
           G+++  ++     +FD   +    +   +L K+  +L  S   I I GHTD  P   +  
Sbjct: 100 GLVVRFVE---GVLFDSGKADIRNDAKEILDKLAPLLIESHRQIRIEGHTDNLPIHTSEF 156

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             NW LS  RA +  + +++       I   +G++ +R    +D     + NRR+DI++ 
Sbjct: 157 PSNWELSTARAVNVVKYMIERHNLSPYIISAAGYSEYRPIAPNDSEKNRALNRRVDIIIL 216


>gi|23099999|ref|NP_693465.1| motility protein B [Oceanobacillus iheyensis HTE831]
 gi|22778230|dbj|BAC14500.1| motility protein B (flagellar motor rotation) [Oceanobacillus
           iheyensis HTE831]
          Length = 257

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 103/328 (31%), Gaps = 83/328 (25%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++       +   SW + YAD +T+L+A F+V++ ++  +    + +   F       
Sbjct: 1   MSRRGKKKSQSHMDESWLLPYADLLTLLVALFIVLFAMSDINIQKYEQLASVFR---SEF 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G+ D Q  P                                              
Sbjct: 58  SNAGSGVLDHQEIPVPP------------------------------------------- 74

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
               E  +     DSE+  +    ++ E    +     +    +E  L  +    L D  
Sbjct: 75  ---PEQEEVDENEDSEEQDEQLSKSESELRDLQALQTQINHFIQEHELTEQLGTELTD-- 129

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
                                     G++I+++   N   FD  S+     +  +   + 
Sbjct: 130 -------------------------EGLMITLV---NEVFFDSGSAEVKETSKEIANDVS 161

Query: 257 EVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +L       + I GH D  P        NW LS+ RA +   +++++   +  +    G
Sbjct: 162 NLLYTEPPHQVVISGHADDVPIETEEYNSNWELSVSRAINFMTLILENEELDPTLFSAKG 221

Query: 315 FAHHRLKIASD--PMNSANRRIDILVED 340
           +   +  + +      + NRR+++L+  
Sbjct: 222 YGEFQPIVPNTSAENRAKNRRVEVLILP 249


>gi|119470009|ref|ZP_01612814.1| putative chemotaxis protein [Alteromonadales bacterium TW-7]
 gi|119446719|gb|EAW27992.1| putative chemotaxis protein [Alteromonadales bacterium TW-7]
          Length = 319

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++         +   W + YAD+MT++ AFF+VM+ I    ++  + +            
Sbjct: 4   RRFGRSAHKNQHTERWLVSYADYMTIMFAFFVVMYAIAINKEENFQILSDSLEQ------ 57

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                +FD+           +D +                             I     +
Sbjct: 58  -----VFDKSARVYSQQGTGVDGTG----------------------------ILTDRVT 84

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            + E          E+G +L        +I ++                   K L  L  
Sbjct: 85  PEDELLYGESINKEEQGPELLDGQSETSNIQQKY----------------LGKPLDSLLT 128

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+ S L   + D        E  +  ++I +    +  +F   S++       V++ + +
Sbjct: 129 KLQSALIDEIRDGEAN---LELNQDWLIIELS---SGMLFSSGSAVAHSRAKQVVKIVKD 182

Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++A     I +RG+TD    +N I R NW LS+ RA S    L   G++  R+  I G+ 
Sbjct: 183 IIAPVDNYIRVRGYTDDETIKNEIFRSNWELSVARATSILVELEALGINSARM-AIEGYG 241

Query: 317 HHRLKIASDP--MNSANRRIDILV 338
            +     +D     + NR++ I +
Sbjct: 242 QYSPFAPNDTDEGRAENRKVVIAL 265


>gi|212638649|ref|YP_002315169.1| flagellar motor protein MotB [Anoxybacillus flavithermus WK1]
 gi|212560129|gb|ACJ33184.1| Flagellar motor protein B [Anoxybacillus flavithermus WK1]
          Length = 251

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L     +E +  +     +K      K+  ++L K  S     +  + +   +    T  
Sbjct: 68  LSPVEREEVDSVIKDSPNQKPYVKISKEEYEELKKIQSKFNEYVKTNQLSGELSVAMTEE 127

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G+L++I    N  +FD  S+   P+   V +KI  +L  +    I I GHTD  P  N  
Sbjct: 128 GLLVTI---ANDVLFDSGSADIKPQYRNVAKKISNLLVMNPPRNIVISGHTDNVPINNAK 184

Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              NW LS+ RA +  ++L+++   + ++    G+   +   ++      + NRR++IL+
Sbjct: 185 FASNWELSVMRAVNFMKLLLENTKLDPQLFSAKGYGEFKPIASNATPEGRAKNRRVEILI 244

Query: 339 EDRQ 342
             ++
Sbjct: 245 MPQE 248



 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
          SW I YAD +T+L+A F+V++  +  D      I + FN    ++ T   G     +P E
Sbjct: 17 SWLIPYADLLTLLLALFIVLFASSQIDSKKFLEIARAFN----SVFTGGTGALQYLSPVE 72

Query: 92 RSSQNKI 98
          R   + +
Sbjct: 73 REEVDSV 79


>gi|148266090|ref|YP_001232796.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399590|gb|ABQ28223.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 258

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 11/178 (6%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +++          K  +   +K  + +   I + L    A N    V  E TR G+++S+
Sbjct: 82  RQQTLPPKQAQYGKTRSHAEEKDFKAIKAAIEAYLLKNDAQN---KVSVEITRRGLVVSL 138

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRL 287
              +    FD  S+     +  +L  + E +++ T  I + GHTD  P  +     NW L
Sbjct: 139 ---KEVGFFDSGSATVQQNSYGLLAHVAESVSNYTNPIRVEGHTDNVPISSHTFPSNWEL 195

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S  RA +  Q L++      D+IS  +GF  HR    +        NRR+DI++   +
Sbjct: 196 STARATNLVQYLIRYYEFQPDKISA-TGFGEHRPIADNSTAEGRGKNRRVDIVLLSTE 252


>gi|221635437|ref|YP_002523313.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium
           roseum DSM 5159]
 gi|221157647|gb|ACM06765.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium
           roseum DSM 5159]
          Length = 237

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           +G   E T  GI+I + D     +F    +   PE   VL  I  ++      I + GHT
Sbjct: 104 QGAEVELTSEGIVIHLSD---AILFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVEGHT 160

Query: 273 DAS-PFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MN 328
           D++ P      DNW LS  RA +  + L   +G+   R+S  +G+   R + +++     
Sbjct: 161 DSTPPPPGSYPDNWELSAMRAVNTVRYLTDVAGLPPQRLSA-AGYGEFRPRASNETVEGR 219

Query: 329 SANRRIDILV 338
             NRR+DI++
Sbjct: 220 RKNRRVDIVI 229



 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 5/167 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-----F 72
           +++   +    NL  W I YAD +T+L+ FF+VM+ I+  D    + +            
Sbjct: 3   RRQRHHEGEHENLERWLITYADLITLLLIFFVVMYSISQADLAKFRQVASSLRAAFNLDV 62

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                     +   +  P  ++   +   +    T+  +D +        +   +  +  
Sbjct: 63  LTAPPPGQSMVTPLEQDPRFNAYLSVRAQVASLFTRLGLDRQGAEVELTSEGIVIHLSDA 122

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            L    Q+E    +          +    +  +     ++   PP S
Sbjct: 123 ILFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVEGHTDSTPPPPGS 169


>gi|332533102|ref|ZP_08408971.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037384|gb|EGI73838.1| flagellar motor rotation protein MotB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 319

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++         +   W + YAD+MT++ AFF+V++ I    ++  + +            
Sbjct: 4   RRLRHSAAKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEEQFQILSDSL-------- 55

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                                         +   D      +Q+ +       +      
Sbjct: 56  ------------------------------EQVFDKSARQYSQQGEGVNGNGILTDRVTP 85

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S+ ++ +  + L   +D                    I      K L  L  
Sbjct: 86  EQEVLYGESILKEEQGPELLDGQSDTS-----------------NIQQKYLGKPLDSLLI 128

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+ S L   + D        E  +  ++I +    +  +F   SS+       V++ + +
Sbjct: 129 KLQSALIDEIRDGEAS---LELNQDWLIIELS---SGMLFSSGSSVAHSRAKQVVKIVKD 182

Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++A     + +RG+TD    RN I R NW LS+ RA S    L   G++  R+  I G+ 
Sbjct: 183 IIAPVDNYVRVRGYTDDESIRNEIFRSNWELSVARATSILVELEALGINSARM-AIEGYG 241

Query: 317 HHRLKIASDPM--NSANRRIDILV 338
            +    ++D     + NR++ I +
Sbjct: 242 QYSPFASNDTEQGRAENRKVVIAL 265


>gi|77359764|ref|YP_339339.1| chemotaxis protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874675|emb|CAI85896.1| putative chemotaxis protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 319

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 110/324 (33%), Gaps = 65/324 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++         +   W + YAD+MT++ AFF+V++ I    ++  + +            
Sbjct: 4   RRLRNTTTKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEEKFQVLSDSIGYV----- 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                                             D      +Q+      +  +      
Sbjct: 59  ---------------------------------FDKSARQHSQQGTGVNGDAILTDRVTP 85

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S+ ++    K L   +D                    I      K L  L  
Sbjct: 86  EQEVLYGESILKEEHGPKLLDGQSDTS-----------------NIEQKLLGKPLDSLLA 128

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+ S+L   + D        E ++  ++I +    +  +F   SS+       V++ I +
Sbjct: 129 KLQSSLIDEIRDGEAS---LELSQDWLIIELS---SGMLFSSGSSVAQVRAKQVVKIIKD 182

Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++A     I +RG+TD     N + R NW LS+ RA +    L   G++  R+  I G+ 
Sbjct: 183 IIAPVDNYIRVRGYTDNQTIGNEMYRSNWELSVARATAVLVELESLGINSARM-AIEGYG 241

Query: 317 HHRLKIASDP--MNSANRRIDILV 338
            +     +D     + NR++ I +
Sbjct: 242 QYSPFATNDTKQGRAENRKVVIAL 265


>gi|91216090|ref|ZP_01253058.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
 gi|91185607|gb|EAS71982.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
          Length = 319

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 121/309 (39%), Gaps = 17/309 (5%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           L+  F V+ ++          +E  F    + + T      D+ N  + + ++++  S D
Sbjct: 7   LLIGFTVLNLVGCVSQKKFLELEDEFGTL-QRVNTQLNRKLDDCNSEKTALEDELSYSKD 65

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                 +    +    Q  +    + N  Y +  Q S      L  +S++ ++L +  +L
Sbjct: 66  RIEVLKTQRDDLTKDLQTTKSTLEKLNDSYDALEQNSSQA---LAANSKQNRELLEQLEL 122

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           ++    EE   L  L K+      + + LQ L       +  L     +   L      G
Sbjct: 123 KEGALAEEQNRLEQLQKDLQARSNQIEELQSLIADKEQKMISL--KENLSRALTNFEGQG 180

Query: 224 ILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276
           + + + D        N  +F   S     E    ++++G+VLA + ++ + I GHTD  P
Sbjct: 181 LSVELRDGKVYVSMENKLLFASGSWTVGGEGQKAVKELGKVLADNPDIAVLIEGHTDNVP 240

Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
           +       DNW LS  RA    ++L+K+G    +    +G       + +      + NR
Sbjct: 241 YGGNGPLTDNWDLSTKRATEVLKLLLKNGKINPQNLTAAGKGEFAPLVPNTTEEGKAKNR 300

Query: 333 RIDILVEDR 341
           RI++++  +
Sbjct: 301 RIEVVLTPK 309


>gi|320354494|ref|YP_004195833.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122996|gb|ADW18542.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 365

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 32/341 (9%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
            D  Q +    +I+       TP     W I ++D M  +   FL ++    T ++    
Sbjct: 34  HDWQQSSQPVFVIEDSFYRSRTPPRPVHWSIAWSDLMMTMFILFLTLFAHLRTHEEIL-- 91

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL--SIDEHITKNSVDLKIGSTNQKK 122
                             + DE  P +        +   I + ++    D        ++
Sbjct: 92  -----------AHGKPNKVADETMPVQTDQTPSALVFHPISQDVSLTIADDAKDIIPPQR 140

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
           + +  +  I +    ++ +    SL    +  +         ++         P    E+
Sbjct: 141 EQEGADVLIRHTLTEEKPQ--PESLAPIPQLPQQPSAPQSANQTAASPAQPLPPAPVPEE 198

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSS 241
               +   ++ DL+K        L  + + +    E      + I +       +F    
Sbjct: 199 KKQEELITKIYDLSKV------ALEKEQLDRFASVELVPDKTMRIILT---GDLLFASGQ 249

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300
           +    E +V L+KI  ++  +  +I++ GHTD  P +N     NW LSL RA    + L+
Sbjct: 250 AELTREALVSLKKISALIKTTPYMINVIGHTDDRPVKNARFPSNWELSLARAGRVARFLI 309

Query: 301 KS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           +  G+   +   +SG++  R    +   ++   NRR+++++
Sbjct: 310 EDTGLPATQF-SVSGYSSFRPLKPNTSEDNRKINRRVELVL 349


>gi|116330986|ref|YP_800704.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124675|gb|ABJ75946.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 340

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS-INKEENYFLPPLSKE 181
           +    +   F        +  +   T   +K + L K  + + + +          +S+ 
Sbjct: 120 EESERQGKKFRDLLDNLKDELEQEKTACQKKAEALQKEYEKKVAYLEAIILALNDEISRL 179

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           K L+  +KK L  LA + +   + L  +     +  +     ++I+I D      FD  S
Sbjct: 180 KNLSENQKKELDRLADQANELENKLGDEIKKGQIRLKRFHNRLVINIDD---RISFDSGS 236

Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299
           +    + +  L KI E+L +    +I I GHTD  P R     DNW+LS +RA S     
Sbjct: 237 AELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSVLHYF 296

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           ++S + + R   ++G+   +  +++D     + NRR+DI+V  R
Sbjct: 297 LESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVVVPR 340


>gi|150019084|ref|YP_001311338.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905549|gb|ABR36382.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 251

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 12/211 (5%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++S+   NSL      G         + S N   +      S     +   +++L D+
Sbjct: 40  DTKKSKTLANSLKIGFNSGNGEKVIAVADNS-NSVPDVIESTNSDADEDSNAEREKLSDV 98

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            KK+   ++      +   V+      G++IS  D      F+   +   P+    L  I
Sbjct: 99  KKKVDELVNN---SELKGSVITSIQERGLIISFNDS---VFFNSGQAAIKPDWQNKLISI 152

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKIS 313
            ++L      I + GHTD           NW+LS  RA +  + L+  G V  +R+S + 
Sbjct: 153 SKILNGIDNYIRVEGHTDNVVINTDYFHSNWQLSAVRASNVVEFLIYQGNVKPERLSSV- 211

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+  +R      ++   +ANRR+DI++ D +
Sbjct: 212 GYGEYRPVKSNTTEEGKAANRRVDIVILDTK 242



 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KK++  +        W + Y DF+T++M FFL+M+ I+  D    K +       G N 
Sbjct: 1   MKKRMKREKDDT--ERWMLSYLDFITLMMIFFLMMYAISNIDTKKSKTLANSLK-IGFNS 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               K I    N         +  S +    ++S   +   ++ KK+   L NN     +
Sbjct: 58  GNGEKVIAVADNSNSVPD---VIESTNSDADEDSNAEREKLSDVKKKVDELVNNSELKGS 114


>gi|296878139|ref|ZP_06902154.1| chemotaxis protein MotB [Clostridium difficile NAP07]
 gi|296430892|gb|EFH16724.1| chemotaxis protein MotB [Clostridium difficile NAP07]
          Length = 248

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KK+   +   + +N +   V       G++IS+ D     +FD   ++    +   + +I
Sbjct: 91  KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSREKIIQI 147

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      I + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 148 GKMLNEMNSYIRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 17  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72

Query: 93  SSQNKIDLSID 103
                    +D
Sbjct: 73  PVVEPGSNDLD 83


>gi|45600818|gb|AAS70302.1| motility protein B [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 266

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 11/271 (4%)

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L++  K    + N         ++  I    TK+S   K      +KQ ++  + I  L
Sbjct: 3   ELLSREKEFRAKDNDLNIEKIKVLENQIAVLKTKSSNKEKELIDENEKQSKKFRDLIDGL 62

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
               + E        ++ + +   K +DLE  I          +SK K L+  +KK L  
Sbjct: 63  KEDLERERENCQKKTEALQKEYERKISDLESRI----LVLNDEISKLKHLSENQKKELDR 118

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L+ + +   + L  +     +  +     ++I+I D+ +   FD  S+    + +  L K
Sbjct: 119 LSDQANELENKLTDEIKKGQIRLKRFHDRLVINIDDKIS---FDSGSADLKKQILPALDK 175

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I E+L +    +I I GHTD  P R     DNW+LS +RA S     ++S + + R   +
Sbjct: 176 IKEILGNYPGNLIIIEGHTDNVPIRTKKFSDNWQLSGERALSVLHYFLESKILDPRNFSL 235

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +G+   +  +++D     + NRR+DI+V  R
Sbjct: 236 AGYGEFQPIVSNDTPENRALNRRVDIVVVPR 266


>gi|284041524|ref|YP_003391864.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
 gi|283945745|gb|ADB48489.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
          Length = 290

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 71/312 (22%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+A F+V++ I++ +    + ++                          
Sbjct: 25  WLITYADMLTLLLALFIVLYSISSLNTSKFEEMKTSLR---------------------- 62

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                 D    + I+     ++ G +  +     +  NI        +     +    + 
Sbjct: 63  ------DAFSGKIISGGEGIIETGVSATRDTPTSIVPNITPPRVQIANPRDSTAAAALAA 116

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           + +D                                    + +  +I +         + 
Sbjct: 117 RIED---------------------------------NEFRRIKAQIDAYART---HGLR 140

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271
             V     R G+++ ++   +  +FD   +    E + +L  +G +L       I + GH
Sbjct: 141 DQVEAVVARRGLVVRLL--TDQVLFDSGFADLKSEGMPLLTHVGNLLVIDRIHPILVEGH 198

Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           TD  P   +    NW LS  RA    + L+  GV   R    SG+A         +D   
Sbjct: 199 TDDVPISTSRFESNWELSTARATEVVRYLIDRGVPTRRFGA-SGYADLHPLGSNGTDRGR 257

Query: 329 SANRRIDILVED 340
           + NRR++++++ 
Sbjct: 258 ARNRRVEVVLQR 269


>gi|294501552|ref|YP_003565252.1| putative flagellar motor channel protein [Bacillus megaterium QM
           B1551]
 gi|294351489|gb|ADE71818.1| putative flagellar motor channel protein [Bacillus megaterium QM
           B1551]
          Length = 203

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 77/187 (41%), Gaps = 9/187 (4%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220
            +    N++    +  L+    LA   K +       I + +   + +N ++ V+  +  
Sbjct: 20  SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDSILAKVQDYLKENKLQNVITAKRD 79

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+++ + +Q    +F+   +  L +    L ++G + +     I + GHTD  P    
Sbjct: 80  ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 136

Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               NW LS  RA    + L     +S +R   + G+   +  + +  +     NRR++I
Sbjct: 137 RYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNGNLQKNRRVEI 195

Query: 337 LVEDRQG 343
           ++ D + 
Sbjct: 196 IISDPEA 202



 Score = 42.9 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            + +AD +T+++ FF++++ +++ D+   + +           +T+   +   +   +  
Sbjct: 1   MVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNS--------LTSGGSLASVEKSQQSQ 52

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
             + I   + +++ +N +   I +   ++ 
Sbjct: 53  KLDSILAKVQDYLKENKLQNVITAKRDERG 82


>gi|116328262|ref|YP_797982.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116121006|gb|ABJ79049.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 340

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS-INKEENYFLPPLSKE 181
           +    +   F        +  +   T   +K + L K  + + + +          +S+ 
Sbjct: 120 EESERQGKKFRDLLDNLKDELEQEKTACQKKAEALQKEYEKKVAYLEARILALNDEISRL 179

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           K L+  +KK L  LA + +   + L  +     +  +     ++I+I D      FD  S
Sbjct: 180 KNLSENQKKELDRLADQANELENKLGDEIKKGQIRLKRFHNRLVINIDD---RISFDSGS 236

Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299
           +    + +  L KI E+L +    +I I GHTD  P R     DNW+LS +RA S     
Sbjct: 237 AELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSVLHYF 296

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           ++S + + R   ++G+   +  +++D     + NRR+DI+V  R
Sbjct: 297 LESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVVVPR 340


>gi|171318847|ref|ZP_02907983.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171095946|gb|EDT40882.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 226

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + ++  + L+ L A      +       GI I I       +F+   +  LP+   VL +
Sbjct: 81  MPERAPAWLASLDALKTSGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSQ 137

Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I   L+ H+T  I + GHTD+ P  N     NW LS  RA S  + L   GV+  R++ I
Sbjct: 138 IARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI 197

Query: 313 SGFAHHRLKIASD--PMNSANRRIDILV 338
            G A  +  +A D  P  + NRR+ I V
Sbjct: 198 -GRADTQPLVAGDDAPARARNRRVTIFV 224



 Score = 37.2 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
              G W I YAD +T LM  FL ++++ 
Sbjct: 24 GAQSGRWLISYADLITTLMVLFLALYVLQ 52


>gi|304311123|ref|YP_003810721.1| Flagellar motor protein MotB [gamma proteobacterium HdN1]
 gi|301796856|emb|CBL45068.1| Flagellar motor protein MotB [gamma proteobacterium HdN1]
          Length = 359

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 124/327 (37%), Gaps = 60/327 (18%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++  +++   N   W I YADF+T+L AFF+VM+ I++ +D   + +             
Sbjct: 2   RRRELEEETVNHERWVISYADFITLLFAFFVVMYSISSVNDGKYRVLSDSL--------- 52

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
                              +D       T N V +             +E  +       
Sbjct: 53  -------------------VDAFQSASRTINPVSIGEKVATSGNFETAVELPVPG----- 88

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
                            D     D + S+    +   P  +++     ++   L  L+++
Sbjct: 89  -----------------DFPSKEDYKYSVEGLFDDVEPGAARQGDHQDQQTSALSKLSEE 131

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++S L   + +  VK V        + +SI    +  +F  +S+    +   +L KI EV
Sbjct: 132 MASRLQVEIQNADVKVV---QRSEWLEVSI---PSNVLFASASANLSADAARLLGKISEV 185

Query: 259 LAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +   + + G TD  P R      NW LS  RA +  ++ +  GV+  R++ I G+A 
Sbjct: 186 LKPADYSVQVEGFTDNVPIRTEQFPSNWELSAARAAAVVRLFVLGGVNPARLAAI-GYAD 244

Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342
            R     A+    + NRRI+I+V   +
Sbjct: 245 QRALGDNATAEGRALNRRINIIVSTSK 271


>gi|319651875|ref|ZP_08005999.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2]
 gi|317396434|gb|EFV77148.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P   E+I       +L  L + +    S L  + + K ++   T  G+++ + +Q    +
Sbjct: 71  PEQNEEIKENGDSGQLDSLDELLMEIQSFLDENGLEKVIVANRTERGVVLVLQEQ---VL 127

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295
           F+   +  +  +   L K+G +LA+   ++ + GHTD  P        NW LS  RA + 
Sbjct: 128 FESGDASLIDSSYSFLDKVGTLLANMPNLVKVEGHTDDRPITTYRYPSNWELSAARASTV 187

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDRQ 342
            + L  K  +   R   + G+   R  + +  P N   NRR++I++ D +
Sbjct: 188 IRYLTEKHNLDSHRFMAV-GYGETRPIVPNSGPENWEKNRRVEIIISDPK 236



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K +    + P     W + ++D +T+++ FF++++ ++  D    +A+   F    + +
Sbjct: 1   MKPRRRSPEPPKGSPRWMVTFSDLVTLILVFFILLFSMSQIDLMKFQALSDSFR--DRQV 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSID 103
           +     I   +NP +     +   S  
Sbjct: 59  LDFQPSIIPAENPEQNEEIKENGDSGQ 85


>gi|225849649|ref|YP_002729883.1| flagellar motor protein MotB [Persephonella marina EX-H1]
 gi|225645473|gb|ACO03659.1| flagellar motor protein MotB [Persephonella marina EX-H1]
          Length = 231

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+    K+   L+ L       G+  E  + G +I         MF   S+ P  E + 
Sbjct: 82  KLKKKRNKLQKDLNRLEQLLEKAGIEAEVEKHGSIIRFRLNTER-MFPSGSATPYKEVVP 140

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L ++ + L  +   I+I GHTD +P R   + N  LS +RA S  ++    G   DR+ 
Sbjct: 141 LLLEVCKRLKETQFPITIEGHTDNTPIR--FKSNLELSAERALSVLKLFKSCGY-PDRLL 197

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340
              G+  +R  + +D     + NRRI+I+++ 
Sbjct: 198 SARGYGEYRPLVPNDTPENRAKNRRIEIVIDT 229


>gi|255654793|ref|ZP_05400202.1| putative chemotaxis protein [Clostridium difficile QCD-23m63]
 gi|296449538|ref|ZP_06891315.1| chemotaxis protein MotB [Clostridium difficile NAP08]
 gi|296261602|gb|EFH08420.1| chemotaxis protein MotB [Clostridium difficile NAP08]
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KK+   +   + +N +   V       G++IS+ D     +FD   ++    +   + +I
Sbjct: 89  KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSREKIIQI 145

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      I + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 146 GKMLNEMNSYIRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 15  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70

Query: 93  SSQNKIDLSID 103
                    +D
Sbjct: 71  PVVEPGSNDLD 81


>gi|138896104|ref|YP_001126557.1| flagellar motor protein MotB [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267617|gb|ABO67812.1| Chemotaxis MotB protein [Geobacillus thermodenitrificans NG80-2]
          Length = 260

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 89/211 (42%), Gaps = 8/211 (3%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           + ++ +   +S +     G  +    +  + I            +EK  +    ++ ++ 
Sbjct: 42  DQKKFQKIASSFSSAFTGGNGVLDFPNPVEPITPPAAQDEQGQEREKQPSPAMSQKEKEG 101

Query: 196 AKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++   +   + +N + G +    T  G+ I+I+D     +FD  S+    +   +  +
Sbjct: 102 LAQVKEKIDVYIQENKLGGKLQTSLTEEGLAITILDD---ILFDSGSAEVRMKDRRLASE 158

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +  +L  +    + I GHTD  P  N     NW LS+ RA +  +VL+++   + R    
Sbjct: 159 VAALLVMNPPRNVIISGHTDNVPIHNAQFASNWELSVMRAVNFMKVLLENKQLDPRYFSA 218

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
            G+  ++   +++       NRR++IL+  R
Sbjct: 219 KGYGEYKPIASNETAAGRMKNRRVEILILPR 249



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK     + +   SW I YAD +T+L+A F+V++  +  D    + I   F     + 
Sbjct: 1   MGKKKKNRRSEHMNDSWLIPYADLLTLLLALFIVLFSSSQIDQKKFQKIASSF----SSA 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T   G+ D  NP E  +         +   K      +    ++   Q  E    Y+  
Sbjct: 57  FTGGNGVLDFPNPVEPITPPAAQDEQGQEREKQPSP-AMSQKEKEGLAQVKEKIDVYIQE 115

Query: 137 SQQSEHCKNSLTRDS 151
           ++     + SLT + 
Sbjct: 116 NKLGGKLQTSLTEEG 130


>gi|254462550|ref|ZP_05075966.1| flagellar MotB protein [Rhodobacterales bacterium HTCC2083]
 gi|206679139|gb|EDZ43626.1| flagellar MotB protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 411

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 115/396 (29%), Gaps = 78/396 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKN 75
               P    +W   +AD   +LMAFF+++      +    K I                 
Sbjct: 18  PKCPPVGAPAWMATFADLAILLMAFFVLILSFAEMNIPKFKQISGSLRDSFGIQRIVPVV 77

Query: 76  LMTASKGIFDEQNPPERSSQ------------NKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
                  I +    P  S               + ++ +      N     +  +++ ++
Sbjct: 78  EQPEGTTILELNFSPSPSPSITEEATQETTEVREPEVKVPTDNRDNDGKDNLNESDENRE 137

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
               +N          +E    ++ +         +  D + ++N       P    EK 
Sbjct: 138 GLGGKNADGAGDGKSDAEKFAEAIEKIGASVNVSAELVDGKVAVNLNAEQSTPEEMIEKF 197

Query: 184 LAMKRKKRLQDL------------------------------------------------ 195
             + +   + +L                                                
Sbjct: 198 QRVAQALEIAELATGNSENEVLYAGLDKDLSQLIGMVSVIQDQKNAIDGESIEEDKERAQ 257

Query: 196 -----AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                A++  + L   + + I  G++    R G +   ++  +   F   S+        
Sbjct: 258 KALDKAREAEAKLKANLENEIENGLVTVERREGKV--FVNLGSGGAFPSGSASLTGAAQA 315

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++ ++          + + GHTD  P     + RDNW L+  RA S  Q +    +  +R
Sbjct: 316 IVAELAATTNDPDSSVVVAGHTDNVPIGFGALYRDNWDLAAARAASVVQEIEGLNLVPER 375

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               + +   R    +D       NRRI+I +E +Q
Sbjct: 376 EMSATSYGEARPIADNDTPEGREKNRRIEIEIEFKQ 411


>gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD [Janthinobacterium sp. Marseille]
 gi|151280727|gb|ABR89137.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 10/185 (5%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           K    + +         P     + +  + K R+  +A+ I   ++ LV+      V   
Sbjct: 67  KDPVSQNAPILPLPIPTPAQRANEAVVKREKARMTSIARDILKAMAPLVSQG---KVRVT 123

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
            T  G+ + I     + +F    +    ++   L+ + +VL      I + GHTD +P  
Sbjct: 124 QTNRGVSVEI---NASVLFAPGEAKLNAQSEAALRAVAQVLKDVDNDIQVEGHTDNTPIN 180

Query: 279 NI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           N     NW LS  RA S  ++ + +GV+E R+  + G   +    ++D       NRR+ 
Sbjct: 181 NTMFPSNWELSAVRASSVVRLFLANGVAEKRLVAM-GHGANLPVDSNDTTEGRLRNRRVQ 239

Query: 336 ILVED 340
           +++  
Sbjct: 240 LMILS 244


>gi|220927721|ref|YP_002504630.1| OmpA/MotB domain protein [Clostridium cellulolyticum H10]
 gi|219998049|gb|ACL74650.1| OmpA/MotB domain protein [Clostridium cellulolyticum H10]
          Length = 259

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           QQ     +S   + E    +   +     I+       P +  +        ++++ L K
Sbjct: 44  QQLSQSLSSAFGNGETAYVIQGGSSGNSLIDFPATMPSPVIPSKI-----EDQQMEALEK 98

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I+S +    ++ +   V       GI+++I       +F   S+I  P+    + KIG+
Sbjct: 99  EINSLVD---SEGLKGNVAVTMQERGIVVTI---NEKILFKSGSAIIEPKDQDTVIKIGK 152

Query: 258 -VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
            +L+      I + GHTD  P ++     NW LS  RA +  ++L++  G++   I  + 
Sbjct: 153 DILSKIPNKHIRVEGHTDNVPMKSTLYASNWELSAGRAINVLKLLVEKGGINPKMIHPVP 212

Query: 314 GFAHHRLKIAS--DPMNSANRRIDILVED 340
            +  +   + +  D   + NRR+DI++  
Sbjct: 213 -YGEYSPLVPNTTDANRAKNRRVDIVILR 240



 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT------ASKGIFDE 86
           + + YAD M +L+  F+V++ ++  + +  + + Q  +    N  T       S G    
Sbjct: 14  YLLTYADLMNLLLILFIVLYSMSQVNTEKFQQLSQSLSSAFGNGETAYVIQGGSSGNSLI 73

Query: 87  QNPPERSSQNKIDLSIDEHI 106
             P    S        D+ +
Sbjct: 74  DFPATMPSPVIPSKIEDQQM 93


>gi|149375537|ref|ZP_01893307.1| flagellar motor protein MotB [Marinobacter algicola DG893]
 gi|149360242|gb|EDM48696.1| flagellar motor protein MotB [Marinobacter algicola DG893]
          Length = 305

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 105/320 (32%), Gaps = 63/320 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
            ++    + +W + +AD M++LM FF+++   +  D    K I    +            
Sbjct: 5   PEEEKAGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGELSKA---------- 54

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                              +   +    V +       K      E  +           
Sbjct: 55  -----------------FGVQREVPVLEVPMGTSPIFDKFSPAPPEPTVV---------- 87

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
                        +  K T  ++    E       ++ E  +  + +K L+ +   + + 
Sbjct: 88  -------------NEVKQTTTDEQPELETLKSPTDVAVESAIQDELQKTLEQVRSVLETA 134

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +         +      T+    I I+       F   S+    E   +L ++ ++L   
Sbjct: 135 I---------EDGRVNLTQDHHRI-IVRVEEKGAFPSGSADLTWEFEGLLLEMADILVEI 184

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ++I GHTD  P R      NW LS  RA +    L+  G  +     ++G A+   +
Sbjct: 185 PGKLTIEGHTDDVPIRTQRFYSNWDLSAARAAAVANALLAEGKLKPSRLAVTGLAYTEPR 244

Query: 322 IASD--PMNSANRRIDILVE 339
           + +      + NRR++I+++
Sbjct: 245 VPNTSSENRAKNRRVEIIID 264


>gi|52079917|ref|YP_078708.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580]
 gi|52785288|ref|YP_091117.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580]
 gi|52003128|gb|AAU23070.1| motility protein B [Bacillus licheniformis ATCC 14580]
 gi|52347790|gb|AAU40424.1| MotB [Bacillus licheniformis ATCC 14580]
          Length = 259

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ +    S       G  +   +   +           P   + +   +++K  Q L
Sbjct: 44  DAKKFDMLSKSFNAVFTGGTGMMDYSSFTEPKTSTTEDGKSPDQAKDLSEAQKEKDKQSL 103

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K        +   N+ K V  + T  G+L+SI D      FD   +    + I + +++
Sbjct: 104 KKIQEQVNRFIKEKNLQKQVNTKLTDEGLLLSIEDN---IFFDSGKAEIRQQDIPLAKEV 160

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            ++L  +    I I GHTD  P RN   + NW LS+ RA +   +L+++   + +I    
Sbjct: 161 SDLLVLNPPRNIVISGHTDNVPIRNSQFKSNWHLSVMRAVNFMGLLIENPKLDAKIFSAK 220

Query: 314 GFAHHRLKIASDPM--NSANRRIDILVED 340
           G+   +   ++D       NRR++IL+  
Sbjct: 221 GYGEFKPIASNDTEEGRRKNRRVEILILP 249


>gi|220935190|ref|YP_002514089.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996500|gb|ACL73102.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 252

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 13/181 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRL-----QDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222
                 +PPL +E       ++ L     ++ A    S L   +A    ++GV   TT  
Sbjct: 73  PHRQSIVPPLFEEAPATYPGEQPLAEPLAREEAPAAESALEQALARQGGLEGVEVFTTPG 132

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIA 281
            + + I   +   +F   S+    +   +L  +  VL  +   I++ GHTD  P    I 
Sbjct: 133 QVELRI---KEGILFASGSAELRSDGRALLSSLMPVLNAAEGQITVEGHTDNVPIFTPIF 189

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             NW LS  RA    + L+  G++ +R+  + GFA  R    +D     + NRR+ ++++
Sbjct: 190 PSNWELSAARASGVVRQLIALGLAPERLQAV-GFADTRPVAGNDTAEGRAENRRVSLVIQ 248

Query: 340 D 340
            
Sbjct: 249 T 249


>gi|330861238|emb|CBX71489.1| hypothetical protein YEW_CQ10840 [Yersinia enterocolitica W22703]
          Length = 239

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305
              +L+ I  +L      IS+ GHTD  P+ +      NW LS DRA ++ + L+  G+ 
Sbjct: 1   MRDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLD 60

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           E ++ ++ G A           +  NRRI ILV ++Q
Sbjct: 61  EGKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 97


>gi|225849164|ref|YP_002729328.1| chemotaxis protein MotB [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643203|gb|ACN98253.1| chemotaxis protein MotB (Motility protein B) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 265

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 8/153 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K++ +D  KKI   +  +V   N+   V  E    G+ I I+D     +F+  S     E
Sbjct: 76  KQKREDTKKKIKERVEQIVKKLNLEGKVQVEVIPMGVRIRILD---YILFNPCSVEIKKE 132

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVS 305
              +L  + EV+  +   + + GHTD  P     I   NW LS  RA S  + L++S   
Sbjct: 133 YQELLSSVAEVIKEANLPVEVEGHTDNIPPSGNCIYPSNWELSAARAASVVRFLIQSKNL 192

Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              +    G+A  R    +      S NRRI+I
Sbjct: 193 PPAMFTAVGYADTRPIAPNTSEIGRSMNRRIEI 225


>gi|291613031|ref|YP_003523188.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583143|gb|ADE10801.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 259

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI----LAM 186
           ++ +S+  + ++   S++ +   G +          ++++E YF   + +       +  
Sbjct: 34  MYGISSVNEGKYKVFSVSVNQAFGANGKAGEGNAIHLSEQEMYFKSLVDRRNARLAEIQR 93

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K+ + +Q+LAK ++++++  V +     +    T  G+ + I     + +F +  +   P
Sbjct: 94  KQNESMQNLAKDLNASMASFVKNG---QMNVSQTGRGVELEI---NASALFKQGEADIEP 147

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305
           E +  L    +VLA +   I + GHTD  P        NW LS  RA S  ++ +  G++
Sbjct: 148 EALKTLADAAKVLAGNDFAIEVEGHTDNLPISTPKFPSNWELSSARASSVVRLFIDQGIT 207

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             R+  + G A ++   ++D     + NRR+ I V +
Sbjct: 208 AKRLKAV-GSADNQPVDSNDTPEGRARNRRVTITVLN 243



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 21/236 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +  N+   W + YADF+T+L AFF+VM+ I++ ++   K      N      
Sbjct: 1   MARRPKRAEHDNH-ERWMVSYADFITLLFAFFVVMYGISSVNEGKYKVFSVSVNQAFGAN 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ-KKQYQRLENNIFYLS 135
             A +G             N I LS  E   K+ VD +     + +++      N+    
Sbjct: 60  GKAGEG-------------NAIHLSEQEMYFKSLVDRRNARLAEIQRKQNESMQNLAKDL 106

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N+  +   KN     S+ G+ +    +      + E    P   K    A K      D 
Sbjct: 107 NASMASFVKNGQMNVSQTGRGVELEINASALFKQGEADIEPEALKTLADAAKVLAG-NDF 165

Query: 196 AKKISSTLSGLVAD--NIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLP 246
           A ++      L              + R   ++ +   +      +    S+   P
Sbjct: 166 AIEVEGHTDNLPISTPKFPSNWELSSARASSVVRLFIDQGITAKRLKAVGSADNQP 221


>gi|322421034|ref|YP_004200257.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320127421|gb|ADW14981.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 292

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                  N +       +      S  ++ + G+   K  DL + +   E        + 
Sbjct: 69  ASMTGERNALATDKKGLEDALKSTSDAKNQKIGELSQKLGDLGQKLADLEADNKRLRDEV 128

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             L   +++ +Q  +K  S  L  +  +     V     +  + ++++D     +FD   
Sbjct: 129 ARLQKLKEEEVQKTSKTYSDLLEQMKGEMAKGQVTISELKGKLTVNMVDS---VLFDSGK 185

Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRN----IARDNWRLSLDRAYSAY 296
           +   PE +VVLQK+ ++L +   +V+ I GHTD              NW LS  RA +  
Sbjct: 186 AEVKPEGLVVLQKVIDILKNIKDKVVRIEGHTDNVQIVGQLAKRYPTNWELSAARAINVT 245

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           + L + G+    ++ ++ +  H+    +D     + NRRI+I++  ++
Sbjct: 246 RYLQQQGLDPALLAAVA-YGEHKPVAPNDTDEGRAKNRRIEIVLVAKE 292


>gi|315127296|ref|YP_004069299.1| chemotaxis protein [Pseudoalteromonas sp. SM9913]
 gi|315015810|gb|ADT69148.1| putative chemotaxis protein [Pseudoalteromonas sp. SM9913]
          Length = 320

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++         +   W + YAD+MT++ AFF+V++ I    +D  K +            
Sbjct: 4   RRLRHHQLKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEDNIKVLSDSLEHVFDKSA 63

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                        ++ +    D  + E +T  +  L   S  + +Q   L +     SN 
Sbjct: 64  KQYS---------QQGNGVNGDALLLERVTPEAEILYGESIQELEQGPMLLDGQSDNSNI 114

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            Q    K                                                  L  
Sbjct: 115 SQRHLGKP-------------------------------------------------LDS 125

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            ++   S L+ +        E ++  ++I +    +  +F   S++   +   +++KI  
Sbjct: 126 LLAKLQSSLIDEIRSGEASLELSQDWLVIEL---NSGLLFASGSAVAHNKAKEIVKKIEA 182

Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++A     I +RG+TD    RN I R NW LS+ RA S    L + G+   R+  I G+ 
Sbjct: 183 IIASVDNYIRVRGYTDNETIRNEIFRSNWELSVARATSILVELERLGIESARM-AIEGYG 241

Query: 317 HHRLKIASDPM--NSANRRIDILV 338
            +     ++     + NR++ I +
Sbjct: 242 QYSPFADNNTEAGRAENRKVVIAL 265


>gi|302392384|ref|YP_003828204.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204461|gb|ADL13139.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 248

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L  + +KI+S L       +   +  E T  G+ I         +FD   +    +   
Sbjct: 86  ELNRINQKITSYLQE---QELEDEIKVEMTERGLTIRFT---GKVLFDIGRATIKEDAYS 139

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDR 308
           +L KI  +++     I + GHTD  P  N     NW LS  RA    +  ++   ++  +
Sbjct: 140 ILDKISGIISEVPNQIMVEGHTDNLPISNSRFPSNWELSTARATEVVKYFIEENSITPAK 199

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           +S  +G++ ++    +D     + NRR+D+++  R+
Sbjct: 200 LSA-AGYSKYKPVKPNDSPENRALNRRVDVILLKRE 234



 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          ++K   ++  ++  +W   Y D MT+L+AFF++++  ++ D    + + +        L 
Sbjct: 3  RRKKRRNNDESDDSNWLTTYGDMMTLLLAFFVLLYSFSSVDVQKFRNVVEALQGNLGVLK 62

Query: 78 TA 79
            
Sbjct: 63 GG 64


>gi|223936109|ref|ZP_03628023.1| OmpA/MotB domain protein [bacterium Ellin514]
 gi|223895331|gb|EEF61778.1| OmpA/MotB domain protein [bacterium Ellin514]
          Length = 280

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 8/206 (3%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              +  L         L ++         E       +S+ +      +K  + + +   
Sbjct: 46  ATTEGQLRGLEPLPAKLQEAKGNLAKALAENQKNQEQISELQAQVADLQKEKEKVGQTAK 105

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                + +D   + V     +  + ++I+D     MFD   +   P+   VL+KI  +LA
Sbjct: 106 GLEDEMRSDLESRDVTISNLKGKLTVNILD---RVMFDSGEAAVKPDGESVLRKIATILA 162

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318
              E  I + GHTD  P RN    NW LS  RA +A   +  K+GV   R+   +G+  +
Sbjct: 163 GHPELKIQVIGHTDNVPIRNRFASNWELSAARAIAAVHFITEKAGVDPRRVGA-AGYGEY 221

Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342
           R    +      + NRRI I +   +
Sbjct: 222 RPIADNSTAEGRARNRRIAITILPDE 247


>gi|23099679|ref|NP_693145.1| flagellar motor protein MotS [Oceanobacillus iheyensis HTE831]
 gi|22777909|dbj|BAC14180.1| flagellar motor aparatus [Oceanobacillus iheyensis HTE831]
          Length = 251

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E +    E+  +  +    +   + +K   +L + + +    L  +N+   +      
Sbjct: 71  PTESTGENSEDGKIDEIEPIYLANEEEEKSTDELDELMMNVSQYLEENNLKDVITANRNE 130

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G+++ +   +   +F+   +  L E    L  IG +L+     +++ GHTD+ P  N  
Sbjct: 131 RGVVLVL---QEKILFESGEAEILEEAGPFLNHIGTLLSELDNQVNVEGHTDSRPISNYR 187

Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
              NW LS  RA S  +  +++           G+A        +++   S NRR++I++
Sbjct: 188 YPSNWELSGARASSVVRYFIEAESLHMSRFSTVGYADTVPLEPNSNEANMSKNRRVEIII 247

Query: 339 ED 340
            D
Sbjct: 248 LD 249



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++     +      W + Y+D +T+++ FF++++ ++  D      + + F    + +
Sbjct: 1   MKRRSIRHQSKKGAPKWMVTYSDMITLILVFFILLFSMSQIDQTKFDQVTESFQ--NRMI 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDE 104
           +         +NP E + +N  D  IDE
Sbjct: 59  LDFLPSAVPLENPTESTGENSEDGKIDE 86


>gi|226314899|ref|YP_002774795.1| chemotaxis protein [Brevibacillus brevis NBRC 100599]
 gi|226097849|dbj|BAH46291.1| probable chemotaxis protein [Brevibacillus brevis NBRC 100599]
          Length = 260

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 109/264 (41%), Gaps = 8/264 (3%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           + D++   E+  +    LS  + IT   V + I +  Q K  Q  + ++     S +  H
Sbjct: 1   MHDDRLYDEKELEKSWLLSYSDLITLLFVIVIIIAATQTKSIQSQKEDVQKEKASLEKVH 60

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
               L    +K +   +   LE    + +   +   S++     KR   L D +++   T
Sbjct: 61  ESLDLLNL-QKLELQREVYQLEARQKELKGEKVKEGSEDTANVPKRPMGLSDSSERDMET 119

Query: 203 LSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +   ++  + +  + +E T  G+ I +     T +F   S+    +   V+  +  VL  
Sbjct: 120 VRNQLSSALAELNLDYEETEEGLRIRL---PETILFTSGSADLQAQGKQVVGTVAGVLKR 176

Query: 262 STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + I G+TD  P  R+  + NW LS  RA S  + ++ +         ++G   ++ 
Sbjct: 177 FEHKVRIEGYTDDVPISRSSFQSNWELSSARAISVMREMVDANSLPASRFTVAGLGEYKP 236

Query: 321 KI--ASDPMNSANRRIDILVEDRQ 342
            +  ++    + NRR++I++   +
Sbjct: 237 LVDNSNAENRAKNRRVEIVILGEK 260


>gi|255099860|ref|ZP_05328837.1| putative chemotaxis protein [Clostridium difficile QCD-63q42]
          Length = 246

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KKI   +   + +N +   V       G++IS+ D     +FD   +I    +   + +I
Sbjct: 89  KKIGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 145

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      + + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 15  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70

Query: 93  SSQNKIDLSID 103
                    +D
Sbjct: 71  PVVEPGSNDLD 81


>gi|56421066|ref|YP_148384.1| flagellar motor protein MotB [Geobacillus kaustophilus HTA426]
 gi|56380908|dbj|BAD76816.1| motility protein B (flagellar motor rotation) [Geobacillus
           kaustophilus HTA426]
          Length = 259

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 10/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q+     ++         D     +      ++E           ++  K K+ L  +  
Sbjct: 47  QEIARAFSTAFAGGTGVLDFQSPIEPITPPAQDEEGRHQAKQPSPVVNGKEKEELGQIKA 106

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI S +     + +   +    T  G+ I+I+D     +FD  S+    +   +  +I  
Sbjct: 107 KIDSYIH---DNKLTGKLQTSLTDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISA 160

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L  +    I I GHTD  P  N     NW LS+ RA +  +VL+++   + R     G+
Sbjct: 161 LLVMNPPRNIIISGHTDNVPIHNEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGY 220

Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDR 341
             ++   ++        NRR++IL+  R
Sbjct: 221 GEYKPIASNATAAGRMKNRRVEILILPR 248


>gi|34497269|ref|NP_901484.1| flagellar motor protein MotD [Chromobacterium violaceum ATCC 12472]
 gi|34103125|gb|AAQ59488.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472]
          Length = 277

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 10/187 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
                T    ++ +         S  +    +   +L  L + ++  LS LV       V
Sbjct: 67  QTTPPTGGANTMIEIPQTKPIAKSTARNRKAEEAAKLGQLTQNLAKALSPLVQSG---EV 123

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
               +  GI I I D     +F    ++P  +++ ++  + ++LA     I + G TD +
Sbjct: 124 TITQSNQGIHIDIRDS---ALFAVGQAVPNQQSMPLMSNMAKLLAGVDNAIKVEGFTDDA 180

Query: 276 PFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332
           P R  +   NW LS  RA    ++  +SGV   R+  + G   ++    +      + NR
Sbjct: 181 PIRTPVFPSNWELSAARAGGVVRLFQESGVDPQRLVAV-GHGANQPVADNATADGRARNR 239

Query: 333 RIDILVE 339
           R+ I V+
Sbjct: 240 RVTISVQ 246


>gi|255305748|ref|ZP_05349920.1| putative chemotaxis protein [Clostridium difficile ATCC 43255]
          Length = 246

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KKI   +   + +N +   V       G++IS+ D     +FD   +I    +   + +I
Sbjct: 89  KKIGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 145

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      + + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
          W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N 
Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNS 67


>gi|300114849|ref|YP_003761424.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540786|gb|ADJ29103.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113]
          Length = 280

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 89/305 (29%), Gaps = 71/305 (23%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             +      +W I  AD M++LM+FF+++   +  D    K +                 
Sbjct: 12  PREERTGAPAWVITLADLMSLLMSFFVLLLSFSEMDVLKYKQVAGSM------------- 58

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                         K    +   I             Q+    R     +        + 
Sbjct: 59  --------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWNEIRQDTIDE 104

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K +L       +D                                +  + +L  K+   
Sbjct: 105 TKQTLDFSDAPIQD-------------------------------TEAEVAELQDKLQHE 133

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +   +       +  ET +  I+I I   +    F   S+I   E    L KI  +L   
Sbjct: 134 IDEGL-------ITIETIKDRIIIRI---QEKGSFPSGSAIFSREFKPALDKIRAILKKI 183

Query: 263 TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320
              + + GHTD  P   +  R NW LS  RA S    L+    +S  R   + G+A  + 
Sbjct: 184 EGKLIVAGHTDDRPIQTSRFRSNWELSTARAVSVVHYLLATHEISPGRFV-LEGYADTQP 242

Query: 321 KIASD 325
              ++
Sbjct: 243 LAPNE 247


>gi|316932465|ref|YP_004107447.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600179|gb|ADU42714.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 341

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 106/312 (33%), Gaps = 16/312 (5%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           +L  F +V + ++       KA+ +           L     G  + +    +       
Sbjct: 33  LLTVFLVVQFFLSQEVTGKDKALAELNARIAQLNDILSLEKLGKLNLEEQLAQMRAGLSA 92

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
              +    K   D   G+ N                    S         + +      +
Sbjct: 93  AETERDRVKGLYDGLAGAGNDAAGRAGELGKALDSEKQISSRALAQVEVLNQQIAALRRQ 152

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              LE +++  E       S+   L  +    L    +++S   S       ++ +L + 
Sbjct: 153 LAALEDALDASEKRGKESQSRIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGDR 210

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271
               I+      ++   FD   ++ LPE    L K+ + L        A    V+ + GH
Sbjct: 211 PDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKVADALKELDKQIPAELPWVVRVDGH 270

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD  P     R NW LS  RA S  Q LM  GV   R+   +GFA  +    +D  ++  
Sbjct: 271 TDRRPITGAFRSNWELSSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTEDAYR 329

Query: 330 ANRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 330 RNRRIELKLTER 341


>gi|82702444|ref|YP_412010.1| flagellar motor protein MotD [Nitrosospira multiformis ATCC 25196]
 gi|82410509|gb|ABB74618.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 288

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 10/217 (4%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK---EENYFLPPLSKEKILAM 186
            +      + +    N+    S++   +   +     + +   EE+  +    +      
Sbjct: 39  QVNEGKYQRMAGSLVNAFGAQSDRSVLITPESAPSSPVQESPTEEDRSIKKARRLAEAQR 98

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +++ ++ +A+ + +      +      V    +  G+ + I       +F    ++   
Sbjct: 99  GQQEAMEVIARDVVAAFQPFRSLIENGQVRVIPSSRGLAVEI---NAKVLFAPGQAVLEQ 155

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVS 305
            +  VL+ + +VL ++   I + GHTD+ P   +    NW LS  RA S  ++L+ SGV 
Sbjct: 156 NSARVLEAVAQVLKNNDYPIQVEGHTDSIPIVTDKFPSNWELSAVRASSVVRLLIGSGVE 215

Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             R++ + G+  +R   ++D  +    NRR+ I++  
Sbjct: 216 AARLTAV-GYGENRPVDSNDTEDGRTRNRRVTIMILS 251



 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 68/205 (33%), Gaps = 15/205 (7%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K  +++  N+   W + YADF+T+L+A F+VM+ ++  ++   + +           
Sbjct: 1   MARKRKLEERENH-ERWLVSYADFITLLLALFVVMYAVSQVNEGKYQRMAGSLVNAFGAQ 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
              S  I  E  P     ++  +        +   + + G     +   R     F    
Sbjct: 60  SDRSVLITPESAPSSPVQESPTEEDRSIKKARRLAEAQRGQQEAMEVIARDVVAAFQPFR 119

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S         +                 + +  E N  +     + +L     + L+ +A
Sbjct: 120 SLIENGQVRVIP--------------SSRGLAVEINAKVLFAPGQAVLEQNSARVLEAVA 165

Query: 197 KKISSTLSGLVADNIVKGVLFETTR 221
           + + +    +  +     +   T +
Sbjct: 166 QVLKNNDYPIQVEGHTDSIPIVTDK 190


>gi|315122279|ref|YP_004062768.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495681|gb|ADR52280.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 126

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 88/125 (70%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           MN   D +Q+ +QFI IKKKV +D     LGSWKIVYADFMT LM+FFLVMWI+NATDD+
Sbjct: 1   MNYQKDNDQKKNQFIFIKKKVVVDLEKKKLGSWKIVYADFMTALMSFFLVMWIVNATDDN 60

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           TKK IE YFNPFG NL+ ASKGIF++ N P    +N I+  ID+  T N+ +LK     +
Sbjct: 61  TKKVIENYFNPFGPNLLMASKGIFEKNNSPNNFPKNSINQPIDKKTTNNNFNLKDSIARK 120

Query: 121 KKQYQ 125
           KK  +
Sbjct: 121 KKNIK 125


>gi|325294743|ref|YP_004281257.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065191|gb|ADY73198.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 233

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +   +P    +    MK ++ ++   ++I   L  +       GV  E  + G  I +  
Sbjct: 68  QGKRIPLDFPDMYPKMKTRRAIEQKLQEIHQMLKKM-------GVKSEIAKYGTSIRLRI 120

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSL 289
             +  +F   S  P  ETI ++ ++ + L      I+I GHTD  P R+ I   NW LS 
Sbjct: 121 NTDK-LFPPGSEKPYKETIPLIMEMCKKLKELELPITIEGHTDNVPIRSKIFPSNWELSA 179

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA S  ++ ++ G    ++S  +G   +R    +      + NRRI+I++
Sbjct: 180 ARAVSVLRLFIQCGYDPRKLSA-AGCGPYRPIAPNTTPEGRAKNRRIEIVI 229



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75
          + +K   +       +W   + D M++L+ FF++++ ++    +   +AI+     FG +
Sbjct: 1  MARKKKEECKAP--PAWLTSFGDLMSLLLTFFILLYSMSTISLEKFYQAIKGIIQAFGGH 58

Query: 76 LMTASKGIFDEQNPP 90
           +   + +   +  P
Sbjct: 59 YVIHEERVIQGKRIP 73


>gi|304407655|ref|ZP_07389306.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343138|gb|EFM08981.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 263

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISII 229
           +   + P  ++   A++ +KR     + + + +   + +N + + V       G+ I + 
Sbjct: 81  KPAPVKPPEEKPNAALEEEKRKNQELENVFAIIQAYIKNNKLEEKVFVTNEEQGVSIRLS 140

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRL 287
           DQ    +FD   +        +L K+  +       ISI GHTD  P +     RDNW L
Sbjct: 141 DQ---FLFDLGKADLKKAARPILDKLSSLFVKLDHPISIEGHTDNLPIQPGGEFRDNWAL 197

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           S  R+ S  +   +    E    +I+G+   R    +  D   S NRR++I +  
Sbjct: 198 SAGRSLSVLRYFTEIAQLEPTKFQIAGYGDTRPIAPNTTDANRSRNRRVEITILR 252


>gi|260682442|ref|YP_003213727.1| putative chemotaxis protein [Clostridium difficile CD196]
 gi|260686041|ref|YP_003217174.1| putative chemotaxis protein [Clostridium difficile R20291]
 gi|260208605|emb|CBA61322.1| putative chemotaxis protein [Clostridium difficile CD196]
 gi|260212057|emb|CBE02637.1| putative chemotaxis protein [Clostridium difficile R20291]
          Length = 248

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KK+   +   + +N +   V       G++IS+ D     +FD   ++    +   + +I
Sbjct: 91  KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSRDKIIQI 147

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      + + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 148 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 17  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72

Query: 93  SSQNKIDLSIDE 104
                    +D 
Sbjct: 73  PVVEPGSNDLDS 84


>gi|172062649|ref|YP_001810300.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171995166|gb|ACB66084.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 228

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  + L+ L A      +       GI I I       +F+   +  LP+   VL +I 
Sbjct: 85  ERAPAWLTSLDALKTNGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSEIA 141

Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L+ H+T  I + GHTD++P  N     NW LS  RA S  + L   GV+  R++ I G
Sbjct: 142 RALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI-G 200

Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338
            A  +  +ASD  P  + NRR+ I V
Sbjct: 201 RADTQPLVASDDAPARARNRRVTIFV 226



 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
          +      G W I YAD +T LM  FL ++++ 
Sbjct: 21 EAEGAQSGRWLISYADLITTLMVLFLALYVLQ 52


>gi|302878266|ref|YP_003846830.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302581055|gb|ADL55066.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 281

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIP 244
           +++++++Q   K + ++L  ++   I +G++    T+ G+++ I       +F +     
Sbjct: 84  LEQQRKIQAQMKAVDASLREVMGPLIAQGLVGVHQTKRGVVVDISAST---LFREGEEKL 140

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
            P     LQ++  VL+   + + + GHTD  P +      NW LS  RA S  + L+  G
Sbjct: 141 QPGAQETLQQVAVVLSRENQSVEVEGHTDDVPIKTTQFPSNWELSSGRASSVVRTLVTYG 200

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           V E R++ + G A ++  +A+D     + NRR+ I +   +
Sbjct: 201 VPEKRLAAV-GMAANQPVVANDTPENRAKNRRVSITILSPE 240



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 29/204 (14%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W I YADF+T+L AFF+VM+ I++ ++   K      N       
Sbjct: 3   RRRKRAEHDNH--ERWLISYADFVTLLFAFFVVMYSISSVNEGKYKTFSDSLN------- 53

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                     +    SS   +  +  +               Q+++ Q     +      
Sbjct: 54  ----------SAFSESSATVVPSTQGQLFKVLVDKRDARMLEQQRKIQAQMKAVDASLRE 103

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
                    L    +  + +           + E    P            ++ LQ +A 
Sbjct: 104 VMGPLIAQGLVGVHQTKRGVVVDISASTLFREGEEKLQPGA----------QETLQQVAV 153

Query: 198 KISSTLSGLVADNIVKGVLFETTR 221
            +S     +  +     V  +TT+
Sbjct: 154 VLSRENQSVEVEGHTDDVPIKTTQ 177


>gi|254974362|ref|ZP_05270834.1| putative chemotaxis protein [Clostridium difficile QCD-66c26]
 gi|255091756|ref|ZP_05321234.1| putative chemotaxis protein [Clostridium difficile CIP 107932]
 gi|255313486|ref|ZP_05355069.1| putative chemotaxis protein [Clostridium difficile QCD-76w55]
 gi|255516174|ref|ZP_05383850.1| putative chemotaxis protein [Clostridium difficile QCD-97b34]
 gi|255649270|ref|ZP_05396172.1| putative chemotaxis protein [Clostridium difficile QCD-37x79]
 gi|306519371|ref|ZP_07405718.1| putative chemotaxis protein [Clostridium difficile QCD-32g58]
          Length = 246

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KK+   +   + +N +   V       G++IS+ D     +FD   ++    +   + +I
Sbjct: 89  KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSRDKIIQI 145

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      + + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 15  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70

Query: 93  SSQNKIDLSIDE 104
                    +D 
Sbjct: 71  PVVEPGSNDLDS 82


>gi|39933998|ref|NP_946274.1| hypothetical protein RPA0921 [Rhodopseudomonas palustris CGA009]
 gi|192289418|ref|YP_001990023.1| hypothetical protein Rpal_0991 [Rhodopseudomonas palustris TIE-1]
 gi|39647845|emb|CAE26365.1| possible flagellar motor protein MotB [Rhodopseudomonas palustris
           CGA009]
 gi|192283167|gb|ACE99547.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 341

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 108/312 (34%), Gaps = 16/312 (5%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           +L  F +V + ++       KA+ +           L     G  + +    +       
Sbjct: 33  LLTVFLVVQFFLSQEVTGKDKALAELNAKIAQLNDILSLEKLGKLNLEEQLAQMRAGLSA 92

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
              +    K   D   G+ N         N          +         + +      +
Sbjct: 93  AESERDRVKGLYDGLAGAGNDAAGRATELNKALDSEKQISARALAQVEVLNQQIAALRRQ 152

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              LE++++  E       +K   L  +    L    +++S   S       ++ +L + 
Sbjct: 153 LAALEEALDASEKRGKESQNKIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGDR 210

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271
               I+      ++   FD   ++ LPE    L K+ + L        A    V+ + GH
Sbjct: 211 PDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKVADALKELDKKIPAELPWVVRVDGH 270

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD  P     + NW LS  RA S  Q LM  GV   R+   +GFA  +    +D  ++  
Sbjct: 271 TDKRPITGSFKSNWELSSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTDDAYK 329

Query: 330 ANRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 330 RNRRIELKLTER 341


>gi|83589634|ref|YP_429643.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83572548|gb|ABC19100.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 11/182 (6%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           + + ++     NY     + E   A+ R + +    + + + L+   A+ +   V     
Sbjct: 64  SPIVETEPAPSNYPENLQTPEAAAALARAQEMMQTYQTVKNFLT---ANGLESEVEVRYE 120

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             GI +   D +   +FD   +   PE   +L K+  +L+     + + G+TD  P   +
Sbjct: 121 DRGIAL---DIKERILFDSGRADLKPEARQLLDKLSGLLSRLPNEVKVEGYTDNRPIHTV 177

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
               NW LS  RA    +  ++   +  DR   I G+  +     +D     + NRR+ +
Sbjct: 178 QFPTNWELSTARAARVVRYFIEEHHLQPDRFMAI-GYGEYHPLYPNDSPEHMAENRRVVL 236

Query: 337 LV 338
           L+
Sbjct: 237 LL 238


>gi|261418451|ref|YP_003252133.1| flagellar motor protein MotB [Geobacillus sp. Y412MC61]
 gi|319767588|ref|YP_004133089.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC52]
 gi|261374908|gb|ACX77651.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC61]
 gi|317112454|gb|ADU94946.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC52]
          Length = 259

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 10/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q+     ++         D     +      ++E            +  K K+ L  +  
Sbjct: 47  QEIARAFSTAFAGGTGVLDFQSPIEPITPPAQDEEGRHQAKQPSPAVNGKEKEELGQIKA 106

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI S +     + +   +    T  G+ I+I+D     +FD  S+    +   +  +I  
Sbjct: 107 KIDSYIH---DNKLTGKLQTSLTDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISA 160

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +L  +    I I GHTD  P  N     NW LS+ RA +  +VL+++   + R     G+
Sbjct: 161 LLVMNPPRNIIISGHTDNVPIHNEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGY 220

Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDR 341
             ++   ++        NRR++IL+  R
Sbjct: 221 GEYKPIASNATAAGRMKNRRVEILILPR 248


>gi|126698325|ref|YP_001087222.1| putative chemotaxis protein [Clostridium difficile 630]
 gi|115249762|emb|CAJ67579.1| putative OmpA/MotB proton channel [Clostridium difficile]
          Length = 248

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           KK+   +   + +N +   V       G++IS+ D     +FD   +I    +   + +I
Sbjct: 91  KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 147

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313
           G++L      + + GHTD    +N   + NW LS+ RA +  Q+L+  +G++ D++S + 
Sbjct: 148 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           G+   R     +S+   S NRR+DI++ D +
Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+LM FF++M+ ++  D +  K + Q  N    +    S G+ +  N    
Sbjct: 17  WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72

Query: 93  SSQNKIDLSID 103
                    +D
Sbjct: 73  PVVEPGSNDLD 83


>gi|183221220|ref|YP_001839216.1| hypothetical protein LEPBI_I1834 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911311|ref|YP_001962866.1| endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775987|gb|ABZ94288.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779642|gb|ABZ97940.1| Putative outer membrane protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 354

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 11/242 (4%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
             I K   D +     + ++ +  +         +  E  +  L ++ +  +      D 
Sbjct: 110 RSIEKKGTDKERTLAEENRKREEKDRAEIDSLKRKLEEKERECLQKEQKLRESYESKMD- 168

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
              + +        L+  + L  ++K+ L+ L+++       L  +     +  +     
Sbjct: 169 --ELKERIRNLEEELASLRKLTKEQKRELERLSEQTKEFEEKLAKEITSGQIRLKRFHNK 226

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           ++I+I D+ +   FD  SS   P  +  ++KI ++LA      I + GHTD  P +   R
Sbjct: 227 LIINIDDKIS---FDSGSSELKPAILPAIEKIRDILASYPENYIVVEGHTDNVPIKTKFR 283

Query: 283 DNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +NW LS +RA S  + +L    ++    S  +G+  H+  + +      + NRR+DI+V 
Sbjct: 284 NNWHLSSERALSVLEFILQNKNLNPKNFSS-AGYGEHQPIVPNSTKENKALNRRVDIVVI 342

Query: 340 DR 341
            R
Sbjct: 343 PR 344


>gi|74317269|ref|YP_315009.1| flagellar motor protein MotD [Thiobacillus denitrificans ATCC
           25259]
 gi|74056764|gb|AAZ97204.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 263

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
              +   S  +  A++ +  + ++A  +   +  LV +     V    +R G+ I I   
Sbjct: 84  PPEVRQRSLRQQQAIEEQAHMTEVASNLLDVMGPLVKEG---KVRVTQSRRGVSIEI--- 137

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLD 290
               +F+   +   PE++ VL+ +   L H    I I GHTD  P  N     NW LS  
Sbjct: 138 NANVLFEPGRAELAPESLAVLRAVAAQLRHEPFNIEITGHTDIVPISNSVFASNWELSAV 197

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           RA S  ++L   G++  R+  I G    +   ++      + NRR+++++  
Sbjct: 198 RATSVVRLLADGGIAPSRLFAI-GREASQPIASNGTAEGRARNRRVELMILS 248



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-----NPFGKNLMT 78
           D    N   W + YADF+T+L AFF+VM+ ++A ++   + +          P  +  + 
Sbjct: 17  DSDHENHDRWLVSYADFITLLFAFFVVMYAVSAVNEGKYRVLANALGGAFGKPVAELPVP 76

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
              G        +RS + +  +    H+T+ + +
Sbjct: 77  QLPGTTLPPEVRQRSLRQQQAIEEQAHMTEVASN 110


>gi|307824498|ref|ZP_07654723.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307734482|gb|EFO05334.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 265

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 13/212 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA---MKRKKRL 192
           +    E   N   + +E       +          EN     + + + L+   +K +K+L
Sbjct: 33  SDSLGEAFSNKEQQGNEIAPIQIGTLPTTIQPIPLENPTAVEVEERRELSEEILKERKQL 92

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             ++ +    L+  + DN+         +    I + +  +  +F    +    + I VL
Sbjct: 93  SQVSGQFEQVLAPFIQDNL-----VSVKKNDYWIEL-EMNSEMLFLSGEAELSKKAIPVL 146

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           QKI EV+     +++I GHTD  P  NI  R NW LS  RA S     +K G++  R+S 
Sbjct: 147 QKIVEVINPLPNMVNIEGHTDNIPIDNIKFRSNWDLSSARATSVVHEFVKEGINPPRLSA 206

Query: 312 ISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           I G+        +  +     NRR+ +++  +
Sbjct: 207 I-GYGEFHPIGDNKIEAGRFKNRRVVLVLMSQ 237



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            + YADF+T+L AFF+VM+ I++ ++   K +         N       I   Q     +
Sbjct: 1   MVSYADFITLLFAFFVVMYSISSVNEGKYKTLSDSLGEAFSNKEQQGNEIAPIQIGTLPT 60

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           +   I            ++       ++++    E        SQ S   +  L    + 
Sbjct: 61  TIQPI-----------PLENPTAVEVEERRELSEEILKERKQLSQVSGQFEQVLAPFIQD 109

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
                K  D    I  E N  +  LS E  L+ K    LQ + + I+   + +  +    
Sbjct: 110 NLVSVKKNDY--WIELEMNSEMLFLSGEAELSKKAIPVLQKIVEVINPLPNMVNIEGHTD 167

Query: 214 GVLFETTR 221
            +  +  +
Sbjct: 168 NIPIDNIK 175


>gi|83590576|ref|YP_430585.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
 gi|83573490|gb|ABC20042.1| OmpA/MotB [Moorella thermoacetica ATCC 39073]
          Length = 244

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 8/187 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ +   L +++++        +   ++    +     +LA       S L    +   V
Sbjct: 51  DMARYQQLAQALSQIFTSSAGSMVLPELGNGNQVTPPDELAGFSQDLQSYLAEQGLKDQV 110

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
               T  G++IS      + +FD+  +   P ++ +LQKI   L      I + G TD  
Sbjct: 111 FVTATDQGLIISFT---GSVLFDRGQATLRPASVPILQKIAGYLGQVPNYIGVAGSTDDL 167

Query: 276 PF-RNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSAN 331
           P   +    NW LS+ RA +        +G+S  R   + G+  +     ++       N
Sbjct: 168 PINTSQFPTNWELSVIRATTVIRYFTETAGLSPSRFVAL-GYGQYHPLFPNNSEEDRRKN 226

Query: 332 RRIDILV 338
           RR+DI++
Sbjct: 227 RRVDIII 233



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 16  IIKK--KVAIDDTPNNLGS----WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           I K+      +   ++ G+    W + YAD +T+LMAFF+VM+ ++  D    + + Q  
Sbjct: 3   IFKRLQAGEENQGSSHAGAGSMRWLLTYADLITLLMAFFIVMYAVSKVDMARYQQLAQAL 62

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                 + T+S G          +     D          S   + G  +Q       + 
Sbjct: 63  ----SQIFTSSAGSMVLPELGNGNQVTPPDELAGFSQDLQSYLAEQGLKDQVFVTATDQG 118

Query: 130 NIFYLSNSQQSEHCKNSLTRDS 151
            I   + S   +  + +L   S
Sbjct: 119 LIISFTGSVLFDRGQATLRPAS 140


>gi|84514795|ref|ZP_01002158.1| flagellar MotB protein [Loktanella vestfoldensis SKA53]
 gi|84510954|gb|EAQ07408.1| flagellar MotB protein [Loktanella vestfoldensis SKA53]
          Length = 411

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 117/397 (29%), Gaps = 78/397 (19%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKN 75
               P    +W   +AD  T+LMAFF+++      +    K I                 
Sbjct: 16  PKCPPVGAPAWMATFADLATLLMAFFVLLLSFAEMNVPKFKQISGSLKDSFGVQKIIPVV 75

Query: 76  LMTASKGIFDEQNPPERSS--------------QNKIDLSIDEHITKNSVDLKIGSTNQK 121
                  + +    P  S               + ++ +  D            G T+  
Sbjct: 76  EQPKGTTVLELNFSPSPSPSVTEEATQETTEIKEPELKIPTDNRDMDGEDKQLEGETDAD 135

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                   NI    N   +E    +L +         +  D + +I+       P    E
Sbjct: 136 GLGGETAENIADNENMSDAEKLAAALEQIGTAVNIEAEIVDGKVAIDMNAEDASPQELIE 195

Query: 182 K------------------------------------ILAMKRKKRLQDLAKKISSTLSG 205
           K                                    +++  ++++ +     +   LS 
Sbjct: 196 KFQRVGQAIEIAGLATGKAEQEILFGGLDETLNDLISMVSEIQRQQQESGGATLDEALSQ 255

Query: 206 LV--------ADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETI 249
           +         A+  ++  L +    G+ +++  +             F   S+    +  
Sbjct: 256 MARATEKALEAEAQLRANLQDEIDQGL-VTVEQRDGKVFVNLGAGGAFPSGSADLTLQAR 314

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            ++ ++  V    T  + + GHTD  P     + RDNW L+  RA S  Q +  S  +  
Sbjct: 315 GIIDELAAVTVDPTSKVVVSGHTDNVPISFGALYRDNWDLAAARAASVVQEIEASIPAPG 374

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           R      F   +     A+      NRRI++ +E  Q
Sbjct: 375 REMSAISFGETKPVADNATAEGRERNRRIELEIEFEQ 411


>gi|153931184|ref|YP_001384895.1| chemotaxis motB protein [Clostridium botulinum A str. ATCC 19397]
 gi|152927228|gb|ABS32728.1| chemotaxis protein MotB [Clostridium botulinum A str. ATCC 19397]
          Length = 420

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241


>gi|77164352|ref|YP_342877.1| flagellar motor protein MotB [Nitrosococcus oceani ATCC 19707]
 gi|254433318|ref|ZP_05046826.1| OmpA family protein [Nitrosococcus oceani AFC27]
 gi|76882666|gb|ABA57347.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|207089651|gb|EDZ66922.1| OmpA family protein [Nitrosococcus oceani AFC27]
          Length = 280

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 95/324 (29%), Gaps = 73/324 (22%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
            +      +W I  AD M++LM+FF+++   +  D    K +                  
Sbjct: 13  QEERTGAPAWVITLADLMSLLMSFFVLLLSFSEMDVLKYKQVAGSM-------------- 58

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
                        K    +   I             Q+    R     +        +  
Sbjct: 59  -------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWNEIRQDTIDET 105

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +L       +D                                +  + +L  K+   +
Sbjct: 106 KQTLDFSDAPTQD-------------------------------TEAEVAELQDKLQHEI 134

Query: 204 -SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
             GL+    +K  +    R               F   S+I   E    L KI  +L   
Sbjct: 135 DEGLITIETIKDRIIIRIRE-----------KGSFPSGSAIFSQEFKPALDKIRAILKKI 183

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              + + GHTD  P +    R NW LS  RA S    L+ +     R   + G+A  +  
Sbjct: 184 EGKLIVAGHTDNMPIQTTRFRSNWELSTARAVSVVHYLLATHEISPRRFVLEGYADTQPL 243

Query: 322 IASD--PMNSANRRIDILVEDRQG 343
             ++     + NRRI+I V   +G
Sbjct: 244 APNENAANRARNRRIEITVLPGEG 267


>gi|298505133|gb|ADI83856.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens
           KN400]
          Length = 289

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           +L + +++ E       +        +++++++++K     L  +  +     V     +
Sbjct: 104 ELRQKVSQLEAENARLKADIASTQKAKEEKVREVSKTYEDLLDKMKGEIAQGQVTISELK 163

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN- 279
             + ++++D     +FD   +   P  + +LQK+ E+L   T+  I I GHTD       
Sbjct: 164 GKLTVNMVD---AILFDSGKAEVKPAGMDILQKVVEILKDVTDKAIRIEGHTDNVQIVGN 220

Query: 280 ---IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
                  NW LS  RA +  + L   G+    +S ++ +  +     +D     + NRRI
Sbjct: 221 LAKRFPSNWELSSARAINVTRFLQSRGIDPAVLSAVA-YGEYHPVAPNDTDEGKAKNRRI 279

Query: 335 DILVEDRQG 343
           +I++  +  
Sbjct: 280 EIILVPKDA 288


>gi|222053743|ref|YP_002536105.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563032|gb|ACM19004.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 258

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
                   P    K    K     +D     ++  + L+       V  E  R G+++S+
Sbjct: 79  PNMRPQSLPQKAVKSGKTKSHAEEKDFKAVKAAIEAYLLKTGAQDKVSVEINRRGLVVSL 138

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287
              +    FD  S+I       +L  + E L + T  + + GHTD  P  +     NW L
Sbjct: 139 ---KEAGFFDSGSAIVQQSAYSLLAHVAESLVNYTNPVRVEGHTDNVPINSRTFPSNWEL 195

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           S  RA +  Q L+K      ++IS  +GF  +R    +      S NRR+DI++  
Sbjct: 196 STARATNLVQYLIKYYEFEPEKISA-TGFGEYRPVADNTTVDGRSKNRRVDIVLLS 250



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          + +K   +    N+  W + YADF+T+L A F+ ++ ++ TD    + + +   
Sbjct: 1  MARKKKPEKEA-NMERWMVSYADFITLLFAVFVTLYAMSQTDKKKAEEVVESLR 53


>gi|321312511|ref|YP_004204798.1| flagellar motor protein MotS [Bacillus subtilis BSn5]
 gi|320018785|gb|ADV93771.1| flagellar motor protein MotS [Bacillus subtilis BSn5]
          Length = 242

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           DL K      SI KE N   P  +  ++K  +    K+ +D   ++   ++  + DN +K
Sbjct: 49  DLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLK 108

Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +  +    G+++ +   +   +FD   +  L     +L +I  +L      I + GHT
Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328
           D+          NW LS  RA    Q    K  +   R   + G+A  +      ++   
Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224

Query: 329 SANRRIDILVEDRQ 342
             NRR++I+++  +
Sbjct: 225 KENRRVEIVIKKSK 238



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++        +  SW + + D +T+++ FF++++ ++  D    KA        G  L  
Sbjct: 10  RRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQP 69

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
               I  +   P  S   K +   D+ + K +  +K      +   +R E  +
Sbjct: 70  DQTSIEKKNTSP--SDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120


>gi|229121280|ref|ZP_04250511.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228662125|gb|EEL17734.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
          Length = 224

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 13/180 (7%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           K L K +D E+   K     +P +S EK    M  KKR+ +L KK+ +     V +N + 
Sbjct: 45  KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 100

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            V      TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD
Sbjct: 101 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 157

Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           + P  N     NW LS  R A   + ++    V + R++ + G+A  +  + +D  +  N
Sbjct: 158 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPND--SPQN 214


>gi|329904710|ref|ZP_08273911.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547854|gb|EGF32612.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 270

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 176 PPLSKEKILAM--KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           PP ++ + + +  + K+ +  +A+ I + LS L++      V    T  G+ I I     
Sbjct: 91  PPAAERQRIELLRREKESMTSIARDILNVLSPLISSG---KVRVTQTSRGVSIEI---NA 144

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292
           + +F    +    E+   L  I +VL+  T  I I GHTD  P  N     NW LS  RA
Sbjct: 145 SVLFAPGEASLTNESGAALSAIAQVLSQDTHAIQIEGHTDNLPIGNATFPSNWELSSVRA 204

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            S  ++   +G++E+R++ + G   ++   ++D       NRR+++L+ 
Sbjct: 205 SSVVRLFSNNGIAENRLTAV-GHGSNKPVGSNDTPEGRVRNRRVEVLIL 252



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           + +   DD   +   W I YADF+T+L AFF+VM+ I++ ++   + +    N  G    
Sbjct: 13  RSRKHFDDDAPSHDRWLISYADFITLLFAFFVVMYAISSVNNGKYRVLS---NSLGAAFG 69

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           +A   I                           ++       +    +R    +      
Sbjct: 70  SAPIRI----------------------APPVPIEQPTVLPGRPPAAERQRIELLRREKE 107

Query: 138 QQSEHCKNSLTRDSEK-GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             +   ++ L   S        + T   + ++ E N  +     E  L  +    L  +A
Sbjct: 108 SMTSIARDILNVLSPLISSGKVRVTQTSRGVSIEINASVLFAPGEASLTNESGAALSAIA 167

Query: 197 KKISSTLSGLVADNIVKGVLF 217
           + +S     +  +     +  
Sbjct: 168 QVLSQDTHAIQIEGHTDNLPI 188


>gi|16080024|ref|NP_390850.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310916|ref|ZP_03592763.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315243|ref|ZP_03597048.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320160|ref|ZP_03601454.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324441|ref|ZP_03605735.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|732300|sp|P39064|YTXE_BACSU RecName: Full=Uncharacterized protein YtxE
 gi|348049|gb|AAA68283.1| putative [Bacillus subtilis]
 gi|2293223|gb|AAC00301.1| YtxE [Bacillus subtilis]
 gi|2635456|emb|CAB14950.1| putative flagellar motor apparatus component [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291485404|dbj|BAI86479.1| flagellar motor protein MotS [Bacillus subtilis subsp. natto
           BEST195]
          Length = 242

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           DL K      SI KE N   P  +  ++K  +    K+ +D   ++   ++  + DN +K
Sbjct: 49  DLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLK 108

Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +  +    G+++ +   +   +FD   +  L     +L +I  +L      I + GHT
Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328
           D+          NW LS  RA    Q    K  +   R   + G+A  +      ++   
Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224

Query: 329 SANRRIDILVEDRQ 342
             NRR++I+++  +
Sbjct: 225 KENRRVEIVIKKSK 238



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++        +  SW + + D +T+++ FF++++ ++  D    KA        G  L  
Sbjct: 10  RRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQP 69

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
               I  +   P  S   K +   D+ + K +  +K      +   +R E  +
Sbjct: 70  DQTSIEKKNTSP--SDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120


>gi|78221681|ref|YP_383428.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78192936|gb|ABB30703.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 267

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 6/201 (2%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +  + S     +  STD+        +      S+ + +  + +   +D     ++  + 
Sbjct: 59  TTIQGSAAKPVVIDSTDMRIIPTITPDLINKGRSQGQKMGGRARAEEKDFRAIKAAMEAY 118

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           LV       V    T+ G+++S+   +    FD  S+I       +L K+ E LA  +  
Sbjct: 119 LVKQGAQAKVSVGITQRGLVVSL---KEAGFFDSGSAIVRESAYPLLAKVAESLAGYSNA 175

Query: 266 ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
           + + GHTD  P  + +   NW LS  RA +    L KS   +      +GF  +R     
Sbjct: 176 VRVEGHTDTMPISSPLFPSNWELSTARATNIVHFLTKSYDFQPSAISAAGFGEYRPIADN 235

Query: 323 ASDPMNSANRRIDILVEDRQG 343
           A+    S NRR+DI++   +G
Sbjct: 236 ATAEGRSKNRRVDIVLLSGEG 256


>gi|15895120|ref|NP_348469.1| flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824]
 gi|15024821|gb|AAK79809.1|AE007693_7 Flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824]
 gi|325509259|gb|ADZ20895.1| Flagellar motor protein MotB [Clostridium acetobutylicum EA 2018]
          Length = 254

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 10/202 (4%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
               +     GK +   +     +        P  ++ +    K +   QD+  +I   +
Sbjct: 50  SQEFSAIFSSGKGVLVESGTGNGVVSSMKESTPSNAQSESNNSKIE---QDMMNEIKKNI 106

Query: 204 SGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              VA+N     +  + T  G+ ISI D     +F    S  L     +L +I +++   
Sbjct: 107 DQKVAENGYTDKIKSKITEEGLAISIQDI---ILFRSGDSTVLANIQPMLIEISKMIHSL 163

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD  P        NW LS  RA +  + ++ SG  +++   I  +  +  +
Sbjct: 164 DNNIKVTGHTDNIPIATETFHSNWELSASRALNVMKFMVTSGGVDEKRFSIQAYGEYSPE 223

Query: 322 --IASDPMNSANRRIDILVEDR 341
              +++   + NRR++I +  +
Sbjct: 224 ETNSTEQGRARNRRVEIFILRK 245



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 25/186 (13%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD +T+L+A F+VM+ ++  D+   + + Q F+     + ++ KG+  E      
Sbjct: 17  WLIPYADMLTLLLALFIVMFAMSKVDNKKLQKMSQEFSA----IFSSGKGVLVES----- 67

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
            + N +  S+ E    N+               + E+N   +     +E  KN   + +E
Sbjct: 68  GTGNGVVSSMKESTPSNA---------------QSESNNSKIEQDMMNEIKKNIDQKVAE 112

Query: 153 KG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
            G  D  KS   E+ +       +   S +  +    +  L +++K I S  + +     
Sbjct: 113 NGYTDKIKSKITEEGLAISIQDIILFRSGDSTVLANIQPMLIEISKMIHSLDNNIKVTGH 172

Query: 212 VKGVLF 217
              +  
Sbjct: 173 TDNIPI 178


>gi|115360213|ref|YP_777351.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115285501|gb|ABI91017.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 228

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  + L+ L A      +       GI I I       +F+   +  LP+   VL +I 
Sbjct: 85  ERAPAWLTSLDALKTNGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSEIA 141

Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L+ H+T  I + GHTD++P  N     NW LS  RA S  + L + GV+  R++ I G
Sbjct: 142 RALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAGSVVRYLAERGVAPHRLAAI-G 200

Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338
            A  +  +A D  P  + NRR+ I V
Sbjct: 201 RADTQPLVAGDDAPARARNRRVTIFV 226



 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
              G W I YAD +T LM  FL ++++         A++  +    ++   AS  +   
Sbjct: 24 GTQSGRWLISYADLITTLMVLFLALYVLQLA---KYNALDARYQTLARHDGGASSVMAAA 80

Query: 87 QNPPERSS 94
             PER+ 
Sbjct: 81 PATPERAP 88


>gi|148265913|ref|YP_001232619.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399413|gb|ABQ28046.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 287

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           ++L + I   EN           L   +++ +Q  +K     L  + ++     V     
Sbjct: 103 SELRQKIADLENENAKLKEDIASLKKAKEEEVQKTSKTYEDLLEKMKSEISQGQVTISEL 162

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           +  + ++++D     +FD   +   P+ +VVLQK+ ++L +  +  I I GHTD      
Sbjct: 163 KGKLTVNMVD---AVLFDSGKAEVKPDGLVVLQKVIDILKNIKDKSIRIEGHTDNVSIVG 219

Query: 280 I----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                   NW LS  RA +  + L + G+    ++ I+ +   +    +D     + NRR
Sbjct: 220 ALAKKYPTNWELSAARAINVTRYLQQQGIDPTNLAAIA-YGEFKPVAGNDTPEGKAKNRR 278

Query: 334 IDILVEDRQ 342
           I+I++  ++
Sbjct: 279 IEIILVPKE 287


>gi|302342669|ref|YP_003807198.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639282|gb|ADK84604.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 244

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 7/149 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   +  +     +  V  E    G  + I+  +   +F+  SS   P+ + VL+ I +V
Sbjct: 98  IMQDIREVTDQKNLDDV-VEVIDQGDKV-ILRVKGQLLFNTGSSDINPQALGVLKAIADV 155

Query: 259 LAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +  +    + ++GHTD+ P  ++    NW LS  RA +  + L++ GVS  R++  +G+A
Sbjct: 156 VDRNPGWRLDVKGHTDSRPISSVKFASNWELSSLRATAVLRYLIEQGVSPSRLTA-TGYA 214

Query: 317 HHRLKIAS--DPMNSANRRIDILVEDRQG 343
             +  +    +   + NRR++ ++E ++G
Sbjct: 215 DTQRLVPDSSEENMARNRRVEFVLEKQKG 243



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
          DD       W + YAD +T+L+ FF++M  +   D +  + I           +     I
Sbjct: 15 DDAGEEGREWLVTYADMVTLLLTFFVMMLSLARLDTERFEQIVTSIQYSLGASVAPGGRI 74


>gi|291286231|ref|YP_003503047.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883391|gb|ADD67091.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 247

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISI 228
           +E        ++ +  +   + ++ + +K++ +L   V    + + V    T+ G+ + I
Sbjct: 60  KEGNKTEMTQEDIMSRLSFVQNVRSVQRKVTKSLREYVKSAQMSQVVTIAETKKGVSVRI 119

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRL 287
           +D+    +F   S+  L +   +L K+  V+  S   I + GHTD  P        NW L
Sbjct: 120 LDKM---LFKSGSAEILDQGKPLLDKLAAVIEESPFNIMVEGHTDDIPISTALYPSNWEL 176

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           S  RA S  +  M   VS  R+S  SG+A +     +        NRR+++
Sbjct: 177 STARAVSVVKYFMSKDVSAQRLSA-SGYAEYHPVTPNISAASREKNRRVEV 226



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   ++       W   ++D  T+LM FF+++  + + D    K            L   
Sbjct: 3   KKKCEECKPGAPMWMSTFSDMATLLMTFFILLLSMASMDKRKIKVALGSLQGSLGVLKEG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
           +K    +++   R S  +   S+   +TK+  + 
Sbjct: 63  NKTEMTQEDIMSRLSFVQNVRSVQRKVTKSLREY 96


>gi|254491758|ref|ZP_05104937.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224463236|gb|EEF79506.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 306

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             I S N+ K     +      S+  +S++          +GK   +  + EK+  K + 
Sbjct: 35  YSISSVNEGKYRVLSDTLEAVFSDPVRSKNPIQIGEISRGEGKLTAEPGEPEKADYKIDL 94

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             +P   +         + +++L K++S  L+ ++     + V+ +     + + I   +
Sbjct: 95  PEIPH--RPPPATENDIRTIKELTKQLSGALADMIE---TEDVIIKQGEDWLELEI---K 146

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291
           +  +F+   +      + V+ KI ++L  S   I + G TD +P   +    NW LS  R
Sbjct: 147 SRVLFESGEARLERAAVPVIGKIADILQTSANPIQVEGFTDNNPINTSRFPSNWELSAAR 206

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           A S   +L + G+  DR+S I G+  ++     A++     NRR+ ++V 
Sbjct: 207 AASVVHLLDRYGIQPDRMSAI-GYGEYKPIADNATEEGRQKNRRVVLVVL 255


>gi|326203246|ref|ZP_08193111.1| OmpA/MotB domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986504|gb|EGD47335.1| OmpA/MotB domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 16/208 (7%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           QQ     +S   + E+   +   +     I+       P +  +        ++++ L +
Sbjct: 44  QQLSQSLSSAFGNGERPSVVQGGSSGNSLIDFPATMPSPVIPSKI-----EDQQMEALQE 98

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +IS  +    ++ +   V       GI+++I       +F   S+I  P     + KIG+
Sbjct: 99  EISGLVD---SEGLKGNVSVTMQERGIVVTI---NEKILFKSGSAIIEPNDQDTVIKIGK 152

Query: 258 -VLAHSTEV-ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +L+      I + GHTD  P ++     NW LS  RA +  ++L+  G    ++     
Sbjct: 153 DILSKIPNKHIRVEGHTDNIPMKSALYPSNWELSAARAINVLKLLVDKGGINPKMIAPVP 212

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340
           +  +   + +  D   + NRR+DI++  
Sbjct: 213 YGEYSPLVPNTTDINRAKNRRVDIVILR 240


>gi|238927470|ref|ZP_04659230.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531]
 gi|238884752|gb|EEQ48390.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531]
          Length = 308

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           + +  S            +      MK  + L +  KK+   +     +N+   V  E T
Sbjct: 67  SGMGPSTAPSPPTMTNGANTADAAYMKENQDLSEAQKKLDQYIK---DNNLQDQVSTELT 123

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G+++ +   +   +F   S++   +   ++  I  VLA   E ++I GHTD  P    
Sbjct: 124 EEGLMVRL---KEKALFSSGSAVLQGDAEKIVPVIAGVLASLPERVTISGHTDNVPISTA 180

Query: 281 AR-DNWRLSLDRAYSAYQ--VLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
               NW LS  RA S  +  + ++  ++  R S + G++ +R   ++D     + NRR++
Sbjct: 181 QYPSNWELSSARAVSLMRGVMAVQPSLNPARFSAL-GYSEYRPIASNDTEEGRAQNRRVE 239

Query: 336 ILV 338
           + +
Sbjct: 240 VFI 242



 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK           +W + Y+D MT+L+A F+ ++ ++ TD    +A+ Q F        
Sbjct: 3   RKKRGKPHEEELNEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                 F    P    S   +    +        + +  S  QKK  Q +++N      S
Sbjct: 60  MGGPSFFSGMGPSTAPSPPTMTNGANTADAAYMKENQDLSEAQKKLDQYIKDNNLQDQVS 119


>gi|254519411|ref|ZP_05131467.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA]
 gi|226913160|gb|EEH98361.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA]
          Length = 246

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 11/208 (5%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            +E  K+     +         + +E ++   E   +   +++ I   +     + + K 
Sbjct: 42  DAEKTKSISNAFTSMMSGQNGDSIMEYNMYNGEVPLIGGETEDNIEGGESLTEQEKMYKN 101

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   ++    +N+   V     + G++I + D     +F+ SSS    E+  VL KI  +
Sbjct: 102 VKEFVNE---NNLGSVVDIIDNKRGVIIQLRDN---VLFETSSSDLREESKEVLNKINSL 155

Query: 259 LAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           +A     I + GHTD  P   +    NW LS DRA +  +  ++  G    R S  +G+ 
Sbjct: 156 IASIDNQILVEGHTDNRPINTSRFPSNWELSADRAVNVVKYFIEVMGQDPSRFSA-AGYG 214

Query: 317 HHRLKIASDPMN--SANRRIDILVEDRQ 342
            +     +D     + NRR+DIL+   +
Sbjct: 215 EYHPVAPNDTYENMAKNRRVDILIVTTE 242


>gi|317129962|ref|YP_004096244.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474910|gb|ADU31513.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 258

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 8/181 (4%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E    K++ +       E  L  K+++  Q L   +   L  L A+N+ + +      
Sbjct: 71  PAEDRDTKDDPFDNEVDPFENFLDSKKEENNQQLDDLLVEVLDFLEANNLYESISASRDD 130

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
            G+++ + +Q    +F+ + +  + +    L K+G ++      I + GHTD+ P     
Sbjct: 131 RGVVLVLQEQ---VLFESARAELISDATAFLDKVGTLIESVPNPIMVEGHTDSRPIETFQ 187

Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              NW LS  RA S  + L+ +  + + R   + G+   R    +  +     NRR+ I+
Sbjct: 188 FPSNWELSGARASSVIRYLVDNHDLDQSRFVSV-GYGDTRPIAPNTTNENLQKNRRVVIV 246

Query: 338 V 338
           +
Sbjct: 247 I 247



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +T      W + ++D MT+++ FF++++ ++  D    +A+ + F    + L
Sbjct: 1   MIRRRRQGNTEKGAPKWMVTFSDLMTLILVFFVLLFSMSVVDGQKFQAVAESFQ--DRAL 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
                 +    NP E           +    +N +D K    NQ+
Sbjct: 59  FEFYPSLIPFDNPAEDRDTKDDPFDNEVDPFENFLDSKKEENNQQ 103


>gi|116620375|ref|YP_822531.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223537|gb|ABJ82246.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           R   L D+ +K+   L  +     +   V F  T  G+ I +++      F   S  P  
Sbjct: 77  RTDGLLDIRRKLEEALRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFVSGSPAPTR 136

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKS 302
               +L+ +   +      + I GHTDA PFRN        NW L+ DRA +A ++L   
Sbjct: 137 AGEELLRVLAREIGRLPNSLVIEGHTDAKPFRNARPAEGYSNWELAADRANAARRLLHLF 196

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           GV  +++ ++ GFA  +     D  ++ NRR+ ++V+
Sbjct: 197 GVRPEQVVEVRGFADQKPFNERDRFDARNRRVSVVVK 233



 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
            +        +  G+WK+ YADF+T LMA F+V+W++N++    K +I  YF        
Sbjct: 3   VRFRPAPGHRSGSGAWKVAYADFVTALMALFIVLWLMNSSTK-VKSSISGYFRDPRGFTR 61

Query: 78  TASKGIFDEQNPPERSSQNKIDL 100
           T   G  +        +   +D+
Sbjct: 62  TLGAGPANSGEGLSLRTDGLLDI 84


>gi|322806981|emb|CBZ04551.1| flagellar motor rotation protein MotB [Clostridium botulinum H04402
           065]
          Length = 247

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPARFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241


>gi|88704268|ref|ZP_01101982.1| flagellar motor protein MotB [Congregibacter litoralis KT71]
 gi|88701319|gb|EAQ98424.1| flagellar motor protein MotB [Congregibacter litoralis KT71]
          Length = 272

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 111/328 (33%), Gaps = 70/328 (21%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   +   N+   W + YADF+T+L AFF+VM+  +A +    + +           
Sbjct: 1   MARRKPPESVDNH-ERWLVSYADFITLLFAFFVVMYSTSAVNVGNFRVLSDSI-----VR 54

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G+  + + P+        + +                                  
Sbjct: 55  AFGLPGVSYDPSRPDGDGTQSSRIGLP--------------------------------- 81

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                        D+E+            S +   N  L  +  E+ +A           
Sbjct: 82  -----------QLDAERDAVRVPLQAAANSASTNPNAALGDIQAEEEIAG---------- 120

Query: 197 KKISSTLSGLVADNIV-KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             + + L   V D +    +        + I I       +F   S   L  +I +LQ++
Sbjct: 121 --VETALQSAVGDLVAPDRLAITGNDKWLEIKI---PARMLFPSGSRSLLASSIPMLQRL 175

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            E L      + ++GHTD  P RN     NW LS  RA +  +V    G+   R+S + G
Sbjct: 176 AETLGGLPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAAVARVFEDEGIDPSRLSAV-G 234

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340
           F  +R    +  +   + NRR+ ILV  
Sbjct: 235 FGPNRPITDNLTEESRAENRRVVILVRS 262


>gi|170700356|ref|ZP_02891367.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170134743|gb|EDT03060.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 228

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  + L+ L A      +       GI I I       +F    +  LP+   VL +I 
Sbjct: 85  ERAPAWLTSLDALKTNGRISLVRASHGIEIGI---DAKILFSVGDARLLPDATPVLSQIA 141

Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             L+ H+T  I + GHTD+ P  N     NW LS  RA S  + L   GV+  R++ I G
Sbjct: 142 RALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI-G 200

Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338
            A  +  +A D  P  + NRR+ I V
Sbjct: 201 RADTQPLVAGDDAPARARNRRVTIFV 226



 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
              G W I YAD +T LM  FL ++++ 
Sbjct: 24 GAQSGRWLISYADLITTLMVLFLALYVLQ 52


>gi|153940977|ref|YP_001391952.1| chemotaxis motB protein [Clostridium botulinum F str. Langeland]
 gi|152936873|gb|ABS42371.1| chemotaxis motB protein [Clostridium botulinum F str. Langeland]
 gi|295319971|gb|ADG00349.1| chemotaxis motB protein [Clostridium botulinum F str. 230613]
          Length = 247

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241


>gi|148380609|ref|YP_001255150.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502]
 gi|153936730|ref|YP_001388364.1| chemotaxis motB protein [Clostridium botulinum A str. Hall]
 gi|148290093|emb|CAL84212.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152932644|gb|ABS38143.1| chemotaxis protein MotB [Clostridium botulinum A str. Hall]
          Length = 247

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241


>gi|167463460|ref|ZP_02328549.1| flagellar motor protein MotB [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 258

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 14/204 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K S +  S       ++   + ++ +  +              +++K LQD+ K + + +
Sbjct: 62  KESNSILSMNSGVSGQNMPPKSTVGEITDKKTKERQAAAADMERKEKELQDILKTVQAYI 121

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                +++   +    +  G+ +++ D     +FD   +   PE   VL K+  +     
Sbjct: 122 EE---NHLEAQIAVGNSERGVSVTLKDL---FLFDLGKAELKPEAYPVLNKLASLFPTLD 175

Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG---VSEDRISKISGFAHH 318
             ISI GHTD  P R  +   DNW LS  R+ S  +         +S+ +    +G+A  
Sbjct: 176 TKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTTKADPKISDSKFMS-TGYADT 234

Query: 319 RLKIASDPM--NSANRRIDILVED 340
                +D M   + NRR++I++  
Sbjct: 235 IPVAPNDSMENRAKNRRVEIVILR 258



 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---PFGKN 75
           ++    +   N   W + YAD +T+L+AFF++M+ ++  D +  + + Q  +       +
Sbjct: 7   RRSKKPEEHVNHERWLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNS 66

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
           +++ + G+  +  PP+ +     D    E 
Sbjct: 67  ILSMNSGVSGQNMPPKSTVGEITDKKTKER 96


>gi|311067881|ref|YP_003972804.1| flagellar motor protein MotB [Bacillus atrophaeus 1942]
 gi|310868398|gb|ADP31873.1| flagellar motor protein MotB [Bacillus atrophaeus 1942]
          Length = 262

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214
           D    T  E      +        K++      K   Q+  + +   +   + D  ++  
Sbjct: 66  DYSSVTPPESEQQGIDQLEDEKKKKKEKQEAADKTADQEELENVEKQVKQFIKDKKLENQ 125

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+LI+I D      FD   +    + I + ++I ++L  +    I I GHTD
Sbjct: 126 LETKLTDEGLLITIKDS---IFFDSGKATIREQDIPLAEEISDLLVLNPPRNIIISGHTD 182

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
             P +N     NW LS+ RA +   +L+++   + ++    GF  ++    +D     S 
Sbjct: 183 NMPIKNSQFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGFGEYKPVATNDTAEGRSK 242

Query: 331 NRRIDILVEDR 341
           NRR+++L+  R
Sbjct: 243 NRRVEVLILPR 253



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 17  IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           + +K        +   SW + YAD +T+L+A F+V++  ++ D    K + + FN     
Sbjct: 1   MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLFASSSVDAAKFKMLSKSFN----E 56

Query: 76  LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           + T   G+ D  +  P  S Q  ID   DE   K         T  +++ + +E  +   
Sbjct: 57  VFTGGTGVMDYSSVTPPESEQQGIDQLEDEKKKKKEKQEAADKTADQEELENVEKQVKQF 116

Query: 135 SNSQQSE 141
              ++ E
Sbjct: 117 IKDKKLE 123


>gi|260886728|ref|ZP_05897991.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185]
 gi|330839448|ref|YP_004414028.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863580|gb|EEX78080.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185]
 gi|329747212|gb|AEC00569.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185]
          Length = 303

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 12/213 (5%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           ++ +S +  S+  + +    +                       +    K     ++  K
Sbjct: 36  LYAMSATDSSKMAQMAQAFTAAFNTGGPSFFSQMGPSESRHAERVATEDKGNSAYIQEAK 95

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L+++ K++ + +     + +   +    T  G++I I   +   +F   S+  + E   
Sbjct: 96  ALEEVQKELDNYIKQ---NGLQGELNTTMTDDGLMIRI---KEKALFPSGSAELVGEAQK 149

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG--VSED 307
           +   +  +LA   E + I GHTD  P        NW LS  RA +  + L  S   ++  
Sbjct: 150 IGPVVAGLLAKIPERVVISGHTDNVPIATARYPSNWELSSQRALNFMKFLFASNTSLNPA 209

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           R S I G++ +R      +D   S NRR+++L+
Sbjct: 210 RFSSI-GYSEYRPIADNKTDEGRSQNRRVEVLI 241



 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          +KK           +W + Y+D MT+L+A F+ ++ ++ATD      + Q F        
Sbjct: 3  RKKRHAPHEEEAGEAWLLPYSDLMTLLLATFIALYAMSATDSSKMAQMAQAFTA---AFN 59

Query: 78 TASKGIFDEQNPPE 91
          T     F +  P E
Sbjct: 60 TGGPSFFSQMGPSE 73


>gi|302875899|ref|YP_003844532.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307689333|ref|ZP_07631779.1| chemotaxis MotB protein [Clostridium cellulovorans 743B]
 gi|302578756|gb|ADL52768.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 245

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 11/153 (7%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++ +L  K+   ++    +     V+ E  + G+ ISI D     +F+   +  L E  
Sbjct: 98  NKMHELKAKLDQEIA---REGYSDKVITELNKDGLYISIQD---VILFNSGDANVLKEVS 151

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSG-VSED 307
            +L +I  ++      I I GHTD  P   +  R NW LS  RA +    ++ +G ++ +
Sbjct: 152 PLLTEISHLIRDIDNRIRIVGHTDNVPISTVKFRSNWDLSAMRAINVMNFMVDTGKLNPE 211

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           ++  I  +  +  +  +      + NRR++I +
Sbjct: 212 KV-SIQAYGEYMPRFDNSTAENRARNRRVEIFI 243



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          K       +   +W I YAD +T+L+A F+VM+ ++  D+     + Q  N     +   
Sbjct: 3  KKKQHHEEHVDETWLIPYADMLTLLLALFIVMFAMSKLDNQKVSQVSQQLNA----IFAG 58

Query: 80 SKGIF 84
            GI 
Sbjct: 59 GSGII 63


>gi|228964710|ref|ZP_04125817.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794960|gb|EEM42459.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 223

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 13/219 (5%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G      ++     ++  L  +        S     +  K L K +D  +   K     +
Sbjct: 5   GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 64

Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           P +S EK    +  KKR+ +L KK+ +     V +N +  V      TG+ + I+D    
Sbjct: 65  PDISHEKNDEKIISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292
            +FD   +   PE   ++ ++          I + GHTD+ P  N     NW LS  R A
Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
              + ++    V + R++ + G+A  +  + +D  +  N
Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPND--SPQN 213


>gi|297583574|ref|YP_003699354.1| OmpA/MotB domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142031|gb|ADH98788.1| OmpA/MotB domain protein [Bacillus selenitireducens MLS10]
          Length = 256

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
              + D +   +  +    P  S  ++  ++  ++L DL ++++  +     +++ + + 
Sbjct: 67  ENPAEDRDVRDDPFDADVDPFESHMEMDEVEMSEQLDDLLEEVNEFIE---DNDLTENIS 123

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G+++ + +Q    +F+ + +  LP+    L+K+G ++     ++ + GHTD+ P
Sbjct: 124 ATRDDRGVVLVLQEQ---ALFETARAEILPQAEPFLEKVGTLVTTVPNMVKVEGHTDSRP 180

Query: 277 FRNIA-RDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
              +    NW LS  RA S    +L    V E R   + G+   R    +   +    NR
Sbjct: 181 INTVQFPSNWELSGARASSVIRFILSNFDVDERRFLAV-GYGETRPVAPNTTPDNLQQNR 239

Query: 333 RIDILVED 340
           R+ I++ D
Sbjct: 240 RVVIVISD 247



 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                 P     W + ++D MT+++ FF++++ ++  D +  +AI + F    + +    
Sbjct: 3   RKKKQGPKGAPKWMVTFSDLMTLILVFFILLFSMSVVDANRFEAIAESFQ--ERAIFDFY 60

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             +   +NP E           D    ++ +++     +++      E N F   N 
Sbjct: 61  PSLIPFENPAEDRDVRDDPFDADVDPFESHMEMDEVEMSEQLDDLLEEVNEFIEDND 117


>gi|296332050|ref|ZP_06874514.1| flagellar motor protein MotS [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675555|ref|YP_003867227.1| putative flagellar motor apparatus component [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150821|gb|EFG91706.1| flagellar motor protein MotS [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413799|gb|ADM38918.1| putative flagellar motor apparatus component [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 236

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           DL K      SI KE     P  +  ++K  +    K+ +D   ++   ++  + DN +K
Sbjct: 49  DLQKFKAAVDSIQKEGGGLQPDQTSIEKKNTSPADAKKQEDQQDQLLKKVNTYIKDNHLK 108

Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +  +    G+++ +   +   +FD   +  L     +L +I  +L      I + GHT
Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDSGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328
           D+          NW LS  RA    Q    K  +   R   + G+A  +      ++   
Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224

Query: 329 SANRRIDILVE 339
             NRR++I+++
Sbjct: 225 KENRRVEIVIK 235



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           ++       ++  SW + ++D +T+++ FF++++ ++  D    KA        G  L  
Sbjct: 10  RRNGSGKNSHSSSSWMVTFSDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGGGLQP 69

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
               I  +   P  +   K +   D+ + K +  +K      +   +R E  +
Sbjct: 70  DQTSIEKKNTSP--ADAKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120


>gi|226950064|ref|YP_002805155.1| chemotaxis motB protein [Clostridium botulinum A2 str. Kyoto]
 gi|226842943|gb|ACO85609.1| chemotaxis motB protein [Clostridium botulinum A2 str. Kyoto]
          Length = 247

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI +++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINDLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   S NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241


>gi|322421651|ref|YP_004200874.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320128038|gb|ADW15598.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 254

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNI 211
           G     +      I+      +P + K      + + R   QD     +S  + L+    
Sbjct: 58  GYSTTSAGAKPTVIDSGAMSIVPSIHKMTQAPKRGRSRGSEQDFRATKASIEAYLMKMGA 117

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              V    T+ G+++S+   +    FD  S+     +  +L  +   LA  +  + + GH
Sbjct: 118 QSKVSISVTQRGLVVSL---KEAGFFDSGSATLKQSSFSLLNDVVTSLASYSNSVRVEGH 174

Query: 272 TDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPM 327
           TD  P  +     NW LS  RA +  Q L K       RIS  +G+  +R    +  +  
Sbjct: 175 TDNIPISSASFPSNWELSTARATNVLQYLTKQEDFDPARISA-AGYGEYRPVADNGDEEG 233

Query: 328 NSANRRIDILVEDRQ 342
              NRR+DI++   Q
Sbjct: 234 RGKNRRVDIVLLSEQ 248



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + K+ A  +   N   W + YADF+T+L A F+ ++ ++ TD    + +           
Sbjct: 1   MAKRKAQHEKEPNHERWLVSYADFITLLFAVFVTLYAMSQTDKKKAEEVLSSMR------ 54

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
              S G        + +  +   +SI   I K +   K G +   +Q  R          
Sbjct: 55  --ESFGYSTTSAGAKPTVIDSGAMSIVPSIHKMTQAPKRGRSRGSEQDFRATKASIEAYL 112

Query: 137 SQQSEHCKNSLT 148
            +     K S++
Sbjct: 113 MKMGAQSKVSIS 124


>gi|39996116|ref|NP_952067.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA]
 gi|39982881|gb|AAR34340.1| chemotaxis MotB protein, putative [Geobacter sulfurreducens PCA]
          Length = 289

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-TDLEKSINKEENYFLPPLSKEKIL 184
           + E         + +   +        K   L ++  +L + +++ E       +     
Sbjct: 67  KDEAAGLAQDKEKLTADNRELQQVLQAKSDSLSQNIVELRQKVSQLEAENARLKADIAST 126

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
              +++++++++K     L  +  +     V     +  + ++++D     +FD   +  
Sbjct: 127 QKAKEEQVREVSKTYEDLLDKMKGEIAQGQVTISELKGKLTVNMVD---AILFDSGKAEV 183

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVL 299
            P  + +LQK+ E+L    +  I I GHTD              NW LS  RA +  + L
Sbjct: 184 KPAGMDLLQKVVEILKDVKDKAIRIEGHTDNVQIVGNLAKRFPTNWELSSARAINVTRFL 243

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
              G+    +S ++ +  +     +D     + NRRI+I++  +  
Sbjct: 244 QSRGIDPAVLSAVA-YGEYHPVAPNDTDEGKAKNRRIEIILVPKDA 288


>gi|253577343|ref|ZP_04854660.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843243|gb|EES71274.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 269

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 91/218 (41%), Gaps = 12/218 (5%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           + + +   S+  +      T   ++   +  +      I   ++     ++K+  L  + 
Sbjct: 44  DAMKFQEMSEAFKSVLTGGTSVLDQNAMISNNKTSLSEIETPKSTQDGLMTKKNELKRQE 103

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ L+ L K++ + +     + +   +  +  ++ ++I+I D     +F    ++  PE 
Sbjct: 104 QQNLEALKKQLDTYIKE---NGLTDDLETKLNQSQLMITISD---KALFASGEAVVKPEA 157

Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQV-LMKSGVS 305
             + + I  +L       + + GHTD  P        NW LS  RA +  ++ L+ + + 
Sbjct: 158 RQLAKAISNMLQQFPDYEVIVSGHTDNVPISTYEFPSNWDLSSVRALNFMKILLLNTNLD 217

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             + S I G+  +    ++D     + NRR+++ +  +
Sbjct: 218 PKKFSAI-GYGEYHPVASNDTAAGRAQNRRVEVSIIRK 254



 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           K K   D   +   SW + Y+D MT+++A F+V++ ++  D    + + + F     +++
Sbjct: 4   KNKKHQDHEEHADESWLLPYSDLMTLMLALFIVLYGMSTVDAMKFQEMSEAFK----SVL 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T    + D+      +  +  ++   +         + G   +K + +R E         
Sbjct: 60  TGGTSVLDQNAMISNNKTSLSEIETPKST-------QDGLMTKKNELKRQEQQNLEALKK 112

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q   + K      ++  +     + L  +I+ +  +               K   + LAK
Sbjct: 113 QLDTYIKE--NGLTDDLETKLNQSQLMITISDKALFASGEAVV--------KPEARQLAK 162

Query: 198 KISSTLSGLVADNIVKGVLFETTR 221
            IS+ L       ++     +   
Sbjct: 163 AISNMLQQFPDYEVIVSGHTDNVP 186


>gi|92113628|ref|YP_573556.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91796718|gb|ABE58857.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 283

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           P  ++  +   K   R     +++ +TL   +      GV+   +  G+   I    N  
Sbjct: 118 PAPAEALVENAKAAVREPAGVRRLPNTLKPFI-----DGVVVTQSAQGLNFRI---ENHL 169

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYS 294
           +F  S +    E   VL+++ + L      I+I GHTD+ P   +    NW LS  RA +
Sbjct: 170 LFSSSQADLTDEGRAVLRQLLDSLRAFDGEITIEGHTDSRPIATDRFPSNWELSTARATA 229

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
             + L+  G+  + +  + G+A  R   ++D     +ANRR+++++ + +
Sbjct: 230 VLRFLVGEGLDSEALRAV-GYADTRPLQSNDSAEGRAANRRVELVLHEPE 278


>gi|322383007|ref|ZP_08056837.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153030|gb|EFX45490.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 254

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 14/204 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K S +  S       ++   + ++ +  +              +++K LQD+ K + + +
Sbjct: 58  KESNSILSMNSGVSGQNMPPKSTVGEITDKKTKERQAAAADMERKEKELQDILKTVQAYI 117

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                +++   +    +  G+ +++ D     +FD   +   PE   VL K+  +     
Sbjct: 118 EE---NHLEAQIAVGNSERGVSVTLKDL---FLFDLGKAELKPEAYPVLNKLASLFPTLD 171

Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG---VSEDRISKISGFAHH 318
             ISI GHTD  P R  +   DNW LS  R+ S  +         +S+ +    +G+A  
Sbjct: 172 TKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTTKADPKISDSKFMS-TGYADT 230

Query: 319 RLKIASDPM--NSANRRIDILVED 340
                +D M   + NRR++I++  
Sbjct: 231 IPVAPNDSMENRAKNRRVEIVILR 254



 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---PFG 73
           + ++    +   N   W + YAD +T+L+AFF++M+ ++  D +  + + Q  +      
Sbjct: 1   MARRSKKPEEHVNHERWLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKES 60

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
            ++++ + G+  +  PP+ +     D    E 
Sbjct: 61  NSILSMNSGVSGQNMPPKSTVGEITDKKTKER 92


>gi|56963749|ref|YP_175480.1| motility protein B [Bacillus clausii KSM-K16]
 gi|56909992|dbj|BAD64519.1| motility protein B [Bacillus clausii KSM-K16]
          Length = 252

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 113/327 (34%), Gaps = 88/327 (26%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++    D   +   +W + YAD +T+L+A F+V++ +   D      +         +  
Sbjct: 5   RRPRRHDSNTHVDETWLLPYADMLTLLVALFIVLFAMGQIDQAKYDQL-----KIVLSET 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              +GI D QN                                                 
Sbjct: 60  LGGQGILDNQN------------------------------------------------- 70

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              E  + +         +L +++ LE+S  ++    L    +EK LA + +  L     
Sbjct: 71  ALDEVDEQARNTLESDPSELSEASKLERSELEQLQARLNGYIEEKQLADRLQTELGA--- 127

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                                   +G+LI+I D     +F   S+    ++I +++++  
Sbjct: 128 ------------------------SGLLITIND---GILFASGSAELKSDSIELIEQLSA 160

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +LA      I I GHTD  P  N     NW LS  RAY+  ++  +    E      +G+
Sbjct: 161 MLASDPPRYIQISGHTDNVPMGNNEFDSNWELSSARAYNVMKLFFEYDHFEPAQLSFAGY 220

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
             +    +++      ANRR+++LV  
Sbjct: 221 GEYHPITSNETAEGRQANRRVEVLVLP 247


>gi|168180924|ref|ZP_02615588.1| chemotaxis motB protein [Clostridium botulinum NCTC 2916]
 gi|237796091|ref|YP_002863643.1| chemotaxis motB protein [Clostridium botulinum Ba4 str. 657]
 gi|182668356|gb|EDT80335.1| chemotaxis motB protein [Clostridium botulinum NCTC 2916]
 gi|229263486|gb|ACQ54519.1| chemotaxis protein MotB [Clostridium botulinum Ba4 str. 657]
          Length = 247

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   S NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241


>gi|168182734|ref|ZP_02617398.1| chemotaxis motB protein [Clostridium botulinum Bf]
 gi|182674075|gb|EDT86036.1| chemotaxis motB protein [Clostridium botulinum Bf]
          Length = 247

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   S NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241


>gi|170761206|ref|YP_001787972.1| chemotaxis motB protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408195|gb|ACA56606.1| chemotaxis protein MotB [Clostridium botulinum A3 str. Loch Maree]
          Length = 247

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANKAKNRRVNIVIVSKE 241


>gi|326792989|ref|YP_004310810.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427]
 gi|326543753|gb|ADZ85612.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427]
          Length = 240

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q++  K+   L      ++ + V       G+ +S  D     +FD   +         L
Sbjct: 85  QEIQTKLKDYLET---HDLTEQVSLHVEPQGLTLSFDDN---ILFDSGKADIQSAYKKNL 138

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310
            +I ++L   T  + + GHTD  P        NW L+  RA +   + +  G +   ++S
Sbjct: 139 LEICDILKTFTNDVVVEGHTDNLPIHTSQFSSNWELASIRAINVVHLFIDEGKLPASKLS 198

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340
            IS +  +R   ++D     + NRRIDI++  
Sbjct: 199 AIS-YGEYRPIASNDTPEGRAKNRRIDIILLS 229



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                  N   W + Y+D +T+LM FF+VM+ ++  D    + +    +     ++   
Sbjct: 2  AKKKPKKENSERWLLTYSDLITLLMIFFVVMYSMSNVDSKKYEELAGSLSN-SLGILQGG 60

Query: 81 KGIFDEQNPPERSSQ 95
           G+ +       SS 
Sbjct: 61 VGMSNANAAGTDSSI 75


>gi|88812420|ref|ZP_01127670.1| flagellar motor protein [Nitrococcus mobilis Nb-231]
 gi|88790427|gb|EAR21544.1| flagellar motor protein [Nitrococcus mobilis Nb-231]
          Length = 312

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 117/330 (35%), Gaps = 51/330 (15%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLM 77
           K       P     W   +AD  T+L++FF+++   +  D +  K I       FG    
Sbjct: 7   KSGKRRLAPVGAPPWMATFADLSTLLLSFFVLLLSFSEMDVNKYKEIAGSMRMAFGVQRE 66

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             ++      +PP  +S    D S  +        +     +  +  + +   +    + 
Sbjct: 67  DVTR------DPPMGTSFVARDFSPGQPSQSPFAKIAPTPMSTSEGIRPMPPRVTVAPSG 120

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
                           G D   S   + S    E      +  + +   + ++ L ++A+
Sbjct: 121 P--------------GGPDSLLSLSRQPSDAAVEQARSNLIKLQSLFRQEIERGLIEVAQ 166

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                        I   ++      G             F   S+  +   +  ++KIG+
Sbjct: 167 -------------IGAQIVIRVREHGS------------FPSGSAKLIKPFLPAVRKIGQ 201

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGF 315
            +  +   + I GHTD  P  N   R NW LS  RA S  + L     V  +RI+ ++G 
Sbjct: 202 AIRMTEGQVIIAGHTDNVPIHNAQFRSNWDLSAARAISLLRALGAVEAVDANRIT-VAGH 260

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343
           A  R  +++D     + NRR++I++ +  G
Sbjct: 261 ADTRPIVSNDTPRHRARNRRVEIILVNGNG 290


>gi|170756344|ref|YP_001782268.1| chemotaxis motB protein [Clostridium botulinum B1 str. Okra]
 gi|169121556|gb|ACA45392.1| chemotaxis protein MotB [Clostridium botulinum B1 str. Okra]
          Length = 247

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   L  +     +D+ K+++  +     +N+   V  +    GI+I + D
Sbjct: 73  KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+   +   P++  ++ KI  ++A     + I GHTD  P +N     NW LS 
Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANKAKNRRVNIVIVSKE 241


>gi|149183513|ref|ZP_01861940.1| flagellar motor protein MotB [Bacillus sp. SG-1]
 gi|148848785|gb|EDL63008.1| flagellar motor protein MotB [Bacillus sp. SG-1]
          Length = 253

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L   +K+ +Q+L K        + A+ +      E T  G+L++I D     +F   S++
Sbjct: 93  LEAAKKREMQELKKLQDRVNGYIAANELQTQFATELTSEGLLLTIRDN---VLFQSGSAV 149

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301
              +   + +++  +L   +   + I GHTD  P        NW LS+ RA +  ++++K
Sbjct: 150 VGAKDEGIAKELSGLLEMDTPRSVIISGHTDNVPISTANYESNWELSVMRAVNFMKIILK 209

Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +   + R     GF   +   ++D     + NRR+++L+  R
Sbjct: 210 NQNLDPRWFSAKGFGEFKPMASNDTSEGRAKNRRVEVLILPR 251



 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++       +   SW I YAD +T+L+A F+V++  ++ D    +A+ + FN     + 
Sbjct: 3   RRRKKHHHEEHVDESWLIPYADVLTLLLALFIVLFASSSVDAQKFQAMSKAFN----EIF 58

Query: 78  TASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               G+ +   P PE  + ++        +T + ++       Q+ +  +   N +  +N
Sbjct: 59  VGGTGVMEYPTPVPETDAGDRNKNEEQNSLTVDELEAAKKREMQELKKLQDRVNGYIAAN 118

Query: 137 SQQSEHCKN 145
             Q++    
Sbjct: 119 ELQTQFATE 127


>gi|308173338|ref|YP_003920043.1| motility protein MotB [Bacillus amyloliquefaciens DSM 7]
 gi|307606202|emb|CBI42573.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus amyloliquefaciens DSM 7]
 gi|328911414|gb|AEB63010.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus amyloliquefaciens LL3]
          Length = 267

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 123/332 (37%), Gaps = 79/332 (23%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK    D  +   SW I YAD +T+L+A F+V++ +++ D    + + + FN       
Sbjct: 3   RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58

Query: 78  TASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           T   G+ +  +  PPE        L  D+   K     K     +++   R E       
Sbjct: 59  TGGTGVLEYSSVTPPENEKDGIDQLKKDKDKEKEKEKDKEQKKKEREAADRQE------- 111

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                                                  L  + K+    +K KK    L
Sbjct: 112 ---------------------------------------LEGVQKQVNQFIKNKKLEHQL 132

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             K++                      G+LI+I D   +  FD   ++   E I + ++I
Sbjct: 133 ETKLTK--------------------EGLLITIKD---SIFFDSGQAVIRQEDIPLAKEI 169

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             +L  +    I I GHTD  P +N     NW LS+ RA +   +L ++   + ++    
Sbjct: 170 SNLLVLNPPRNIIISGHTDNVPIKNSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAK 229

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           GF  ++   ++      S NRR+++L++ R  
Sbjct: 230 GFGEYKPAASNKTAEGRSKNRRVEVLIQPRNA 261


>gi|326942295|gb|AEA18191.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 262

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNEEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256


>gi|30022590|ref|NP_834221.1| flagellar motor protein MotB [Bacillus cereus ATCC 14579]
 gi|206969568|ref|ZP_03230522.1| chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218232559|ref|YP_002369307.1| flagellar motor protein MotB [Bacillus cereus B4264]
 gi|296504987|ref|YP_003666687.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171]
 gi|29898148|gb|AAP11422.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579]
 gi|206735256|gb|EDZ52424.1| chemotaxis protein MotB [Bacillus cereus AH1134]
 gi|218160516|gb|ACK60508.1| chemotaxis protein MotB [Bacillus cereus B4264]
 gi|296326039|gb|ADH08967.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171]
          Length = 262

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256


>gi|94969959|ref|YP_592007.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552009|gb|ABF41933.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 263

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           ++Q  Q +  + +       +Q     ++   ++ +   +        S+    +  L  
Sbjct: 39  SSQTDQKRAAKISSAIEQAFEQLGLGTSNPPGNTSRVAPITPEIRASSSLADRSHETLDI 98

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
            S+ ++ A + +    +L   I   L+          V   TT  G++IS+   +    F
Sbjct: 99  GSQRRVTAAQVQTLRGELQAAIPEELT-------RSDVTLRTTSDGLVISL---QEIGFF 148

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY-SA 295
           D  S+   P +I    +I  +L      + + GHTD  P        NW LS  RA    
Sbjct: 149 DSGSAKLRPSSISAFGRIASILREKQCTVRVEGHTDPMPIHTAQYASNWELSTARATGIV 208

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            +++ + G++   +S   G+A       +D     + NRR+D+++   QG
Sbjct: 209 KRLIQEYGINPGDLSA-GGYAEFHPVGPNDTAEGRAQNRRVDLVILSMQG 257



 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +      T  N   W + YADF+T+L AFF+V++  + TD      I        + L  
Sbjct: 4   RPTRQRRTRANNERWLVSYADFITLLFAFFVVLYASSQTDQKRAAKISSAIEQAFEQLGL 63

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            +       +     +      S     +  ++D+         Q Q L   +      +
Sbjct: 64  GTSNPPGNTSRVAPITPEIRASSSLADRSHETLDIGSQRRVTAAQVQTLRGELQAAIPEE 123

Query: 139 QS 140
            +
Sbjct: 124 LT 125


>gi|329894187|ref|ZP_08270142.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
 gi|328923212|gb|EGG30533.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC3088]
          Length = 341

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 116/343 (33%), Gaps = 50/343 (14%)

Query: 45  MAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASKGIFDEQNPPERSSQNK 97
           MAFF+++     T+    K I               K  +  ++ +  E+  P  + +  
Sbjct: 1   MAFFVLLLSFAETEVPKFKQISGSLKAAFGIEKIVPKITVPMARSLLVEEFTPAVAERTV 60

Query: 98  IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157
           I+   ++   +  ++  +  T   +  +  +     + +  + E  +       E G+ L
Sbjct: 61  INRK-EQQSDETRLESIVKKTEDGEYDEETQLKFQQVQDVLREEINRGMAEVKIENGEIL 119

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS----------------- 200
               D   +  K ++             ++   ++  +  +I                  
Sbjct: 120 VNLLDPSSAGGKPDDSGSQKGGPIPQEVVEMTAKIAKVQAEIKEEISVNLVDRASGQSFG 179

Query: 201 -------------------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                                L   +AD I  G+  E  + G  I I+   N   FD  S
Sbjct: 180 GTSDSTTSNSSEANANSKYQQLQADLADEIASGLA-EIEKQGDKI-IVRLANQGSFDSGS 237

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
           +         L K+G  L+  +  + I GHTD  P     R   NW LS  RA +    L
Sbjct: 238 ATLKNSFGGTLSKLGNTLSRYSGSVLIEGHTDNVPVGFSERFKSNWDLSASRAAAVADYL 297

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           + S   +     I G+A  +    +D     + NRRI+++V+D
Sbjct: 298 LTSTPLQGGSVMIKGYADSKPLDTNDSPVGRANNRRIEVIVDD 340


>gi|297529303|ref|YP_003670578.1| OmpA/MotB domain protein [Geobacillus sp. C56-T3]
 gi|297252555|gb|ADI26001.1| OmpA/MotB domain protein [Geobacillus sp. C56-T3]
          Length = 268

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 10/186 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           +   E    +++       +    +    K+ L+ +  KI S +      ++   +    
Sbjct: 78  TPPAEDEKGRQQYQQQQSQNPPSSINEGEKEELKQIQAKIDSYIHQ---KHLTGKLQTSL 134

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T  G+ I+I+D     +FD  S+    +   +  +I  +L  +    I I GHTD  P  
Sbjct: 135 TDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISALLVMNPPRNIMISGHTDNVPIH 191

Query: 279 NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           N     NW LS+ RA +  +VL+++   + R     G+  ++   ++        NRR++
Sbjct: 192 NEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGYGEYKPIASNATAAGRMKNRRVE 251

Query: 336 ILVEDR 341
           IL+  R
Sbjct: 252 ILILPR 257



 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 4/170 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK       +   SW I YAD +T+L+A F+V++  +  D    + I + F       
Sbjct: 5   MAKKKKSSHEEHMSESWLIPYADLLTLLLALFIVLFASSQIDQKKFQEIARAF----STA 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G+FD Q+P E  +    D    +   +        S N+ ++ +  +      S 
Sbjct: 61  FAGGTGVFDFQSPIEPITPPAEDEKGRQQYQQQQSQNPPSSINEGEKEELKQIQAKIDSY 120

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
             Q        T  +++G  +    D+       E          +I A+
Sbjct: 121 IHQKHLTGKLQTSLTDEGLAITILDDILFDSGSAEVRMKDRRLAAEISAL 170


>gi|218899667|ref|YP_002448078.1| chemotaxis protein MotB [Bacillus cereus G9842]
 gi|218542530|gb|ACK94924.1| chemotaxis protein MotB [Bacillus cereus G9842]
          Length = 262

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256


>gi|75761764|ref|ZP_00741702.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490749|gb|EAO54027.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 256

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256


>gi|229072015|ref|ZP_04205225.1| OmpA/MotB domain protein [Bacillus cereus F65185]
 gi|229081763|ref|ZP_04214256.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228701608|gb|EEL54101.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2]
 gi|228711174|gb|EEL63139.1| OmpA/MotB domain protein [Bacillus cereus F65185]
          Length = 234

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQTKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|196248997|ref|ZP_03147697.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16]
 gi|196211873|gb|EDY06632.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16]
          Length = 191

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             +     ++E            ++ K K+ L  + +KI   +     + +   +    T
Sbjct: 2   EPITPPAAQDEQGQEREKQPSPAMSQKEKEGLAQVKEKIDVYIQE---NKLGGKLQTSLT 58

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
             G+ I+I+D     +FD  S+    +   +  ++  +L  +    + I GHTD  P  N
Sbjct: 59  EEGLAITILDD---ILFDSGSAEVRMKDRRLASEVAALLVMNPPRNVIISGHTDNVPIHN 115

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
                NW LS+ RA +  +VL+++   + R     G+  ++   +++       NRR++I
Sbjct: 116 AQFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGYGEYKPIASNETAAGRMKNRRVEI 175

Query: 337 LVEDR 341
           L+  R
Sbjct: 176 LILPR 180


>gi|167950042|ref|ZP_02537116.1| flagellar motor protein MotB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 151

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           + D  +   + E       I II  +    F    +   P    V+ KI +V+A +   +
Sbjct: 1   MLDKEIDEGMLEVETEATKI-IIRIQEKGSFGSGRATLNPGFFDVISKITKVIASTPGKV 59

Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIAS 324
            + GHTD  P      R NW LS DRA +    +L   G+   R+  + G A     + +
Sbjct: 60  VVAGHTDDIPISTKRFRSNWELSSDRAVTVVHAMLSNHGLDPSRV-SVEGHADSSPLVPN 118

Query: 325 D--PMNSANRRIDILVED 340
           D     + NRR+++++E 
Sbjct: 119 DSWANRAKNRRVELIIER 136


>gi|28211321|ref|NP_782265.1| chemotaxis motB protein [Clostridium tetani E88]
 gi|28203761|gb|AAO36202.1| chemotaxis motB protein [Clostridium tetani E88]
          Length = 252

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +N  +P + +   +      +  +L  K+ S +      N+ + V  ++   G+L+ + D
Sbjct: 78  KNGDIPLVGETTQMGSATGGKENELYDKVKSAVQ---KSNLQESVKIKSDARGVLLELDD 134

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289
                +F+ + +     ++ +L KI ++++     + + GHTD  P +N     NW LS 
Sbjct: 135 S---ILFEIAQADIKQNSLPILDKINKIISTLPNSVMVEGHTDNVPIKNYKYDSNWELST 191

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE--DRQG 343
            RA +  +  +++     +    +G+   +    +D     S NRR+ I++   DR+G
Sbjct: 192 QRAVNVLRYFVETKKQNPQRFTAAGYGEFKPIHPNDTLENRSKNRRVTIVIVSIDREG 249



 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++        N   W   YAD +T+L+ FF++++  ++ D    K I   F       
Sbjct: 8   MSRRKRGKGEGVNGEGWLQTYADTVTLLLTFFVLLYSFSSVDAQKFKQISTAFQSVLSGQ 67

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
              +   F+ +N           +       +N +  K+ S  QK   Q  
Sbjct: 68  NGETVFDFNMKNGDIPLVGETTQMGSATGGKENELYDKVKSAVQKSNLQES 118


>gi|188590401|ref|YP_001920214.1| chemotaxis protein MotB [Clostridium botulinum E3 str. Alaska E43]
 gi|251779316|ref|ZP_04822236.1| chemotaxis protein MotB [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500682|gb|ACD53818.1| chemotaxis protein MotB [Clostridium botulinum E3 str. Alaska E43]
 gi|243083631|gb|EES49521.1| chemotaxis protein MotB [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 247

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 87/210 (41%), Gaps = 9/210 (4%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +S  +E  K+               + +E ++   +   +   S    +   +    +++
Sbjct: 40  SSVDAEKLKSISEAFVSVMTGQSSDSFMEFNMYDGKVPVIGGESDVDGVIDAQSLGKENM 99

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K I + +     +N+   +       G+++ + D     +F+   +  +P +  VL K+
Sbjct: 100 YKDIKNYVE---KNNLSGSMDIIQDERGVILELKDS---VLFESGQADLIPGSKEVLDKV 153

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +++     + + GHTD  P  N     NW LS  RA +  +  +++  ++      +G
Sbjct: 154 DTLVSALPNSVIVEGHTDNVPISNYRYASNWELSTQRAVNVVKYFVETKSNDPMKFSAAG 213

Query: 315 FAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           +  +R  + ++     + NRR++IL+ + +
Sbjct: 214 YGEYRPIVYNNSEENRAKNRRVNILIINEK 243



 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           ++K + D        W   Y+D +T+L+ FF++++ +++ D +  K+I + F     ++M
Sbjct: 3   RRKKSDDGGGLKGDEWLGTYSDCVTLLLTFFILLYSMSSVDAEKLKSISEAF----VSVM 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T        +          I    D     ++  L   +  +  +    +NN+    + 
Sbjct: 59  TGQSSDSFMEFNMYDGKVPVIGGESDVDGVIDAQSLGKENMYKDIKNYVEKNNLSGSMDI 118

Query: 138 QQSEHC 143
            Q E  
Sbjct: 119 IQDERG 124


>gi|292669789|ref|ZP_06603215.1| chemotaxis protein MotB [Selenomonas noxia ATCC 43541]
 gi|292648586|gb|EFF66558.1| chemotaxis protein MotB [Selenomonas noxia ATCC 43541]
          Length = 304

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N + +  +  +       +K    L +  +K+   +      ++   V  E +  G++
Sbjct: 71  PSNSQSDASISGVDNGTGAYLKENADLSEAKEKLEQYIKE---HDLQDQVSTELSEEGLM 127

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I +   +   +F   S+    +   ++  I  +L+   E ++I GHTD  P        N
Sbjct: 128 IRL---KERALFASGSAQLQGQAEQIVPVIAALLSSLPERVTISGHTDNVPISTAQFPSN 184

Query: 285 WRLSLDRAYSAYQVLMKS--GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  RA S  + LM +   ++  R S + G++ +R   ++D     + NRR+++ +
Sbjct: 185 WELSSARAVSLMRGLMTAQPTLNPARFSAL-GYSEYRPIASNDTDEGRAQNRRVEVFI 241


>gi|323341391|ref|ZP_08081635.1| flagellar motor protein B [Lactobacillus ruminis ATCC 25644]
 gi|323091268|gb|EFZ33896.1| flagellar motor protein B [Lactobacillus ruminis ATCC 25644]
          Length = 267

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 115/312 (36%), Gaps = 70/312 (22%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y+D +T+L+  F+V+  ++  D +   A++  F+                 NP + 
Sbjct: 17  WLLPYSDMLTLLLGLFIVVSAMSNVDSNKFNALKNEFSQVM------------SLNPIKN 64

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
            S     + + E  TK        +  Q    ++               H +NSL++   
Sbjct: 65  DSAVDNVIDMGETATKGKGASSASTKKQAAASEQ---------------HVQNSLSK--- 106

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                                        +   ++ +++L+++A+K+   +         
Sbjct: 107 -----------------------------QQARVQERQQLKEVAEKLKQDIQNT---GRA 134

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGH 271
                     G+ +++    ++ +F+  S+        +L K+   L    +  + + G+
Sbjct: 135 GNTTVSYESDGVHLNL---DSSILFNSGSADLSDAVKQMLDKLVPDLKQVSSNPVIVAGY 191

Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328
           TD  P   R+    NW LS  RA +  +  +  G   +    +  +A ++ K ++D    
Sbjct: 192 TDNVPVSKRSNYASNWELSSARAVTVMRYFVSKGAISESNVSVQAYAENKPKASNDTDEG 251

Query: 329 -SANRRIDILVE 339
            + NRR++I+++
Sbjct: 252 KAQNRRVEIIIQ 263


>gi|310659033|ref|YP_003936754.1| motility protein b [Clostridium sticklandii DSM 519]
 gi|308825811|emb|CBH21849.1| motility protein B [Clostridium sticklandii]
          Length = 216

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +Q+  K   +    L  + + + V       G+L+   D     +FD  S+   PE++ 
Sbjct: 53  EMQNFQKLEDTIQEYLDKNQLSESVTVLEEEAGLLLRFQDN---ILFDSGSADLKPESLE 109

Query: 251 VLQKIGEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305
           ++  I ++L         ISI GHTD  P  +     NW LS+ R+ +  + L++ + + 
Sbjct: 110 IMSYIAQLLNAEDFKDKFISIEGHTDDVPMNSPRYPSNWELSVGRSSNVVRFLVENNNMD 169

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             RIS  SG++ +     +D     + NRR+DIL+ 
Sbjct: 170 PKRISA-SGYSEYHPVAQNDTAENRAKNRRVDILIL 204


>gi|228974615|ref|ZP_04135181.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981210|ref|ZP_04141510.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228778410|gb|EEM26677.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407]
 gi|228785018|gb|EEM33031.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 234

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNEEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|182418302|ref|ZP_02949597.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237666437|ref|ZP_04526422.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377684|gb|EDT75228.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237657636|gb|EEP55191.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 244

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 16/210 (7%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++Q+ +    + +  S K  D     D+ +          P L  E  +    ++     
Sbjct: 42  DAQKVQAISQAFSIMSGKSTDSILQYDMYQGSQ-------PVLGGESKIENTIQQSENID 94

Query: 196 AKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            K +   +   V  N +   +       G+++ + D     +F+   +  +  +  +L K
Sbjct: 95  KKTMYEDVKEFVDKNQLNTTIDIAQDENGVVLQLRDN---ILFESGKADLIDGSSEILDK 151

Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312
           I  +++     I I GHTD  P   +I +DNW LS  RA +  +   +  G    R S  
Sbjct: 152 INTLISTLPNSIVIEGHTDNVPISTSIYKDNWDLSTARASNVLRYFTQLKGQDPTRFSA- 210

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340
           +G+  +R K+ +  D   + NRR++IL+  
Sbjct: 211 AGYGEYRPKVDNSTDENRAQNRRVNILIVS 240



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-GKN 75
           + +K    +       W   Y+D +T+LM FF++++ ++  D    +AI Q F+   GK+
Sbjct: 1   MARKKKSSNNELTGDEWLGTYSDCVTLLMTFFVLLYSMSTVDAQKVQAISQAFSIMSGKS 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
             +  +    + + P    ++KI+ +I + 
Sbjct: 61  TDSILQYDMYQGSQPVLGGESKIENTIQQS 90


>gi|126665356|ref|ZP_01736338.1| flagellar motor protein MotB [Marinobacter sp. ELB17]
 gi|126629984|gb|EBA00600.1| flagellar motor protein MotB [Marinobacter sp. ELB17]
          Length = 313

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 100/320 (31%), Gaps = 55/320 (17%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
            ++    + +W + +AD M++L++FF+++   +  D    K I    +            
Sbjct: 5   PEEEKPGIPAWVVTFADLMSLLLSFFVLLLSFSEIDAQKFKQIAGELSA----------- 53

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
                                            G        +          N   +  
Sbjct: 54  -------------------------------AFGVQRDVPAVEVPMGTSIIFDNFSSAPA 82

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
               +    +   D     D  +             + +     K +++L+ L K +   
Sbjct: 83  EPTVINEIKQTTTDQKPEVDTLRGAVDSAALAEATKAAKAAEQEKIQEQLEQLRKVLEPA 142

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L                T+    I I        F   S+    E   +L +I EVLA  
Sbjct: 143 L---------NDGRIAVTQEQHRIVIR-VEEKGSFPSGSAKLTWEFESLLLEIAEVLASI 192

Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ++I GHTD  P   +    NW LS  RA S    L+ SG  E     + G A    +
Sbjct: 193 PGELTIEGHTDNVPISTDRFYSNWDLSAARAASVANALLASGTVEPDRLAVKGLADTAAR 252

Query: 322 IASD--PMNSANRRIDILVE 339
           + +D     + NRR++I+++
Sbjct: 253 VDNDSAENRAKNRRVEIIID 272


>gi|228923254|ref|ZP_04086544.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954780|ref|ZP_04116801.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960776|ref|ZP_04122414.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048216|ref|ZP_04193785.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|229111973|ref|ZP_04241517.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|229129795|ref|ZP_04258762.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|229147069|ref|ZP_04275429.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|229152704|ref|ZP_04280891.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|229180776|ref|ZP_04308114.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|229192709|ref|ZP_04319668.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228590799|gb|EEK48659.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876]
 gi|228602754|gb|EEK60237.1| OmpA/MotB domain protein [Bacillus cereus 172560W]
 gi|228630767|gb|EEK87409.1| OmpA/MotB domain protein [Bacillus cereus m1550]
 gi|228636457|gb|EEK92927.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24]
 gi|228653711|gb|EEL09582.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4]
 gi|228671537|gb|EEL26837.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15]
 gi|228723203|gb|EEL74579.1| OmpA/MotB domain protein [Bacillus cereus AH676]
 gi|228798911|gb|EEM45887.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804900|gb|EEM51498.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836460|gb|EEM81811.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|153005701|ref|YP_001380026.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029274|gb|ABS27042.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 256

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 7/226 (3%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           + K  +  +               +  L    ++   L    D   +  ++    +  L+
Sbjct: 23  RNKAAEADQLRARGAELEAALSTTQGELASSRDEASALKAQLDALSASKQQLQSQVADLA 82

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             K      K  L+  + +     + L  +     V     R  + + + D     +F  
Sbjct: 83  TSKTKLETVKAELEKKSSEYEKMANALRGEIDAGRVELTELRGKMTVKMKD---KILFSS 139

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            S+         L+ + EVL       I + GHTD  P       NW LS+ RA +  + 
Sbjct: 140 GSATLGRAGKDALRAVAEVLTGVEGKVIRVEGHTDNVPLGRGFATNWDLSVARALAVVRF 199

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           L +SGV   R++  +G+  H+   ++D     S NRRI+I++   +
Sbjct: 200 LQESGVQPSRLAA-AGYGEHQPIASNDTPEGRSQNRRIEIVLAPGE 244


>gi|148380179|ref|YP_001254720.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932823|ref|YP_001384478.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937092|ref|YP_001387994.1| chemotaxis MotB protein [Clostridium botulinum A str. Hall]
 gi|148289663|emb|CAL83767.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928867|gb|ABS34367.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933006|gb|ABS38505.1| putative chemotaxis MotB protein [Clostridium botulinum A str.
           Hall]
          Length = 254

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L++  +   +     +S     ++    +++++  K+   +     +     V       
Sbjct: 62  LQEGGSGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIK---KNGYSDKVKVGVDAD 118

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
           G+ I I D     +F+   +  L ++  +L +I ++L      I + GHTD  P  N   
Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           R NW LS  RA +    L    G+  +++  I  +  +  K  +  +   + NRR++I +
Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNVTEAGRAKNRRVEISI 234

Query: 339 EDR 341
             +
Sbjct: 235 VRK 237



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN         
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61

Query: 73  -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
                  G ++  A   I    +  E     +I   +++ I KN    K+         +
Sbjct: 62  LQEGGSGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121

Query: 126 RLENNIFYLSNSQQSEHCKNSL 147
               ++   ++       ++S 
Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143


>gi|322806477|emb|CBZ04046.1| flagellar motor rotation protein MotB [Clostridium botulinum H04402
           065]
          Length = 254

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 192 LQDLA-KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++D+  K+I S L   +  N     V       G+ I I D     +F+   +  L ++ 
Sbjct: 86  IEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSS 142

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSED 307
            +L +I ++L      I + GHTD  P  N   R NW LS  RA +    L    G+  +
Sbjct: 143 ALLTQISKMLKGLDNNIKVTGHTDNQPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPAN 202

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           ++  I  +  +  K   A++   + NRR++I +  +
Sbjct: 203 KL-SIQAYGEYMPKFDNATEAGRAKNRRVEISIVRK 237



 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN         
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61

Query: 73  -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
                  G ++  A   I    +  E     +I   +++ I KN    K+         +
Sbjct: 62  LQEGGSGGDSVGKAGVSIVPSDSVIEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121

Query: 126 RLENNIFYLSNSQQSEHCKNSL 147
               ++   ++       ++S 
Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143


>gi|91229460|ref|ZP_01262927.1| flagellar motor protein [Vibrio alginolyticus 12G01]
 gi|91187396|gb|EAS73750.1| flagellar motor protein [Vibrio alginolyticus 12G01]
          Length = 186

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           +  ++    E    G  I I   R    F + S+   P+   ++++I E++     ++ +
Sbjct: 40  EREIEQGAIEVENLGQQIVIR-MREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRV 98

Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS-- 324
            GHTD  P    + R NW LS  RA S  Q + K  G S  R+ ++ G A     + +  
Sbjct: 99  SGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-RVRGMADTEPLLPNDS 157

Query: 325 DPMNSANRRIDILVEDRQ 342
           D   + NRR++I +   +
Sbjct: 158 DDNRALNRRVEISIMQGE 175


>gi|168179911|ref|ZP_02614575.1| chemotaxis MotB protein [Clostridium botulinum NCTC 2916]
 gi|182669337|gb|EDT81313.1| chemotaxis MotB protein [Clostridium botulinum NCTC 2916]
          Length = 254

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 192 LQDLA-KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++D+  K+I S L   +  N     V       G+ I I D     +F+   +  L ++ 
Sbjct: 86  IEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSS 142

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSED 307
            +L +I ++L      I + GHTD  P  N   R NW LS  RA +    L    G+  +
Sbjct: 143 ALLTQISKMLKGLDNNIKVTGHTDNQPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPAN 202

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           ++  I  +  +  K   A++   + NRR++I +  +
Sbjct: 203 KL-SIQAYGEYMPKFDNATEAGRAKNRRVEISIVRK 237



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN         
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61

Query: 73  -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
                  G ++  A   I    +  E     +I   +++ I KN    K+         +
Sbjct: 62  LQEGGSGGASVGKAGVSIVPSDSVIEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121

Query: 126 RLENNIFYLSNSQQSEHCKNSL 147
               ++   ++       ++S 
Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143


>gi|196039232|ref|ZP_03106538.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|218905736|ref|YP_002453570.1| chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225866485|ref|YP_002751863.1| chemotaxis protein MotB [Bacillus cereus 03BB102]
 gi|196029859|gb|EDX68460.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99]
 gi|218538809|gb|ACK91207.1| chemotaxis protein MotB [Bacillus cereus AH820]
 gi|225788965|gb|ACO29182.1| chemotaxis protein MotB [Bacillus cereus 03BB102]
          Length = 262

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++   E+        +      + + + +    ++ K  Q+  +          S   K
Sbjct: 74  DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133


>gi|332298234|ref|YP_004440156.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332181337|gb|AEE17025.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 236

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGE 257
           +   +S    D     +   +   G++I++        F   S+     ET   + ++ +
Sbjct: 88  VKRAVSLFAPDVKSNKITLSSDERGLVITLASD---SFFAPGSAALNIEETRATVLRLAQ 144

Query: 258 VLAH---STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            L+    S     I GHTD +P  +     NW LS  RA +    L   GV+E +   ++
Sbjct: 145 FLSSKELSGRRFRIEGHTDGTPVASKDFPSNWELSAARAVNVLHYLSDFGVNEAQF-SVA 203

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVED 340
           G+A  R K ++D     + NRR+DI++ D
Sbjct: 204 GYADTRPKFSNDTAEGRAYNRRVDIIILD 232



 Score = 42.6 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLMTAS 80
             +      +W   Y D +T+++ FF++++     D     A+      +P       A+
Sbjct: 3   RKEPEKPSTAWMGTYGDMITLMLCFFVMLYNPTEVDAVQMAALTASLQGDPTAGGQSLAA 62

Query: 81  KGIFDEQNP----PERSSQNKIDLSIDEHITKNSVDLK 114
             + D  N     P       + LS+   ++  + D+K
Sbjct: 63  GRLADLGNTINSLPSLEKGKSLGLSVKRAVSLFAPDVK 100


>gi|153940806|ref|YP_001391525.1| chemotaxis MotB protein [Clostridium botulinum F str. Langeland]
 gi|152936702|gb|ABS42200.1| chemotaxis MotB protein [Clostridium botulinum F str. Langeland]
 gi|295319551|gb|ADF99928.1| chemotaxis MotB protein [Clostridium botulinum F str. 230613]
          Length = 254

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L++  +   +     +S     ++    +++++  K+   +     +     V       
Sbjct: 62  LQEGGSGGASVGKAGISIVPSDSVTEDIKMKEIKSKLEKEIE---KNGYSDKVKVGVDAD 118

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
           G+ I I D     +F+   +  L ++  +L +I ++L      I + GHTD  P  N   
Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R NW LS  RA +    L    G+  +++  I  +  +  K  +      + NRR++I +
Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNATEAGKAKNRRVEISI 234

Query: 339 EDR 341
             +
Sbjct: 235 VRK 237



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN     +  A
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----VIFKA 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              +  E      S        +        + +K   +  +K+ ++
Sbjct: 58  GSNVLQEGGSGGASVGKAGISIVPSDSVTEDIKMKEIKSKLEKEIEK 104


>gi|119714995|ref|YP_921960.1| OmpA/MotB domain-containing protein [Nocardioides sp. JS614]
 gi|119535656|gb|ABL80273.1| OmpA/MotB domain protein [Nocardioides sp. JS614]
          Length = 302

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 119/329 (36%), Gaps = 61/329 (18%)

Query: 18  KKKVAIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +++    + P +     W + YAD +T+LM  F+VM+ ++  D+         +N     
Sbjct: 6   RRRKKPPEEPEHDNHERWLVTYADMLTLLMVLFIVMFAMSQVDEAK-------YNALKSG 58

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           L       F  ++     S + ++                                    
Sbjct: 59  LAEG----FGAESSIMTGSTSVLE------------------------------------ 78

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
               +E   + ++  + +     +   +  ++  EE   L     +   A    KRL+ +
Sbjct: 79  -DNLAETGPDYVSSQAFQAMPADQQQLVRAAVTAEERRRL---QAQYAEAAAEAKRLEAV 134

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K++   L    A  + K V       G+++S++ +    +F+   +        V+  +
Sbjct: 135 RKQLMKALR---AAGLAKDVQATIDDRGLVVSLVSR--HVVFEPDIAQLSARGERVVDTL 189

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL      + I GHT+  P +      +W LS  RA +  + L + G    +   +S 
Sbjct: 190 SRVLRDVPNALRIDGHTNQEPVKPRFFATDWDLSAARAVTVLRRLNEHGDVPKKRLSLSA 249

Query: 315 FAHHRLKI-ASDPMNSA-NRRIDILVEDR 341
           F + R  +  + P +   N+R+DI+V  +
Sbjct: 250 FGNERPLVDPATPGSQEINKRVDIVVLPQ 278


>gi|228903029|ref|ZP_04067168.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
 gi|228967605|ref|ZP_04128628.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792096|gb|EEM39675.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856622|gb|EEN01143.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|304438419|ref|ZP_07398359.1| flagellar motor protein MotB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368502|gb|EFM22187.1| flagellar motor protein MotB [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 306

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           + +  S +                 MK    L +   K+   +     +N+   V  E  
Sbjct: 67  SGMGPSTSMSSATVTTGADTADAAYMKENNDLSEAKAKLDQYIQE---NNLQDQVSTELN 123

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             G++I +   +   +F   S+    +   ++  I  VL+   E ++I GHTD  P    
Sbjct: 124 EEGLMIRL---KERALFASGSAALQGDAERIVPVIAGVLSSLPERVTISGHTDNVPIATA 180

Query: 281 AR-DNWRLSLDRAYSAYQ--VLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
               NW LS  RA S  +  + ++  ++  R S + G++ +R   ++D     + NRR++
Sbjct: 181 QYPSNWELSSARAVSLMRGVMAVQPSLNPARFSAL-GYSEYRPIASNDTEEGRAQNRRVE 239

Query: 336 ILV 338
           + +
Sbjct: 240 VFI 242



 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK A         +W + Y+D MT+L+A F+ ++ ++ TD    +A+ Q F        
Sbjct: 3   RKKHAKPHEEEAGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                 F    P    S   +    D        +    S  + K  Q ++ N      S
Sbjct: 60  MGGPSFFSGMGPSTSMSSATVTTGADTADAAYMKENNDLSEAKAKLDQYIQENNLQDQVS 119


>gi|261403961|ref|YP_003240202.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|329930219|ref|ZP_08283832.1| chemotaxis protein MotB [Paenibacillus sp. HGF5]
 gi|261280424|gb|ACX62395.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10]
 gi|328935241|gb|EGG31722.1| chemotaxis protein MotB [Paenibacillus sp. HGF5]
          Length = 268

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 11/193 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVK 213
           K     T    + +K     +P  + ++  A   ++  +DL +K+   L   + +N +  
Sbjct: 69  KTEPSDTPPNINDHKATTPSVPATTPDQRRAELMRQEQEDL-EKLKKQLDNYIKNNGLTS 127

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            +  +   + ++I+I D     +F    ++  PE   + + I ++L       I + GHT
Sbjct: 128 ELSTKLNHSQLVITIRDN---ALFPSGEAVVKPEARKLAKAISQMLHKFPDYEIIVSGHT 184

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MN 328
           D  P  N     NW LS DRA    ++L+  S +   R   I G+  +     ++     
Sbjct: 185 DNVPISNSKYPSNWDLSSDRALQFMKILLTNSELDPKRFMPI-GYGEYHPIADNNTAVGR 243

Query: 329 SANRRIDILVEDR 341
           + NRR+++ +  +
Sbjct: 244 AKNRRVEVSIIRK 256


>gi|170759482|ref|YP_001787603.1| chemotaxis MotB protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169406471|gb|ACA54882.1| putative chemotaxis MotB protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 254

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L++  +   +     +S     ++    +++++  K+   +           V       
Sbjct: 62  LQEGGSGGASVGKSGVSIVPSDSVTEDIKMKEIKSKLEKEIE---KSGYFDKVKVGVDAD 118

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
           G+ I I D     +F+   +  L ++  +L +I ++L      I + GHTD  P  N   
Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           R NW LS  RA +    L    G+  +++  I  +  +  K   A++   + NRR++I +
Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNATEAGRAKNRRVEISI 234

Query: 339 EDR 341
             +
Sbjct: 235 VRK 237



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN     +  A
Sbjct: 2   KKRESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
              +  E      S        +        + +K   +  +K+ ++ 
Sbjct: 58  GSNVLQEGGSGGASVGKSGVSIVPSDSVTEDIKMKEIKSKLEKEIEKS 105


>gi|52140989|ref|YP_085838.1| flagellar motor protein MotB [Bacillus cereus E33L]
 gi|51974458|gb|AAU16008.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus E33L]
          Length = 262

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANSQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++   E+        +      + + + +    ++ K  Q+  +          S   K
Sbjct: 74  DQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133


>gi|229013711|ref|ZP_04170840.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048]
 gi|228747633|gb|EEL97507.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S N  E       ++++    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNEEKELSANSLEAEQAKKQAEDRAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMLTILEN---VLFDSGKADVKLESLGIAKEMSNLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S + G+  +R    +
Sbjct: 152 TVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPN 210

Query: 325 DP--MNSANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTPEGKAKNRRVEVFILP 228


>gi|187933571|ref|YP_001885053.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B]
 gi|187721724|gb|ACD22945.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B]
          Length = 247

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + + K +   +     +N+   +       G+++ + D     +F+   +  +P +  VL
Sbjct: 97  ESMYKDVKDYVE---KNNLSGAMDIVQDERGVILELKDS---VLFESGQADLIPGSKEVL 150

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            K+  +++     + + GHTD  P  N     NW LS  RA +  +  +++  ++     
Sbjct: 151 DKVDTLISALPNSVIVEGHTDNVPISNYKYASNWELSTQRAVNVVKYFVETKSNDPMKFS 210

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
            +G+  +R  + ++     + NRR++IL+ + +
Sbjct: 211 AAGYGEYRPIVYNNSEENKAKNRRVNILIINEK 243



 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK + D        W   Y+D +T+L+ FF++++ ++  D    ++I Q F     ++M
Sbjct: 3   RKKKSDDGGGLRGDEWLATYSDCVTLLLTFFILLYSMSTVDAQKVQSISQAF----VSVM 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           T   G   +          K+ +   E  T+  +D +
Sbjct: 59  TGQSG---DTFLKYNQYDGKVPIIGGESDTEGVIDAE 92


>gi|153832075|ref|ZP_01984742.1| flagellar motor protein [Vibrio harveyi HY01]
 gi|148871690|gb|EDL70531.1| flagellar motor protein [Vibrio harveyi HY01]
          Length = 430

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 162 DLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           DL K+ N+     +  ++  ++ + +K   ++ D+A+++S  L+  ++  +   V  +  
Sbjct: 253 DLNKASNQTFTNLINLIAPAQVESTVKTDSQVTDIAERVSMYLATEISKGL---VTVDAL 309

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279
              + ISI  Q    +F+  S+  +     V+ K+   L  +   I + GHTD  P   +
Sbjct: 310 PDRVRISIKAQD---LFESGSAEVVEYIQPVISKLARTLEATEGKILVAGHTDDKPIFTS 366

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
               NW LSL RA +  + L+ +   E R+    G    R  + +  D   + NRRI+I 
Sbjct: 367 KYPSNWHLSLARATAMSEQLIANSALEGRVLP-EGLGDARPLVENTSDENRALNRRIEID 425

Query: 338 VE 339
           + 
Sbjct: 426 LM 427


>gi|301056021|ref|YP_003794232.1| motility protein B [Bacillus anthracis CI]
 gi|300378190|gb|ADK07094.1| motility protein B [Bacillus cereus biovar anthracis str. CI]
          Length = 262

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           +     + NRR+++ +  
Sbjct: 239 NTQEGKAKNRRVEVFILP 256



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++   E+        +      + + + +    ++ K  Q+  +          S   K
Sbjct: 74  DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133


>gi|312116065|ref|YP_004013661.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311221194|gb|ADP72562.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 339

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 34/323 (10%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--PPERSSQNKI 98
           +T LM  F+V     A D           +     L      + D  +    ++ +  + 
Sbjct: 29  VTFLMVLFMVAQYFAAQD-------ASGKDTALAKLQRQIAQMADLLSLERSQKKTAMEE 81

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
              + E +  +S + K  ++       +  +       +Q  E    +    ++      
Sbjct: 82  TSGLRETLAASSAENKRLTSLLSVDSAKSGDARVAAVTTQLDEQKSITAQALAQVELLNQ 141

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--------- 209
           +   L K +   EN       ++K      + ++ DL ++++  L+  V +         
Sbjct: 142 QILALRKQLAALENSLGDSDKRDKQA----QAQISDLGQRLNVALAKRVQELSQYRSTFF 197

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--- 266
             +K  L +     ++      ++   FD  S+   P     L K+G  L      I   
Sbjct: 198 GELKKSLGDRDDIQVVGDRFVFQSEIFFDSGSADLSPLGYAELDKLGTALRDLENKIPRD 257

Query: 267 -----SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                 I GHTD  P    A R NW LS  RA S  + L+  GV  +R+   +GF  ++ 
Sbjct: 258 INWVLRIDGHTDVRPIATAAFRSNWELSSQRAISVVKYLVSKGVPPNRLVA-AGFGEYQP 316

Query: 321 KIA--SDPMNSANRRIDILVEDR 341
             +  +D     NRRI++ + ++
Sbjct: 317 LTSGYTDADLRRNRRIELKLTEK 339


>gi|86751586|ref|YP_488082.1| hypothetical protein RPB_4488 [Rhodopseudomonas palustris HaA2]
 gi|86574614|gb|ABD09171.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 341

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 113/324 (34%), Gaps = 23/324 (7%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           F+  L    L +  + +     +  + Q      K L   +  I    +        K+D
Sbjct: 19  FVDALSTLILGIVFLLSVFLVVQFFLSQEVTGKDKALQELNARIAQLNDLLSLEKLGKLD 78

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           +       +  +       ++ K            +  +  E  K   +      + L +
Sbjct: 79  IEEQLSQVRAGLSAAQSERDRVKGLYDGLAGAGSDAAGRAGELGKALESEKQLSARALAQ 138

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVL 216
              L + I+             +    + K+   R+ DL ++++  L+  V +       
Sbjct: 139 VEVLNQQISALRRQLAALEEALEATERRDKESQGRIADLGQRLNLALAQRVQELSRYRSE 198

Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
           F      IL     I I+      ++   FD   ++ LPE    L K+   L        
Sbjct: 199 FFGRLRAILGDRPDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKLAAALTELDKKIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +    V+ + GHTD  P   + + NW LS  RA S  Q L+  GV   R+   +GFA  +
Sbjct: 259 SEIPWVLRVDGHTDRRPITGVFKSNWELSSARAISVVQYLVSLGVPAQRLVA-AGFAEFQ 317

Query: 320 LKIASDPMNS--ANRRIDILVEDR 341
               ++   +   NRRI++ + +R
Sbjct: 318 PLDTANTDEAYRRNRRIELKLTER 341


>gi|49478673|ref|YP_038563.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034432|ref|ZP_03101841.1| chemotaxis protein MotB [Bacillus cereus W]
 gi|49330229|gb|AAT60875.1| motility protein B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992974|gb|EDX56933.1| chemotaxis protein MotB [Bacillus cereus W]
          Length = 262

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           +     + NRR+++ +  
Sbjct: 239 NTQEGKAKNRRVEVFILP 256



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++   E+        +      + + + +    ++ K  Q+  +          S   K
Sbjct: 74  DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133


>gi|226949496|ref|YP_002804587.1| chemotaxis MotB protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843238|gb|ACO85904.1| chemotaxis MotB protein [Clostridium botulinum A2 str. Kyoto]
          Length = 254

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L++      +     +S     ++    +++++  K+   +           V       
Sbjct: 62  LQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIE---KSGYSDKVKVGVDAD 118

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
           G+ I I D     +F+   +  L ++  +L++I ++L      I + GHTD  P  N   
Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLKQISKMLKGLDNNIKVTGHTDNQPISNSKF 175

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           R NW LS  RA +    L    G+S +++  I  +  +  K   A++   + NRR++I +
Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGISANKL-SIQAYGEYMPKFNNATEAGRAKNRRVEISI 234

Query: 339 EDR 341
             +
Sbjct: 235 VRK 237



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN     +  A
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
              +  E      S        +        + +K   +  +K+ ++   +         
Sbjct: 58  GSNVLQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIEKSGYSDKVKVGVDA 117

Query: 140 SE---HCKNSLTRDSEKGKDLCKSTDLEKSINK 169
                  ++ +  +S   + L +S+ L K I+K
Sbjct: 118 DGLEIDIQDVVLFNSGDAEVLKQSSALLKQISK 150


>gi|150019639|ref|YP_001311893.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906104|gb|ABR36937.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 244

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 11/159 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + ++ ++ K I   +     +     V  +    G+ ISI D     +F+   +  L 
Sbjct: 83  AEEDKMTEVKKMIEEEIK---KEGYSDKVKVDLNSEGLAISIQD---VVLFNSGEADVLK 136

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGV 304
           +   +L KI  +L      I + G+TD  P  N   R NW LS  RA +    ++   G+
Sbjct: 137 DVSQLLLKISHMLYGLDNEIKVAGYTDNVPINNGKFRSNWDLSAMRAINVLNYMVSTGGI 196

Query: 305 SEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           ++++I  I  +  H  K   A++   + NRR++I V  +
Sbjct: 197 NQEKI-SIQAYGEHMPKASNATEDGRAKNRRVEIFVVRK 234



 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          K       +   +W + Y+D +T+L+A F+VM+ +  TD    +++ + FN     +   
Sbjct: 3  KKKQHHEEHVDEAWLLPYSDMLTLLLALFIVMFAMGQTDKAKFQSMAKEFN----MIFAG 58

Query: 80 SKGIFDEQN 88
            G+  +  
Sbjct: 59 GTGVMHQDG 67


>gi|187778759|ref|ZP_02995232.1| hypothetical protein CLOSPO_02354 [Clostridium sporogenes ATCC
           15579]
 gi|187772384|gb|EDU36186.1| hypothetical protein CLOSPO_02354 [Clostridium sporogenes ATCC
           15579]
          Length = 251

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISII 229
           +N  +P + +   L  +     +  +K++ + ++  V  N +K  V  +    G++I + 
Sbjct: 73  KNGDVPLVGETTKLGRETGSDAKSDSKEVYNEVNKFVDKNNLKSSVEVKEDGRGVIIQLR 132

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288
           D     +F+   +   P++  ++ KI  ++A     + + GHTD  P +N     NW LS
Sbjct: 133 DN---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIVEGHTDNVPIKNEVYGSNWELS 189

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             RA +  +  +++          +G+  +R      SD   + NRR++I++  ++
Sbjct: 190 TARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDVNKAKNRRVNIVIVSKE 245


>gi|170754769|ref|YP_001781838.1| chemotaxis MotB protein [Clostridium botulinum B1 str. Okra]
 gi|169119981|gb|ACA43817.1| putative chemotaxis MotB protein [Clostridium botulinum B1 str.
           Okra]
          Length = 254

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L++      +     +S     +M    +++++  K+   +           V       
Sbjct: 62  LQEGGGGGASVGKAGVSIVPSDSMTEDIKMKEIKSKLEKEIE---KSGYSDKVKVGVDAD 118

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
           G+ I I D     +F+   +  L ++  +L +I ++L      I + GHTD  P  N   
Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           R NW LS  RA +    L    G+S +++  I  +  +  K   A++   + NRR++I +
Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGISANKL-SIQAYGEYMPKFDNATEAGRAKNRRVEISI 234

Query: 339 EDR 341
             +
Sbjct: 235 VRK 237



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN
Sbjct: 2  KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN 52


>gi|302338088|ref|YP_003803294.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635273|gb|ADK80700.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           I+++    R + L +     +S    +   + V  +    G++I++        F  +S+
Sbjct: 79  IMSLPSTNRGRALDEARRKAISQFEPEIKSQKVRVQQDERGLIITLASD---AFFKPASA 135

Query: 243 IPL-PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298
                E+   LQK+  +L         I GHTD++P         NW LS DRA +    
Sbjct: 136 EVQIEESRETLQKLSALLRSMPGRKFRIEGHTDSTPTDPTGPWPTNWELSTDRATNVLHY 195

Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
           L+  GV+E++  +++GFA        +++   + NRR+DI++  
Sbjct: 196 LVDFGVTENQF-QVAGFADTVPLASESTEEGKAYNRRVDIIILS 238



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG---KNLMTASKG 82
            P    +W   Y D +T+L+ FF++++  +  DD     I   F+  G            
Sbjct: 12  CPTGSPAWMNTYGDMVTLLLTFFVMLYTTSTPDDSKMNLILAAFSGLGMYTGGQTLQEGK 71

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           + +  N            ++DE   K     +    +QK + Q+ E  +     S     
Sbjct: 72  LAELGNMIMSLPSTNRGRALDEARRKAISQFEPEIKSQKVRVQQDERGLIITLASDAFFK 131

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSI 167
             ++  +  E  + L K + L +S+
Sbjct: 132 PASAEVQIEESRETLQKLSALLRSM 156


>gi|319790061|ref|YP_004151694.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
 gi|317114563|gb|ADU97053.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
          Length = 233

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            M+ ++++++   +I   L  L       G+  E  + G  I +    +  +F      P
Sbjct: 82  KMRSRQKIEEKLHEIRQMLKRL-------GINSEVAKFGTSIRLRINTDK-LFPPGEDRP 133

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
            P+ I ++ +I   L      ++I G+TD +P        NW LS  RA +  ++ ++ G
Sbjct: 134 YPQAIPIIMEICRKLKELDLPLTIEGYTDNTPIHTKRFPSNWELSAARATAILRLFIQCG 193

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               ++S  +G   +     ++     + NRRI+I++
Sbjct: 194 YDPKKLSA-AGCGPYHPIAPNNTPEGRAKNRRIEIVI 229



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75
           + +K   +       +W   + D M++L+ FF++++ ++    +   +AI+     FG +
Sbjct: 1   MARKKKEECKAP--PAWLTSFGDLMSLLLTFFILLYSMSTISLEKFYQAIKGIIEAFGGH 58

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
            +   + + + +N P +       +   + I + 
Sbjct: 59  YVIYEQRVINGKNIPVQMPDMYPKMRSRQKIEEK 92


>gi|319778881|ref|YP_004129794.1| Outer membrane protein ImpK/VasF, OmpA/MotB domain protein
           [Taylorella equigenitalis MCE9]
 gi|317108905|gb|ADU91651.1| Outer membrane protein ImpK/VasF, OmpA/MotB domain protein
           [Taylorella equigenitalis MCE9]
          Length = 445

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+++  L   + +N++  V  E+ R     S+++ R    F+  S+    +   V+ ++G
Sbjct: 278 KRLAQYLESEIRENLL-TVRDESDR-----SVVELRGDEFFESGSADIKKQFESVVNRLG 331

Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           + L  +   I I GHTD  P + I    NW LS  RA +  +++       +RI +  G 
Sbjct: 332 DALDETEGNILITGHTDNRPIKTIRFPSNWDLSQARADAVAKIIESRLTQPNRI-RSEGK 390

Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339
           A      ++D       NRR++I + 
Sbjct: 391 ADTMPVTSNDTPENRKRNRRVEITLL 416


>gi|118479664|ref|YP_896815.1| flagellar motor protein MotB [Bacillus thuringiensis str. Al Hakam]
 gi|196044798|ref|ZP_03112032.1| chemotaxis protein MotB [Bacillus cereus 03BB108]
 gi|118418889|gb|ABK87308.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam]
 gi|196024286|gb|EDX62959.1| chemotaxis protein MotB [Bacillus cereus 03BB108]
          Length = 262

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 66  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 239 DTQEGKAKNRRVEVFILP 256



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F           + + 
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D++   E+        +      + + + +    ++ K  Q+  +          S   K
Sbjct: 74  DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133


>gi|323490130|ref|ZP_08095350.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2]
 gi|323396178|gb|EGA89004.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2]
          Length = 256

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 13/205 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           +E   + L   S    +       E S   E     +   S E++   K ++ L D   K
Sbjct: 50  AESFNSELQGGSGVLDEQAPVESFETSPTAELSEDPVTGESPEEVFEAKDQEELLDFQNK 109

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +     + +   +  + TR G+ I I   +   +F+  S+  L  +  +  +I  +
Sbjct: 110 IDTYIDE---NGLAPRLQTDMTRKGLKIII---KEGVLFESGSATILKGSEKITDEISNL 163

Query: 259 L-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA-YSAYQVLMKSGVSEDRISKISGF 315
           L      +I I GHTD  P        NW LS  RA      +L    +S  + S  +G+
Sbjct: 164 LITDPPRMIFIEGHTDNVPAGTAEYPTNWELSSARAINFMRNLLENDKLSPQKFSA-TGY 222

Query: 316 AHHRLKIASDP--MNSANRRIDILV 338
           + ++   ++D     + NRR+++L+
Sbjct: 223 SQYQPIASNDTPEGRAENRRVEVLI 247


>gi|163942243|ref|YP_001647127.1| flagellar motor protein MotB [Bacillus weihenstephanensis KBAB4]
 gi|163864440|gb|ABY45499.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 261

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 85/208 (40%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+       ++      +       K+   A  +K+ + +L  
Sbjct: 52  KQMAVAFRSELAGGTGNKEFLSDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKA 111

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +    +      + T  G++++I++     +FD   +    E++ + +++  
Sbjct: 112 VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 168

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S + G
Sbjct: 169 LLVSASPREITVSGHTDNVPISNAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-G 227

Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 228 YGEYRSIAPNDTPEGKAKNRRVEVFILP 255



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F        T +K   
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            +Q P E    +   L  ++       ++K    N+ K  Q+  +          S
Sbjct: 73  SDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKAVQKGIDKYIEEKQLSSS 128


>gi|108758523|ref|YP_629116.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622]
 gi|108462403|gb|ABF87588.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622]
          Length = 267

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 20/247 (8%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS-----EHCKNSLTRDSEKGKDLC 158
           E+  K   D K      + + + LE  I  L   +++        ++ LT  + + + L 
Sbjct: 32  ENFAKGLNDEKGAREAAEAKVKALEEKIAELEQEREALNTRLGTAESRLTAGAAERRALE 91

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           +      ++N E       L++ K    KR    ++LA+ +   +S          +   
Sbjct: 92  EKNSQLAALNDELARNTKKLAQAKEELEKRSSEYENLAQSLKQEISD-------GKIELS 144

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPF 277
             +  + + + D     +F   S+    E    L+KI + L      I  + GHTD  P 
Sbjct: 145 ELKGKMTVQLKD---KILFASGSARVGKEGEEALKKIADALKTVQGKIIRVEGHTDDVPT 201

Query: 278 RNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334
                  NW LSL RA +  + L  +GV        +G+  ++   A+D     S NRRI
Sbjct: 202 GGGQFPSNWELSLARAMAVVRSLQNAGVDPT-FLSAAGYGQYQPIAANDSAENRSLNRRI 260

Query: 335 DILVEDR 341
           +I++  +
Sbjct: 261 EIVLAPK 267


>gi|228917149|ref|ZP_04080707.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929558|ref|ZP_04092577.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935820|ref|ZP_04098632.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948234|ref|ZP_04110518.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093607|ref|ZP_04224708.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|229124075|ref|ZP_04253267.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228659377|gb|EEL15025.1| OmpA/MotB domain protein [Bacillus cereus 95/8201]
 gi|228689816|gb|EEL43622.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|228811592|gb|EEM57929.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823877|gb|EEM69697.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830137|gb|EEM75755.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842567|gb|EEM87657.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 234

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|16078432|ref|NP_389251.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309232|ref|ZP_03591079.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313560|ref|ZP_03595365.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318482|ref|ZP_03599776.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322755|ref|ZP_03604049.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|321315123|ref|YP_004207410.1| flagellar motor protein MotB [Bacillus subtilis BSn5]
 gi|127250|sp|P28612|MOTB_BACSU RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|143208|gb|AAA22603.1| motility protein B [Bacillus subtilis]
 gi|2633739|emb|CAB13241.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021397|gb|ADV96383.1| flagellar motor protein MotB [Bacillus subtilis BSn5]
          Length = 261

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214
           D    T  E   +  +        KEK    K K   Q+  + + S +   + D  ++  
Sbjct: 66  DYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFIKDKKLEHQ 125

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+LI+I D      FD   +    E + + ++I  +L  +    I I GHTD
Sbjct: 126 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 182

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
             P +N     NW LS+ RA +   +L+++   + ++    G+  ++   ++      S 
Sbjct: 183 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 242

Query: 331 NRRIDILVEDR 341
           NRR+++L+  R
Sbjct: 243 NRRVEVLILPR 253



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 17  IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           + +K        +   SW + YAD +T+L+A F+V++  ++ D    + + + FN     
Sbjct: 1   MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----E 56

Query: 76  LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           + T   G+ D  +  P  +  + ID    E   K     +      +++ + +++ +   
Sbjct: 57  VFTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKF 116

Query: 135 SNSQQSEH 142
              ++ EH
Sbjct: 117 IKDKKLEH 124


>gi|91978797|ref|YP_571456.1| hypothetical protein RPD_4338 [Rhodopseudomonas palustris BisB5]
 gi|91685253|gb|ABE41555.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 341

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 111/340 (32%), Gaps = 20/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTV---LMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +    D   N    +    +  +     L++ FLV+    + +   K    Q  N     
Sbjct: 5   RGRRQDTGFNYWPGFVDALSTLILAIVFLLSVFLVVQFFLSQEVTGKDKALQELNARLAQ 64

Query: 76  LMTASK----GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
           L         G  + +    +          +    K   D   G+ N         N  
Sbjct: 65  LSDLLSLEKLGKLNLEEQLSQVRAGLSAAQSERDRVKGLYDGLAGAGNDAAGRAGELNKA 124

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                   +         + +      +   LE++++  E        +   L  +    
Sbjct: 125 LDSEKQLSARALAQVEVLNQQISALRRQLAALEEALDASEKRDKESQGRIADLGQRLNLA 184

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    +++S   S       ++ +L +     I+      ++   FD   ++ LPE    
Sbjct: 185 LAQRVQELSRYRSEFFGR--LRAILGDRPDIRIVGDRFVFQSEVFFDTGQALLLPEGRAE 242

Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           L K+   L    + I         + GHTD  P     + NW LS  RA S  Q L+  G
Sbjct: 243 LDKLAPALTELDKKIPPEIAWVLRVDGHTDRRPITGAFKSNWELSSARAISVVQYLVSLG 302

Query: 304 VSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           V   R+   +GFA  +    ++  ++   NRRI++ + +R
Sbjct: 303 VPAQRLVA-AGFAEFQPLDIANTDDAYKRNRRIELKLTER 341


>gi|206562638|ref|YP_002233401.1| OmpA family protein [Burkholderia cenocepacia J2315]
 gi|198038678|emb|CAR54638.1| OmpA family protein [Burkholderia cenocepacia J2315]
          Length = 223

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279
             G+ I I       +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N
Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHATGDILVEGHTDSVPIAN 160

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
                NW LS  RA S  + L + GV+  R++ I G A  +  +A D     + NRR+ I
Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTI 219

Query: 337 LV 338
            V
Sbjct: 220 FV 221



 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          +   +      G W I YAD +T LM  FL ++++         A++  +    +    A
Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLA---KYNALDARYQTLARQAGGA 69

Query: 80 SKGIFDEQNPPERSS 94
          +  + D         
Sbjct: 70 ATAVVDTAKSDPAPP 84


>gi|54294667|ref|YP_127082.1| flagellar motor protein MotD [Legionella pneumophila str. Lens]
 gi|53754499|emb|CAH15983.1| hypothetical protein lpl1744 [Legionella pneumophila str. Lens]
          Length = 273

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 18/196 (9%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE  K      D  K+    +N    P  +EK +    K  L +L K +S    G    N
Sbjct: 56  SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKIKGTFKDGLDELNKSLSELEDGDFKLN 113

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +G           + I D +   +FD  S+   PE ++ L K+ E + +    + + G
Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           +TD  P        NW LS  RA +  ++L   G++  RI  ++G+        +  +  
Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221

Query: 328 NSANRRIDILV-EDRQ 342
            S NRR++IL+ ++R+
Sbjct: 222 RSQNRRVNILITKNRK 237



 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GK 74
           +K K    +   +   W + YADF+T+L AFF+VM+ I++ +    K++ +        K
Sbjct: 7   MKSKQKKTEEHQDNHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQK 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           +   A++   + ++ PE            + + K+  +L+ G     +Q  
Sbjct: 67  DQNKATQSTDNLKDGPEEKKIKGTFKDGLDELNKSLSELEDGDFKLNRQEG 117


>gi|261856274|ref|YP_003263557.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261836743|gb|ACX96510.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 323

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 106/310 (34%), Gaps = 69/310 (22%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W +   D MT+L+  F+++        D    +                      +   +
Sbjct: 55  WLLTMVDLMTLLLTMFVLLAAYAYQSKDNTVTMVA-------------------SSGSTQ 95

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
            +Q        +     +     G T  +    +  N +   +     +H K S    S 
Sbjct: 96  QAQKVDKTPTPQTGPMPTTQTSPGETPTQGNIPQAGNALIGKAGETVLDHAKPSAQSSSA 155

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                                                K  QD A+ + + L   V  ++V
Sbjct: 156 ND-----------------------------------KASQDQARALFAGLGKDVDVSVV 180

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           KG +       + +     ++  +F   +S      + +L+++ + L      I+++GHT
Sbjct: 181 KGRI------NLRV-----KDNILFSSGNSALSAAGMQLLKRLADRLKAGDYPIAVQGHT 229

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           D  P   +    NW LS  RA +  Q L+ SGV  +R+S I GFA      ++D     +
Sbjct: 230 DNVPIHTLQFPSNWELSAARAAAVVQELIASGVQPNRLSAI-GFADTHPITSNDTASGRA 288

Query: 330 ANRRIDILVE 339
            NRR+D+ ++
Sbjct: 289 ENRRVDLELQ 298


>gi|315644424|ref|ZP_07897557.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
 gi|315280174|gb|EFU43467.1| OmpA/MotB domain protein [Paenibacillus vortex V453]
          Length = 273

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 11/193 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVK 213
           K L        + +K  +  +P  + ++  A   ++  +DL +K+   L   + +N +  
Sbjct: 69  KTLPSEDPPNVNDHKASSPNVPATTPDQRRAELMRQEQEDL-EKLKKQLDNYIKNNGLTS 127

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            +  +   + ++I+I D     +F    ++  PE   + + I ++L       I + GHT
Sbjct: 128 ELSTKLNHSQLVITIRDN---ALFPSGEAVVKPEARKLAKAISQMLHKFPDYEIIVSGHT 184

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328
           D  P  N     NW LS DRA    ++L+  S +   R   I G+  +       ++   
Sbjct: 185 DNVPIANSRYPSNWDLSSDRALQFMKILLTNSALDPKRFMPI-GYGEYHPIADNKTEAGR 243

Query: 329 SANRRIDILVEDR 341
           + NRR+++ +  +
Sbjct: 244 AKNRRVEVSIIRK 256


>gi|229175219|ref|ZP_04302735.1| OmpA/MotB domain protein [Bacillus cereus MM3]
 gi|228608355|gb|EEK65661.1| OmpA/MotB domain protein [Bacillus cereus MM3]
          Length = 234

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|302037673|ref|YP_003797995.1| flagellar motor protein MotB [Candidatus Nitrospira defluvii]
 gi|300605737|emb|CBK42070.1| Flagellar motor protein MotB [Candidatus Nitrospira defluvii]
          Length = 259

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K+I   +   +A  +    + ET    I+IS+     + +F    +   PE +  L+ +
Sbjct: 93  MKEIMKKIHPSLALEMPDIKIIETGNGTIMISL---PESILFTSGEARVRPEALPFLKSL 149

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            ++L      + I GHTD  P R      NW LS  RA    ++  +           +G
Sbjct: 150 AQILIEMDRHVRILGHTDNVPIRTAQFPSNWELSAVRAVMVVRIFSELYEVPISHLSATG 209

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
           FA  +    +D     + NRR++I++ ++
Sbjct: 210 FADSKPVATNDTPEGRTKNRRVEIIILEK 238



 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 2/153 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK   +   +    W + YADF+T+L AFF+VM+ +++ ++   + +          +
Sbjct: 1   MAKKKHEEHENH--ERWLVSYADFITLLFAFFVVMYSVSSVNEGKYRTVSDSIKAALNPV 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +             +      D+S         +   +   +     +  +  I    N
Sbjct: 59  NSTPSSRLPFAVGDAKPKMINPDMSSANEPVIRRMKEIMKKIHPSLALEMPDIKIIETGN 118

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
                    S+   S + +   ++    KS+ +
Sbjct: 119 GTIMISLPESILFTSGEARVRPEALPFLKSLAQ 151


>gi|307610480|emb|CBX00052.1| hypothetical protein LPW_18071 [Legionella pneumophila 130b]
          Length = 267

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE  K      D  K+    +N    P  +EK      K  L +L K +S    G    N
Sbjct: 50  SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 107

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +G           + I D +   +FD  S+   PE ++ L K+ E + +    + + G
Sbjct: 108 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 156

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           +TD  P        NW LS  RA +  ++L   G++  RI  ++G+        +  +  
Sbjct: 157 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 215

Query: 328 NSANRRIDILV-EDRQ 342
            S NRR++IL+ ++R+
Sbjct: 216 RSQNRRVNILITKNRK 231


>gi|254248921|ref|ZP_04942241.1| OmpA/MotB [Burkholderia cenocepacia PC184]
 gi|124875422|gb|EAY65412.1| OmpA/MotB [Burkholderia cenocepacia PC184]
          Length = 223

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279
             G+ I I       +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N
Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIAN 160

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
                NW LS  RA S  + L + GV+  R++ I G A  +  +A D     + NRR+ I
Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTI 219

Query: 337 LV 338
            V
Sbjct: 220 FV 221



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
          +   +      G W I YAD +T LM  FL ++++ 
Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQ 48


>gi|291483903|dbj|BAI84978.1| flagellar motor protein MotB [Bacillus subtilis subsp. natto
           BEST195]
          Length = 260

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214
           D    T  E   +  +        KEK    K K   Q+  + + S +   + D  ++  
Sbjct: 65  DYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFIKDKKLEHQ 124

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+LI+I D      FD   +    E + + ++I  +L  +    I I GHTD
Sbjct: 125 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 181

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
             P +N     NW LS+ RA +   +L+++   + ++    G+  ++   ++      S 
Sbjct: 182 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 241

Query: 331 NRRIDILVEDR 341
           NRR+++L+  R
Sbjct: 242 NRRVEVLILPR 252



 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K    +      SW + YAD +T+L+A F+V++  ++ D    + + + FN     +
Sbjct: 1   MARKKKKHEDEQVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EV 56

Query: 77  MTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            T   G+ D  +  P  +  + ID    E   K     +      +++ + +++ +    
Sbjct: 57  FTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFI 116

Query: 136 NSQQSEH 142
             ++ EH
Sbjct: 117 KDKKLEH 123


>gi|260438796|ref|ZP_05792612.1| putative chemotaxis protein MotB [Butyrivibrio crossotus DSM 2876]
 gi|292808785|gb|EFF67990.1| putative chemotaxis protein MotB [Butyrivibrio crossotus DSM 2876]
          Length = 265

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 82/331 (24%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +   +D P     W   ++D M +L+ FF++++ ++  D +  + +   F+     L   
Sbjct: 3   RKKNEDPPIKTDGWMNTFSDLMNLLLCFFVMLFSMSTIDAEKFQEVIASFSSSYSVLDGG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S GI              +  S    +T+ S                          S  
Sbjct: 63  STGI----------DDGMLIASGASQLTQLSEYY-----------------------SSM 89

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                +S   + +K +DL    +L+ S                          + +  KI
Sbjct: 90  GASDDDSDKSEIDKAQDLIGKEELKDS--------------------------EQMGDKI 123

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + L  +   N    +  + T+  + +++   +   +F+ +S+    +   VL  +  +L
Sbjct: 124 ENLLDKMGQSN---NIEVQVTQHYVCLNM---KGALLFNSASATLTSDAEKVLSDVAVIL 177

Query: 260 AHS-TEVISIRGHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISK 311
                 +I I GHTD  P       NW        LS  RA + +  L+  G+S  ++  
Sbjct: 178 KMYEDNLIEIEGHTDNVPI------NWDIFTSNNVLSDYRALAVFDFLVDKGISPVKLKH 231

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            SG   +    ++D     + NRR++I + +
Sbjct: 232 -SGRGEYNPIASNDTAEGRAQNRRVEIKIYN 261


>gi|52842007|ref|YP_095806.1| flagellar motor protein MotD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629118|gb|AAU27859.1| flagellar motor protein MotB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 273

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE  K      D  K+    +N    P  +EK      K  L +L K +S    G    N
Sbjct: 56  SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 113

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +G           + I D +   +FD  S+   PE ++ L K+ E + +    + + G
Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           +TD  P        NW LS  RA +  ++L   G++  RI  ++G+        +  +  
Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221

Query: 328 NSANRRIDILV-EDRQ 342
            S NRR++IL+ ++R+
Sbjct: 222 RSQNRRVNILITKNRK 237


>gi|327187188|dbj|BAK08928.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             + + E    +    F  P  +             D+ + +      L  + +   +  
Sbjct: 61  PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G+++ +   +   +F+ + +  L      L+K+G +L+    ++ + GHTD+ P 
Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177

Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
            N     NW LS  RA S  + L++ + +   R    +G+   R  + +        NRR
Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236

Query: 334 IDILVED 340
           + I++ D
Sbjct: 237 VVIVISD 243



 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++    +       W + ++D MT+++ FF++++ ++  D    +AI + F    + +
Sbjct: 1   MKRRRRQQEKG--ATKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
                   + +NP E   +   +   +   ++   +      ++
Sbjct: 57  FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100


>gi|229158119|ref|ZP_04286188.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
 gi|228625348|gb|EEK82106.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342]
          Length = 234

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLSIAKEMSNLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S + G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-GYGEYRAIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|167629589|ref|YP_001680088.1| flagellar motor protein motb, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592329|gb|ABZ84077.1| flagellar motor protein motb, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 298

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 11/177 (6%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
             E     P     + ++K  + LQ++  ++   +       + K V     R G+ IS 
Sbjct: 70  DTEGASDAPPDMSVMESLKETRDLQEIKNRVDRYIEE---KGLEKQVETNLVREGLQISF 126

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287
            D     +FD   +    E +  L  I + L + +  + I GHTD  P        NW L
Sbjct: 127 RD---AALFDSGKADLKREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWDL 183

Query: 288 SLDRAYSAY-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           S  RA +    +L     +  + + + G+  +  K  +D     + NRR+++++  +
Sbjct: 184 SAKRALNVMKYILNDKRNNPVKFTAV-GYGEYHPKATNDTPEGRAQNRRVEVMIIRQ 239



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 36/280 (12%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77
           K       +   +W I YAD +T+L+A F+VM+ ++  D    +A+++       G + +
Sbjct: 3   KKKQHHEEHIDETWLIPYADMLTLLLALFIVMFAVSQVDTKKFEALKKAMESVFKGGSGI 62

Query: 78  TASKGIFDEQN----PPERSSQNKIDLSIDEHITKNSVDL---KIGSTNQKKQYQRLENN 130
            A+    D +     PP+ S    +  + D    KN VD    + G   Q +     E  
Sbjct: 63  MANPTPLDTEGASDAPPDMSVMESLKETRDLQEIKNRVDRYIEEKGLEKQVETNLVREGL 122

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKST-----DLEKSINKEENYFLPPLSKEKILA 185
                ++   +  K  L R++    DL   T     +  +     +N  +          
Sbjct: 123 QISFRDAALFDSGKADLKREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWD 182

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVL-----FETTRTG----ILISIIDQRNTPM 236
           +  K+ L  +   ++   +  V    V            T  G      + ++  R  PM
Sbjct: 183 LSAKRALNVMKYILNDKRNNPVKFTAVGYGEYHPKATNDTPEGRAQNRRVEVMIIRQYPM 242

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                + P             V+    E ++ +G+ DA P
Sbjct: 243 -PGQKATP------------AVVKPVPEPLAPQGNADAMP 269


>gi|148359324|ref|YP_001250531.1| flagellar motor protein MotB [Legionella pneumophila str. Corby]
 gi|296107371|ref|YP_003619071.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148281097|gb|ABQ55185.1| flagellar motor protein MotB [Legionella pneumophila str. Corby]
 gi|295649272|gb|ADG25119.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 267

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE  K      D  K+    +N    P  +EK      K  L +L K +S    G    N
Sbjct: 50  SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 107

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +G           + I D +   +FD  S+   PE ++ L K+ E + +    + + G
Sbjct: 108 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 156

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           +TD  P        NW LS  RA +  ++L   G++  RI  ++G+        +  +  
Sbjct: 157 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 215

Query: 328 NSANRRIDILV-EDRQ 342
            S NRR++IL+ ++R+
Sbjct: 216 RSQNRRVNILIAKNRK 231


>gi|313895933|ref|ZP_07829487.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975358|gb|EFR40819.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 310

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 9/206 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            Q++  K      +               +    +   P +S          K  ++L++
Sbjct: 40  SQTDASKMQALAQAFTAAFNMGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSE 99

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +   ++   V  E +  G++I +   +   +FD  S+    +   ++  I  
Sbjct: 100 AQEKLEQYIKEHDLQDQVSTELSEDGLMIRL---KEKALFDSGSAALQGQAEQIVPVIAA 156

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS--GVSEDRISKISG 314
           +L    E ++I GHTD  P        NW LS  RA S  + LM +   ++  R S + G
Sbjct: 157 LLTSLPERVTISGHTDNVPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-G 215

Query: 315 FAHHRLKIASDPM--NSANRRIDILV 338
           ++ +R   ++D     + NRR+++ +
Sbjct: 216 YSEYRPIASNDTEEGRAQNRRVEVFI 241



 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK A         +W + Y+D MT+L+A F+ ++ ++ TD    +A+ Q F        
Sbjct: 3   RKKHAKPHEEEVGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                 F    P    +   I  + + +      +  +    +K +    E+++    ++
Sbjct: 60  MGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSEAQEKLEQYIKEHDLQDQVST 119

Query: 138 QQSEHC 143
           + SE  
Sbjct: 120 ELSEDG 125


>gi|134298231|ref|YP_001111727.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134050931|gb|ABO48902.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1]
          Length = 236

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E       L  +  +       LQ+L K++   +     +N+   V        + ++I 
Sbjct: 64  ESKSLSDQLIDKTEVKTDTVVELQELKKQLDQYIKE---NNMTTEVETNIINNHLTLTIR 120

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP-FRNIARDNWRL 287
           D     +FD  S++  P++  +++ +G +L    +  + + GHTD  P + N    NW L
Sbjct: 121 D---RALFDSGSAVVKPQSRKIIKAMGSILQQYPKFEVLVAGHTDNQPIYNNTFESNWDL 177

Query: 288 SLDRA-YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S  RA      +L    +   R+  I G+  +R    +      + NRR+++++  +
Sbjct: 178 SSKRALNCMKIMLTNKNLDPRRLVAI-GYGEYRPIAENTTTEGRAKNRRVEVIINQK 233



 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          K       +   SW I YAD +T+L+A F+V++  +  D+    A+++  N      + +
Sbjct: 3  KHREQHEEHIDESWLIPYADLLTLLLALFIVLFASSTIDNQKFNAMKESLNA----ALNS 58

Query: 80 SKGIFDEQN 88
            GI + ++
Sbjct: 59 GAGIMESKS 67


>gi|327438679|dbj|BAK15044.1| flagellar motor protein [Solibacillus silvestris StLB046]
          Length = 251

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           ++ ++RLQ+   ++   ++    + +      + T  G+LI+I D     +FD   +   
Sbjct: 87  IEDQERLQETQNRVDEFIA---INELEDQFETKMTDEGLLITIRDS---ILFDMGRADVK 140

Query: 246 PETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303
            E   +  ++ ++L       + I GHTD  P +      NW LS+ RA +  + ++   
Sbjct: 141 AEYDTIADELAQLLMFDPPRNVVITGHTDNVPIKTPEFDSNWDLSVMRAVNFMKEIVSGN 200

Query: 304 VS-EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              + +   + GF   +    +D     + NRR+++LV+ R
Sbjct: 201 EQLDSKYFSVKGFGEFQPIATNDTQEGRAKNRRVEVLVQPR 241


>gi|327187191|dbj|BAK08930.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             + + E    +    F  P  +             D+ + +      L  + +   +  
Sbjct: 61  PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G+++ +   +   +F+ + +  L      L+K+G +L+    ++ + GHTD+ P 
Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177

Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
            N     NW LS  RA S  + L++ + +   R    +G+   R  + +        NRR
Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236

Query: 334 IDILVED 340
           + I++ D
Sbjct: 237 VVIVISD 243



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++    +       W + ++D MT+++ FF++++ ++  D    +AI + F    + +
Sbjct: 1   MKRRRRQQEKG--ASKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
                   + +NP E   +   +   +   ++   +      ++
Sbjct: 57  FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100


>gi|288553786|ref|YP_003425721.1| flagellar motor protein MotS [Bacillus pseudofirmus OF4]
 gi|34485061|gb|AAB94398.2| channel protein [Bacillus pseudofirmus OF4]
 gi|288544946|gb|ADC48829.1| Flagellar motor rotation protein motS [Bacillus pseudofirmus OF4]
 gi|327187185|dbj|BAK08926.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             + + E    +    F  P  +             D+ + +      L  + +   +  
Sbjct: 61  PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G+++ +   +   +F+ + +  L      L+K+G +L+    ++ + GHTD+ P 
Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177

Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
            N     NW LS  RA S  + L++ + +   R    +G+   R  + +        NRR
Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236

Query: 334 IDILVED 340
           + I++ D
Sbjct: 237 VVIVISD 243



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++    +       W + ++D MT+++ FF++++ ++  D    +AI + F    + +
Sbjct: 1   MKRRRRQQEKG--APKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
                   + +NP E   +   +   +   ++   +      ++
Sbjct: 57  FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100


>gi|228987761|ref|ZP_04147872.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772035|gb|EEM20490.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 234

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLSIAKEMSNLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S + G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-GYGEYRAIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|325271956|ref|ZP_08138407.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51]
 gi|324102904|gb|EGC00300.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51]
          Length = 285

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 10/194 (5%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                  K +    +   ++   E         E  LA      L+ ++  +      L+
Sbjct: 57  NDPERSMKPIPVGEEKPLTVRPAEPLVNDSEQTEAGLAATNTDPLKTISDDVRDAFGDLI 116

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
             N             + I I +  ++ +F    ++P  +   +++K+ ++L      + 
Sbjct: 117 KSN-----QMTVRGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIEKVADILKPFANPVH 170

Query: 268 IRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           + G TD  P R      NW LS  RA S  ++L   GV+  R++ + G+  ++   ++D 
Sbjct: 171 VEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDT 229

Query: 327 --MNSANRRIDILV 338
               + NRR+ +++
Sbjct: 230 ADGRARNRRVVLVI 243



 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q         
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 +    N PERS    I +  ++ +T    +  +  + Q +      N     + 
Sbjct: 52  ------LLGVFNDPERS-MKPIPVGEEKPLTVRPAEPLVNDSEQTEAGLAATNTDPLKTI 104

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S         L + ++           E  I  E N  L   S + + + K    ++ +A
Sbjct: 105 SDDVRDAFGDLIKSNQ-----MTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159

Query: 197 KKISSTLSGLVADNIVKGVLFET 219
             +    + +  +     +   T
Sbjct: 160 DILKPFANPVHVEGFTDNLPIRT 182


>gi|320529440|ref|ZP_08030528.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399]
 gi|320138406|gb|EFW30300.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399]
          Length = 310

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 9/206 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            Q++  K      +               +    +   P +S          K  ++L++
Sbjct: 40  SQTDASKMQALAQAFTAAFNMGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSE 99

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +   ++   V  E +  G++I +   +   +FD  S+    +   ++  I  
Sbjct: 100 AQEKLEQYIKEHDLQDQVSTELSEDGLMIRL---KEKALFDSGSAALQGQAEQIVPVIAA 156

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS--GVSEDRISKISG 314
           +L    E ++I GHTD  P        NW LS  RA S  + LM +   ++  R S + G
Sbjct: 157 LLTSLPERVTISGHTDNVPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-G 215

Query: 315 FAHHRLKIASDPM--NSANRRIDILV 338
           ++ +R   ++D     + NRR+++ +
Sbjct: 216 YSEYRPIASNDTEEGRAQNRRVEVFI 241



 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK A         +W + Y+D MT+L+A F+ ++ ++ TD    +A+ Q F        
Sbjct: 3   RKKHAKPHEEEAGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                 F    P    +   I  + + +      +  +    +K +    E+++    ++
Sbjct: 60  MGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSEAQEKLEQYIKEHDLQDQVST 119

Query: 138 QQSEHC 143
           + SE  
Sbjct: 120 ELSEDG 125


>gi|331269325|ref|YP_004395817.1| chemotaxis motB protein [Clostridium botulinum BKT015925]
 gi|329125875|gb|AEB75820.1| chemotaxis motB protein [Clostridium botulinum BKT015925]
          Length = 242

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 11/195 (5%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            + S   + +   ++    ++   N  +P +   + +  K     + +  K+   +    
Sbjct: 47  NKISSSLQSVLSGSNSNSILDFNSNGEVPIVGPPQEMGPKSGGGNEAMYGKVKEFMDKNK 106

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            DN V+    +    GI+I + D     +FD + +     +  +L KI  +L      I 
Sbjct: 107 LDNTVQ---VKRDARGIIIELKDN---ILFDSAQAEIKAPSKEILDKISRLLESVPNGII 160

Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325
           I GHTD  P  N     NW LS  RA +  +  ++S G++ D+  + +G+        +D
Sbjct: 161 IEGHTDNVPIHNTKYESNWELSTQRAVNVLKYFVESKGLAPDKF-QAAGYGEFHPIEKND 219

Query: 326 --PMNSANRRIDILV 338
                + NRR++IL+
Sbjct: 220 NYADRAKNRRVNILI 234


>gi|229163499|ref|ZP_04291450.1| OmpA/MotB domain protein [Bacillus cereus R309803]
 gi|228620068|gb|EEK76943.1| OmpA/MotB domain protein [Bacillus cereus R309803]
          Length = 233

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 84/208 (40%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+        +      +       K+   A  +++ + +L  
Sbjct: 24  KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSASSLESEKMKKNAEAEVKQQEMNELKA 83

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +  + +      + T  G+ ++I++     +FD   +    E++ + +++  
Sbjct: 84  VQKGIDKYIEENKLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLNIAKEMSN 140

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S + G
Sbjct: 141 LLVSTSPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-G 199

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 200 YGEYRSIAPNDTQEGKAKNRRVEVFILP 227


>gi|115522688|ref|YP_779599.1| hypothetical protein RPE_0661 [Rhodopseudomonas palustris BisA53]
 gi|115516635|gb|ABJ04619.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 341

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 105/312 (33%), Gaps = 16/312 (5%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           +L  F +V + ++       KA+++           L     G    ++   +       
Sbjct: 33  LLSVFLVVQFFLSQEVTGKDKALQELNAKLAQLNDMLSLEKLGKIGLEDQLGQLRAGLAS 92

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
              +    +   D   G+ N         N          +         + +      +
Sbjct: 93  AETERKRVQGLYDGLAGAGNDAAGRANELNKALDSERQISTRALAQIEVLNQQIAALRRQ 152

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              LE++++  E        K   L  +    L    +++S   S       ++ +L   
Sbjct: 153 LAALEEALDVSEKRGKESQGKIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGNR 210

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVI----SIRGH 271
           +   I+      ++   FD   ++ LPE    L K+  VL        + I     + GH
Sbjct: 211 SEIRIVGDRFVFQSEVFFDTGQAVLLPEGRAELDKLASVLIDLGKQIPDEITWVLRVDGH 270

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD  P     + NW LS  RA S  Q L+  GV   R+   +GFA  +    +    +  
Sbjct: 271 TDVRPITGAFKSNWELSSARAISVVQYLVTLGVPAQRLVA-AGFAEFQPLDVAATEEAYR 329

Query: 330 ANRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 330 RNRRIELKLTER 341


>gi|310639572|ref|YP_003944330.1| ompa/motb domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309244522|gb|ADO54089.1| OmpA/MotB domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 275

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                       ++ S  S     +   D        +S D+ K+  +         +  
Sbjct: 37  GMSSLDAKKFETMAQSLSSAFSGGTGVLDHSAANPSSQSMDMGKNKEEVSQPLKSKATST 96

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240
             L  +  +R ++  KK+   +   + +N +  +L  +  ++ ++I+I D     +F   
Sbjct: 97  SDLQKQLAQREEEDLKKLKKQMDQYIQNNGLSTLLNTKLNQSQLMITISDN---ALFSSG 153

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298
            +   PE   + + I  +L       + + GHTD  P  N     N+ LS  R+ +  ++
Sbjct: 154 QAEVKPEARKLAKSISSMLQQFPGYDVIVSGHTDNVPISNSQFPSNFDLSAKRSLNFLRI 213

Query: 299 LMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           L+ +  +   +   I G+  +R    +      + NRR++I V  +
Sbjct: 214 LLLNPQLDPTKFVSI-GYGEYRPLAGNQTGAGRAKNRRVEISVLRK 258


>gi|229186744|ref|ZP_04313902.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
 gi|228596757|gb|EEK54419.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1]
          Length = 234

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|325523698|gb|EGD01964.1| OmpA family protein [Burkholderia sp. TJI49]
          Length = 226

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHT 272
           G+       G+ I I       +F+   +  LPE+  VL +I   L AH+T  I + GHT
Sbjct: 100 GISLVKAPHGVEIGI---DAKILFNVGDARLLPESAPVLDRIALALGAHATGDILVEGHT 156

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNS 329
           D  P  N     NW LS  RA S  + L + GV+  R++ + G A  +  +A D     +
Sbjct: 157 DRVPIANAKYESNWELSSARAGSVVRYLAERGVAPHRLAAV-GRADTQPLVAGDDAASRA 215

Query: 330 ANRRIDILV 338
            NRR+ I V
Sbjct: 216 RNRRVTIFV 224



 Score = 39.9 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
          +   D      G W I YAD +T LM  FL ++++ 
Sbjct: 17 RDDEDAEGTQAGRWLISYADLVTTLMVLFLALYVLQ 52


>gi|311069471|ref|YP_003974394.1| flagellar motor protein MotS [Bacillus atrophaeus 1942]
 gi|310869988|gb|ADP33463.1| flagellar motor protein MotS [Bacillus atrophaeus 1942]
          Length = 209

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ K     +SI KE +   P  +        +KK+     + +    + +   N+   +
Sbjct: 19  DVQKFKSAVESIQKEGSGIQPDNTSINTSDAAQKKQDNRQDELLQKVNTYIQKHNLSAKM 78

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
             +    G+++ +   +   +FD   +  L +   +L +I  +L      I + GHTD+ 
Sbjct: 79  TAKRDERGVILVL---QEAVLFDTGEAAVLKDAETLLHQIAVLLQTMPNEIQVEGHTDSR 135

Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
                    NW LS  RA    Q    K  +   R   + G+A       +   +    N
Sbjct: 136 NISTYRYPSNWELSAARASGVIQYFTSKENLPSKRFIAV-GYADTMPVKDNKTADHMKEN 194

Query: 332 RRIDILVEDRQ 342
           RR++I+++  +
Sbjct: 195 RRVEIVIKKSK 205


>gi|269962960|ref|ZP_06177298.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832322|gb|EEZ86443.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           S DL K+ N+     +  ++  ++ + ++   ++ D+A++IS  L+  ++  +   V  +
Sbjct: 251 SYDLNKASNQSFTNLINLIAPVQVESTVQTDSQVTDIAERISMYLATEISKGL---VTVD 307

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277
                + ISI  Q    +F+  S+  +     V+ K+   L  +   I + GHTD  P  
Sbjct: 308 ALPDRVRISIKAQD---LFESGSAEVVEYIQPVISKLARTLEATEGKILVAGHTDDKPIF 364

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
            +    NW LSL RA +  + L+ +   + R+    G    R  + +  D   + NRRI+
Sbjct: 365 TSKYPSNWHLSLARATAMSEQLIANSALKGRVLP-EGLGDARPLVDNTSDENRALNRRIE 423

Query: 336 ILVE 339
           I + 
Sbjct: 424 IDLM 427


>gi|325981887|ref|YP_004294289.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531406|gb|ADZ26127.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 264

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
             ++  +           +++++++ +AK I   L  LV +     V       GI + I
Sbjct: 83  SNQDSLIKLADNFSTQKARKQEKMKGMAKNILHALEPLVKNG---QVRVTQNSLGITVEI 139

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRL 287
                + +F    +     +I+ LQ I  V+      I++ GHTD  P        NW L
Sbjct: 140 ---NASVLFSPGQAKLAENSILSLQAIANVIKGHEHEINVEGHTDNLPINTENFPSNWEL 196

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           S  RA S  ++ ++ GV   R++ I G+  +R   +++       NRR+ +++  
Sbjct: 197 SSARASSVIRLFIEKGVEAHRLTAI-GYGENRPIESNETFEGRKRNRRVTVMIMS 250


>gi|187932715|ref|YP_001887659.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B]
 gi|187720868|gb|ACD22089.1| putative chemotaxis MotB protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 244

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 11/178 (6%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           KE        S      M   ++L     K+   +      N+   V  +    G++IS 
Sbjct: 64  KEVGEETNENSIVNDAVMVESEKLDTAKSKVDELIKEY---NLEGRVSTQIQERGLIISF 120

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287
            D      F+   +    E    L  I ++L      I + G+TD           NW+L
Sbjct: 121 NDN---VFFNSGDATIKSEYKQKLISISKILNDIDNYIRVEGNTDNVAINTENFHSNWQL 177

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           S  RA +  ++L+K G ++ D++S I G+  +R   ++D     +ANRR+DI++ + +
Sbjct: 178 SAIRAANVVELLVKEGNINSDKLSAI-GYGEYRPVKSNDTEEGRAANRRVDIVILNNE 234



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
              +   N   W + Y+D +T+LM  F+V++  +  D    + I   F 
Sbjct: 2  KKKRENKENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYRQISDSFK 51


>gi|322432961|ref|YP_004210210.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165188|gb|ADW70892.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 239

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGI 224
           S  + E     P+  +     +    L+    K+S  L G++ D I K  ++ + T  G 
Sbjct: 55  SAAQTETAPETPVPDQLRGPTQSADPLRFDTAKLSQQLQGVLGDAIDKHEIVMQQTADGF 114

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283
           +IS+   R    F+   +  LP     LQ   +VL      + + GH+D  P  N     
Sbjct: 115 IISL---RELGFFNSGEATLLPGAAAKLQDTAKVLMEDGLEVRVEGHSDDQPIHNGQFQS 171

Query: 284 NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           NW LS  RA S   +L+ ++G    +I  ++G+  +     +  ++    NRR+D++V  
Sbjct: 172 NWELSTARAMSVLSLLVDEAGFPPTKI-SVAGYGPYHPVADNATLDGRRSNRRVDLVVLS 230

Query: 341 RQ 342
            +
Sbjct: 231 PR 232



 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 57/190 (30%), Gaps = 11/190 (5%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE-------QYFNPFGKNL 76
            +   +   W I YAD +T+L A F+V++  +       + +           +      
Sbjct: 2   GEAGPSHDRWLISYADLVTLLFAVFVVLFAYSWHSKQAIRTVSTAIRSGFDSMSAAQTET 61

Query: 77  MTASKGIFDEQNPPERSSQNKID----LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
              +      + P + +   + D        + +  +++D       Q      +     
Sbjct: 62  APETPVPDQLRGPTQSADPLRFDTAKLSQQLQGVLGDAIDKHEIVMQQTADGFIISLREL 121

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              NS ++     +  +  +  K L +     +     ++  +     +    +   + +
Sbjct: 122 GFFNSGEATLLPGAAAKLQDTAKVLMEDGLEVRVEGHSDDQPIHNGQFQSNWELSTARAM 181

Query: 193 QDLAKKISST 202
             L+  +   
Sbjct: 182 SVLSLLVDEA 191


>gi|107026971|ref|YP_624482.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116691833|ref|YP_837366.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105896345|gb|ABF79509.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116649833|gb|ABK10473.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 223

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN 279
             GI I I       +F+   +  LP +  VL +I + L+ H+T  I + GHTD+ P  N
Sbjct: 104 PHGIEIGI---DAKILFNVGDARLLPHSSPVLNQIAQALSEHATGDILVEGHTDSVPIAN 160

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
                NW LS  RA S  + L + GV+  R++ I G A  +  +A D     + NRR+ I
Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAGSRARNRRVTI 219

Query: 337 LV 338
            V
Sbjct: 220 FV 221



 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +   +      G W I YAD +T LM  FL ++++     +      +Y     +    A
Sbjct: 13  RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLAKYNALD--ARYQTLARQAGGAA 70

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           +  +   ++ P       +D        K++  + +       +       +F + +++ 
Sbjct: 71  TASVDAAKSDPAPPWLALLDS------LKSNGRIALVKAPHGIEIGIDAKILFNVGDARL 124

Query: 140 SEHCKNSLTRDSEKGKD 156
             H    L + ++   +
Sbjct: 125 LPHSSPVLNQIAQALSE 141


>gi|327187194|dbj|BAK08932.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor
           [Bacillus pseudofirmus]
          Length = 252

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             + + E    +    F  P  +             D+ + +      L  + +   +  
Sbjct: 61  PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G+++ +   +   +F+ + +  L      L+K+G +L+    ++ + GHTD+ P 
Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177

Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
            N     NW LS  RA S  + L++ + +   R    +G+   R  + +        NRR
Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236

Query: 334 IDILVED 340
           + I++ D
Sbjct: 237 VVIVISD 243



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++    +       W + ++D MT+++ FF++++ ++  D    +AI + F    + +
Sbjct: 1   MKRRRRQQEKG--APKWMVAFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
                   + +NP E   +   +   +   ++   +      ++
Sbjct: 57  FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100


>gi|83814332|ref|YP_446691.1| chemotaxis protein [Salinibacter ruber DSM 13855]
 gi|83755726|gb|ABC43839.1| probable chemotaxis protein [Salinibacter ruber DSM 13855]
          Length = 241

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 13/188 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D   +   +  +       +P          + +KR    A++    L  L    + + 
Sbjct: 37  RDAISNFQRQPGMFSGSKSVVPADYSSGSSQSRARKR----AEQYEQFLKRLEERGLGEK 92

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  +  + GI + I D     MF    +  L  +  VL+++  +L+     + + GHTD 
Sbjct: 93  IQADLKKEGIHVVIADS---LMFRTGRARLLKPSRTVLRELANLLSRDVGSVVVSGHTDD 149

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIAS--DPMNS 329
            P        NW LS  RA SA + L +        R   + G A    + ++  D   +
Sbjct: 150 RPIGTRKFPSNWELSTARAASAVRFLQERAPEYDSSRFQAV-GHASTDPRASNQTDEGRA 208

Query: 330 ANRRIDIL 337
            NRR++I+
Sbjct: 209 KNRRVEIM 216



 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 30/95 (31%)

Query: 28  NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
                W   Y D MT+L+ FF+++  ++       +     F         +   +  + 
Sbjct: 2   PTAPFWMTTYGDIMTLLVTFFVLLISMSEIRMKKFRDAISNFQRQPGMFSGSKSVVPADY 61

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           +     S+ +      E   K   +  +G   Q  
Sbjct: 62  SSGSSQSRARKRAEQYEQFLKRLEERGLGEKIQAD 96


>gi|294508627|ref|YP_003572686.1| chemotaxis motB protein [Salinibacter ruber M8]
 gi|294344956|emb|CBH25734.1| Chemotaxis motB protein [Salinibacter ruber M8]
          Length = 263

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 13/188 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D   +   +  +       +P          + +KR    A++    L  L    + + 
Sbjct: 59  RDAISNFQRQPGMFSGSKSVVPADYSSGSSQSRARKR----AEQYEQFLKRLEERGLGEK 114

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           +  +  + GI + I D     MF    +  L  +  VL+++  +L+     + + GHTD 
Sbjct: 115 IQADLKKEGIHVVIADS---LMFRTGRARLLKPSRTVLRELANLLSRDVGSVVVSGHTDD 171

Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIAS--DPMNS 329
            P        NW LS  RA SA + L +        R   + G A    + ++  D   +
Sbjct: 172 RPIGTRKFPSNWELSTARAASAVRFLQERAPEYDSSRFQAV-GHASTDPRASNQTDEGRA 230

Query: 330 ANRRIDIL 337
            NRR++I+
Sbjct: 231 KNRRVEIM 238



 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 31/100 (31%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
             D       W   Y D MT+L+ FF+++  ++       +     F         +   
Sbjct: 19  DGDDMPTAPFWMTTYGDIMTLLVTFFVLLISMSEIRMKKFRDAISNFQRQPGMFSGSKSV 78

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           +  + +     S+ +      E   K   +  +G   Q  
Sbjct: 79  VPADYSSGSSQSRARKRAEQYEQFLKRLEERGLGEKIQAD 118


>gi|254973922|ref|ZP_05270394.1| chemotaxis protein [Clostridium difficile QCD-66c26]
 gi|255091309|ref|ZP_05320787.1| chemotaxis protein [Clostridium difficile CIP 107932]
 gi|255312966|ref|ZP_05354549.1| chemotaxis protein [Clostridium difficile QCD-76w55]
 gi|255515725|ref|ZP_05383401.1| chemotaxis protein [Clostridium difficile QCD-97b34]
 gi|255648819|ref|ZP_05395721.1| chemotaxis protein [Clostridium difficile QCD-37x79]
 gi|260682038|ref|YP_003213323.1| chemotaxis protein [Clostridium difficile CD196]
 gi|260685636|ref|YP_003216769.1| chemotaxis protein [Clostridium difficile R20291]
 gi|306518934|ref|ZP_07405281.1| chemotaxis protein [Clostridium difficile QCD-32g58]
 gi|260208201|emb|CBA60548.1| chemotaxis protein [Clostridium difficile CD196]
 gi|260211652|emb|CBE01912.1| chemotaxis protein [Clostridium difficile R20291]
          Length = 231

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
              +   L   V + N+   V  +    GIL+ + D     +FD   S    ++   L K
Sbjct: 85  KSNLEQDLKDKVNNSNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKADSKATLNK 141

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
           + +++      I I GHTD  P ++     NW LS  RA S  +  ++  G+   R+   
Sbjct: 142 VYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-RLFSA 200

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338
           +G   ++  ++++     + NRR++IL+
Sbjct: 201 TGCGEYQPLVSNETAKGRAENRRVNILI 228



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75
           + +K        N  +W   YAD +T+++ FF++++  +  D +  K I       F   
Sbjct: 1   MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIADALKGQFSGI 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
            M ++     E++P E    +K D S  E   K+ V+ 
Sbjct: 61  SMFSTGSSTSEKSPIESVLVDKNDKSNLEQDLKDKVNN 98


>gi|229135343|ref|ZP_04264134.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
 gi|228648118|gb|EEL04162.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196]
          Length = 234

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E       ++++    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNEEKELSASSLEAEQAKKQAEDRAKEKKEMDELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
              +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -KQLSSSFQTKLTEKGLMLTILEN---VLFDSGKADVKLESLGIAKEMSNLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPN 210

Query: 325 DP--MNSANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTPEGKAKNRRVEVFILP 228


>gi|221210919|ref|ZP_03583899.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221169875|gb|EEE02342.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 218

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
               ++ + ++ L A      +       GI I I       +F    +  LP+ + VL+
Sbjct: 72  QAPARVPAWVAQLEALKAGGRISLVKAPHGIEIGI---DAGILFHVGDAHLLPDALPVLE 128

Query: 254 KIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +I + L  H+T  I + GHTD+ P  N     NW LS  RA +  +   + G++  R++ 
Sbjct: 129 RIAQALGPHATGDILVEGHTDSVPIANAKYESNWELSSARAGAVVRYFAERGIAPHRLAA 188

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILV 338
           + G A  +  +A D     + NRR+ I V
Sbjct: 189 V-GRADTQPLVAGDDASSRARNRRVTIFV 216



 Score = 36.8 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
              G W I YAD +T LM  FL ++++     +  +A
Sbjct: 16 GTQSGRWLISYADLITTLMVLFLALYVLQLAKFNALEA 53


>gi|251777807|ref|ZP_04820727.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082122|gb|EES48012.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 244

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E        S      M   ++L     K+   +      N+   V  +    G++IS  
Sbjct: 65  ETGEETNENSIVNDAVMGESEKLDTAKSKVDELIKEY---NLEGSVSTQIQERGLIISFN 121

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288
           D      F+   +    E    L  I ++L +    I + G+TD           NW+LS
Sbjct: 122 DN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTDNVAINTENFHSNWQLS 178

Query: 289 LDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
             RA +  ++L+K G +S D++S I G+  +R   ++D     +ANRR+DI++ + +
Sbjct: 179 AIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRRVDIVILNNE 234



 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          ++KK        N   W + Y+D +T+LM  F+V++  +  D    K I   F 
Sbjct: 1  MRKKRESK---ENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYKQISNSFK 51


>gi|319647377|ref|ZP_08001599.1| YtxE protein [Bacillus sp. BT1B_CT2]
 gi|317390724|gb|EFV71529.1| YtxE protein [Bacillus sp. BT1B_CT2]
          Length = 229

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 11/158 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A K  K   DL KKI+  +     + +   +  +    G+++ +   +   +FD   +  
Sbjct: 76  AEKTAKSQDDLLKKINDYIE---KNELSSLIAAKRDERGVILVL---QEAVLFDSGKADL 129

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KS 302
             +   +L KI  +L   +  I + GHTD+ P        NW LS  RA +       K 
Sbjct: 130 KDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARASTVIGYFTSKE 189

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            +   R   I G+A  +      ++     NRR++I++
Sbjct: 190 KLDSSRFLAI-GYADTKPVRDNRTESHMKENRRVEIVI 226



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74
           ++ +    +      +W I ++D +T+++ FF++++ ++  D +  KA    F     GK
Sbjct: 3   LRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGK 62

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           ++    K   D++      SQ+ +   I+++I KN +   I +   ++ 
Sbjct: 63  SVAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERG 111


>gi|167588461|ref|ZP_02380849.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 223

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            V       G+ I I       +F+   +  LP+   VL +I  VL       I + GHT
Sbjct: 97  QVTVVNAAHGVEIGI---NAKILFNVGDARLLPDASGVLARIAGVLKAHPATSILVEGHT 153

Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           D+ P        NW LS  RA +  + L++ GV   R++ I G A +   +A D   +  
Sbjct: 154 DSVPISTAKYESNWELSSARAGAVVRYLVERGVEPHRLAAI-GRADNLPLVAGDDAAARA 212

Query: 331 -NRRIDILVE 339
            NRR+ I V+
Sbjct: 213 KNRRVTIFVQ 222



 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
               G W I YAD +T LM  FL ++++ 
Sbjct: 22 EGAQSGRWLISYADLVTTLMVLFLALYVLQ 51


>gi|54297693|ref|YP_124062.1| flagellar motor protein MotD [Legionella pneumophila str. Paris]
 gi|53751478|emb|CAH12896.1| hypothetical protein lpp1744 [Legionella pneumophila str. Paris]
          Length = 273

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           SE  K      D  K+    +N    P  +EK      K  L +L K +S    G    N
Sbjct: 56  SEGMKSAFNQKDQNKATQSTDNIKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 113

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
             +G           + I D +   +FD  S+   PE ++ L K+ E + +    + + G
Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           +TD  P        NW LS  RA +  ++L   G++  RI  ++G+        +  +  
Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221

Query: 328 NSANRRIDILV-EDRQ 342
            S NRR++IL+ ++R+
Sbjct: 222 RSQNRRVNILITKNRK 237


>gi|167034899|ref|YP_001670130.1| flagellar motor protein MotD [Pseudomonas putida GB-1]
 gi|166861387|gb|ABY99794.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 285

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 10/182 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             +   S+   E         E  LA      L+ ++  +      L+  N         
Sbjct: 69  GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN-----QMTV 123

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
               + I I +  ++ +F    ++P  +   ++ K+  +L      + + G TD  P R 
Sbjct: 124 RGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIDKVANILKPFANPVHVEGFTDNLPIRT 182

Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA S  ++L   GV+  R++ + G+  ++   ++D     + NRR+ +
Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTADGRARNRRVVL 241

Query: 337 LV 338
           ++
Sbjct: 242 VI 243



 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 5/167 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q     FN  
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
            +++     G     +        K     +  +   +VD     ++  +       N  
Sbjct: 60  ERSMKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN 119

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            ++        +  L      G      +D   +I  +    L P +
Sbjct: 120 QMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIDKVANILKPFA 166


>gi|296329693|ref|ZP_06872178.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674090|ref|YP_003865762.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153191|gb|EFG94055.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412334|gb|ADM37453.1| motility protein B; MotB component of the stator flagellum complex
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 261

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214
           D    T  E   +  +        KEK    K K   Q   + + S +   + D  ++  
Sbjct: 66  DYSSVTPPENESDGIDEVEKDKEEKEKNKKEKEKAADQKELENVKSQVEKFIKDKKLEHQ 125

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+LI+I D      FD   +    E + + ++I  +L  +    I I GHTD
Sbjct: 126 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 182

Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
             P +N     NW LS+ RA +   +L+++   + ++    G+  ++   ++      S 
Sbjct: 183 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 242

Query: 331 NRRIDILVEDR 341
           NRR+++L+  R
Sbjct: 243 NRRVEVLILPR 253



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 17  IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           + +K        +   SW + YAD +T+L+A F+V++  ++ D    + + + FN     
Sbjct: 1   MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----E 56

Query: 76  LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           + T   G+ D  +  P  +  + ID    +   K     +      +K+ + +++ +   
Sbjct: 57  VFTGGTGVMDYSSVTPPENESDGIDEVEKDKEEKEKNKKEKEKAADQKELENVKSQVEKF 116

Query: 135 SNSQQSEH 142
              ++ EH
Sbjct: 117 IKDKKLEH 124


>gi|42783685|ref|NP_980932.1| flagellar motor protein MotB [Bacillus cereus ATCC 10987]
 gi|42739614|gb|AAS43540.1| sodium-driven polar flagellar protein PomB, putative [Bacillus
           cereus ATCC 10987]
          Length = 261

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+               +       K+   A  +++ + +L  
Sbjct: 52  KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 111

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +  + +      + T  G+ ++I++     +FD   +    E++ + +++  
Sbjct: 112 VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 168

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S + G
Sbjct: 169 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 227

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 228 YGEYRSIAPNDTQEGKAKNRRVEVFILP 255



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F        T +K   
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            +Q P +    +   L  ++       ++K    N+ K  Q+  +     +    S
Sbjct: 73  SDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKAVQKGIDKYIEENRLSSS 128


>gi|229090688|ref|ZP_04221921.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
 gi|228692630|gb|EEL46356.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42]
          Length = 126

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                TG+ + I+D     +FD   +   PE   ++ ++          I + GHTD+ P
Sbjct: 3   VYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRP 59

Query: 277 FRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANR 332
             N     NW LS  R A   + ++    V + R++ + G+A  +  + +D P N   NR
Sbjct: 60  IHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWEKNR 118

Query: 333 RIDILVED 340
           R+ I +++
Sbjct: 119 RVVIYIKE 126


>gi|253681414|ref|ZP_04862211.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873]
 gi|253561126|gb|EES90578.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873]
          Length = 242

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           +  + +   V  +    GI+I + D     +FD + +     +  +L KI  +L      
Sbjct: 102 MDKNKLNNTVQVKRDAKGIIIELKDN---ILFDSAQAEIKTPSKEILDKISNLLESVPNG 158

Query: 266 ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323
           I I GHTD  P  N     NW LS  RA +  +  +++ G++ D+  + +G+        
Sbjct: 159 IIIEGHTDNVPIHNAKYASNWELSTQRAVNVLKYFVENKGLAPDKF-QAAGYGEFHPIEK 217

Query: 324 SD--PMNSANRRIDILVEDRQ 342
           +D     + NRR++IL+   +
Sbjct: 218 NDNYANKAKNRRVNILITSGE 238


>gi|222054510|ref|YP_002536872.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563799|gb|ACM19771.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 287

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           ++L + +   E        +   L   +++ +Q  +K     L  + ++     V     
Sbjct: 103 SELRQKVTDLETENARLKDEIANLKKAKEEEVQKTSKTYEDLLEKMKSEISQGQVTISEL 162

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           +  + ++++D     +FD   +   PE ++VLQK+ ++L +  +  I I GHTD      
Sbjct: 163 KGKLTVNMVD---AVLFDSGKAEIKPEGLIVLQKVIDILKNIKDKSIRIEGHTDNDQIGG 219

Query: 280 I----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                 + NW LS  RA +  + L + G+    +S I+ +   +   A+D     + NRR
Sbjct: 220 ALAKKYQTNWELSAARAINVTRYLQQQGIDPLNLSAIA-YGEFKPVAANDSREGKAKNRR 278

Query: 334 IDILVEDRQ 342
           I+I++  ++
Sbjct: 279 IEIILVPKE 287


>gi|52081472|ref|YP_080263.1| flagellar motor protein MotS [Bacillus licheniformis ATCC 14580]
 gi|52786848|ref|YP_092677.1| flagellar motor protein MotS [Bacillus licheniformis ATCC 14580]
 gi|52004683|gb|AAU24625.1| YtxE [Bacillus licheniformis ATCC 14580]
 gi|52349350|gb|AAU41984.1| YtxE [Bacillus licheniformis ATCC 14580]
          Length = 229

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 11/158 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A K  K   DL KKI+  +     + +   +  +    G+++ +   +   +FD   +  
Sbjct: 76  AEKTAKSQDDLLKKINDYIE---KNELSSLIAAKRDERGVILVL---QEAVLFDSGKADL 129

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KS 302
             +   +L KI  +L   +  I + GHTD+ P        NW LS  RA +       K 
Sbjct: 130 KDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARASTVIGYFTSKE 189

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            +   R   I G+A  +      ++     NRR++I++
Sbjct: 190 KLDSSRFLAI-GYADTKPVRDNRTESHMKENRRVEIVI 226



 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74
           ++ +    +      +W I ++D +T+++ FF++++ ++  D +  KA    F     GK
Sbjct: 3   LRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGK 62

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           +     K   D++      SQ+ +   I+++I KN +   I +   ++ 
Sbjct: 63  SAAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERG 111


>gi|188587883|ref|YP_001922642.1| chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498164|gb|ACD51300.1| putative chemotaxis MotB protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 244

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E        S      M   ++L     K+   +      N+   V  +    G++IS  
Sbjct: 65  ETGEETNENSIVNDAVMGESEKLDTAKSKVDELIKEY---NLEGSVSTQIQERGLIISFN 121

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288
           D      F+   +    E    L  I ++L +    I + G+TD           NW+LS
Sbjct: 122 DN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTDNVAINTENFHSNWQLS 178

Query: 289 LDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
             RA +  ++L+K G +S D++S I G+  +R   ++D     +ANRR+DI++ + +
Sbjct: 179 AIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRRVDIVILNNE 234



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          ++KK        N   W + Y+D +T+LM  F+V++  +  D    K I   F 
Sbjct: 1  MRKKRESK---ENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYKQISNSFK 51


>gi|206977733|ref|ZP_03238624.1| chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|217961995|ref|YP_002340565.1| flagellar motor protein MotB [Bacillus cereus AH187]
 gi|222097978|ref|YP_002532035.1| flagellar motor protein motb [Bacillus cereus Q1]
 gi|206744034|gb|EDZ55450.1| chemotaxis protein MotB [Bacillus cereus H3081.97]
 gi|217067135|gb|ACJ81385.1| chemotaxis protein MotB [Bacillus cereus AH187]
 gi|221242036|gb|ACM14746.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus Q1]
 gi|324328404|gb|ADY23664.1| flagellar motor protein MotB [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 261

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+               +       K+   A  +++ + +L  
Sbjct: 52  KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 111

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +  + +      + T  G+ ++I++     +FD   +    E++ + +++  
Sbjct: 112 VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 168

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S + G
Sbjct: 169 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 227

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 228 YGEYRSIAPNDTQEGKAKNRRVEVFILP 255



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F        T +K   
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            +Q P +    +   L  ++       ++K    N+ K  Q+  +     +    S
Sbjct: 73  SDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKAVQKGIDKYIEENRLSSS 128


>gi|2853603|gb|AAC08067.1| MotB [Pseudomonas putida]
          Length = 285

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 10/182 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             +   S+   E         E  LA      L+ ++  +      L+  N         
Sbjct: 69  GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN-----QMTV 123

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
               + I I +  ++ +F    ++P  +   ++ K+  +L      + + G TD  P R 
Sbjct: 124 RGNELWIEI-ELSSSLLFGSGDAMPSDKAFAIIDKVASILKPFANPVHVEGFTDNLPIRT 182

Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA S  ++L   GV+  R++ + G+  ++    +D     + NRR+ +
Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVVL 241

Query: 337 LV 338
           ++
Sbjct: 242 VI 243



 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 5/167 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q     FN  
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
            +++     G     +        K     +  +   +VD     ++  +       N  
Sbjct: 60  ERSMKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN 119

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            ++        +  L+     G      +D   +I  +    L P +
Sbjct: 120 QMTVRGNELWIEIELSSSLLFGSGDAMPSDKAFAIIDKVASILKPFA 166


>gi|299134154|ref|ZP_07027347.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298590901|gb|EFI51103.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 338

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 118/334 (35%), Gaps = 23/334 (6%)

Query: 28  NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
           +N G+    +  F+  L    L +  + +     +  + Q  +   K L   +  I    
Sbjct: 8   HNGGTGLNYWPGFVDALSTLVLAIVFLLSVFLVVQFYLSQEVSGKDKALERLNAQIAQLT 67

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           N          +L  ++ I +    L      + +   ++E+          ++      
Sbjct: 68  NLLSLEKVTSGNL--NDQIAQLRASLATTEAERDRAKGQIESLSGGAGGGDLNKQLATEK 125

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
                    +        ++ ++       L+  +    + ++++ DL ++++  L+  V
Sbjct: 126 QISERALAQVEVLNQQISALRRQLAALEDALNASEQKGKESQEKIADLGQRLNVALAQRV 185

Query: 208 ADNIVKGVLFETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEV 258
            +       F      IL     I I+      ++   FD  S+  LPE    L ++   
Sbjct: 186 QELSRYRSEFFGRLRTILGDRPDIRIVGDRFVFQSEVFFDSGSAALLPEGRNELDQLATA 245

Query: 259 L--------AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L        A    V+ + GHTD  P  +   + NW LS  RA S  Q L+  GVS  R+
Sbjct: 246 LGDLEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWDLSAARAISVVQYLISRGVSPQRL 305

Query: 310 SKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
              +GF   +         +   NRRI++ + ++
Sbjct: 306 VA-AGFGEFQPLDTGTTEEAYKRNRRIELKLTEK 338


>gi|126697829|ref|YP_001086726.1| chemotaxis protein [Clostridium difficile 630]
 gi|255099425|ref|ZP_05328402.1| chemotaxis protein [Clostridium difficile QCD-63q42]
 gi|115249266|emb|CAJ67079.1| Flagellar motor rotation protein MotB (Chemotaxis protein MotB)
           [Clostridium difficile]
          Length = 231

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
              +   L   V + N+   V  +    GIL+ + D     +FD   S    ++   L K
Sbjct: 85  KSNLEQDLKDKVNNSNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKVDSKATLNK 141

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
           + +++      I I GHTD  P ++     NW LS  RA S  +  ++  G+   R+   
Sbjct: 142 VYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-RLFSA 200

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338
           +G   ++  ++++     + NRR++IL+
Sbjct: 201 TGCGEYQPLVSNETAKGRAENRRVNILI 228



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75
           + +K        N  +W   YAD +T+++ FF++++  +  D +  K I       F   
Sbjct: 1   MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIADALKGQFSGT 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
            + ++     E++P +    +K D S  E   K+ V+ 
Sbjct: 61  SIFSTGSSTSEKSPIDSVLVDKNDKSNLEQDLKDKVNN 98


>gi|255305283|ref|ZP_05349455.1| chemotaxis protein [Clostridium difficile ATCC 43255]
          Length = 231

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +L + +   ++     N+   V  +    GIL+ + D     +FD   S    ++   L 
Sbjct: 87  NLKQDLKDKVNN---SNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKADSKATLN 140

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311
           K+ +++      I I GHTD  P ++     NW LS  RA S  +  ++  G+   ++  
Sbjct: 141 KVYDMIKMIKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-KLFS 199

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338
            +G   ++  ++++     + NRR++IL+
Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75
           + +K        N  +W   YAD +T+++ FF++++  +  D +  K I       F   
Sbjct: 1   MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIANALKGQFSGT 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
            M ++     E++P E    +K D S  +   K+ V+ 
Sbjct: 61  SMFSTGSSTSEKSPIESVLVDKNDKSNLKQDLKDKVNN 98


>gi|300855151|ref|YP_003780135.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
 gi|300435266|gb|ADK15033.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM
           13528]
          Length = 249

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 9/189 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVL 216
                ++ +     N F+              K  QD   +I  TL   +  D     V 
Sbjct: 57  SGEKSIQNNGGSSTNQFIETGESTDKPDESAGKTEQDTMNEIKKTLDAKIKQDGYDDKVK 116

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E ++ G+ ISI   +   +F+   +  L     +L  I E++ +    I I GHTD  P
Sbjct: 117 VEISKDGLGISI---QEAILFNSGDAEVLTHIHPLLISISEMIRNLDNNIRIAGHTDNVP 173

Query: 277 FRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
             N   R NW LS  RA +    ++K  G++  ++  I  ++ ++ K  +      + NR
Sbjct: 174 IHNSKFRSNWDLSAMRAINVMNFMVKNGGINITKV-SIQAYSEYQPKSTNLTKEGRAQNR 232

Query: 333 RIDILVEDR 341
           R++I +  +
Sbjct: 233 RVEIFIVRK 241



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 2/152 (1%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77
           K       +   +W I YAD +T+L+A F+VM+ I+  D +    I Q FN    G+  +
Sbjct: 3   KKRQHHEEHVDETWLIPYADMLTLLLALFIVMFAISKVDQEKLAKISQQFNVIFSGEKSI 62

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             + G    Q      S +K D S  +       ++K     + KQ    +     +S  
Sbjct: 63  QNNGGSSTNQFIETGESTDKPDESAGKTEQDTMNEIKKTLDAKIKQDGYDDKVKVEISKD 122

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
                 + ++  +S   + L     L  SI++
Sbjct: 123 GLGISIQEAILFNSGDAEVLTHIHPLLISISE 154


>gi|251794146|ref|YP_003008877.1| OmpA/MotB domain protein [Paenibacillus sp. JDR-2]
 gi|247541772|gb|ACS98790.1| OmpA/MotB domain protein [Paenibacillus sp. JDR-2]
          Length = 272

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
                   ++ E      S +  S           + G+   +  D  K  +K+ +    
Sbjct: 36  YAASSTDARKFERMSEAFSAAFNSGAGIMDNPSVIKSGEQPQQQIDDGKKTSKDRHEDTE 95

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
              +E I   K ++ L+ L K++   +     + +   +  +  ++ ++I+I D     +
Sbjct: 96  SNLQELI--KKEQEDLEKLKKQLDQYIK---KNGLSSELETKLNQSQLMITISDN---AL 147

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294
           F   S     E+  +   I ++L   T   I + GHTD  P R    + NW LS  RA  
Sbjct: 148 FASGSDALKTESKELAANISKMLEPYTGYEIVVSGHTDDQPIRTQNFKSNWDLSSSRAIR 207

Query: 295 AY-QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
               +L  S +  +R S I G+  +R   ++D     + NRR+++ +  +
Sbjct: 208 FMDVLLQNSKLKPERFSAI-GYGEYRPVASNDTTAGRAKNRRVEVSIIRK 256


>gi|187779120|ref|ZP_02995593.1| hypothetical protein CLOSPO_02715 [Clostridium sporogenes ATCC
           15579]
 gi|187772745|gb|EDU36547.1| hypothetical protein CLOSPO_02715 [Clostridium sporogenes ATCC
           15579]
          Length = 254

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 9/151 (5%)

Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            K+I S L   +        V       G+ I I D     +F+   +  L ++  +L +
Sbjct: 91  MKEIKSNLEKEIKKSGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSSALLTQ 147

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312
           I ++L      I I GHTD  P  N   R NW LS  RA +    L    G+  +++  I
Sbjct: 148 ISKMLKGLDNNIKITGHTDNKPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPANKL-SI 206

Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVEDR 341
             +  +  K  +      + NRR++I +  +
Sbjct: 207 QAYGEYMPKFDNATEVGRAKNRRVEIAIVRK 237



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K       +   +W I Y+D +T+L+A F+VM+ ++  D    +   Q FN     +  A
Sbjct: 2   KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
              +  E      S        +        + +K   +N +K+ ++ 
Sbjct: 58  GSNVVQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSNLEKEIKKS 105


>gi|229019729|ref|ZP_04176535.1| OmpA/MotB domain protein [Bacillus cereus AH1273]
 gi|229025955|ref|ZP_04182345.1| OmpA/MotB domain protein [Bacillus cereus AH1272]
 gi|228735356|gb|EEL85961.1| OmpA/MotB domain protein [Bacillus cereus AH1272]
 gi|228741574|gb|EEL91768.1| OmpA/MotB domain protein [Bacillus cereus AH1273]
          Length = 234

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 12/198 (6%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T + E   D   + + E S +  E        + +    K    L+ L KKI   ++   
Sbjct: 38  TGNKEFLSDQKPNDEKELSASSLEVEQARKQEEARAEEKKEMAELKALQKKIDQYINE-- 95

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266
            + +      + T  G++++I++     +FD   +    E++ + +++  +L + S   I
Sbjct: 96  -NQLSSAFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKELSNLLVSASPREI 151

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324
           ++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G+  +R    +
Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSTI-GYGEYRSIAPN 210

Query: 325 DPMN--SANRRIDILVED 340
           D     + NRR+++ +  
Sbjct: 211 DTQEGKAKNRRVEVFILP 228


>gi|121997146|ref|YP_001001933.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121588551|gb|ABM61131.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 246

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +N  Y   ++             +  +      DLE      E      L          
Sbjct: 40  DNERYQKLAESLRQVLGPSVVQEDTPQAAPTVVDLEGPAPTPEQEVHDDLPPADPEHTDT 99

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            + L+ L + ++  L+          V       G+L+          F   S       
Sbjct: 100 AEILEALQEALAEELA-------AGDVELGEGEDGVLLRF---PEQAAFALGSKEISEPF 149

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
           + VL ++  VLA +  +I + GHTD  P R+   R N+ LS  RA S   +L  +G++ +
Sbjct: 150 VPVLDRVAGVLADTPGLIRVSGHTDDIPIRSDRFRSNFELSTARAISVVHILKDAGITPE 209

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           R+    G    R    ++     + NRR+D+ + D
Sbjct: 210 RLIA-QGHGETRPLAPNETPEQRARNRRVDVHLVD 243


>gi|154685777|ref|YP_001420938.1| flagellar motor protein MotB [Bacillus amyloliquefaciens FZB42]
 gi|154351628|gb|ABS73707.1| MotB [Bacillus amyloliquefaciens FZB42]
          Length = 261

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               ++ L+ + K+++  +       +   +  + T+ G+LI+I D      FD   +  
Sbjct: 99  EAADREELEGVQKQVNQFIKN---KKLETQLETKLTKEGLLITIKDS---IFFDSGRADI 152

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             E I + ++I  +L  +    I I GHTD  P +N     NW LS+ RA +   +L ++
Sbjct: 153 RQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIKNSQYQSNWHLSVMRAVNFMAILTEN 212

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
              + ++    GF  ++  +++      S NRR+++L++ R  
Sbjct: 213 PKLDAKVFSAKGFGEYKPAVSNKTAEGRSKNRRVEVLIQPRNA 255



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK    D  +   SW I YAD +T+L+A F+V++ +++ D    + + + FN       
Sbjct: 3   RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58

Query: 78  TASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           T   G+ +  +  PPE        L  D+   K     +  + ++++     +    ++ 
Sbjct: 59  TGGTGVLEYSSVTPPENEKDGVDQLKKDKEKDKEQKKKEREAADREELEGVQKQVNQFIK 118

Query: 136 NSQQSEHCKNSLTRDS 151
           N +     +  LT++ 
Sbjct: 119 NKKLETQLETKLTKEG 134


>gi|251772419|gb|EES52986.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum
           ferrodiazotrophum]
          Length = 285

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 205 GLVADNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
            LV +        +  +   GI I I   +   +F    +    + I VL+ I  +L+ +
Sbjct: 92  QLVQEKSSSHGAMKVVQSSEGIRIQI---QAAFLFRTGHAAVRKQAIPVLKNIAALLSKT 148

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321
              I + GHTD  P     ++NW LS  RA +    L+  + +   R +  +G+  +R  
Sbjct: 149 KRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVLTTLIALAPIDPSR-ASAAGYGQYRPL 207

Query: 322 IASD--PMNSANRRIDILVEDRQG 343
           + +        NRR++I+V   + 
Sbjct: 208 VPNTSAENRQKNRRVEIVVLKEKA 231



 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 78/251 (31%), Gaps = 13/251 (5%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMT 78
           K    +   NL  W + YADF+T+L  FF++M+ I+A +    K +       F    +T
Sbjct: 3   KKVKHEEHENLERWLVSYADFITLLFTFFVMMYAISAVNTGKYKVLSNAIVATFTHKTVT 62

Query: 79  ASKGIFDEQNPPERSSQNK----IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           A   +    N       +     +     + + + S         Q  +  R++    +L
Sbjct: 63  AHMHVIIPHNRVTPGKASPKVRTVLFRAMQLVQEKSSSHGAMKVVQSSEGIRIQIQAAFL 122

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK---- 190
             +  +   K ++         L K+    +     +N  +    K        +     
Sbjct: 123 FRTGHAAVRKQAIPVLKNIAALLSKTKRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVL 182

Query: 191 ----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                L  +    +S         +V     E  +    + I+  +        S  P+P
Sbjct: 183 TTLIALAPIDPSRASAAGYGQYRPLVPNTSAENRQKNRRVEIVVLKEKAPESLPSPSPVP 242

Query: 247 ETIVVLQKIGE 257
                ++ I  
Sbjct: 243 AVNSPIENIAP 253


>gi|300023960|ref|YP_003756571.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525781|gb|ADJ24250.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 342

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 106/305 (34%), Gaps = 29/305 (9%)

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERS----SQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           I QYF+    +   ++      Q     S     + K   S DE     +    + + N+
Sbjct: 39  IAQYFSAEEASGKDSALKRLTRQISELTSMLSLEKGKAQSSQDELAALQATLSSLKTENE 98

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K     L  +    S   +     + L        +     DL           +  LS 
Sbjct: 99  KLTGVGLGADERAKSAEDKLAGLSSDLQSQKNISDEALSKVDLLNQQLIALRRQIAGLSD 158

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN------ 233
               A K+        K + + L+  +A  + +   + +   G +   + D+++      
Sbjct: 159 ALDAAEKKGAESDKTIKDLGARLNAALAQQVQELKRYRSDFFGRLRELLKDRKDIRVVGD 218

Query: 234 ------TPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVI----SIRGHTDASPFRN 279
                   +F   S+   PE +  + +I E +          I     I GHTDA P  N
Sbjct: 219 RFVFESEVLFSSGSASLTPEGMAAMDQIAEAILELQKEIPGDIDWALQINGHTDARPISN 278

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
                NW LS  RA S  + L+  GV  DR+   +G+   +   AS+   +   NRRI++
Sbjct: 279 PQYPSNWELSTARAASVVKYLVLRGVPADRLVA-AGYGEFQPVDASNTEEAYQRNRRIEL 337

Query: 337 LVEDR 341
            +  R
Sbjct: 338 KLTSR 342


>gi|161521534|ref|YP_001584961.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189352297|ref|YP_001947924.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
 gi|160345584|gb|ABX18669.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189336319|dbj|BAG45388.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616]
          Length = 219

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
               ++ + ++ L A      +       GI I I       +F    +  LP+ + VL+
Sbjct: 73  QAPARVPAWVAQLDALKAGGRISLVQAPHGIEIGI---DAGILFHVGDAHLLPDALPVLE 129

Query: 254 KIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +I + L  H+   I + GHTD+ P  N     NW LS  RA +  + L + G++  R++ 
Sbjct: 130 RIAQALGPHAAGDILVEGHTDSVPIANAKYESNWELSSARAGAVVRYLAERGIAPHRLAA 189

Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILV 338
           + G A  +  +A D     + NRR+ I V
Sbjct: 190 V-GRADTQPLVAGDDASSRARNRRVTIFV 217



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
          +   D      G W I YAD +T LM  FL ++++ 
Sbjct: 9  RDDEDAEGTQSGRWLISYADLITTLMVLFLALYVLQ 44


>gi|254251112|ref|ZP_04944430.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158]
 gi|124893721|gb|EAY67601.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158]
          Length = 431

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                + E  +    ++RL    +++   LS L+ D I +GVL          SI+  + 
Sbjct: 267 LTERHALEARILEIGRERLASAPQRLR--LSQLLRDEIARGVLTVDEDE--RRSIVVFKG 322

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
             MF    S  LP    +L K+   +A     + + GHTD  P R+ A  +N  LS  RA
Sbjct: 323 DSMFASGQSTVLPGIEPILDKVAREVARVGGTVLVTGHTDNQPIRSAAFANNLALSEKRA 382

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
               Q+L + G   +RI  + G    +     A+    + NRR++I+V
Sbjct: 383 AYVAQILQRDGTPAERIRAV-GKGDTQPVGDNATAAGRALNRRVEIMV 429


>gi|158320524|ref|YP_001513031.1| OmpA/MotB domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140723|gb|ABW19035.1| OmpA/MotB domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 254

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 12/167 (7%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L   ++  L++  +   +  S L   ++   VL      G+++   D     +FD   + 
Sbjct: 85  LTAGQRNELENFRELQETLESYLQEYDLETEVLVSQESRGLMLRFQDN---VLFDPGKAE 141

Query: 244 PLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298
             P +  +LQ I E L       + I + GHTD       +I   NW LS  RA +  + 
Sbjct: 142 LKPRSKEILQDIAEFLRSPELKDKDIRVEGHTDTVKVNPTSIYPTNWELSTGRASNVVRY 201

Query: 299 LMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            ++   +  +R   I+G+  ++    +D     S NRR+DI++   +
Sbjct: 202 FIEEIDMDPERF-SIAGYGEYQPIAPNDTVENKSKNRRVDIVILRSE 247


>gi|150388139|ref|YP_001318188.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948001|gb|ABR46529.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 6/182 (3%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           T     ++ E    L        L    +    DL +   + +  L  ++++  V     
Sbjct: 58  TSEVADLSDENQRLLEEKESLAALLFGLEDIELDLVQSQETFIRFLRENHLLDRVDVIEE 117

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279
             G++I   D     +F    +    E  ++L  +   L      I I G TD  P   N
Sbjct: 118 ERGLVIRFRDS---VLFGSGQARISQEGYMLLDHVTAKLRTIDNAIVIEGFTDNIPIQTN 174

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
               NW LS+ RA    + ++     E+    +SGF   +   ++  +   + NRRI+I 
Sbjct: 175 EFPSNWELSVARAIGVARYMIDEEYIEESRISVSGFGEQQPIDSNETNEGRANNRRIEIT 234

Query: 338 VE 339
           + 
Sbjct: 235 IL 236


>gi|91224571|ref|ZP_01259832.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01]
 gi|91190459|gb|EAS76727.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218
           S +L K+ N+  +  +  +  +++      +     +A+KIS  L+  +   +   +  E
Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277
             +  + IS+  Q    +F+  S+  +     V+ K+   L  +   I + GHTD  P  
Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            +    NW LSL RA +  + L+ +   E R+    G    R  +  +SD   + NRRI+
Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423

Query: 336 ILVE 339
           I + 
Sbjct: 424 IDLL 427


>gi|90021803|ref|YP_527630.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89951403|gb|ABD81418.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 288

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                 L+ + +++   LSG++A      V     +  + I I        F    + P 
Sbjct: 73  EAEVAPLKQIEQQLEQALSGVLATG---EVTLNGNQNWVEIVI---DANSFFSSGQATPS 126

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304
            E   VL K+ ++++     +++ GHTD +P  N   ++NW LS  RA +   +L  +GV
Sbjct: 127 DEARTVLNKVADIISPFDNAVAVGGHTDDTPINNAQFKNNWELSSARAVTVVNLLAFAGV 186

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           S +R+S + G+  +R    +      SANRR+ + V   + 
Sbjct: 187 SPERMSAV-GYGEYRPIADNQTPEGRSANRRVVLRVARDRA 226



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQ 87
           N   W + YADF+T+L AFF+VM+ ++  ++   + + +   N F  +    +K    + 
Sbjct: 12  NHERWLVSYADFITLLFAFFVVMYSVSQVNETKYRTLSETLGNAFSSSAKKTNKNRSPDT 71

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
              E +   +I+  +++ ++      ++     +   + + +   + S+ Q + 
Sbjct: 72  TEAEVAPLKQIEQQLEQALSGVLATGEVTLNGNQNWVEIVIDANSFFSSGQATP 125


>gi|269967472|ref|ZP_06181529.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B]
 gi|269827913|gb|EEZ82190.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B]
          Length = 430

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218
           S +L K+ N+  +  +  +  +++      +     +A+KIS  L+  +   +   +  E
Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277
             +  + IS+  Q    +F+  S+  +     V+ K+   L  +   I + GHTD  P  
Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            +    NW LSL RA +  + L+ +   E R+    G    R  +  +SD   + NRRI+
Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423

Query: 336 ILVE 339
           I + 
Sbjct: 424 IDLL 427


>gi|308066932|ref|YP_003868537.1| chemotaxis motB protein (Motility protein B) [Paenibacillus
           polymyxa E681]
 gi|305856211|gb|ADM67999.1| Chemotaxis motB protein (Motility protein B) [Paenibacillus
           polymyxa E681]
          Length = 275

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 12/224 (5%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
             ++ E     LS +          +  +   + +    + E+     ++        +K
Sbjct: 42  DAKKFETMAQSLSAAFNGGTGVLDHSAANPSSQSMDMGKNKEQVSQPVKSKATSTSELQK 101

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            LA + ++ L+ L K++   +     + +   +  +  ++ ++I+I D     +F    +
Sbjct: 102 QLAQREEEDLKKLKKQMDQYIQN---NGLTPLLNTKLNQSQLMITISDN---ALFSSGQA 155

Query: 243 IPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300
              PE   + + I  +L       + + GHTD  P  N     N+ LS  R+ +  ++L+
Sbjct: 156 EVKPEARKLAKSISSMLQQFPGYDVIVSGHTDNVPISNSQFPSNFDLSAKRSLNFLRILL 215

Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            +  +   +   I G+  +R   ++      S NRR++I V  +
Sbjct: 216 LNPDLDPTKFVSI-GYGEYRPLASNQDGQGRSKNRRVEISVLRK 258


>gi|225382176|gb|ACN89316.1| hypothetical protein VEPGS_0610 [Vibrio alginolyticus]
          Length = 430

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218
           S +L K+ N+  +  +  +  +++      +     +A+KIS  L+  +   +   +  E
Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277
             +  + IS+  Q    +F+  S+  +     V+ K+   L  +   I + GHTD  P  
Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            +    NW LSL RA +  + L+ +   E R+    G    R  +  +SD   + NRRI+
Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423

Query: 336 ILVE 339
           I + 
Sbjct: 424 IDLL 427


>gi|26991025|ref|NP_746450.1| flagellar motor protein MotD [Pseudomonas putida KT2440]
 gi|24986055|gb|AAN69914.1|AE016630_5 flagellar motor protein MotB [Pseudomonas putida KT2440]
          Length = 285

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             +   S+   E         E  LA      L+ ++  +      L+  +         
Sbjct: 69  GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSD-----QMTV 123

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
               + I I +  ++ +F    ++P  +   +++K+  +L      + + G TD  P R 
Sbjct: 124 RGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIEKVASILKPFANPVHVEGFTDNLPIRT 182

Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA S  ++L   GV+  R++ + G+  ++   ++D     + NRR+ +
Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTAEGRARNRRVVL 241

Query: 337 LV 338
           ++
Sbjct: 242 VI 243



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q         
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 +    N PERS    I +  ++ ++    +  +  + Q +      N     + 
Sbjct: 52  ------LLGVFNDPERS-MKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTI 104

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S         L        D       E  I  E N  L   S + + + K    ++ +A
Sbjct: 105 SDDVRDAFGDLIN-----SDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159

Query: 197 KKISSTLSGLVADNIVKGVLFET 219
             +    + +  +     +   T
Sbjct: 160 SILKPFANPVHVEGFTDNLPIRT 182


>gi|120437856|ref|YP_863542.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117580006|emb|CAL68475.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 320

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 23/314 (7%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           +T ++A  ++M   +         +E       +   + +K + + +   E   +    L
Sbjct: 5   LTSVLALLVLM--SSCVSSKKYGELESKNANLQRENRSVAKELENYRKSSEDLDKELSGL 62

Query: 101 SID-EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
             D E IT     L    T  +K Y+ LE +   L  +  +   +NS        +DL  
Sbjct: 63  KTDYETITTERNQLMEKLTALEKNYESLEKSYDALEQNSSAAIAENSRQN-----RDLLG 117

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFE 218
             D +++   +E   L  L K+  L   R +R+ DL   I++  + + A  N V   L  
Sbjct: 118 QLDEKEAALLQEKNRLEKLEKDLAL---RSQRINDLENVIAAKDAKMNALKNAVSNALTN 174

Query: 219 TTRTGILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
               G+ +   D        N  +FD  S     E    +Q++G VL  + ++ + I GH
Sbjct: 175 FEGKGLSVEQRDGKVYVSMENKLLFDSGSWAVNSEGRKAVQQLGTVLGQNPDIAVLIEGH 234

Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328
           TD  P+      +DNW LS  RA +  Q+L ++   + +    +G   +    ++D    
Sbjct: 235 TDNVPYGGSGQLKDNWDLSTKRATAIVQILRENSNIDPQSLTAAGRGEYAPVGSNDTEAG 294

Query: 329 -SANRRIDILVEDR 341
            + NRRI++++  +
Sbjct: 295 KAKNRRIEVILTPK 308


>gi|87119461|ref|ZP_01075358.1| flagellar motor protein [Marinomonas sp. MED121]
 gi|86164937|gb|EAQ66205.1| flagellar motor protein [Marinomonas sp. MED121]
          Length = 281

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 13/234 (5%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             I   NQ       E     +   Q S    N     + K +D       E + ++  +
Sbjct: 49  YSISLKNQGDSKLLTETLEGVMQAVQLSVQPINIGKVTTGKAED---EAFQELTPDRGSD 105

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
               P    + +  K+ + +Q+L + I + L     + +          + + I I + +
Sbjct: 106 PSPSPQQNIQTVVDKKLQVVQELNQMILTHLGEYQQNGL-----ISINESELWIEI-ELK 159

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
              +F         E + VL  I EVL   +  I + GHTD  P  +     NW+LS  R
Sbjct: 160 AGLLFSSGEFELTNEAVAVLMSISEVLKRYSYPIVVEGHTDNLPVSSNKYTSNWQLSSAR 219

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           A S    L+  G++  ++  + G +  + K+  ++D   + NRR+ + +  ++ 
Sbjct: 220 ASSVVDELVNGGINP-QLIAVLGLSSEKPKVRNSNDFSRARNRRVTLKIGKQEA 272


>gi|229141242|ref|ZP_04269781.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
 gi|229198660|ref|ZP_04325361.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228584819|gb|EEK42936.1| OmpA/MotB domain protein [Bacillus cereus m1293]
 gi|228642283|gb|EEK98575.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+               +       K+   A  +++ + +L  
Sbjct: 24  KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 83

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +  + +      + T  G+ ++I++     +FD   +    E++ + +++  
Sbjct: 84  VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 140

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S + G
Sbjct: 141 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 199

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 200 YGEYRSIAPNDTQEGKAKNRRVEVFILP 227


>gi|327404103|ref|YP_004344941.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319611|gb|AEA44103.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 14/275 (5%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
            G   +++ K I+    P     +    L        +         +  +Q   +   +
Sbjct: 15  IGIMAVSSCKPIYTCGEPIPEKKKGGKRLQAVVAERDSLCTTLADQKSANEQLTAVNKQL 74

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                + Q +        +S+  +   K  DL+      +         + I+A     R
Sbjct: 75  TDDKKNLQIKLSGQENLTESQLAQLSQKDKDLQNKDQDLQEKERMLREMQAIIA-----R 129

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             +L KK++ TL   +       +  E     + +S+ D     +F   S+   P+ +  
Sbjct: 130 QDELTKKLNQTLRDALVGFNSDELTMEIRDGKVYVSMSD---KLLFKSGSTGVEPKGVEA 186

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKSGVSEDR 308
           L+ + +VL  + +  I + GHTD  P +    +DNW LS+ RA S  ++L  K  V+  R
Sbjct: 187 LKVLADVLNKNPDIQILVEGHTDNVPIKTAVFKDNWDLSVARATSITRMLNEKYAVAATR 246

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           ++  SG   +  K ++D     + NRR +I++  +
Sbjct: 247 MTA-SGRGEYFPKASNDTTEGKAKNRRTEIILSPK 280


>gi|153008534|ref|YP_001369749.1| hypothetical protein Oant_1203 [Ochrobactrum anthropi ATCC 49188]
 gi|151560422|gb|ABS13920.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 343

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 115/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + +S + +                       + SE         +     
Sbjct: 79  MQDTIANLQASLSSTESERSRLQSLLNEGSGAGAAAEKRAGELSESLDAEKQVSARALSQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQISALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVL 259
             G L E       I I+      ++  +F   S+   P     ++K+         E+ 
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSADINPAGQDEMKKLADAVIQLNQEIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLTGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
           ++   ASD  ++   NRRI++ + +R
Sbjct: 318 YQPLDASDTADARSKNRRIELKLTER 343


>gi|170736167|ref|YP_001777427.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169818355|gb|ACA92937.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279
             G+ I I       +F+   +  LP++  VL +I + L AH+T  I + GHTD+ P  N
Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIAN 160

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
                NW LS  RA S  + L + GV+  R++ I G A  +  +A       + NRR+ I
Sbjct: 161 AKYESNWELSSARAGSVVRYLSERGVAPHRLAAI-GRADTQPLVAGGDAGSRARNRRVTI 219

Query: 337 LV 338
            V
Sbjct: 220 FV 221



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
          +   +      G W I YAD +T LM  FL ++++ 
Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQ 48


>gi|91781366|ref|YP_556573.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans
           LB400]
 gi|91694026|gb|ABE37223.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans
           LB400]
          Length = 230

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K++ S L+ L  ++    +    T   + I+I       +F+   +  LPE+  VLQ+I 
Sbjct: 90  KQLLSLLAPLRDNH---RITISQTPQAVEIAI---NARILFNSGDARLLPESFAVLQQIA 143

Query: 257 EVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            VL   +   I + GHTD+ P        NW LS  RA +  +     G+   R++ I G
Sbjct: 144 AVLRDRAKNNILVEGHTDSLPISTAKYESNWELSSARAGAVVRFFADRGIEGHRMAAI-G 202

Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339
            A +   I  +    N+ANRR+ ILVE
Sbjct: 203 RADNFPLIIGNDAVANAANRRVTILVE 229



 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          +    D+  +   W I YAD +T LM  FL ++++    +   +
Sbjct: 17 RDESHDSGAHPDRWLISYADLITTLMVLFLALYVLELAKNSELQ 60


>gi|168186129|ref|ZP_02620764.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund]
 gi|169295847|gb|EDS77980.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund]
          Length = 242

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            +N+   V  +    G+++ +   +   +FD   +     +  +L KI E++      + 
Sbjct: 104 KNNLDGTVQVKKDARGVILEL---KENILFDSGQADIKSSSKEILDKISELIKSVPNGVV 160

Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325
           I GHTD  P  N     NW LS  RA +  +  + + G   +++ + +G+  +     +D
Sbjct: 161 IEGHTDNVPIHNSKYDSNWELSTQRAVNVLKYFVVNKGEKPEKL-QAAGYGEYHPIAKND 219

Query: 326 PM--NSANRRIDILV 338
                + NRR++IL+
Sbjct: 220 TYADRAKNRRVNILI 234



 Score = 37.2 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++  I         W   YAD +T+L+ FF++++  ++ D    K +   F       
Sbjct: 1   MSRRKKIQQGEGGGEEWLQTYADTITLLLTFFVLLYASSSIDAVKFKQMSSSFQNVFSG- 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
            + S  I D     E       +    +  + N
Sbjct: 60  -SNSNSILDFNASGEAPIVGPPEEMGSKAGSGN 91


>gi|229105135|ref|ZP_04235786.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
 gi|228678316|gb|EEL32542.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28]
          Length = 233

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+        +      N       K+   A  +++ + +L  
Sbjct: 24  KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSANSLESEQIKKNAEAEVKQQEMNELKA 83

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +    +      + T  G++++I++     +FD   +    E++ + +++  
Sbjct: 84  VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S I G
Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-G 199

Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 200 YGEYRSIAPNDTPEGKAKNRRVEVFILP 227


>gi|229062194|ref|ZP_04199517.1| OmpA/MotB domain protein [Bacillus cereus AH603]
 gi|229169237|ref|ZP_04296950.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228614220|gb|EEK71332.1| OmpA/MotB domain protein [Bacillus cereus AH621]
 gi|228717088|gb|EEL68766.1| OmpA/MotB domain protein [Bacillus cereus AH603]
          Length = 233

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+       ++      +       K+   A  +K+ + +L  
Sbjct: 24  KQMAVAFRSELAGGTGNKEFLSDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKA 83

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +    +      + T  G++++I++     +FD   +    E++ + +++  
Sbjct: 84  VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++ S I G
Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-G 199

Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 200 YGEYRSIAPNDTPEGKAKNRRVEVFILP 227


>gi|288573018|ref|ZP_06391375.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568759|gb|EFC90316.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 240

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +   LP        A + +++ Q   +      S L    + + V     + G+ +S+ D
Sbjct: 66  QEDPLPYGGSSGYDAGEERRQTQSTFQVDRELRSFLKDQEMEQDVSVIVDQRGVTVSLSD 125

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSL 289
           Q    +F        PE   +L K+GE L      +++ GHTD  P R    RDNW LS 
Sbjct: 126 Q---LLFPLGGVDIRPEGKRLLAKLGEFLKGRIPALAVEGHTDDRPLRGGPYRDNWGLSA 182

Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            RA      L+  +G+S   I +  G+   R  + +  D   S NRR+D+++  +
Sbjct: 183 IRAAIVASYLVDAAGISPS-IVQAVGYGPFRPVVPNDSDENRSRNRRVDLVILSK 236


>gi|303239756|ref|ZP_07326280.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592693|gb|EFL62417.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
          Length = 277

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
                     G  +      E S+   EEN     +S  K    K  ++++++   I   
Sbjct: 57  SGGAGMMEGDGNSVIPLVKNESSVGTSEENSNDITVSTTKSNETKEDEKMKEIKDNIEKE 116

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +S     N +K VL      G+ ISI D     +F+   +    E   +L K+  ++   
Sbjct: 117 ISEEGYSNNIKLVL---DSEGLEISIQD---VVLFNTGEADIKKEVYPLLLKLTGIIKGL 170

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              I + GHTD  P  N   R NW LS  RA +    +   G        I      + K
Sbjct: 171 NNSIKVVGHTDNVPIHNDKFRSNWDLSSFRAINVMSFMRDQGKLRPEKFSIQACGEFKPK 230

Query: 322 --IASDPMNSANRRIDILVED 340
              +++   + NRR++I +  
Sbjct: 231 YDNSTEEGRAKNRRVEIYIVR 251



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 4/143 (2%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
             +    +   +W + Y+D MT+L+A F+VM+ ++ TD+   K + + F+       +  
Sbjct: 4   KKVHHEEHADETWLLPYSDMMTLLLALFIVMFAMSKTDNAKMKEMSEQFSIV----FSGG 59

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+ +                       N + +    +N+ K+ ++++     +      
Sbjct: 60  AGMMEGDGNSVIPLVKNESSVGTSEENSNDITVSTTKSNETKEDEKMKEIKDNIEKEISE 119

Query: 141 EHCKNSLTRDSEKGKDLCKSTDL 163
           E   N++    +         D+
Sbjct: 120 EGYSNNIKLVLDSEGLEISIQDV 142


>gi|125974911|ref|YP_001038821.1| OmpA/MotB [Clostridium thermocellum ATCC 27405]
 gi|281418623|ref|ZP_06249642.1| OmpA/MotB domain protein [Clostridium thermocellum JW20]
 gi|125715136|gb|ABN53628.1| OmpA/MotB [Clostridium thermocellum ATCC 27405]
 gi|281407707|gb|EFB37966.1| OmpA/MotB domain protein [Clostridium thermocellum JW20]
          Length = 266

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 121/329 (36%), Gaps = 73/329 (22%)

Query: 19  KKVAIDDTPNNLGS--WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K   DD P + G+  W   Y+D +T+++ FF++  + + +    +K     F     +L
Sbjct: 5   RKQLTDDEPASEGAPEWLQTYSDMVTLVLTFFVL--LFSMSTISKEK-----FEQLSSSL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G    +      +   +  S+ E+ T + ++                        
Sbjct: 58  SAAFMG--TGRGGVYGYNDGTVLYSVKENTTGDILE------------------------ 91

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                    D E++ N+ ++  +   +     A K  ++++D  
Sbjct: 92  -------------------------DGEEAFNEGKSAEIGAFTGGN--ADKEAQKIEDFI 124

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++ + +  +  D  VK +        + + +    +  +FD   +         L+KIG
Sbjct: 125 NEVQNIVEEMDLDEYVKVI---EDDKSLTVRM---NSVILFDLGKADIKEPGKETLRKIG 178

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            ++    +   I+GHTD  P    +   NW LS  RA +    L+   GV   +++  +G
Sbjct: 179 TLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLVDECGVDPVKLTA-TG 237

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               R    +D       NRRIDI++E +
Sbjct: 238 NGEFRPIAPNDTEENRQKNRRIDIVIEKQ 266


>gi|149376619|ref|ZP_01894379.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149359137|gb|EDM47601.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 260

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 8/174 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  + +  + + +              + A  R + L+ +A +++     L+   +   V
Sbjct: 71  DQSRRSTPQAAEDVINPPVTEAPQNPSMNAEGRTEALRAMADQLALEFDELINQGV---V 127

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
             ET+   + +S+   RN+ +F    + P  +   V++KI  VL +    I + G TD  
Sbjct: 128 TLETSDEWLELSL---RNSLLFGSGDAEPHYDAFDVVEKIAAVLRNRDNAIRVEGFTDNR 184

Query: 276 PF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           P   +    NW LS  R+ +  ++L   GV  +R++ + G+  H+    +D   
Sbjct: 185 PINTSAFPSNWELSAARSAAVVRMLSMEGVEAERLAAV-GYGEHQPVARNDTEE 237



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83
           DD  +N   W I YADF+T+L AFF+VM+ +++ ++   K + +           + + I
Sbjct: 8   DDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLTGVFNAPQRSFQPI 67

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
                    + Q   D+ I+  +T+   +  + +  + +  + + + +    + 
Sbjct: 68  EVGDQSRRSTPQAAEDV-INPPVTEAPQNPSMNAEGRTEALRAMADQLALEFDE 120


>gi|78223750|ref|YP_385497.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78195005|gb|ABB32772.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 292

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 12/243 (4%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-TDLEKSI 167
             +  + G+   +    R E         +     K        K   L +S  DL + +
Sbjct: 50  QKLSAENGALKAQLAKVREEAAGLAKEKEKLGADNKELEQVLRAKTDTLSQSVADLRQKV 109

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
              E       ++       R++++++++K     L  +  +     V     +  + ++
Sbjct: 110 TDLETENTRLKAEIAETRKAREEKVREVSKTYEDLLDRMKGEIAQGQVTISELKGKLTVN 169

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN----IAR 282
           ++D     +FD   +      + VL K+ ++L    +  I I GHTD             
Sbjct: 170 MVD---AILFDSGKAEVKQGGMEVLAKVVDILKGVQDKMIRIEGHTDNVQIVGNLTKRFP 226

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
            NW LS  RA +  + L   G+    +  ++    +R   ++D     + NRRI+I++  
Sbjct: 227 TNWELSAARAINVARYLQGQGIDPTVLVAVA-NGEYRPVASNDTEEGRAKNRRIEIVLVP 285

Query: 341 RQG 343
           R  
Sbjct: 286 RDA 288


>gi|170722824|ref|YP_001750512.1| flagellar motor protein MotD [Pseudomonas putida W619]
 gi|169760827|gb|ACA74143.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 285

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 10/182 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             +   S+   E         +  LA      L+ ++  +      L+       +    
Sbjct: 69  GDEQPLSVKPAEPLIKDSEQTDAGLAQNSVDPLKTISDDVRDAFGDLIK---SDQMTIRG 125

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
               + I +    ++ +F    ++P  +   +++K+  +L      + + G TD  P R 
Sbjct: 126 NELWVEIEL---NSSLLFGSGDAMPSDKAFDIIEKVANILKPFANPVHVEGFTDNLPIRT 182

Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA S  ++L   GV+  R++ + G+  ++    +D     + NRR+ +
Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVVL 241

Query: 337 LV 338
           ++
Sbjct: 242 VI 243



 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q     FN  
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
            +++     G     +        K     D  + +NSVD     ++  +  
Sbjct: 60  ERSMKPIPIGDEQPLSVKPAEPLIKDSEQTDAGLAQNSVDPLKTISDDVRDA 111


>gi|262395314|ref|YP_003287167.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
 gi|262338908|gb|ACY52702.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25]
          Length = 430

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           IS  +S  +A  I KG++  E  +  + IS+  Q    +F+  S+  +     V+ K+  
Sbjct: 287 ISERISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L  +   I + GHTD  P   +    NW LSL RA +  + L+ +   E R+    G  
Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSTLEGRVIP-EGLG 402

Query: 317 HHRLKI--ASDPMNSANRRIDILVE 339
             R  +   SD   + NRRI+I + 
Sbjct: 403 DARPLVENNSDENRAINRRIEIDLL 427


>gi|328553736|gb|AEB24228.1| flagellar motor protein MotB [Bacillus amyloliquefaciens TA208]
          Length = 265

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                 L   S    +  K    +   +K++        K+K      ++ L+ + K+++
Sbjct: 59  TGGTGVLEYSSVTPPENEKDGIDQLKKDKDKEKEKDKEQKKKEREAADRQELEGVQKQVN 118

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +       +   +  + T+ G+LI+I D      FD   ++   E I + ++I  +L 
Sbjct: 119 QFIKN---KKLEHQLETKLTKEGLLITIKDS---IFFDSGQAVIRQEDIPLAKEISNLLV 172

Query: 261 HSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
            +    I I GHTD  P +N     NW LS+ RA +   +L ++   + ++    GF  +
Sbjct: 173 LNPPRNIIISGHTDNVPIKNSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEY 232

Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343
           +   ++      S NRR+++L++ R  
Sbjct: 233 KPAASNKTAEGRSKNRRVEVLIQPRNA 259



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 17/204 (8%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +KK    D  +   SW I YAD +T+L+A F+V++ +++ D    + + + FN       
Sbjct: 3   RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T   G+ +  +     ++            K+ +D      +++K+  + +      +  
Sbjct: 59  TGGTGVLEYSSVTPPENE------------KDGIDQLKKDKDKEKEKDKEQKKKEREAAD 106

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q             K K L    + + +           +  +   A+ R++ +  LAK
Sbjct: 107 RQELEGVQKQVNQFIKNKKLEHQLETKLTKEGLLITIKDSIFFDSGQAVIRQEDIP-LAK 165

Query: 198 KISSTLSGLVADNIVKGVLFETTR 221
           +IS+ L      NI+     +   
Sbjct: 166 EISNLLVLNPPRNIIISGHTDNVP 189


>gi|239832801|ref|ZP_04681130.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239825068|gb|EEQ96636.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 343

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 114/326 (34%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++ + +                       + S          +     
Sbjct: 79  MQDTIANLQASLSTAETERSRLQSLLNEGSGAGAAAEKRAGELSASLDAEKQVSARALSQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQISALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
             G L E       I I+      ++  +F   SS   P     ++K+ + +    + I 
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSSDINPAGQDEMKKLADAVNQLNQEIP 258

Query: 267 -------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                   + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
           ++   ASD  ++   NRRI++ + +R
Sbjct: 318 YQPLDASDTADARAKNRRIELKLTER 343


>gi|116619472|ref|YP_821628.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222634|gb|ABJ81343.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 267

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +  K+   +++  + EN   PP    +       K L  L K + S L           +
Sbjct: 74  EAKKAPLSQQTTEERENPTAPPPRPAETHPPDLAKSLDTLQKGLDSELKN-------GKL 126

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  G++IS+   R    F        P ++ +L KI  V+      + + GHTD+ 
Sbjct: 127 QLRLDPRGLIISM---REATFFASGDDAVAPGSLPILTKIAAVVQSLPNPVRLEGHTDSR 183

Query: 276 PFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANR 332
           P   +  R NW LS  R+ +  ++L            ++G+A +     ++     + NR
Sbjct: 184 PIHTSRFRSNWELSAARSIAMLELLRDRFQIPASRMAVAGYAENAPADTNETEEGRAHNR 243

Query: 333 RIDILVED 340
           R+D+++  
Sbjct: 244 RVDLVLLS 251



 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 4/157 (2%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                 P N   W + YADF+T+L AFF+VM+    +D +  +A+           +   
Sbjct: 3   RKKAPEPENHERWLVSYADFITLLFAFFVVMFASTQSDKNKARAVSDSVR----EALEHG 58

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
           +          R         + +  T+   +         + +                
Sbjct: 59  QFSSAISTVLGRGKHEAKKAPLSQQTTEERENPTAPPPRPAETHPPDLAKSLDTLQKGLD 118

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
              KN   +     + L  S          ++   P 
Sbjct: 119 SELKNGKLQLRLDPRGLIISMREATFFASGDDAVAPG 155


>gi|302874600|ref|YP_003843233.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690789|ref|ZP_07633235.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577457|gb|ADL51469.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 236

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235
           P  +  I+  +  ++  + +  + S +  L+  N ++G V       GI I +       
Sbjct: 69  PEGEVPIVGEETPQKDAEKSVDLYSQIQQLIDKNTLQGQVKLTKDERGINIEL---NEKI 125

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD   +    +    L KI E++A    +I I GHTD  P   + ++N  LS  RA S 
Sbjct: 126 LFDSGKAEIKTDFATTLNKISEIIASIGNLIEIEGHTDNVPISGVYKNNRDLSYARANSV 185

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +     G+S++R+ +K  G  +      SD   + NRR++IL+
Sbjct: 186 LEYFASRGISQNRMVTKAYGEWYPIKPNDSDANRAENRRVNILI 229


>gi|116878566|ref|YP_357384.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380]
 gi|114843202|gb|ABA89214.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380]
          Length = 299

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 97/232 (41%), Gaps = 12/232 (5%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q +  +     +   +   +++  +      +   +     T+L + I++ +       
Sbjct: 67  QQLETSRNTAVTLRQDNLRAKADIARLEKILANRSAETGQAMTELRQDIDRLQEEKRHLN 126

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           S+ +   + R+ R+  L       +  L ++     V     +  + +++++     +FD
Sbjct: 127 SQLEQEHLARQARIAQLKTTYDDLVDKLESEIKRGEVTISDLQGRLTVNMVE---KILFD 183

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAY 293
              +   P  + +L++IG +L ++ +  I + GHTD  P      +I R NW LS  RA 
Sbjct: 184 SGKADIKPAGLNILKRIGTILKNTADKSIRVEGHTDNVPISPRLKDIYRSNWELSTARAG 243

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S    L    G+S +R+  + GF  +    ++      + NRRI I++  +Q
Sbjct: 244 SVVHFLQDRLGISGERL-SVCGFGPYMPIASNATAQGRAQNRRIQIVLVPQQ 294


>gi|146307821|ref|YP_001188286.1| flagellar motor protein MotD [Pseudomonas mendocina ymp]
 gi|145576022|gb|ABP85554.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 269

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           EE           +        LQ +A  +      L+       +        I I + 
Sbjct: 70  EERPRTGEPENTSLDDPSADATLQSIASSVREAFGELIQ---SDQLTVRGNEMWIEIELS 126

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288
              ++ +F    ++P  +   +++K+ ++LA     + + G TD  P +      NW LS
Sbjct: 127 ---SSLLFPSGDALPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTSQFPTNWELS 183

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             RA S  ++L   GV   R++ + G+   +     A+    + NRR+ +++
Sbjct: 184 SARAASIVRMLAMDGVDPSRLAAV-GYGEFQPIADNATAEGRARNRRVVLVI 234



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 5/165 (3%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   D   +    W + YADF+T+L AFF+VM+ I++ ++   K + +          
Sbjct: 3   RRRHHEDHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLTGVFNQPD 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
            + K I   +  P        + S+D+     ++     S  +        + +    N 
Sbjct: 61  RSIKPIPVGEERPRTGE--PENTSLDDPSADATLQSIASSVREAFGELIQSDQLTVRGNE 118

Query: 138 QQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              E    +SL   S       ++ D+ + + K    +  P+  E
Sbjct: 119 MWIEIELSSSLLFPSGDALPNNQAFDIIEKVAKILAPYQNPVKVE 163


>gi|256003832|ref|ZP_05428819.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 2360]
 gi|255992170|gb|EEU02265.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 2360]
 gi|316939122|gb|ADU73156.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 1313]
          Length = 266

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 121/329 (36%), Gaps = 73/329 (22%)

Query: 19  KKVAIDDTPNNLGS--WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K   DD P + G+  W   Y+D +T+++ FF++  + + +    +K     F     +L
Sbjct: 5   RKQLTDDEPASEGAPEWLQTYSDMVTLVLTFFVL--LFSMSTISKEK-----FEQLSSSL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A  G    +      +   +  S+ E+ T + ++                        
Sbjct: 58  SAAFMG--TGRGGVYGYNDGTVLYSVKENTTGDILE------------------------ 91

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                                    D E++ N+ ++  +   +     A K  ++++D  
Sbjct: 92  -------------------------DGEEAFNEGKSAEIGAFTGGN--ADKEAQKIEDFI 124

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            ++ + +  +  D  VK +        + + +    +  +FD   +         L+KIG
Sbjct: 125 NEVQNIVEEMDLDEYVKVI---EDDKSLTVRM---NSVILFDLGKADIKEPGKETLRKIG 178

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
            ++    +   I+GHTD  P    +   NW LS  RA +    L+   GV   +++  +G
Sbjct: 179 TLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLVDECGVDPVKLTA-TG 237

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               R    +D       NRRIDI+++ +
Sbjct: 238 NGEFRPIAPNDTEENRQKNRRIDIVIDKQ 266


>gi|88858085|ref|ZP_01132727.1| putative chemotaxis protein [Pseudoalteromonas tunicata D2]
 gi|88819702|gb|EAR29515.1| putative chemotaxis protein [Pseudoalteromonas tunicata D2]
          Length = 321

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 113/323 (34%), Gaps = 66/323 (20%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +++ I    N++  W + YAD+MT++ A F+V++ +  T ++    +             
Sbjct: 5   RQLTISSENNHVERWLVSYADYMTLMFALFVVLYSLAITKEEEFSVLSDSL--------- 55

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
                                          S+ ++     +     + E  +   S   
Sbjct: 56  ------------------------------ESIFVQPEIRTEDGSGVKGEGLLLKNSVES 85

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           +     N++T +    + +    DL     K     L  L++E   A+       +   +
Sbjct: 86  EFNLYGNAITDEERGPELVDGFGDLVNLKKKRLGSPLESLNQELKTALFDHIEAGEAKVE 145

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +                        + I +    +  +F   S++       V++ I E+
Sbjct: 146 LDQ--------------------DWLTIELS---SGLLFGSGSAVATLNAKKVVKDIYEI 182

Query: 259 LAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +      I IRG TD  P  N +   NW+LS+ RA      L + G++  ++  I G+  
Sbjct: 183 VKSVDNYIRIRGFTDDRPINNELFSSNWQLSVARATEMLLQLERLGINPAQM-AIEGYGE 241

Query: 318 HRLKIASDPM--NSANRRIDILV 338
           H    +++     +ANR++ I +
Sbjct: 242 HSPTSSNETEEGRAANRKVVIAL 264


>gi|163789638|ref|ZP_02184076.1| chemotaxis motB protein [Carnobacterium sp. AT7]
 gi|159875170|gb|EDP69236.1| chemotaxis motB protein [Carnobacterium sp. AT7]
          Length = 249

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ E    S+      G+ + + + +  S     +  L    +E            +L
Sbjct: 44  SAEKFEAAAKSMQSAFGGGESMLEGSTVVDSKTDTSDETLEETLEEISEETVDP----EL 99

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K  +  +  L   NI      E  + GI ++I   + + +F   S+I        L  +
Sbjct: 100 LKMYNEVVQFLEDKNITSQASVEYDQDGIYVNI---QESILFGSGSAIIADSGKQTLNDL 156

Query: 256 GEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKIS 313
           GE++      + I G+TD  P +      NW LS  RA S  + L  +  V+  R++   
Sbjct: 157 GELIQKFDNAVVIEGYTDNVPMYNANFSSNWELSTGRALSVLRYLSEERDVNPTRLAA-K 215

Query: 314 GFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           G+  +   + +D     S NRR++I++   Q
Sbjct: 216 GYGEYHPLVPNDSEENRSKNRRVNIVIVYDQ 246


>gi|148546771|ref|YP_001266873.1| flagellar motor protein MotD [Pseudomonas putida F1]
 gi|148510829|gb|ABQ77689.1| OmpA/MotB domain protein [Pseudomonas putida F1]
 gi|313497822|gb|ADR59188.1| Flagellar motor protein MotD [Pseudomonas putida BIRD-1]
          Length = 285

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 10/182 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             +   S+   E         E  LA      L+ ++  +      L+       +    
Sbjct: 69  GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLIN---SDQMTVRG 125

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
               + I +    ++ +F    ++P  +   +++K+  +L      + + G TD  P R 
Sbjct: 126 NELWVEIEL---NSSLLFGSGDAMPSDKAFAIIEKVANILKPFANPVHVEGFTDNLPIRT 182

Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA S  ++L   GV+  R++ + G+  ++   ++D     + NRR+ +
Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTAEGRARNRRVVL 241

Query: 337 LV 338
           ++
Sbjct: 242 VI 243



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I Q         
Sbjct: 1   MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 +    N PERS    I +  ++ ++    +  +  + Q +      N     + 
Sbjct: 52  ------LLGVFNDPERS-MKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTI 104

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S         L        D       E  +  E N  L   S + + + K    ++ +A
Sbjct: 105 SDDVRDAFGDLIN-----SDQMTVRGNELWVEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159

Query: 197 KKISSTLSGLVADNIVKGVLFET 219
             +    + +  +     +   T
Sbjct: 160 NILKPFANPVHVEGFTDNLPIRT 182


>gi|146282902|ref|YP_001173055.1| flagellar motor protein MotD [Pseudomonas stutzeri A1501]
 gi|145571107|gb|ABP80213.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
          Length = 278

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A+ +  T   L+A++    +        I I +    ++ +F    ++P  +   +
Sbjct: 99  LERIAQSMRETFGELIAND---QLTIRGNELWIEIELS---SSLLFPSGDALPNDQAFQL 152

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +LA     + + G TD  P   +    NW LS  RA S  ++L   GV+  R++
Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLPISTDKFPTNWELSAARAGSVVRMLAAQGVNPSRLA 212

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILV 338
            + G+   +     A+    + NRR+ ++V
Sbjct: 213 AV-GYGEFQPVADNATAEGRARNRRVVLVV 241



 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++ A ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K +          +
Sbjct: 1   MARRRAPEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQV 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             + K I   +  P  +     D+S  E +T  +         ++      E     ++N
Sbjct: 60  DRSVKPIPIGEERPRTTEP---DVSQVEDLTGPASGEPTLDPLERIAQSMRETFGELIAN 116

Query: 137 SQQS 140
            Q +
Sbjct: 117 DQLT 120


>gi|330721195|gb|EGG99305.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC2047]
          Length = 307

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +L+ ++ S    LV D     +    + T I IS+    +  +F+  S+    +++ V
Sbjct: 110 LSELSDQVESAFGDLVRDG---EITISGSETWIEISLS---SGLLFNSGSANLNRQSLPV 163

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L++I  +L+     + + G TD  P ++     NW LS  R+ +  ++L +SGV  +R++
Sbjct: 164 LEEISSILSGYENPVHVEGFTDDIPIQSGIFPSNWELSAARSAAVVRLLSESGVEPNRLA 223

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILV 338
            + G+   +   +++       NRR+ ++V
Sbjct: 224 AV-GYGQFQPIASNESAEGRGKNRRVALIV 252


>gi|115373102|ref|ZP_01460404.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|310824354|ref|YP_003956712.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1]
 gi|115369858|gb|EAU68791.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|309397426|gb|ADO74885.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 16/208 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              ++ LT  + +   L +  +  K++N E       L++ K    KR    ++LA+ + 
Sbjct: 75  ATSESRLTASAAERSALERKNEELKALNDELAKNTRRLAEAKEALEKRSAEYENLAQSLK 134

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +S          +     +  + + + D     +F   S+    E    L KI + L 
Sbjct: 135 QEISD-------GKIQLSELQGRMTVQLKD---KILFASGSTRVGKEGQEALAKIADALK 184

Query: 261 HSTEVI-SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                I  + GHTD  P         NW LSL RA +  + L  +GV    +   +G+  
Sbjct: 185 SVQGRIIRVEGHTDDVPTDKNGPFPSNWELSLARAMAVVRALQDAGVDPT-VLSAAGYGQ 243

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343
           ++   A+D     S NRRI+I++  + G
Sbjct: 244 YQPIAANDSAENRSLNRRIEIVLAAKAG 271


>gi|90422320|ref|YP_530690.1| hypothetical protein RPC_0800 [Rhodopseudomonas palustris BisB18]
 gi|90104334|gb|ABD86371.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 341

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 20/324 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D ++ L+   + +  +               +   + L      + D  +  +    N
Sbjct: 19  FVDALSTLVLAIVFLLSVFLVVQFFLSQEVTGKDKALQELNAKLAQLNDLLSLEKLGKLN 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D          S + +               N       + ++   +     +     
Sbjct: 79  LEDQLSQLRAGLASSESERDRIKGLYDGLAGAGNDAAGRAGELNKALDSEKQLSARALAQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +        ++ ++       L   +    + + R+ DL ++++  L+  V +       
Sbjct: 139 VEVLNQQISALRRQLAALEAALDASEQRGKESQSRIADLGQRLNVALAQRVQELSRYRSE 198

Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
           F      IL     I I+       +   FD   +   PE    L K+   L    + I 
Sbjct: 199 FFGRLRAILGNRPDIRIVGDRFVFESEVFFDTGQAQLKPEGRAELDKLASALIDLDKKIP 258

Query: 267 -------SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                   + GHTD  P     + NW LS  RA S  Q L+  GV   R+   +GF   +
Sbjct: 259 AEIAWVLRVDGHTDVRPITGAFKSNWELSSGRAISVVQYLVSLGVPPQRLVA-AGFGEFQ 317

Query: 320 LKIASDPMNS--ANRRIDILVEDR 341
               +    +   NRRI++ + +R
Sbjct: 318 PLDVAATEEAYKRNRRIELKLTER 341


>gi|104782795|ref|YP_609293.1| flagellar motor protein MotD [Pseudomonas entomophila L48]
 gi|95111782|emb|CAK16506.1| flagellar motor protein MotB [Pseudomonas entomophila L48]
          Length = 285

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 10/212 (4%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           +I      Q S+             K +    +   S+   E         +  LA    
Sbjct: 39  SINEGKYKQISQALIGVFNDPERSMKPIPIGDERPLSVKPAEPLIKDSEQTDAGLAQTSA 98

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L+ +   +      L+  N             + + I +  ++ +F  + ++P     
Sbjct: 99  DPLKTITDDVHDAFGDLIKSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDVAF 152

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDR 308
            +++K+ ++L      + + G TD  P R      NW LS  RA S  ++L   GV+  R
Sbjct: 153 EIIEKVAKILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPAR 212

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           ++ + G+  ++    +D     + NRR+ +++
Sbjct: 213 MASV-GYGEYQPVAGNDTADGRARNRRVVLVI 243



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFG 73
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K I Q     FN   
Sbjct: 3   RRRKTEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKQISQALIGVFNDPE 60

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           +++     G     +        K     D  + + S D     T+ 
Sbjct: 61  RSMKPIPIGDERPLSVKPAEPLIKDSEQTDAGLAQTSADPLKTITDD 107


>gi|327481242|gb|AEA84552.1| flagellar motor protein MotD [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A+ +  T   L+A++    +        I I +    ++ +F    ++P  +   +
Sbjct: 99  LERIAQSMRETFGELIAND---QLTIRGNELWIEIELS---SSLLFPSGDALPNNQAFQL 152

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +LA     + + G TD  P   +    NW LS  RA S  ++L   GV+  R++
Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLPISTDKFPTNWELSAARAGSVVRMLAAQGVNPSRLA 212

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILV 338
            + G+   +     A+    + NRR+ ++V
Sbjct: 213 AV-GYGEFQPVADNATAEGRARNRRVVLVV 241



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++ A ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K +          +
Sbjct: 1   MARRRAPEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQV 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             + K I   +  P  +     D+S  E +T            ++      E     ++N
Sbjct: 60  DRSVKPIPIGEERPRTTEP---DVSQVEDLTGPGSGEPTLDPLERIAQSMRETFGELIAN 116

Query: 137 SQQS 140
            Q +
Sbjct: 117 DQLT 120


>gi|254785497|ref|YP_003072926.1| OmpA family protein [Teredinibacter turnerae T7901]
 gi|237684013|gb|ACR11277.1| OmpA family protein [Teredinibacter turnerae T7901]
          Length = 305

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            DL   +++ LS  +   +   V        + I++   ++  +F   S+ P      + 
Sbjct: 76  DDLLNTLNAVLSQQIGAGM---VTVSGNEDWVEIAV---KSQLLFASGSAAPSTAAQQIF 129

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            ++ +VLA     I++ GHTD  P RN    +NW LS  RA +   +L  +GV+ +R++ 
Sbjct: 130 NELADVLAPFENAIAVSGHTDNVPIRNQQFQNNWELSAARAVAVVNLLAYAGVAPERLAA 189

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +G+   +    ++     +ANRR+ + +   +
Sbjct: 190 -TGYGEFQPVADNNSAQGRAANRRVVLRIARTK 221



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           N   W + YADF+T+L  FF+VM+ ++   +   + + +  +      +          N
Sbjct: 12  NHERWLVSYADFVTLLFGFFVVMYSVSQVSETKYRTLSETLSGAFSGAVQTPP-----TN 66

Query: 89  PPERSSQNKIDL 100
            P  +     DL
Sbjct: 67  LPRTALVAPDDL 78


>gi|157692040|ref|YP_001486502.1| flagellar motor protein MotB [Bacillus pumilus SAFR-032]
 gi|157680798|gb|ABV61942.1| flagellar motor protein B [Bacillus pumilus SAFR-032]
          Length = 254

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 10/191 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D       E++ N  +        +E     +    L  + K++ S ++      +   +
Sbjct: 66  DQSSMQSTEETENSNQTKKAAEEDEEAKAKARDHAVLTKVKKQVDSFIAN---KKLGAKL 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             + T  G+LI+I D      FD   ++  P+ + + ++I ++L  +    I I GHTD 
Sbjct: 123 ETKLTDEGLLITIEDS---IFFDSGRAVIRPQDVPLAKEISKLLVINPARDIVISGHTDN 179

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
            P RN     NW LS  RA +   +L+++           GF   +   ++D     S N
Sbjct: 180 VPIRNSDFESNWYLSAIRAVNFLSILLENSNLNQENFSTKGFGEFKPIASNDTAEGRSKN 239

Query: 332 RRIDILVEDRQ 342
           RR+++L+   +
Sbjct: 240 RRVEVLILPIE 250



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          +K+   D   +   SW I YAD +T+L+A F+V++  ++ D    + + + FN       
Sbjct: 3  RKRKKHDHDDHVDESWLIPYADLLTLLLALFIVLFASSSIDAAKYEQMAKSFNVV----F 58

Query: 78 TASKGIFDEQN 88
          T   G+ D+ +
Sbjct: 59 TGGTGVMDQSS 69


>gi|328948405|ref|YP_004365742.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
 gi|328448729|gb|AEB14445.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
          Length = 240

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 25/217 (11%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              S++ Q    + SL+ ++  G        L    N   +  LP + K + L    KK 
Sbjct: 37  PSESDAVQMAALQASLSNNNPGGGISVSPGSLANLGNVVSS--LPSIEKGRALGPAMKKA 94

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIV 250
           +   A ++ S             +   +   G++IS+        F++ S+     E   
Sbjct: 95  ISSFAPEVKS-----------NKITITSDERGLVISLASDT---FFEEGSAELNIEEARG 140

Query: 251 VLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            L  + +  A    +     I GHTD  P    +I   NW  S  RA +    L   GV 
Sbjct: 141 TLINLAKFFASPEVAGRRWRIEGHTDNRPVPASSIYPSNWEFSAARAANVLHYLADFGVD 200

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           E +   I+G+A  R K+++D     + NRR+D++V D
Sbjct: 201 EQQF-SIAGYADTRPKLSNDTAEGRAYNRRVDVIVLD 236



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLM 77
           K    +      +W   Y D +T+++ FF++++  + +D     A++     N  G  + 
Sbjct: 3   KREKKEPAKPSTAWMGTYGDMITLMLCFFVMLYDPSESDAVQMAALQASLSNNNPGGGIS 62

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
            +   + +  N        +   ++   + K          + K      E  +
Sbjct: 63  VSPGSLANLGNVVSSLPSIEKGRALGPAMKKAISSFAPEVKSNKITITSDERGL 116


>gi|118443271|ref|YP_877986.1| chemotaxis motB protein [Clostridium novyi NT]
 gi|118133727|gb|ABK60771.1| chemotaxis motB protein [Clostridium novyi NT]
          Length = 241

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +++  K+    S    +N+   V  +    GI++ +   +   +FD   +     +  +L
Sbjct: 92  EEMYSKVKDFTS---KNNLDSTVQVKKDARGIILEL---KENILFDSGQADLKLSSKEIL 145

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310
            KI  ++      I I GHTD  P  N     NW LS  RA +  +   +  G   ++  
Sbjct: 146 DKISALIESVPNGIIIEGHTDNVPIHNSKYDSNWELSTQRAVNVLKYFVVSKGEKPEKF- 204

Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILV 338
           + +G+  +     +D     + NRR++IL+
Sbjct: 205 QAAGYGEYHPIAKNDNYVDRAKNRRVNILI 234


>gi|152984991|ref|YP_001349219.1| flagellar motor protein MotD [Pseudomonas aeruginosa PA7]
 gi|150960149|gb|ABR82174.1| probable chemotaxis protein [Pseudomonas aeruginosa PA7]
          Length = 296

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 10/198 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +LT    +     K   + +   +        + ++          LQ +A  +    
Sbjct: 50  SETLTGVFNQPDRSLKPIPIGEERPRTTEPERTSVEEQPSDNAASADSLQQIADSVRGAF 109

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L+A + +           + I I    ++ +F    ++P      +++K+ ++LA   
Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFGIVEKVAKILAPYK 163

Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
             I + G TD  P  +     NW LS  RA S  ++L   GV   R++ + G+   +   
Sbjct: 164 NPIHVEGFTDDVPIHSQRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222

Query: 322 -IASDPMNSANRRIDILV 338
             AS    + NRR+ +++
Sbjct: 223 DNASAAGRAKNRRVVLVI 240



 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K + +         
Sbjct: 1   MPRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             + K I   +  P  +   +  +         S D      +  +  
Sbjct: 61  DRSLKPIPIGEERPRTTEPERTSVEEQPSDNAASADSLQQIADSVRGA 108


>gi|194014658|ref|ZP_03053275.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC
           7061]
 gi|194013684|gb|EDW23249.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC
           7061]
          Length = 254

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 10/191 (5%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D       E++ N  +        +E     +    L  + K++ S ++      +   +
Sbjct: 66  DQTSMQSTEETENSNQTKKAAEEDEEAQAKARDHAVLTKVKKQVDSFIAN---KKLGAKL 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             + T  G+LI+I D      FD   +I  P+ + + ++I ++L  +    I I GHTD 
Sbjct: 123 ETKLTDEGLLITIEDS---IFFDSGRAIIRPQDVPLAKEISKLLVINPARDIVISGHTDN 179

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
            P RN     NW LS  RA +   +L+++           GF   +   ++D     S N
Sbjct: 180 VPIRNSEFESNWYLSAIRAVNFLSILLENSNLNQENFSTKGFGEFKPIASNDTAEGRSKN 239

Query: 332 RRIDILVEDRQ 342
           RR+++L+   +
Sbjct: 240 RRVEVLILPIE 250



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          +K+   D   +   SW I YAD +T+L+A F+V++  ++ D    + + + FN       
Sbjct: 3  RKRKKHDHDDHVDESWLIPYADLLTLLLALFIVLFASSSIDAAKYEQMAKSFNVV----F 58

Query: 78 TASKGIFDEQN 88
          T   G+ D+ +
Sbjct: 59 TGGTGVMDQTS 69


>gi|319791244|ref|YP_004152884.1| type IV / vi secretion system protein, dotu family [Variovorax
           paradoxus EPS]
 gi|315593707|gb|ADU34773.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus EPS]
          Length = 454

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           VK  L   T      S++  R    F   S+ P+  ++ VL++IG+ LA     + I GH
Sbjct: 302 VKQGLVTVTDEADR-SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGDVLITGH 360

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +D  P R++    NW LS  RA +    L    V   R+ +  G A      A+D     
Sbjct: 361 SDNQPIRSLRYPSNWHLSAARADAVKGALTTL-VDPARM-RSDGKADAEPVAANDTPANR 418

Query: 329 SANRRIDILVED 340
           + NRR+DI++  
Sbjct: 419 ARNRRVDIVLLT 430


>gi|332981443|ref|YP_004462884.1| OmpA/MotB domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332699121|gb|AEE96062.1| OmpA/MotB domain protein [Mahella australiensis 50-1 BON]
          Length = 251

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E     +R    QD  + +   +   +  N +     E T   + I ++  ++  +F+  
Sbjct: 75  EGQDLEQRTNEPQDEFESLYEDMQRYIQQNNI-AATVEMTENKMEI-LLRFKDNVLFESG 132

Query: 241 SSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAY 296
            +  +P  + VL  I  VL         + I GHTD  P   +    NW LS  RA +  
Sbjct: 133 KADIIPSALPVLNNIAGVLKTYKEQIGGVRIEGHTDNVPIHTVMFPSNWELSTARAVTVL 192

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +  ++       +    G+  +     +D     + NRR+DI++  
Sbjct: 193 RYFVERQHLPPEMLSAVGYGEYHPVATNDTIEGRAKNRRVDIVITR 238


>gi|326795346|ref|YP_004313166.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326546110|gb|ADZ91330.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 254

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 17/209 (8%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            +    + + T+ S  G ++ K  D + + N +  Y   P+   +          + + +
Sbjct: 56  SEGALTRLNPTQYSGGGTEIIKPADPQLATNDDLTYSKEPIDDVER---------EHVKE 106

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
             + T +   A+N+   +        I I +       +F+   +  L     + + +  
Sbjct: 107 IANDTANKFAAENLDSQIAVFEDGEKITIRV---DGASLFESGEADVLWSAEPIFEALYR 163

Query: 258 VLAHST-EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +        ISI+GHTD  P        NW LS  RA +  +  ++ G+  +R++  +G+
Sbjct: 164 IFVTYPDYNISIKGHTDNIPINTTRFPSNWELSAIRATTTLRYFLEKGIPPERMTA-TGY 222

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342
           A     + +D     + NRR + +++  +
Sbjct: 223 ADVIPLVPNDTPEHRAQNRRAEFVLQRNK 251



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 5/150 (3%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
               +  W + YAD M++L+ FF++++ ++   + T  +           +   S+G   
Sbjct: 7   EEEEVAGWIVTYADLMSLLLVFFILLYSLSKLTESTLVSALSSI-----QIALNSEGALT 61

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             NP + S      +   +     + DL           +     I   + ++ +    +
Sbjct: 62  RLNPTQYSGGGTEIIKPADPQLATNDDLTYSKEPIDDVEREHVKEIANDTANKFAAENLD 121

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           S     E G+ +    D        E   L
Sbjct: 122 SQIAVFEDGEKITIRVDGASLFESGEADVL 151


>gi|218133672|ref|ZP_03462476.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991047|gb|EEC57053.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC
           43243]
          Length = 266

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 108/326 (33%), Gaps = 70/326 (21%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K+   +      +W   ++D M +L+ FF++++ ++  + +  + +              
Sbjct: 3   KIKKREEKGGGAAWMNTFSDLMNLLLCFFVMLFAMSDPNQEKFQQLSASLASTFSIFNAG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S  + D                                             +   S + Q
Sbjct: 63  SISMGD--------------------------------------------GVLIGSGASQ 78

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                          +      +++ +  + +   L              +  + +A+ I
Sbjct: 79  LNELAIYYNNMGMNSEGEITQEEIKDAAQQIQEAGL--------------QESEHMAENI 124

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L     + +   V  + T   +++++    +  +FD   S    E + +L K+  +L
Sbjct: 125 EKQLEQ---NMLSDDVEVKATSKYVMLNL---NSGILFDSGKSELKTEAVTLLDKVSSIL 178

Query: 260 -AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
             ++  +I+I GHTD +P  N    DN  LSL RAYS +  L    G     +   +G  
Sbjct: 179 WEYNDNMIAIEGHTDNNPIHNSKYPDNTMLSLYRAYSVFTYLTDQKGFDASTMLA-TGRG 237

Query: 317 HHRLKIASDP--MNSANRRIDILVED 340
                 ++      + NRR++I + +
Sbjct: 238 ESVPIASNATAEGRAQNRRVEIKIYN 263


>gi|172058884|ref|YP_001815344.1| OmpA/MotB domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171991405|gb|ACB62327.1| OmpA/MotB domain protein [Exiguobacterium sibiricum 255-15]
          Length = 257

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 87/211 (41%), Gaps = 13/211 (6%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
             ++ + +    S +     G  +  ++ L  S  +E++      +K +         + 
Sbjct: 39  NVDAVKLKAMSQSFSSVFNGGSGMITNSSLSTSQEEEDSKKTDARTKAQSY------EIA 92

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +L K        +    + K +  E T  G++ +I D     +F  + +    + I + Q
Sbjct: 93  ELEKIKEEANDYIKQQKLEKDIKVEVTNEGLVFNIRD---RALFSPAQADVKGDAIQIAQ 149

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +  +L  + +  I + GHTD  P   +    NW LS +RA S  + L ++     +   
Sbjct: 150 GMSNLLVKAGQRQIQVSGHTDNIPINTVQYPSNWELSAERAISFMRALQRNPKLTPKRFT 209

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           +SG+  ++   ++D  +    NRR+++L+  
Sbjct: 210 VSGYGEYQPIASNDTESGRSQNRRVEVLIRP 240


>gi|242280812|ref|YP_002992941.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123706|gb|ACS81402.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP--LSKEKILAMKRKKRLQDLAKKIS 200
             N L +  E    L  +  ++    +E+N  L P  L ++++      KRL  L  +I 
Sbjct: 45  ANNDLAKFKELLGSLKDAFGVQMERKEEDNLALTPSDLKRKEVKMDSNDKRLLGLVLRIK 104

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + L    A     GV  +  + G+++S     +  +F+  S+   PE   VL K+  +L 
Sbjct: 105 ALLDEDDATRKSSGVKAD--QDGVVVS---TDSATLFEPGSATLRPEAHKVLDKVISILK 159

Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHH 318
                + +RGHTD S   +     NW LS  RA SA   ++ + G++  R+  + G+A  
Sbjct: 160 DHNYNLVVRGHTDNSEIHSRKFPTNWELSSARAASALRYIVEQGGIAPKRLKAV-GYADT 218

Query: 319 RLKIASD--PMNSANRRID 335
           +  + +D     S NRR++
Sbjct: 219 QPLVKNDSPANKSKNRRLE 237


>gi|331007308|ref|ZP_08330507.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330418870|gb|EGG93337.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 434

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 103/290 (35%), Gaps = 14/290 (4%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
            D + A  +  N     L         E+   +   + +ID   ++ +       +    
Sbjct: 130 QDERVAASEKLNGEMDGLKKQLANTEQEKLAAQAGLKAEIDEIKNQLVQTEKDKNQSQEA 189

Query: 119 NQKKQYQRLENNIFYLSN-SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
               + +  E  +   +   +Q        +  ++K +      D E     E +  +  
Sbjct: 190 LSTIRNELEEKLVIKETEYEKQIAQLNEFSSLINQKYEATKAQLDEELVRIAEFSATIET 249

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           L +      + K  L +L K+++         +  K  L +  + G   ++I   +T +F
Sbjct: 250 LEERL---QREKTALSELTKQLALLDKTNAELSSEKSRLVQQFKDG--TTLIRLEDTILF 304

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLSLDRA 292
              S+         L  + + LA      ISI GHTD  P  +        NW LS  RA
Sbjct: 305 SSGSASLNARGQKTLSLVADTLAEFPNHLISIEGHTDHRPIVSTLAEKYPTNWELSAARA 364

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             A + LM+ G+   +   + GFA+ R         S   NRRI+IL+  
Sbjct: 365 SFAIRHLMEKGLPAKQFQAV-GFANTRPIAMDVDYASQKKNRRIEILLHP 413


>gi|58038715|ref|YP_190679.1| hypothetical protein GOX0240 [Gluconobacter oxydans 621H]
 gi|58001129|gb|AAW60023.1| Flagellar motor protein [Gluconobacter oxydans 621H]
          Length = 333

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 100/260 (38%), Gaps = 22/260 (8%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS--EKGKDLCKS 160
           ++ ++     L     + + Q Q L   I  L+   QS+    +   D+  ++   +   
Sbjct: 75  NKSLSSTVATLADEKQHNQAQLQTLSTQIAALTGQLQSKDQALASADDTSKQQNSKISDL 134

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NI 211
               + + ++       L  EK     +  ++ DL  K++  L+  V             
Sbjct: 135 QAQIEELTRQLQAISNALDIEKKAEQGKDAQIADLGSKLNLALADKVNQLKRYRSEFFGR 194

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------T 263
           ++ +L +     ++      ++  +F + S+   PE    +  +                
Sbjct: 195 LRDLLKDQKGVNVVGDRFVFQSEILFPQGSADLTPEGRKEITTLAHTFKQVASTIPTDLP 254

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322
            ++ + GH D  P  +    NW LS +RA +  ++L+  GV    ++  +GFA ++    
Sbjct: 255 WILRVDGHADRQPIHSAFPSNWELSSERAITVVKLLIAEGVDPHHLAA-TGFADYQPLDA 313

Query: 323 ASDPMN-SANRRIDILVEDR 341
           AS P   + NRRI+  + DR
Sbjct: 314 ASTPAAYARNRRIEFRLTDR 333


>gi|95929859|ref|ZP_01312600.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95134155|gb|EAT15813.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 246

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q L  +I + ++ L  D  +K V     R  +++ I D     +F   SS   P    VL
Sbjct: 83  QRLYTRIMTQMNRLRMDPSIKVVK---DRGAVILQINDS---ILFAPGSSTLKPAAFPVL 136

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISK 311
            K+ E++        I GHTD  PF      NW LS+ R+ S  +   K+ +   +R+S 
Sbjct: 137 AKVAELIRPLPLSARIEGHTDDIPFGRADMSNWDLSVARSVSVLKYFQKNDLLPLNRMSA 196

Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVED 340
           + G+   +  + +D     + NRR++ ++E 
Sbjct: 197 V-GYGAEKPLVPNDSPENRAKNRRVEFVLES 226


>gi|42521782|ref|NP_967162.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100]
 gi|39574312|emb|CAE77816.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100]
          Length = 249

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 10/150 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + + +  ++        ++ V  +    G+ I++     +  F + S+   PE +  L K
Sbjct: 99  VERSLDKSMDSAQKKLAIQDVYHDAV--GVRIAL---AASTFFQEGSAKLKPEALKSLDK 153

Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312
           + +VL    + I I GHTD  P    +   NW L+  RA +  + L+K   +   R   +
Sbjct: 154 VADVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASAVVRYLVKVHQMDPKRFVSL 213

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340
           S +   +  + +  D   + NRRI+I +  
Sbjct: 214 S-YGDQKPVVPNDSDEHRAMNRRIEIFIVT 242



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 13/177 (7%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    +   N   W + YADF+T+L AFF+VM+  + ++++ +K  E        +L
Sbjct: 1   MAKKHRKHEEHENHERWLVSYADFITLLFAFFVVMYATSTSNEEKQKEFEDS---VKLSL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               +G  D  +    S   ++++ +     K                  +E ++    +
Sbjct: 58  HLVGRGGSDADSNSIGSIIGELEMPVGNFPKKGGPGEVEDY---------VERSLDKSMD 108

Query: 137 SQQSEHCKNSLTRDSEKGK-DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
           S Q +     +  D+   +  L  ST  ++   K +   L  L K   +    KKR+
Sbjct: 109 SAQKKLAIQDVYHDAVGVRIALAASTFFQEGSAKLKPEALKSLDKVADVLKTHKKRI 165


>gi|257875985|ref|ZP_05655638.1| flagellar motor protein MotB [Enterococcus casseliflavus EC20]
 gi|257810151|gb|EEV38971.1| flagellar motor protein MotB [Enterococcus casseliflavus EC20]
          Length = 254

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 15/192 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ ++T  +K+    E        + ++      ++L+ ++ ++S  L+   A  + +  
Sbjct: 70  DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKEQT 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274
                  G+ I++    ++ +F   S+     T   L  + + L       I I GHTD 
Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
            P +   R   NW LS  RA +  +  +  G   ++ + I  FA    K  ++     S 
Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239

Query: 331 NRRIDILVEDRQ 342
           NRR++++++  +
Sbjct: 240 NRRVEMIIQRTE 251



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K+K       +   +W + Y+D +T+L+A F+VM+ +   DD+  + I+  F     + 
Sbjct: 1   MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIKSEFGTILSSH 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            + S  I    +  E + + K   S +    + +V  ++ +   +K   +L   +     
Sbjct: 59  HSNSSVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118

Query: 137 SQQSE 141
            +Q+E
Sbjct: 119 KEQTE 123


>gi|94500736|ref|ZP_01307265.1| chemotaxis MotB protein [Oceanobacter sp. RED65]
 gi|94427058|gb|EAT12039.1| chemotaxis MotB protein [Oceanobacter sp. RED65]
          Length = 226

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
             D+ K++   ++     N+ + V     + G+ +   D     ++D  S+   P+ + V
Sbjct: 73  FSDIKKELDQIINQ---HNMQENVSVVIDKKGVKVEFSD---FSLYDSGSAAIRPQALPV 126

Query: 252 LQKIGEVLAHSTEV---ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
           L ++ +V+  S      + + GHTD  P        NW LS  RA +  + L+  GV ++
Sbjct: 127 LNEVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAARASNVVKYLLGKGVKKE 186

Query: 308 RISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           ++   SG+A  R K A            + NRR+ I V  
Sbjct: 187 QLKA-SGYADSRPKSAPIEGQVMDAQQRAENRRVVIYVRR 225



 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYFNPFG 73
           +++   D        W + YAD +T+L+AFF+++  ++  +       K+ +        
Sbjct: 12  RRRQTFDADGEG---WIVTYADAITLLLAFFVMILSVSDLNQGKIESLKEGLAGVLTGEK 68

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS-VDLKIGSTNQKKQYQRLENNIF 132
                +      +Q   + + Q  + + ID+   K    D  +  +       +    + 
Sbjct: 69  VVTPFSDIKKELDQIINQHNMQENVSVVIDKKGVKVEFSDFSLYDSGSAAIRPQALPVLN 128

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
            ++   +S   K  L        D+  ST+   S  +        + K  +    +K++L
Sbjct: 129 EVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAARASNVVKYLLGKGVKKEQL 188

Query: 193 Q 193
           +
Sbjct: 189 K 189


>gi|150390475|ref|YP_001320524.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950337|gb|ABR48865.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 243

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 87/206 (42%), Gaps = 18/206 (8%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            ++ +  +    +  S    +  +      L  L+  + +  +  ++LQ++ +      +
Sbjct: 42  QAVMQSFQGSLGVLDSGKTIEDSDYITEAMLEELTTNEQVEWEDFRKLQEIVE------N 95

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--- 261
            L  + +   +L      G+++   D     +FD   +      + +L+ +   L     
Sbjct: 96  YLDENGLASDILVLLESRGLILRFHDN---ILFDSGRAELKSRPMEILKDLAGFLDGEEF 152

Query: 262 STEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318
             + I + GHTD  P R  +    NW LS+ RA +  + L   +GV+ +R S  +G+  +
Sbjct: 153 QNKHIRVEGHTDTDPLRVTSKYETNWELSVARASNVVRFLIEDAGVTPERFSA-AGYGEY 211

Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342
           R   A+D     + NRR+D+++   +
Sbjct: 212 RPLAANDTIENKAINRRVDVVILRSE 237


>gi|257871284|ref|ZP_05650937.1| flagellar motor protein MotB [Enterococcus gallinarum EG2]
 gi|257805448|gb|EEV34270.1| flagellar motor protein MotB [Enterococcus gallinarum EG2]
          Length = 254

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
           N  +       ++ +  +++ +   Q L K        L +  +           G+ I+
Sbjct: 75  NTGKKAPTSTEAQAQEASVRTQLENQQLQKISDQLSQELASSGLKDQTEVRLESDGLHIT 134

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIAR--DN 284
           +    ++ +F   S+     T   L  + + L    T  I I GHTD  P +   R   N
Sbjct: 135 L---ASSILFTSGSAEITATTRQSLDLLSDSLKKLKTNKIVIAGHTDNVPEKGNGRYQSN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           W LS  RA +  +  +  G   ++ + I  FA    K  ++     S NRR++++++  +
Sbjct: 192 WDLSSARAINVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSENRRVEMIIQRTE 251



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 2/125 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K+K       +   +W + Y+D +T+L+A F+VM+ +   DD+  + I   F     + 
Sbjct: 1   MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFGTILSSH 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            ++S  I    +  E ++  K   S +    + SV  ++ +   +K   +L   +     
Sbjct: 59  HSSSSVIGSVIDMGETNTGKKAPTSTEAQAQEASVRTQLENQQLQKISDQLSQELASSGL 118

Query: 137 SQQSE 141
             Q+E
Sbjct: 119 KDQTE 123


>gi|307825895|ref|ZP_07656110.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307733014|gb|EFO03876.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 313

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 103/310 (33%), Gaps = 33/310 (10%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + Y D   +++   + +  ++  + + ++A                       N P+ 
Sbjct: 30  WLLTYLDVFVLIVMLVITLITVSGINTERQQAAA---------------------NKPQV 68

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
               K   +I   +  ++       +    +   ++  I      + +    N+ T   E
Sbjct: 69  IKPKKAPAAICPPVATSTTINTP--SPVVVENDPIKPIILTEHKVEINPDSSNAKTEPIE 126

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                  +   E  +  E        S     A        +L ++++  +       + 
Sbjct: 127 SNSIAHTTNAPEIKVATETATNSIATSTNSKQAAANLTEETELQQQLTKAIDEF---GLN 183

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K V  +  +    + I D     +F  S +        +L+++  +L  S  +I I GHT
Sbjct: 184 KAVNIKVNQGYAQLEIQD---KVLFKSSEADLTASGGALLKRLMPLLKQSVGLILIEGHT 240

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           D  P +      NW L   RA S    L+   +   R+  I+ +A       +       
Sbjct: 241 DNIPIKTAQFPSNWELGASRATSVLHFLVLQQLDSSRLRAIT-YADTMPIADNSTPEGKE 299

Query: 330 ANRRIDILVE 339
            NRR++IL++
Sbjct: 300 KNRRVNILIK 309


>gi|86134567|ref|ZP_01053149.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85821430|gb|EAQ42577.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 283

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 10/245 (4%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           +EH       LK+ ++ QK   ++ + +    + S+Q ++ +       ++ ++L   T 
Sbjct: 30  EEHAQAKDELLKVETSLQKCLIEKEKQDTKVFALSEQVKYLQEDKKTALKQVENLTVLTQ 89

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV-KGVLFETTR 221
                 K     L    K      K   +   L   I   L+  +AD I  K +     +
Sbjct: 90  SSSDNIKNVISQLSEKDKYINGVRKAMTQKDSLNLAIKYHLTRNLADGIQDKDIEVNVEK 149

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF-RN 279
           T + ISI D     +F   S         VL KI +V+    +  + I GHTD +P  R+
Sbjct: 150 TVVFISISD---KLLFKSGSYNVTENAYTVLDKIAKVIKDQPKMEVMIEGHTDTTPIKRD 206

Query: 280 IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + +DNW LS  RA S  ++L  K GV  +R+   +G + +     +D     + NRR  I
Sbjct: 207 LIQDNWDLSALRATSITRILQYKFGVKPERLIA-AGRSQYIPLAPNDTAENKAKNRRTKI 265

Query: 337 LVEDR 341
           ++  +
Sbjct: 266 IIMPK 270


>gi|313682225|ref|YP_004059963.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155085|gb|ADR33763.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 283

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           +  E    Y     + +  K  L  + +K +    +T +E +  +          K    
Sbjct: 55  RNQEEIERYNKEINELKTKKQELEAEYQKLQASLNTTRMELAEKQSMLNLTEKQLKTLRQ 114

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
                ++  ++  +    L  ++       +        ++I++       +F    +  
Sbjct: 115 IEAETQKRNEIYARFVGKLQKMID---AGKLTVSIENGRLVINL---PENVLFPTGRTTL 168

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
                  L++I +VL    E    I GHTD  P  N     NW LS  RA     +++  
Sbjct: 169 NAGGSETLKEIADVLKELPERRFQIEGHTDTVPIHNDRFASNWELSSGRALRVVHLMIDE 228

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           GV    IS  +G+   + +  ++     + NRRI+I++  
Sbjct: 229 GVQPANISA-AGYGEFQPRADNNTTEGKALNRRIEIVMLP 267


>gi|254719715|ref|ZP_05181526.1| hypothetical protein Bru83_09258 [Brucella sp. 83/13]
 gi|265984730|ref|ZP_06097465.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306837825|ref|ZP_07470687.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653]
 gi|306841432|ref|ZP_07474134.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2]
 gi|264663322|gb|EEZ33583.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306288538|gb|EFM59890.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2]
 gi|306407064|gb|EFM63281.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653]
          Length = 343

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    +D     + NRRI++ + +R
Sbjct: 318 YQPLDTADTADARARNRRIELKLTER 343


>gi|303248961|ref|ZP_07335208.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489684|gb|EFL49620.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 261

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            +  +++ K+         K +  A++ +++ Q+L     + ++ L  +   + +     
Sbjct: 35  PEALENLTKQLFRSKADERKAEARAVELERKTQELQTAYDALVADLRGEVDSRDIRVRQF 94

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           R  + I+ +D     +F   S+   P    +L+K+G VLA   +  I + GHTD++P  +
Sbjct: 95  REKLEINFVD---KILFASGSAEITPRGREILRKVGGVLAKVKDKSIYVVGHTDSNPIHS 151

Query: 280 I-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
                NW LS  R+ S  + L    GV+ +R + + G A ++   ++        NRR+D
Sbjct: 152 ALYPSNWELSTARSASVIRFLSESGGVTPERFTAM-GRAFYQPVASNATPEGRHENRRVD 210

Query: 336 ILV 338
           I+V
Sbjct: 211 IIV 213


>gi|171318547|ref|ZP_02907697.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
 gi|171096248|gb|EDT41156.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
          Length = 460

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 28/321 (8%)

Query: 28  NNLGSW-----KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
              G+W      + +         FF ++  ++        A+E Y+      +    + 
Sbjct: 153 GGGGAWSSRSLLVTFHGEAAGGERFFTILHRLSQDGAANLDALELYYLILALGMEGRYRL 212

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +         +   ++   + + I +     +   +   K         +++     +  
Sbjct: 213 V-----DGGDAELARLRERLRQLIGRTRGAYERTLSPHWKGRGDRRPPPWHVRPLWWALA 267

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
              S +       D    +     ++      LP        A  R+      A K++  
Sbjct: 268 GVASASSLLFVTLDYRLRSQALPVVSALRQARLPQGGGSPEPASVRQ-----YAPKLAVL 322

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+  +A    + +  + T    +I++    +  +F   S+  LP  + V+++IG+ L   
Sbjct: 323 LAPEIAR---RTLQIDETADRAVITL---NSDGLFASGSARVLPSQVSVIRRIGDALRDV 376

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSEDRISKISGFAHHRL 320
              + + GHTD  P       NW+LSLDRA S  Q+L     G+  +R     G      
Sbjct: 377 PGRVIVVGHTDNQPPSPGKPSNWQLSLDRAGSVVQLLRDEAGGL--ERFLA-QGRGESEP 433

Query: 321 KIASD--PMNSANRRIDILVE 339
               D     + NRR+ I V 
Sbjct: 434 VAPDDSAADRARNRRVVITVL 454


>gi|172062063|ref|YP_001809715.1| hypothetical protein BamMC406_3023 [Burkholderia ambifaria MC40-6]
 gi|171994580|gb|ACB65499.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MC40-6]
          Length = 434

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K+RL    +++   LS L+ + I +G++  T       S++  R   MF     + LPE 
Sbjct: 285 KERLASAPQRLR--LSQLLRNEIARGLV--TVDEDDRRSVVVFRGDSMFASGKRVVLPEI 340

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307
             +L K+   +A     + + GHTD  P R+ A  DN  LS  RA    Q+L + G   +
Sbjct: 341 EPILNKVASEVARVGGNVLVSGHTDNQPIRSAAFADNQVLSEKRAEFVAQILQRDGTPAE 400

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           RI  + G    +     A+    + NRR++I+V
Sbjct: 401 RIRAV-GKGDTQPVGDNATAAGRALNRRVEIMV 432


>gi|257866373|ref|ZP_05646026.1| flagellar motor protein MotB [Enterococcus casseliflavus EC30]
 gi|257873111|ref|ZP_05652764.1| flagellar motor protein MotB [Enterococcus casseliflavus EC10]
 gi|257800331|gb|EEV29359.1| flagellar motor protein MotB [Enterococcus casseliflavus EC30]
 gi|257807275|gb|EEV36097.1| flagellar motor protein MotB [Enterococcus casseliflavus EC10]
          Length = 256

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 15/192 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ ++T  +K+    E        + ++      ++L+ ++ ++S  L+   A  + +  
Sbjct: 70  DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKEQT 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274
                  G+ I++    ++ +F   S+     T   L  + + L       I I GHTD 
Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
            P +   R   NW LS  RA +  +  +  G   ++ + I  FA    K  ++     S 
Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239

Query: 331 NRRIDILVEDRQ 342
           NRR++++++  +
Sbjct: 240 NRRVEMIIQRTE 251



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K+K       +   +W + Y+D +T+L+A F+VM+ +   DD+  + I+  F     + 
Sbjct: 1   MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIKSEFGTILSSH 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            + S  I    +  E + + K   S +    + +V  ++ +   +K   +L   +     
Sbjct: 59  HSNSSVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118

Query: 137 SQQSE 141
            +Q+E
Sbjct: 119 KEQTE 123


>gi|254700373|ref|ZP_05162201.1| hypothetical protein Bsuib55_05884 [Brucella suis bv. 5 str. 513]
 gi|261750869|ref|ZP_05994578.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261740622|gb|EEY28548.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 343

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADTRARNRRIELKLTER 343


>gi|313674311|ref|YP_004052307.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941009|gb|ADR20199.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 315

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 120/303 (39%), Gaps = 17/303 (5%)

Query: 48  FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER-SSQNKIDLSIDEHI 106
            +++  +          +           M     +  + N  E   +Q   +    E +
Sbjct: 10  LIILSSVACVTQKKYDELLAEKVKLDAEKMKLEDKVALKNNTIESLEAQLAEEQETLEQV 69

Query: 107 TKNSVDLKIGSTNQKKQYQRLEN--NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
            K   D +    + ++QY+ L +  +    S+ + ++   N   +  +   DL  S    
Sbjct: 70  RKAYQDSQSSLDSLQQQYKTLNDYYDKLMSSSGKLNKDLANKEKQLLQMEADLEISKQRN 129

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
             +          +++ + +   ++  +  L +K+S  L     +++      E     +
Sbjct: 130 DELAANLAEREERVAELEKVLADKEAAVNALKQKVSEALLNFKENDL----TVEVKNGKV 185

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIAR- 282
            +S+ +Q    +F+  S++   + +  L+K+ +VL  +    I + GHTD  P     + 
Sbjct: 186 YVSLAEQ---LLFNSGSTVVDTKGVEALKKLAQVLKDNQDVNIVVEGHTDDVPISGNNKY 242

Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             DNW LS+ RA S  ++L  +G S +R++  +G      K ++D       NRR +I++
Sbjct: 243 LKDNWDLSVLRATSIVRILTNNGASPERVTA-AGKGEFAPKSSNDSAEGRRENRRTEIIL 301

Query: 339 EDR 341
             +
Sbjct: 302 TPK 304


>gi|269836612|ref|YP_003318840.1| OmpA/MotB domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785875|gb|ACZ38018.1| OmpA/MotB domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISII 229
           +   P       LA +  + +  LA  I + ++ LV   D  +     E T+ GI+I + 
Sbjct: 60  DVMEPGQPLGPALAEQDFRFMSFLA--IRAQIASLVQRYDLGLDAADVELTQEGIVIHL- 116

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288
               + +F        PE   VL  I  ++      + + GHTD  P  N    DNW LS
Sbjct: 117 --AESVLFPPGEVQLRPEAHRVLADIAAIIGPMPFPVRVEGHTDNVPPANPNYPDNWALS 174

Query: 289 LDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA S  + L    GV  +R+  + G+A HR +  +        NRR+D+++
Sbjct: 175 TMRAVSTVRFLSDVQGVPAERLVAV-GYAEHRPRADNRTLEGRRKNRRVDLVI 226



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          + ++        +   W + YAD +T+L+ FF+VM+ I+  D    +   
Sbjct: 1  MARRRHEHAGEASSERWLVTYADLITLLLVFFVVMYSISKADSAKFQRFS 50


>gi|229098968|ref|ZP_04229903.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
 gi|229117997|ref|ZP_04247357.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228665446|gb|EEL20928.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3]
 gi|228684466|gb|EEL38409.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29]
          Length = 233

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           +Q      S        K+        +      N       K+   A  +++ + +L  
Sbjct: 24  KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSANSLESEQIKKNAEAEVKQQEMNELKA 83

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +    +      + T  G++++I++     +FD   +    E++ + +++  
Sbjct: 84  VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140

Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314
           +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +   + S I G
Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-G 199

Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340
           +  +R    +D     + NRR+++ +  
Sbjct: 200 YGEYRSIAQNDTPEGKAKNRRVEVFILP 227


>gi|49187402|ref|YP_030654.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227817292|ref|YP_002817301.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|254736614|ref|ZP_05194320.1| chemotaxis protein MotB [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741652|ref|ZP_05199339.1| chemotaxis protein MotB [Bacillus anthracis str. Kruger B]
 gi|49181329|gb|AAT56705.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227002900|gb|ACP12643.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
          Length = 156

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L+ L KKI   ++      +      + T  G++++I++     +FD   +    E++ 
Sbjct: 3   ELKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLG 56

Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSED 307
           + +++  +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  +
Sbjct: 57  IAKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPE 116

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           + S I G+  +R    +D     + NRR+++ +  
Sbjct: 117 KFSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 150


>gi|289208253|ref|YP_003460319.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943884|gb|ADC71583.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 272

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 76/205 (37%), Gaps = 7/205 (3%)

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
             ++     S          D +  ++         L   +    +    + D   + ++
Sbjct: 69  DPRDDRPLASAAQPIQLAHPDRQALLDPLVAPLTGNLGDLEGRLHEPLPEVDDPDLEGTA 128

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           T +  + +   +GV          + I D+    +F    +   PE  ++L ++  +L  
Sbjct: 129 TTASRMREQAPQGVEVVEHPGRTELRIQDE---ILFASGQADLQPEGRMLLAQLEPLLDE 185

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
              +I++ GHTD  P        NW LS  RA    + L+  G+  +R+  + G A  + 
Sbjct: 186 HDGLITVEGHTDNIPIATERFPSNWELSSARASGVVRYLLDQGLEAERLRAV-GRADTQP 244

Query: 321 KIASDPMNSA--NRRIDILVEDRQG 343
             ++D       NRR+ +++E    
Sbjct: 245 VASNDTARGRSENRRVALILESPTA 269


>gi|302343737|ref|YP_003808266.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640350|gb|ADK85672.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 245

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           +  +           +         K+ L ++ +  S      +A ++ +G+       G
Sbjct: 66  QPGVQAHRRIMEQLETATPADLDLAKQELAEMMELPSGQTD--LAGSLQQGLQVRQEPRG 123

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIA 281
            +I++    N  +F    +   P+ +  ++KI  VLAH +  IS+ GHTDAS     +  
Sbjct: 124 TVITL---ANDLLFAPGKAELSPQAVESIKKIASVLAHGSANISVEGHTDASAPGAGSGF 180

Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            DNW LSL RA++    L+   G+  DR+ +++     R  + +D     + NRR +I+V
Sbjct: 181 GDNWSLSLARAHAVLLRLIDPGGLKPDRL-RLAALGDSRPLVPNDTPQRRAMNRRTEIVV 239

Query: 339 E 339
            
Sbjct: 240 L 240



 Score = 36.4 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
          KKK  +   P     W   ++D +T+L+ FF+++  +   +    KA
Sbjct: 4  KKKQEVGFDPLG---WMFTFSDLVTLLLTFFVMLLAMKQPEVLKFKA 47


>gi|15596658|ref|NP_250152.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAO1]
 gi|107100895|ref|ZP_01364813.1| hypothetical protein PaerPA_01001925 [Pseudomonas aeruginosa PACS2]
 gi|116049406|ref|YP_791791.1| flagellar motor protein MotD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254234559|ref|ZP_04927882.1| MotD [Pseudomonas aeruginosa C3719]
 gi|254239810|ref|ZP_04933132.1| MotD [Pseudomonas aeruginosa 2192]
 gi|313106460|ref|ZP_07792691.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016]
 gi|9947413|gb|AAG04850.1|AE004575_9 MotD [Pseudomonas aeruginosa PAO1]
 gi|3721573|dbj|BAA33552.1| ORF2 [Pseudomonas aeruginosa]
 gi|115584627|gb|ABJ10642.1| chemotaxis protein, MotD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166490|gb|EAZ52001.1| MotD [Pseudomonas aeruginosa C3719]
 gi|126193188|gb|EAZ57251.1| MotD [Pseudomonas aeruginosa 2192]
 gi|310879193|gb|EFQ37787.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016]
          Length = 296

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +LT    +     K   +     +        + ++          L+ +A  +    
Sbjct: 50  SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDAF 109

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L+A + +           + I I    ++ +F    ++P      +++K+ ++LA   
Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163

Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
             I + G TD  P  +     NW LS  RA S  ++L   GV   R++ + G+   +   
Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222

Query: 322 -IASDPMNSANRRIDILV 338
             AS    + NRR+ +++
Sbjct: 223 DNASAEGRAKNRRVVLVI 240



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K + +         
Sbjct: 1   MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             + K I      P  +   +  +         S D      +  +  
Sbjct: 61  DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDA 108


>gi|218892666|ref|YP_002441535.1| flagellar motor protein MotD [Pseudomonas aeruginosa LESB58]
 gi|218772894|emb|CAW28706.1| MotD [Pseudomonas aeruginosa LESB58]
          Length = 296

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +LT    +     K   +     +        + ++          L+ +A  +    
Sbjct: 50  SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDAF 109

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L+A + +           + I I    ++ +F    ++P      +++K+ ++LA   
Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163

Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
             I + G TD  P  +     NW LS  RA S  ++L   GV   R++ + G+   +   
Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222

Query: 322 -IASDPMNSANRRIDILV 338
             AS    + NRR+ +++
Sbjct: 223 DNASAEGRAKNRRVVLVI 240



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K + +         
Sbjct: 1   MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             + K I      P  +   +  +         S D      +  +  
Sbjct: 61  DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDA 108


>gi|118581755|ref|YP_903005.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504465|gb|ABL00948.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 266

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 93/247 (37%), Gaps = 11/247 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
           + +      V+     + +    +R +  +   ++  ++E    +  + + +     K+ 
Sbjct: 23  VAQSTYLKKVEEAEYLSREFADLKRGQEQLTAENSGLKTELADQARQKQALEQLLASKTD 82

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
            L +++N           + + L   R+++   L       L  L ++     V+    +
Sbjct: 83  TLSQNVNDLRQKIAALEDENRELRKAREEKTSQLGTTYEKLLQNLKSEIAQGQVVISELK 142

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280
             + +++       +FD       PE  ++L K+ E L  + +  I + GHTD       
Sbjct: 143 GALTVTM---EAAILFDSGRVDVKPEGQLILFKLVETLKANRDRAIRVEGHTDNLAPSGA 199

Query: 281 ----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
                  NW LS  RA +  + L + GV    +S ++    +R    +      + NRRI
Sbjct: 200 LSRLFPSNWELSGARAVNVARYLQRQGVDPSLLSAVAC-GEYRPVADNATREGRARNRRI 258

Query: 335 DILVEDR 341
           +I +  R
Sbjct: 259 EITLVAR 265


>gi|302343053|ref|YP_003807582.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639666|gb|ADK84988.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 247

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 10/242 (4%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           +  ++ I K S        +           +  ++N    +  +   +  +  G     
Sbjct: 1   MPPEKKIKKGSPPWMATFADLSTLLLTFFVLLLSMANMDVQKFREMLGSVQAAFGVQYEV 60

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFE 218
             D +              +       + +  ++  ++++S  +   V +  +   V   
Sbjct: 61  QGDFQPVAVPTAAPSAQNAAAPSRRISEARAAME--SRQMSEQVQNFVNETGLGSEVNVN 118

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+ + +   +    F+   +    E   +L+ I +V       +++ GHTD  P  
Sbjct: 119 AGNKGVRLRV---KGHLFFEPGGAEIRQEAKKLLEGIAKVTKKFDFYLTVEGHTDDQPIS 175

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
                 NW LS  RA +  + L   GV E R+S I G+A      A+  +   + NRR++
Sbjct: 176 TPRFPSNWELSAARAAAVLRYLAGDGVPEKRMSAI-GYASSFPIAANTSEAGRNKNRRVE 234

Query: 336 IL 337
            +
Sbjct: 235 FV 236


>gi|254694373|ref|ZP_05156201.1| hypothetical protein Babob3T_06882 [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214683|ref|ZP_05928964.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916290|gb|EEX83151.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 343

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNPEIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|91204077|emb|CAJ71730.1| similar to flagellar motor protein B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 215

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 12/187 (6%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +  N++ +  L  L +E         R +    ++ ++   L +     G + +     +
Sbjct: 33  RVENQQLSQSLASLQQENANLSATASRYESELNRLENSRRDLESKLAGTGAITKIKDGSV 92

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEV-ISIRGHTDASPF---RN 279
            I + D     +FD   +    ++   L+KI  +L    +   + I GHTD+ P    ++
Sbjct: 93  SIVLPDS---ILFDPGQTKLREQSKATLKKIAGILKTDISNEMVRIEGHTDSDPIQKQKD 149

Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               NW LS  RA S    L+   G+S  R+  ++GF   +    +      + NRR++ 
Sbjct: 150 KYPSNWELSTARANSVLHYLVDECGISPTRVY-VAGFGQFQPISDNKTKAGKAQNRRVEF 208

Query: 337 LVEDRQG 343
           ++    G
Sbjct: 209 VIISGGG 215


>gi|330502789|ref|YP_004379658.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01]
 gi|328917075|gb|AEB57906.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01]
          Length = 269

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           EE           +        LQ +A  +      L+       +        I I + 
Sbjct: 70  EERPRTSEPDNTSMDDPSSDSTLQSIASSVREAFGDLIQ---SDQLTVRGNEMWIEIELS 126

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLS 288
              ++ +F    +IP  +   +++K+ ++LA     + + G TD  P +      NW LS
Sbjct: 127 ---SSLLFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTAQYPTNWELS 183

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             RA S  ++L   GV   R++ + G+   +     A+      NRR+ +++
Sbjct: 184 TARASSIVRMLAMDGVDPSRLAAV-GYGEFQPVADNATAEGRGRNRRVVLVI 234



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + +          
Sbjct: 3   RRRQHEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLTGVFNQPD 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
            + K I   +  P  S     + S+D+  + +++     S  +        + +    N 
Sbjct: 61  RSIKPIPVGEERPRTSE--PDNTSMDDPSSDSTLQSIASSVREAFGDLIQSDQLTVRGNE 118

Query: 138 QQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              E    +SL   S       ++ D+ + + K    +  P+  E
Sbjct: 119 MWIEIELSSSLLFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVE 163


>gi|306844705|ref|ZP_07477290.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1]
 gi|306274877|gb|EFM56647.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1]
          Length = 343

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLNAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|302341787|ref|YP_003806316.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638400|gb|ADK83722.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 354

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 109/339 (32%), Gaps = 33/339 (9%)

Query: 4   HGDKNQENDQFIIIKKKV--AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61
             + N  +   I+ ++    A         S+ +  +D M +L+ FF++++ ++      
Sbjct: 37  RANANAADSDTIVRRRLRPLARFAQGEESPSFYLSLSDLMCLLLVFFVLIYSLS------ 90

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
                              +   D+  P ++++    + +    I        + +    
Sbjct: 91  -----------------GHEKPTDQPGPAQQAAVEIAEPAEPAQIASAPAAPGLPNAQAA 133

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                        +             + + + + + +   L++++    +      +  
Sbjct: 134 PDDLSRAALALASAGQSDPALADQPAPQPTPEPQPVDRGVTLDRALLTMVSASTATPADA 193

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                     L D  +  +       A    +G+   +    ++I +        FD   
Sbjct: 194 VATEENSLDSLLDQLRAAAGEGMPGAAGQPAEGLQITSAEGRLVIRL---PENITFDLGQ 250

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299
           ++  P     L ++  V+  + +  + + GHTD  P        NW LS  RA +  + L
Sbjct: 251 ALLKPVMAETLGRLAPVVLRNPQCQVIVTGHTDDLPISTAQFASNWELSAARAAAVARAL 310

Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
              GV   R+  I G A     + +D       NRR++I
Sbjct: 311 TAHGVPAGRLH-IRGMADQSPLLPNDSPENRQQNRRVEI 348


>gi|89893041|ref|YP_516528.1| hypothetical protein DSY0295 [Desulfitobacterium hafniense Y51]
 gi|89332489|dbj|BAE82084.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 264

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 12/175 (6%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +       S       +  + + D+  KI   +     +N+   +    T   ++ISI D
Sbjct: 84  DPVTTETDSLLAAARAREDRDMSDMKAKIDQYIKE---NNLSAQLETRITEEMLMISIRD 140

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLS 288
                +FD  S++   E   +   I ++L       + + GHTD  P        NW LS
Sbjct: 141 ---YALFDSGSALVKTEAQKLAYIISDILRQYPGYNVEVAGHTDNLPINTAEFPTNWDLS 197

Query: 289 LDRA-YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
             R+      +L   G+ + R   I G+   +    +  +   + NRR+++ +  
Sbjct: 198 SRRSLNFMKYLLQSDGLDQSRFRSI-GYGEFQPIATNTTEEGRAKNRRVEVNILR 251


>gi|17986607|ref|NP_539241.1| hypothetical protein BMEI0324 [Brucella melitensis bv. 1 str. 16M]
 gi|62290586|ref|YP_222379.1| hypothetical protein BruAb1_1699 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700502|ref|YP_415076.1| hypothetical protein BAB1_1726 [Brucella melitensis biovar Abortus
           2308]
 gi|163845293|ref|YP_001622948.1| hypothetical protein BSUIS_B1189 [Brucella suis ATCC 23445]
 gi|189024803|ref|YP_001935571.1| hypothetical protein BAbS19_I16130 [Brucella abortus S19]
 gi|225853169|ref|YP_002733402.1| hypothetical protein BMEA_A1766 [Brucella melitensis ATCC 23457]
 gi|237816090|ref|ZP_04595086.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689881|ref|ZP_05153135.1| hypothetical protein Babob68_06877 [Brucella abortus bv. 6 str.
           870]
 gi|254698031|ref|ZP_05159859.1| hypothetical protein Babob28_10068 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730915|ref|ZP_05189493.1| hypothetical protein Babob42_06907 [Brucella abortus bv. 4 str.
           292]
 gi|256045322|ref|ZP_05448216.1| hypothetical protein Bmelb1R_12582 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061749|ref|ZP_05451886.1| hypothetical protein Bneo5_15516 [Brucella neotomae 5K33]
 gi|256114280|ref|ZP_05455025.1| hypothetical protein Bmelb3E_15803 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256258134|ref|ZP_05463670.1| hypothetical protein Babob9C_12474 [Brucella abortus bv. 9 str.
           C68]
 gi|256263341|ref|ZP_05465873.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370121|ref|YP_003107632.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260547172|ref|ZP_05822910.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260565786|ref|ZP_05836269.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260755413|ref|ZP_05867761.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260758635|ref|ZP_05870983.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260762467|ref|ZP_05874804.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884428|ref|ZP_05896042.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|261325753|ref|ZP_05964950.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|265991747|ref|ZP_06104304.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995585|ref|ZP_06108142.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|297248983|ref|ZP_06932691.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|17982219|gb|AAL51505.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M]
 gi|62196718|gb|AAX75018.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616603|emb|CAJ11682.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308]
 gi|163676016|gb|ABY40126.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020375|gb|ACD73097.1| OmpA/MotB domain protein [Brucella abortus S19]
 gi|225641534|gb|ACO01448.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457]
 gi|237788753|gb|EEP62965.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|256000284|gb|ACU48683.1| flagellar motor protein [Brucella microti CCM 4915]
 gi|260095537|gb|EEW79415.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038]
 gi|260151159|gb|EEW86254.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260668953|gb|EEX55893.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260672893|gb|EEX59714.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675521|gb|EEX62342.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260873956|gb|EEX81025.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|261301733|gb|EEY05230.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|262766869|gb|EEZ12487.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002703|gb|EEZ15106.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093340|gb|EEZ17409.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297174116|gb|EFH33473.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196]
 gi|326409725|gb|ADZ66790.1| OmpA/MotB domain protein [Brucella melitensis M28]
 gi|326539433|gb|ADZ87648.1| OmpA/MotB domain protein [Brucella melitensis M5-90]
          Length = 343

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|325567537|ref|ZP_08144204.1| flagellar motor protein B [Enterococcus casseliflavus ATCC 12755]
 gi|325158970|gb|EGC71116.1| flagellar motor protein B [Enterococcus casseliflavus ATCC 12755]
          Length = 256

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ ++T  +K+    E        + ++      ++L+ ++ ++S  L+   A  +    
Sbjct: 70  DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKDQT 122

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274
                  G+ I++    ++ +F   S+     T   L  + + L       I I GHTD 
Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
            P +   R   NW LS  RA +  +  +  G   ++ + I  FA    K  ++     S 
Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239

Query: 331 NRRIDILVEDRQ 342
           NRR++++++  +
Sbjct: 240 NRRVEMIIQRTE 251



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K+K       +   +W + Y+D +T+L+A F+VM+ +   DD+  + I   F     + 
Sbjct: 1   MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFGTILSSH 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            + +  I    +  E + + K   S +    + +V  ++ +   +K   +L   +     
Sbjct: 59  HSNASVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118

Query: 137 SQQSE 141
             Q+E
Sbjct: 119 KDQTE 123


>gi|23502572|ref|NP_698699.1| hypothetical protein BR1714 [Brucella suis 1330]
 gi|161619642|ref|YP_001593529.1| hypothetical protein BCAN_A1752 [Brucella canis ATCC 23365]
 gi|254703491|ref|ZP_05165319.1| hypothetical protein Bsuib36_06117 [Brucella suis bv. 3 str. 686]
 gi|260568797|ref|ZP_05839265.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261754122|ref|ZP_05997831.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|23348573|gb|AAN30614.1| OmpA family protein [Brucella suis 1330]
 gi|161336453|gb|ABX62758.1| OmpA/MotB domain protein [Brucella canis ATCC 23365]
 gi|260154181|gb|EEW89263.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261743875|gb|EEY31801.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
          Length = 343

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEIKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|75676928|ref|YP_319349.1| hypothetical protein Nwi_2744 [Nitrobacter winogradskyi Nb-255]
 gi|74421798|gb|ABA05997.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 342

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 109/325 (33%), Gaps = 21/325 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D ++ L+   + +  +               +   + L      + D  +  +    +
Sbjct: 19  FVDALSTLVLAIVFLLTVFLVTQFFLSQEVTGKDKALEQLNARIAQLTDLLSLEKLGKVS 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D          S + +               N     +SQ ++   +     S     
Sbjct: 79  LGDEVSQLRAGLASAEAERDRIKGLYDGLAGAGNDAAGRDSQLNKALDSEKQISSRALAQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +   T    ++ ++       L   +    + + R+ DL ++++  L+  V +       
Sbjct: 139 VEVLTQQISALRRQLAALENALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSE 198

Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
           F      IL     I I+      ++   FD + +  LPE    L K+   L    + I 
Sbjct: 199 FFGRLRAILGNRPDIRIVGDRFVFQSEVFFDTAQATLLPEGKAELDKVAGALTDLDKQIP 258

Query: 267 -------SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                   + GHTD  P ++ + + NW LS  RA S  Q L   GV   R+   +GF   
Sbjct: 259 SEIAWVLRVDGHTDVRPIKSPVFKSNWDLSAARAISVVQYLASLGVPPQRLVA-AGFGEF 317

Query: 319 RLKIASDPMNS--ANRRIDILVEDR 341
           +         +   NRRI++ + +R
Sbjct: 318 QPLDPDATEEAYKRNRRIELKLTER 342


>gi|254687000|ref|ZP_05150858.1| chemotaxis protein MotB [Bacillus anthracis str. CNEVA-9066]
 gi|254724563|ref|ZP_05186346.1| chemotaxis protein MotB [Bacillus anthracis str. A1055]
 gi|254754750|ref|ZP_05206785.1| chemotaxis protein MotB [Bacillus anthracis str. Vollum]
 gi|254757582|ref|ZP_05209609.1| chemotaxis protein MotB [Bacillus anthracis str. Australia 94]
          Length = 153

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++ L KKI   ++      +      + T  G++++I++     +FD   +    E++ +
Sbjct: 1   MKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGI 54

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDR 308
            +++  +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++
Sbjct: 55  AKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEK 114

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
            S I G+  +R    +D     + NRR+++ +  
Sbjct: 115 FSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 147


>gi|224369952|ref|YP_002604116.1| MotB2 [Desulfobacterium autotrophicum HRM2]
 gi|223692669|gb|ACN15952.1| MotB2 [Desulfobacterium autotrophicum HRM2]
          Length = 244

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-E 264
           +V       +        ++++I       +FD  S+        +L +I  V+      
Sbjct: 105 IVNREAPDTIKTHVLDGKVIVTI---NGQTLFDSGSANLKQGATAILDRIVAVVFEYPEY 161

Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
            I+I+G+TD  P        NW LS  RA +  + L++ G++  R++  +G+A     + 
Sbjct: 162 SINIKGYTDDIPIETAQFPSNWELSAIRATTVLKHLIQKGINPKRLTA-TGYADMEPLVP 220

Query: 324 S--DPMNSANRRIDILVEDR 341
           +  D   + NRR++ ++E +
Sbjct: 221 NTSDTNRAINRRVEFVLEKK 240


>gi|299822262|ref|ZP_07054148.1| chemotaxis protein MotB [Listeria grayi DSM 20601]
 gi|299815791|gb|EFI83029.1| chemotaxis protein MotB [Listeria grayi DSM 20601]
          Length = 265

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 13/224 (5%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
             ++ E                N       K      +  +EK++  ++       SK K
Sbjct: 41  DAKKFEQMGNAFKKIVDEGAAGNQAHVAKSKDPTNISADAIEKAMAAQDKQKSAAASK-K 99

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            L  + K +L+   KK+ S +S    +++   +       G+LI+I D     +FD  S+
Sbjct: 100 ALEKQNKMQLEAFKKKLDSYIST---EHLEAKLSTRYANDGLLITIRDD---ILFDSGSA 153

Query: 243 IPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299
                   + ++IG +       +   I GHTD  P        NW LS  RA +  + +
Sbjct: 154 ELSASKRKIAKEIGMLFKQGDSKMEGIISGHTDDVPIHTATYKSNWELSAARAVNFMEAI 213

Query: 300 MKSGVS-EDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           +    S +  +    G+  ++    +D       NRR++I+V  
Sbjct: 214 ITENTSLDPGLFSARGYGEYKPVAKNDNAVDREKNRRVEIMVRP 257


>gi|206603127|gb|EDZ39607.1| Putative flagellar motor protein (OmpA/MotB) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 261

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +   +   +  LV  +  KG +    T+ GI++ I   ++  +F    +    + + VL
Sbjct: 82  QVQSVMIQAMQLLVQKSSEKGDMKVVQTKEGIVLRI---QSRFLFASGHARVRRKAVPVL 138

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY-QVLMKSGVSEDRIS 310
           +KI  +LA +   I + G+TD  P R      NW LS  RA +   ++L    +   R+ 
Sbjct: 139 RKIAALLARTNHEIRVHGYTDNQPIRTSRYPSNWALSTMRAVNVLTRLLEYGSIDPGRMG 198

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
             +GF   R   ++        NRR++IL+ +R+
Sbjct: 199 A-AGFGKFRPIASNLTPEGREKNRRVEILIMNRE 231



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          K    +   NL  W + YADF+T+L AFF++++ I + +    + +  
Sbjct: 3  KKPRHEEHENLERWLVSYADFITLLFAFFVMLYAIASVNTGKFRVLSN 50


>gi|209886430|ref|YP_002290287.1| flagellar motor protein [Oligotropha carboxidovorans OM5]
 gi|209874626|gb|ACI94422.1| flagellar motor protein [Oligotropha carboxidovorans OM5]
          Length = 337

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 118/336 (35%), Gaps = 26/336 (7%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
               L  W   + D ++ L+   + +  +               +   + L      + +
Sbjct: 8   GGTGLNYWP-GFVDALSTLVLAIVFLLSVFLVVQFYLSQEVSGKDKALERLNAQIAQLTN 66

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             +  + SS    D       +  + + +        +            N Q +   + 
Sbjct: 67  LLSLEKVSSGTLNDQIAQLQASLATTEAERDRAKGMAESLTSGAAGGGDLNKQLATEKQI 126

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           S    ++      + + L + +   E        K K    + ++++ DL ++++  L+ 
Sbjct: 127 SERALAQVEVLNQQISALRRQLAALEEALNASEQKGK----ESQEKIADLGQRLNVALAQ 182

Query: 206 LVADNIVKGVLFETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG 256
            V +       F      IL     I I+      ++   FD  SS  LPE    L ++ 
Sbjct: 183 RVQELSRYRSEFFGRLRAILGDRPDIRIVGDRFVFQSEVFFDSGSSGLLPEGRGELDQLA 242

Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
                   ++ A    V+ + GHTD  P  +   + NW LS  RA S  Q L+  GVS  
Sbjct: 243 TAITELEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWDLSAARAISVVQYLISRGVSPQ 302

Query: 308 RISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           R+   +GF   +    +   ++   NRRI++ + +R
Sbjct: 303 RLVA-AGFGEFQPLDTATTDDAYKRNRRIELKLTER 337


>gi|296390172|ref|ZP_06879647.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAb1]
          Length = 296

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +LT    +     K   +     +        + ++          L+ +A  +    
Sbjct: 50  SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASVDSLERIADSVRDAF 109

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L+A + +           + I I    ++ +F    ++P      +++K+ ++LA   
Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163

Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
             I + G TD  P  +     NW LS  RA S  ++L   GV   R++ + G+   +   
Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222

Query: 322 -IASDPMNSANRRIDILV 338
             AS    + NRR+ +++
Sbjct: 223 DNASAEGRAKNRRVVLVI 240



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K + +         
Sbjct: 1   MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
             + K I      P  +   +  +         SVD      +  +  
Sbjct: 61  DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASVDSLERIADSVRDA 108


>gi|283853398|ref|ZP_06370644.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283571211|gb|EFC19225.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 301

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 114/331 (34%), Gaps = 47/331 (14%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++K+   DD       W I  AD MT+L+ FFL++  ++  D    + +           
Sbjct: 7   LRKRRPEDDD-----LWPISMADMMTLLLCFFLLLVAVSHVDLGRYERVADSMQKAMI-- 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                       P + +S+ K            +      S     +   + + + + + 
Sbjct: 60  ------------PDKPASKPKAPEPQPAPPKAPAPQAAPKSPPPPPEPASVRSKVSHTTL 107

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +              E                  E     P           KK L+D+ 
Sbjct: 108 ASDPVPPLEPEKPKPEAKPAEPAPPQAAAVPAGPEAERTGP----------TKKSLEDIR 157

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+++  L     D     V       G+ +++   R    FD +S+      + +L+ I 
Sbjct: 158 KELAGKL-----DITSGAVEILPRENGVELNL---RGAAFFDAASADIKSGGLPLLRDIA 209

Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L+ +   +++ GHTD  P  + +   NW LS  RA    ++L+  GV    + ++ G 
Sbjct: 210 ATLSGTPYRVTVEGHTDNRPIESWLYPSNWELSSARASRVARLLIDGGVPAGHM-RVEGL 268

Query: 316 AHHRLKIAS-DPMN-------SANRRIDILV 338
           A  +    + DP         + NRR+ ILV
Sbjct: 269 ADTQPVAPNTDPAGRSIAENQARNRRVVILV 299


>gi|209964330|ref|YP_002297245.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
 gi|209957796|gb|ACI98432.1| chemotaxis MotB protein [Rhodospirillum centenum SW]
          Length = 309

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 90/308 (29%), Gaps = 50/308 (16%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I Y D +T+LM  FL M  I          ++    P      TA  G          
Sbjct: 40  WVISYMDMVTLLMTVFLGMIAI--------LGMQGRLAPPEPGPETAG-GEAQTAAQAAE 90

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                    + +     ++     +             +     +  +    ++     +
Sbjct: 91  PVPPPARTVLADQTAPAALAPAPVTLAPSLPGPAPTVPMAGFPETGTAGEETSAAPATPD 150

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                  S      +   E   LPP                                   
Sbjct: 151 GPPPPPLSPAARAWLQALEAAGLPP----------------------------------- 175

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V F      I I + D     +F   S+        VL ++  +LA     I++ GHT
Sbjct: 176 -DVGFTVEDRRIAIELRD---RVLFRSGSAALETAGTAVLDRLVPMLARMPGTITVEGHT 231

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           D           NW LS  RA +  + L+ +GV   R+ + +G A  R         + N
Sbjct: 232 DPVAIATTRFPSNWELSAARAAAVVRHLVAAGVPAQRL-RATGLADSRPLTTDPARWAMN 290

Query: 332 RRIDILVE 339
           RR++I+++
Sbjct: 291 RRVEIVID 298


>gi|126664984|ref|ZP_01735967.1| flagellar motor protein MotD [Marinobacter sp. ELB17]
 gi|126630354|gb|EBA00969.1| flagellar motor protein MotD [Marinobacter sp. ELB17]
          Length = 261

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 8/151 (5%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           PLS        R + LQ+LA ++    S L+   +   +        + +++    N+ +
Sbjct: 93  PLSLPAPDNASRSRALQELAGQLGQEFSALIEGGV---ISLNADDEWLQLNL---PNSLL 146

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F    + P  ++  V++KI  VL  +   I I G TD    R+     NW LS  RA   
Sbjct: 147 FGSGDAEPHYDSFAVMEKIAGVLRDTDNAIRIEGFTDNQSIRSGRFPSNWELSAARASVL 206

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            ++L+  G+   R++ + G+  H+    +D 
Sbjct: 207 VRMLVMDGIDPARLAAV-GYGEHQPVARNDT 236



 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 1/136 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    D  ++   W I YADF+T+L AFF+VM+ +++ ++   K +         N 
Sbjct: 1   MRRRKPPQDDFHHKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSNTLTGV-FNA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
              S         P    ++  D  I   +T+  + L       + +  +          
Sbjct: 60  PERSVVPITVGEQPVAGGRSDTDAVIAPVVTEAPLSLPAPDNASRSRALQELAGQLGQEF 119

Query: 137 SQQSEHCKNSLTRDSE 152
           S   E    SL  D E
Sbjct: 120 SALIEGGVISLNADDE 135


>gi|85714417|ref|ZP_01045405.1| flagellar motor protein [Nitrobacter sp. Nb-311A]
 gi|85698864|gb|EAQ36733.1| flagellar motor protein [Nitrobacter sp. Nb-311A]
          Length = 342

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 114/319 (35%), Gaps = 29/319 (9%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSI 102
           +L  F +V + ++       KA+EQ        L      + D  +  +    +  D   
Sbjct: 33  LLSVFLVVQFFLSQEVTGKDKALEQ--------LNARIAQLTDLLSLEKLGKVSLGDEVS 84

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
                  S + +        +      N     NSQ ++   +     +     +   T 
Sbjct: 85  QLRAGLASAEAERDRIKGLYEGLAGAGNDAAGRNSQLNKALDSEKQISARALAQVEVLTQ 144

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
              ++ ++       L   +    + + R+ DL ++++  L+  V +       F     
Sbjct: 145 QISALRRQLAALEDALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSEFFGRLR 204

Query: 223 GIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI------- 266
            IL     I I+      ++   F+ + +I LPE    L KI   L    + I       
Sbjct: 205 AILGNRPDIRIVGDRFVFQSEVFFETAQAILLPEGKSELDKIANALTDLDKQIPSEIAWV 264

Query: 267 -SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             + GHTD  P  + + + NW LS  RA S  Q L+  GV   R+   +GF   +     
Sbjct: 265 LRVDGHTDVRPINSPVFKSNWDLSAARAISVVQYLVSRGVPPQRLVA-AGFGEFQPLDPG 323

Query: 325 DPMNS--ANRRIDILVEDR 341
              ++   NRRI++ + +R
Sbjct: 324 TTDDAYKRNRRIELKLTER 342


>gi|242280858|ref|YP_002992987.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123752|gb|ACS81448.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 250

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 11/197 (5%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            ++    ++ KG          +  + +   F         ++ K KK +  L   I + 
Sbjct: 51  NQDVANFETLKGSMRDAFGMQSQDKSGKHMAFSKSPHSASSVSAKAKKDMHALEVDIRAF 110

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +S   A  + K +   T + G+L+ +       +F   ++   P+  V+L K+  ++   
Sbjct: 111 IS---AGKMEKLMAVNTDQQGVLVRV---PTRAIFKPGTAQINPKATVLLDKVASIMKKK 164

Query: 263 TEVISIRGHTDASPFRNIARD-NWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRL 320
              + +RGHTD    +N     NW LS  RA S    +L KSGVS  R+  + G+A  + 
Sbjct: 165 DFNLVVRGHTDDRATKNNIYSSNWELSAARAASCLRYILKKSGVSSKRLKAV-GYAGTKP 223

Query: 321 KIAS--DPMNSANRRID 335
            + +  +   + NRR++
Sbjct: 224 LVPNTSNRNRAINRRVE 240


>gi|257092877|ref|YP_003166518.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045401|gb|ACV34589.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 189

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +++   L    K  +     L  +     V  +     + ++++D+    +F   S+ 
Sbjct: 26  QEVQQVDTLSVQNKAYAQLTQQLQTEIQADQVKIKQLEGRLTVTLVDE---IVFSSGSAE 82

Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQV 298
              +    + KI   L   + + I + G+TD +P     R+    NW LS  RA    + 
Sbjct: 83  MNMKGRATIDKIVGTLQNAAGKRIVVEGYTDNTPIGPGLRSRYPTNWELSTARACDVVRY 142

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           L  +G+   R+   +GF  ++   A+D     S NRRIDI++ D
Sbjct: 143 LQAAGIDPVRLEA-AGFGEYQPVAANDTPAGRSQNRRIDIVLMD 185


>gi|108757340|ref|YP_635150.1| putative chemotaxis MotB protein [Myxococcus xanthus DK 1622]
 gi|108461220|gb|ABF86405.1| putative chemotaxis MotB protein [Myxococcus xanthus DK 1622]
          Length = 295

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 15/222 (6%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                 +E  + S    + + +D   +    +            L+ EK      K++L 
Sbjct: 41  SQAEALAEQSRQSALDAATRARDAEAARLQLEQKLAALEAERAQLATEKEQLSSEKEQLS 100

Query: 194 DLAKKISSTLSGLVA--DNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPL 245
              ++  + L+ L A  D++   +  E     I +S       +D  +  +FD   +   
Sbjct: 101 QTVQEQEAELAKLKATYDDLQDKMKAEIAEGAIRLSHAEGRIQVDLVDKVLFDSGDASIS 160

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASP----FRNIARDNWRLSLDRAYSAYQVLM 300
                VL ++G VLA   +  I + GHTD SP     ++    NW LS+ RA +  + L 
Sbjct: 161 ARGQEVLTRLGSVLAKVEDKSIQVSGHTDDSPPSQKLQSTFPSNWELSVARAVNVVRFLQ 220

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +G    R    +G+   R    +      + NRRI++L+  
Sbjct: 221 DTGGVPARRLVAAGYGQMRPVSTNATPLGRARNRRIEVLLMP 262


>gi|228941688|ref|ZP_04104235.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228817900|gb|EEM63978.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 153

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++ L KKI   ++      +      + T  G++++I++     +FD   +    E++ +
Sbjct: 1   MKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGI 54

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDR 308
            +++  +L + S   I++ GHTD  P  N     NW LS  RA +  QVL+++  +  ++
Sbjct: 55  AKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEK 114

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
            S I G+  +R    +D     + NRR+++ +  
Sbjct: 115 FSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 147


>gi|294850964|ref|ZP_06791640.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
 gi|294821607|gb|EFG38603.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026]
          Length = 343

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
             G L E       I I+      ++  +F   S+   P+  V ++K+ + +        
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAKINPKGQVEMKKLADAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|225628282|ref|ZP_03786316.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|254708420|ref|ZP_05170248.1| hypothetical protein BpinM_16075 [Brucella pinnipedialis
           M163/99/10]
 gi|254708727|ref|ZP_05170538.1| hypothetical protein BpinB_00411 [Brucella pinnipedialis B2/94]
 gi|254714572|ref|ZP_05176383.1| hypothetical protein BcetM6_14787 [Brucella ceti M644/93/1]
 gi|254717469|ref|ZP_05179280.1| hypothetical protein BcetM_13911 [Brucella ceti M13/05/1]
 gi|256030252|ref|ZP_05443866.1| hypothetical protein BpinM2_06326 [Brucella pinnipedialis
           M292/94/1]
 gi|256160427|ref|ZP_05458116.1| hypothetical protein BcetM4_15574 [Brucella ceti M490/95/1]
 gi|256255633|ref|ZP_05461169.1| hypothetical protein BcetB_15393 [Brucella ceti B1/94]
 gi|260167927|ref|ZP_05754738.1| hypothetical protein BruF5_06077 [Brucella sp. F5/99]
 gi|261219302|ref|ZP_05933583.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261222836|ref|ZP_05937117.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|261315919|ref|ZP_05955116.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316219|ref|ZP_05955416.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261322363|ref|ZP_05961560.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261757366|ref|ZP_06001075.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|265987280|ref|ZP_06099837.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|265998795|ref|ZP_06111352.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|225616128|gb|EEH13176.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|260921420|gb|EEX88073.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|260924391|gb|EEX90959.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261295053|gb|EEX98549.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261295442|gb|EEX98938.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261304945|gb|EEY08442.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737350|gb|EEY25346.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99]
 gi|262553484|gb|EEZ09253.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|264659477|gb|EEZ29738.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 343

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 116/326 (35%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D +T L+   + +  +               +     L +  + +    +    +SQ+
Sbjct: 19  FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D   +   + ++V+ +                       + ++         +     
Sbjct: 79  MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213
           +        ++ ++       L+  +    +   ++ DL ++++  L+  V +       
Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198

Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVL 259
             G L E       I I+      ++  +F   S+   P+  V ++K+         E+ 
Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLANAIIQLNREIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R+   +GF  
Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
           ++    ++     + NRRI++ + +R
Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343


>gi|239813534|ref|YP_002942444.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus S110]
 gi|239800111|gb|ACS17178.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus S110]
          Length = 442

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +K  L   T      S++  R    F   S+ P+  ++ VL++IG+ LA     + I GH
Sbjct: 301 IKQGLVTVTDEADR-SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGEVLITGH 359

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +D  P R++    NW LS  RA +    L    V   R+ +  G A      A+D     
Sbjct: 360 SDNQPIRSLRYPSNWHLSAARADAVKGALTTL-VEPARM-RSDGKADAEPVAANDTPANR 417

Query: 329 SANRRIDILVED 340
           + NRR+DI++  
Sbjct: 418 ARNRRVDIVLLS 429


>gi|226944839|ref|YP_002799912.1| flagellar motor protein [Azotobacter vinelandii DJ]
 gi|226719766|gb|ACO78937.1| Flagellar motor protein [Azotobacter vinelandii DJ]
          Length = 275

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 8/188 (4%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
              + E+S++      LP  S     A +  +  +D+       L GL  D + K +   
Sbjct: 87  GQGNEERSLSPLSEGVLPAGSGLLEQAGRSLRDEKDV-DSTGDPLQGLPVDQLGKDIEVI 145

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
                +   I  +    +F  + +    + + VLQ++  VL  S   I + GHTD+ P R
Sbjct: 146 VKEGTVSFRISSE---ILFSSAQADLSLDGLRVLQQLVPVLNSSRHDIVVVGHTDSLPIR 202

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
           +     NW LS  RA S  + L  +GV+  R+  + G A  R     +S    + NRR++
Sbjct: 203 STRFPSNWELSGARAGSVVRYLEANGVARQRMRAV-GLADTRPLLENSSPEGRAGNRRVE 261

Query: 336 ILVEDRQG 343
           +++E  Q 
Sbjct: 262 LILETPQA 269


>gi|242277509|ref|YP_002989638.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120403|gb|ACS78099.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 241

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 17/236 (7%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           +K      E           +      +   +    D  K  D+  S+       +PP  
Sbjct: 8   KKPAQGGEEGGWALTLADMMTLLLCFFVLLLAIADVDQKKYKDVSDSLASAMGVDVPPKG 67

Query: 180 KEKILAMKRKKR--LQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
                      R  + D  + I         +       +  +     + I +   +   
Sbjct: 68  ANDTYEGAPVARRVISDQQRNIFEMQLEMARLVGRESDALKIKMRPDSVAIVL---KGGF 124

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
            F    +        VL KI   LA S   + + GH+D  P R+     NW LS  RA +
Sbjct: 125 FFPSGQADLTSGARRVLGKIAPTLAKSPYQVVVEGHSDNIPIRSKQFPSNWELSSARASA 184

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILVEDRQ 342
             + L+ +G S+DRI K+ G A       ++  N          NRR+ +LV   +
Sbjct: 185 VARYLLDNGFSKDRI-KVLGMADTAPAYPNEDDNGNAIPANQKRNRRVVLLVYPPK 239


>gi|260062810|ref|YP_003195890.1| putative flagellar motor protein MotB [Robiginitalea biformata
           HTCC2501]
 gi|88784378|gb|EAR15548.1| putative flagellar motor protein MotB [Robiginitalea biformata
           HTCC2501]
          Length = 287

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 19/229 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           TN  +     E N F  +N+Q+  +   +LT  + KG +     +LEKS+   +   L  
Sbjct: 54  TNDARLQTLEEQNAFLKANNQELINNMGNLTTLTAKGAE-----NLEKSLESLKEKDLTI 108

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              +  +  +    L  L + +   L  L  ++    +     +  + +SI D     +F
Sbjct: 109 RKLQDAVTRRDSVNLA-LVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 160

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295
              S         VL K+ +V+ +  +    + GHTD  P+R+    DNW LS  RA S 
Sbjct: 161 SSGSYNVTNAAKNVLGKVAQVVNNKPDFEFMVEGHTDNVPYRSGVLLDNWDLSAKRATSV 220

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            ++L    GV   R++  +G +++    ++D     + NRR  I+V  +
Sbjct: 221 VRILQNDFGVDPARMTA-AGRSYYVPLASNDTAANRAKNRRTRIVVLPK 268


>gi|42528265|ref|NP_973363.1| flagellar motor protein MotB [Treponema denticola ATCC 35405]
 gi|4426946|gb|AAD20620.1| flagellar motor protein MotB [Treponema denticola]
 gi|41819535|gb|AAS13282.1| flagellar motor rotation protein B [Treponema denticola ATCC 35405]
 gi|325474545|gb|EGC77731.1| flagellar motor protein MotB [Treponema denticola F0402]
          Length = 239

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQ 253
           LA  +   +S    +     +   +   GI+IS+        F   S+     E+   L 
Sbjct: 87  LASALKKAVSLFAPEIKTNKIAVTSDERGIVISLASD---VFFYPGSAELNIAESRDTLL 143

Query: 254 KIGEVLAH---STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            + + L+    ++    + GHTD+     N+ + NW LS  RA +    L   G  E R 
Sbjct: 144 NLAQFLSSQDLASYRFRVEGHTDSGVTDPNVWKSNWELSSARAINILHSLTDFGAQESRF 203

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             ++G+A  R   ++D     + NRR+DI++ D
Sbjct: 204 -SVAGYADTRPIFSNDTAEGRAYNRRVDIIILD 235



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLM 77
          +            W   YAD +T+++ FF++++  +  D     A+      +P G  L 
Sbjct: 3  RKKKHGPSAAGSGWLTTYADMVTLMLCFFVMLFEPSEVDVTQLMALSASISGDPTGGGLS 62

Query: 78 TASKGIFDEQN 88
           ++  + D  N
Sbjct: 63 VSAGRLSDLGN 73


>gi|182680245|ref|YP_001834391.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636128|gb|ACB96902.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 345

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 39/276 (14%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           EH  K+  + + G      +  +           +  +    +     ++ +   ++ D 
Sbjct: 71  EHAAKDKAEQETGQLKATLEAAQTAAKAEATRLQELVDAGNQATQSAEDRARLSLRALDA 130

Query: 164 EKSINKEENYFLPPLSKEKIL------------------AMKRKKRLQDLAKKISSTLSG 205
           EK ++ +    +  L+++                       + + ++ DL  +++  L+ 
Sbjct: 131 EKQLSTQAEAQVETLNQQIAALRGQLSSLQETLSASETRDQESRAQIADLGSRLNVALAQ 190

Query: 206 LVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            V +           ++ VL E     I+      ++  +FD   +   P     L  + 
Sbjct: 191 KVQELAHYRSDFFGRLRQVLGERPDLRIVGDRFVFQSELLFDSGQARLNPIGRQELDTLA 250

Query: 257 EVLAHS--------TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
             L             V+ + GHTD    +++    NW LS+ RA +    L   GV  D
Sbjct: 251 TALNDLVKTIPADLPWVMRVDGHTDKKQIKSVQFPSNWELSVARALAVVHYLTDKGVPPD 310

Query: 308 RISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           R++  +GF   +     D   +   NRRI++ + ++
Sbjct: 311 RLAA-AGFGSFQPLDPGDSEEALKRNRRIELKITEK 345


>gi|92119002|ref|YP_578731.1| hypothetical protein Nham_3542 [Nitrobacter hamburgensis X14]
 gi|91801896|gb|ABE64271.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 343

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 111/325 (34%), Gaps = 21/325 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D ++ L+   + +  +               +   + L T    + D  +  +    +
Sbjct: 20  FVDALSTLVLAIVFLLSVFLVVQFFLSQEVSGKDKALEQLNTKIAQLTDLLSLEKLGKLS 79

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D          S + +               N     N+Q ++   +     S     
Sbjct: 80  LGDEVSQLRAGLASAEAERDRVKGLYDGLAGAGNNAAGRNTQLNKALDSEKQVSSRALAQ 139

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------- 209
           +   T    ++ ++       L   +    + + R+ DL ++++  L+  V +       
Sbjct: 140 VEVLTQQISALRRQLAALEDALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSE 199

Query: 210 --NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
               ++ +L       ++      ++   FD + +  LPE    L K+   L    + I 
Sbjct: 200 FFGRLRTILGNRPDIRVVGDRFVFQSEVFFDTAQATLLPEGKAELDKVAGALIDLDKQIP 259

Query: 267 -------SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                   + GHTD  P  + + + NW LS  RA S  Q L+  GV   R+   +GF   
Sbjct: 260 HEIAWVLRVDGHTDVRPISSPVFKSNWELSSARAISVVQYLVSLGVPPQRLVA-AGFGEF 318

Query: 319 RLKIASDPMNS--ANRRIDILVEDR 341
           +        ++   NRRI++ + +R
Sbjct: 319 QPLDPGTTEDAYKRNRRIELKLTER 343


>gi|120554886|ref|YP_959237.1| flagellar motor protein MotD [Marinobacter aquaeolei VT8]
 gi|120324735|gb|ABM19050.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 260

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 13/195 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKRLQD 194
           SE             + +       ++  ++    +PP   E     ++ A  R + L+ 
Sbjct: 50  SETFTGVFNAPQRSLQPVTVGGQPVRAPQQQHEDVIPPPVTEAPRNPELDAEGRTEALRT 109

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A +++     L+   +   V  ET+   I +++    N+ +F    + P  ++  V++K
Sbjct: 110 MANQLAMEFDELINQGV---VSLETSSEWIELNL---PNSMLFGSGDAEPHYDSFEVIEK 163

Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I  VL +    + + G TD  P R +    NW LS  RA +  ++LM  G+  +R++ + 
Sbjct: 164 IASVLRNRDNAVKVEGFTDNQPIRTSRFPSNWELSTARAAAVARMLMMEGIEPERLAAV- 222

Query: 314 GFAHHRLKIASDPMN 328
           G+  ++    +D   
Sbjct: 223 GYGQYQPVARNDTEE 237



 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    D  +N   W I YADF+T+L AFF+VM+ +++ ++   K + + F       
Sbjct: 1   MRRRRPPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETFTGVFNAP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             + + +     P     Q   D+ I   +T+   + ++ +  + +  + + N +    +
Sbjct: 61  QRSLQPVTVGGQPVRAPQQQHEDV-IPPPVTEAPRNPELDAEGRTEALRTMANQLAMEFD 119

Query: 137 S 137
            
Sbjct: 120 E 120


>gi|254497489|ref|ZP_05110282.1| flagellar motor protein MotD [Legionella drancourtii LLAP12]
 gi|254353304|gb|EET12046.1| flagellar motor protein MotD [Legionella drancourtii LLAP12]
          Length = 255

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           + QD    I+ +LS L   N      ++  R    I + D ++  +F    +    E +V
Sbjct: 84  KFQDGLDDINQSLSELEDQN------YKINRQKGWIEL-DIKSGALFGSGDADLKAEALV 136

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L +I   L  S  ++SI G+TD  P        NW LS  RA S  +VL   G+   RI
Sbjct: 137 KLMQIAGKLKKSHAIVSIEGYTDNVPIETPQYPSNWELSATRAASVGRVLNAYGIDSHRI 196

Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILV-EDRQ 342
             ++G+        +  D   + NRR+ I++  +R+
Sbjct: 197 M-VTGYGDQYPIADNVTDVGRALNRRVSIIIAVNRK 231


>gi|70729063|ref|YP_258799.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf-5]
 gi|68343362|gb|AAY90968.1| motB protein [Pseudomonas fluorescens Pf-5]
          Length = 294

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 6/169 (3%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
               PL K+            D  K I+  +S    D I    +       + + I +  
Sbjct: 77  TPAKPLVKDSDQTDAGIAGASDPLKSIADDISAAFGDLISSNQMTVRGNE-LWVEI-ELN 134

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDR 291
           ++ +F    ++P  +   ++ K+ ++L      I + G TD  P +      NW LS  R
Sbjct: 135 SSLLFGSGDAMPSDQAFTIIDKVAKILKPFDNPIHVEGFTDNLPIQTAQYPTNWELSSAR 194

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + S  ++L   GV+  R++ + G+   +    +      + NRR+ ++V
Sbjct: 195 SASIVRMLAMQGVNPARMASV-GYGEFQPVANNATAEGRARNRRVVLVV 242



 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N   W + YADF+T+L AFF+VM+ I++ ++   K I +       +   +
Sbjct: 3   RRRQQEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISEALIGVFTDSDRS 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
            K       P     +    ++  + + K+S     G        + + ++I      
Sbjct: 63  LK-------PIPIGDERPKTVTPAKPLVKDSDQTDAGIAGASDPLKSIADDISAAFGD 113


>gi|47091738|ref|ZP_00229534.1| chemotaxis protein MotB [Listeria monocytogenes str. 4b H7858]
 gi|47020057|gb|EAL10794.1| chemotaxis protein MotB [Listeria monocytogenes str. 4b H7858]
          Length = 293

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 54  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 113

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 114 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 170

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 171 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 227

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 228 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 283


>gi|15615801|ref|NP_244105.1| flagellar motor protein MotS [Bacillus halodurans C-125]
 gi|10175862|dbj|BAB06958.1| BH3239 [Bacillus halodurans C-125]
          Length = 250

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 10/188 (5%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L  + D E            P  + +      +K   DL + ++     L  + + + + 
Sbjct: 60  LPSAIDFESPKEDRGEERKEPFDEGEY--GDEQKDEVDLDELLAEVEEFLEENELTEQIS 117

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G+++ + +Q    +F+   +  LP     L K+G ++     ++ + GHTD  P
Sbjct: 118 ATRDDRGVVLILQEQ---ALFETGEAEVLPGARPFLDKVGTLVELIPNIVKVEGHTDNRP 174

Query: 277 FRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
                   NW LS  RA S  + ++    V   R    +GF   R  + +        NR
Sbjct: 175 ISTYRYPSNWELSGARASSVIRYIIDHHNVDPSRFIA-TGFGDTRPVVPNTTEENLQQNR 233

Query: 333 RIDILVED 340
           R+ I++ D
Sbjct: 234 RVIIVISD 241



 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++            W + ++D MT+++ FF++++ ++  D    +AI + F    + +
Sbjct: 1   MKRRKRQ--PEKGAPRWMVTFSDLMTLILVFFILLFSMSVVDAQKFRAIAESFQ--QRQV 56

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
                   D ++P E   + + +   +        D 
Sbjct: 57  FEFLPSAIDFESPKEDRGEERKEPFDEGEYGDEQKDE 93


>gi|326392537|ref|ZP_08213903.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991422|gb|EGD50048.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 114

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299
           S+   PE   VL KIG +L      I + G TD  P  N     NW LS+ RA +  ++L
Sbjct: 1   SADVHPEEKDVLIKIGNMLKTLPNHIRVEGFTDDLPMHNSKFDSNWELSVIRATNVVKIL 60

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           +   G+   RIS + G+  +R  + +D       NRR+DI++ + +
Sbjct: 61  VNEVGIEPQRISAV-GYGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 105


>gi|298529615|ref|ZP_07017018.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511051|gb|EFI34954.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 251

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++LQ+  ++  + +     ++ ++G++      G  I++    +  +FD       PE  
Sbjct: 95  RQLQEAQQETFADIQYYQNEHGIEGIVGARLDEG-KITLT-LPSEVLFDLGEVELRPEGE 152

Query: 250 VVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306
            +LQ + ++   HS + I+I GHTD  P R   R  DNW +S  RA +  + L + G+  
Sbjct: 153 ELLQDMRDIFNRHSEQRINIEGHTDNIPPREGGRFEDNWEISSLRALNTLRFLKQEGIDP 212

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            R++  +G+A  +    +      + NRR++ ++E 
Sbjct: 213 GRMTA-TGYADLQPLYPNTTEGNRARNRRVEFVLER 247


>gi|293605836|ref|ZP_06688207.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553]
 gi|292815749|gb|EFF74859.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553]
          Length = 361

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L   ++ K V        +   I    N  +F    +   P  + V++++  +L  + 
Sbjct: 158 ESLGLGDLAKSVDVIINEQSVSFRIS---NELLFPSGQATLSPSGLDVIKRLAGILNKNA 214

Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             +S+ GH+D  P +      NW LS  RA S  + L+  GV+ +R+  + G+A  R   
Sbjct: 215 YQVSVEGHSDPVPIQTRQFASNWELSSSRATSVLRELVHDGVAPERLRAV-GYAETRPIE 273

Query: 323 ASDP--MNSANRRIDILVE 339
            +D     +ANRR++++++
Sbjct: 274 TNDTPAGRAANRRVELIMD 292


>gi|298209046|ref|YP_003717225.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83848973|gb|EAP86842.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 286

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 10/254 (3%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S +   DL   +  T++ ++      N   + +            Q ++  + +      
Sbjct: 20  SQKKYADLEAQQQETQDRLNTATVKLNSCLEEKAGATAKANALEDQVADLRRTNADLIET 79

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           KG     +T    ++ K          + K L     ++   +   + ++L G + +   
Sbjct: 80  KGNLTTLTTKGATNLEKSLESLKEKDLQIKTLRDAVTRK-DSVTLALVTSLKGALGNMAD 138

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           + +     +  + +SI D     +F   S         VL K+  V+    +    + GH
Sbjct: 139 EDIEINVEKGVVYVSISD---KLLFKSGSYNVTSRAKEVLGKVATVVNAKPDIEFMVEGH 195

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--M 327
           TD  P +N    DNW LS  RA S  ++L    GV   R++  +G +++    ++D    
Sbjct: 196 TDNVPIKNAVLEDNWDLSAKRATSVVRILQDEYGVPPQRMTA-AGRSYYIPVASNDTAEG 254

Query: 328 NSANRRIDILVEDR 341
            + NRR  I+V  +
Sbjct: 255 RAKNRRTRIVVLPK 268


>gi|330861237|emb|CBX71488.1| hypothetical protein YEW_CQ10830 [Yersinia enterocolitica W22703]
          Length = 89

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
           +N   I++KK+ A     ++ GSWKI YADFMT +MAFFLVMW+++ +       I +Y
Sbjct: 3  HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62

Query: 69 FNPFGKNLMTASKGIFDEQNPPERS 93
          F    K  +++ +   D  +P    
Sbjct: 63 FRTPLKVALSSGEKSSDSTSPIPGG 87


>gi|154244796|ref|YP_001415754.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158881|gb|ABS66097.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2]
          Length = 340

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 119/329 (36%), Gaps = 30/329 (9%)

Query: 37  YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           + D ++ L+  F+ +  +               +         +   ++ +  E+   + 
Sbjct: 18  FVDALSTLLLVFIFLLSVFMLTQFFLTQEMSGKDNVMQRLQAQIRQLTELLSLERATGQT 77

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           +      L      T+   D      +        E     L  +++ +  K+   R   
Sbjct: 78  TDGELATLRASLEATETERDRLKSQLSAAPAPTSDEGRTRAL--AREVDLQKDVAARAVA 135

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--- 209
           + + L +      ++ ++       L+  +    + + ++ DL ++++  L+  V +   
Sbjct: 136 QIELLNQQI---SALRRQMAALEEALNVAEKRDAESQTKITDLGRRLNVALAQRVQELTR 192

Query: 210 ------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                   ++ +L       ++      ++   FD+ S+ P PE +  L K+   +    
Sbjct: 193 FRSEFFGRLRDILGNRPDVRVVGDRFVFQSEVFFDRGSATPRPEALAELDKLAGAILDLE 252

Query: 264 EVI--------SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           + I         I GHTD  P        NW LS  RA +  Q L+  GVS   +   +G
Sbjct: 253 KSIPPDISWALRIDGHTDNRPIATPQFPSNWELSAARAIAVVQYLISKGVSPQHLIA-AG 311

Query: 315 FAHHRL--KIASDPMNSANRRIDILVEDR 341
           F  ++     ASD   + NRRI++ + +R
Sbjct: 312 FGEYQPIDPAASDEARARNRRIELKLTER 340


>gi|222149694|ref|YP_002550651.1| hypothetical protein Avi_3670 [Agrobacterium vitis S4]
 gi|221736676|gb|ACM37639.1| flagellar motor protein [Agrobacterium vitis S4]
          Length = 343

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 26/344 (7%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    D   +    +    +  +  +M    V  +            ++  N     +  
Sbjct: 5   RNRKRDRGADYWPGFVDALSTLLIAIMFLLTVFVVAQFVLSREISGKDEVLNRLNNQIAE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+   +       +L      ++          +                + +
Sbjct: 65  LTQMLALEKGGKQDLEDALANLQSSLDTSEKERSRLQSLLDTGAGNSAQAQVKIGELSGK 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    S+      +   L   I   E       +K++      + ++ DL ++
Sbjct: 125 LDEQQQVSARAMSQIDLLNQQIAALRAQIAAVEQALQASEAKDQ----NSQAKIADLGRR 180

Query: 199 ISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETI 249
           ++  L+  V +         G L E       I I+      ++  +F    +   P+  
Sbjct: 181 LNVALAQKVQELNRYRSDFFGRLREILSDRQNIRIVGDRFVFQSEVLFPSGGADMNPQGQ 240

Query: 250 VVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
             + K+   L    + I         + GHTD        R  DNW LS  RA S  + L
Sbjct: 241 EEMVKLANALIDLAKEIPPDINWVLRVDGHTDNVQLSGNGRYPDNWALSAARAVSVVKFL 300

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  GV  DR++  +GF   +     D     + NRRI++ + +R
Sbjct: 301 ISKGVPADRLAA-AGFGEFQPIAPGDTPEARAQNRRIELKLTER 343


>gi|313624928|gb|EFR94836.1| chemotaxis protein MotB [Listeria innocua FSL J1-023]
          Length = 275

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 96  TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKITTKYSEEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+    +   + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELSADKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIATNREKNRRVEIMVRP 265


>gi|121998797|ref|YP_001003584.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121590202|gb|ABM62782.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 242

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 8/230 (3%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
            +  +  + +Q+ R         +          +         +  +    +  +  E 
Sbjct: 3   EQTPTNRRTRQFNRQVQPEGEKDDDNSWLLVYLDVITLLLIVFVILLALLEPEEDDDREG 62

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQ 231
                L   + +       L+ L + +       V   + + G+        +   + D 
Sbjct: 63  LGDGILEGREHILEGEPSVLEGLPEPLDEADPVEVPAELEEAGIQAVGEEETLTFRLDD- 121

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
               +F+   +    E    + ++  +   +   +S+ GHTD  P        NW LS  
Sbjct: 122 --AVLFETGRAELQAEGQAAIDELIPIFQATGVRLSVEGHTDNIPIATGQFPSNWELSSA 179

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           RA +  + L + G+   R+  I G+   R    ++     + NRR++I +
Sbjct: 180 RASAVLRYLEEQGLDPRRMRAI-GYGDIRPIADNETAEGRAENRRVEITL 228


>gi|217965216|ref|YP_002350894.1| chemotaxis protein MotB [Listeria monocytogenes HCC23]
 gi|217334486|gb|ACK40280.1| chemotaxis protein MotB (Motility protein B) [Listeria
           monocytogenes HCC23]
 gi|307570225|emb|CAR83404.1| chemotaxis protein [Listeria monocytogenes L99]
          Length = 275

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+N+   +  + +  G+LI+I D
Sbjct: 96  TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265


>gi|16799769|ref|NP_470037.1| hypothetical protein lin0694 [Listeria innocua Clip11262]
 gi|16413146|emb|CAC95926.1| motB [Listeria innocua Clip11262]
 gi|313620085|gb|EFR91593.1| chemotaxis protein MotB [Listeria innocua FSL S4-378]
          Length = 275

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 96  NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKITTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+    +   + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELSADKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIATNREKNRRVEIMVRP 265


>gi|332291582|ref|YP_004430191.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169668|gb|AEE18923.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 327

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 113/314 (35%), Gaps = 12/314 (3%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           F   L+    +  + +       K +E  ++   K+  +    + D +   ++ ++    
Sbjct: 2   FKKSLLIILAISALTSCVPAKKFKDLEASYSRLRKDNRSLEDNVKDLKAELDKRNEIYDK 61

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           +S D   +   V+   G     K         +    S  S     +  ++ +   +L  
Sbjct: 62  VSKDLATSMTRVEELEGENASAKANLEQLQASYNALESNSSATIAENSQKNRQLLAELET 121

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFE 218
             +               L K +    +R  R+ +L   I++  + + V    +   L +
Sbjct: 122 KQNDLAEKTAALEAERTRLEKLQKDLAERSARVDELEGVIAAKDATMRVLKESISKALTD 181

Query: 219 TTRTGILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
               G+ +   D        N  +FD  S          ++++G VLA + ++ + I GH
Sbjct: 182 FEGKGLTVEQRDGKVYVSLENKLLFDSGSWTVGANGTKAVKQLGSVLADNPDIAVLIEGH 241

Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328
           TD  P+        NW LS  RA +  ++L  +   + +    +G   +     +D    
Sbjct: 242 TDNVPYGGSGNLAGNWDLSAKRATAIVEILRTNRDIDPKNLTAAGRGEYAPVAENDTAEN 301

Query: 329 -SANRRIDILVEDR 341
            + NRRI++++  +
Sbjct: 302 KAKNRRIEVILTPK 315


>gi|308273524|emb|CBX30126.1| hypothetical protein N47_D29350 [uncultured Desulfobacterium sp.]
          Length = 219

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L  S+  ++S+    NY    +        +  + ++++   +          NI   V 
Sbjct: 42  LTMSSINQRSLKNTFNYLKQSIGGSAYQGHRGSESIENIKAALK---------NIDGSVD 92

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            +    GI++S+ +     +F+   S+   E   +L  I  V       I I GHTD  P
Sbjct: 93  IKEDERGIVLSLHED---ILFEPGKSVIKKENYRILDSIAAVADACPNKIMIMGHTDDLP 149

Query: 277 FRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANR 332
            +      NW LS  R        + +  +  DR + + G+   R    ++     S NR
Sbjct: 150 VQVGEYESNWELSAYRGLYVLNYFINNKHLPPDRFN-VGGYGAFRPLFPNNSAKNRSLNR 208

Query: 333 RIDILVEDRQ 342
           R++I+ + ++
Sbjct: 209 RVEIIFKYKE 218



 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 1   MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           +N+   K + ND+ +I               +W +  +D + +++ FF+++  +++ +  
Sbjct: 3   INTKRSKIETNDETVI------------KTDTWMVTLSDIIMLMITFFVMLLTMSSINQR 50

Query: 61  TKKAIEQYFNP-FGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           + K    Y     G +     +G    +N   +++   ID S+D
Sbjct: 51  SLKNTFNYLKQSIGGSAYQGHRGSESIENI--KAALKNIDGSVD 92


>gi|332283607|ref|YP_004415518.1| hypothetical protein PT7_0354 [Pusillimonas sp. T7-7]
 gi|330427560|gb|AEC18894.1| hypothetical protein PT7_0354 [Pusillimonas sp. T7-7]
          Length = 443

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 201 STLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
             L+G +A  I + +L         +I +       +F   S     E I VL ++ + L
Sbjct: 287 RALTGFLAPEIRENLLAVRNEVDRSVIILH---GDGLFTSGSDELRSEYIPVLSRVADAL 343

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             S   I + G++D  P R +    NW LS  RA +   +L       +R+ +  G    
Sbjct: 344 NQSRGSILVSGYSDNVPIRTVRFPSNWELSQARADAVKALLQDRLTQPERV-RAEGRGDA 402

Query: 319 RLKIASDP--MNSANRRIDILVE 339
                ++     + NRR++I + 
Sbjct: 403 NPVAPNNTPANRARNRRVEITLL 425


>gi|325954396|ref|YP_004238056.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437014|gb|ADX67478.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 14/220 (6%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + N F       S+  ++++ ++ +    L K+     S   E    +  +++ + L  
Sbjct: 74  EQQNAFEALAQDSSKELQDNIEKNRDLLNQLAKTRSDLTSKETELQAKIKRINELENLLA 133

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +++K +  L + IS  L G       KG+        I +S+    N  +F         
Sbjct: 134 QQRKAIAKLKQSISDALRGFEG----KGITVYEKNGQIYVSM---ENKLLFSTGKWDVRQ 186

Query: 247 ETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKS 302
           E I  L ++  VL   +   I I GHTD+ P+       +DNW LS+ RA +  ++L K 
Sbjct: 187 EGISALVQLSSVLKKQNDLNILIEGHTDSVPYGAKQGDVQDNWDLSVMRATAVTKILQKD 246

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           GV   +++  +G + +      A++   + NRR++I++  
Sbjct: 247 GVRPTQMTA-AGRSKYIPIGDNATESGKAKNRRVEIIITP 285


>gi|94268092|ref|ZP_01291083.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93451732|gb|EAT02500.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 240

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSL 289
                F    + P   ++ +L+++ E+LA      + I GH+D  P  +     NW LS 
Sbjct: 123 EEKLAFASGRAEPREPSLPILERLAELLAGKPAYRVIIAGHSDDLPISSERYPSNWYLSS 182

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            RA +  + L + GV   R++   G A  + ++A+D     + NRR++I +   +
Sbjct: 183 ARAVAVAEYLQQQGVDPGRLT-TQGHAEFKPRVANDSPQNRAKNRRVEITLLRDE 236


>gi|71280429|ref|YP_268267.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H]
 gi|71146169|gb|AAZ26642.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H]
          Length = 329

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 115/326 (35%), Gaps = 71/326 (21%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           + K++ A++    +   W + YAD+MT++ A F+V++           A+        ++
Sbjct: 4   VRKRRAAVEHDNIH--RWLVSYADYMTLMFALFVVLY-----------AMAMVNEKPFES 50

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +  +   +F                S +E   +   D  +     K   +   N I  ++
Sbjct: 51  ITESFGRVFQA--------------SEEETKNRGHGDGVLMVNTSKTNIKLYGNGILDIA 96

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             +  ++ KN                                     I   K    L  L
Sbjct: 97  GPELLDNEKN----------------------------------LSNISDAKVGSNLSSL 122

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K++ + L  LV     +    +     + I +    +  +F   SS        +L  I
Sbjct: 123 EKELHTALYELVESGFAQ---LQIDGDWLEIEL---NSGLLFPSGSSSATLSAEAILTVI 176

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +V+  ++  I +RG+TD     N     NW LS+ RA +  +VL K G++  R+  I G
Sbjct: 177 YDVIGQASNFIRVRGYTDNQVINNEIYSSNWELSVFRATAILRVLEKLGLNPARM-AIEG 235

Query: 315 FAHHRLKIAS--DPMNSANRRIDILV 338
           +  +     +      + NR++ + +
Sbjct: 236 YGQYYPSADNLTSEGRAKNRKVVVAI 261


>gi|225164037|ref|ZP_03726322.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
 gi|224801343|gb|EEG19654.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
          Length = 253

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 5/194 (2%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
               +           K       P +          + L  LA+++   L  L      
Sbjct: 56  AAAGVMPMEKFRPETGKSSGEKDNPGTGLTDQKAVDLEYLNKLARELYRLL-NLDESRTD 114

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             +  + T  G+ + + D+   P+F    +        V+  +  ++      ++I GHT
Sbjct: 115 NPIDIQVTSDGLRVILYDRNGRPLFVDRGTELTEWGRFVMDNLAWLIDRDHFYVTIEGHT 174

Query: 273 DASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
            A    +    +   W LS DRA ++ + L +  VS   I ++ G+A  R  + +D  + 
Sbjct: 175 RAGLTLDDRPSSYTLWELSADRANASRRALTEHVVSPALIERVVGYADTRPLLDTDATSE 234

Query: 330 ANRRIDILV-EDRQ 342
           +N+R+ + +   R+
Sbjct: 235 SNQRVTLSLRLPRK 248



 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
               + G+WK+ YADF+T +MA F+V+W I+A D     +  +YF    K L+ A+ G+ 
Sbjct: 3   GNSGSSGAWKVAYADFVTAMMALFMVLW-ISAQDHQILISTARYFQAPTKPLLNAAAGVM 61

Query: 85  DEQ-NPPERSSQNKIDLSIDEHITKNSV 111
             +   PE    +    +    +T    
Sbjct: 62  PMEKFRPETGKSSGEKDNPGTGLTDQKA 89


>gi|90418921|ref|ZP_01226832.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90337001|gb|EAS50706.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 342

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 110/339 (32%), Gaps = 17/339 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    D + +    +    +  +  +M    V  +            ++  +     +  
Sbjct: 5   RNRRSDRSVDYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSREITGKDEVLDRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E++  + +     +L       +        +           +       + 
Sbjct: 65  LTQLLALERSTTQDNEDQIANLRASLAGVEEERSRLQEALESGSGSAAAASARVEGLQTA 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195
            SE  + S    S+      +   L + I   E       S++     K     +RL   
Sbjct: 125 LSEEQELSQRARSQVELLNQQLAALRQQIGALERALEVSESRDAESQTKIADLGRRLNVA 184

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             +    LS   +D   +     + R  I I       ++  +F   S +        + 
Sbjct: 185 LAQRVQELSRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGSDVLQEAGTDEMA 244

Query: 254 KIGEVL--------AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGV 304
           K+ E +        +    +I + GHTD  P       DNW LS +RA +  + L+  GV
Sbjct: 245 KLAEAIVALNREIPSDINWIIRVDGHTDNVPISGGRFEDNWELSTERAGAVVKYLISQGV 304

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             +R++  +GF  ++     +     + NRRI+  + +R
Sbjct: 305 PPERLAA-TGFGEYQPIDPDNTPEARARNRRIEFKLTER 342


>gi|124516288|gb|EAY57796.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum
           rubarum]
          Length = 261

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K    +   +   L  LV  +  KG +    T+ GI++ I   ++  +F    +    + 
Sbjct: 78  KATPQVQSVMIRALELLVQKSSEKGDMKVVQTKEGIVLRI---QSRFLFASGHARVRRKA 134

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAY-QVLMKSGVSE 306
           + VL+KI  +LA +   I + G+TD  P R      NW LS  RA +   ++L    +  
Sbjct: 135 VPVLRKIAALLARTNHEIRVHGYTDNQPIRTSRYPNNWALSTMRAVNVLTRLLEYGSIDP 194

Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
            R+   +GF   R   ++        NRR++IL+ +R+
Sbjct: 195 GRMGA-AGFGKFRPIASNLTPEGREKNRRVEILIMNRE 231



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          K    +   NL  W + YADF+T+L AFF++++ I + +    + +  
Sbjct: 3  KKPRHEEHENLERWLVSYADFITLLFAFFVMLYAIASVNTGKFRVLSN 50


>gi|290893982|ref|ZP_06556957.1| chemotaxis protein MotB [Listeria monocytogenes FSL J2-071]
 gi|290556428|gb|EFD89967.1| chemotaxis protein MotB [Listeria monocytogenes FSL J2-071]
          Length = 289

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 50  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109

Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S ++   A+N+   +  + +  G+LI+I D
Sbjct: 110 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIT---AENLGTKMTTKYSDEGLLITIRD 166

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 167 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279


>gi|295136349|ref|YP_003587025.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294984364|gb|ADF54829.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 316

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 15/228 (6%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           +        S     ++   ++  +S + ++L    + ++     E   L  L K+    
Sbjct: 80  QSNYENLKSSYDALEKNSSAAIAENSRQNRELLAQLEEKEKTLAAEQARLEKLQKDLAAR 139

Query: 186 MKRKKRLQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            +R   L+ L          +   +S  + D   KG+  E     + +S+    N  +F+
Sbjct: 140 SQRIDELEGLIAAKDAKMNALKDAISKALTDFEGKGLTVEQRDGKVYVSM---ENKLLFN 196

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR--DNWRLSLDRAYSA 295
             S     +    + ++G VLA + ++ + I GHTD  P+       DNW LS  RA + 
Sbjct: 197 SGSWAVNADGRQAVNQLGSVLAQNPDISVLIEGHTDNVPYGGNGPLKDNWDLSTKRATAI 256

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
            Q+L ++   + +    +G   +     +D     + NRRI++++  +
Sbjct: 257 VQILRENSNIDPQNLTAAGRGEYAPVATNDTAEGKAKNRRIEVILTPK 304


>gi|163781627|ref|ZP_02176627.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882847|gb|EDP76351.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1]
          Length = 235

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 9/155 (5%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           R K+  +L K+I+     L++  I    L   T   + +         ++   S  P P+
Sbjct: 84  RVKKFAELKKEITKIKEELLSMGIEADYLVTGTCMKLRV-----NTNRLYPLGSEEPYPQ 138

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306
              +   +   L   +  I+  G+TD  P  N     NW LS  RA S  ++ +  G  +
Sbjct: 139 AKELFLNMCSRLKPFSLPITFEGYTDNMPISNPRFPSNWELSAMRAVSVLRLFITCGYPQ 198

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           + +S + G+  H     +D       NRRI+  ++
Sbjct: 199 ELLSAV-GYGEHHPIAPNDTPANRERNRRIEFCIK 232



 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKNLMTA 79
             ++      +W   + D M++L+ FF++++ ++    +   + ++     FG   +  
Sbjct: 4  KKKEEECPKAPAWLTSFGDLMSLLLTFFILLYSMSIISLEKFYQVLKGLIEAFGGKQVIF 63

Query: 80 SKG 82
          S+G
Sbjct: 64 SEG 66


>gi|330722438|gb|EGH00277.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC2047]
          Length = 130

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +  I  VL +    IS+ GHTD+ P   ++ R NW LS  RA S    L K GV      
Sbjct: 1   MASIRTVLKNVEGKISVEGHTDSVPIATSVFRSNWDLSSARALSVAHELFKGGVLNSNRF 60

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILV 338
            ++GFA  +  +A+D     + NRR++I++
Sbjct: 61  MVTGFADAKPLVANDNAANRAKNRRVEIII 90


>gi|258404712|ref|YP_003197454.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796939|gb|ACV67876.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 248

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           M ++  L +  +++   +   + +  + + +     R  +++ + D     +FD   +  
Sbjct: 74  MAQQNNLNESLQRVYQNIKNRIDNLEVNENIKLVKDRGAVVLRLNDS---LLFDSGETAL 130

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            P    +L+++ +++      + + GHTD  P       NW +S++RA S  + L    +
Sbjct: 131 KPRAAPLLREVAQLVRPLHLDMRVEGHTDNVPVSRPGISNWDISIERAVSVVKFLTSRDL 190

Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
                   +G+   R  + +D     + NRR+D  +E  +
Sbjct: 191 LPPSRLSAAGYGDQRPLVRNDSPENRAKNRRVDFYLEQDE 230


>gi|94264345|ref|ZP_01288137.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93455239|gb|EAT05452.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSL 289
                F    + P   ++ +L+++ E+LA      + I GH+D  P  +     NW LS 
Sbjct: 123 EEKLAFASGRAEPREPSLPILERLAELLAGKPAYRVVIAGHSDDLPISSERYPSNWYLSS 182

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            RA +  + L + GV   R++   G A  + ++A+D     + NRR++I +   +
Sbjct: 183 ARAVAVAEYLQQQGVDPGRLT-TQGHAEFKPRVANDSPQNRAKNRRVEITLLRDE 236


>gi|239905020|ref|YP_002951759.1| hypothetical protein DMR_03820 [Desulfovibrio magneticus RS-1]
 gi|239794884|dbj|BAH73873.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 424

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 9/185 (4%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
               +++ ++         K +  A   +++ ++L     + ++ L  +   + +     
Sbjct: 45  PQALENLTRQLFQSKEEEKKAEKRAQDLERKTEELQTAYDALVADLRGEVDSRQIRVRQF 104

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           R  + I+ +D     +F   S+   P    +L ++G VLA   +  I + GHTD  P  +
Sbjct: 105 REKLEINFVD---KILFPSGSAEISPRGRDILTRVGAVLAKVKDKSIYVVGHTDNVPIHS 161

Query: 280 I-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                NW LS  RA S    +    G++ +R + + G A ++   ++        NRR+D
Sbjct: 162 ALFPSNWELSASRAASVIRHLSESGGLAPERFTAM-GRAFYQPVASNATPEGRQENRRVD 220

Query: 336 ILVED 340
           I+V D
Sbjct: 221 IIVAD 225


>gi|322435021|ref|YP_004217233.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162748|gb|ADW68453.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 255

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 15/192 (7%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           +  K    +TD   S+N        P+      A   + RL+++ K              
Sbjct: 63  QHSKTPPITTDGNSSLNLATAPIALPVPSAAESAEATEIRLKEVVKAQVEK-----KQLT 117

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
              V    T  G+++S+   R    F   S+   PE + VLQ +   L   +  + + GH
Sbjct: 118 SDAVSVRATGDGLVVSL---REAGFFASGSADVRPEALAVLQTVAAALPRQS--MRVEGH 172

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPM 327
           TD  P        NW LS  RA +  ++L+  + V   ++S  +G A  R     A+D  
Sbjct: 173 TDNIPIHTTQFATNWELSTARAATITRLLIAQNAVDPAQVSA-AGDAEFRPIADNATDAG 231

Query: 328 NSANRRIDILVE 339
            + NRR+DI++ 
Sbjct: 232 RAQNRRVDIILL 243



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK   +   +    W + YADF+T+L AFF+V++     D   +  +           
Sbjct: 1   MSKKKHPEHVNH--ERWLVSYADFITLLFAFFVVLFASGQNDKRKQVMLAH-----AVQS 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                GIFD+ +          + S++      ++ +   + + +    RL+  +     
Sbjct: 54  AFMHNGIFDQHSK-TPPITTDGNSSLNLATAPIALPVPSAAESAEATEIRLKEVVKAQVE 112

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +Q      S+    +      +      S + +       + +    A+ R+
Sbjct: 113 KKQLTSDAVSVRATGDGLVVSLREAGFFASGSADVRPEALAVLQTVAAALPRQ 165


>gi|299535178|ref|ZP_07048502.1| chemotaxis protein motB [Lysinibacillus fusiformis ZC1]
 gi|298729299|gb|EFI69850.1| chemotaxis protein motB [Lysinibacillus fusiformis ZC1]
          Length = 250

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 12/190 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D   S   + +     N       ++    +K ++ L ++   + + ++    + +    
Sbjct: 59  DGGTSFLEQPAPVPTPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEDQF 115

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             E T  G+L++I D     +FD   +   PE + + +++  +L       I I GHTD 
Sbjct: 116 ATEMTDEGLLVTIRDS---ILFDPGQATVKPEYVPIAKELSTMLESDPARNIVITGHTDN 172

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330
            P       N++LS+ RA    ++L++S   +   R S   G   +R    +D     + 
Sbjct: 173 VPAGPNFTSNFQLSVMRATKFLELLIESNDKLDPTRFSA-KGNGEYRAIAPNDTAEGRAK 231

Query: 331 NRRIDILVED 340
           NRR+++L++ 
Sbjct: 232 NRRVEVLIQP 241



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   SW + YAD +T+L+A F++++  ++ D +  + +   FN       +  +   
Sbjct: 10  HDEHIDESWLVPYADILTLLLAVFIILFASSSVDQEKLERMSAVFNQVFDGGTSFLEQPA 69

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
               P   S Q     S      +   ++K    N     +  +     +++       +
Sbjct: 70  PVPTPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEDQFATEMTDEGLLVTIR 129

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINK 169
           +S+  D  +     +   + K ++ 
Sbjct: 130 DSILFDPGQATVKPEYVPIAKELST 154


>gi|148559624|ref|YP_001259565.1| hypothetical protein BOV_1656 [Brucella ovis ATCC 25840]
 gi|148370881|gb|ABQ60860.1| OmpA/MotB domain [Brucella ovis ATCC 25840]
          Length = 314

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 93/215 (43%), Gaps = 19/215 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                +     ++  +L +S D EK ++      +  L+++       ++++  LA+++ 
Sbjct: 105 NEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQVELLNQQIAA---LRRQIAALAQRV- 160

Query: 201 STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
             L+   +D   +     + +  I I       ++  +F   S+   P+  V ++K+ + 
Sbjct: 161 QELNRYRSDFFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADA 220

Query: 259 L--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +             V+ + GHTD  P     R  DNW LS  RA +  + L+ +GV  +R
Sbjct: 221 IIQLNREIPDDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANR 280

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +   +GF  ++    ++     + NRRI++ + +R
Sbjct: 281 LVA-AGFGEYQPLDTANTADARARNRRIELKLTER 314


>gi|331006366|ref|ZP_08329676.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
 gi|330419826|gb|EGG94182.1| Flagellar motor rotation protein MotB [gamma proteobacterium
           IMCC1989]
          Length = 321

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 10/171 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           E        +           L  L       L  L+ +  ++     +    + IS+  
Sbjct: 58  EQQNTTETKQAAESPSASVIELPTLETAFYQQLLPLIEEGAIE---VSSNELWLQISLS- 113

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSL 289
             N  +FD  +  P  +   V+ +I  ++  +   I + G TD           NW+LS 
Sbjct: 114 --NRILFDIGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAINTAQFPSNWQLSA 171

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            RA +  Q+L  SGVS  ++S + G+   +     +S+   + NRR+ +++
Sbjct: 172 ARASAIVQLLSASGVSPSQLSAV-GYGEFQPIADNSSEAGRAKNRRVVLMI 221



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 5/183 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++       +    W + YADF+T+L AFF+VM+ ++  ++   + +    N F    
Sbjct: 2   LKRRSLDLHINH--ERWLVSYADFVTLLFAFFVVMYSVSQINESKYEELTSTLNGFFSEQ 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQRLENNIFY 133
              ++     ++P     +     +         ++      +  +   Q       +F 
Sbjct: 60  QNTTETKQAAESPSASVIELPTLETAFYQQLLPLIEEGAIEVSSNELWLQISLSNRILFD 119

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           + N + SE     + + +   KD      +E   +          S  ++ A +    +Q
Sbjct: 120 IGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAINTAQFPSNWQLSAARASAIVQ 179

Query: 194 DLA 196
            L+
Sbjct: 180 LLS 182


>gi|114321225|ref|YP_742908.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227619|gb|ABI57418.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 251

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 12/193 (6%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
            E+   L        S+ + E   L  L +              + + ++  L  L  D 
Sbjct: 65  PEQEPGLFAGQAGVPSVLEGEFGPLYALPESPAPVADPATEEDPVDQAMADELDALGDD- 123

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
               VL E       IS     +  +F    +    + + VL ++  VL  S   I++ G
Sbjct: 124 --IDVLVEAGSISFRIS-----DEILFPSGEAELTDQGLQVLGQLIPVLEVSDHRITVEG 176

Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           HTD  P        NW LS  RA    + L   G++  R+ + +G A  R     A+   
Sbjct: 177 HTDNVPIATERFPSNWELSTGRATRVLRFLEAEGIASTRL-QATGLADTRPIAGNATAEG 235

Query: 328 NSANRRIDILVED 340
            + NRR++++++ 
Sbjct: 236 RAQNRRVELVLQT 248



 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
                 SW +VY D MT+L+  F+VM           +       P           + +
Sbjct: 29  EDTEGESWLLVYLDVMTLLLVMFVVMLAFTEDHAGVPEQ-----EPGLFAGQAGVPSVLE 83

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
            +  P  +         D    ++ VD  +
Sbjct: 84  GEFGPLYALPESPAPVADPATEEDPVDQAM 113


>gi|163857259|ref|YP_001631557.1| OmpA-family protein [Bordetella petrii DSM 12804]
 gi|163260987|emb|CAP43289.1| OmpA-family protein [Bordetella petrii]
          Length = 334

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 8/235 (3%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
            S+     +   +     L   +  +    +                 L  + D   +  
Sbjct: 92  GSIARAGAAPAGQAPAHALLAALLPMPELPEQAELPGLAAALPVPATALAPAGDSPAAPA 151

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
                     +  +  +  + +   +  +    +++ L  D++  GV        I   I
Sbjct: 152 ANLRQTSDDAAGGEPPSAPKIEPEPEPTQPEPPSIAELGLDDLGDGVDVIVNEKSISFRI 211

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWR 286
               N  +F    ++  P  + ++ ++ +V+  S    +S+ GH+D  P +      NW 
Sbjct: 212 S---NELLFPSGQAVLSPAGLGLISRMAKVINRSQGYPVSVEGHSDPVPIQTRQFPSNWE 268

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           LS  RA S  + L++ GV   R+  + G+A      ++D     +ANRR+++++E
Sbjct: 269 LSAGRATSVLRELVRDGVDPGRLRAV-GYADTHPIASNDTPQGRAANRRVELIME 322


>gi|330808241|ref|YP_004352703.1| flagellar motor protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376349|gb|AEA67699.1| flagellar motor protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 294

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 10/192 (5%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           DS++        D            +    +           L+ +A  IS+    L++ 
Sbjct: 58  DSDRALKPIPIGDERPKTTTPAKPLVKDSEQVDAGIAGGSDPLKSIADDISAAFGDLISS 117

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N    +        + I +    ++ +F    ++P      ++ K+  +L      I + 
Sbjct: 118 N---QMTVRGNELWVEIEL---NSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVE 171

Query: 270 GHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
           G TD  P R      NW LS  R+ S  ++L   GV+  R++ + G+   +    +    
Sbjct: 172 GFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLASV-GYGEFQPVANNATAE 230

Query: 327 MNSANRRIDILV 338
             + NRR+ ++V
Sbjct: 231 GRARNRRVVLVV 242



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   ++  N+   W + YADF+T+L AFF+VM+ I++ ++   K I +       + 
Sbjct: 1   MARRRHTEEHVNH-ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDS 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHI 106
             A K I      P+ ++  K  +   E +
Sbjct: 60  DRALKPIPIGDERPKTTTPAKPLVKDSEQV 89


>gi|86130870|ref|ZP_01049469.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818281|gb|EAQ39441.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 326

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 115/310 (37%), Gaps = 12/310 (3%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           L+    V  +++       K +E  ++   K+    SK + + +   E++ + +    +D
Sbjct: 5   LICLLAVSALVSCVPAKKFKDLEAKYSRLRKDNRNMSKELAEAKAALEKTKEERDLALVD 64

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                N  +   G  +  K       + +    +  S     +  ++ +  ++L    + 
Sbjct: 65  LDALSNKYNEVSGEYDAAKANLAQLQDSYNALETNSSASIAENSKKNRQLLEELESKQND 124

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222
                         L + +     R  R+ +L   I++  + +    + +   L +    
Sbjct: 125 LAEKTAALEAERKRLERLQKDLADRSARVDELEGLIAAKDAKMRGLKDAISKALTDFEGK 184

Query: 223 GILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
           G+ +   D        N  +FD  S          ++++G VLA + E+ + I GHTD  
Sbjct: 185 GLTVEQRDGKVYVSLENKLLFDSGSWTVGTNGTKAVKQLGSVLADNPEIAVLIEGHTDNV 244

Query: 276 PFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
           P+        NW LS  RA S   +L ++   + +    +G   +     +D     + N
Sbjct: 245 PYGGSGNLQGNWDLSAKRATSIVNILRQNKRIDPKNLTAAGRGEYAPVAENDTPENKAKN 304

Query: 332 RRIDILVEDR 341
           RRI++++  +
Sbjct: 305 RRIEVILTPQ 314


>gi|114777572|ref|ZP_01452553.1| motb protein [Mariprofundus ferrooxydans PV-1]
 gi|114552043|gb|EAU54560.1| motb protein [Mariprofundus ferrooxydans PV-1]
          Length = 232

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 13/184 (7%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           K+  +  S  K E   +PPL  +K+++   ++ +  + +   + +   + D+ V+GV+  
Sbjct: 56  KAVSVLNSGTKTELQIIPPLQMQKLISP--RELMLAMRQNSRAIMKNSIMDHKVRGVILN 113

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-- 276
             R  + I      +  +FD+ S++  PE++  L K+ ++LA S   I ++GHT+A+   
Sbjct: 114 -DRLYLRI-----PDAILFDRGSAVLKPESVKTLVKLAQMLAMSPGNIRVQGHTNANIDL 167

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
             +   D W LSL RA S   +L   GVS  R+  ++G+   +           S NRR+
Sbjct: 168 DNSAFDDPWSLSLARAASVLHILEDEGVSPTRL-SLAGYGPSQPISTEATPFGRSKNRRV 226

Query: 335 DILV 338
           +I+V
Sbjct: 227 EIMV 230



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          IKKK  ++    N  +W   +AD +++++ FF+++  ++  D      IE  F      L
Sbjct: 3  IKKKWPVEYQA-NTEAWMTTFADLVSLMLTFFILLISMSTMDKTGLADIEASFRKAVSVL 61

Query: 77 MTASK 81
           + +K
Sbjct: 62 NSGTK 66


>gi|45658882|ref|YP_002968.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602127|gb|AAS71605.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 223

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 10/180 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +E       +  EK    +  + L+ + ++    +    A  ++    F      + I I
Sbjct: 30  EESKLENQRILGEKGDLSRSLEELKRIQEESDRRIQEYKA--LMSTFRFLIDAGKLKIKI 87

Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           ID R      +  +F   S+   P     ++++  +LA        I GHTD +P     
Sbjct: 88  IDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTGIKG 147

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340
             NW L+  RA +    ++K+G+ E RIS  S  A       + P N S+NRRI+I++  
Sbjct: 148 YTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIVIVP 207


>gi|330991015|ref|ZP_08314969.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1]
 gi|329761836|gb|EGG78326.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1]
          Length = 320

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 94/247 (38%), Gaps = 21/247 (8%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
                N+     +  +     + S  ++  + +  RDS + +      +    +N +   
Sbjct: 76  TTALQNEVASLHKAHDADVATATSLTAQLNQQTSERDSAQAR-TTALDEQVAQLNAQLAA 134

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGI 224
               L   +     R +++ +L  +++  L+  V             ++ V+ +     I
Sbjct: 135 LSTVLEATEDTVHDRDRQISNLGMQLNVALAKKVEQLQQYRSEFFGRLRSVMQDHKGVQI 194

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASP 276
           +      ++  +F    +   PE +  ++ + + L        A    ++ + GH D  P
Sbjct: 195 VGDRFVFQSEVLFPPGGADLSPEGVQEIRVLAKTLRQVAQQIPADVPWILRVDGHADRQP 254

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRI 334
             +    NW LS  RA +  ++L+  G+    ++  +GF+ ++     + P   + NRRI
Sbjct: 255 IHSAFPSNWELSSARAITVVKLLIAEGIDPHHLAA-TGFSDYQPLDKGTTPEAFARNRRI 313

Query: 335 DILVEDR 341
           +  + DR
Sbjct: 314 EFRLTDR 320


>gi|311106778|ref|YP_003979631.1| motility protein B 2 [Achromobacter xylosoxidans A8]
 gi|310761467|gb|ADP16916.1| motility protein B 2 [Achromobacter xylosoxidans A8]
          Length = 320

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L   ++ K V        +   I    N  +F    +   P  + V++++  +L  + 
Sbjct: 163 ESLGLGDLGKSVDVIINEQSVSFRIS---NELLFPSGQATLSPTGLDVIKRLAAILNKNE 219

Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             +S+ GH+D  P +      NW LS  RA S  + L++ GVS  R+  + G+A  R   
Sbjct: 220 YQVSVEGHSDPVPIQTRQFASNWELSSSRATSVLRELVRDGVSAQRLRAV-GYAETRPIE 278

Query: 323 ASDP--MNSANRRIDILVE 339
           ++D     +ANRR++++++
Sbjct: 279 SNDTQAGRAANRRVELIMD 297


>gi|328554593|gb|AEB25085.1| flagellar motor protein MotS [Bacillus amyloliquefaciens TA208]
          Length = 206

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 15/188 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  K      SI+   +   P  S +     ++   LQ++   I +        ++   +
Sbjct: 25  DAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLLLQNVKTYIKTY-------HLSSKM 77

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
             +    G+++ +   +   +F    +  L     VL +I  +L      I + GHTD+ 
Sbjct: 78  TAKRDERGVVLVL---QEAVLFQTGKADVLKNAEPVLHQIAVLLKTLPNAIQVEGHTDSR 134

Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
                    NW LS  RA S  +        S  R   + G+A  +    +  +     N
Sbjct: 135 RISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISV-GYADTKPVKDNKSIRHMKEN 193

Query: 332 RRIDILVE 339
           RR++I+++
Sbjct: 194 RRVEIVIK 201



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 3/199 (1%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            + +AD +T+++ FF++++ ++  D +  ++     +  G     AS    +E +  +  
Sbjct: 1   MVTFADLITLILVFFILLFSMSQIDAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLL 60

Query: 94  SQNKIDLSIDEHITKNSV---DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            QN        H++       D +      ++           L N++   H    L + 
Sbjct: 61  LQNVKTYIKTYHLSSKMTAKRDERGVVLVLQEAVLFQTGKADVLKNAEPVLHQIAVLLKT 120

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                 +   TD  +    +        S      ++     +D + K   ++       
Sbjct: 121 LPNAIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISVGYADTKP 180

Query: 211 IVKGVLFETTRTGILISII 229
           +         +    + I+
Sbjct: 181 VKDNKSIRHMKENRRVEIV 199


>gi|163858421|ref|YP_001632719.1| hypothetical protein Bpet4103 [Bordetella petrii DSM 12804]
 gi|163262149|emb|CAP44451.1| OmpA-family protein [Bordetella petrii]
          Length = 427

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L+  + D++V  V  E  R     S++  R   +F+  S+    + + VL ++ +
Sbjct: 275 RLAVFLAPEIRDDLV-TVRDEVDR-----SVVVLRGDGLFESGSAEVREQYLPVLSRVAD 328

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L  +   I +RG+TD  P R      NW LS  RA +  ++L     +  R+ +  G  
Sbjct: 329 ALRETQGNILVRGYTDNIPMRGARYPSNWHLSQARADAVKELLEARLDNPQRV-RAEGRG 387

Query: 317 HHRLKIASDP--MNSANRRIDILVE 339
                  +D     S NRR++I + 
Sbjct: 388 DADPVAPNDTAAGRSRNRRVEITLM 412


>gi|328470797|gb|EGF41708.1| hypothetical protein VP10329_08362 [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++   V  E  +  + IS+  Q    +F+  S+  +     V+ K
Sbjct: 287 IAERISMYLATEIGKDL---VTVEALQDRVRISLRAQD---LFESGSASVVAYIQPVISK 340

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L  +   I I GHTD  P   +    NW LSL RA S  + L+ +   + R+    
Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIP-E 399

Query: 314 GFAHHRLKIASD--PMNSANRRIDI 336
           G    R  + +D     + NRRI+I
Sbjct: 400 GLGDARPLVENDSEENRAMNRRIEI 424


>gi|325105320|ref|YP_004274974.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974168|gb|ADY53152.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 278

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 14/215 (6%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            + +      +   + +  DL  +    +S +  E   L    K +   +K  + +    
Sbjct: 59  KRDTAILNQKVNSLNGELADLRGNYSTLRSNSSSEINRLSEDLKRREQRLKEVEEMIRKR 118

Query: 197 KKISSTLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            + S+ L   +   ++    KG+  E     + +S+ D     +F   S +        L
Sbjct: 119 DEASNALKNKLQKALLGFQDKGLTVEMRDGKVYVSLTD---KLLFASGSIVIDERGKQAL 175

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDR 308
            ++  +L    E  I++ GHTD     N+   +DNW LS+ RA S  + L +   +S +R
Sbjct: 176 HELAVILNTQPEINIAVEGHTDNQRVVNLGQIKDNWDLSVLRATSVVRFLTVDEKISPNR 235

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           I   +G    +     +     S NRRI+I++  +
Sbjct: 236 IMA-TGKGEFQPISTDNSAESRSKNRRIEIVLSPK 269


>gi|149277137|ref|ZP_01883279.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39]
 gi|149232014|gb|EDM37391.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39]
          Length = 280

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 95/215 (44%), Gaps = 14/215 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           ++  K++    S       + + ++ + NK  +     ++K      KR++RL+++ + +
Sbjct: 57  AKLRKDTTGLSSALNDMKNQYSRMDSNYNKLRSNSSSEINKLSQDLKKREQRLKEVEEIL 116

Query: 200 SSTLSGLVA-DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVL 252
                        ++  L   T++G+ + I      +   +  +F   S +   +    L
Sbjct: 117 RKRDEATNQLKEKLQQALLGFTKSGLTVEIKNGKVYVSMTDKLLFPSGSIVIDEKGKQAL 176

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
            ++  VL    E  I++ GHTD+    N+   +DNW LS+ R+ S  + L + + V   R
Sbjct: 177 TQLATVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVRYLTEVNKVESVR 236

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           ++  +G    +  +  A+    S NRRI+I++  +
Sbjct: 237 MTA-TGKGEFQPLVSNANAEGRSKNRRIEIVLSPK 270


>gi|315186378|gb|EFU20138.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 239

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           ++++   +R + L +     +S    +   K V  +    G++I++        F  +S+
Sbjct: 74  VMSLPSMERGRALDQARKKAISAFQPEIRAKTVRVKQDERGLVITLAAD---AFFRSASA 130

Query: 243 IPL-PETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296
                     L K+  +L         I I GHTD  P         NW LS  RA +  
Sbjct: 131 ELNIEAARETLIKLSNLLTSPELEGRKIRIEGHTDDVPTDPAGPWPSNWELSSARAINVL 190

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             L   GV E+   ++ G A       +      + NRRIDI++  
Sbjct: 191 HFLSDYGVDENHF-QVMGLADTVPLADNSTPEGRAYNRRIDIVILS 235



 Score = 42.9 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          ++KK   D        + + Y D +T+L+ FF++M+     D    + I   F   G 
Sbjct: 1  MQKKKKCD---EGAPDYMLTYGDMVTLLLTFFVMMFTTATIDGYQLRLILSAFPGLGS 55


>gi|78485928|ref|YP_391853.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364214|gb|ABB42179.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 259

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 17/186 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGI 224
           SI++ +      L       + +K+++ +  + + S LS ++  N +            +
Sbjct: 61  SISEIKQDKFETLQTNLGQGLLKKEKVVNPLQNLESALSKVLESNQINPAEAMTLNENEL 120

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA 281
            I   D     +F+  S+   P++  ++  + + +         I I GHTD +P  +I 
Sbjct: 121 RI---DLPGELLFEVGSTQLEPKSKQLITALAKEINAFPLHNYLIEIEGHTDDTPIHSIR 177

Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSA-NR 332
              NW LS  RA S  +V   +G+++ R+  I G+A  R K  +        P N A NR
Sbjct: 178 FPSNWELSAGRAISVLKVFFNTGINKQRLKAI-GYADTRPKKPNRTKKGIAIPGNQATNR 236

Query: 333 RIDILV 338
           R++I V
Sbjct: 237 RVEIKV 242



 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 1  MNSHGDKN-----QENDQFIIIKK---KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW 52
          MN   DK+     QE+ +F    +   K    D       W I YAD MT+++AFF+++ 
Sbjct: 1  MNDISDKDLADAIQEHPEFQKKTRASLKKQSVDKEGGQDEWLITYADAMTLILAFFILIL 60

Query: 53 IINATDDDTKKAI 65
           I+    D  + +
Sbjct: 61 SISEIKQDKFETL 73


>gi|89093920|ref|ZP_01166865.1| OmpA/MotB [Oceanospirillum sp. MED92]
 gi|89081806|gb|EAR61033.1| OmpA/MotB [Oceanospirillum sp. MED92]
          Length = 265

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 99/243 (40%), Gaps = 15/243 (6%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD--- 162
           +T   V   +  +    +  R E  +  L+++ Q E   NS+     +     +  +   
Sbjct: 24  MTLLLVFFVLLFSLSSVEVDRFEKAMRSLNDAFQGEDGANSVIELPHEAPVKTEVPEEIE 83

Query: 163 --LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             L  +   +     P  ++ +   ++ +  L  +A ++S  L   +  ++ +  +    
Sbjct: 84  EVLPATNIADAEGEKPQENEAEFQDIELQTELNRMADEVSQELQAAINSDMAE--IGTPK 141

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279
              ++IS+   +   +FD  S+    E +     I  ++  +    + I GHTD  P + 
Sbjct: 142 DGKLVISL---KGDVVFDPGSAEFHAEMMTTFDSIVLLMKKNPDYKLRINGHTDNIPIQT 198

Query: 280 IA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA +  + +++ G+  +R++  +G+       ++      + NRR++ 
Sbjct: 199 TRFPSNWDLSAIRATNVLRYMVRGGIDLERVTA-TGYGESVPLESNRTLEGRAKNRRLEF 257

Query: 337 LVE 339
           ++E
Sbjct: 258 VLE 260


>gi|15639711|ref|NP_219161.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025949|ref|YP_001933721.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum
           SS14]
 gi|3024159|sp|O07887|MOTB_TREPA RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|2196896|gb|AAB61254.1| MotB [Treponema pallidum]
 gi|3323025|gb|AAC65689.1| flagellar motor rotation protein (motB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018524|gb|ACD71142.1| flagellar motor rotation protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060088|gb|ADD72823.1| chemotaxis protein MotB [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PET 248
           ++ Q LA  +   +S    +     +   +   G++IS+        F   SS     E+
Sbjct: 81  EKGQKLATALKKAVSLFAPEIKSNKIAVTSDERGLVISLTSD---SFFYPGSSDLNVEES 137

Query: 249 IVVLQKIGEVLAH---STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304
              L ++ + L+    +     I GHTD+     + + DNW LS  RA      L   G 
Sbjct: 138 REALLRVAQFLSDHALAGRRFRIEGHTDSVEVPEDGSTDNWELSTRRAVRVLHYLTDFGA 197

Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            E+R   ++G+A  R K +++     + NRR+DI++ D
Sbjct: 198 QENRF-SLAGYADTRAKFSNESPEGRAYNRRVDIVILD 234



 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74
          + +K            W   Y+D +T+++ FF++++     D    ++I      +P G 
Sbjct: 1  MARKRRAPRGAAQG--WLTTYSDMVTLMLCFFVMLFNPTEVDITVLQSIAASIVGDPTGG 58

Query: 75 NLMTASKGIFDEQN 88
           +  +S  + D  N
Sbjct: 59 GVSASSGRLADLGN 72


>gi|149375611|ref|ZP_01893380.1| Flagellar motor protein [Marinobacter algicola DG893]
 gi|149360013|gb|EDM48468.1| Flagellar motor protein [Marinobacter algicola DG893]
          Length = 277

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E      +         E     K    + DLA ++   L   VA    + +      +
Sbjct: 85  PEPMETAADEPEFIDERAEADAPTKIPAGVIDLASRMIQELEPEVA---SEALSVNYDES 141

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
            ++I   ++     F    +   P  + +++++ EVL+  T  + + G+TD  P  +   
Sbjct: 142 RVVIRFSEEAT---FRSGEAAIKPGMVPIIERVVEVLSGCTGDVLVAGYTDDRPIASGRY 198

Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             NW LS  RA S    L+    V  +R+   +G A     + +D     + NRR++I +
Sbjct: 199 RSNWDLSAARAVSVVHELVMNRQVPAERVVA-AGRAETNPLVPNDSPENRAKNRRVEIAI 257

Query: 339 EDRQ 342
            + Q
Sbjct: 258 RNPQ 261



 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 2/164 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74
           ++++ V          +W + +AD  T+L+ FF+++      D +  +A+       FG 
Sbjct: 2   VVRQPVKKKKHGRGSPAWIVTFADLATLLLTFFILLLSFAEMDVEKYRAMANSMAVAFGS 61

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           N +             E  + +  +           +D +  +    K    + +    +
Sbjct: 62  NQVLGDAVGGSPLTLIESDTVSLPEPMETAADEPEFIDERAEADAPTKIPAGVIDLASRM 121

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
               + E    +L+ + ++ + + + ++ E +    E    P +
Sbjct: 122 IQELEPEVASEALSVNYDESRVVIRFSE-EATFRSGEAAIKPGM 164


>gi|126649533|ref|ZP_01721774.1| flagellar motor protein MotB [Bacillus sp. B14905]
 gi|126593858|gb|EAZ87781.1| flagellar motor protein MotB [Bacillus sp. B14905]
          Length = 254

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 12/190 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D   S   + S     N       ++    +K ++ L ++   + + ++    + +    
Sbjct: 59  DGGTSFLEQPSPVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEGQF 115

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             E T  G+L++I D     +FD   +   PE I + +++  VL  +    I I GHTD 
Sbjct: 116 ATEMTDEGLLVTIRDS---ILFDPGQATIKPEYIPIAKELAGVLVSNPPRNIVITGHTDN 172

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330
            P       N  LSL RA + Y VL+ S   +  +  S   G+  +R    +D     + 
Sbjct: 173 VPAGPNFSSNLELSLMRASNFYMVLLDSNSQLKSENFSA-KGYGENRAIAPNDTAEGRAK 231

Query: 331 NRRIDILVED 340
           NRR+++L++ 
Sbjct: 232 NRRVEVLIQP 241



 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 52/144 (36%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   SW + YAD +T+L+A F++++  ++ D +  + +   F+       +  +   
Sbjct: 10  HDEHIDESWLVPYADILTLLLAVFIILFASSSVDQEKLERMSAVFSQVFDGGTSFLEQPS 69

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
              +P   S Q     S      +   ++K    N     +        +++       +
Sbjct: 70  PVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEGQFATEMTDEGLLVTIR 129

Query: 145 NSLTRDSEKGKDLCKSTDLEKSIN 168
           +S+  D  +     +   + K + 
Sbjct: 130 DSILFDPGQATIKPEYIPIAKELA 153


>gi|46906937|ref|YP_013326.1| chemotaxis protein MotB [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223317|ref|YP_002757424.1| motility protein (flagellar motor rotation) MotB [Listeria
           monocytogenes Clip81459]
 gi|254993370|ref|ZP_05275560.1| motility protein (flagellar motor rotation) MotB [Listeria
           monocytogenes FSL J2-064]
 gi|255522318|ref|ZP_05389555.1| motility protein (flagellar motor rotation) MotB [Listeria
           monocytogenes FSL J1-175]
 gi|46880203|gb|AAT03503.1| chemotaxis protein MotB [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225875779|emb|CAS04482.1| Putative motility protein (flagellar motor rotation) MotB [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467255|gb|EGF38335.1| chemotaxis protein MotB [Listeria monocytogenes 1816]
 gi|328475649|gb|EGF46398.1| chemotaxis protein MotB [Listeria monocytogenes 220]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 96  TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265


>gi|16802728|ref|NP_464213.1| hypothetical protein lmo0686 [Listeria monocytogenes EGD-e]
 gi|224498768|ref|ZP_03667117.1| hypothetical protein LmonF1_03321 [Listeria monocytogenes Finland
           1988]
 gi|224502009|ref|ZP_03670316.1| hypothetical protein LmonFR_05752 [Listeria monocytogenes FSL
           R2-561]
 gi|254830323|ref|ZP_05234978.1| hypothetical protein Lmon1_03142 [Listeria monocytogenes 10403S]
 gi|254900078|ref|ZP_05260002.1| hypothetical protein LmonJ_09695 [Listeria monocytogenes J0161]
 gi|255026595|ref|ZP_05298581.1| hypothetical protein LmonocytFSL_10100 [Listeria monocytogenes FSL
           J2-003]
 gi|284801016|ref|YP_003412881.1| hypothetical protein LM5578_0765 [Listeria monocytogenes 08-5578]
 gi|284994158|ref|YP_003415926.1| hypothetical protein LM5923_0720 [Listeria monocytogenes 08-5923]
 gi|5305456|gb|AAD41660.1| motility protein [Listeria monocytogenes]
 gi|16410075|emb|CAC98764.1| motB [Listeria monocytogenes EGD-e]
 gi|284056578|gb|ADB67519.1| hypothetical protein LM5578_0765 [Listeria monocytogenes 08-5578]
 gi|284059625|gb|ADB70564.1| hypothetical protein LM5923_0720 [Listeria monocytogenes 08-5923]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S ++   A+N+   +  + +  G+LI+I D
Sbjct: 96  NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265


>gi|255023068|ref|ZP_05295054.1| motility protein (flagellar motor rotation) MotB [Listeria
           monocytogenes FSL J1-208]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 96  TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265


>gi|330964668|gb|EGH64928.1| flagellar motor protein MotD [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 295

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  RA S  ++L   G++  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARAASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|120552993|ref|YP_957344.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120322842|gb|ABM17157.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 277

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E S + ++         E+    +    + DLA ++   L   VA    + +       
Sbjct: 85  PEPSESLQQQPEFIDERTERSETRQIPGGVLDLAGRLVRELEEEVA---SETLHVNYDED 141

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
            ++I   ++     F    +   PE I +++++  VL+  +  + + GH+D  P  +   
Sbjct: 142 QVVIRFSEEAT---FRSGDATIKPEMIPIIERVVSVLSACSGDVVVSGHSDDRPISSSQY 198

Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             NW LS  RA S    L+    +  +R+   +G A  R    +      + NRR++I +
Sbjct: 199 RSNWDLSAARAVSVVHELVLNRDIPAERVVA-AGRAETRPLAPNTSPENRAINRRVEIAI 257

Query: 339 EDRQ 342
            + +
Sbjct: 258 RNPE 261


>gi|258611826|ref|ZP_05242458.2| chemotaxis protein MotB [Listeria monocytogenes FSL R2-503]
 gi|293596186|ref|ZP_05229035.2| chemotaxis protein MotB [Listeria monocytogenes FSL J1-194]
 gi|293596895|ref|ZP_05265393.2| chemotaxis protein MotB [Listeria monocytogenes HPB2262]
 gi|300764498|ref|ZP_07074491.1| chemotaxis protein MotB [Listeria monocytogenes FSL N1-017]
 gi|258606459|gb|EEW19067.1| chemotaxis protein MotB [Listeria monocytogenes FSL R2-503]
 gi|293583586|gb|EFF95618.1| chemotaxis protein MotB [Listeria monocytogenes HPB2262]
 gi|293593262|gb|EFG01023.1| chemotaxis protein MotB [Listeria monocytogenes FSL J1-194]
 gi|300514852|gb|EFK41906.1| chemotaxis protein MotB [Listeria monocytogenes FSL N1-017]
 gi|332311111|gb|EGJ24206.1| Chemotaxis protein MotB [Listeria monocytogenes str. Scott A]
          Length = 289

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 50  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+++   +  + +  G+LI+I D
Sbjct: 110 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 166

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 167 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279


>gi|120610159|ref|YP_969837.1| hypothetical protein Aave_1472 [Acidovorax citrulli AAC00-1]
 gi|120588623|gb|ABM32063.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 452

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             ++   L   + + +      E        SI+  R   +FD +S+   P  + V+Q+I
Sbjct: 284 KPRLRQFLEPEIREGL-----VEVNDQADR-SIVTLRGDGLFDPASTEVKPRYVAVIQRI 337

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              L   +  + + G++D  P R      NW LS +RA +   +L ++     R+ +  G
Sbjct: 338 ASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTIADGSRL-RAEG 396

Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339
            A       +      + NRR++I++ 
Sbjct: 397 RAESDPIAPNSTPEGRALNRRVEIVLM 423


>gi|24213198|ref|NP_710679.1| flagellar motor protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24193917|gb|AAN47697.1| flagellar motor protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 223

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 10/180 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +E       +  EK    +  + L+ + ++    +    A  ++    F      + I I
Sbjct: 30  EESKLENQRILGEKGDLSRSLEELKRIQEESDRRIQEYKA--LMSTFRFLIDAGKLKIKI 87

Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           ID R      +  +F   S+   P     ++++  +LA        I GHTD +P     
Sbjct: 88  IDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTGIKG 147

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340
             NW L+  RA +    ++K+G+ E RIS  S  A       + P N S+NRRI+I++  
Sbjct: 148 YTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIVIVP 207


>gi|47095252|ref|ZP_00232863.1| chemotaxis protein MotB [Listeria monocytogenes str. 1/2a F6854]
 gi|258611605|ref|ZP_05234030.2| chemotaxis protein MotB [Listeria monocytogenes FSL N3-165]
 gi|258612097|ref|ZP_05267393.2| chemotaxis protein MotB [Listeria monocytogenes F6900]
 gi|293596468|ref|ZP_05261381.2| chemotaxis protein MotB [Listeria monocytogenes J2818]
 gi|47016323|gb|EAL07245.1| chemotaxis protein MotB [Listeria monocytogenes str. 1/2a F6854]
 gi|258601756|gb|EEW15081.1| chemotaxis protein MotB [Listeria monocytogenes FSL N3-165]
 gi|258608279|gb|EEW20887.1| chemotaxis protein MotB [Listeria monocytogenes F6900]
 gi|293589306|gb|EFF97640.1| chemotaxis protein MotB [Listeria monocytogenes J2818]
          Length = 289

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 50  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109

Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S ++   A+N+   +  + +  G+LI+I D
Sbjct: 110 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 166

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 167 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279


>gi|312962248|ref|ZP_07776740.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311283585|gb|EFQ62174.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 295

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 10/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+ +A  IS+    L++ N             + + I +  ++ +F  + ++P  +   +
Sbjct: 101 LKSIADDISAAFGDLISSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDQAFTI 154

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+  +L      + + G TD  P        NW LS  RA S  ++L   GVS  R++
Sbjct: 155 IDKVAAILKPFENPVHVEGFTDNVPISTAQYPTNWELSSARAASIVRMLAMQGVSPGRLA 214

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILV 338
            + G+   +    +      + NRR+ ++V
Sbjct: 215 SV-GYGEFQPVANNATVEGRARNRRVVLVV 243



 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K I Q       + 
Sbjct: 1   MSRRRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALIGVFNDA 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
             + K I   +  P   +  K  ++  +     
Sbjct: 61  DRSLKPIPIGEERPRTVTPAKPLVNDSDETAAG 93


>gi|308174663|ref|YP_003921368.1| flagellar motor rotation protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607527|emb|CBI43898.1| motility protein (flagellar motor rotation) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328912997|gb|AEB64593.1| motility protein (flagellar motor rotation) [Bacillus
           amyloliquefaciens LL3]
          Length = 206

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 15/188 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  K      SI+   +   P  S +     ++   LQ++   I +        ++   +
Sbjct: 25  DAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLLLQNVKTYIKTH-------HLSSKM 77

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
             +    G+++ +   +   +F    +  L     VL +I  +L      I + GHTD+ 
Sbjct: 78  TAKRDERGVVLVL---QEAVLFQTGKADVLKNAEPVLHQIAVLLKTLPNAIQVEGHTDSR 134

Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
                    NW LS  RA S  +        S  R   + G+A  +    +  +     N
Sbjct: 135 RISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISV-GYADTKPVKDNKSIRHMKEN 193

Query: 332 RRIDILVE 339
           RR++I+++
Sbjct: 194 RRVEIVIK 201



 Score = 42.6 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 3/199 (1%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            + +AD +T+++ FF++++ ++  D +  ++     +  G     AS    +E +  +  
Sbjct: 1   MVTFADLITLILVFFILLFSMSQIDAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLL 60

Query: 94  SQNKIDLSIDEHITKNSV---DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            QN        H++       D +      ++           L N++   H    L + 
Sbjct: 61  LQNVKTYIKTHHLSSKMTAKRDERGVVLVLQEAVLFQTGKADVLKNAEPVLHQIAVLLKT 120

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
                 +   TD  +    +        S      ++     +D + K   ++       
Sbjct: 121 LPNAIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISVGYADTKP 180

Query: 211 IVKGVLFETTRTGILISII 229
           +         +    + I+
Sbjct: 181 VKDNKSIRHMKENRRVEIV 199


>gi|153837220|ref|ZP_01989887.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|260366108|ref|ZP_05778568.1| flagellar motor protein [Vibrio parahaemolyticus K5030]
 gi|260879749|ref|ZP_05892104.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034]
 gi|260896795|ref|ZP_05905291.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466]
 gi|260903584|ref|ZP_05911979.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037]
 gi|149749483|gb|EDM60237.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810]
 gi|308087342|gb|EFO37037.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466]
 gi|308092264|gb|EFO41959.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034]
 gi|308109501|gb|EFO47041.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037]
 gi|308114754|gb|EFO52294.1| flagellar motor protein [Vibrio parahaemolyticus K5030]
          Length = 430

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++   V  E  +  + IS+  Q    +F+  S+  +     V+ K
Sbjct: 287 IAERISMYLATEIGKDL---VTVEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 340

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L  +   I I GHTD  P   +    NW LSL RA S  + L+ +   + R+    
Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIP-E 399

Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336
           G    R  + +D     + NRRI+I
Sbjct: 400 GLGDARPLVENDSEKNRAMNRRIEI 424


>gi|95930659|ref|ZP_01313393.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95133311|gb|EAT14976.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 303

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 110/305 (36%), Gaps = 22/305 (7%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           ++  F ++         T +           +L   ++ + + Q   +   Q   D    
Sbjct: 9   IIGLFALLSTSGCVSKATYQQQLDQNQTLQTDLYGTTEKLNNLQARYDIVEQQLEDAMAQ 68

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                +     +   ++ K   +  +       S   +  +    +  ++ +   +  D 
Sbjct: 69  NRALNDQNIAAMAEIDRLKNIFQARSQQQQEQLSALEQQQQELEAQQEQQQQRYQQLLDN 128

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           ++ + +E               + R+ RL  +A   +S ++ L  +     +     +  
Sbjct: 129 KQQLEQELER----------ERIAREARLAKMANTYNSLVANLEQEIERGEITINKLKDK 178

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI-- 280
           + +++++     +F   S+   P  I V++++G++L    +  I + GHTD         
Sbjct: 179 LTVNLVE---KILFPSGSADLTPAGIKVIRQVGDILKEVDDKDIRVEGHTDNLGISKALQ 235

Query: 281 --ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                NW LS  RA +  +VL +  G+  +++  I  +       ++D     + NRRI 
Sbjct: 236 AKFPSNWELSAARAANVVRVLQREVGIPGEKLE-IGAYGPFHPVSSNDTPEGRAQNRRIQ 294

Query: 336 ILVED 340
           I++  
Sbjct: 295 IVLVP 299


>gi|307718609|ref|YP_003874141.1| hypothetical protein STHERM_c09210 [Spirochaeta thermophila DSM
           6192]
 gi|306532334|gb|ADN01868.1| hypothetical protein STHERM_c09210 [Spirochaeta thermophila DSM
           6192]
          Length = 243

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           ++++   +R + L +     +S    +   K V  +    G++I++        F  +S+
Sbjct: 78  VMSLPSMERGRALDQARKKAISAFQPEIRAKTVRVKQDERGLVITLAAD---AFFRSASA 134

Query: 243 IPL-PETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296
                     L K+  +L         I I GHTD  P         NW LS  RA +  
Sbjct: 135 ELNIEAARETLIKLSNLLTSPELEGRKIRIEGHTDDVPTDPAGPWPSNWELSSARAINVL 194

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             L   GV E+   ++ G A       +      + NRRIDI++  
Sbjct: 195 HFLSDYGVDENHF-QVMGLADTVPLADNSTPEGRAYNRRIDIVILS 239



 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
          ++KK   D        + + Y D +T+L+ FF++M+     D    + I   F   G 
Sbjct: 5  MQKKKKCD---EGAPDYMLTYGDMVTLLLTFFVMMFTTATIDGYQLRLILSAFPGLGS 59


>gi|296114560|ref|ZP_06833213.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978916|gb|EFG85641.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 321

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 117/321 (36%), Gaps = 26/321 (8%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +W        T+LM    V+ +          ++         + +        +    E
Sbjct: 16  AWPGYVDALSTLLMVIIFVLLVF--VLGQAFLSVALNKRQQVLDQLQREVAHLSQMLSLE 73

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
           +S  + ++ S+     +++ D    ++   +  Q+            Q++   N L + S
Sbjct: 74  QSHNHSLEQSVATLQKEHAADEATTTSLTAQVSQQAAERDDAR---HQADELNNQLAQLS 130

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADN 210
            +   +  + ++ ++   + +  L  L  +  +A+ +K ++LQ    +    L  ++ D 
Sbjct: 131 AQLAAVSTALEISQNEVHDRDRKLDNLGMQLNIALAQKVEQLQRYRSEFFGRLRDVLKDT 190

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-------- 262
               V+ +             ++  +F   S+   PE I  ++ +G  L           
Sbjct: 191 KGIQVVGDR---------FVFQSEVLFPVGSADLSPEGIQEIKVLGRTLKQVAQQIPPSV 241

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             ++ + GH D  P       NW LS  RA +  ++L+  G+S  R    +GFA  +   
Sbjct: 242 PWILRVDGHADRLPIHTAFPSNWELSSARAITVVKMLIADGISP-RHLAATGFADFQPLD 300

Query: 323 ASDPMN--SANRRIDILVEDR 341
                   + NRRI+  + DR
Sbjct: 301 NGTTAEAFARNRRIEFRLTDR 321


>gi|254500358|ref|ZP_05112509.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222436429|gb|EEE43108.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 344

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 111/326 (34%), Gaps = 22/326 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           + D M  L+   + +  I               +     L      + +       SS  
Sbjct: 20  FVDAMATLLLVIIFLLSIFMIAQFFLSQQLSGRDTVLNRLNAQISELTELLALERASSGE 79

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             D  +    + +S + +        +    +        +Q      +      E    
Sbjct: 80  LEDTILGLQASLSSAEAEQSRLLGLLESSSGDAEAAGGRAAQLENLLDDERQVSQEALAQ 139

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------- 209
           +        ++ ++       L   +    + + ++  L +++++ L   V +       
Sbjct: 140 VELLNQQIAALRRQIAAANAALEASEAKEAESQAKIASLGRRLNAALVQRVQELSRYRSD 199

Query: 210 --NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
               ++ +L + +   ++      ++  +FD  S    PE    L K+ E +   +  I 
Sbjct: 200 FFGRLREILSQRSDISVVGDRFVFQSEVLFDSGSEDINPEGQQELDKLAEAILELSGQIP 259

Query: 267 -------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                   + GHTDA P     R  +NW LS  RA S  + L++ GV   R+   +GF  
Sbjct: 260 DEINWVLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLIEKGVDPKRLVA-AGFGE 318

Query: 318 HRLKIASDPMN--SANRRIDILVEDR 341
            +    S+  +  + NRRI++ + +R
Sbjct: 319 FQPLEESETPDALAKNRRIELKLTER 344


>gi|28900895|ref|NP_800550.1| hypothetical protein VPA1040 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809341|dbj|BAC62383.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 433

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A++IS  L+  +  ++   V  E  +  + IS+  Q    +F+  S+  +     V+ K
Sbjct: 290 IAERISMYLATEIGKDL---VTVEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 343

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L  +   I I GHTD  P   +    NW LSL RA S  + L+ +   + R+    
Sbjct: 344 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIP-E 402

Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336
           G    R  + +D     + NRRI+I
Sbjct: 403 GLGDARPLVENDSEKNRAMNRRIEI 427


>gi|229591826|ref|YP_002873945.1| flagellar motor protein MotD [Pseudomonas fluorescens SBW25]
 gi|229363692|emb|CAY51066.1| putative chemotaxis protein [Pseudomonas fluorescens SBW25]
          Length = 297

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 10/195 (5%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           +  D+++        +            +    +           L+ +A  IS+    L
Sbjct: 58  VFNDADRALKPIPIGEERPKTVTPAKPLVNDSDETAAGVGGTSDPLKSIADDISAAFGDL 117

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           ++ N             + + I +  ++ +F  + ++P  +   ++ K+  +L      I
Sbjct: 118 ISSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDQAFTIIDKVASILRPFENPI 171

Query: 267 SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            + G TD  P        NW LS  RA S  ++L   GV+  R++ + G+   +    + 
Sbjct: 172 HVEGFTDNFPINTAQYPTNWELSSARAASIVRMLAMQGVNPGRLASV-GYGEFQPVANNA 230

Query: 326 P--MNSANRRIDILV 338
                + NRR+ ++V
Sbjct: 231 TVEGRARNRRVVLVV 245



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++    +   N   W + YADF+T+L AFF+VM+ I++ ++   K I Q       + 
Sbjct: 3   VSRRRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISQALIGVFNDA 62

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
             A K I   +  P+  +  K  ++  +     
Sbjct: 63  DRALKPIPIGEERPKTVTPAKPLVNDSDETAAG 95


>gi|77457796|ref|YP_347301.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf0-1]
 gi|77381799|gb|ABA73312.1| putative chemotaxis protein [Pseudomonas fluorescens Pf0-1]
          Length = 296

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
               PL K+            D  K I+  +S    D I    +       + + I +  
Sbjct: 77  TPAKPLVKDAEQVDAGIAGASDPLKSIADDISAAFGDLISSNQMTVRGNE-LWVEI-ELN 134

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDR 291
           ++ +F    ++P      ++ K+  +L      I + G TD  P R      NW LS  R
Sbjct: 135 SSLLFGSGDAMPSDIAFNIIDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSAR 194

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + S  ++L   GV+  R++ + G+   +    +      + NRR+ ++V
Sbjct: 195 SASIVRMLAMQGVNPGRLASV-GYGEFQPVANNATAEGRAKNRRVVLVV 242



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K I +       +  
Sbjct: 3   RRRQHEEHVNH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKIISEALIGVFTDSD 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHI 106
            A K I   +  P+  +  K  +   E +
Sbjct: 61  RALKPIPIGEERPKTVTPAKPLVKDAEQV 89


>gi|224370727|ref|YP_002604891.1| MotB3 [Desulfobacterium autotrophicum HRM2]
 gi|223693444|gb|ACN16727.1| MotB3 [Desulfobacterium autotrophicum HRM2]
          Length = 272

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
                + IS+        FD   +   P+    L++IG +L  ++ V+++ GHTD  P  
Sbjct: 133 VADRAVRISL---AGDLFFDLGKADLKPQAQWRLRQIGRILQENSFVVNVIGHTDDMPNH 189

Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           +     NW LS  RA    + L+K   + E+R   +SG A  +    ++     S NRR+
Sbjct: 190 SEQYPTNWELSTARACRVARFLIKEAQLPEERFF-VSGHAWLQPLRPNNTAHNRSLNRRV 248

Query: 335 DILVEDRQ 342
           +I++   +
Sbjct: 249 EIVLMKER 256


>gi|254473145|ref|ZP_05086543.1| OmpA/MotB [Pseudovibrio sp. JE062]
 gi|211957866|gb|EEA93068.1| OmpA/MotB [Pseudovibrio sp. JE062]
          Length = 344

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 113/330 (34%), Gaps = 30/330 (9%)

Query: 37  YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           + D M+ L+  F+ +  I               ++  N   + +   ++ +  E+     
Sbjct: 20  FVDAMSALLLVFIFLLSIFMIAQFFLSQQLSGRDKVLNRLNQQIAELTELLALEKANVGD 79

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                  L +         D   G  N++               ++       S    ++
Sbjct: 80  LESTISSLQLGLEQASGERDRLQGLLNERSGQIDEAGGALAALQAKLEGEQNISSKALAQ 139

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--- 209
                 + + L + I   E+       +++    + + R+ DL K+++  L+  V +   
Sbjct: 140 VELLNQQISALRRQIAVLEDALDASEKRDR----ESQTRIADLGKRLNVALAQRVQELSR 195

Query: 210 ------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                   ++ +L + +   ++      ++  +F        P+    L  +   +    
Sbjct: 196 YRSDFFGRLREILAQRSDIEVVGDRFVFQSEVLFSSGDEEVNPQGRNQLDILASAILELE 255

Query: 264 EVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             I         + GHTDA P     R  DNW LS  RA S  + L+  GV  DR+   +
Sbjct: 256 GQIPDEINWVLRVDGHTDARPLSGTGRLRDNWELSAARAISVVKYLISKGVEPDRLVA-A 314

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           GF   +      +D   + NRRI++ +  R
Sbjct: 315 GFGEFQPLEEGTTDEAYAKNRRIELKLTQR 344


>gi|182418680|ref|ZP_02949956.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237669705|ref|ZP_04529682.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377457|gb|EDT75012.1| chemotaxis protein MotB [Clostridium butyricum 5521]
 gi|237654779|gb|EEP52342.1| putative chemotaxis MotB protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 248

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 10/178 (5%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGIL 225
           +  + N  +P  +          +  QD    I + +   + ++     +  +    G+ 
Sbjct: 63  MQSDGNSIIPMDTISDGTGKSDAELEQDKMVAIKAVMEEEITSEGYSDAINVDINEEGLY 122

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DN 284
           I++ D     +FD   +      I +L K+  +L      I I GHTD  P  N     N
Sbjct: 123 ITVQD---VALFDSGKADIHQNVIPLLSKVSAMLNGLENEIKIVGHTDNVPIDNSEFHSN 179

Query: 285 WRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             LS +RA +   +L+  ++G+  ++ + I  +   + K ++D     + NRR++I+V
Sbjct: 180 MDLSAERAINVRSLLVNSENGLDPEK-TSIEAWGELKPKASNDTEQGRAQNRRVEIVV 236



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77
           +       +   +W + Y+D +T+L+A F+VM+ +  TD    +A+ + FN    G   M
Sbjct: 3   RKKQHHEEHVDEAWLLPYSDMLTLLLALFIVMFAMGQTDKAKFQAMSKSFNQIFSGGTSM 62

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEH 105
             S G              K D  +++ 
Sbjct: 63  MQSDGNSIIPMDTISDGTGKSDAELEQD 90


>gi|303240000|ref|ZP_07326522.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592479|gb|EFL62205.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
          Length = 261

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E N      S        ++K + +  +++ + +SGL  D  V  V  +T+    +I  I
Sbjct: 94  ETNNESKSGSNADYDTENKQKAITEFKEEVQALISGLKIDEYVHVVDVKTS----VILRI 149

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLS 288
           D     +FD   +         L+K+GE++      I++ GHTD  P   ++   NW LS
Sbjct: 150 DS--AILFDVGKADIKESGKDTLKKVGELMDKLNTNIAVMGHTDNIPINTSLFPSNWELS 207

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
             RA +    L+    ++  +++  +G    R    +D       NRR+DI+++
Sbjct: 208 TRRATNVVVFLVNECNLNPTKLTA-TGNGEFRPIAPNDSEENRQKNRRVDIVID 260


>gi|114778393|ref|ZP_01453240.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
 gi|114551356|gb|EAU53913.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
          Length = 251

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 13/183 (7%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
                 S     +   P      I    +K+ ++D  ++I      L ++++   +  + 
Sbjct: 70  KMQAPSSPQNTTSEGTPVSDNATIQRQGQKEGMEDNMRRI------LGSNSLGGVMDVKM 123

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           +   I + +       +F    S     + + L+ + +VL   T  I + GH+D++P   
Sbjct: 124 SPGQIRLQM---DAALLFKPGQSELDESSRIPLKNLAKVLQTYTGKIEVAGHSDSTPLAG 180

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                NW LS  RA +  + L+  G+   R+   +G+A  R   ++      + NRR++ 
Sbjct: 181 RGYQSNWELSTMRATAVVKALIDFGIEPGRLHA-AGYADTRPLASNATAEGRAKNRRVEF 239

Query: 337 LVE 339
            +E
Sbjct: 240 TIE 242


>gi|169825896|ref|YP_001696054.1| chemotaxis protein motB [Lysinibacillus sphaericus C3-41]
 gi|168990384|gb|ACA37924.1| Chemotaxis protein motB (Motility protein B) [Lysinibacillus
           sphaericus C3-41]
          Length = 235

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 12/190 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D   S   + +     N       ++    +K ++ L ++   + + ++    + +    
Sbjct: 40  DGGTSFLEQPAPVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEGQF 96

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             E T  G+L++I D     +FD   +   PE I + +++ +VL  +    I I GHTD 
Sbjct: 97  ATEMTDEGLLVTIRDS---ILFDPGQATIKPEYIPIAKELADVLVSNPPRNIVITGHTDN 153

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330
            P       N  LSL RA + Y VL+ S   +  +  S   G+  +R    +D     + 
Sbjct: 154 VPAGPNFSSNLELSLMRASNFYMVLLDSNSQLKSENFSA-KGYGENRAIAPNDTAEGRAK 212

Query: 331 NRRIDILVED 340
           NRR+++L++ 
Sbjct: 213 NRRVEVLIQP 222



 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 49/135 (36%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94
           + YAD +T+L+A F++++  ++ D +  + +   F+       +  +      +P   S 
Sbjct: 1   MPYADILTLLLAVFIILFASSSVDQEKLERMSAVFSQVFDGGTSFLEQPAPVPSPNADSD 60

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
           Q     S      +   ++K    N     +        +++       ++S+  D  + 
Sbjct: 61  QTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEGQFATEMTDEGLLVTIRDSILFDPGQA 120

Query: 155 KDLCKSTDLEKSINK 169
               +   + K +  
Sbjct: 121 TIKPEYIPIAKELAD 135


>gi|326798978|ref|YP_004316797.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326549742|gb|ADZ78127.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 269

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           NQ  +  +++N+      ++      +   R +   ++L  S+   K +          L
Sbjct: 40  NQGWRTAQIKNDNLEDELAKLRADTASLGRRLASLEENLSSSSSEAKKLAANLAEREERL 99

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            + + +  KR++    L  K+   L G        G+  +     + + + D     +F 
Sbjct: 100 KEVEDVLRKREEAGNQLKDKLQRALLGFKE----SGLTVDMREGKVYVLLAD---KLLFS 152

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295
             S I        L ++ +VL    E  +++ GHTD    R++   +DNW LS+ R+ S 
Sbjct: 153 SGSIIIDQRGKQALAELAKVLNTQPEINMAVEGHTDNQKVRSLGQIKDNWDLSVLRSTSV 212

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            + L  + G+   R+   +G         +D     SANRRI+I++  +
Sbjct: 213 VRYLTEEEGIDPKRLIA-TGKGEFTPVDTADTPEARSANRRIEIVLSPK 260


>gi|205374484|ref|ZP_03227280.1| flagellar motor protein MotS [Bacillus coahuilensis m4-4]
          Length = 211

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           +        + E  + ++E               + K+ L  L  +I   L     +++ 
Sbjct: 32  ENPSASPEVEKEDDMVQKELEDNDAPPNTDAGEPQTKEELDQLLDEIQQYLDENKLNDVA 91

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
              +   T  G+++ + +Q    +F   +++ + +    L K+ E+L+    +I I GHT
Sbjct: 92  ---VASRTERGVVLVLQEQ---VLFQSGNAVIISDAYPFLDKVAELLSSIPNMIKIEGHT 145

Query: 273 DASPFR-NIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA 330
           D  P   ++   NW LS  R+    +  + +  +   R   + G+   R    +D  ++ 
Sbjct: 146 DNRPISTSVFPSNWELSAARSSGVIRYFISNHQLDPTRFIAV-GYGDTRPLAPND--SAE 202

Query: 331 N 331
           N
Sbjct: 203 N 203


>gi|146298593|ref|YP_001193184.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153011|gb|ABQ03865.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 314

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 126/300 (42%), Gaps = 13/300 (4%)

Query: 49  LVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK 108
           LV+  ++AT   +KK I         +L   ++ I D +N   + ++N+++L  D+ +TK
Sbjct: 9   LVVLALSATSCVSKK-IYNDLETKYSDLKKENRSIAD-ENADLKKAKNQLELDRDK-LTK 65

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKS 166
           +    K     QK      +     L +S  +  ++  ++L ++  K ++L    + +  
Sbjct: 66  DLASTKDDLAKQKADLAAEQKKYKVLQDSYNALEKNSNDALEKNMAKNRELLAQLEAKGK 125

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
              +E   L   +             ++  +K+  TLS  +     KG+  E     + +
Sbjct: 126 ALADEQARLDKTASRLKELEDMIAAKEEAMRKLKETLSKALTGFEGKGLTVEHKNGKVYV 185

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--D 283
           S+    N  +F+  S     E    + ++G+VL  + +  + I GHTD  P+       +
Sbjct: 186 SM---ENKLLFNSGSWAVGTEGRRAVVELGKVLGDNPDLSVLIEGHTDDDPYAGSGPIAN 242

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           NW LS  RA +   +L ++     +    +G +      ++      + NRRI+I++  R
Sbjct: 243 NWDLSTKRATAIVAILSENPKINKQKLTAAGRSEFSPLASNATPEGKAKNRRIEIILTPR 302


>gi|116332026|ref|YP_801744.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125715|gb|ABJ76986.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 224

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +E       + +EK+   +    L+ + ++    +       ++           + I I
Sbjct: 31  EESKLENQRILEEKVNLSRSLNELKRIQEESELRIQEY--KRLIATFRSLIDAGKLKIKI 88

Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           ID R      +  +F   S+      I  ++++  +LA        I GHTD +P     
Sbjct: 89  IDGRMVVVLSSDILFPVGSAFLSSAGIASIREVTTLLASLGGKRFQIEGHTDDTPTGIKG 148

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVED 340
             NW L+  RA +    ++K+G+ E+RIS  S  A       + P   SANRRI+I++  
Sbjct: 149 YTNWELASSRALNVLHTMIKAGMPEERISAASMGASRPALPNTSPENRSANRRIEIVIVP 208


>gi|27376621|ref|NP_768150.1| hypothetical protein bll1510 [Bradyrhizobium japonicum USDA 110]
 gi|27349762|dbj|BAC46775.1| flagellar motor protein [Bradyrhizobium japonicum USDA 110]
          Length = 342

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 107/341 (31%), Gaps = 21/341 (6%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTV---LMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +    D   N    +    +  +     L++ FLV+    + +   K    +  N     
Sbjct: 5   RGRRSDGAFNYWPGFVDALSTLVLSIVFLLSVFLVVQFFLSQEVSGKDKALEQLNAKIAQ 64

Query: 76  LMTASK----GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
           L         G     +   +          +    K   D    + N  +         
Sbjct: 65  LNELLSLEKLGKLTLDDQVSQLKAGLASAESERDRIKGLYDGLAAAGNDAQGKSTELGKA 124

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                +  +         + +      +   LE++++  E       ++   L  +    
Sbjct: 125 LDSEKAVSARALAQIEVLNQQISALRRQLAALEEALDASEKRDKESQNRIADLGSRLNVA 184

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    +++S   S       ++ +L       ++      ++   FD   +  LPE    
Sbjct: 185 LAQRVQELSRYRSEFFGR--LRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGRAE 242

Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302
           L  +   L    + I         + GHTD  P      + NW LS  RA S  Q L+  
Sbjct: 243 LDTVANALIELDKKIPAEIAWVLRVDGHTDVRPVSGASFKSNWDLSAARAISVVQYLISL 302

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           GV   R+   +GF   +    ++  ++   NRRI++ + +R
Sbjct: 303 GVPAQRLVA-AGFGEFQPLDTANTEDAYKRNRRIELKLTER 342


>gi|149919675|ref|ZP_01908153.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
 gi|149819446|gb|EDM78876.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
          Length = 262

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 19/239 (7%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           + +   + ++  + +  + E      +N +     +    R +E   ++ +     K + 
Sbjct: 23  DELQAALDASQAELKKTQKELEAERQANVELEAENQTLQERIAELEAEIEQLERQIKDLA 82

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTL-SGLVADNIVKGVLFETTRTGI 224
           ++       L++ +    KR+  LQ   DL   +   + +G +     +G L      GI
Sbjct: 83  EKAGLTEKELAELRAEKAKREAELQVYRDLFASLKKMVDAGTIKVGFREGRLVVKLDEGI 142

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARD 283
                      +FD   +    E    L ++   L        + GHTD  P +    + 
Sbjct: 143 -----------LFDSGRAKLKKEGQAALTELIAPLRDVNRDWIVAGHTDNVPIKTAKFQS 191

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           NW LS  RA      L+ +G+  +RI   +G+A       +      + NRRI+I++  
Sbjct: 192 NWELSSARAVEVVTFLIDTGMPAERIGS-AGYAEFDPVADNSSPEGRAQNRRIEIVLMP 249


>gi|294085848|ref|YP_003552608.1| flagellar motor protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665423|gb|ADE40524.1| flagellar motor protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 389

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 99/262 (37%), Gaps = 21/262 (8%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L  D     N     +    ++         I        S+   N     +    ++ +
Sbjct: 125 LQSDTETALNDAQKNLAEREEQLHIVEGTLAIADARAKTDSQTIDNLKAETNASRAEIAQ 184

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------N 210
            T+   ++  +       L++++  A K K  + +L K +++ L+  V +          
Sbjct: 185 MTNALAALKAQLESLQNLLAEKEAQATKDKIAIANLGKSLNNALASRVQELQRFRSEFFG 244

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP----LPETIVVLQKIGEVLAHSTEVI 266
            ++ +L       I+      ++  +F    +        +   +   + E+     + I
Sbjct: 245 RLRDILKGRNDVQIVGDRFVFQSEVLFAPGQADIGDSGREQMTKLAVALAEIAREIPDDI 304

Query: 267 S----IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           +    + GHTD  P R     DNW LS +RA S  + L+  G+  +R++  +G+  H+  
Sbjct: 305 NWVLQVDGHTDDIPIRAGRYADNWDLSTERALSVVRFLISQGLPPNRLAA-TGYGEHQPL 363

Query: 322 IASDPMNSA--NRRIDILVEDR 341
           I  +  ++   NRRI++ +  R
Sbjct: 364 INENSEDARQKNRRIELKITQR 385


>gi|317407354|gb|EFV87320.1| OmpA-family protein [Achromobacter xylosoxidans C54]
          Length = 332

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
           N  +F    +   P  + V++++  +L  +   +S+ GH+D  P +      NW LS  R
Sbjct: 187 NELLFPSGQATLSPSGLDVIKRLAAILNKNDYQVSVEGHSDPVPIQTRQFASNWELSSSR 246

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           A S  + L++ GV+  R+  + G+A  R   ++D     +ANRR++++++
Sbjct: 247 ATSVLRELVRDGVAGSRLRAV-GYAETRPIESNDTPAGRAANRRVELIMD 295


>gi|255530239|ref|YP_003090611.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343223|gb|ACU02549.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 280

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           ++  K++    S       + ++++ + +K  +     ++K      KR++RL+++ + +
Sbjct: 57  AKLRKDTTGLSSALNDMKSRYSEMDNNYSKLRSNSSTEINKLSADLKKREQRLKEVEEIL 116

Query: 200 SSTLSGLVA-DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVL 252
                        ++  L   T++G+ + I      +   +  +F   S I   +    L
Sbjct: 117 RKRDEATNKLKEKLQQALLGFTQSGLTVEIKNGKVYVSLTDKLLFPSGSIIIDEKGKQAL 176

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
            ++ +VL    E  I++ GHTD+    N+   +DNW LS+ R+ S  + L +   V   R
Sbjct: 177 TQLADVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVRFLTEICKVQPVR 236

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           ++  +G    +    +      S NRRI+I++  +
Sbjct: 237 MTA-TGKGEFQPLGPNTSAESRSKNRRIEIVLSPK 270


>gi|94264078|ref|ZP_01287877.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93455494|gb|EAT05684.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 235

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++ K I      L    +   V  E     IL+ I D      FD   +    +   +L 
Sbjct: 67  EVRKPIQQVFEDLQEAGL---VTVEDQEEEILVRIQD---AVAFDTGRAEIKGDFRELLD 120

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           ++GE++  S   + + GHTD  P R  A    NW LS  RA +  + L+ +  +  DR++
Sbjct: 121 QLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRDRLA 180

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            ++  A  +    +D     +ANRR++  +   +
Sbjct: 181 AVA-HADGKPVATNDTAEGRAANRRVEFRIRPGE 213


>gi|116872075|ref|YP_848856.1| chemotaxis (flagellar motor rotation) protein MotB [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740953|emb|CAK20073.1| chemotaxis (flagellar motor rotation) protein MotB [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 275

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 94/237 (39%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +     ++ E          +     N       KG D      + K++++++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGKGPDDPNVNAVLKAMDEQDKKKDA 95

Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
              ++   A       + +++++   K+I S ++   A+ +   +  + +  G+LI+I D
Sbjct: 96  NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AERLGAKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265


>gi|315281340|ref|ZP_07869986.1| chemotaxis protein MotB [Listeria marthii FSL S4-120]
 gi|313615016|gb|EFR88514.1| chemotaxis protein MotB [Listeria marthii FSL S4-120]
          Length = 275

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171
             +     ++ E          +     N      EKG D      + K++ +++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95

Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S ++   A+N+   +  + +  G+LI+I D
Sbjct: 96  NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287
                +F   S+        + ++IGE+ A     +   + GHTD  P   +I   NW L
Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAVNREKNRRVEIMVRP 265


>gi|66046660|ref|YP_236501.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257367|gb|AAY38463.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330972462|gb|EGH72528.1| flagellar motor protein MotD [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 295

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           SI   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +  + +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|330899454|gb|EGH30873.1| flagellar motor protein MotD [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940674|gb|EGH43692.1| flagellar motor protein MotD [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330976021|gb|EGH76087.1| flagellar motor protein MotD [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 295

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +  + +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|225012121|ref|ZP_03702558.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003676|gb|EEG41649.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 90/235 (38%), Gaps = 12/235 (5%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
               G   + +       +   +   + +   +NS  +  E                 + 
Sbjct: 61  QETEGYLQRSRDSVSEGLSQLKILRKEYALLEQNSDQKIQESIGANNALLKEIAVKEAQL 120

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
                 + + ++L  ++K+ L +L K++S  L         KG+  E     + IS+   
Sbjct: 121 LARSERVDQLELLMSEQKEALLELKKRLSDALLNFEG----KGLTVEQRNGKVYISM--- 173

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLS 288
            N  +F   S     +    L ++G VLA + + V+ I GHTD  PF        NW LS
Sbjct: 174 ENKLLFKSGSWNVGSQGQEALGQLGTVLAENPDIVVVIEGHTDNVPFSPKEALESNWDLS 233

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
             RA +  ++L+ +     +    +G + +     ++     + NRRI+I++  +
Sbjct: 234 TKRATAVVKILLNNESVLPQNLTAAGRSEYVPIAPNNNATGRAVNRRIEIILSPQ 288


>gi|134292850|ref|YP_001116586.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134136007|gb|ABO57121.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 226

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A  R      L +++ + L+ L A      +       GI I I       +F+   +  
Sbjct: 71  AAARGTAAVTLPERVPAWLASLDALKTAGRIALVRAPHGIEIGI---DAKVLFNVGDARL 127

Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
           LP+   VL +I   L+ H++  I + GHTD  P  N     NW LS  RA S  + L + 
Sbjct: 128 LPDAAPVLTQIARALSEHASGDILVEGHTDNVPIANAKYESNWELSSARAGSVVRYLAER 187

Query: 303 GVSEDRISKISGFAHHRLKIASD 325
           GV+  R++ I G A  +  +  D
Sbjct: 188 GVAPHRLAAI-GRADTQPLVTGD 209



 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55
           +      G W I YAD +T LM  FL ++++ 
Sbjct: 20 DEGDDAQTGRWLISYADLITTLMVLFLALYVLQ 52


>gi|328958204|ref|YP_004375590.1| flagellar motor protein MotB [Carnobacterium sp. 17-4]
 gi|328674528|gb|AEB30574.1| flagellar motor protein MotB [Carnobacterium sp. 17-4]
          Length = 249

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---I 266
            +   V       G+++S  D      FD  ++    +       IG++L         I
Sbjct: 105 ELNDSVTTSIEERGLVLSFND---ALFFDSGNAEIKADQQNKFVDIGKLLNQPALKDSFI 161

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--I 322
            + G+TD+ P  N     NW LS+ RA +  Q+++  SG++ +R+  + G+  +R K   
Sbjct: 162 RVEGYTDSVPVSNPKYKSNWDLSVLRASNVAQIIINDSGINPNRV-SVVGYGEYRPKSDN 220

Query: 323 ASDPMNSANRRIDILVEDRQ 342
            ++     NRR+DIL+ + +
Sbjct: 221 KTNEGRVENRRVDILILNSE 240



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----PFG 73
           ++    ++ P N   W + YADF+T+LM FF++M+ ++  D      +   F+      G
Sbjct: 3   RRNKKHEEEPENHERWLLSYADFITLLMIFFIIMYSMSEMDKSKYNELASVFSMEMGGGG 62

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
             ++       D +N    +   + +   +   T ++        +           +  
Sbjct: 63  TGILEGESKSGDGENSKGSTELTEEEQQEEVKETIDAYIDTSELNDSVTTSIEERGLVLS 122

Query: 134 LSNSQQSEHCKNSLTRDSEK 153
            +++   +     +  D + 
Sbjct: 123 FNDALFFDSGNAEIKADQQN 142


>gi|261380420|ref|ZP_05984993.1| OmpA family protein [Neisseria subflava NJ9703]
 gi|284796655|gb|EFC52002.1| OmpA family protein [Neisseria subflava NJ9703]
          Length = 411

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           ++ S+  + N     ++  K+ ++  K++      ++   L   +A  +   V  E  + 
Sbjct: 217 MQWSLGDKFNTASTKVNSLKLPSVITKQQDTQKTVRLRPLLENEIARKL---VSVEDFQD 273

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
              ++I+      +F+  S+    +   VL  + + L      I + G+TD  P +++  
Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLAAVSQALDSVEGQIIVTGYTDNQPIQSLNF 330

Query: 282 RDNWRLSLDRAYSAYQVL---MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             NW LS  RA +  ++L   +K+G    RI +  G         +D     + NRR++I
Sbjct: 331 PSNWHLSQARADAVKEILLNYVKNG--GTRI-RSEGRGSTDPVAPNDTLENRAKNRRVEI 387

Query: 337 LV 338
            +
Sbjct: 388 TL 389


>gi|163758837|ref|ZP_02165924.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43]
 gi|162284127|gb|EDQ34411.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43]
          Length = 343

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 110/344 (31%), Gaps = 26/344 (7%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    +   +    +    +  +  +M    V  +            +Q  N     +  
Sbjct: 5   RNRRRERGVDYWPGFVDALSTLLLAIMFLLTVFVLAQFFLSREISGRDQVLNRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E++      Q+  D   +   + +  +       Q                  
Sbjct: 65  LTQLLALERS----GKQDLEDTLANLQASLSESETDRSRLQQLLDSGSGATAAAEAQIGA 120

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            SE               +        ++  +       L   +    + + ++ DL ++
Sbjct: 121 LSETLDAEKKVSQRALNQVELLNQQISALRSQLAALEDALEVSETKDQETQAKIADLGRR 180

Query: 199 ISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++  L+  V +           ++ +L       ++      ++  +F    +   P   
Sbjct: 181 LNVALAQRVQELNRYRSDFFGRLREILSSREDVRVVGDRFVFQSEVLFPSGGNELNPAGQ 240

Query: 250 VVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
             + K+ E +   +  I         + GHTD  P     R  DNW LS  RA S  + L
Sbjct: 241 EQMAKLAEAINELSREIPEEINWVLRVDGHTDNVPLSGTGRYADNWELSTARATSVVKYL 300

Query: 300 MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           +++GV  +R+   +GF   +      SD   + NRRI++ + +R
Sbjct: 301 IENGVPANRLVA-AGFGEFQPIADGDSDEARATNRRIELKLTER 343


>gi|116327359|ref|YP_797079.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120103|gb|ABJ78146.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 224

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +E       + +EK+   +    L+ + ++    +       ++           + I I
Sbjct: 31  EESKLENQRILEEKVNLSRSLNELKRIQEESELRIQEY--RRLIATFRSLIDAGKLKIKI 88

Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           ID R      +  +F   S+      I  ++++  +LA        I GHTD +P     
Sbjct: 89  IDGRMVVVLSSDILFPVGSAFLSSAGIASIREVTTLLASLGGKRFQIEGHTDDTPTGIKG 148

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVED 340
             NW L+  RA +    ++K+G+ E+RIS  S  A       + P   SANRRI+I++  
Sbjct: 149 YTNWELASSRALNVLHTMIKAGMPEERISAASMGASRPALPNTSPENRSANRRIEIVIVP 208


>gi|38327415|gb|AAR17735.1| motility protein B [Bdellovibrio bacteriovorus]
          Length = 248

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + + +  ++        ++ V  +    G+ I++     +  F + S+   PE +  L K
Sbjct: 99  VERSLDKSMDSAQKKLAIQDVYHDAV--GVRIAL---AASTFFQEGSAKLKPEALKXLDK 153

Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312
           + +VL    + I I GHTD  P    +   NW L+  RA +  + L+K   +   R   +
Sbjct: 154 V-DVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASAVVRYLVKVHQMDPKRFVSL 212

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340
           S +   +  + +  D   + NRRI+I +  
Sbjct: 213 S-YGDQKPVVPNDSDEHRAMNRRIEIFIVT 241



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    +   N   W + YADF+T+L AFF+VM+  + ++++ +K  E        +L
Sbjct: 1   MAKKHRKHEEHENHERWLVSYADFITLLFAFFVVMYATSTSNEEKQKEFEDS---VKLSL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
               +G  D  +    S   ++++ +     K           + 
Sbjct: 58  HLVGRGGSDADSNSIGSIIGELEMPVGNFPKKGGPGEVEDYVERS 102


>gi|29348538|ref|NP_812041.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569097|ref|ZP_04846507.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29340443|gb|AAO78235.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841116|gb|EES69197.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 280

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +  Q S   K  L   ++ G  + +   +  +   E+      LS++K    +R++ + 
Sbjct: 47  NTGDQLSAQIKKLLRDTTQMGNSIRQYQSMLSTNMTEQEKLNALLSQKKNELSERERTIN 106

Query: 194 DLAKKIS------STLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +L   I+        L   V D ++      +        + +++ D     +F   S+ 
Sbjct: 107 ELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVREKDGKVYVAMSD---KLLFQSGSAR 163

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
                   L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K
Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223

Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           + GV+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 224 NYGVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265


>gi|222056198|ref|YP_002538560.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221565487|gb|ACM21459.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 349

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 11/209 (5%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            Q E  K      +       + ++L  ++   ++  +    +  ++ + +K+   +  +
Sbjct: 129 AQEEAAKKVPELQAAVADREERISNLNATLRSLKSNLIQ--IRTDVVQLAKKRSGSEEKE 186

Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
              +      +D I KG +L       +   I+      +F   S+         L+++ 
Sbjct: 187 NAYAAFRRDFSDQIGKGEILVTEYPDKL---IVTMPEQVLFRSGSATINKGGKKALERVA 243

Query: 257 EVLAHS-TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            +L       I I GHTD++P ++  R   NW LS  RA S  + L K G        ++
Sbjct: 244 SILKKVKNNRIRIEGHTDSTPIKSKHRYASNWDLSAARAASVVRHLQKKGAVNPEFLTLA 303

Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVED 340
           G+  +    A++       NRRI+I +  
Sbjct: 304 GYGPYAPAAANNTSRGRSLNRRIEIALIP 332


>gi|269792934|ref|YP_003317838.1| OmpA/MotB domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100569|gb|ACZ19556.1| OmpA/MotB domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 241

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             A    KR Q+  + I+  L  L  +  +   +     + G+ +S+ +Q    +F   S
Sbjct: 79  QDAGDSIKRTQEFKEGIARQLQALAKEEGLQSQMKVHVDQRGVTVSMSEQ---FLFAPGS 135

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300
           +   P    VL K+G+VL      +S  GHTD +P       DNW LS  RA +    ++
Sbjct: 136 AELSPFARRVLFKVGQVLRVVRFPLSFEGHTDNTPMEGGLYGDNWGLSAARAAAVASYMV 195

Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              G+S+  +  + G+   +  + +D     + NRR+DI++  
Sbjct: 196 NRIGLSDKNVQAV-GYGPSKPLVPNDTPEHRAINRRVDIVILT 237



 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 39/111 (35%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K    + P     +   Y D +T+L+ FF+ ++  ++ D    + +   F      L
Sbjct: 1   MARKKKQPEGPTGAPLFMATYGDMVTLLLTFFVFLYSFSSIDVQKFQKMIFSFQGALGVL 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                   D      +  Q+  D        K  +  ++ +  +++  Q  
Sbjct: 61  PGGKTIQEDAGVYQGKVGQDAGDSIKRTQEFKEGIARQLQALAKEEGLQSQ 111


>gi|94270700|ref|ZP_01291804.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93450704|gb|EAT01786.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 227

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++ K I      L    +   V  E     IL+ I D      FD   +    +   +L 
Sbjct: 59  EVRKPIQQVFEDLQEAGL---VTVEDQEEEILVRIQD---AVAFDTGRAEIKGDFRELLD 112

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           ++GE++  S   + + GHTD  P R  A    NW LS  RA +  + L+ +  +  DR++
Sbjct: 113 QLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRDRLA 172

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            ++  A  +    +D     +ANRR++  +   +
Sbjct: 173 AVA-HADGKPVATNDTAEGRAANRRVEFRIRPGE 205


>gi|226944750|ref|YP_002799823.1| hypothetical protein Avin_26720 [Azotobacter vinelandii DJ]
 gi|226719677|gb|ACO78848.1| OmpA/MotB domain protein [Azotobacter vinelandii DJ]
          Length = 430

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   + D +V+  + +     +++     R   +FD  ++  +     +L +IG+
Sbjct: 284 RLAKLLEAEIRDGLVR--VSDEVDRSLVV----LRGDGLFDSGAAQVIERFQPLLARIGD 337

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L  +   + + G+TD  P R +    NW LS  RA +    L        R+ +  G  
Sbjct: 338 ALNTTRGSVLVMGYTDNVPIRGLRYASNWELSQARADTVKAQLQARLSDPGRV-RAEGRG 396

Query: 317 HHRLKIASD--PMNSANRRIDILVEDRQG 343
                  +D     + NRR++I +    G
Sbjct: 397 AADPVAPNDSPANRARNRRVEITLLVPPG 425


>gi|313639080|gb|EFS04061.1| chemotaxis protein MotB [Listeria seeligeri FSL S4-171]
          Length = 275

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 92/237 (38%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173
             +     ++ E          +     N       +G D      + K++++++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGEGPDDPNVNAVLKAMDEQDKKKQA 95

Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S +    A+ +   ++ + +  G+LI+I D
Sbjct: 96  NEEEKAKKAAAALLKKQNEEKIEAFKKQIDSYIQ---AEKLGTKMMTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARD-NWRL 287
                +F   S+        + ++IG++ A     +   + GHTD  P        NW L
Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGDLFAQGKGTMEGIVSGHTDNVPISTSTYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   +    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFKPVAKNDIATNREKNRRVEIMVRP 265


>gi|298386938|ref|ZP_06996492.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14]
 gi|298260088|gb|EFI02958.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14]
          Length = 280

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +  Q S   K  L   ++ G  + +   +  +   E+      LS++K    +R++ + 
Sbjct: 47  NTGDQLSAQIKKLLRDTTQMGNSIRQYQSMLSTNMTEQEKLNALLSQKKNELSERERTIN 106

Query: 194 DLAKKIS------STLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +L   I+        L   V D ++      +        + +++ D     +F   S+ 
Sbjct: 107 ELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVREKDGKVYVAMSD---KLLFQSGSAR 163

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
                   L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K
Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223

Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           + GV+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 224 NYGVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265


>gi|241206240|ref|YP_002977336.1| hypothetical protein Rleg_3551 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860130|gb|ACS57797.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 343

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    + T +    +    +  +  +M    V  +            ++  N     +  
Sbjct: 5   RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLNRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+   +    +  +L       +          +     Q            +
Sbjct: 65  LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLSAGSGGQDAAQKRIGSMTQE 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    S+      +   L   I   E        K+++   K       L   
Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEDKDRVSQTKIADLGSRLNVA 184

Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++     L+   +D   +     + R  I I       ++  +F    +   PE    + 
Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMA 244

Query: 254 KIGEVLAHSTEVI--------SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           K+   L    + I         + GHTD  P       RDNW LS  RA S  + L+  G
Sbjct: 245 KLASALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V  DR+   +GF   +     D  ++   NRRI++ + ++
Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARSTNRRIELKLTEK 343


>gi|255036139|ref|YP_003086760.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254948895|gb|ACT93595.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 295

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           + K  +    N        Q E  K +     ++  DL   +       K+    +    
Sbjct: 59  KAKNDELTSKNAKMKELEDQVEFLKKNNNNLLDRMSDLSVISKEGSESIKKSLAMMDQQG 118

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            +     K  +    L   +   L   +AD   + V  E  +  + +S+ D+    +F  
Sbjct: 119 AQIRDLNKSIQHKDSLNMALVLNLKRSLADVSDEDVQIEVKKGVVYVSLSDKM---LFRS 175

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297
            SS+       VL K+ ++L    E  I I GHTD  P       DNW LS+ RA +  +
Sbjct: 176 GSSVINSAADNVLSKVAKILNDYKEIEILIEGHTDNVPIATDKVADNWDLSVLRATAVAR 235

Query: 298 VLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            L K  GV   R+    G   +  K+A+D  P  S NRR +I++  +
Sbjct: 236 TLQKKYGVEPVRMIA-GGRGEYLPKVANDSAPNRSLNRRTEIIITPK 281


>gi|227823348|ref|YP_002827320.1| hypothetical protein NGR_c28210 [Sinorhizobium fredii NGR234]
 gi|227342349|gb|ACP26567.1| flagellar motor protein [Sinorhizobium fredii NGR234]
          Length = 343

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 109/326 (33%), Gaps = 29/326 (8%)

Query: 40  FMTVLMAFFLVMWIINAT----------DDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
             T+LMA   ++ +               D+    +    N   + L     G  D ++ 
Sbjct: 23  LSTLLMAIMFLLSVFVTAQFLMGREITGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 82

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
                 +      +    ++ +D   GS +   Q      +         S         
Sbjct: 83  LANLQASLSQSEGERSRLQSLLDQGAGSADAASQKIGRLGSELENERQISSRAMSQIELL 142

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           + +      +   +E ++   E       +K   L  +    L    ++++       +D
Sbjct: 143 NQQIAALRSQIAAIEGALQASEAKDQSSQAKIADLGRRLNVALAQRVQELNR----YRSD 198

Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
              +     + R  I I       ++  +F   S+   PE    + K+   L        
Sbjct: 199 FFGRLREILSDRENIRIVGDRFVFQSEVLFSSGSNDLNPEGQGEMAKLATALLDLAKEIP 258

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           A    V+ + GHTD  P     R  DNW LS  RA S  + L+  GV  DR+   +GF  
Sbjct: 259 AEINWVLRVDGHTDNVPLSGTGRFADNWELSSARATSVVKFLISRGVPADRLVA-AGFGE 317

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
           ++     + + +   NRRI++ + ++
Sbjct: 318 YQPIAVGESLEARAQNRRIELKLTEK 343


>gi|289433964|ref|YP_003463836.1| chemotaxis protein MotB [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|315301919|ref|ZP_07872930.1| chemotaxis protein MotB [Listeria ivanovii FSL F6-596]
 gi|289170208|emb|CBH26748.1| chemotaxis protein MotB [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313629715|gb|EFR97837.1| chemotaxis protein MotB [Listeria ivanovii FSL F6-596]
 gi|313634398|gb|EFS00987.1| chemotaxis protein MotB [Listeria seeligeri FSL N1-067]
          Length = 275

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 91/237 (38%), Gaps = 20/237 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173
             +     ++ E          +     N       +G D      + K++++++     
Sbjct: 36  FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGEGPDDPNVNAVLKAMDEQDKKKQA 95

Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   +   +L  + +++++   K+I S +    A+ +   +  + +  G+LI+I D
Sbjct: 96  NEEEKAKKAAAALLKKQNEEKIEAFKKQIDSYIQ---AEKLGTKMTTKYSDEGLLITIRD 152

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARD-NWRL 287
                +F   S+        + ++IG++ A     +   + GHTD  P        NW L
Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGDLFAQGKGTMEGIVSGHTDNVPISTSTYSSNWEL 209

Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           S+ RA +  + +++    V+    S   G+   +    +D       NRR++I+V  
Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFKPVAKNDVATNREKNRRVEIMVRP 265


>gi|162456876|ref|YP_001619243.1| hypothetical protein sce8593 [Sorangium cellulosum 'So ce 56']
 gi|161167458|emb|CAN98763.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 210

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ E+      + RL+ L     S L+G +A+          T   I I     R + +
Sbjct: 48  DLAAERATRATERARLEAL----ESALAGPLAEG-----RITLTEGRIGI-----RGSIL 93

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F+ +S+   P  I +L+ + + L     H  E+I + G TD  P  + +R   DNW LS 
Sbjct: 94  FELNSAELQPAGIALLRALADPLKAYLEHHDELIMVSGFTDDRPLTSSSRGYADNWELSA 153

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            RA +  + L  +GV +  +   +GF        +D     + NRR++I    R+G
Sbjct: 154 QRALTVTRALAAAGVPDTSLFA-AGFGERHPVAPNDTSENRAKNRRVEISPIPRRG 208


>gi|328958273|ref|YP_004375659.1| uncharacterized protein YtxE [Carnobacterium sp. 17-4]
 gi|328674597|gb|AEB30643.1| uncharacterized protein YtxE [Carnobacterium sp. 17-4]
          Length = 205

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLS 204
           SL +  E    +  + +   SI +E          E I A   +  L  +L K  +  ++
Sbjct: 5   SLEKFQEASNSIQSAFNGGDSIIEESIKDTETEPSEDITAAPSEDSLDPELIKMYNEVVA 64

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            L A+ +      E  + GI ++I   + + +F   S+I        L  + +++     
Sbjct: 65  FLEANEMTAQASVEYDQDGIYVNI---QESILFGSGSAIIAESGESTLNGLSDLIQQFEN 121

Query: 265 VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322
            + + G+TD  P  N     NW LS  RA S  + L  +  V   R+S   G+  +    
Sbjct: 122 DVVVEGYTDDVPMNNSIFSSNWELSTGRALSVLRYLSEERSVDPTRLSA-KGYGEYHPIS 180

Query: 323 ASDPMN--SANRRIDILVE-DRQG 343
            +D       NRR++I++  DRQG
Sbjct: 181 PNDSEENKEKNRRVNIVLVYDRQG 204


>gi|154687112|ref|YP_001422273.1| flagellar motor protein MotS [Bacillus amyloliquefaciens FZB42]
 gi|154352963|gb|ABS75042.1| YtxE [Bacillus amyloliquefaciens FZB42]
          Length = 229

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                    K    L + + + +    A ++   +  +    G+++ +   +   +F   
Sbjct: 69  ASSDKANENKEQDLLLQNVKTYIK---AHHLSSKLTAKRDERGVVLVL---QEAVLFQTG 122

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
            +  L     VL +I  +L      I + GHTD+          NW LS  RA S  +  
Sbjct: 123 KADVLKNAEPVLHQIAVLLKTIPNDIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYF 182

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
             +     +    +G+A  +      S      NRR++I+++
Sbjct: 183 TANEDFSAKRFISAGYADTKPVKDNKSPGHMKENRRVEIVIK 224



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
          ++  ++ +      W + +AD +T+++ FF++++ ++  D +  ++     +  G     
Sbjct: 10 RRNKLEHSG-GSPRWMVTFADLITLILVFFILLFSMSQIDAEKFQSAVSSIHTNGSGGEP 68

Query: 79 ASK 81
          AS 
Sbjct: 69 ASS 71


>gi|162146328|ref|YP_001600787.1| hypothetical protein GDI_0503 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161784903|emb|CAP54446.1| putative outer membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 326

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 19/335 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++         L +W        T+LM    V+ +           +          L
Sbjct: 1   MARRRRQTHA--GLDAWPGYVDALSTLLMVIIFVLLVF-VLGQAFLSVVLNKRQQAMDQL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 + D  +  ER   + + LS+      +  D  + ++   +  Q           
Sbjct: 58  AHQVAQLNDMLSL-ERGQNHSLQLSVASLRAAHEKDAAMETSLTAQVAQTTPERDNQAHL 116

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +Q S+     L    E+ +   + +     ++  +N       K   L +K    L D  
Sbjct: 117 AQASQQQVTDLGSQLEQLRQ--QLSAAMAVLDISQNEIRDRDRKIDDLGLKLNVALADKV 174

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++    S       ++ +L       ++      ++  +F    +   P+ I  ++ + 
Sbjct: 175 EQLQRYRSEFFGR--LRDILQNQDGVQVVGDRFVFQSEVLFPPGGAELSPKGIADIRALA 232

Query: 257 EVL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
                      A    ++ + GH D  P  +    NW LS  RA +  ++L+  G+S   
Sbjct: 233 RTFHQVSAQIPASIPWILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHH 292

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           ++  +GFA  +     +     + NRRI+  + DR
Sbjct: 293 LAA-TGFADFQPLDTHETPAAFARNRRIEFRLTDR 326


>gi|149375283|ref|ZP_01893054.1| OmpA/MotB domain protein [Marinobacter algicola DG893]
 gi|149360319|gb|EDM48772.1| OmpA/MotB domain protein [Marinobacter algicola DG893]
          Length = 355

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 21/241 (8%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
             + Q L       + +      ++     + +   + + ++   ++  + +     L  
Sbjct: 116 NAEAQALRVEDLGKAIASAESELEDEEQLTASQRAIILQLSNQISALQDQLSRITAALRL 175

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-----ETTRTGILISIIDQR--- 232
           ++ L  +++  L+++ K++++ L+  V +       F     +  +    I I+  R   
Sbjct: 176 QEDLTAEKEAELEEVGKRLNTLLAERVNELERYQSEFFGRLRDILQDNENIRIVGDRFLL 235

Query: 233 -NTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN-IAR 282
            +  +F   S+   PE    L K+ EVL             ++ I GHTD  P       
Sbjct: 236 PSELLFASGSARLGPEGQRELDKLAEVLLDVVAAIPEDIDWILRIDGHTDRIPINTEAFP 295

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
            NW LS  RA +  + L   GV ++R+   +GF       +  S      NRRI+I + D
Sbjct: 296 SNWELSTARAVAVVRYLASEGVPQNRMVA-AGFGEFFPVASGGSAEALRQNRRIEIKLTD 354

Query: 341 R 341
           R
Sbjct: 355 R 355


>gi|86141364|ref|ZP_01059910.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
 gi|85831923|gb|EAQ50378.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
          Length = 276

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 90/216 (41%), Gaps = 16/216 (7%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            QSE  K  +T       +L  +     +++ +    L    ++      + K  +D   
Sbjct: 50  AQSETMKEQITDLRNANNNLINTQGNLTTLSAKGAENLEKSLEQMKEKDLQIKAFRDAMN 109

Query: 198 K-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +       + ++L G + +   + +     +  + +SI D     +F+            
Sbjct: 110 RKDSVTLALVTSLKGAIGNLNDEDIEINVEKGVVYVSISD---KLLFNSGRWDVTNRAKE 166

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
           VL K+  V+ +  +    + GHTD+ P   ++  DNW LS+ RA S  ++L +  GV  +
Sbjct: 167 VLGKVATVVKNKPDIEFMVEGHTDSQPISTSVIEDNWDLSVKRATSVVRILQEEFGVPPE 226

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           R+   +G +++    ++D     + NRR  I+V  +
Sbjct: 227 RMVA-AGRSYYVPLASNDTAEGRARNRRTRIVVLPK 261


>gi|148258147|ref|YP_001242732.1| hypothetical protein BBta_6939 [Bradyrhizobium sp. BTAi1]
 gi|146410320|gb|ABQ38826.1| Putative flagellar motor protein MotB [Bradyrhizobium sp. BTAi1]
          Length = 342

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS-QQSEHCKNSLTRDSEKGKDLCKSTDL 163
            +      L+ G  N + +  R++     L+++   +    N L R  +  K +      
Sbjct: 78  SLDDQVAQLRAGLANAEAERDRVKGLYDGLASAGSNAAGRTNELNRALDSEKQVTARAMA 137

Query: 164 E--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209
           +         ++ ++       L   +    + + R+ DL  +++  L+  V +      
Sbjct: 138 QIEVLNQQISALRRQLAALEDALDASEKRDKESQNRIADLGSRLNVALAQRVQELTRYRS 197

Query: 210 ---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------- 259
                ++ +L       ++      ++   FD   +  LPE    L  +   L       
Sbjct: 198 EFFGRLRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALVDLDKQI 257

Query: 260 -AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
            A  + V+ + GHTD  P  + + + NW LS  RA S  Q L+  GV   R+   +GFA 
Sbjct: 258 PAEISWVLRVDGHTDVRPINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVA-AGFAE 316

Query: 318 HRLKIASDPMNS--ANRRIDILVEDR 341
            +     +  ++   NRRI++ + +R
Sbjct: 317 FQPLDPGNTEDAFRRNRRIELKLTER 342


>gi|296124309|ref|YP_003632087.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016649|gb|ADG69888.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
          Length = 275

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 29/229 (12%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
            ++ Q   N    ++   Q E    +L    E       +     S  +++   +   S 
Sbjct: 50  MERNQFQGNLSQLMAEKVQLEQQNATLRNGLELANQRVDNMLAANSSLEDKVKNMLTSSS 109

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           +  L+    +R+++L +K                      +  +           +F   
Sbjct: 110 KNPLSTDANQRMEELRRK-------YPDFEFDPQTGVSKFQENL-----------LFASG 151

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-----RDNWRLSLDRA 292
           S    PE   +LQ+   ++  +      + + GHTD  P    A       NW LS DRA
Sbjct: 152 SDEIRPEAYALLQEFARIMNSADSKHLKVLVVGHTDDKPISRKAVADKHPTNWHLSTDRA 211

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            S    L KSG++E R+   +G++  +    +  D     NRR++I V 
Sbjct: 212 NSVVLALKKSGLAEQRMGA-AGYSLFQPLAPNSDDKNRQKNRRVEIFVL 259


>gi|330953776|gb|EGH54036.1| flagellar motor protein MotD [Pseudomonas syringae Cit 7]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTSTVGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|257457608|ref|ZP_05622775.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580]
 gi|257444994|gb|EEV20070.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580]
          Length = 238

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             + AM++ K L    KK  S  +  +  N    +   +   GI+IS+        F ++
Sbjct: 75  SSMPAMEKGKMLGTALKKAVSIFAPEIKTN---KIAVTSDERGIVISLAAD---SFFARN 128

Query: 241 SSIPL-PETIVVLQKIGEVLAH---STEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSA 295
           S+     E+   L +I + L+    +     I GHTD+S         NW LS  RA + 
Sbjct: 129 SAELNIEESRETLLRIAQFLSDKELAARRFRIEGHTDSSDALSGKWTSNWELSAARAINV 188

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              L   G  ED+   I+G+A  R   +++     + NRR+DI++ D
Sbjct: 189 LHNLTDFGAQEDKF-SIAGYADTRPVYSNETAEGRAYNRRVDIIILD 234



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 5/143 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74
           + +K    + P     W   Y D +T+++ FF++++  +  D    +A+      +P G 
Sbjct: 1   MARKKKGANAP--GSGWLTTYGDMVTLMLCFFVMLYEPSEVDITRLQALSASISGDPTGG 58

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           ++  ++  + D  N        +    +   + K            K      E  I  +
Sbjct: 59  SISLSAGKLADLGNTISSMPAMEKGKMLGTALKKAVSIFAPEIKTNKIAVTSDERGIV-I 117

Query: 135 SNSQQSEHCKNSLTRDSEKGKDL 157
           S +  S   +NS   + E+ ++ 
Sbjct: 118 SLAADSFFARNSAELNIEESRET 140


>gi|218461676|ref|ZP_03501767.1| flagellar motor protein MotB [Rhizobium etli Kim 5]
          Length = 75

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 57/73 (78%)

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +IRGHTD   ++    +NWRLS+DRA SAY +L++ G+ E RIS++SGFA  RLK+ ++P
Sbjct: 1   AIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPAEP 60

Query: 327 MNSANRRIDILVE 339
            N+ANRRI+ILV+
Sbjct: 61  FNAANRRIEILVQ 73


>gi|144898366|emb|CAM75230.1| flagellar motor protein MotB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 319

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 48/323 (14%)

Query: 37  YADFM-TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQ 95
           + D M T+LM    V+ +           + Q+F      +  A  G     +  +    
Sbjct: 17  FVDAMATLLMVLIFVLLVF---------VLAQFF------MGNALTGRDQALSRLQAEMA 61

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
           + ++    E      V   +    +K Q    E +    S  ++    + + ++     +
Sbjct: 62  SMVEQLSLERAKSADVKADLTRLQEKLQASLAERDNLLSSLDEERHLSETARSQADLLNQ 121

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209
            +        ++ ++       L   + L++++K ++ DL K+++  L+G V +      
Sbjct: 122 QMT-------AMREQLEKLAAALDATEKLSVEQKAQIADLGKRLNVALAGKVEELQRYRS 174

Query: 210 ---NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL----- 259
                ++ VL E  R GI I       ++  +FD +S+         ++++ + L     
Sbjct: 175 EFFGKLRKVLGE--RQGIRIEGDRFVFQSELLFDSASADLGVSGEQQVRQLAKTLIDLSK 232

Query: 260 ---AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
                   V+ + GHTD  P ++     NW LS  RA S  + L+ +GV  DR++  +GF
Sbjct: 233 QIPKEVNWVLRVDGHTDKRPIKSGRFPSNWELSTARAISVIRTLIDAGVPADRLAA-AGF 291

Query: 316 AHHRLKIASDPMN--SANRRIDI 336
                   SD     + NRRI+I
Sbjct: 292 GEFLPLDNSDSEAALAKNRRIEI 314


>gi|209543669|ref|YP_002275898.1| hypothetical protein Gdia_1504 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531346|gb|ACI51283.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 326

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 19/335 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++         L +W        T+LM    V+ +           +          L
Sbjct: 1   MARRRRQTHA--GLDAWPGYVDALSTLLMVIIFVLLVF-VLGQAFLSVVLNKRQQAMDQL 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 + D  +  ER   + + LS+      +  D  + ++   +  Q           
Sbjct: 58  AHQVAQLNDMLSL-ERGQNHSLQLSVASLRAAHEKDAAMETSLTAQVAQTTAERDNQAHL 116

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +Q S+     L    E+ +   + +     ++  +N       K   L +K    L D  
Sbjct: 117 AQASQQQVTDLGSQLEQLRQ--QLSAAMAVLDISQNEIRDRDRKIDDLGLKLNVALADKV 174

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++    S       ++ +L       ++      ++  +F    +   P+ I  ++ + 
Sbjct: 175 EQLQRYRSEFFGR--LRDILQNQDGVQVVGDRFVFQSEVLFPPGGAELSPKGIADIRALA 232

Query: 257 EVL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
                      A    ++ + GH D  P  +    NW LS  RA +  ++L+  G+S   
Sbjct: 233 RTFHQVSAQIPASIPWILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHH 292

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           ++  +GFA  +     +     + NRRI+  + DR
Sbjct: 293 LAA-TGFADFQPLDTHETPAAFARNRRIEFRLTDR 326


>gi|161520469|ref|YP_001583896.1| hypothetical protein Bmul_3921 [Burkholderia multivorans ATCC
           17616]
 gi|160344519|gb|ABX17604.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           multivorans ATCC 17616]
          Length = 431

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +K++ D+A+            L  L+ D I  G +  +       S++  R   MF
Sbjct: 269 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 326

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 327 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 386

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           Q+L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 387 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 427


>gi|172064681|ref|YP_001812331.1| DotU family type IV/VI secretion system protein [Burkholderia
           ambifaria MC40-6]
 gi|171998166|gb|ACB69082.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MC40-6]
          Length = 436

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K RL    +++   LS L+ + + +G+L  T       S++  +   MF    S  LP  
Sbjct: 285 KDRLVSAPQRLR--LSYLLRNEVARGLL--TVDEDDRRSVVVFKGDSMFASGQSTVLPVV 340

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
              L K+G  +A     + +RGHTD  P R+     N  LS  RA    Q+L + G   D
Sbjct: 341 EPALGKVGGEVARVGGSVLVRGHTDNQPIRSAVFPSNLVLSEKRAAYVAQILQQRGTPAD 400

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           RI  I G    +     A+    + NRR++I+V  ++
Sbjct: 401 RIHAI-GKGDTQPVGDNATAAGRALNRRVEIVVTQQR 436


>gi|331016979|gb|EGH97035.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFFSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   G++  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|313610144|gb|EFR85455.1| chemotaxis protein MotB [Listeria monocytogenes FSL F2-208]
          Length = 170

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 14/167 (8%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +L  + +++++   K+I S ++   A+N+   +  + +  G+LI+I D     +F   
Sbjct: 1   AALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRDD---ILFQSG 54

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297
           S+        + ++IGE+       +   + GHTD  P   +I   NW LS+ RA +  +
Sbjct: 55  SAELTAGKREIAKEIGELFXQGKGTMEGIVSGHTDNVPISTSIYSSNWELSVARAVNFME 114

Query: 298 VLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +++    V+    S   G+   R    +D       NRR++I+V  
Sbjct: 115 AIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 160


>gi|326336238|ref|ZP_08202410.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691747|gb|EGD33714.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 278

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +  +L G++ +   + +  +  +  + +SI D+    +F   S    P    VL K+ +V
Sbjct: 117 LVQSLKGVLGNLDDQDITIQVDKGVVYVSISDKM---LFSSGSYNVTPRAREVLGKVAKV 173

Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           + +  +    + GHTD  P +N   +DNW LS+ RA +  ++L    GV+  R++  +G 
Sbjct: 174 VNNKPDFEFMVEGHTDNVPIKNNCIKDNWDLSVLRATAVVRILQNDFGVTPARMTA-AGR 232

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341
           + +      AS    + NRR  I+V  +
Sbjct: 233 SEYVPVTTNASADGRALNRRTRIVVLPK 260


>gi|189353340|ref|YP_001948967.1| hypothetical protein BMULJ_04580 [Burkholderia multivorans ATCC
           17616]
 gi|189337362|dbj|BAG46431.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
          Length = 432

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +K++ D+A+            L  L+ D I  G +  +       S++  R   MF
Sbjct: 270 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 327

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 328 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 387

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           Q+L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 388 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 428


>gi|305667009|ref|YP_003863296.1| putative flagellar motor protein MotB [Maribacter sp. HTCC2170]
 gi|88709244|gb|EAR01478.1| putative flagellar motor protein MotB [Maribacter sp. HTCC2170]
          Length = 283

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 19/227 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           T   +     + N F  +N+Q+  +   +LT  + KG +     +LEKS+   +   L  
Sbjct: 54  TATSRLQTLEDQNAFLKANNQELINNMGNLTTLTTKGAE-----NLEKSLESLQEKDLTI 108

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              +  +  +    L  L + +   L  L  ++    +     +  + +SI D     +F
Sbjct: 109 RKLQNAITRRDSVNL-SLVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 160

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
              S         +L K+ +V+ +  +    + GHTD  P+R  +  DNW LS  RA + 
Sbjct: 161 SSGSYNITSRAKEILGKVAKVVNNKPDFEFMVEGHTDDVPYRKGVLLDNWDLSAKRATAV 220

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            ++L    GV   R++  +G A       S    S NRR  I+V  +
Sbjct: 221 VRILQNDYGVDPKRMTA-AGRAEFVPV--SQTQKSKNRRTRIVVLPK 264


>gi|150397861|ref|YP_001328328.1| hypothetical protein Smed_2663 [Sinorhizobium medicae WSM419]
 gi|150029376|gb|ABR61493.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 342

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 21/322 (6%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96
             T+LMA   ++ +         + I       N     +   ++ +  E++  +    +
Sbjct: 22  LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 81

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             +L      ++          ++      + +       S+     + S    S+    
Sbjct: 82  LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 141

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMK---RKKRLQDLAKKISSTLSGLVADNIVK 213
             +   L   I   E       +K++    K     +RL     +    L+   +D   +
Sbjct: 142 NQQIAALRSQIAAIEGALQASEAKDEASQAKISDLGRRLNVALAQRVQELNRYRSDFFGR 201

Query: 214 GVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHST 263
                + R  I I       ++  +F    +   PE    + K+   +        A   
Sbjct: 202 LREILSDRENIRIVGDRFVFQSEVLFPSGGNELNPEGQAEMTKLAAAILDLAREIPAEIN 261

Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +GF  ++  
Sbjct: 262 WVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGEYQPI 320

Query: 322 IASDPMNSA--NRRIDILVEDR 341
             SD   +   NRRI++ + ++
Sbjct: 321 APSDTQEARAQNRRIELKLTEK 342


>gi|331011090|gb|EGH91146.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 295

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    +IP  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (32%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +    +   N   W + YADF+T+L AFF+VM+ I++ ++   K + Q       +    
Sbjct: 3   RRRPAEEHENHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTERT 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            K I      P      +  +   E                  Q  R        S+  
Sbjct: 63  MKPIPIGDQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQM 121


>gi|320354327|ref|YP_004195666.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122829|gb|ADW18375.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 248

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+I + L        V+ V  +     + I       + +FD+  +   P +  +L+K+ 
Sbjct: 92  KRIKNDLELAKLQAQVEAVQQDNDSIILRI-----HESVLFDEGQATLNPASYPILRKVA 146

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGF 315
           +++      + I GHTD++P       NW LS+ RA +      +  +   DR+S  +G+
Sbjct: 147 DIIRPLPMSMRIEGHTDSTPMAGATTSNWDLSVARAVAVMSFYHRGELFALDRMSA-AGY 205

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDRQ 342
              R    +   +  + NRR+D ++   +
Sbjct: 206 GDTRPLAPNTTKDNMAKNRRVDFVLRSNR 234


>gi|289627957|ref|ZP_06460911.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647094|ref|ZP_06478437.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298487807|ref|ZP_07005848.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157899|gb|EFH98978.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866472|gb|EGH01181.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 295

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           SI   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    +IP  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++ A +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|110639014|ref|YP_679223.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281695|gb|ABG59881.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 323

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 16/256 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           +L ++    K   D  +  +NQ  Q     N     + +             S   K + 
Sbjct: 57  NLVLEHTALKKRYDSLLAISNQLLQDTTDLNAALRKTQANYEALNNTYERLLSTHNKIIN 116

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLF 217
            +    + +NK        + K +    +R++R+ +L K I+     +    N V   L 
Sbjct: 117 YNASELEKLNKSLAKRELEVGKLQADLSERERRVNELEKIIADKERAVNELRNKVTSALL 176

Query: 218 ETTRTGILISIIDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
                 + I + D +         +F   S+   P+ +  L+K+  VL    ++ I + G
Sbjct: 177 NYKDKDLTIQVKDGKVYVSLAEQLLFKSGSTDVDPKGVEALKKLAAVLKEQQDITIMVEG 236

Query: 271 HTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDP 326
           HTD  P     N  +DNW LS+ RA S  ++L  +GV    I  + +G         +  
Sbjct: 237 HTDDVPVSKGTNGIKDNWDLSVLRATSITRILTGAGVDP--IHVVPAGHGEFIPVATAKT 294

Query: 327 MNSA--NRRIDILVED 340
             +   NRR +I++  
Sbjct: 295 AEARSQNRRTEIILTP 310


>gi|298346001|ref|YP_003718688.1| flagellar motor protein B [Mobiluncus curtisii ATCC 43063]
 gi|304390241|ref|ZP_07372195.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657506|ref|ZP_07910388.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236062|gb|ADI67194.1| flagellar motor protein B [Mobiluncus curtisii ATCC 43063]
 gi|304326723|gb|EFL93967.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315491978|gb|EFU81587.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 307

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 104/326 (31%), Gaps = 71/326 (21%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + K+      P+N   W + Y D +TV+M  FLV++ I+  D      +         +L
Sbjct: 1   MAKRKHECPEPDNTERWAVSYLDMITVMMCLFLVLYAISQVDQGKLSKL-------RTSL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                      NP +      I                                +   ++
Sbjct: 54  AAGFNSTIQIANPLQTDGGLGI--------------------------------LAGSTS 81

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           + Q      +L ++ E                 E    +   S    +  + +++L+D  
Sbjct: 82  AVQLGTLMGNLNQNPES--------------QPERIQAMREASHLNSIKKQVEEQLKDAG 127

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+                +    T  G+++ ++   N   F    +   P    VL+ I 
Sbjct: 128 KE--------------GSLAMRITDKGLVLGMV--ANDTYFKTGDATIQPTAREVLKAIS 171

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L    E I+I G+ D  P  +     N+ L+  RA      L   GV   ++  IS  
Sbjct: 172 PTLMSIEEGIAIEGYADPQPISSAKFPSNYHLASARAIEVLIALKDDGVPGTKLRSISYG 231

Query: 316 AHHR-LKIASDPMNSANRRIDILVED 340
           A H+          + NRR+DI++  
Sbjct: 232 ADHQTEATPGQDAWAFNRRVDIVIMS 257


>gi|298206940|ref|YP_003715119.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83849574|gb|EAP87442.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 321

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
              +        S      +   +L  +S++ + L    + +K    EE   L  L  + 
Sbjct: 83  NATKQSYESLQKSYDALEANSSKALAENSKQNRALIAELEDKKKALAEERATLDKLKADL 142

Query: 183 ILAMKRKKRLQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
                R   L+ +        + + + +S  + D   KG+  E     + +S+    N  
Sbjct: 143 ETRSNRINELESVIAAKEAKMQALKTAVSSALGDFEGKGLTVEQRNGKVYVSM---ENKL 199

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR--DNWRLSLDRA 292
           +F+  S     E    + ++GEVLA + ++ + I GHTD  P+       DNW LS  RA
Sbjct: 200 LFNSGSWAVGSEGRRAVNQLGEVLASNPDIAVLIEGHTDNVPYGGNGPLQDNWDLSTKRA 259

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            S   +L ++   + +    +G   +    ++D     + NRRI++++  +
Sbjct: 260 TSIVNILRENSQIDPQNLTAAGRGEYLPIASNDSATGKAKNRRIEVILTPK 310


>gi|257484887|ref|ZP_05638928.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 295

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    +IP  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++ A +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I      P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGDQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|160899279|ref|YP_001564861.1| hypothetical protein Daci_3845 [Delftia acidovorans SPH-1]
 gi|160364863|gb|ABX36476.1| type IV / VI secretion system protein, DotU family [Delftia
           acidovorans SPH-1]
          Length = 443

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 10/154 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              +  L  ++   L   + + +               ++I  R   +FD ++++  P  
Sbjct: 276 AATVATLKPRLRQFLEPEIREGL-----VSVRDEADRSTVI-LRGDGLFDPAATVVKPRY 329

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307
           + V+ ++   L      + + G+TD  P R      NW LS +RA +  Q+L    + + 
Sbjct: 330 VQVIHRVAAALDEVPGKVVVNGYTDNLPIRTARFPSNWNLSQERAQAVSQML-GGSLRDR 388

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           +     G A       ++     + NRR++I++ 
Sbjct: 389 QRLHAEGRADSDPVAPNNTAEGRALNRRVEIVLL 422


>gi|71737581|ref|YP_275515.1| flagellar motor protein MotD [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71558134|gb|AAZ37345.1| chemotaxis protein MotB [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|283133060|dbj|BAI63827.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci]
 gi|320325140|gb|EFW81209.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329399|gb|EFW85392.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889033|gb|EGH21694.1| flagellar motor protein MotD [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986516|gb|EGH84619.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 295

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    +IP  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++ A +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|284040562|ref|YP_003390492.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819855|gb|ADB41693.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 294

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 9/210 (4%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             Q ++ K +     ++  DL   +       ++    L   +K         +R   L 
Sbjct: 72  QAQIDYLKKTNINLLDRMSDLSIVSKSGAESIRKSLETLNEQTKYTNNLNSTIQRKDSLN 131

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
             +  +L   + D   + V  E  +  + +SI D     +F   S    P+   VL K+ 
Sbjct: 132 LALVMSLKRSLDDINDQDVQVEVKKGVVYVSISD---KLLFKSGSYDITPKAETVLGKVA 188

Query: 257 EVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
           +V+  H    I + GHTDA P    A +DNW LS  RA S  + L    GV+ +R++   
Sbjct: 189 KVVNDHKDLDILVEGHTDAVPISTPAIKDNWDLSALRATSVVRTLQAKFGVAPERLTA-G 247

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341
           G +    K  +        NRR +I++  +
Sbjct: 248 GRSEFAPKDDNTTAVGRQQNRRTEIIITPK 277


>gi|78358626|ref|YP_390075.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221031|gb|ABB40380.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 242

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 8/176 (4%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
            +    +  L +     M++ +RL+DL          +    + + +       G+ I +
Sbjct: 67  PQRILMVMELLESPRDVMQKPERLKDLLWPEDMLPPEVDTATLDENLRIMQDPQGLAIVL 126

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            D     +F   S         +L  + +VL +S+  ++I GHTD SP   +  DN+ LS
Sbjct: 127 TD---GVLFRPGSWELTAPARKLLAPLADVLEYSSADVTISGHTDDSPASGV--DNYDLS 181

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             RA +     ++SG+  +R   +SG+   +   ++      + NRR++IL++  Q
Sbjct: 182 GRRAMAVLDFFLESGLGAERF-SVSGYGPDKPLESNATPQGRAQNRRVEILLKTTQ 236


>gi|114320554|ref|YP_742237.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226948|gb|ABI56747.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 266

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
            E     +LI          F   S+      + +L  +  VLA     I + GHTD  P
Sbjct: 112 VERLDENVLIRF---PEKAAFPSGSADVNASFLPILHTVAGVLAGQGGTIRVSGHTDDVP 168

Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANR 332
                 R NW LS  RA     +L+++  +   R     G A  R    +      + NR
Sbjct: 169 IDTERFRSNWELSTARATEVVHLLLEAAPIEPGRFIA-QGHADTRPLRPNTSPENRARNR 227

Query: 333 RIDILV 338
           R+D+L+
Sbjct: 228 RVDVLI 233


>gi|46579053|ref|YP_009861.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603363|ref|YP_967763.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46448466|gb|AAS95120.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563592|gb|ABM29336.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311232899|gb|ADP85753.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 257

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K  + +       +  +  +++   ++      P ++ ++L  ++    +    +++  
Sbjct: 53  AKTDIAKFQAALGSIQDAFGVQRERPQDIEAAFSPTTESQVLITEKLDAAEQEQLEVARM 112

Query: 203 LSGLVAD--NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           L  LV +   I K  +      GI + +    +  +F+  S+  LP+   V++ +  +L 
Sbjct: 113 LKELVNEQAEIAKNAIISAEEGGINLRV---NSRALFEPGSARLLPDGEAVIRLVHTILL 169

Query: 261 HSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                + + GHT +  PF +    +W LS  RA +  + ++  GVS  R+  + G+   R
Sbjct: 170 KHKYDLIVEGHTGSREPFSSQFPTHWELSAARAVTLVRHILSLGVSPRRLKAV-GYGDTR 228

Query: 320 LKIA-SDPMNSANRRID 335
             +  +D     NRR++
Sbjct: 229 PLVPENDDTGELNRRVE 245


>gi|317051549|ref|YP_004112665.1| OmpA/MotB domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946633|gb|ADU66109.1| OmpA/MotB domain protein [Desulfurispirillum indicum S5]
          Length = 252

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 75/173 (43%), Gaps = 7/173 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           + ++      P+     +    + +++++   I + +     ++ V+ V  +    GI +
Sbjct: 63  LGRQTEVSPVPVVVTAQIQEVEQIQMEEVINAIQAMVQVTGLEDSVE-VDSQQDTEGIKV 121

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285
           ++ ++    +FD+  +   P    +L ++  ++  S   + I GHTD      +    NW
Sbjct: 122 TLAEE---ILFDRGRAEIKPAAFPILDQLAAIIHQSKRKVRIEGHTDNVQVPASRYPTNW 178

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            LS  R+ +  +  +++   + RI   +G+      + +  +   + NRR++I
Sbjct: 179 ELSTARSVNVVKYFVQARNLDPRIFVAAGYGEFSPVVPNITESNRAKNRRVEI 231


>gi|255068383|ref|ZP_05320238.1| OmpA family protein [Neisseria sicca ATCC 29256]
 gi|255047376|gb|EET42840.1| OmpA family protein [Neisseria sicca ATCC 29256]
          Length = 421

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 17/183 (9%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           ++ S+  + +     ++  K+ ++  K++      ++   L   +A  +   V  E  + 
Sbjct: 217 MQWSLGDDFDVASTKVNNLKLPSVTAKQQETQSTVRLRPLLENEIARKL---VSVEDFQD 273

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
              ++I+      +F+  S+    +   VL ++ + L      I + G+TD  P +++  
Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLARVSQALDSVEGQIVVTGYTDNQPIQSLNF 330

Query: 282 RDNWRLSLDRAYSAYQVLM----KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             NW LS  RA +  ++L+      GV   RI +  G         +D     + NRR++
Sbjct: 331 PSNWHLSQARADAVKEILLNYIKNGGV---RI-RSEGRGSTDPVAPNDTLENRAKNRRVE 386

Query: 336 ILV 338
           I +
Sbjct: 387 ITL 389


>gi|229827389|ref|ZP_04453458.1| hypothetical protein GCWU000182_02777 [Abiotrophia defectiva ATCC
           49176]
 gi|229788327|gb|EEP24441.1| hypothetical protein GCWU000182_02777 [Abiotrophia defectiva ATCC
           49176]
          Length = 305

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 125/331 (37%), Gaps = 35/331 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   ++ P    +W   ++D M +L+ FF++++ +++TD      I +         
Sbjct: 1   MARKKKTEEAPAGAPAWMATFSDLMNLLLCFFVLLFSMSSTDRAKYNEIVE--------A 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +T+S  IF                S         + +  G +   +  +   N     + 
Sbjct: 53  VTSSFSIF----------------SGGGSALDQGILISSGVSQLNELAEYYSNLAVDNAA 96

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +      N  + + +   +     D   +   EE+  +      K    + K+  +   
Sbjct: 97  KEDGTKGGNGKSDNGKIENNNENKPDNNNNGKAEEDKEVTKDEVVKKYQKELKETAEKNY 156

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +K S  ++    +++V+ +  +T+   I +SI       +FD  S+        VL K  
Sbjct: 157 EKASEAINQFKLNDMVQ-LKMDTSYNYIGLSI---DGYFLFDSGSAELKKGADKVLDKAA 212

Query: 257 EVLAHS-TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312
            +L       I I GHTD  P  N    ++N  LS  RA +  + L +   +   ++S  
Sbjct: 213 GILMKFKDADIVIEGHTDNVPQTNTVKYKNNLWLSGARAMTVLEYLTEVEHMDPKKLSA- 271

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           SG   +    ++        NRR++I + ++
Sbjct: 272 SGKGEYEPIASNKTAEGRQKNRRVEIKIFNK 302


>gi|222087026|ref|YP_002545561.1| OmpA family protein [Agrobacterium radiobacter K84]
 gi|221724474|gb|ACM27630.1| OmpA family protein [Agrobacterium radiobacter K84]
          Length = 321

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 18/319 (5%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
            +  +M    V  +            ++  N     +    + +  E+N  +    +  +
Sbjct: 4   LLMAIMFLLTVFVLGQFILSREITGRDEALNRLNSRINDLVEQLALEKNGKQDLEDSVAN 63

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L     + +N                +           +  E  + S    S+      +
Sbjct: 64  LQASLSMAENERSRLQALLTAGSGNGQAAQQQVGTLTQELDEQKQASARALSQVELLNQQ 123

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDLAKKISSTLSGLVADNIVKGVL 216
              L   I   E       SK++   +K     +RL     +    L+   +D   +   
Sbjct: 124 IAALRSQIAAVEAALQASESKDQSSQVKIADLGRRLNVALAQRVQELNRYRSDFFGRLRE 183

Query: 217 FETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-------- 266
             + R  I I       ++  +F   ++   P     + K+   L   ++ I        
Sbjct: 184 ILSDRDNIRIVGDRFVFQSEVLFPSGAADLNPAGQTEMAKLAAALIDLSKEIPPEINWVL 243

Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + GHTD  P     R  DNW LS  RA +  + L+  GV  DR+   +GF   +     
Sbjct: 244 RVDGHTDNVPLSGNGRYPDNWALSSARAIAVVKFLIAQGVPADRLVA-AGFGEFQPIAPG 302

Query: 325 DPMNSA--NRRIDILVEDR 341
           D   +   NRRI++ + ++
Sbjct: 303 DTPEARATNRRIELKLTEK 321


>gi|149370978|ref|ZP_01890573.1| outer membrane protein, OmpA family [unidentified eubacterium
           SCB49]
 gi|149355764|gb|EDM44322.1| outer membrane protein, OmpA family [unidentified eubacterium
           SCB49]
          Length = 323

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 105/281 (37%), Gaps = 12/281 (4%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
               +        +S G+   +   ++   +K  L++D    +   D   G  +  +   
Sbjct: 40  ASLMSQLDNVEGASSIGLEQIKEDLQKCKSDKTQLAMDLAGAQAKYDKIKGDYDALEANS 99

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
               +     N       +      + K  DL +   + K      +     + + + + 
Sbjct: 100 SENLSENLDRNRALLTELEAKERILNTKEADLIEQEKVLKRAQNNLDASAARVLELEGII 159

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             ++ ++  L   IS+ L+    +    G+  E     + +S+    N  +F+  S    
Sbjct: 160 AAKEAQMDALKNAISAALTSFEGN----GLTVEQREGKVYVSM---ENKLLFESGSWDVN 212

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS 302
                 +  +G+VL  + E+ + I GHTD  P+  + + +DNW LS  RA +   +L ++
Sbjct: 213 SRGREAVVALGKVLGDNKEIAVLIEGHTDNVPYGEKGLIKDNWDLSTKRATAIVAILTEN 272

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
                     +G   +    +++     + NRRI++++  +
Sbjct: 273 NNIPKENLTAAGRGEYAPIASNNTSEGKAKNRRIEVVLTPK 313


>gi|332668363|ref|YP_004451151.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332337177|gb|AEE54278.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 312

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 17/302 (5%)

Query: 45  MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104
           +AFF V+ +  ++    K+ +          + T  +   +  N         ++  +  
Sbjct: 8   LAFFCVLCLTFSSCVMKKQYLA---------MQTDLQTQLEAANKDLGKLGVSLNEYMSR 58

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
                    ++G   +  Q               Q    K+   +      DL K +   
Sbjct: 59  LAACERDKERLGGDIRTNQSAMQLREEQINDLKAQIADLKSQREKQLNTVTDLTKISSSA 118

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
               KE    L    K   L    + R   +   ++  L G++ + +    +        
Sbjct: 119 NDNIKETLAQLERKDKYIHLLQAARTRADSINLALAVNLKGVLKEGLDDKDVDVKVDK-- 176

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-AR 282
            +  ++  +  +F   S+    +   VL KI ++L    +  + + G+TD  P +     
Sbjct: 177 TVVFVNLSDKMLFQSGSATMTTKANEVLGKIAQILKSRPDLEVMVEGYTDNKPIKTACIE 236

Query: 283 DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           DNW LS+ RA +  + L K  GV  +R+   +G   +     +D       NRR  I++ 
Sbjct: 237 DNWDLSVKRATAVARTLQKTHGVDPNRLIA-AGRGEYNALATNDTEEGRSTNRRTRIIIL 295

Query: 340 DR 341
            +
Sbjct: 296 PK 297


>gi|146338211|ref|YP_001203259.1| hypothetical protein BRADO1110 [Bradyrhizobium sp. ORS278]
 gi|146191017|emb|CAL75022.1| Putative flagellar motor protein MotB [Bradyrhizobium sp. ORS278]
          Length = 342

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 30/266 (11%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS-QQSEHCKNSLTRDSEKGKDLCKSTDL 163
            +      L+ G +N + +  R++     L+N+   +    N L R  E  K +      
Sbjct: 78  SLDDQVAQLRAGLSNAEAERDRIKGLYDGLANAGSNATGRANELNRALESEKQVTARALA 137

Query: 164 E--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209
           +         ++ ++       L   +    + + R+ DL  +++  L+  V +      
Sbjct: 138 QIEVLNQQISALRRQLAALEDALDASEKRDKESQNRIADLGSRLNVALAQRVQELTRYRS 197

Query: 210 ---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------- 259
                ++ +L       ++      ++   FD   +  LPE    L  +   L       
Sbjct: 198 EFFGRLRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALIDLDKQI 257

Query: 260 -AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
            A  + V+ + GHTD  P  + + + NW LS  RA S  Q L+  GV   R+   +GFA 
Sbjct: 258 PAEISWVLRVDGHTDVRPINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVA-AGFAE 316

Query: 318 HRLKIASDPMNS--ANRRIDILVEDR 341
            +    ++   +   NRRI++ + +R
Sbjct: 317 FQPLDTANTDEAFRRNRRIELKLTER 342


>gi|228471996|ref|ZP_04056764.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276608|gb|EEK15321.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 278

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +  +L G++ +   + +  +  +  + +SI D+    +F   S    P    VL K+ +V
Sbjct: 117 LVQSLKGVLGNLDDEDITVQVDKGVVYVSISDKM---LFSSGSYNVTPRAREVLGKVAKV 173

Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           + +  +    + GHTD  P +N   +DNW LS+ RA +  ++L    GV+  R++  +G 
Sbjct: 174 VNNKPDFEFMVEGHTDNVPIKNTCIKDNWDLSVLRATAVVRILQNDFGVTASRMTA-AGR 232

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341
             +      AS    + NRR  I+V  +
Sbjct: 233 GEYVPVTSNASADGRALNRRTRIVVLPK 260


>gi|23013938|ref|ZP_00053784.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 218

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S++K +      + +     +  ++    L    S  L  +    +   V       GI+
Sbjct: 35  SMSKIDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEMLGQVTGAGVEDTVDVGRDDKGIV 94

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA- 281
           +++    +  MF   S+   PE + ++++I   L         I I+GHTD +P R    
Sbjct: 95  LNL---ASGTMFKPGSAEVRPEILPLMKEISATLKQERFLNYQIDIQGHTDDTPVRTPQF 151

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMN-SANRR 333
             NW LS  RA S  +V+ + G+  +R+ K++  A    ++ +        P N + NRR
Sbjct: 152 PSNWDLSAARALSTLKVMNELGIPTNRM-KLAALADTAPRVPNRSDTGKAYPENQAINRR 210

Query: 334 IDILVEDR 341
           ++I +  R
Sbjct: 211 VEIHIYPR 218



 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF---------NPFGKNLMTA---- 79
           W + YAD +T+LMAFF+V+  ++  D +  + ++Q               ++L +     
Sbjct: 15  WLLSYADMITLLMAFFIVLVSMSKIDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEMLGQ 74

Query: 80  --SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+ D  +         ++L+        S +++       K+         +L+  
Sbjct: 75  VTGAGVEDTVDVGRDDKGIVLNLASGTMFKPGSAEVRPEILPLMKEISATLKQERFLNYQ 134

Query: 138 QQ-SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                H  ++  R  +   +   S     S  K  N    P ++ K+ A+    
Sbjct: 135 IDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGIPTNRMKLAALADTA 188


>gi|311696643|gb|ADP99516.1| flagellar motor protein MotB [marine bacterium HP15]
          Length = 277

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E + ++           E +   +    + DLA ++   L   VA    + +     + 
Sbjct: 85  PEPTESQTREPEFIDERAEGVAPTQIPGGVIDLASRMIRELESEVA---SEALSVNYDQN 141

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281
            ++I   ++     F    +   PE I +++++  VL+  T  + + G+TD  P  +   
Sbjct: 142 QVVIRFSEEAT---FRSGEAAIKPEMIPIIERVVNVLSACTGDVLVSGYTDDRPISSDRY 198

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           R NW LS  RA S    L+    V  DR+   +G A       +D     + NRR++I +
Sbjct: 199 RSNWDLSAARAVSVVHELVMNRQVPADRVVA-AGRAETNPLAPNDSPENRALNRRVEIAI 257

Query: 339 EDRQ 342
            + +
Sbjct: 258 RNPE 261


>gi|330876044|gb|EGH10193.1| flagellar motor protein MotD [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 295

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   G++  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|221196011|ref|ZP_03569058.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221202685|ref|ZP_03575704.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221176619|gb|EEE09047.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221182565|gb|EEE14965.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 484

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +K++ D+A+            L  L+ D I  G +  +       S++  R   MF
Sbjct: 322 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 379

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 380 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSRQFASNQALSEERATQVM 439

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           Q+L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 440 QMLQAAGVQANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 480


>gi|297180147|gb|ADI16369.1| flagellar motor protein [uncultured bacterium HF130_12L15]
          Length = 343

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 108/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    +   +    +    +  +  +M    V  +            ++        +  
Sbjct: 5   RTRRRERGVDYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSREITGKDEVLTRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E++  + +     +L       +          +Q               +  
Sbjct: 65  LTQLLALERSNTQDAEDQLANLQASLQAAETERSRLEQLLSQGAGADAAAEEEIGTLSGA 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195
             E  + S    S+      +   L K I   E       ++++  + K     +RL   
Sbjct: 125 LDEERQISQRALSQVELLNQQIAALRKQIGALEGALEVSEARDRESSTKIADLGRRLNVA 184

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             +    L+   +D   +     + R  I I       ++  +F   S +        + 
Sbjct: 185 LAQRVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGSEVINDAGRTEMA 244

Query: 254 KIGEVLAHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303
           K+ E +    + I         + GHTD  P       RDNW LS  RA S  + L+  G
Sbjct: 245 KLAEAIIDLQKEIPPEINWVLRVDGHTDNVPLSGTGRYRDNWELSSARATSVVKYLISQG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V   R+   +GF   +  +  D  ++   NRRI++ + +R
Sbjct: 305 VPASRLVA-AGFGEFQPLVEGDTPDARNKNRRIELKLTER 343


>gi|327188824|gb|EGE56018.1| putative outer membrane protein (OmpA protein) [Rhizobium etli
           CNPAF512]
          Length = 343

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 98  IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKD 156
           ++   ++ +  +  +L+    N + +  RL+  +   S  Q +   +  ++T++ ++ K 
Sbjct: 71  LEKGSNQDLQDSVANLQASLANAEGERSRLQALLSAGSGGQDAAQKRIGAMTQELDEQKQ 130

Query: 157 LCKSTDLE--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV- 207
           + +    +         ++  +       L   +      + ++ DL  +++  L+  V 
Sbjct: 131 VSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVALAARVQ 190

Query: 208 ------ADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                 +D   +     + R  I I       ++  +F    +   PE    + K+   L
Sbjct: 191 ELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAKLATAL 250

Query: 260 AHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
               + I         + GHTD  P       RDNW LS  RA S  + L+  GV  DR+
Sbjct: 251 LDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSARATSVVKFLIGQGVPADRL 310

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
              +GF   +     D  ++   NRRI++ + ++
Sbjct: 311 VA-AGFGEFQPIAPGDAPDARATNRRIELKLTEK 343


>gi|190893330|ref|YP_001979872.1| outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652]
 gi|190698609|gb|ACE92694.1| probable outer membrane protein (OmpA protein) [Rhizobium etli CIAT
           652]
          Length = 343

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 98  IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKD 156
           ++   ++ +  +  +L+    N + +  RL+  +   S  Q +   +  ++T++ ++ K 
Sbjct: 71  LEKGSNQDLQDSVANLQASLANAEGERSRLQALLSAGSGGQDAAQKRIGAMTQELDEQKQ 130

Query: 157 LCKSTDLE--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV- 207
           + +    +         ++  +       L   +      + ++ DL  +++  L+  V 
Sbjct: 131 VSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVALAARVQ 190

Query: 208 ------ADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                 +D   +     + R  I I       ++  +F    +   PE    + K+   L
Sbjct: 191 ELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAKLATAL 250

Query: 260 AHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
               + I         + GHTD  P       RDNW LS  RA S  + L+  GV  DR+
Sbjct: 251 LDLAKEIPPEINWVLRVDGHTDNVPLVGTGRYRDNWELSSARATSVVKFLIGQGVPADRL 310

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
              +GF   +     D  ++   NRRI++ + ++
Sbjct: 311 VA-AGFGEFQPIAPGDAPDARATNRRIELKLTEK 343


>gi|315654589|ref|ZP_07907495.1| OmpA/MotB domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315491053|gb|EFU80672.1| OmpA/MotB domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 308

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 71/326 (21%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + K+      P+N   W + Y D +TV+M  FLV++ I+  D      +         +L
Sbjct: 1   MAKRKHECPEPDNTERWAVSYLDMITVMMCLFLVLYAISQVDQGKLSKL-------RTSL 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                      NP + +    I                                +   ++
Sbjct: 54  AAGFNSTIQIANPLQTNGGLGI--------------------------------LAGSTS 81

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           + Q      +L ++ E                 E    +   S    +  + +++L+D  
Sbjct: 82  AVQLGTLMGNLNQNPES--------------QPERIQAMREASHLNSIKKQVEEQLKDAG 127

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+                +    T  G+++ ++   N   F    +   P    VL+ I 
Sbjct: 128 KE--------------GSLAMRITDKGLVLGMV--ANDTYFKTGDATIQPTAREVLKAIS 171

Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L    E I+I G+ D  P  +     N+ L+  RA      L   GV   ++  IS  
Sbjct: 172 PTLMSIEEGIAIEGYADPQPIASAKFPSNYHLASARAIEVLIALKDDGVPGTKLRSISYG 231

Query: 316 AHHR-LKIASDPMNSANRRIDILVED 340
           A H+          + NRR+DI++  
Sbjct: 232 ADHQTEATPGQDAWAFNRRVDIVIMS 257


>gi|28869189|ref|NP_791808.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852429|gb|AAO55503.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 295

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   G++  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|330961246|gb|EGH61506.1| flagellar motor protein MotD [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 265

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLLKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLLKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDN 284
           + I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P   +    N
Sbjct: 130 VEI-ELNSSMLFGSGDAMPSDKAFSIIEKVSGIVKRFDNPIHVEGFTDDQPINTSQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  L   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLLKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLLKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|213967534|ref|ZP_03395682.1| motB protein [Pseudomonas syringae pv. tomato T1]
 gi|301382871|ref|ZP_07231289.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062803|ref|ZP_07254344.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato K40]
 gi|302131302|ref|ZP_07257292.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213927835|gb|EEB61382.1| motB protein [Pseudomonas syringae pv. tomato T1]
          Length = 295

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   G++  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|332521842|ref|ZP_08398291.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042514|gb|EGI78716.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 282

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 23/244 (9%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTD 162
             T               + Q L++ +  + +S Q+  E  K+     ++  K++ KS +
Sbjct: 36  TATVKLNKCLADEAASAARLQELKDRLADMKSSNQALIETSKDLTVLTTQGAKNVEKSLE 95

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             K  + + +     L+K+  + +     +  L K++             + +     ++
Sbjct: 96  SLKEKDLKISRLQDALTKKDSVTLAL---VTSLKKEVGLN---------DEDIEINVEKS 143

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
            + IS+ D     +F   S         +L K+  V+         + GHTD  P+    
Sbjct: 144 VVFISLSD---KLLFKSGSYNITSRAKEILAKVATVINGKPNFEAMVEGHTDNVPYNRGG 200

Query: 282 --RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             +DNW LS+ R+ S  + L + GV  +++   +G   H   +++D     + NRR  I 
Sbjct: 201 VLQDNWDLSVKRSTSIVRALQELGVKPEQLIA-AGRGDHLPLVSNDTAENRAINRRTKIY 259

Query: 338 VEDR 341
           +  +
Sbjct: 260 ILPK 263


>gi|237799262|ref|ZP_04587723.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806231|ref|ZP_04592935.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022118|gb|EGI02175.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027345|gb|EGI07400.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S    E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  STKPAEPLLKESEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+ +++      I + G TD  P R      N
Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSDIVKRFDNPIHVEGFTDDQPIRTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +     A+    + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPVASNATAAGRAKNRRVVLVI 243



 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P  +   +  L   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSTKPAEPLLKESEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|224371370|ref|YP_002605534.1| MotB4 [Desulfobacterium autotrophicum HRM2]
 gi|223694087|gb|ACN17370.1| MotB4 [Desulfobacterium autotrophicum HRM2]
          Length = 425

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 21/244 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
             ++ + Q +         + Q E         +    ++   +D    + ++ +     
Sbjct: 183 AQKEIEAQEIRIQALSAVLASQKEAVAREKQLSATARAEVTLLSDQITRLREQLSMISNA 242

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-----ISI---- 228
           LS       ++ +++ DL K+++  L+  V +       F      IL     + I    
Sbjct: 243 LSLANTQTQEKDEKIVDLGKQLNIALARKVNELEKYQSEFFGRLRKILGNNPAVQIEGDR 302

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280
              +   +F+  S++   +  + L  + E L    + I         I GHTD  P  N 
Sbjct: 303 FVLQAGLLFESGSAVLGDQGRIHLTTLAETLMDIAKKIPDDINWILRIDGHTDRVPINNA 362

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
           A   NW LS  RA +  + L + GV E R++  +GF+ +     +D   +   NRRI+I 
Sbjct: 363 AFPSNWELSAARAVAVVRFLSQRGVPEKRMAA-AGFSKYHPIDRADTPAAYQRNRRIEIK 421

Query: 338 VEDR 341
           +  +
Sbjct: 422 LTRQ 425


>gi|88802157|ref|ZP_01117685.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
 gi|88782815|gb|EAR13992.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
          Length = 278

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 12/254 (4%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S +  + L  D+  T+  +     +  +    +  E            +  KN+L +   
Sbjct: 19  SKKEFVALQADKTKTQEELVAVKSNLQKCIIDKEKEVLSLEERVKYLQDDKKNALKQVEN 78

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
                  S+D  K++  + +     ++  +    ++      +   ++  L+  + D   
Sbjct: 79  LTVLTQSSSDNIKTVIAQLSEKDKYINGVREAMTQKDSINLAIKYHLTKNLTEGIQD--- 135

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           K +     +T + ISI D     +F   S        VVL+KI +V+    E  + I GH
Sbjct: 136 KDIEVNVEKTVVFISISD---KLLFKSGSYNVTDGAYVVLEKIAKVINDQPEMEVMIEGH 192

Query: 272 TDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN- 328
           TD+SP  R I +DNW LS  RA +  ++L  K GV  +R+   +  + +     +D    
Sbjct: 193 TDSSPIKREIIQDNWDLSALRATAITRILQYKFGVQPNRLIAAA-RSQYVPLAPNDTAEN 251

Query: 329 -SANRRIDILVEDR 341
            S NRR  I++  R
Sbjct: 252 KSKNRRTKIIIMPR 265


>gi|83311658|ref|YP_421922.1| flagellar motor protein [Magnetospirillum magneticum AMB-1]
 gi|82946499|dbj|BAE51363.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 220

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 19/187 (10%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           I+K +   +     + I   + K  LQDL  ++   ++G     +   V       GI++
Sbjct: 41  IDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEVLGQVAGA---GVEDTVDVGRDDKGIVL 97

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA-R 282
           ++    +  MF   S+   PE + ++++I   L         I I+GHTD +P R     
Sbjct: 98  NL---ASGTMFKPGSAEVRPEILPLMKEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFP 154

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMN-SANRRI 334
            NW LS  RA S  +V+ + G+   R+ K++  A    ++ +        P N + NRR+
Sbjct: 155 SNWDLSAARALSTLKVMNELGIPTSRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRV 213

Query: 335 DILVEDR 341
           +I +  R
Sbjct: 214 EIHIYPR 220



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 16/190 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69
           + K     +       W + YAD +T+LMAFF+V+  ++  D +  + ++Q         
Sbjct: 1   MSKSKFHKENKEAAEDWLLSYADMITLLMAFFIVLVSMSKIDKNKYEQVQQGMAKDIGLR 60

Query: 70  --NPFGKNLMT------ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
                 ++L +      A  G+ D  +         ++L+        S +++       
Sbjct: 61  ETKTPLQDLRSEVLGQVAGAGVEDTVDVGRDDKGIVLNLASGTMFKPGSAEVRPEILPLM 120

Query: 122 KQYQRLENNIFYLSNSQQ-SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           K+         +L+       H  ++  R  +   +   S     S  K  N    P S+
Sbjct: 121 KEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGIPTSR 180

Query: 181 EKILAMKRKK 190
            K+ A+    
Sbjct: 181 MKLAALADTA 190


>gi|307944516|ref|ZP_07659856.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4]
 gi|307772265|gb|EFO31486.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4]
          Length = 344

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 104/310 (33%), Gaps = 16/310 (5%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           ++A F +   ++  D    +   Q  +   + L     G  + ++       +  D + +
Sbjct: 39  MLAQFFLSQQLSGRDTVLNRLNAQ-ISELTQLLALERAGARELEDTITGLQASLSDATGE 97

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
                  ++   G  +          N+                  + +      +    
Sbjct: 98  RDRLLGLLESSSGEADAAGGKAAQLENLLDDEKQVSQRALAQVELLNQQISALRRQLAAA 157

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
             ++   E       +K   L  +    L    +++S   S       ++ +L + +   
Sbjct: 158 NAALEASEAKENQSQAKIASLGKRLNAALVQRVQELSRYRSDFFGR--LREILSQRSDIR 215

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDAS 275
           ++      ++  +F   S    PE  V L+K+ + +      I         + GHTDA 
Sbjct: 216 VVGDRFVFQSEVLFGSGSEDINPEGQVELKKLADAIKELAVQIPDEINWVLRVDGHTDAR 275

Query: 276 PFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
           P     R  +NW LS  RA S  + L+  G+   R+   +GF   +     D     + N
Sbjct: 276 PLSGTGRLRNNWELSAARAISVVRYLVDQGIDPKRLVA-AGFGEFQPLEEGDTPEALAKN 334

Query: 332 RRIDILVEDR 341
           RRI++ + +R
Sbjct: 335 RRIELKLTER 344


>gi|188581568|ref|YP_001925013.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179345066|gb|ACB80478.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 337

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 107/297 (36%), Gaps = 28/297 (9%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130
           F    +T    + +  N       + + L       +      + +T    + +R     
Sbjct: 42  FLSQELTGRDAVLNRLNRQIADLTDLLALERSGRRAQEEAAAGLRNTLTATEAERDRLRA 101

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184
           +   S + Q +         +E+G        +E      +++ ++       L+  +  
Sbjct: 102 LADASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161

Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235
             + + R+ +L  +++  L+  V +           ++ ++   T   I+      ++  
Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQIIGSRTDVRIVGDRFVLQSEV 221

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286
           +F   S+   PE    L +I   +        A    V+ + GHTDA P ++     NW 
Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAKEIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
           LS  RA +  Q L   G+   R+     F   +   +  S+   + NRRI++ + +R
Sbjct: 282 LSAARAIAVVQYLRTKGIPPQRLLA-GAFGEFQPLDSGTSEDAYARNRRIEMKLTER 337


>gi|323528401|ref|YP_004230553.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323385403|gb|ADX57493.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K++ S L+ L  +   + +    T  G+ I+I       +F+   +  LPE+  VL +I
Sbjct: 92  KKQLLSLLAPLQDN---RQITISHTPQGVEIAI---NAKVLFNSGDARLLPESFAVLGQI 145

Query: 256 GEVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             VL   +   I + GHTD+ P        NW LS  RA +  +     G+   R++ I 
Sbjct: 146 ATVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADRGIEAHRMAAI- 204

Query: 314 GFAHHRLKI 322
           G A +   I
Sbjct: 205 GRADNFPLI 213



 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 19 KKVAIDDTPNNLGS-----WKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          K         + G      W I YAD +T LM  FL ++++    +   +
Sbjct: 14 KTGHHGHDGAHDGGEQPDRWLISYADLITTLMVLFLALYVLQLAKNSELQ 63


>gi|317133447|ref|YP_004092761.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471426|gb|ADU28030.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 259

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 85/209 (40%), Gaps = 13/209 (6%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            ++ Q++     ++ +     +   + + + ++ N          +  ++++     ++Q
Sbjct: 36  KTDVQKASQVAEAIRKGFNASQQAVQQSPVSQNTNSTNITMSNTSTTSEVIS-----QVQ 90

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D +         +    + K V   +T  G++I++ D     ++   S++       ++ 
Sbjct: 91  DWSSLYDQVTKLVAQAGLQKNVDLSSTSKGLVITLKDNT---LYTPGSAVMNQPGQDLVL 147

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +IG+ L       I + GHTD+ P  N    DN  LS  RA +  + L+  G+   +I+ 
Sbjct: 148 RIGDALKQVNYALIIVEGHTDSDPIHNAQFQDNIELSSARADNVERALIGRGLDAAKIAA 207

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338
           + G         +D     + NRR+ I +
Sbjct: 208 M-GRGDTVPVAPNDTPANKAKNRRVVITI 235


>gi|229917739|ref|YP_002886385.1| OmpA/MotB domain protein [Exiguobacterium sp. AT1b]
 gi|229469168|gb|ACQ70940.1| OmpA/MotB domain protein [Exiguobacterium sp. AT1b]
          Length = 259

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 9/208 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S   +  L + S+    +          +   N  +    K    A  R   L  L +
Sbjct: 37  ASSNIDQTKLEKMSQSFNQVFSGGVSVFQASTASNSDIERTDKTNTTANPRTYELAQLDE 96

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                   +  + +   +      +G++++I D     +F+   +    +   V Q I +
Sbjct: 97  LKEDVNKYIKKNGLESQIKATINSSGLVLTIQD---RALFNLGEATLDADARAVAQNISQ 153

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISG 314
           +L  + +  I + GHTD  P        NW LS  RA +    +L    ++  + +  S 
Sbjct: 154 ILEKAGKREIVVSGHTDNIPINTARFPSNWELSSARATAFMRGLLANDALNPAQFTLAS- 212

Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340
           +   +    +D     S NRR+++L++ 
Sbjct: 213 YGEFKPIATNDTEEGRSKNRRVEVLIKP 240



 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          +K+K   D   +    W I YAD +T+L+A F+V++  +  D    + + Q FN      
Sbjct: 1  MKRKKKHDHEEHIPEGWLIPYADLLTLLLALFIVLFASSNIDQTKLEKMSQSFNQVFSGG 60

Query: 77 MTASKGIFDEQNPPERSSQNK 97
          ++  +      +  ER+ +  
Sbjct: 61 VSVFQASTASNSDIERTDKTN 81


>gi|149918478|ref|ZP_01906968.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
 gi|149820778|gb|EDM80188.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1]
          Length = 258

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 15/236 (6%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
              +    ++ E          +S   +      +E   +       ++   K       
Sbjct: 23  EAQEALAAKQAEVTELQKELDSKSALSEQHEAAIAELKAEQEAHVATQEKATKLAAKVED 82

Query: 177 PLSKEKILAMKRKKRLQDLA--KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
             SK   L  + KK+ + LA  K +  TLS  + + I  G +  + R G L+  +D  + 
Sbjct: 83  LESKAGSLEGELKKKDKALAAVKALQETLSKSLVEEIETGDIRVSERHGYLV--VDVSDK 140

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIA-----RDNWRL 287
            +F    +        +L ++ E L    +  V  + GHTD  P ++         NW L
Sbjct: 141 VLFATGEATLSERGKKLLGRLAESLLTLPKDSVFQVGGHTDNQPIKSEEVLANFPTNWEL 200

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           S  RA +  + L +   V   R+   +GF+  R   ++      + NRRI+I +  
Sbjct: 201 SASRATNVVRFLEEECSVPGARLVA-AGFSEFRPVSSNKKAKGRAKNRRIEIALLP 255


>gi|171060724|ref|YP_001793073.1| hypothetical protein Lcho_4056 [Leptothrix cholodnii SP-6]
 gi|170778169|gb|ACB36308.1| type IV / VI secretion system protein, DotU family [Leptothrix
           cholodnii SP-6]
          Length = 460

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI------SIIDQRNTPMFDKSSSIPLPETIVVL 252
           +++         +   +  E     +++      S++  R   +F+  S+        +L
Sbjct: 286 VAAVAQPAPQPRLATFLRPEIAEGAVVVRDEVDRSVVTLRGDGLFEPGSATLAAPKEALL 345

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +++ + LA     + + GHTD+ P R+     NW LS +RA +  ++L+   V+ +R+ +
Sbjct: 346 RRVADALAQFGGAVLVTGHTDSQPIRSARFPSNWHLSQERAGAVRELLVSQQVATERV-R 404

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338
             G A     +A+D     + NRR++I +
Sbjct: 405 AEGRADGEPVVANDSAGNRALNRRVEITL 433


>gi|37676652|ref|NP_937048.1| hypothetical protein VVA0992 [Vibrio vulnificus YJ016]
 gi|37201195|dbj|BAC97018.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus
           YJ016]
          Length = 442

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           EKS            SKE             +A +I  +L+  +   ++K    +     
Sbjct: 257 EKSDQTFSQLMNLVPSKEIENQSADYISSLAVANQIQRSLATEIEMGLLK---VDALPDR 313

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR 282
           + I+        +F+  S+  +     V+ K+   L  +   I + GHTD +P   +   
Sbjct: 314 VRITFQSND---LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFP 370

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            NW LSL RA +    L  +G    R+    G    R  ++++     S NRR++I + 
Sbjct: 371 SNWHLSLARATALTDRLASAGKLSGRVIP-EGMGDARPLVSNETVEGRSINRRVEIDLL 428


>gi|312891209|ref|ZP_07750731.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296376|gb|EFQ73523.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 267

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 15/213 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              K++L+  +++   L +  +   S     +  +  LS +      R K ++D+ +K  
Sbjct: 48  ADLKSNLSSLNDRYNALDEKYNGLNSRYTASSSKVSQLSTDLQKREARLKEVEDILRKRD 107

Query: 201 STLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQK 254
              + L     ++  L    ++G+ + I      +   +  +F   S +   +    L++
Sbjct: 108 EATNAL--KEKLQKALLGFQQSGLTVDIRNGKVYVSLADKLLFPSGSIVIDEKGKSALKQ 165

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310
           +  VL    ++ I++ GHTD     N+   +DNW LS+ RA S  + L     V   R++
Sbjct: 166 LAAVLNKEPDIYIAVEGHTDDKKVINLGQIKDNWDLSVLRATSVTRYLTETEKVDPVRLT 225

Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
             +G    +      +    + NRRI+I++  R
Sbjct: 226 A-TGKGQFQPIDPAGTPEARAKNRRIEIVLSPR 257


>gi|54307864|ref|YP_128884.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9]
 gi|46912290|emb|CAG19082.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9]
          Length = 439

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           KI   L   V   ++     E       I I+   N  +F   S+        +L KI  
Sbjct: 294 KIQQLLQSEVERGLL-----EFEEHADRIRIVLNSND-LFASGSNEVKASIAPILSKIAH 347

Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGF 315
            L  +   I I GHTD  P   +    NW LSL RA +   VL        R+  +  G 
Sbjct: 348 TLESTNGRIMIVGHTDDKPIFTSKYPSNWHLSLARATAVANVLAMGTELRGRLWPEGQGD 407

Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342
           A+ R    S    ++NRR++I +  +Q
Sbjct: 408 ANPRNPNTSKANRASNRRVEIDLLYQQ 434


>gi|283853943|ref|ZP_06371147.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283570664|gb|EFC18720.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 357

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            +  +++  +         K ++ A + +++  +L     S ++ L  +   K +     
Sbjct: 35  PEALENLTSQLFRSKEEERKAELRATELERKAGELQTAYDSLVADLKGEVDSKEIRVRQF 94

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           R  + I+ +D     +F   S+   P    VL K+  VL    +  I + GHTDA P  +
Sbjct: 95  REMLEINFVD---KILFGSGSADISPRGREVLLKVAAVLGKVKDKSIYVVGHTDAQPIHS 151

Query: 280 I-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                NW LS  R+ S  + L    G++ +R + + G + ++   ++        NRR+D
Sbjct: 152 ALYPSNWELSTARSSSVIRFLSETGGLTPERFTAM-GRSFYQPVASNATAEGRQENRRVD 210

Query: 336 ILVED 340
           I+V D
Sbjct: 211 IIVAD 215


>gi|256370966|ref|YP_003108790.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007550|gb|ACU53117.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 258

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            +A++++  L+   A  + +       + G+++ I+   +   F   S+   P    V+ 
Sbjct: 105 QIAQEVNQALA---AQGLSQDAQVVVEQRGVVVRIL--SDKVFFATDSAALGPVGDAVVD 159

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
            I  VL      +SI G+TD+ P        N+ LS  RA +  + L K  G++ DR+S 
Sbjct: 160 AIAGVLRTLPNDVSIEGYTDSEPIVGGPYSSNFELSAVRAVTVLERLWKVDGINPDRLSA 219

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +GF      + +      + NRR+DI++  
Sbjct: 220 -TGFGDTHPLVPNTTPQNMAMNRRVDIVILS 249


>gi|313205304|ref|YP_004043961.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312444620|gb|ADQ80976.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 294

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 93/217 (42%), Gaps = 19/217 (8%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-- 197
           S    + +  + + G+ + K+    +  +         L+ ++ L  +R+  L DL K  
Sbjct: 71  SNLKASIVKLEKQNGELMDKNLSQNQQFSNSLKQKSAELAAKEKLLQERENALNDLKKVV 130

Query: 198 ----KISSTLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                I+  L+ ++ D ++      +  E     + +S+ D     +F   S+    + I
Sbjct: 131 ARQDSITKRLNNVLRDALLGFKSDELSVEIKNGKVYVSMSD---KLLFKSGSAAIESKGI 187

Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSE 306
             ++ + +VL   +   I + GHTD  P +     DNW LS+ RA S  ++L     ++ 
Sbjct: 188 DAIKVLADVLNKNAEIDILVEGHTDNIPIKTALYQDNWDLSVARAISIVRILTNEYRIAP 247

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            R++  SG      + ++      ++NRR +I++  +
Sbjct: 248 TRLTA-SGKGEFSPRASNATPEGRASNRRTEIILSPK 283


>gi|217978498|ref|YP_002362645.1| type IV / VI secretion system protein, DotU family [Methylocella
           silvestris BL2]
 gi|217503874|gb|ACK51283.1| type IV / VI secretion system protein, DotU family [Methylocella
           silvestris BL2]
          Length = 494

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++I   L+  +A    K V    T T I I + D     +F    +   P+   + ++I 
Sbjct: 352 QRIRLALAPEIA---AKKVDATQTATKIRIIVGDL---VLFPSGQANVKPQFEPIAKRIA 405

Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           + L      I+I GHTD       +    NW LS+ RA +   VL        RI  + G
Sbjct: 406 QTLEKEPGAITIVGHTDNVKLQATSPFDSNWTLSMARAKAVAAVLKPGLSEPARIE-VDG 464

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
            A  +    +D     + NRR++I++
Sbjct: 465 KADEQPIAPNDTPAGRAQNRRVEIML 490


>gi|46581013|ref|YP_011821.1| chemotaxis MotB protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601691|ref|YP_966091.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46450434|gb|AAS97081.1| chemotaxis MotB protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561920|gb|ABM27664.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311234697|gb|ADP87551.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 243

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A+K+   L          G+  +     + +      +  M+   S+   PE   VL  
Sbjct: 90  IAQKLRQMLMADATPQSASGISADDVGVQLRV-----NSDIMYAPGSAELAPEGAKVLDD 144

Query: 255 IGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKI 312
           +  +L      + +RGHTD+  P  +I   NW LS  RA +A + ++  G +   R+  I
Sbjct: 145 VIRILKEYNLYLVVRGHTDSGEPRNSIYPSNWELSGARAAAAVRYIITHGEIKPTRLRSI 204

Query: 313 SGFAHHRLKIASD--PMNSANRRID 335
           + +A  R    +      + NRR++
Sbjct: 205 A-YADTRPLEPNTSPDSRAKNRRVE 228



 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
          SWK+ YADF+T +MAFFL+MWI+N T  +TK+ +  YF+     +   S  +    N P 
Sbjct: 9  SWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFSSDAAKM--QSNNVSPVANNPF 66

Query: 92 RSSQNKID 99
            S +K+D
Sbjct: 67 VQSTDKLD 74


>gi|330880603|gb|EGH14752.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 262

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 42  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 96

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    +IP  +   +++K+  ++      I + G TD  P        N
Sbjct: 97  IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 155

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  R+ S  ++L   GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 156 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 210


>gi|325525952|gb|EGD03644.1| hypothetical protein B1M_15465 [Burkholderia sp. TJI49]
          Length = 360

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 185 AMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +KR+ ++A+        +   L  L+ D I  G +  +       S +  R   MF
Sbjct: 198 SADVQKRIAEIARMTPPPAPPVQLHLRQLLKDEIAAGTV--SVDEDARRSAVTFRGDAMF 255

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 256 LPGGASVQASMNPLIAKIAAEIAKVPGKVTIIGYTDNVPIRSRQFSSNQALSEERATQVM 315

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           Q+L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 316 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 356


>gi|297181726|gb|ADI17907.1| flagellar motor protein [uncultured Desulfobacterales bacterium
           HF0200_07G10]
          Length = 524

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 181 EKILAMKRKKRLQDL----AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           E + A++ ++RL++L    +  I S +SG+  +     +  +T+++ +++ +       +
Sbjct: 362 EALNAVEVQERLENLEMTKSDDIMSEISGMAEEA---DLDVDTSKSKVIVRV---PGASL 415

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294
           F  + +        VL  +   +       I ++GHTD  P        NW LS  RA +
Sbjct: 416 FKPAQATLQLSARPVLDAVINTVNKYPDYKIHVQGHTDDDPISTAMFPTNWELSAARATA 475

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +  +  G   +R++  +G+A     ++++     + NRR++ ++E  +
Sbjct: 476 VLRYFIDKGADPERMTA-TGYADIFPLVSNETPYGRAKNRRVEFVLEKEK 524



 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
                    W   ++D +T++M FF++M+ I + +  T K+
Sbjct: 308 HVCEEGAPLWMATFSDMVTLVMVFFILMYAIASKNVQTFKS 348


>gi|254561554|ref|YP_003068649.1| flagellar motor protein MotB [Methylobacterium extorquens DM4]
 gi|254268832|emb|CAX24793.1| flagellar motor protein MotB [Methylobacterium extorquens DM4]
          Length = 337

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 28/297 (9%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130
           F    +T    +    N       + + L       +      + +T    + +R     
Sbjct: 42  FLSQELTGRDAVLTRLNRQIADLTDLLALERSSRRAQEEAASGLRNTLTATEAERDRLRA 101

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184
           +   S + Q +         +E+G        +E      +++ ++       L+  +  
Sbjct: 102 LTDASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161

Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235
             + + R+ +L  +++  L+  V +           ++ V+   T   I+      ++  
Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQVIGSRTDVRIVGDRFVLQSEV 221

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286
           +F   S+   PE    L +I   +        A    V+ + GHTDA P ++     NW 
Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAREIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
           LS  RA +  Q L   G+   R+     F   +   +  S+   S NRRI++ + +R
Sbjct: 282 LSASRAIAVVQYLRSKGLPPQRLLA-GAFGEFQPLDSGTSEEAYSRNRRIEMKLTER 337


>gi|319790060|ref|YP_004151693.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
 gi|317114562|gb|ADU97052.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
          Length = 254

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271
           G     T   +LI +    N  +F ++S    PE    L +I +++ +      + + GH
Sbjct: 91  GYQIVVTENYVLIRLF---NKVLFKQNSLELTPEAKRALDQIAKIIKNLKGNYMVRVEGH 147

Query: 272 T----DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP 326
           T       P  NI    W LS+ RA +  + L+  GV   R+  + G+   R     ++P
Sbjct: 148 TSKDEPTVPMPNIQDS-WDLSIRRATTVVRYLISRGVDPSRLMAV-GYDATRPLYTWNNP 205

Query: 327 -MNSANRRIDILVE 339
            + + NRR++I ++
Sbjct: 206 ILQARNRRVEIYIQ 219



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + ++   +     + +W   ++D M++L+ FF++++ ++  D         YF       
Sbjct: 1  MARRKKEECKS--VPAWLTSFSDLMSLLLTFFILLYSMSTLDITKAMKFLSYFQGEKAQT 58

Query: 77 M 77
           
Sbjct: 59 F 59


>gi|326316328|ref|YP_004234000.1| type IV / VI secretion system protein, DotU family [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373164|gb|ADX45433.1| type IV / VI secretion system protein, DotU family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 450

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT--------PMFDKSSSIPLPETI 249
           K+ S ++       ++  L    R G+ + + DQ +          +F+ +S+   P  +
Sbjct: 271 KMPSVVAVAPPKPRLRQFLEPEIREGL-VEVNDQADRSTVTLRGDGLFEPASTEVKPRYV 329

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V+Q++   L   +  + + G++D  P R      NW LS +RA +   +L ++     R
Sbjct: 330 AVIQRVASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTITDGSR 389

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           +    G A       +      + NRR++I++ 
Sbjct: 390 VKA-EGRAESDPIAPNSTPEGRALNRRVEIVLL 421


>gi|307300434|ref|ZP_07580214.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|307318299|ref|ZP_07597734.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895981|gb|EFN26732.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306904600|gb|EFN35184.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 342

 Score =  106 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96
             T+LMA   ++ +         + I       N     +   ++ +  E++  +    +
Sbjct: 22  LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 81

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             +L      ++          ++      + +       S+     + S    S+    
Sbjct: 82  LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 141

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------AD 209
             +   L   I   E      L   +      + ++ DL ++++  L+  V       +D
Sbjct: 142 NQQIAALRSQIAAIEGA----LQASEAKDDASQAKIADLGRRLNVALAQRVQELNRYRSD 197

Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
              +     + R  I I       ++  +F    S   PE    + K+   L        
Sbjct: 198 FFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGSDLNPEGQTEMAKLATALLDLAKEIP 257

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           A    V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +GF  
Sbjct: 258 AEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGE 316

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
           ++     +   +   NRRI++ + ++
Sbjct: 317 YQPIAPGESQEARAQNRRIELKLTEK 342


>gi|15966529|ref|NP_386882.1| hypothetical protein SMc03992 [Sinorhizobium meliloti 1021]
 gi|15075800|emb|CAC47355.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021]
          Length = 344

 Score =  106 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96
             T+LMA   ++ +         + I       N     +   ++ +  E++  +    +
Sbjct: 24  LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 83

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             +L      ++          ++      + +       S+     + S    S+    
Sbjct: 84  LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 143

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------AD 209
             +   L   I   E      L   +      + ++ DL ++++  L+  V       +D
Sbjct: 144 NQQIAALRSQIAAIEGA----LQASEAKDDASQAKIADLGRRLNVALAQRVQELNRYRSD 199

Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
              +     + R  I I       ++  +F    S   PE    + K+   L        
Sbjct: 200 FFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGSDLNPEGQTEMAKLATALLDLAKEIP 259

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           A    V+ + GHTD      I R  DNW LS  RA S  + L+  GV  DR+   +GF  
Sbjct: 260 AEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGE 318

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
           ++     +   +   NRRI++ + ++
Sbjct: 319 YQPIAPGESQEARAQNRRIELKLTEK 344


>gi|4928701|gb|AAD33691.1|AF136403_3 RpmB [Pseudomonas aeruginosa]
          Length = 146

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +N+Q II+K+ V      ++ GSWKI +ADF T +MAFFLV+W++++   + KKAI  YF
Sbjct: 2   DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                   +AS  + D    P  +    ++  +      +S + +I      +       
Sbjct: 61  QDPIGFSESASPYVIDLGGTPTPAPDKTLNPQVQAQ--PDSNESRISPEQDHQVNADQAE 118

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDL 157
           N+      ++       L    +   +L
Sbjct: 119 NLAEQVERERLALLLQELQNKVDHMGEL 146


>gi|119900180|ref|YP_935393.1| hypothetical protein azo3891 [Azoarcus sp. BH72]
 gi|119672593|emb|CAL96507.1| putative outer membrane protein [Azoarcus sp. BH72]
          Length = 434

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 9/177 (5%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGI 224
           ++N+  +     +   K+       +   +  K+   L G +A  I +G V         
Sbjct: 257 ALNRHSDPAFAQILGLKVPPPAPLAQAAAVPAKVPDRLQGFLAPEIREGLVTVRDLPDRS 316

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RD 283
           ++ I   +   +F+ +S+   P  + ++ +IGE +A     + +RGH+D  P R+     
Sbjct: 317 VVQI---QGDGLFEPASATLAPRVLPLMARIGEAVARVKGSVLVRGHSDDRPIRSARFPS 373

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           NW LS  RA S   VL    +   RI    G A      ++D     + NRR++I+V
Sbjct: 374 NWHLSQARADSVAAVLAPQ-LGGARIE-TEGRAESEPVASNDTPEGRARNRRVEIIV 428


>gi|163851783|ref|YP_001639826.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|218530589|ref|YP_002421405.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240138946|ref|YP_002963421.1| flagellar motor protein MotB [Methylobacterium extorquens AM1]
 gi|163663388|gb|ABY30755.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
 gi|218522892|gb|ACK83477.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|240008918|gb|ACS40144.1| flagellar motor protein MotB [Methylobacterium extorquens AM1]
          Length = 337

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 28/297 (9%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130
           F    +T    +    N       + + L       +      + +T    + +R     
Sbjct: 42  FLSQELTGRDAVLTRLNRQIADLTDLLALERSSRRAQEEAASGLRNTLTATEAERDRLRA 101

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184
           +   S + Q +         +E+G        +E      +++ ++       L+  +  
Sbjct: 102 LTDASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161

Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235
             + + R+ +L  +++  L+  V +           ++ V+   T   I+      ++  
Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQVIGSRTDVRIVGDRFVLQSEV 221

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286
           +F   S+   PE    L +I   +        A    V+ + GHTDA P ++     NW 
Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAREIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
           LS  RA +  Q L   G+   R+     F   +   +  S+   S NRRI++ + +R
Sbjct: 282 LSASRAIAVVQYLRSKGLPPQRLLA-GAFGEFQPLDSGTSEEAYSRNRRIEMKLTER 337


>gi|126662906|ref|ZP_01733905.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38]
 gi|126626285|gb|EAZ96974.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38]
          Length = 321

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 117/312 (37%), Gaps = 23/312 (7%)

Query: 45  MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104
           +A  ++    +       + +E  +    K           ++N   ++ +N+++L  + 
Sbjct: 7   LACVVLSLTTSCVSKKIYQDLENKYADLKKE-----HNALSDENTTLKTDKNQLELDKNS 61

Query: 105 HITK-NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
             T+ + V  +           +   +    S +   +   ++L  +  K + L    + 
Sbjct: 62  LQTELDKVKSERDKLAADYAATKKNLDNLKASYAALEKDSNDALEANINKNRQLLAELEA 121

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLA-------KKISSTLSGLVADNIVKGVL 216
           ++     E   L  L K+   +  R   L+ +        KK+  TLS  +     KG+ 
Sbjct: 122 KQKALTAEQDRLNKLKKDLEASSTRLAELEKMMADKEAAMKKLKETLSKSLKAFEGKGLT 181

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
                  + +S+    N  +F+  S     E    ++ +GEVL  + E+ + I GHTD  
Sbjct: 182 VTEKDGKVYVSM---ENKLLFESGSWTVGAEGKKAVKALGEVLGQNPEISVLIEGHTDND 238

Query: 276 PFRN----IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
                      +NW LS  RA +   +L ++   + +    +G       + +D     +
Sbjct: 239 KITGTIGGGVENNWDLSTKRATAIVNILGENKAIDKKNLTAAGRGEFAPLMTNDSAEGKA 298

Query: 330 ANRRIDILVEDR 341
            NRRI+I++  +
Sbjct: 299 KNRRIEIILTPK 310


>gi|261365147|ref|ZP_05978030.1| OmpA family protein [Neisseria mucosa ATCC 25996]
 gi|288566399|gb|EFC87959.1| OmpA family protein [Neisseria mucosa ATCC 25996]
          Length = 421

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           ++ S+  + +     ++  K+ ++  K++      ++   L   +A  +   V  E  + 
Sbjct: 217 MQWSLGDDFDTASTKVNNLKLPSVTAKQQETQGTIRLRPLLENEIARKL---VSVEDFQD 273

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281
              ++I+      +F+  S+    +   VL ++ + L      I + G+TD  P +++  
Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLARVSQALDSVEGQIVVTGYTDDKPIQSLNF 330

Query: 282 RDNWRLSLDRAYSAYQVL---MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             NW LS  RA +  ++L   +K+G    RI +  G         +D     + NRR++I
Sbjct: 331 PSNWHLSQARADAVKEILLNYIKNG--GTRI-RSEGRGSTDPVAPNDTLENRAKNRRVEI 387

Query: 337 LV 338
            +
Sbjct: 388 TL 389


>gi|218886185|ref|YP_002435506.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757139|gb|ACL08038.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 241

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 11/201 (5%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
               K +L       + L  S+++    N      +  L        + +K    +A+K+
Sbjct: 32  PPETKQALAGYFSTERSLFDSSNVSPVANNPFVQGVDKLDTRDFKVSETEKSHYAIAQKL 91

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              +          G+  +     + +      +  MF   S+  +PE   VL ++ ++L
Sbjct: 92  KQMMMADAIPQNASGISADDVGVLLRV-----NSDVMFKAGSAELVPEGSRVLDEVIKIL 146

Query: 260 AHSTEVISIRGHTDASPFR--NIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFA 316
                 + +RGH+D+      +    NW LS  R A +   ++   G+   R+  I+ +A
Sbjct: 147 REYNLYLMVRGHSDSGEVAAGSPYPSNWELSGARAAAAVRYIIEHGGIKPTRLRGIA-YA 205

Query: 317 HHRLKIASDP--MNSANRRID 335
             R    +      S NRR++
Sbjct: 206 DTRPMEPNTTPESRSKNRRVE 226



 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
             GSWK+ YADF+T +MAFFL+MWI+N T  +TK+A+  YF+   ++L  +S       N
Sbjct: 3   GGGSWKVAYADFVTAMMAFFLLMWILNMTPPETKQALAGYFST-ERSLFDSSNVSPVANN 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           P  +              T+ S         Q      +  N   +S  
Sbjct: 62  PFVQGVDKLDTRDFKVSETEKSHYAIAQKLKQMMMADAIPQNASGISAD 110


>gi|298369093|ref|ZP_06980411.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283096|gb|EFI24583.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 417

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+ + I + ++  +       ++I+      +F+  S+    +   VL  +G+ L 
Sbjct: 252 RLRPLLENEIARKLVSVKDDPDRSTVTIL---GDGLFESGSTSIQDQYYPVLAAVGQALN 308

Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                + + G+TD +P +++    NW LS  RA +  ++L+    +     +  G     
Sbjct: 309 SVDGQVVVTGYTDNTPIQSLEYPSNWHLSQGRADAVKEILLSYMRNGANRIRSEGRGSTN 368

Query: 320 LKIASD-PMN-SANRRIDILV 338
               +D P N + NRR++I +
Sbjct: 369 PVAPNDSPENKAKNRRVEITL 389


>gi|209516113|ref|ZP_03264972.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209503397|gb|EEA03394.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 228

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             L   + ++          QD  K++S+ L  L    +   +       G+ I I    
Sbjct: 64  QTLETKTVQQSAPAPAGGAQQDARKQLSALLDALREKGL---ITVTDVPHGVEIGI---N 117

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
              +F+   +  LP++  VL +I +VL   ST  + + GHTD+ P        NW LS  
Sbjct: 118 AKILFNAGDARLLPDSFEVLNQIAQVLQKDSTGNVLVEGHTDSVPISTAKYASNWELSSA 177

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           RA +  + L++ G+   R++ I G A +   +
Sbjct: 178 RAGAVVRYLVERGIEPHRLAAI-GRADNFPLV 208



 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          W I YAD +T +M  FL ++++        +
Sbjct: 30 WLISYADLITTMMVLFLALYVLQLAKSKQLE 60


>gi|163787137|ref|ZP_02181584.1| outer membrane protein, OmpA family [Flavobacteriales bacterium
           ALC-1]
 gi|159877025|gb|EDP71082.1| outer membrane protein, OmpA family [Flavobacteriales bacterium
           ALC-1]
          Length = 319

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 17/223 (7%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              S     E+   S+  +S+K ++L    + ++     E+  L  L KE     KR   
Sbjct: 90  LKASYKALEENSSASIAANSKKNRELLAQLEAKEQALATESERLNTLKKELESRSKRVAE 149

Query: 192 LQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           L+++        + +   +S  + +   KG+  E     + +S+    N  +F   S   
Sbjct: 150 LENVIAAKDANMRALKDAISKALTNFEGKGLTVEQRDGKVYVSM---ENKLLFQSGSWSV 206

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-M 300
             E    +Q++G VLA + E+ + I GHTD  P++  A    NW LS  RA +   +L  
Sbjct: 207 GTEGRKAVQQLGSVLAENPEISVLIEGHTDNVPYKGNAQLSGNWDLSAKRATAIVNILRE 266

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
            S +S + ++  +G         +      + NRRI++++  +
Sbjct: 267 NSAISPENLTA-AGRGEFAPIATNSTAEGKAKNRRIEVVLTPK 308


>gi|302185388|ref|ZP_07262061.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
           642]
          Length = 296

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 11/177 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           SI   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SIKPAEPLVKESEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           W LS  R+ S  ++L    GV+  R++ + G+   +    +      + NRR+ +++
Sbjct: 189 WELSSARSASIVRMLAAMDGVNPARLASV-GYGEFQPIAPNTSTAGRAKNRRVVLVI 244



 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 102/307 (33%), Gaps = 43/307 (14%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q          
Sbjct: 3   RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQAL-------- 52

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
               G+F++       +   I +     ++    +  +  + Q        ++    + +
Sbjct: 53  ---VGVFNDTER----TMKPIPIGEQRPVSIKPAEPLVKESEQTDAGIGQASDDPLQTIA 105

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q        L +      D       E  I  E N  +   S + + + K    ++ +A 
Sbjct: 106 QDVRDAFGDLIK-----SDQMTVRGNELWIEIELNSSMLFGSGDAMPSDKAFTIIEKVAG 160

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            +    + +  +         T +               F  +  +    +  +++ +  
Sbjct: 161 IVKRFDNPIHVEGFTDDQPISTAQ---------------FPTNWELSSARSASIVRMLAA 205

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFA 316
           +   +   ++  G+ +  P              RA +   VL+    +   R    +G A
Sbjct: 206 MDGVNPARLASVGYGEFQPIAPNTST-----AGRAKNRRVVLVISRNLDVRRSLTSAGSA 260

Query: 317 HHRLKIA 323
           + +   A
Sbjct: 261 NVQPDAA 267


>gi|256425427|ref|YP_003126080.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040335|gb|ACU63879.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 285

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 96/235 (40%), Gaps = 14/235 (5%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
           D +    +    ++R  N      + ++ E  K + +    + KDL   ++ +    K+ 
Sbjct: 48  DCQRSLRDTASAFERSRN-----VSEERVEGLKQNNSTLLNQLKDLSVISNSQAESIKKS 102

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
              +               R   L   +   L G + +   K +  +  +  + I I D+
Sbjct: 103 LDNIGAKDAYIQDLQSAIARKDSLNMALVMNLKGAIGNLDDKDINIKVEKGVVYIDISDK 162

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSL 289
               +F+  S    P+   VL K+ +VL +  +    + GHTD++P++  +  DNW LS+
Sbjct: 163 M---LFESGSYDVTPKAKEVLGKVAKVLLNQPDIEFMVEGHTDSNPYKKGVLLDNWDLSV 219

Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            RA +  +VL     +    I+  +G + +    ++D     + NRR  I++  +
Sbjct: 220 KRATAVTRVLQNDYNIPPAHITA-AGRSEYLPIASNDTPEGRATNRRTRIVILPQ 273


>gi|256823714|ref|YP_003147677.1| type IV / VI secretion system protein, DotU family [Kangiella
           koreensis DSM 16069]
 gi|256797253|gb|ACV27909.1| type IV / VI secretion system protein, DotU family [Kangiella
           koreensis DSM 16069]
          Length = 439

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +  L  E  + +     + + AK +   LS  +   +++ V+ +     I+I+     + 
Sbjct: 263 IASLVPENKVDLASSDSVINYAKNLRQLLSTEIGRGLLQ-VVEDIDHVAIIIT-----SN 316

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293
            M+  +S+     +I +++KIG++   +   I + GH+D           NW LSL RA 
Sbjct: 317 QMYSSASAQLNENSIALIEKIGQIATTTPGHIQVVGHSDDQKIFTAKYHSNWELSLARAN 376

Query: 294 SAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           S  ++L ++     R++    G A  R+   +D   + NRR++IL+
Sbjct: 377 SVVRILNQNQNLAGRVTAEGRGAAEPRVANDTDTNRALNRRVEILL 422


>gi|209965120|ref|YP_002298035.1| hypothetical protein RC1_1826 [Rhodospirillum centenum SW]
 gi|209958586|gb|ACI99222.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW]
          Length = 344

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 98/272 (36%), Gaps = 22/272 (8%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           ER +   +   + +   +    L  G   Q              +     +    S    
Sbjct: 74  ERETSGGLRADVAQLTDRLRSTLARGEQLQADIAALAGERDALAAREAGLKGSVESERAL 133

Query: 151 SEKGKDLCKSTDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++ +   +  + +  ++ ++       L   +    +++ ++ DL  +++  L+  V +
Sbjct: 134 GDEARAQVELLNQQVAALREQLARVAAALEVSEGKGREQEAQIADLGNRLNVALADKVTE 193

Query: 210 ---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                      ++  L E     ++      ++  +F   S          L ++ E L 
Sbjct: 194 LARYRSEFFGRLREALGERDDVRVVGDRFVFQSEVLFGSGSVELGEAGKERLSRLAETLK 253

Query: 261 H--------STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
                       V+ + GHTD+ P R+     NW LS  RA +  + L+  G+  DR++ 
Sbjct: 254 EIAARVPPEVDWVLRVDGHTDSVPIRSARFPSNWELSTARATAVVKYLIDQGIPADRLAA 313

Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
            +GF  ++      S    + NRRI+I ++ R
Sbjct: 314 -AGFGQYQPLDPGTSAEALARNRRIEIKLDAR 344


>gi|262199634|ref|YP_003270843.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262082981|gb|ACY18950.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 291

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 15/209 (7%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             ++    +    R   +   + K     KS  +E +  L  L K K  A KR  + +DL
Sbjct: 76  TEEEVASMEAEKVRVEGELAAVVKDRARLKSSAEELSQALSELGKRKAEAEKRVAQFRDL 135

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             +  S +           +  + T   +++ +       +F    +    + IV + +I
Sbjct: 136 LNRFRSLID-------AGKLKVKITDGRMILEL---PTDVLFASGRADLSEDGIVSITQI 185

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           GEVLA   +    I GHTD  P        NW L+  RA +  + L ++G+    +S  S
Sbjct: 186 GEVLAAIPDRRYQIEGHTDNVPISTARYPSNWELAAARALTVLKTLREAGMQGSTLSAAS 245

Query: 314 GFAHHRLKIAS--DPMNSANRRIDILVED 340
            F   R   ++  D    ANRRI+I++  
Sbjct: 246 -FGEFRPVASNNSDAGRRANRRIEIVIVP 273


>gi|110635517|ref|YP_675725.1| hypothetical protein Meso_3188 [Mesorhizobium sp. BNC1]
 gi|110286501|gb|ABG64560.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 343

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 108/342 (31%), Gaps = 22/342 (6%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN-------ATDDDTKKAIEQYFNP 71
           +    + T +    +    A  +  +M    V  +         +  D+    +    N 
Sbjct: 5   RSRRRERTVDYWPGFVDALATLLLAIMFLLSVFVVAQYFLSREISGRDEALDRLNAQINE 64

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             + L        D ++       +  D   ++   +  +    GS     +        
Sbjct: 65  LTQLLALEKANFQDAEDQIATLRASLADAEAEQSRLQQILSSGAGSEAAANERIGELTGE 124

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                             + +      +   LE ++   E       +K   L  +    
Sbjct: 125 LDQERQISQRALSQVELLNQQISALRQQIAALEDALEASERRDRESNTKIADLGRRLNVA 184

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    ++++   S       ++ +L +     I+      ++  +F   ++   P     
Sbjct: 185 LAQRVQELNRYRSDFFGR--LREILSDREDIRIVGDRFVFQSEVLFASGATEINPNGQEE 242

Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK 301
           ++K+   +      I         + GHTD  P     R  DNW LS  RA +  + L++
Sbjct: 243 MRKLAGAILELQREIPPEINWVLRVDGHTDNIPLSGTGRFRDNWELSTARAVAVVKFLIE 302

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           SGV  +R+   +GF   +     +   +   NRRI++ + +R
Sbjct: 303 SGVPAERLVA-AGFGEFQPLDPENTTEARSRNRRIELKLTER 343


>gi|167583745|ref|ZP_02376133.1| hypothetical protein BuboB_00307 [Burkholderia ubonensis Bu]
          Length = 405

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I+  L   +A  +                I+  R   +F   ++  +   + VL ++ +
Sbjct: 254 RIAKFLEPEIAAGL-----VSVRDDADRSVIV-LRGDGLFQSGATSVIDRYLPVLARVAD 307

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA S   +L       +R++   G  
Sbjct: 308 ALNKVPGNVRVSGYTDDTPVHTARFASNWDLSRERAESVRSLLAARLDRPERLAA-QGRG 366

Query: 317 HHRLKIASDP--MNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 367 TLDPVAPNDTPANRARNRRVEITLL 391


>gi|126668189|ref|ZP_01739150.1| OmpA/MotB [Marinobacter sp. ELB17]
 gi|126627338|gb|EAZ97974.1| OmpA/MotB [Marinobacter sp. ELB17]
          Length = 465

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 106/296 (35%), Gaps = 15/296 (5%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
             + A+    N        A   I +      +++     L+        ++     + N
Sbjct: 157 QRRDALTSDLNAALAKQGDAQNQIDELTTQLTQATGQADTLTQQRDDLTATLTATQSAAN 216

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            ++   +          ++ +    ++     +    L  +T+  +S+ ++       L+
Sbjct: 217 AQQTDAQNRIAELEKQLAEANAALADARQEVRQHQSALASATEQRQSVAEQYQQAREQLA 276

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID------QRN 233
            ++  +    + +  L  +++   +        +       +  ++  + D         
Sbjct: 277 LQQARSQSATETINVLEARMAQEKAATDNLQ-SRLQSLSHEKESLVSRLEDGTTVIKLPE 335

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLS 288
           + +F+  S+         L  + + L    +  ISI+GH+D+        ++   NW LS
Sbjct: 336 SIVFNSGSARIGKAGQHTLTLLADALKSFPDHLISIQGHSDSRSIAPALQSLYPTNWELS 395

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342
             RA SA +VL ++G+   R+  + GFA  R  +          NRRI++L+   Q
Sbjct: 396 ASRAASAVRVLREAGIDPSRMQAV-GFADARPLVKEIDTVSRRKNRRIEVLLYPSQ 450


>gi|330812625|ref|YP_004357087.1| hypothetical protein PSEBR_a5553 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380733|gb|AEA72083.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 436

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+G +AD I    +       +  S++  R   +F   S+    +   ++ +I + +  
Sbjct: 294 RLAGFLADEIRANRI--AVEDAVDRSVVTIRGDELFASGSASIKDDFQPLMLRIADAVRK 351

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW LS  RA S  Q+L       +R S   G +    
Sbjct: 352 VKGQVLVTGHSDNRPIATLRFPSNWALSEARAQSVLQILSAKTGQPERFSA-EGRSDTEP 410

Query: 321 KIASDPM--NSANRRIDILVE 339
             ++      + NRR++I V 
Sbjct: 411 LASNATTEGRARNRRVEITVL 431


>gi|209522485|ref|ZP_03271080.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. H160]
 gi|209497081|gb|EDZ97341.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. H160]
          Length = 444

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           TLS  +A  I +G+      T    SI+      +F   S+   P    ++ +I E L  
Sbjct: 301 TLSTFLAPEIRQGL-VSVHETADR-SIVTITGDNLFASGSATLDPAYDALIGRIAEALKS 358

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               I + GHTD     +     NW LS  RA S   +L     +  R S   G      
Sbjct: 359 VPGKIVVTGHTDDQRLVSARFPSNWHLSQARAESVRAMLASLSGAPARFSA-EGRGDAEP 417

Query: 321 KIASDP--MNSANRRIDILVE 339
             +++     + NRR++I + 
Sbjct: 418 LASNETPAGRAKNRRVEITLL 438


>gi|108808116|ref|YP_652032.1| putative OmpA family protein [Yersinia pestis Antiqua]
 gi|108812385|ref|YP_648152.1| OmpA family protein [Yersinia pestis Nepal516]
 gi|145599315|ref|YP_001163391.1| OmpA family protein [Yersinia pestis Pestoides F]
 gi|162419405|ref|YP_001606412.1| SciP protein [Yersinia pestis Angola]
 gi|165925389|ref|ZP_02221221.1| SciP protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937006|ref|ZP_02225571.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008588|ref|ZP_02229486.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214237|ref|ZP_02240272.1| SciP protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399212|ref|ZP_02304736.1| SciP protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421156|ref|ZP_02312909.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424473|ref|ZP_02316226.1| SciP protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229838286|ref|ZP_04458445.1| putative OmpA family protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895433|ref|ZP_04510605.1| putative OmpA family protein [Yersinia pestis Pestoides A]
 gi|229898850|ref|ZP_04513995.1| putative OmpA family protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902751|ref|ZP_04517868.1| putative OmpA family protein [Yersinia pestis Nepal516]
 gi|270490077|ref|ZP_06207151.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           KIM D27]
 gi|108776033|gb|ABG18552.1| OmpA family protein [Yersinia pestis Nepal516]
 gi|108780029|gb|ABG14087.1| putative OmpA family protein [Yersinia pestis Antiqua]
 gi|145211011|gb|ABP40418.1| OmpA family protein [Yersinia pestis Pestoides F]
 gi|162352220|gb|ABX86168.1| SciP protein [Yersinia pestis Angola]
 gi|165914869|gb|EDR33481.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922996|gb|EDR40147.1| SciP protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992970|gb|EDR45271.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204593|gb|EDR49073.1| SciP protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960645|gb|EDR56666.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051716|gb|EDR63124.1| SciP protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056355|gb|EDR66124.1| SciP protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680198|gb|EEO76297.1| putative OmpA family protein [Yersinia pestis Nepal516]
 gi|229688398|gb|EEO80469.1| putative OmpA family protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694652|gb|EEO84699.1| putative OmpA family protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701588|gb|EEO89615.1| putative OmpA family protein [Yersinia pestis Pestoides A]
 gi|262366676|gb|ACY63233.1| OmpA family protein [Yersinia pestis D182038]
 gi|270338581|gb|EFA49358.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis
           KIM D27]
 gi|320014519|gb|ADV98090.1| putative OmpA family protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 278

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 140 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 196

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 197 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 255

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 256 PVSSNDDATGRSQNRRVEIFV 276


>gi|167840769|ref|ZP_02467453.1| hypothetical protein Bpse38_29109 [Burkholderia thailandensis
           MSMB43]
          Length = 405

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 253 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 306

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P  +     NW LS +RA +   ++       DRI+   G  
Sbjct: 307 ALNQVPGSVRVSGYTDDTPVHSARFASNWDLSRERAEAVRGLIAARLDRPDRIAA-EGRG 365

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 366 TLDPVAPNDSPANRARNRRVEITLM 390


>gi|320158759|ref|YP_004191137.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Vibrio
           vulnificus MO6-24/O]
 gi|319934071|gb|ADV88934.1| outer membrane protein ImpK/VasF OmpA/MotB domain [Vibrio
           vulnificus MO6-24/O]
          Length = 442

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 10/148 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A +I  +L+  +   ++K    +     + I+        +F+  S+  +     V+ K
Sbjct: 288 VANQIQRSLATEIEMGLLK---VDALPDRVRITFQSND---LFESGSAELVAHIFPVVSK 341

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L  +   I + GHTD +P   +    NW LSL RA +    L  +G    R+    
Sbjct: 342 VARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATALTDRLASAGKLSGRVIP-E 400

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339
           G    R  ++++     S NRR++I + 
Sbjct: 401 GMGEARPLVSNETAEGRSINRRVEIDLL 428


>gi|154252545|ref|YP_001413369.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156495|gb|ABS63712.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 338

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 94/250 (37%), Gaps = 21/250 (8%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
           D    +T +K +   L ++      ++            SE    +        ++ ++ 
Sbjct: 90  DSLAAATAEKDRLASLADDASGTRVAELEGKLAEEQKLSSEALSQVELLNQQISALRRQL 149

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-----I 226
                 L   ++   +++ ++ DL +++++ L+  V +       F      IL     I
Sbjct: 150 ATLEAALEAAELKDREQQVQIADLGRRLNAALAQKVQELAKYRSEFFGRLRAILGDRQDI 209

Query: 227 SIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEVISIRGHTDA 274
            I+      ++   F+  S+   P     L KI         E+      V+ + GHTDA
Sbjct: 210 EIVGDRFAMQSEIFFESGSADINPSGKEQLDKIATAVREIAAEIPDDIPWVLRVDGHTDA 269

Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSAN 331
           +P        NW LS  RA +    L++ GV ++R+   +GF  +           N  N
Sbjct: 270 NPIATAQFPSNWYLSSARAIAVVNYLVERGVPQNRLVA-AGFGQYHPLADGRGTAENRRN 328

Query: 332 RRIDILVEDR 341
           RRI+  + +R
Sbjct: 329 RRIEFKLTER 338


>gi|217978313|ref|YP_002362460.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
 gi|217503689|gb|ACK51098.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
          Length = 337

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 21/261 (8%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             DE  T  + +L     ++ +    ++        +   +         +     +   
Sbjct: 78  ESDEKATLLASNLDAAQKDKARLQGAIDAKAAGDGGAAAQQQLAAEKDASAAALAQIDIL 137

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NI 211
                ++ ++       LS  +    + + ++ DL  +++  L+  V +           
Sbjct: 138 NQQIAALRRQLAAIEDALSASEKSGAESQAKIADLGSRLNIALAQKVQELARYRSDFFGR 197

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHST 263
           ++ +L +     ++      ++  +F+ S ++        L K+   L            
Sbjct: 198 LRQILGDRPGVSVVGDRFIFQSEVLFESSQAVLDTAGRAELDKLASALIELEHEIPPDIP 257

Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            +I + GHTD  P ++     NW LS  RA +  Q L+  GVS  R++  +GF   +   
Sbjct: 258 WIIRVDGHTDKKPIQSSQYPSNWSLSAARAIAVVQYLVSKGVSPQRLAA-AGFGEFQPLD 316

Query: 323 A--SDPMNSANRRIDILVEDR 341
               D  N  NRRI++ + ++
Sbjct: 317 PGEGDDANRRNRRIELKITEK 337


>gi|27366879|ref|NP_762406.1| flagellar motor protein [Vibrio vulnificus CMCP6]
 gi|27358446|gb|AAO07396.1|AE016809_158 Flagellar motor protein [Vibrio vulnificus CMCP6]
          Length = 442

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           EKS            SKE             +A +I  +L+  +   ++K    +     
Sbjct: 257 EKSDQTFSQLMNLVPSKEIENQSADYISSLAVANQIQRSLATEIEMVLLK---VDALPDR 313

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR 282
           + I+        +F+  S+  +     V+ K+   L  +   I + GHTD +P   +   
Sbjct: 314 VRITFQSND---LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFP 370

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            NW LSL RA +    L  +G    R+    G    R  ++++     S NRR++I + 
Sbjct: 371 SNWHLSLARATALTDRLASAGKLSGRVIP-EGMGDARPLVSNETAEGRSINRRVEIDLL 428


>gi|254446248|ref|ZP_05059724.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium
           DG1235]
 gi|198260556|gb|EDY84864.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium
           DG1235]
          Length = 260

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 6/200 (3%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-----KRLQDLAKKI 199
            SL RD  K      +T ++ S+   E+      S     A  +      K L ++A++ 
Sbjct: 37  ESLKRDLAKYFQDPYNTPMDNSMGVIESPTEGQPSSANGQAKGKAEISDFKVLYEMAQEF 96

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L+   A+   K V  + T  G+ +++ D+   P F ++S+   P    V++ +  ++
Sbjct: 97  MRLLNIDSANPDQKPVDLDVTSDGLRVTLYDRDAHPFFVENSADYTPWGSFVIETLAWLV 156

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                ++ + G+              W LS DRA S  ++L + GV   +   ++   + 
Sbjct: 157 QRHNFMVRVDGYVSEGFEGDGWEYTAWELSSDRANSTRRLLERYGVRRGQFKSVTSHGNM 216

Query: 319 RLKIASDPMNSANRRIDILV 338
                  P   AN R+ I +
Sbjct: 217 EPLPFMHPTAEANDRVSISL 236



 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
             ++ G+WK+ YADF+T +MA F+V+W+  + D+  K+ + +YF       M  S G+ +
Sbjct: 5   GTHHGGAWKVAYADFVTAMMALFMVLWL-TSQDESLKRDLAKYFQDPYNTPMDNSMGVIE 63

Query: 86  EQNPPERSSQNKIDLSIDE 104
                + SS N       E
Sbjct: 64  SPTEGQPSSANGQAKGKAE 82


>gi|332716479|ref|YP_004443945.1| Flagellar motor protein [Agrobacterium sp. H13-3]
 gi|325063164|gb|ADY66854.1| Flagellar motor protein [Agrobacterium sp. H13-3]
          Length = 343

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 23/323 (7%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
             T+LMA   ++ +         + I    +     L +    + +     + S Q+  D
Sbjct: 23  LSTLLMAIMFLLTVFVLAQFVLSREISGK-DEVLTRLNSQIAELTELLAMEKGSKQDIED 81

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
                  T  + + +              N          +    +    +S     +  
Sbjct: 82  ALASLQSTLAASESERSRLQSLLDAGSGNNASANARIGSLTGELDDQRQANSRASAQIEL 141

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212
                 ++  +       L   +      + ++ DL ++++  L+  V       +D   
Sbjct: 142 LNQQIAALRAQIASVEAALQASEAKDTSSQVKIADLGRRLNVALAQRVQELNRYRSDFFG 201

Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---- 266
           +     + R  I I       ++  +F    +   P+    ++K+   L    + I    
Sbjct: 202 RLREILSDRENIRIVGDRFVFQSEVLFPSGGNDLNPQGQAEMEKLAAALIDLAKEIPTEI 261

Query: 267 ----SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                + GHTD        R  DNW LS  RA S  + L+  GV  +R+   +GF  ++ 
Sbjct: 262 NWVLRVDGHTDNVQLSGSGRFRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQP 320

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
               D   +   NRRI++ + +R
Sbjct: 321 IAEGDTPEARQQNRRIELKLTER 343


>gi|89891334|ref|ZP_01202840.1| chemotaxis motB protein, OmpA family [Flavobacteria bacterium
           BBFL7]
 gi|89516365|gb|EAS19026.1| chemotaxis motB protein, OmpA family [Flavobacteria bacterium
           BBFL7]
          Length = 289

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 16/221 (7%)

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
             +   +    ++ +    E    L  +     +++K++   L    +       + + L
Sbjct: 51  EKAAQAKLSALQSEIQNLRESNASLLNNVGDLATLSKKDAEILETSLERIREKDLQIRSL 110

Query: 193 QDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            D   K       + +++   + +   + +     +  + ISI D     +F   S    
Sbjct: 111 NDALTKKDSVTIALVTSIKSSLGNVNDEDINVNVEKGVVFISIND---KLLFASGSDQIN 167

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKS 302
                VL K+G +L       + I GHTD+ P  +   +DNW LS  RA +  + L  K 
Sbjct: 168 SNAYTVLGKVGTILKDKANMEVMIEGHTDSQPIASANFKDNWDLSTARAAAITRYLQEKE 227

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            +   R++  +G +++    ++D     + NRR  I++  +
Sbjct: 228 QIDPARMTA-AGRSYYVPIASNDTAEGRAKNRRTRIIILPK 267


>gi|162453404|ref|YP_001615771.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161163986|emb|CAN95291.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 263

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 12/233 (5%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G + Q+ + Q  + N     + ++    +  L    ++ ++L K    + +   + +  L
Sbjct: 21  GHSEQEWKSQLDKYNQLQNRSQKREAELEKELADAKQRVEELEKKLADQGADISKMSSTL 80

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
               K       R K+L+ +  +    L   + + +  G+  +  R  ++IS+       
Sbjct: 81  EDREKALAEYKARAKQLEAIQARFD-LLRKKLEELVKLGLEVQVRRNRMVISL---PGDV 136

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNI-ARDNWRLSLD 290
           +FD        +   +L+KI +V+            + GHTD+ P+++   +DNW LSL 
Sbjct: 137 LFDSGKDTLSKDGQQILKKISDVIRGDKSLVDRDYQVAGHTDSQPYKSGPFQDNWGLSLM 196

Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           RA +    L+ K G    R    +GFA      +++       NRR D++V  
Sbjct: 197 RARAVLLFLIGKEGQLPTRHWSAAGFADTDPIASNNTPAGKQKNRRCDLIVLP 249


>gi|158422120|ref|YP_001523412.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
 gi|158329009|dbj|BAF86494.1| flagellar motor protein [Azorhizobium caulinodans ORS 571]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 33/270 (12%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           E  T  S D ++ +     Q    E +    +          S      +  D+ K    
Sbjct: 71  ERATGQSQDSELAALRASLQATEAERDRLKAAAGPAPTGPDPSREAALAREVDMQKDVAS 130

Query: 164 EK------------SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-- 209
                         ++ ++       L+  +    + + ++ DL K+++  L+  V +  
Sbjct: 131 RALAQIELLNQQIAALRRQMAALEEALNVSEKRDQESQTKIADLGKRLNVALAQRVQELS 190

Query: 210 ---NIVKGVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              +   G L +       I I+      ++   FD+ S+ P PE +  L K+   +   
Sbjct: 191 RFRSEFFGRLRDILGNRPDIRIVGDRFVFQSEVFFDRGSATPRPEALAELDKLASAILEL 250

Query: 263 TEVI--------SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              I         I GHTD+ P        NW LS  RA +  Q L+  GV    +   +
Sbjct: 251 ERQIPPDINWALRIDGHTDSRPISTPQFPSNWELSAARAIAVAQYLISKGVQPRHLIA-A 309

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           GF  ++      SD   + NRRI++ + +R
Sbjct: 310 GFGEYQPIDTGTSDESMARNRRIELKLTER 339


>gi|78063205|ref|YP_373113.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77971090|gb|ABB12469.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 226

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN 279
             G+ I I       +F+   +  LP++  VL +I + L+ H+T  I + GHTD+ P  N
Sbjct: 107 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSDHATGDILVEGHTDSVPIAN 163

Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
                NW LS  RA S  + L + GV+  R++ I G A  +  +
Sbjct: 164 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLV 206



 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 10/138 (7%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKN 75
           +   +      G W I YAD +T LM  FL ++++        D   + + ++       
Sbjct: 13  RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLAKYNALDARYQTLARHAESAASA 72

Query: 76  LMTASKGIFDEQNPP------ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
              A+  +  E  PP         S  +I L    H  +  +D KI       +     +
Sbjct: 73  SAAATAAVTPEHAPPWLALLDSLKSNGRISLVKAPHGVEIGIDAKILFNVGDARLLPDSS 132

Query: 130 NIFYLSNSQQSEHCKNSL 147
            +        S+H    +
Sbjct: 133 PVLNQIAQALSDHATGDI 150


>gi|221209714|ref|ZP_03582695.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221170402|gb|EEE02868.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 428

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +K++ D+A+            L  L+ D I  G +  +       S++  R   MF
Sbjct: 266 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 323

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 324 RPGGASVQVSMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 383

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           Q+L  +GV  +R+  + G           +    + NRR++I
Sbjct: 384 QMLQAAGVQANRLEAV-GKGDANPVGDNRTAQGRAQNRRVEI 424


>gi|78062443|ref|YP_372351.1| hypothetical protein Bcep18194_B1593 [Burkholderia sp. 383]
 gi|77970328|gb|ABB11707.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 440

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 10/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I+  L   +A  +                I+  R   +F   S+  +   + VL ++ + 
Sbjct: 287 IAKFLEPEIAAGL-----VSVRDDADRSVIV-LRGDGLFKSGSTSVIDRYVPVLARVADA 340

Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L      + + G+TD +P        NW LS +RA +   ++       +R++   G   
Sbjct: 341 LNKVPGNVRVTGYTDDTPVHTARFASNWDLSRERAEAVRGMIAARLDHPERLAA-EGRGT 399

Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343
                 +D     + NRR++I +    G
Sbjct: 400 LDPVAPNDSPANRALNRRVEITLLPAPG 427


>gi|225012825|ref|ZP_03703259.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003099|gb|EEG41075.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 283

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 16/213 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198
                         +DL  +     +++++    L    +       R +R+QD   K  
Sbjct: 59  ATLTEQNQFLKANNQDLINNIGNLTTLSQKGAENLEMSLESMKEKDIRIQRMQDAVTKKD 118

Query: 199 -----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                + ++L G++ +     +     +  + +SI D     +F   S         VL 
Sbjct: 119 SVTLALVTSLKGVLGNMSDDDIEINVEKGVVYVSISD---KLLFRSGSYTVTSRAKEVLG 175

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           K+  V+ +  E    + GHTD  P ++    DNW LS+ RA +  ++L K  GV+  R++
Sbjct: 176 KVATVVNNKPELEFMVEGHTDNVPIKSDGIVDNWDLSVKRATAVVRILEKDFGVAPARMT 235

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             +G + +     +D     + NRR  I+V  +
Sbjct: 236 A-AGRSFYIPVADNDTAANRAKNRRTRIVVLPK 267


>gi|83718191|ref|YP_438455.1| hypothetical protein BTH_II0253 [Burkholderia thailandensis E264]
 gi|167614920|ref|ZP_02383555.1| hypothetical protein BthaB_01465 [Burkholderia thailandensis Bt4]
 gi|257141504|ref|ZP_05589766.1| hypothetical protein BthaA_20174 [Burkholderia thailandensis E264]
 gi|83652016|gb|ABC36080.1| ompA family protein [Burkholderia thailandensis E264]
          Length = 437

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           L           I+  R   +F   S+  +   + VL +I + L      + + G+TD +
Sbjct: 298 LVSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRIADALNQVPGSVRVSGYTDDT 356

Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332
           P        NW LS +RA +   ++       DRI+   G         +D     + NR
Sbjct: 357 PVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRGTLDPVAPNDSPANRARNR 415

Query: 333 RIDILVE 339
           R++I + 
Sbjct: 416 RVEITLM 422


>gi|291519587|emb|CBK74808.1| Flagellar motor protein [Butyrivibrio fibrisolvens 16/4]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK   ++ P    +W   ++D M +L+ FF++++ +++TD +  + +           
Sbjct: 1   MAKKQKQEEAPAGSPAWMATFSDLMNLLLCFFVLLFSMSSTDTEKFQEVIASIQSSFSIF 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            +    I + Q      SQ    L + +   K+  D       +K+     +N      +
Sbjct: 61  SSGGTSIGEGQMISSGISQ----LEMFDDYFKSVHD-GDDQKYEKEGATDTQNEGEQSED 115

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             Q+E  +N     SE G+D+  +   E       +                    +++A
Sbjct: 116 GNQTEEGQNPSDVSSESGEDISVAEAKEALEEAGASES------------------ENIA 157

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++I   L+      +   V  +     ++I+I       +F+   +I   + + ++  + 
Sbjct: 158 EEIEEKLALY---GLQDQVEVDFNANYVMITI---NGALLFNSGKAILTEDALEIVDNLS 211

Query: 257 EVLAH-STEVISIRGHTDASPFRNIARDNWR-LSLDRAYSAY-QVLMKSGVSEDRISKIS 313
            +LA  +  +I I GHTD  P  +   +N   LS+ RA     ++  K+ ++   I   +
Sbjct: 212 NILASYNQNIIEIEGHTDNVPMSSGTYENNDVLSMYRALYVADRIREKTNLNPAYIKS-A 270

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVED 340
           G   +     +      + NRR++I + +
Sbjct: 271 GRGEYVPIADNSTAEGRARNRRVEIKIFN 299


>gi|46202032|ref|ZP_00053894.2| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 274

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 21/221 (9%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             ++            E    L        ++ +E       L   +    ++K ++ DL
Sbjct: 50  KDEKEAELAAEKKISDEGRAQLALLNQQIAAMREELARVTAALDASEARDKEQKAQIADL 109

Query: 196 AKKISSTLSGLVADNIV-------KGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLP 246
            K+++  L+G V +          +         GI I       ++  +F   S+   P
Sbjct: 110 GKRLNVALAGKVEELQKYRSEFFGRLRKVLGDHPGIRIEGDRFIFQSELLFATGSADLGP 169

Query: 247 ETIVVLQKIGEVLAH--------STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQ 297
           E +  + ++   L             V+ I GHTD  P  +     NW LS  RA +  +
Sbjct: 170 EGVEQVGRLAATLKDIAKTMPKGVNWVLRIDGHTDRRPMVSGRYPSNWELSTARAITVLR 229

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            L  +GV +DR++  +GF   +    +D     + NRRI+I
Sbjct: 230 TLAANGVPKDRLAA-AGFGEFQPVDPADNEAAYAKNRRIEI 269


>gi|126665323|ref|ZP_01736305.1| hypothetical protein MELB17_22060 [Marinobacter sp. ELB17]
 gi|126629951|gb|EBA00567.1| hypothetical protein MELB17_22060 [Marinobacter sp. ELB17]
          Length = 348

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 117/332 (35%), Gaps = 28/332 (8%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL---MTASKGIFDEQNPPERS 93
           Y D ++ L+   + M ++               N     L   ++    +   +     +
Sbjct: 18  YVDALSALLMLVIFMLLVYVVSQLFLSQTLSDRNSELARLNLRLSELSQLLGLEQGTTAA 77

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE- 152
            + ++ +  +      + +  +    +  + Q +       + ++        L    E 
Sbjct: 78  LEQQMLIVQNSFSDSLAENENLQQQLEASRDQLMRQTADAEARAENLADMNQELGNKDEL 137

Query: 153 ---KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
              +   + + ++   ++  +       L  +K + + ++  L+ +++++++ L+  +  
Sbjct: 138 SNSQQTMIMRLSNQIAALQNQLRQITAALRLQKEMTVDQEDELKSVSRRLNTMLAERINQ 197

Query: 210 NIVKGVLFETTRTGIL-----ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVL- 259
                  F +    IL     I I+  R    +  +F   S++   E    L K+  VL 
Sbjct: 198 LEQYQSEFFSRLRNILAANENIRIVGDRFLLPSELLFASGSALLGAEGKRELDKLAGVLL 257

Query: 260 -------AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
                  A    ++ I GHTD  P        NW LS  RA +  + L    V ++R+  
Sbjct: 258 DVVETIPADLEWILRIDGHTDRIPINTPQFPSNWELSTARAVAVVRYLADQSVPQNRMVA 317

Query: 312 ISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
            +GF             +   NRRI+I + DR
Sbjct: 318 -AGFGEFFPVADGTTPEALQENRRIEIKLTDR 348


>gi|325287672|ref|YP_004263462.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324323126|gb|ADY30591.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 285

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           T   +     + N F  +N+Q       +LT  S KG +     +LEKS+   +   L  
Sbjct: 56  TADARLRTLEDQNDFLKANNQVLVDNMGNLTDLSAKGAE-----NLEKSLESLKEKDLTI 110

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
                 +  +    L  L + +   L  L  ++    +     +  + +SI D     +F
Sbjct: 111 RKLNDAITRRDSVNL-SLVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 162

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
              S         VL K+ +V+ +  +    + GHTDA P+R  +  DNW LS+ RA + 
Sbjct: 163 SSGSYNVATRAKEVLGKVAQVVNNKPDFEFMVEGHTDAVPYRKGVLLDNWDLSVKRATAV 222

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            ++L  + GV   R++  +G + +    ++D   + NRR  I+V  +
Sbjct: 223 VRILQNEYGVDPKRMTA-AGRSQYIPVSSTD--KARNRRTRIVVLPK 266


>gi|153807056|ref|ZP_01959724.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185]
 gi|149130176|gb|EDM21386.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185]
          Length = 278

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            + +Q S   KN +   ++ G  + +   +      E+      L+++K    +R++ + 
Sbjct: 47  NTGNQMSVQIKNLMRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLNQKKNELNERERTIN 106

Query: 194 DLAKKISST------LSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +L + I++       L   V D ++      +        + +++ D     +F   S+ 
Sbjct: 107 ELQQMINAQNEKVRKLLSSVKDALLGFSSDELTVREKDGKVYVAMSD---KLLFQSGSAR 163

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
                   L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K
Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223

Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  V+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 224 NYNVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265


>gi|83592409|ref|YP_426161.1| hypothetical protein Rru_A1073 [Rhodospirillum rubrum ATCC 11170]
 gi|83575323|gb|ABC21874.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 375

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 101/295 (34%), Gaps = 16/295 (5%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
              +            + +  + +  +    +S+ +  L+    + ++   LK      +
Sbjct: 82  LSQLSGQLRDANARAESLAAQVREVDDTKFENSRLRDQLAGVAKLEQDVAALKALRAELE 141

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK--GKDLCKSTDLEKSINKEENYFLPPLS 179
            +  RL   +        +E   +   R         L +      +I +  +      +
Sbjct: 142 AEVARLGGQLGEKEGQIAAERTLSEEARAHAALLNAQLEQLQAQLGAIQQALDASEARSA 201

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMF 237
           ++K++      RL     +    L    ++   +       R  + I       ++  +F
Sbjct: 202 EQKVVIADLGTRLNAALAEKVQELQRYRSEFFGRLREVLGAREDVRIVGDRFVFQSEVLF 261

Query: 238 DKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIAR-DNWRLS 288
              SS   P     L  +   L             ++ + GHTD  P    A   NW+LS
Sbjct: 262 PSGSSQLQPAGQDTLASLATTLMAIAARIPGDVDWILRVDGHTDRRPINTAAFQSNWQLS 321

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
             RA S    L++ GV  +R++  +GF  ++      SD   + NRRI++ ++ R
Sbjct: 322 AARAISVVNFLIERGVPPERLAA-AGFGEYQPIDPGQSDEALARNRRIELKLDQR 375


>gi|261417399|ref|YP_003251082.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373855|gb|ACX76600.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327366|gb|ADL26567.1| putative chemotaxis MotB protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 216

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           ++   +      L++ +   +  +++++ +A + ++ LS  +  +I  G++      G  
Sbjct: 32  AMATLKEQKAEDLTRTEEEVLSCQEQMRKIAAERNALLSKSLQTSIEAGLI--ALEDG-K 88

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIA- 281
           I I   + + +F  + +    E   V++ I + L  +   T+VI + G TD  PF     
Sbjct: 89  IQI---QASFLFPINGANLTKEGEGVIRGISKGLLEALDSTDVIMVSGFTDDIPFSGSTS 145

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
             NW LS +RA +  ++L+K G   DR+   +GF  HR K  +D       NRR++I V 
Sbjct: 146 YTNWNLSTERAVNVVKMLVKMGFPPDRLFA-AGFGEHRPKYPNDSEEHRRLNRRVEIGVT 204

Query: 340 DRQ 342
             Q
Sbjct: 205 PLQ 207


>gi|260061425|ref|YP_003194505.1| Thrombospondin type 3 repeat:OmpA/MotB [Robiginitalea biformata
           HTCC2501]
 gi|88785557|gb|EAR16726.1| Thrombospondin type 3 repeat:OmpA/MotB [Robiginitalea biformata
           HTCC2501]
          Length = 446

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 94/270 (34%), Gaps = 28/270 (10%)

Query: 78  TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131
           T   GI+D+ +  PE +     +   D         K++   + GS           + +
Sbjct: 189 TDGDGIYDKDDACPEVAGLEAFNGCPDSDGDGIEDAKDACPNEAGSMEMNGCPDADGDGV 248

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189
               ++  +E    +L+   +   D     D E        EN   P    +    + + 
Sbjct: 249 ADKDDACPNEAGLPALSGCPDADGDGVADKDDECPSEAGPAENNGCPWPDTDGDGVLDKD 308

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
               D A        G VA+N       E T   +   + +   T +FD   +   PE+ 
Sbjct: 309 DECPDTA--------GTVANNGCP----EVTEE-VQAQLNEYARTILFDTGKASLKPEST 355

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V   I  +L        ++ GHTD+         N +LS +RA S    L+  G+   R
Sbjct: 356 RVFVDIIRILDQYPNSRFTVEGHTDSV---GSNSLNQKLSEERANSVRDFLINEGIDASR 412

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           +  + G+   R    ++       NRR++I
Sbjct: 413 LEAV-GYGEERPIATNNTRAGRTQNRRVEI 441


>gi|149922653|ref|ZP_01911080.1| flagellar motor protein [Plesiocystis pacifica SIR-1]
 gi|149816450|gb|EDM75949.1| flagellar motor protein [Plesiocystis pacifica SIR-1]
          Length = 279

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 13/215 (6%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE-NYFLPPLSKEKILAMKRKKRLQDLA 196
           Q++E     L  +    +D  ++ ++     + E    L   S       + ++ L +L 
Sbjct: 46  QEAETAAQLLGANIADLEDQLRTAEVRAQEAETELAGVLKDKSNLSASVEEMQQALAELQ 105

Query: 197 K-KISSTLSGLVADNIVKGVLFETTRTGILISIID------QRNTPMFDKSSSIPLPETI 249
           + + ++ +   +  +++           +   I+D       R   +FD   +    E  
Sbjct: 106 RLRAAAEVRAGMYRSVLNKFKTLIDNGTLKAKIVDGRMVLELRTDILFDSGKAKLSDEGA 165

Query: 250 VVLQKIGEVLAHS-TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307
             + ++G++LA        + GHTD  P +      NW L+  RA +    ++ +G+   
Sbjct: 166 ATVGEVGKLLAELSDRRFQVEGHTDNVPIKTKAFPSNWELASARAITVVNEMIAAGMPAT 225

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            IS  + +A  R     A+D   + NRRI+I++  
Sbjct: 226 NISAAA-YADTRPAASNATDEGRAQNRRIEIVLIP 259


>gi|15606305|ref|NP_213684.1| flagellar motor protein MotB [Aquifex aeolicus VF5]
 gi|2983507|gb|AAC07084.1| flagellar motor protein MotB [Aquifex aeolicus VF5]
          Length = 235

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFE--TTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K L+ +A++I + +S        +G+  +   T   + I +   +    F       + E
Sbjct: 88  KELKKVAQEIKAEMS-------KRGIWSDYALTGECLRIRVNTDK---FFPPGEDTLMKE 137

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVS 305
              ++  +   L      + I GHTD  P        NW LS+ RA S  +V  K  G  
Sbjct: 138 AKGLILGLCYKLKPYALPVDIEGHTDNRPISTPRFPSNWELSMARAISVIEVFEKECGYP 197

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            D++S + G+A  +   ++D       NRR++  V+
Sbjct: 198 SDKLSAL-GYADTKPIASNDTPQGRQKNRRVEFCVK 232



 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKNLMT 78
          K   +       +W   + D M++L+ FF++++ ++    +   + ++   + FG   + 
Sbjct: 4  KKKEECPKP--PAWLTSFGDLMSLLLTFFILLYSMSIISLEKFYQVLKGIVSAFGAQSVV 61

Query: 79 ASKGIFDEQNPPERSSQN 96
            +G   E    E   +N
Sbjct: 62 FEEGTMPEGRRIEIPMEN 79


>gi|239813231|ref|YP_002942141.1| hypothetical protein Vapar_0212 [Variovorax paradoxus S110]
 gi|239799808|gb|ACS16875.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus S110]
          Length = 460

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 92/295 (31%), Gaps = 21/295 (7%)

Query: 48  FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107
           F  +      +      + +               + D       + + ++   I +   
Sbjct: 167 FFQLLSRLVQNPQQHLQLIELIYFCLAMGFEGRFRVIDNGRTQLETLKQRLLQIIRQTRG 226

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           + +V L     +     +R  N +   +    +      +            +   + + 
Sbjct: 227 EIAVPLSPHWQDASAPVRRTRNWVPLWAVGAVAAVLLVLVFGVL----TFSLAGRSDGAF 282

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
                  LP   +   +A   + RLQ         L   + D ++              S
Sbjct: 283 AAVNAVRLPQTQRAVAVAPAPQPRLQRF-------LEPEIRDGLL-----TVRDEADR-S 329

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWR 286
           ++  R   +F   S   L     VL ++ + L      + + G +D  P R++    NW+
Sbjct: 330 VVVLRGDGLFASGSDRVLDRYAPVLARVADALNSVEGNVLVSGFSDDQPIRSVRFPSNWQ 389

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           LS  RA +  +++       +R+ +  G       + +D     + NRR+++ + 
Sbjct: 390 LSQARADAVKKMIATRVTRPERL-RAEGRGDADPLVPNDSPANRARNRRVEVTLL 443


>gi|53804092|ref|YP_114257.1| OmpA domain-containing protein [Methylococcus capsulatus str. Bath]
 gi|53757853|gb|AAU92144.1| OmpA domain protein [Methylococcus capsulatus str. Bath]
          Length = 179

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 14/148 (9%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            ++++  L   V       V  +  R  + +++ D+    +F +       E    + KI
Sbjct: 31  ERQLNEQLRTEVE---ADEVKIQQLRDRLRVTMEDE---LLFPEGGYQISKEGKASIDKI 84

Query: 256 GEVLAHSTE-VISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
              L  +T   I + GHTD  P      +    NW LS  RA    + L   G+   R++
Sbjct: 85  IPTLQSATNHRIEVEGHTDNVPIGKHLAHRFSSNWELSAGRACEVVKYLQSKGIDPARMT 144

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDI 336
             +G   ++   ++      + NRRIDI
Sbjct: 145 A-AGHGEYQPVASNATAEGKAQNRRIDI 171


>gi|167576750|ref|ZP_02369624.1| hypothetical protein BthaT_01360 [Burkholderia thailandensis TXDOH]
          Length = 437

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           L           I+  R   +F   S+  +   + VL +I + L      + + G+TD +
Sbjct: 298 LVSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRIADALNRVPGSVRVSGYTDDT 356

Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332
           P        NW LS +RA +   ++       DRI+   G         +D     + NR
Sbjct: 357 PVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRGTLDPVAPNDSPANRARNR 415

Query: 333 RIDILVE 339
           R++I + 
Sbjct: 416 RVEITLM 422


>gi|88811406|ref|ZP_01126661.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
 gi|88791295|gb|EAR22407.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
          Length = 439

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 90/251 (35%), Gaps = 21/251 (8%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
              +     +  Q++ +          ++ E   +     +     L       +++ ++
Sbjct: 190 AQERTQLAQKTLQHRDIRIQDLVAQIEERQEALAHQHRLSAAADAKLGALRRQLQALQEQ 249

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTR 221
            +     L   K   + +K +L+ L ++++  L   V +           ++ VL +   
Sbjct: 250 ISALAAALHSSKQTVVSQKVQLRRLGEQLNVALVKKVKELSYYRSEFFGRLRQVLGDVPE 309

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTD 273
             ++      ++   F   S+         L ++  VL   +  I         + GHTD
Sbjct: 310 IRVVGDRFMFQSELFFPSGSAQIAAPGKDKLDRLATVLEEVSRRIPGDVDWVLQVDGHTD 369

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330
             P        NW LS  RA S    L+  GV  +R++  +G+  +    + D P   + 
Sbjct: 370 RRPIHTPRFPSNWELSTARALSIVHYLVTRGVPPNRLAA-AGYGQYDPIDSRDSPQALAR 428

Query: 331 NRRIDILVEDR 341
           NRRI++ +  R
Sbjct: 429 NRRIELRLTSR 439


>gi|51596980|ref|YP_071171.1| OmpA/MotB family protein [Yersinia pseudotuberculosis IP 32953]
 gi|170023725|ref|YP_001720230.1| type VI secretion system OmpA/MotB family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186896063|ref|YP_001873175.1| type VI secretion system OmpA/MotB family protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590262|emb|CAH21899.1| possible OmpA/MotB family protein [Yersinia pseudotuberculosis IP
           32953]
 gi|169750259|gb|ACA67777.1| type VI secretion system OmpA/MotB family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186699089|gb|ACC89718.1| type VI secretion system OmpA/MotB family protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 320 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 376

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 377 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 435

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 436 PVSSNDDATGRSQNRRVEIFV 456


>gi|153949967|ref|YP_001400351.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152961462|gb|ABS48923.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
          Length = 458

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 320 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 376

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 377 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 435

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 436 PVSSNDDATGRSQNRRVEIFV 456


>gi|328542518|ref|YP_004302627.1| OmpA family protein [polymorphum gilvum SL003B-26A1]
 gi|326412264|gb|ADZ69327.1| OmpA family protein [Polymorphum gilvum SL003B-26A1]
          Length = 343

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 26/344 (7%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +        +    +    A  + V++    +  +            +   N     +  
Sbjct: 5   RVRRRPQGTDYWPGFVDAMATLLLVIIFLLSIFMLAQFFLSQQLSGRDTVLNRLNAQISE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+            L        +  D  +G  + +                 
Sbjct: 65  LTELLALERASSRELEDTITTLQASLGEATSERDRLVGLLDDRSGAAAAAGGRAAALEGM 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    ++      +   L + +           +KE+    + + ++  L ++
Sbjct: 125 LDEEKQISQRALAQVELLNQQIAALRRQLAAANAALEASEAKEQ----ESQAKIASLGRR 180

Query: 199 ISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +++ L   V +           ++ +L + +   ++      ++  +F   S    P   
Sbjct: 181 LNAALVQRVQELSRYRSDFFGRLREILSQRSDIRVVGDRFVFQSEVLFPSGSDEINPAGT 240

Query: 250 VVLQKIGEVL----AHSTEVIS----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
           V L K+ E +    A   E I+    + GHTD+ P     R  +NW LS  RA S  + L
Sbjct: 241 VELGKLAEAILELEAQIPEEINWVLRVDGHTDSRPLSGTGRLRNNWELSSARAISVVRYL 300

Query: 300 MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341
           +  GV   R+   +GF   +     D P   + NRRI++ + +R
Sbjct: 301 IDRGVDPKRLVA-AGFGEFQPLEDGDSPEALARNRRIELKLTER 343


>gi|77918775|ref|YP_356590.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380]
 gi|77544858|gb|ABA88420.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380]
          Length = 247

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            D   ++ + +  ++A   +   +      G +I  +  ++  +FD  S+   P  + +L
Sbjct: 80  DDYVSRLYNRVQSMLARLRIDRDIDLVKDRGAVILRV--KDAILFDAGSTELKPTALPIL 137

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISK 311
           +++  ++     ++ I GHTD     N A  NW +S+ RA +  +      +   DR+S 
Sbjct: 138 REVAGLVKPLPLLLRIEGHTDNQKPANPAITNWDISVQRAVAVLKFFAGEDLLPLDRLSA 197

Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVED 340
           + G+   R           + NRR++ ++E+
Sbjct: 198 V-GYGDQRPVAPGLGPEQQALNRRVEFVLEN 227


>gi|114571128|ref|YP_757808.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114341590|gb|ABI66870.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 329

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 111/334 (33%), Gaps = 21/334 (6%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           + A     +N   W      F+  L    LV+  + +     + A+ +      + L   
Sbjct: 5   RFARFQEADNGDHWPG----FVDALATLLLVIVFLLSIFVAGQFALSRALTGRDEQLAAL 60

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           +  +    +    +     +L     +  + ++ +  + +        +          +
Sbjct: 61  NAQLAQLADELALTQAENTEL----ELRVSGLETERDALSDALAMAGTQTAALQAELDVE 116

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            E  + S          +    D   ++N   +       + +   +   +RL     + 
Sbjct: 117 RELSEESQRALMMLNLQIQALRDQIATLNAALDAAELRAQEAEAQVINLGERLNAALAER 176

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ L+   +D   +       RTG+ I           +F   S+    E    L+ I +
Sbjct: 177 AAELAVYRSDFFGRLRAILGNRTGVRIVGDRFVFETDVLFPSGSAALSNEGRESLRPIAD 236

Query: 258 VL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +        +    VI I GHTD  P R     NW LS  RA S    +   GV  +R+
Sbjct: 237 AIIQLTDEIPSDLEWVIRIDGHTDPVPIRTTYPSNWHLSAARAISVVNWMEDLGVPSNRL 296

Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
              +GF  H   +   S   N+ NRRI++ +  R
Sbjct: 297 VA-AGFGEHYPMVEGRSAEANARNRRIELKLTAR 329


>gi|149197358|ref|ZP_01874409.1| chemotaxis MotB protein, putative [Lentisphaera araneosa HTCC2155]
 gi|149139376|gb|EDM27778.1| chemotaxis MotB protein, putative [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 19/228 (8%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            N     N  Q E  +  L       +D    +  EK   +        + K++ L    
Sbjct: 25  ENDQLKQNKAQLESERTELLEQKSGLED--HLSTKEKEQIELSQALDQEIKKQEALIEAH 82

Query: 189 KKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGI-------LISIIDQRNTPMFDK 239
           ++ L +  + +      +  +   +V+ +  E T   I        IS+    N  +F  
Sbjct: 83  QQTLDEFKRSVEEEKEEMSTLHSKLVEELQNEITSREIKLKELNGRISLS-MENKILFPS 141

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN--IARDNWRLSLDRAYSAY 296
            ++        VL KI + L+ +T+ I  + GHTD  P     + ++NW LS  RA S  
Sbjct: 142 GTANLGDRGTEVLNKISDALSETTDHIIRVEGHTDNVPLSGKGLYKNNWELSAARALSVV 201

Query: 297 -QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            ++L+   ++   I  ++          +      + NRRI+I +  +
Sbjct: 202 KELLITQQLNSKDIEAVA-MGEFHPVADNTTKDGRAQNRRIEIYLSPK 248


>gi|323258027|gb|EGA41706.1| hypothetical protein SEEM8283_04036 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 418

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 280 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 336

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 337 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 395

Query: 320 LKIASD--PMNSANRRIDILVED 340
               +D     + NRR++ILV +
Sbjct: 396 PVADNDSKAGRAKNRRVEILVVE 418


>gi|322614563|gb|EFY11492.1| hypothetical protein SEEM315_18040 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620081|gb|EFY16953.1| hypothetical protein SEEM971_15751 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623376|gb|EFY20215.1| hypothetical protein SEEM973_06161 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629326|gb|EFY26105.1| hypothetical protein SEEM974_10273 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632046|gb|EFY28800.1| hypothetical protein SEEM201_09439 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637216|gb|EFY33918.1| hypothetical protein SEEM202_19199 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639968|gb|EFY36639.1| hypothetical protein SEEM954_15657 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645904|gb|EFY42424.1| hypothetical protein SEEM054_14670 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652397|gb|EFY48751.1| hypothetical protein SEEM675_07291 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652601|gb|EFY48951.1| hypothetical protein SEEM965_20397 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660411|gb|EFY56647.1| hypothetical protein SEEM19N_20108 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664564|gb|EFY60757.1| hypothetical protein SEEM801_06607 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669383|gb|EFY65533.1| hypothetical protein SEEM507_01240 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670929|gb|EFY67062.1| hypothetical protein SEEM877_06997 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678832|gb|EFY74887.1| hypothetical protein SEEM867_12360 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681861|gb|EFY77886.1| hypothetical protein SEEM180_16428 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687987|gb|EFY83953.1| hypothetical protein SEEM600_10746 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194341|gb|EFZ79536.1| hypothetical protein SEEM581_21554 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197757|gb|EFZ82889.1| hypothetical protein SEEM501_21645 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203447|gb|EFZ88472.1| hypothetical protein SEEM460_07455 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206808|gb|EFZ91761.1| hypothetical protein SEEM020_02639 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213373|gb|EFZ98174.1| hypothetical protein SEEM6152_07603 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214666|gb|EFZ99417.1| hypothetical protein SEEM0077_18540 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221803|gb|EGA06208.1| hypothetical protein SEEM0047_03122 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323230011|gb|EGA14131.1| hypothetical protein SEEM0052_01387 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233750|gb|EGA17839.1| hypothetical protein SEEM3312_07048 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238556|gb|EGA22614.1| hypothetical protein SEEM5258_09862 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244244|gb|EGA28253.1| hypothetical protein SEEM1156_09790 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246405|gb|EGA30388.1| hypothetical protein SEEM9199_12008 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252212|gb|EGA36065.1| hypothetical protein SEEM8282_14849 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259875|gb|EGA43506.1| hypothetical protein SEEM8284_21890 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265110|gb|EGA48609.1| hypothetical protein SEEM8285_20494 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272673|gb|EGA56080.1| hypothetical protein SEEM8287_15269 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 434

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIASD--PMNSANRRIDILVED 340
               +D     + NRR++ILV +
Sbjct: 412 PVADNDSKAGRAKNRRVEILVVE 434


>gi|319793582|ref|YP_004155222.1| type IV / vi secretion system protein, dotu family [Variovorax
           paradoxus EPS]
 gi|315596045|gb|ADU37111.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus EPS]
          Length = 456

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPE 247
           L +   + +       + + +  E  R G+L        S++  R   +F   S   L  
Sbjct: 290 LPQTARAVVMPAPQPRLQRFLEPEI-REGLLTVRDEADRSVVVLRGDGLFASGSDRVLDR 348

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306
            + VL ++ + L      + + G +D  P R++    NW+LS  RA S  ++L       
Sbjct: 349 YVPVLSRVADALNSVEGNVLVSGFSDDQPIRSVRFPSNWQLSQARADSVKKMLAVRITRP 408

Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           +R+ +  G         +D     + NRR+++ + 
Sbjct: 409 ERL-RAEGRGDADPLAPNDSPANRARNRRVEVTLL 442


>gi|163796351|ref|ZP_02190312.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159178493|gb|EDP63035.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 561

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 100/296 (33%), Gaps = 14/296 (4%)

Query: 55  NATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
           N         + +        ++     + ++++  ++      + +    + ++ ++ +
Sbjct: 271 NEATRARLAELAEALKKADSRVVRLETDLSEQRDVTKKLEARLAEQTERTRLAQSELEQR 330

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
                +    Q              +E  +     +++      +   +E ++   E   
Sbjct: 331 DIRLEELFSEQERTQQKLTEEQKISAESSRQVELLNAQIAALRQQLARIEAALEATETQN 390

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
                +   L  +    L    ++++   S       ++ VL +     I+      ++ 
Sbjct: 391 RDQKVQILDLGRRLNAALATKVQELARFRSEFFGR--LREVLSDRDDVRIVGDRFVFQSE 448

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA-RDNW 285
            +F   S+       V L +    L      I         + GHTD  P  N   R NW
Sbjct: 449 VLFGSGSAQIGEPGKVKLGQFAATLREIAPRIPKNIGWILQVEGHTDTVPIHNEQFRSNW 508

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            LS  RA S  + L+  G+  +R+S  +G+  ++    +D     NRRI++ +  R
Sbjct: 509 ELSAARAISVVKYLVDQGIPAERLSA-TGYGEYQPIDPAD--LERNRRIEMKLTQR 561


>gi|307721192|ref|YP_003892332.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979285|gb|ADN09320.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 259

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 11/203 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                   + SE    L  +  + +   + E      L    I        + +  ++ +
Sbjct: 36  SMSSMDAKKISEAIGSLSGAMSVLEGGTQTEISKKRMLEATPIDIQDETSEIVNRVQQAA 95

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVL 259
              + ++       +  +  + G +I +     T +F+  S+     + ++ L++I  ++
Sbjct: 96  GDANEMMEKTQSPAITIKEAQDGFVIKL---PATLLFNPGSATIENQDALLFLKRITLII 152

Query: 260 AHSTEV--ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
                   + ++GHTD + P  N    DNW LS  RA +    L+  GV   R+S  +GF
Sbjct: 153 QELPNDMLVDVQGHTDNTGPGANSPYKDNWELSTARALAVLHELILDGVDPARMSA-TGF 211

Query: 316 AHHRLK--IASDPMNSANRRIDI 336
           A ++     A+      NRR+++
Sbjct: 212 AQYQPIATNATATGREKNRRVEL 234


>gi|118588357|ref|ZP_01545766.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614]
 gi|118439063|gb|EAV45695.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614]
          Length = 321

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 22/225 (9%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q      +      E    +        ++ ++       L   +      + ++  L K
Sbjct: 98  QLENLLDDERQISQEALAQVELLNQQIAALRRQIAAANAALEASEAKEADSQAKIASLGK 157

Query: 198 KISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++++ L   V +           ++ +L + +   ++      ++  +FD       PE 
Sbjct: 158 RLNAALVQRVQELSRYRSDFFGRLREILSQRSDISVVGDRFVFQSEVLFDSGQEDINPEG 217

Query: 249 IVVLQKIGEVL----AHSTEVIS----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298
              L K+ + +    A   + I+    + GHTDA P     R  +NW LS  RA S  + 
Sbjct: 218 RQELDKLADAIQELSAQIPDEINWVLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRY 277

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           L++ GV   R+   +GF   +     D     + NRRI++ + +R
Sbjct: 278 LIERGVDPKRLVA-AGFGEFQPLEEGDTQEALAKNRRIELKLTER 321


>gi|269976278|ref|ZP_06183274.1| flagellar motor protein MotD [Mobiluncus mulieris 28-1]
 gi|269935607|gb|EEZ92145.1| flagellar motor protein MotD [Mobiluncus mulieris 28-1]
          Length = 325

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 7/205 (3%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS    + L   S  G     ++ +        +        E+I AM     L  + ++
Sbjct: 59  QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   L+       ++      T  G+++ ++       F    +   P    VL  +  V
Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173

Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           LA + E ++I G+ D +P +      N+ L+  RA      L   GV   ++  IS  A 
Sbjct: 174 LAGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233

Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341
           H+ ++ +     S NRR+DI++  R
Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258


>gi|170693360|ref|ZP_02884520.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170141890|gb|EDT10058.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 230

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ S L+ L  +   + +    T  G+ I+I       +F+   +  LPE+  VL +I  
Sbjct: 91  QLLSLLAPLQDN---RQITISHTPQGVEIAI---NAKVLFNSGDARLLPESFAVLDRIAA 144

Query: 258 VLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           VL   +   I + GHTD+ P        NW LS  RA +  +     G+   R++ I G 
Sbjct: 145 VLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADKGIEAHRMAAI-GR 203

Query: 316 AHHRLKI 322
           A +   I
Sbjct: 204 ADNFPLI 210



 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 19 KKVAIDDTPNNLG--------SWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          K++A D   ++ G         W I YAD +T LM  FL ++++    +   +
Sbjct: 8  KRLATDKNGHDDGQDSGEQSDRWLISYADLITTLMVLFLALYVLQLAKNSELQ 60


>gi|160880837|ref|YP_001559805.1| OmpA/MotB domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429503|gb|ABX43066.1| OmpA/MotB domain protein [Clostridium phytofermentans ISDg]
          Length = 275

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 110/327 (33%), Gaps = 68/327 (20%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +K   ++       W   +AD M +L+ FF++++  +  D +    +    +        
Sbjct: 7   RKKKTEEASAGAPLWMNTFADLMNLLLCFFVLLFAFSNVDQEKFDQVAASLSSSFSIFSG 66

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
               I D Q          I++ + +       D     TN  +    ++          
Sbjct: 67  GHSSIGDGQ---------LINMGVSQ-----LNDFNQYFTNMGQTIDSVDGEKIDELKQL 112

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            +E  K    +  E   ++    +L+K ++                              
Sbjct: 113 LTEANKAETEKMYENITEMSGQYNLDKYLD------------------------------ 142

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                              ET +TG    +I+   + ++D   +    E + +  K+G++
Sbjct: 143 ------------------IETDKTGGQYVLINISGSLLYDSGKAQLKSEALPIFSKVGDI 184

Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315
           L       IS+ GHTD  P  +   R N  LS  RA +A + L+   G+    I  I G 
Sbjct: 185 LKTYKGYRISVIGHTDNVPVTSGIYRSNKELSSARAINAAEYLIDVKGIDPSNIEWI-GR 243

Query: 316 AHHRLK--IASDPMNSANRRIDILVED 340
             +      +S+   S NRRI+I + +
Sbjct: 244 GEYDPIADNSSEAGRSKNRRIEIRIYN 270


>gi|294504689|ref|YP_003568751.1| putative OmpA family protein [Yersinia pestis Z176003]
 gi|262362751|gb|ACY59472.1| putative OmpA family protein [Yersinia pestis D106004]
 gi|294355148|gb|ADE65489.1| putative OmpA family protein [Yersinia pestis Z176003]
          Length = 186

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 48  RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 104

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 105 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 163

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 164 PVSSNDDATGRSQNRRVEIFV 184


>gi|171319661|ref|ZP_02908754.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           ambifaria MEX-5]
 gi|171095114|gb|EDT40122.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           ambifaria MEX-5]
          Length = 411

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           +   +K++ D+A+            L  L+ D I  G +  +       S +  R   MF
Sbjct: 249 SADVQKQIADIARMTPPPAPPPQLHLKQLLQDEIAAGTV--SVDEDARHSAVTFRGDAMF 306

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAY 296
               +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    
Sbjct: 307 KPGGASVQASMNPLISKIAAEIAKVPGKVTIIGYTDNVPIRSRHFASNQMLSEERATQVM 366

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           Q+L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 367 QMLQTAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 407


>gi|311695186|gb|ADP98059.1| flagellar motor protein MotD [marine bacterium HP15]
          Length = 260

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 13/195 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKRLQD 194
           SE             + +      ++S+N      +PP   E     ++ A  R + L+ 
Sbjct: 50  SETLTGVFNAPQRSFQPIEIGDQPQRSLNAPAENVIPPAVTEAPRNPEMDAQARTEALRA 109

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A ++S     L+   +   V  ET+   + +++    N+ +F    + P  +   V++K
Sbjct: 110 MADQLSMEFDELINQGV---VSLETSDQWLELNL---PNSLLFGSGDAEPHYDAFEVVEK 163

Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I  VL +    + + G TD  P   +    NW LS  RA +  ++L+  G+  +R++ + 
Sbjct: 164 IATVLNNRDNAVKVEGFTDNQPISTSRFPSNWELSAARAAAMVRMLVMEGIEPERLAAV- 222

Query: 314 GFAHHRLKIASDPMN 328
           G+  ++    +D   
Sbjct: 223 GYGQYQPVSRNDTEE 237



 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++    D  +N   W I YADF+T+L AFF+VM+ +++ ++   K + +         
Sbjct: 1   MRRRRQPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLTGVFNAP 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             + + I +  + P+RS     +  I   +T+   + ++ +  + +  + + + +    +
Sbjct: 61  QRSFQPI-EIGDQPQRSLNAPAENVIPPAVTEAPRNPEMDAQARTEALRAMADQLSMEFD 119

Query: 137 S 137
            
Sbjct: 120 E 120


>gi|227876751|ref|ZP_03994860.1| flagellar motor protein B [Mobiluncus mulieris ATCC 35243]
 gi|306817698|ref|ZP_07451440.1| OmpA/MotB domain protein [Mobiluncus mulieris ATCC 35239]
 gi|227842648|gb|EEJ52848.1| flagellar motor protein B [Mobiluncus mulieris ATCC 35243]
 gi|304649512|gb|EFM46795.1| OmpA/MotB domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 325

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 7/205 (3%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS    + L   S  G     ++ +        +        E+I AM     L  + ++
Sbjct: 59  QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   L+       ++      T  G+++ ++       F    +   P    VL  +  V
Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173

Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           LA + E ++I G+ D +P +      N+ L+  RA      L   GV   ++  IS  A 
Sbjct: 174 LAGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233

Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341
           H+ ++ +     S NRR+DI++  R
Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258


>gi|83310388|ref|YP_420652.1| hypothetical protein amb1289 [Magnetospirillum magneticum AMB-1]
 gi|82945229|dbj|BAE50093.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1]
          Length = 333

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 30/311 (9%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           +LM F L  + +       +KA++          + L   +K     Q     S   K  
Sbjct: 31  LLMIFVLAQFFLGQALSGRQKALDDLGREMAALAEKLNLQTKANAALQAELVSSRAEKEK 90

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L       +  +   +   ++K+     E  I     +Q +      +    E+   +  
Sbjct: 91  LEHWAAGVQQDMAALLTLKDEKEAELAAEKKISDEGRAQLA-LLSRQIEALKEELARVAA 149

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           + D  ++ +KE+   +  L K   +A+  K + LQ    +    L  ++ D         
Sbjct: 150 ALDASETRDKEQKAQISDLGKRLNVALAGKVEELQKYRSEFFGRLRKVLGD--------- 200

Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--------EVISI 268
             R GI I       ++  +F   S+    E    ++K+   +             V+ +
Sbjct: 201 --RPGIRIEGDRFVFQSELLFATGSAELGTEGAEQVRKLAATIREINAGMPKGLNWVLRV 258

Query: 269 RGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GHTD  P  +     NW LS  RA +  + L   GV  DR++  +GF   +   + +  
Sbjct: 259 DGHTDKRPITSGKFPSNWELSTARAITVLRALAADGVPRDRLAA-AGFGEFQPVDSGNTE 317

Query: 328 N--SANRRIDI 336
              + NRRI+I
Sbjct: 318 AAYAKNRRIEI 328


>gi|114563544|ref|YP_751057.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114334837|gb|ABI72219.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 429

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 10/156 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +++  +D A  +   L   +  N+++    E     + I I       +F   ++ P  
Sbjct: 280 AQQQISRDEALLLQQLLQTEIGKNLLE---VEQLSDRVRIRIGATE---LFASGNTQPRS 333

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +   +L KI   L  +   I I GHTD  P   +    NW LSL RA S   VL  S   
Sbjct: 334 DFEAILAKIALTLESTDGKILITGHTDDEPIFTSKYPSNWHLSLARATSIANVLANSASL 393

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
             R+    G      ++ +D     + NRRI+I + 
Sbjct: 394 SGRLWP-EGRGESEPRVVNDNEQNRALNRRIEIDLL 428


>gi|268316337|ref|YP_003290056.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333871|gb|ACY47668.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252]
          Length = 253

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +    +P +  + +     K++L+    K    +  L   N+   V    T  G+ + I 
Sbjct: 65  QSEAVIPSIKNQVVQRRLSKEQLE----KYEELIQYLQEHNLEGKVQVNLTDKGLHLIIT 120

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288
           D     MF    +  +  +  +L+ +  ++    E + + GHTD  P        NW LS
Sbjct: 121 DS---IMFRSGEAEIIEPSRTILRILAGIIDDRIESVVVEGHTDNRPIHTARFPSNWELS 177

Query: 289 LDRAYSAYQVLMK--SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             RA +  + L++    +   R   + G+     +  +      + NRR++IL
Sbjct: 178 AARAAAVVRFLLEQTDALPPSRYMAV-GYGEFHPRDTNATPEGRARNRRVEIL 229



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             W   ++D  T+L+ FF+++  ++  +    K    +F 
Sbjct: 18 APFWMTTFSDMATLLLTFFVMIVAMSEVEVKKFKEALSFFQ 58


>gi|167744038|ref|ZP_02416812.1| hypothetical protein Bpse14_38553 [Burkholderia pseudomallei 14]
          Length = 379

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 227 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 280

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 281 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 339

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 340 TLDPVAPNDSPANRARNRRVEITLM 364


>gi|120436663|ref|YP_862349.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578813|emb|CAL67282.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 281

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 93/241 (38%), Gaps = 12/241 (4%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N ++ K   T  +     ++ N         +   KN    ++    ++     L K   
Sbjct: 25  NELETKQRETQDQLNTATVKLNSCLDEKESLNGQIKNLNNTNAALLNNVGDLATLSKKEA 84

Query: 169 KEENYFLPPLSKEKILAMKRKKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +     L  + ++ +     +  +     +   + ++L G + D   + +     +  + 
Sbjct: 85  ENMERSLESIKEKDLAIRSMQDAMNKKDSVTLALVTSLKGALGDLSDEDIEINVEKGVVY 144

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARD 283
           +SI D     +FD       P    VL K+  V+ +       + GHTD      ++  D
Sbjct: 145 VSISD---KLLFDSGRYNIKPRAKEVLGKVATVVKNKPNIEFMVEGHTDDQAISTSMFED 201

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           NW LS+ RA S  +VL    G+   R++  +G +++    +++     + NRR  I+V  
Sbjct: 202 NWDLSVKRATSVVRVLQDDFGIEPARMTA-AGRSYYIPVASNETAEGRAKNRRTRIVVLP 260

Query: 341 R 341
           +
Sbjct: 261 K 261


>gi|327481195|gb|AEA84505.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166]
          Length = 244

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +      + V+ ++   LA +   I + GHTD  P +      NW LS  RA S
Sbjct: 133 LFGSGRAELEDAGLEVIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASS 192

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             + L  +G+   R+S  +G+A  R     A +   ++NRR++++++ 
Sbjct: 193 VVRYLQLAGIEATRLSA-TGYADTRPLADNADERGRASNRRVELVMQT 239


>gi|194288765|ref|YP_002004672.1| replication/virulence associated protein; outer membrane protein,
           ompa family membrane protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222600|emb|CAQ68603.1| replication/virulence associated protein; putative outer membrane
           protein, OmpA family membrane protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 425

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+ L+ D I +GV           +I   R   MF +  +    + + +L K+   ++ 
Sbjct: 287 RLAELLRDEIARGV-VSVQEDATRSAIT-FRGDDMFGRGRADVSEKILPLLDKVAAEVSK 344

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            T  +++ GHTD  P +      N  LS +RA +  + L   GV+++R+  I G    + 
Sbjct: 345 VTGKVTVIGHTDNVPIKTAKYPSNQALSEERAATVAEYLASKGVAKNRLEAI-GKGDSQP 403

Query: 321 KIASDP--MNSANRRIDILV 338
              +      + NRR++I+V
Sbjct: 404 LADNKAPVGRARNRRVEIVV 423


>gi|220924409|ref|YP_002499711.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219949016|gb|ACL59408.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 337

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 103/297 (34%), Gaps = 28/297 (9%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130
           F    ++    + D  N       + + L      T       + S  Q+ + +R    +
Sbjct: 42  FLSQEISGRDSVLDRLNRQIAELTDLLALERSGRRTLEETTAALRSNLQESETERRRLQD 101

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184
                   Q +  +     D EKG      + +E       ++ ++       L+  +  
Sbjct: 102 ALTADQGAQGKATELGRQLDVEKGATNRALSQVELLSQQIAAMRQQLAALEEALAASETR 161

Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235
             + + R+ DL  +++  L+  V +           ++ +L   +   I+      ++  
Sbjct: 162 DRESQARIADLGSRLNVALAQRVQELARYRSDFFGRLRQILGNRSDIRIVGDRFVLQSEV 221

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN-IARDNWR 286
           +F    +    E    L +I   +        +    V+ + GHTDA P  +     NW 
Sbjct: 222 LFAAGQASLRAEAGPELDRIATAIRELNRQIPSDIPWVLRVDGHTDARPISSSAFPSNWA 281

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           LS  RA +  Q L+  G+    +     F   +      SD   + NRRI++ + +R
Sbjct: 282 LSAARAIAVVQYLVGRGIPPQHLLA-GAFGEFQPIDTGTSDEAYARNRRIELKLTER 337


>gi|330904017|gb|EGH34589.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 88

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                      +LFE T+ G+ I I+D  N PMFD  S+   P    +L  + + +    
Sbjct: 4   ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVP 63

Query: 264 EVISIRGHTDASPFRNIA 281
             +SI GHTDA+PF    
Sbjct: 64  NKVSISGHTDATPFVGSG 81


>gi|325294742|ref|YP_004281256.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065190|gb|ADY73197.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 255

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGH 271
           G     T+  +L+ +    N  +F  +S    P+    L K+ E++        + I GH
Sbjct: 91  GYQIVVTQEYVLLRLF---NKVLFKPNSLELTPKAKEALDKVAEIIKKLPGNYQVRIEGH 147

Query: 272 TD-ASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP- 326
           T    P + +    D+W LS+ RA +  + L+  GV+  +I  + G+ + R      +P 
Sbjct: 148 TSIEEPTKYLPYIHDDWDLSIRRATTVAKYLVSRGVNPKKIIAV-GYGNTRPLYTWKNPI 206

Query: 327 MNSANRRIDILVE 339
           + + NRR++I +E
Sbjct: 207 LQARNRRVEIYLE 219



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + +K   +       +W   ++D M++L+ FF++++ ++  D         YF       
Sbjct: 1  MARKKKEECKT--APAWLTSFSDLMSLLLTFFILLYSMSTLDVTKAIKFLSYFQGEKAKS 58

Query: 77 MT 78
            
Sbjct: 59 FE 60


>gi|167851058|ref|ZP_02476566.1| hypothetical protein BpseB_37821 [Burkholderia pseudomallei B7210]
          Length = 415

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 263 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 316

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 317 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 375

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 376 TLDPVAPNDSPANRARNRRVEITLM 400


>gi|146282858|ref|YP_001173011.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
 gi|145571063|gb|ABP80169.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501]
          Length = 244

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +      + V+ ++   LA +   I + GHTD  P +      NW LS  RA S
Sbjct: 133 LFGSGRAELEDAGLEVIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASS 192

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             + L  +G+   R+S  +G+A  R     A +   ++NRR++++++ 
Sbjct: 193 VVRYLQLAGIEATRLSA-TGYADTRPLADNADERGRASNRRVELVMQT 239


>gi|303325924|ref|ZP_07356367.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863840|gb|EFL86771.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3]
          Length = 235

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A+KI   L          G+  +     + +      +  MF   S   LPE   VL  
Sbjct: 84  IAQKIKQMLMADAVPQSSSGISADDVGVQLRV-----NSDVMFKAGSVDFLPEGEKVLGS 138

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           + ++L      + +RGH D++  R      W LS  RA +    L   GV   R+  ++ 
Sbjct: 139 VLQILKEYNLYLVVRGHADSTEARPPYASAWELSGARAAAVLHYLADHGVKPTRLRGVA- 197

Query: 315 FAHHRLKIA--SDPMNSANRRID 335
           +   R       +   + NRR++
Sbjct: 198 YGDTRPLKPGIDEESRAVNRRVE 220



 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           +WK+ YADF+T +MAFFL++W++N    +T+  +  YF+       +++  + +      
Sbjct: 4   AWKVAYADFVTAMMAFFLLLWVLNMVPPETRAGLAAYFSGERNFDSSSTSPVSNNPFIQN 63

Query: 92  RSSQNKIDLSIDE 104
               +  DL I+E
Sbjct: 64  TDKIDTRDLKINE 76


>gi|167467398|ref|ZP_02332102.1| possible OmpA/MotB family protein [Yersinia pestis FV-1]
          Length = 263

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 125 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 181

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 182 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 240

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 241 PVSSNDDATGRSQNRRVEIFV 261


>gi|168334555|ref|ZP_02692711.1| flagellar motor protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 251

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 177 PLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           P  +++  A   K+    ++++ +++   L     DN    V  E     ++++  D   
Sbjct: 81  PEEEDRKAAENIKQITIEMENIKEELDKFLKSEGLDN---KVTVEQDGEEVVLTFED--- 134

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNI-ARDNWRLSL 289
             +FD   ++  P+ + VL KIG  +        +    GHTD  P  ++    NW LS 
Sbjct: 135 FMLFDSGLAVIKPDGLEVLGKIGNEIKQYLEDDYIARAEGHTDNLPINSLIFPSNWELSA 194

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA S  + L+   G+S  RIS   GF        +D     + NRR++I +
Sbjct: 195 SRAISVAKYLINDIGISPMRISA-EGFGEFYPIATNDTPEGRAQNRRVEIKI 245



 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK   ++ P    +W   ++D MT+L+ FF++++ +++ D     A    ++  G   
Sbjct: 1   MAKKKKEEEAPAGAPAWMATFSDLMTLLLCFFVLLFSMSSLDIAKFTAFINSYS--GSTG 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           +     +    N         +    D    +N   + I   N K++  + 
Sbjct: 59  IIDGGEVLLNSNGMLGGGVENVPEEEDRKAAENIKQITIEMENIKEELDKF 109


>gi|53716349|ref|YP_105194.1| hypothetical protein BMAA0398 [Burkholderia mallei ATCC 23344]
 gi|53723119|ref|YP_112104.1| hypothetical protein BPSS2105 [Burkholderia pseudomallei K96243]
 gi|67642591|ref|ZP_00441345.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|121596826|ref|YP_991186.1| hypothetical protein BMASAVP1_1592 [Burkholderia mallei SAVP1]
 gi|124382978|ref|YP_001025575.1| hypothetical protein BMA10229_1777 [Burkholderia mallei NCTC 10229]
 gi|126443591|ref|YP_001063957.1| hypothetical protein BURPS668_A2966 [Burkholderia pseudomallei 668]
 gi|126447095|ref|YP_001077649.1| hypothetical protein BMA10247_A0447 [Burkholderia mallei NCTC
           10247]
 gi|126458045|ref|YP_001076870.1| hypothetical protein BURPS1106A_A2841 [Burkholderia pseudomallei
           1106a]
 gi|167821238|ref|ZP_02452918.1| hypothetical protein Bpse9_39318 [Burkholderia pseudomallei 91]
 gi|167829581|ref|ZP_02461052.1| hypothetical protein Bpseu9_38230 [Burkholderia pseudomallei 9]
 gi|167908000|ref|ZP_02495205.1| hypothetical protein BpseN_37601 [Burkholderia pseudomallei NCTC
           13177]
 gi|226193911|ref|ZP_03789512.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237508208|ref|ZP_04520923.1| OmpA-family protein [Burkholderia pseudomallei MSHR346]
 gi|242312724|ref|ZP_04811741.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254177324|ref|ZP_04883980.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|254184501|ref|ZP_04891090.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|254194178|ref|ZP_04900610.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|254203138|ref|ZP_04909500.1| ompA family protein [Burkholderia mallei FMH]
 gi|254208472|ref|ZP_04914821.1| ompA family protein [Burkholderia mallei JHU]
 gi|254300798|ref|ZP_04968242.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|254359345|ref|ZP_04975617.1| ompA family protein [Burkholderia mallei 2002721280]
 gi|52213533|emb|CAH39585.1| putative outer membrane porin protein [Burkholderia pseudomallei
           K96243]
 gi|52422319|gb|AAU45889.1| ompA family protein [Burkholderia mallei ATCC 23344]
 gi|121224624|gb|ABM48155.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|126223082|gb|ABN86587.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126231813|gb|ABN95226.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|126239949|gb|ABO03061.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|147746183|gb|EDK53261.1| ompA family protein [Burkholderia mallei FMH]
 gi|147751159|gb|EDK58227.1| ompA family protein [Burkholderia mallei JHU]
 gi|148028532|gb|EDK86492.1| ompA family protein [Burkholderia mallei 2002721280]
 gi|157810991|gb|EDO88161.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|160698364|gb|EDP88334.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|169650929|gb|EDS83622.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|184215093|gb|EDU12074.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|225933856|gb|EEH29842.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|235000413|gb|EEP49837.1| OmpA-family protein [Burkholderia pseudomallei MSHR346]
 gi|238523774|gb|EEP87210.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|242135963|gb|EES22366.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|261827068|gb|ABM98527.2| ompA family protein [Burkholderia mallei NCTC 10229]
          Length = 438

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 340 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423


>gi|218929795|ref|YP_002347670.1| putative OmpA family protein [Yersinia pestis CO92]
 gi|115348406|emb|CAL21342.1| putative OmpA family protein [Yersinia pestis CO92]
          Length = 261

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I K ++  + T     +     +   MF   S    PE I V++++ + + 
Sbjct: 123 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 179

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I I GHTD+ P  +    +N  LS  RA +  + + ++G+  D+I +  G    +
Sbjct: 180 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 238

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 239 PVSSNDDATGRSQNRRVEIFV 259


>gi|293395553|ref|ZP_06639836.1| OmpA family protein [Serratia odorifera DSM 4582]
 gi|291421872|gb|EFE95118.1| OmpA family protein [Serratia odorifera DSM 4582]
          Length = 406

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L   +   I +G++         + I+  +   +FD +++   P  I V+ +I + +  
Sbjct: 250 NLKTFLRKEIAEGLVVVRDEAQQSVVIL--KGDGLFDSAATTVRPAYIPVIDRIAKAMNG 307

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +  I + G++D  P R+     NW LSL RA +  + L K   +  R+    G      
Sbjct: 308 VSGKILVTGYSDNLPIRSARFPSNWELSLARAEAVSERLQKQLDNPQRVKA-EGRGDSNP 366

Query: 321 KIASD--PMNSANRRIDILVE 339
              +D     + NRR++I + 
Sbjct: 367 VAPNDSKENRALNRRVEITLL 387


>gi|315921071|ref|ZP_07917311.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694946|gb|EFS31781.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N+Q S   KN L   ++ G  + +   +      E+      LS++K    +R++ + +L
Sbjct: 49  NAQMSAQIKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 108

Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247
              I +    +  +  N+   +L  +T   + +   D +      +  +F   S+     
Sbjct: 109 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 167

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304
               L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K+  V
Sbjct: 168 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 227

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  +I + SG   +     ++     S NRR +I++  +
Sbjct: 228 NPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265


>gi|255533363|ref|YP_003093735.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255346347|gb|ACU05673.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 282

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +  K +   L   +++ L+  ++   ++ V  +  +  + IS+ D     ++   S   L
Sbjct: 109 VNTKNKSDSLNMVLTNNLTRSLSREELRDVDVQVLKGVVYISLSDNM---LYKSGSYEIL 165

Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-S 302
           P+    L KI +++       + I G+TD  P   +  R+NW LS  RA S  Q L    
Sbjct: 166 PKAGETLSKIAKIIKDYRDYDVLIEGNTDNVPISMVNIRNNWDLSALRASSVVQALQNTY 225

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           GV   R++   G   +    A+D     + NRR  I++  +
Sbjct: 226 GVDPKRLTA-GGRGEYNPLAANDTEAGKAKNRRTQIIITPK 265


>gi|288957797|ref|YP_003448138.1| chemotaxis protein [Azospirillum sp. B510]
 gi|288910105|dbj|BAI71594.1| chemotaxis protein [Azospirillum sp. B510]
          Length = 464

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           + L++      D     E    +  + ++      +  D+++ +   +    R++     
Sbjct: 175 QALLSELGATRDRAKSLESELASATEKTMLAQKEIDKRDIRLKALETQLTDNRMQAQKDL 234

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFLPPLSKEKILAMKRK 189
                +      SLT +   G    +  DL      ++  +       L   +  +  +K
Sbjct: 235 DQRDLRIRDLMASLTGEQAAGTRSKQQIDLLNQQLLALRDQLARIGAALEASEKASADQK 294

Query: 190 KRLQDLAKKISSTLSGLVADNIV-KGVLFETTRTGIL----ISIIDQ----RNTPMFDKS 240
            ++ +L  +++  L+  V D    K   F   R  +     + I+      ++  +F   
Sbjct: 295 VQIAELGARLNQALAAKVQDLARYKSEFFGRVREALGNRPDVRIVGDRFVFQSELLFPSG 354

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIARDNWRLSLDRA 292
           S+         L  +   L    +VI         + GHTD  P R     NW LS  RA
Sbjct: 355 SATLEEAGKQRLADLARTLIEIGKVIPPDINWVLRVDGHTDIKPVRFQFSSNWELSSARA 414

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
            S  + L+  G+  +R++  + F   +      SD   + NRRI+I ++ R
Sbjct: 415 LSVVKFLIDQGIPAERLAAAA-FGEFQPIDPGTSDEALAKNRRIEIKLDQR 464


>gi|332703401|ref|ZP_08423489.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553550|gb|EGJ50594.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 249

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           I  +K ++++ +  +K+ + +        +KGV+      GI+   +   +  MF     
Sbjct: 86  IDQVKLQRQIMENQRKLFTEVQFYQNTKGLKGVVGAHFDKGIITLRV--PSDVMFAPGQV 143

Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
               + + VL+ + ++L  H+ + I+IRG TD       +R  DNW +S  R+ +  +VL
Sbjct: 144 ELTTQGVAVLRDLKDLLIKHADQRINIRGFTDDVRPSGNSRFKDNWEISAMRSVNVLRVL 203

Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
           M  G+   R++  +G A       ++     + NRRI+I +E R G
Sbjct: 204 MSLGMEPTRLTA-TGLADLEPLFPNNSTENRARNRRIEITLEKRVG 248


>gi|262199850|ref|YP_003271059.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262083197|gb|ACY19166.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 266

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 12/225 (5%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            +    +   ++        ++   +  T  SE+ +   ++      +  +       L 
Sbjct: 36  DELTATQARLDLAEQERDANAQEVASLQTELSERAEMSDETRRRMAKLTDDMQATEQELL 95

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           + +    K ++RL+   +++      LV    ++    +     +++ +    +  +F  
Sbjct: 96  ELRAQQQKAEERLKAF-RQLYDRFQALVDTGKLQ---VDFRNGQMVLKL---PSEVLFPS 148

Query: 240 SSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297
             +    +    L ++  +L         + GHTDA   R    +DNW LS  RA S   
Sbjct: 149 GRAKLSDKGQEALSEVLNILMEFKDRRFLVAGHTDAVKIRGGRFKDNWDLSTARAVSVVD 208

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            ++++G   + +   +G+        +D     + NRRI+I++  
Sbjct: 209 YMVEAGFDPNNLGA-AGYGEFDPVAPNDTAENRALNRRIEIILVP 252


>gi|167722035|ref|ZP_02405271.1| hypothetical protein BpseD_23689 [Burkholderia pseudomallei DM98]
          Length = 433

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|6045178|dbj|BAA85317.1| MotB protein, partial [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 176

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 1/175 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
            + +    S+ +      +      ++G  +       + + K  +  + P  ++
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRD 175



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVV 251
            IID +N PMF   S+   P    +
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDI 176


>gi|323225691|gb|EGA09915.1| hypothetical protein SEEM0055_14308 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 324

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 186 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 242

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 243 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 301

Query: 320 LKIASD--PMNSANRRIDILVED 340
               +D     + NRR++ILV +
Sbjct: 302 PVADNDSKAGRAKNRRVEILVVE 324


>gi|330814655|ref|YP_004362830.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           gladioli BSR3]
 gi|327374647|gb|AEA65998.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           gladioli BSR3]
          Length = 420

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 4/138 (2%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  L+ D I  G +  +       S +  R   MF             ++ KI   +   
Sbjct: 283 LKQLLKDEIAAGTV--SVDEDARHSAVTFRGDAMFPPGGVTIKSAMAPLVAKIAGEIVKV 340

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRL 320
              +S+ G+TD  P R+     N  LS +RA    Q+L  +GV  +R+  +  G A    
Sbjct: 341 PGKVSVLGYTDNLPIRSRQFPSNEALSEERATQVLQMLQAAGVPANRLEAVGKGDADPIG 400

Query: 321 KIASDPMNSANRRIDILV 338
              +    + NRR++I+V
Sbjct: 401 DNRTAQGRAQNRRVEIVV 418


>gi|167002401|ref|ZP_02268191.1| ompA family protein [Burkholderia mallei PRL-20]
 gi|243061889|gb|EES44075.1| ompA family protein [Burkholderia mallei PRL-20]
          Length = 438

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 340 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423


>gi|167725111|ref|ZP_02408347.1| hypothetical protein BpseD_39196 [Burkholderia pseudomallei DM98]
          Length = 407

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 255 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 308

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 309 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 367

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 368 TLDPVAPNDSPANRARNRRVEITLM 392


>gi|167916344|ref|ZP_02503435.1| hypothetical protein Bpse112_38087 [Burkholderia pseudomallei 112]
          Length = 421

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 269 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 322

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 323 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 381

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 382 TLDPVAPNDSPANRARNRRVEITLM 406


>gi|153004433|ref|YP_001378758.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028006|gb|ABS25774.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 498

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289
           R    F+  S+   PE+  +L ++  +L    E   + + GHTD       A  N  LS 
Sbjct: 390 RGKVQFETGSARLKPESQRLLDQVASILRAHPEIRRVRVEGHTDDV---GPALTNKELSE 446

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA S    L++ G++  R+  I G+   R    +      + NRR++ ++
Sbjct: 447 RRADSVRDALVRRGIAPSRL-SIRGYGESRPIAPNKTKAGRAKNRRVEFVI 496


>gi|213855850|ref|ZP_03384090.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 172

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            + +    S+ +      +      ++G  +       + + K  +  + P 
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPY 172



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPMFDKSSSIPLPE 247
            IID +N PMF   S+   P 
Sbjct: 152 QIIDSQNRPMFKTGSAEVEPY 172


>gi|76818070|ref|YP_336766.1| hypothetical protein BURPS1710b_A1609 [Burkholderia pseudomallei
           1710b]
 gi|126457603|ref|YP_001074182.1| hypothetical protein BURPS1106A_A0139 [Burkholderia pseudomallei
           1106a]
 gi|134280945|ref|ZP_01767655.1| SciP protein [Burkholderia pseudomallei 305]
 gi|167826573|ref|ZP_02458044.1| hypothetical protein Bpseu9_23060 [Burkholderia pseudomallei 9]
 gi|167848091|ref|ZP_02473599.1| hypothetical protein BpseB_22661 [Burkholderia pseudomallei B7210]
 gi|167905011|ref|ZP_02492216.1| hypothetical protein BpseN_22374 [Burkholderia pseudomallei NCTC
           13177]
 gi|167913331|ref|ZP_02500422.1| hypothetical protein Bpse112_22785 [Burkholderia pseudomallei 112]
 gi|226198766|ref|ZP_03794330.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242313911|ref|ZP_04812928.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254189633|ref|ZP_04896143.1| SciP protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254195529|ref|ZP_04901957.1| SciP protein [Burkholderia pseudomallei S13]
 gi|76582543|gb|ABA52017.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b]
 gi|126231371|gb|ABN94784.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|134247967|gb|EBA48051.1| SciP protein [Burkholderia pseudomallei 305]
 gi|157937311|gb|EDO92981.1| SciP protein [Burkholderia pseudomallei Pasteur 52237]
 gi|169652276|gb|EDS84969.1| SciP protein [Burkholderia pseudomallei S13]
 gi|225929206|gb|EEH25229.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242137150|gb|EES23553.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 433

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|126668169|ref|ZP_01739130.1| Flagellar motor protein [Marinobacter sp. ELB17]
 gi|126627318|gb|EAZ97954.1| Flagellar motor protein [Marinobacter sp. ELB17]
          Length = 279

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 9/192 (4%)

Query: 152 EKGKDLCKSTDLEKSINKEEN-YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           + G    K +D   S++ ++     P L  E+  +       + +    SS +  L  + 
Sbjct: 72  DGGSLPIKISDGNSSLDPDKQLQAEPELIDERSTSDGVTPVSEGVITLASSLIRELENEV 131

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
               +  +     ++I   +      F    +    E + +++++ +VL +    + + G
Sbjct: 132 ASGALNVDYDEHQVIIRFSEDAT---FMSGDATIKKEMLPIIERVVDVLKNCRGDVVVAG 188

Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--P 326
           +TD  P  +     NW LS  RA S    L+    V  DR+   +G A     + ++   
Sbjct: 189 YTDDRPIASSRYRSNWDLSAARAVSVVHELVLNRDVPADRVIA-AGRAETNPLVPNNSPE 247

Query: 327 MNSANRRIDILV 338
             + NRR++I +
Sbjct: 248 NRAVNRRVEIAI 259


>gi|76817452|ref|YP_336363.1| hypothetical protein BURPS1710b_A1205 [Burkholderia pseudomallei
           1710b]
 gi|134278396|ref|ZP_01765110.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|167924203|ref|ZP_02511294.1| hypothetical protein BpseBC_36953 [Burkholderia pseudomallei
           BCC215]
 gi|217422136|ref|ZP_03453639.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|254185740|ref|ZP_04892258.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254263509|ref|ZP_04954374.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|76581925|gb|ABA51399.1| ompA family protein [Burkholderia pseudomallei 1710b]
 gi|134250180|gb|EBA50260.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|157933426|gb|EDO89096.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|217394367|gb|EEC34386.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|254214511|gb|EET03896.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 438

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 340 ALNRVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423


>gi|325281257|ref|YP_004253799.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324313066|gb|ADY33619.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 276

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 13/239 (5%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           +  ++  +G    +    + +        ++  +  ++          +  K   L K  
Sbjct: 37  ERVLNRNLGQQKDEIAKLKQQITDLMSDTTRLGQAIRDYRKSLYSNLSEQEKLNMLLKEK 96

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            ++       ++K +     +  RLQ L   +   L G  +D +            I ++
Sbjct: 97  MEKLAEREATINKLQAEVDAQNARLQSLLNSVKDALLGFSSDEL----TVTEKNGKIYVA 152

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNW 285
           + D     +F+  S+    +    L K+ EVL       + I GHTD  P + +  +DNW
Sbjct: 153 MSD---KLLFESGSAQVNKQGKEALGKLAEVLKKQHDIDVFIEGHTDNKPIKTVQFKDNW 209

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            LS+ RA S  ++L K  GV+  +I    G         ++     + NRR +I++  +
Sbjct: 210 DLSVVRATSVVRILTKDYGVNPLQILP-CGRGEFMPVDNNESVEGRAHNRRTEIIMAPK 267


>gi|260467043|ref|ZP_05813223.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029152|gb|EEW30448.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 343

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 23/323 (7%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
             T+L+A   ++ +         + I    +     L +    +         ++Q+K D
Sbjct: 23  LSTLLLAIMFLLTVFVLAQFLLGREISGK-DTALSRLNSQINELTQLLALERSTAQDKDD 81

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
              +   + ++ + +     Q         +      +       N      +    +  
Sbjct: 82  SLANLQASLSAAEAEKSRLEQLLAQGAGAGDAANQRAAALGGELDNQRQISQQALSQVEI 141

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212
                 ++ K+       L+  +        ++ DL ++++  L+  V       +D   
Sbjct: 142 LNQQIAALRKQIGALEDALNVSETRDRDSNTKIADLGRRLNVALAQRVQELNRYRSDFFG 201

Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI 266
           +       R  I I       ++  +F   S +       E   +   I E+       I
Sbjct: 202 RLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMKKLADAIIELQKEIPPEI 261

Query: 267 S----IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +    + GHTD  P       RDNW LS  R+ S  + L+++GV  +R+   +GF   + 
Sbjct: 262 NWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIENGVPANRLVA-AGFGEFQP 320

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
              +D   +   NRRI++ + +R
Sbjct: 321 LDPADTEEARNKNRRIELKLTER 343


>gi|237508587|ref|ZP_04521302.1| type IV/VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
 gi|235000792|gb|EEP50216.1| type IV/VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
          Length = 439

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 301 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 358

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 359 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 417

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 418 VAENATPAGRSRNRRVEIAV 437


>gi|154490982|ref|ZP_02030923.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC
           43184]
 gi|154088730|gb|EDN87774.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC
           43184]
          Length = 278

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 16/210 (7%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM---KRKKRLQDLA 196
           +   KN     S    ++ +   L   ++++ N           L      + +R+Q+L 
Sbjct: 67  TRMGKNIRNYQSMLNTNMTEQEKLNSLLSQKMNELDERERTINELQDMINAQTERVQNLL 126

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
             +   L G  +D +            + +++ D     +F+  S+         L K+ 
Sbjct: 127 NSVKDALLGFSSDEL----TVREKDGKVYVAMSD---KLLFESGSARVDKRGKEALAKLA 179

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
           EVL   ++  + I GHTD+ P      +DNW LS+ RA S  ++L K  GV   +I +  
Sbjct: 180 EVLNKQSDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVKPLQI-QPC 238

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341
           G         ++     + NRR +I++  +
Sbjct: 239 GRGEFMPVADNETADGRAKNRRTEIIMAPK 268


>gi|307699909|ref|ZP_07636960.1| OmpA family protein [Mobiluncus mulieris FB024-16]
 gi|307614947|gb|EFN94165.1| OmpA family protein [Mobiluncus mulieris FB024-16]
          Length = 325

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 7/205 (3%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS    + L   S  G     ++ +        +        E+I AM     L  + ++
Sbjct: 59  QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   L+       ++      T  G+++ ++       F    +   P    VL  +  V
Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173

Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  + E ++I G+ D +P +      N+ L+  RA      L   GV   ++  IS  A 
Sbjct: 174 LTGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233

Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341
           H+ ++ +     S NRR+DI++  R
Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258


>gi|217423043|ref|ZP_03454545.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|254182960|ref|ZP_04889553.1| OmpA family protein [Burkholderia pseudomallei 1655]
 gi|254264206|ref|ZP_04955071.1| SciP protein [Burkholderia pseudomallei 1710a]
 gi|254299754|ref|ZP_04967203.1| SciP protein [Burkholderia pseudomallei 406e]
 gi|157809358|gb|EDO86528.1| SciP protein [Burkholderia pseudomallei 406e]
 gi|184213494|gb|EDU10537.1| OmpA family protein [Burkholderia pseudomallei 1655]
 gi|217393951|gb|EEC33971.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|254215208|gb|EET04593.1| SciP protein [Burkholderia pseudomallei 1710a]
          Length = 439

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 301 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 358

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 359 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 417

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 418 VAENATPAGRSRNRRVEIAV 437


>gi|83593142|ref|YP_426894.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83576056|gb|ABC22607.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 19/189 (10%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            S++  +   +    +E I + +  K +++L ++    +  L  +++   V     + G+
Sbjct: 44  SSVDLVQYEKVKAGIQESIGSREVTKPIEELRQQTGDVIKSLQVEDV---VGLGQDQQGL 100

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA 281
           +I      ++  ++  S+   P  I VL+++   L         I I+GHTD  P     
Sbjct: 101 VIEF---ASSAFYEPGSADIRPTAIPVLEQVIATLNEPRYQGFQIEIQGHTDDIPINTAQ 157

Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSA-------NR 332
              NW LS  RA    + ++  GV+++R+  I+ +A    K+ +  P   A       NR
Sbjct: 158 YPSNWELSGARATRVLRFMLDQGVAKERVLAIA-YADVAPKVPNRTPEGQAIPLNQELNR 216

Query: 333 RIDILVEDR 341
           RI + V  R
Sbjct: 217 RIAVRVFPR 225



 Score = 39.1 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 18/222 (8%)

Query: 20  KVAIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNL 76
                D P +    +W I +AD   +L+ FF ++  I++ D    + +        G   
Sbjct: 7   GGRHHDAPEHDDTDAWLISFADMSCLLLGFFAMLASISSVDLVQYEKVKAGIQESIGSRE 66

Query: 77  MTASK--------------GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           +T                  + D     +      I+ +        S D++  +    +
Sbjct: 67  VTKPIEELRQQTGDVIKSLQVEDVVGLGQDQQGLVIEFASSAFYEPGSADIRPTAIPVLE 126

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
           Q     N   Y     + +   + +  ++ +     + +   ++           ++KE+
Sbjct: 127 QVIATLNEPRYQGFQIEIQGHTDDIPINTAQYPSNWELSGA-RATRVLRFMLDQGVAKER 185

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +LA+        +  +     +  +   + + +        I
Sbjct: 186 VLAIAYADVAPKVPNRTPEGQAIPLNQELNRRIAVRVFPRAI 227


>gi|167899688|ref|ZP_02487089.1| hypothetical protein Bpse7_38555 [Burkholderia pseudomallei 7894]
          Length = 407

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F   S+  +   + VL ++ +
Sbjct: 255 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 308

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       +RI+   G  
Sbjct: 309 ALNRVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 367

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 368 TLDPVAPNDSPANRARNRRVEITLM 392


>gi|53721140|ref|YP_110125.1| hypothetical protein BPSS0102 [Burkholderia pseudomallei K96243]
 gi|167818184|ref|ZP_02449864.1| hypothetical protein Bpse9_23811 [Burkholderia pseudomallei 91]
 gi|167896649|ref|ZP_02484051.1| hypothetical protein Bpse7_23090 [Burkholderia pseudomallei 7894]
 gi|167921273|ref|ZP_02508364.1| hypothetical protein BpseBC_22178 [Burkholderia pseudomallei
           BCC215]
 gi|52211554|emb|CAH37548.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
          Length = 433

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|126444974|ref|YP_001061168.1| hypothetical protein BURPS668_A0162 [Burkholderia pseudomallei 668]
 gi|126224465|gb|ABN87970.1| SciP protein [Burkholderia pseudomallei 668]
          Length = 433

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  LPE   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|304393260|ref|ZP_07375188.1| OmpA/MotB domain protein [Ahrensia sp. R2A130]
 gi|303294267|gb|EFL88639.1| OmpA/MotB domain protein [Ahrensia sp. R2A130]
          Length = 343

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 113/345 (32%), Gaps = 26/345 (7%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           + +    D+ +    +    +  +  +M    V  +            +   N     + 
Sbjct: 4   RSRRRGSDSVSYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSQEISGKDTVLNRLNSQIN 63

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             ++ +  EQ+  +        LS      ++         +                + 
Sbjct: 64  ELTQLLALEQSAKQDLEDQIATLSSGLSTAESERSRLQELLSSGSGVAEEAETRASGLSE 123

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              E  K S    S+      + + L K I   E+      ++++  + K    + DL +
Sbjct: 124 TLDEERKVSRRAMSQVALLNQQISALRKQIASLEDALDVSETRDRESSTK----IADLGR 179

Query: 198 KISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +++  L+  V +           ++ +L       ++      ++  +F    +      
Sbjct: 180 RLNVALAQRVQELNRFRSDFFGRLRDILGARDDIRVVGDRFVFQSEVLFPSGGATLNEAG 239

Query: 249 IVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298
           +  + K+   L             V+ + GHTD  P     R  DNW LS  RA S  + 
Sbjct: 240 LGEMAKLANALIELGEEIPDEIDWVLRVDGHTDNIPLSGSGRYADNWELSSGRATSVVKY 299

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           L+  GV  +R+   +GF   +     D   +   NRRI++ + ++
Sbjct: 300 LITQGVPAERLVA-AGFGEFQPLEDVDTQEARDRNRRIELKLTEK 343


>gi|218662295|ref|ZP_03518225.1| hypothetical protein RetlI_23953 [Rhizobium etli IE4771]
          Length = 223

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +Q +  + +L++     + +        ++              +        RL    
Sbjct: 6   DEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVAL 65

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQK 254
                 L+   +D   +     + R  I I       ++  +F    +   PE    + K
Sbjct: 66  AARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAK 125

Query: 255 IGEVLAHSTEVI--------SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304
           +   L    + I         + GHTD  P       RDNW LS  RA S  + L+  GV
Sbjct: 126 LATALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGV 185

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             DR+   +GF   +     D   +   NRRI++ + ++
Sbjct: 186 PADRLVA-AGFGEFQPIAPGDTPEARATNRRIELKLTEK 223


>gi|198276042|ref|ZP_03208573.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135]
 gi|198271671|gb|EDY95941.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135]
          Length = 280

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 24/238 (10%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N +D   G   Q +Q    +           S +       ++  G+ L +  + EK+I 
Sbjct: 52  NEMDKMRGQIAQLQQDTSRKGTSIRHYQQLLSSNMNEQEKLNALLGEKLKELDEREKTIQ 111

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           + ++              ++  ++Q+L   +   L G  +D +            + +++
Sbjct: 112 ELQSMI-----------DQQNAQVQNLLNSVKDALLGFSSDEL----TVREQNGKVYVAM 156

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWR 286
            D     +F   S+         L K+ EVL   TE  + I GHTD  P      +DNW 
Sbjct: 157 SD---KLLFQSGSAKLDKRGEEALGKLAEVLNKQTEIDVCIEGHTDNKPIHTAQFKDNWD 213

Query: 287 LSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LS+ RA S  ++L  K  V+  +I + SG         ++     + NRR +I++  +
Sbjct: 214 LSVIRATSVVRILIEKYKVNPLQI-QPSGRGEFMPVADNETAEGRAKNRRTEIIMSPK 270


>gi|186470894|ref|YP_001862212.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           phymatum STM815]
 gi|184197203|gb|ACC75166.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           phymatum STM815]
          Length = 447

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R   MF    +        ++ KI   +A     +S+ G+TD  P R+     N  LS +
Sbjct: 333 RGDSMFPPGGASVKATMGPLIAKIAAEIARVPGKVSVLGYTDNVPIRSRQFASNDALSEE 392

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           RA    Q+L  +GV   R+  +  G A      ++    + NRR++I V
Sbjct: 393 RATQVMQILQAAGVPASRLEAVGKGDADPVADNSTPQGRAQNRRVEITV 441


>gi|330962099|gb|EGH62359.1| hypothetical protein PMA4326_26442 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 437

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+G +AD+I  G +       +  S++  R   +F   S+  + +   ++ +I + +  
Sbjct: 295 RLAGFLADDIKAGKV--AVEDAVDRSVVTIRGDELFASGSATIVDDFQPLMLRIADAIRK 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + I GH+D  P   +    NW LS  RA    ++L        R +   G +    
Sbjct: 353 VKGDVRITGHSDNRPIATLRFPSNWALSQARAEQVLRILAAKTGQPQRFTA-EGRSDTEP 411

Query: 321 K--IASDPMNSANRRIDILVE 339
               A+    + NRR++I V 
Sbjct: 412 LGSNATAEGRAKNRRVEITVL 432


>gi|116253762|ref|YP_769600.1| hypothetical protein RL4023 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258410|emb|CAK09513.1| putative chemotaxis protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 343

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 108/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    + T +    +    +  +  +M    V  +            ++  +     +  
Sbjct: 5   RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLSRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+   +    +  +L       +          N     Q            +
Sbjct: 65  LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLNAGSGGQDAAQKRIGSMTQE 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    S+      +   L + I   E        K+++   K       L   
Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRRQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184

Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++     L+   +D   +     + R  I I       ++  +F    +   PE    + 
Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMA 244

Query: 254 KIG--------EVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303
           K+         E+      V+ + GHTD  P       RDNW LS  RA S  + L+  G
Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V  DR+   +GF   +     D  ++   NRRI++ + ++
Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARSTNRRIELKLTEK 343


>gi|257457774|ref|ZP_05622935.1| OmpA family protein [Treponema vincentii ATCC 35580]
 gi|257444824|gb|EEV19906.1| OmpA family protein [Treponema vincentii ATCC 35580]
          Length = 434

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +KI   L   + D  +     E T  GI IS+        F+  S+  LP     L+KI
Sbjct: 293 KEKIVEILDKNIRDMGIPNTTVERTDEGITISL----ENIQFEPDSARLLPAEKEKLKKI 348

Query: 256 GEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           G++LA      + I GHT A   R   R    LS  RA +    L++ GV E       G
Sbjct: 349 GDILASYPDYELLISGHT-ALAGRAEDRQV--LSEQRASAVANYLIELGVREKHHIFTRG 405

Query: 315 FAHHRLKIASDPMN--SANRRIDILVEDR 341
           F   +    +      + NRR++I V ++
Sbjct: 406 FGAEKPIAPNTTEANKARNRRVEITVLEK 434


>gi|326791532|ref|YP_004309353.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427]
 gi|326542296|gb|ADZ84155.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427]
          Length = 248

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 12/243 (4%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           E   K      + +             + +  ++  +E  +   +              +
Sbjct: 5   EDQPKKGAPAYMNTYGDMMTLLLTFFVLLFAMSTVDAEKFEALASSFHASVSIFDGGQTI 64

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRT 222
               N  EN       KE   ++++  +      K    +   V A  I   +  + +  
Sbjct: 65  RIDNNVLENGMSQFPVKETQFSIEQAYQEAQETTKAEQDIKAYVKAKEIDDKITVQKSGD 124

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRN 279
            I+I   D     +FD   +   P  I  L  IGE L         + + GHTD  P   
Sbjct: 125 MIVIRFADI---LLFDTGKADIKPGAIPNLNLIGEKLREYIDQGYHLRVEGHTDNQPIHT 181

Query: 280 IA-RDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                NW LS  RA +  +  L +   +  +IS   G   +      A+    + NRR++
Sbjct: 182 AQFPSNWELSSARAIAVMRFYLEEMDFNPSKISA-EGMGEYHPISSNATSEERAQNRRVE 240

Query: 336 ILV 338
           I +
Sbjct: 241 IKL 243


>gi|293408320|ref|ZP_06652159.1| hypothetical protein ECEG_03255 [Escherichia coli B354]
 gi|291471498|gb|EFF13981.1| hypothetical protein ECEG_03255 [Escherichia coli B354]
          Length = 433

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  E       +     R   MF             V+ K    +A
Sbjct: 295 RLKILLANEIARGLLTVEEDDHHSRVIF---RGDTMFIPGQKTVNDALRPVIDKAAREIA 351

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   G+   RI ++ G     
Sbjct: 352 RVGGAVTVTGHTDSQPIHSAEFPSNQVLSEKRAAEVASLLTSGGIPASRI-RVVGKGDTV 410

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 411 PVADNRTKTGRAQNRRVEILVVE 433


>gi|330500929|ref|YP_004377798.1| hypothetical protein MDS_0015 [Pseudomonas mendocina NK-01]
 gi|328915215|gb|AEB56046.1| hypothetical protein MDS_0015 [Pseudomonas mendocina NK-01]
          Length = 443

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +AD+I    +      G+  S++  R   +F   S+    +   +L +I E +A 
Sbjct: 301 RLATFLADDIRANRV--AVEDGVDRSVVTIRGDELFSSGSASIRDDFQPLLLRIAEAVAK 358

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + I GH+D  P   +    NW LS  RA    Q+L       +R S   G +    
Sbjct: 359 VKGQVRITGHSDNQPIATLRFPSNWALSRARAEEVLQILAARTGQAERFSA-EGLSDTEP 417

Query: 321 KIASDP--MNSANRRIDILVE 339
             ++      + NRR++I V 
Sbjct: 418 LASNATAEGRAKNRRVEITVL 438


>gi|311696932|gb|ADP99805.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 341

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 114/325 (35%), Gaps = 21/325 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           Y D ++ L+   + M ++               +     L      + +     E  S+ 
Sbjct: 18  YVDALSALLMLVIFMLLVYVVSQLYLSQTLSDRDTQLARLNAQLNELSELLGLEENRSEA 77

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             +         NS+  ++ ST ++   Q    +      +   E         + +   
Sbjct: 78  LENQLTSLQERNNSLVGQLESTREQLMRQTAMADAQSERLASMEESIDEKDDISASQQAM 137

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           + + ++   S+ ++       L  ++ +   +++ L+ +++++++ L+  V         
Sbjct: 138 ILRLSNQIASLREQLRQIASALELQEQMTADKEQELEQVSRRLNTLLAERVNQLEQYQSE 197

Query: 217 F-----ETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKI--------GEVL 259
           F     +       + I+  R    +  +F  +S+    E    L K+         ++ 
Sbjct: 198 FFARLRDILAGNENVRIVGDRFLLPSELLFASASAELGEEGRQELDKLAKLLLDVSAKIP 257

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                ++ I GHTD  P        NW LS  RA +  + L   GV E R++  +GF   
Sbjct: 258 EDVDWILRIDGHTDVIPINTPRFPSNWELSTARAVAVVRYLAAQGVPERRMAA-AGFGEF 316

Query: 319 RLKI--ASDPMNSANRRIDILVEDR 341
                  S      NRRI++ + DR
Sbjct: 317 FPVAEGTSPEALQRNRRIELKLTDR 341


>gi|221638712|ref|YP_002524974.1| hypothetical protein RSKD131_0613 [Rhodobacter sphaeroides KD131]
 gi|221159493|gb|ACM00473.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131]
          Length = 525

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 17/257 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             D+     +   +  +  + +  +                    SL    E  +    +
Sbjct: 270 EADQRAAALTAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329

Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             ++ +S+  + N  L  ++ E+    + ++  +   +  +  L+   ++   +      
Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389

Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            R G+ +        +  +F+  S+   PE    +  + + L             +I + 
Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449

Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD  P       RDNW LS  RA S  + + +S G    R++  +GF  +R     D 
Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508

Query: 327 MNSA--NRRIDILVEDR 341
            ++   NRRI++ + +R
Sbjct: 509 ADARAQNRRIELKLTER 525


>gi|332557731|ref|ZP_08412053.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N]
 gi|332275443|gb|EGJ20758.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N]
          Length = 525

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 17/257 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             D+     +   +  +T + +  +                    SL    E  +    +
Sbjct: 270 EADQRAAALAAAREALNTREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329

Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             ++ +S+  + N  L  ++ E+    + ++  +   +  +  L+   ++   +      
Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389

Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            R G+ +        +  +F+  S+   PE    +  + + L             +I + 
Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449

Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD  P       RDNW LS  RA S  + + +S G    R++  +GF  +R     D 
Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508

Query: 327 MNSA--NRRIDILVEDR 341
            ++   NRRI++ + +R
Sbjct: 509 PDARAQNRRIELKLTER 525


>gi|292492806|ref|YP_003528245.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291581401|gb|ADE15858.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 286

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 101/263 (38%), Gaps = 19/263 (7%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLK---IGSTNQKKQYQRLENNIFYLSNSQQ 139
           +     PP +    +   +  E +  +    +   +     K+  QR +       ++++
Sbjct: 24  LIAACAPPTKPVDLERAEAAVEQVQTDPNVTQYVPVRLDEAKEALQRAQVAWEKDESTEE 83

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            EH      R +   +        +  I          L + + L  ++ +    +A+  
Sbjct: 84  VEHLAYLAQRRAAIAEVAAAEKAAQAEIKNLGQERQQMLMEVRELEARQAREQAKMAEAR 143

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L   +A+     +  E T+ G ++++ D     +F+   +   P  +  L ++   L
Sbjct: 144 TRELEQRLAE-----LDAEKTKRGYVLTLGD----ILFEVDRAELTPGGMQNLFRLVTFL 194

Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  + I GHTD++     A  N  LS  RA S Y+ LM +G+S +RI    G+   
Sbjct: 195 KEYPDREVVIEGHTDST---GSAVYNQELSQRRADSVYKFLMNNGISPERIVA-RGYGEA 250

Query: 319 RLKIASDP--MNSANRRIDILVE 339
                +D       NRR++I++ 
Sbjct: 251 YPVAPNDTAAGRQRNRRVEIVIL 273


>gi|331671759|ref|ZP_08372555.1| OmpA family membrane protein [Escherichia coli TA280]
 gi|331070748|gb|EGI42107.1| OmpA family membrane protein [Escherichia coli TA280]
          Length = 438

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  E       +     R   MF             V+ K    +A
Sbjct: 300 RLKILLANEIARGLLTVEEDDHHSRVIF---RGDTMFIPGQKTVNDALRPVIDKAAREIA 356

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   G+   RI ++ G     
Sbjct: 357 RVGGAVTVTGHTDSQPIHSAEFPSNQVLSEKRAAEVASLLTSGGIPASRI-RVVGKGDTV 415

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 416 PVADNRTKTGRAQNRRVEILVVE 438


>gi|13473358|ref|NP_104925.1| hypothetical protein mlr3926 [Mesorhizobium loti MAFF303099]
 gi|14024107|dbj|BAB50711.1| mlr3926 [Mesorhizobium loti MAFF303099]
          Length = 343

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 111/323 (34%), Gaps = 23/323 (7%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
             T+L+A   ++ +         + I    +     L +    +         ++Q+K D
Sbjct: 23  LSTLLLAIMFLLTVFVLAQFLLGREISGK-DTVLARLNSQINELTQLLALERSTAQDKDD 81

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
              +   + ++ + +     Q         +      +  S    +      +    +  
Sbjct: 82  SLANLQASLSAAEAEKSRLEQLLAQGAGAGDQANQRAAALSGELDSQRQISQQALSQVEI 141

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212
                 ++ K+       L+  +        ++ DL ++++  L+  V       +D   
Sbjct: 142 LNQQIAALRKQIGALEDALNVSEARDRDSNTKIADLGRRLNVALAQRVQELNRYRSDFFG 201

Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI 266
           +       R  I I       ++  +F   S +       E   +   I E+       I
Sbjct: 202 RLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMKKLADAIIELQKEIPPEI 261

Query: 267 S----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +    + GHTD  P     R  DNW LS  R+ S  + L+++GV  +R+   +GF   + 
Sbjct: 262 NWVLRVDGHTDNKPLSGTGRFRDNWELSTARSTSVVKFLIENGVPANRLVA-AGFGEFQP 320

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
              +D   +   NRRI++ + +R
Sbjct: 321 LDPADTDEARNKNRRIELKLTER 343


>gi|325107821|ref|YP_004268889.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324968089|gb|ADY58867.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 280

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA---RDNWRLSL 289
           +F   S+        +L+ +  ++         + + GHTD  P  +       NW LS 
Sbjct: 155 LFSSGSAELRDTAKPLLRDLAAIMNDGDARGLNLLVVGHTDDQPIASARGTHPTNWHLST 214

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
           +RA S    L  SG+SE R+   +G++ ++  +   +D     NRR++I V 
Sbjct: 215 NRANSVVLALKNSGISEHRMGA-AGYSLNQPLVPNTNDHSRQRNRRVEIFVL 265


>gi|124010248|ref|ZP_01694902.1| chemotaxis protein MotB [Microscilla marina ATCC 23134]
 gi|123983684|gb|EAY24121.1| chemotaxis protein MotB [Microscilla marina ATCC 23134]
          Length = 286

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           Q  + KN  TR  ++ +DL +     +  +      L     E+   ++RK++L    + 
Sbjct: 54  QVANLKNDTTRLGKELRDLNRKYASLRESSNLTTTQLRKQLNERQKELQRKEQLLANREA 113

Query: 199 ISSTLSGLV--ADNIVKGVLFET-------TRTGILIS------IIDQRNTPMFDKSSSI 243
           +   L   +   DN++K +L +            + ++       +      +F    + 
Sbjct: 114 VVQKLKAAIDRKDNLLKNLLGKVRNALKNFNPDELTVTSKNGKIYVSLAEKLLFKSGRTD 173

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301
              +    L K+ EVL  + +  I I GHTD+ P      RDNW LS+ RA S  ++L+K
Sbjct: 174 VDRKGKKALGKLAEVLNKNQDIDIQIEGHTDSIPITTARFRDNWDLSVLRATSIVRILVK 233

Query: 302 SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
               + +    +G           +    + NRRI+I++  +
Sbjct: 234 DYEVDPKTLTPAGRGETTPVASNKNKEGRAKNRRIEIVLSPK 275


>gi|289665938|ref|ZP_06487519.1| OmpA family membrane protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 438

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           + +    +  L+ L+A     G+L   T  G   S +   +  MF   S+    +   +L
Sbjct: 287 EAVRPATTPALAPLLAAEQRAGLLTVQT-EGDGRSTVRLASASMFPSGSAELDADQTSLL 345

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +++   L      + + GHTD  P R+   +DN+ LS  RA S   VL  +G+ + R  +
Sbjct: 346 ERVAAALEQVPGRVVVVGHTDDQPVRSLSFKDNFALSARRAESVGAVL-AAGLRDRRRVQ 404

Query: 312 ISGFAHHRL--KIASDP-MNSANRRIDILVED 340
            SG    +        P   + NRR++IL+  
Sbjct: 405 TSGAGDSQPIALPPQLPGNRARNRRVEILLIP 436


>gi|289806378|ref|ZP_06537007.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 130

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LE 128
            +
Sbjct: 121 GD 122


>gi|260432828|ref|ZP_05786799.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416656|gb|EEX09915.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 580

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 17/298 (5%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           +D +  +E            A       +      +  +  L+ ++ I++ +        
Sbjct: 285 EDLRAQLEAALAARSGAEAEALAQRSLVEERDSLLAVARETLAAEKEISEKAQRQTALLN 344

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q    +     +  L +  +  + +  +   +                 +         
Sbjct: 345 QQIAALRGQLGALQALLDDYKERNAEAEVQIQTLGQDLNAALARAASEERRRRLLEEAER 404

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPM 236
            + +  A K   + Q LAK+ +  L    ++   +       + G+ I        +  +
Sbjct: 405 IRLEAEAEKLAGQNQQLAKQ-AEDLQRYRSEFFGRLRDVLGDQEGVRIEGDRFVFSSEVL 463

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI--ARDNWR 286
           FD  S++   E    + K+ E+L             VI + GHTD  P       RDNW 
Sbjct: 464 FDPGSAVLSDEGKREIAKVAEILRSVAAEIPPELNWVIRVDGHTDNIPVSGAGRYRDNWE 523

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LS  RA S  + +++  G+  +R++  +GF   +    +D     + NRRI++ + +R
Sbjct: 524 LSQGRALSVVRYMVEELGIPPNRLAA-NGFGEFQPVDTADTPEARAKNRRIELKLTER 580


>gi|167572001|ref|ZP_02364875.1| hypothetical protein BoklC_19324 [Burkholderia oklahomensis C6786]
          Length = 439

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F+  S+  +   + VL ++ +
Sbjct: 287 RVAKFLEPEIAAGL-----VTVRDEADRSVIV-LRGDGLFESGSTSVIDRYMPVLIRVAD 340

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P R      NW LS +RA +   ++       DRI+   G  
Sbjct: 341 ALNKVQGSVRVSGYTDDAPVRTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRG 399

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 400 TLDPVAPNDSPANRARNRRVEITLM 424


>gi|126734135|ref|ZP_01749882.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2]
 gi|126717001|gb|EBA13865.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2]
          Length = 536

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +L +  D E  +  E        +  ++++ +R++R  + A++I             + +
Sbjct: 325 NLAEEADREAQVQIETLGAQLNTALARVVSEERQRRTLEEAERIRLEAEAERLAAEAEDL 384

Query: 216 -LFETTRTGILISIIDQRNT-------------PMFDKSSSIPLPETIVVLQKIGEVLAH 261
             F++T  G L  I++ ++               +F   S+   P     +  I ++L  
Sbjct: 385 ARFKSTFFGELRQILEGQDRIRVEGDRFIFNSEVLFQPGSATLSPAGEAEIANIADILRS 444

Query: 262 S--------TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310
                      VI + GHTD  P  + +R  DNW LS  RA S  + +    G+   R++
Sbjct: 445 IAADIPEGIDWVIRVDGHTDNVPIGSNSRFADNWELSQARALSVVRFMSEDLGIDPRRLA 504

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             +GF   +     +   +   NRRI++ + +R
Sbjct: 505 A-NGFGEFQPLNPLNTAEARAQNRRIELKLTER 536


>gi|218887954|ref|YP_002437275.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758908|gb|ACL09807.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 248

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----KKRLQDLAKKISSTLSGLV 207
           EKG      + +++++   E   +  L  E + ++      +++L +   ++ + +    
Sbjct: 46  EKGTFSESISSVQQALGVGEGARIVRLKDENVGSVVDEVLYRRQLVEAQNRLFAEVRLFA 105

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266
               +  +L  ++  G  I++       +F+  S     E   +LQ + ++     +  I
Sbjct: 106 QSRGMSDILTGSSEDG-KITLN-MPAGVLFEPGSDTITAEGRKLLQHMYDLFVRHPDQDI 163

Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           ++RG TD+SP  +  R  DNW LS  RA +  + L+  G++  RI+  +G A       +
Sbjct: 164 NVRGFTDSSPTPSGGRFRDNWDLSSSRAINVLRTLLDMGIAPHRITA-TGLADMNPLFPN 222

Query: 325 --DPMNSANRRIDILVEDR 341
             +   + NRR++ ++E +
Sbjct: 223 TTEENRARNRRVEFVLEKQ 241


>gi|237716994|ref|ZP_04547475.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405762|ref|ZP_06082312.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229442977|gb|EEO48768.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356637|gb|EEZ05727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 280

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N      +Q S   KN L   ++ G  + +   +      E+      LS++K    +R+
Sbjct: 43  NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102

Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241
           + + +L   I +    +  +  N+   +L  +T   + +   D +      +  +F   S
Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
           +         L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L
Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +K+  V+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 265


>gi|197336843|ref|YP_002157778.1| chemotaxis MotB protein [Vibrio fischeri MJ11]
 gi|197314095|gb|ACH63544.1| chemotaxis MotB protein [Vibrio fischeri MJ11]
          Length = 213

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +++++ +  +V    +  V+      GI I + D  N  ++D  S+   PE   ++ + 
Sbjct: 64  MQELTADIQEIVEQKNLDSVVVTAVTDGIRIDL-DSEN--LYDSGSASLKPEGKALISEF 120

Query: 256 GEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            E +         I + GH+D  P        NW LS  RA    + L+K  V + ++  
Sbjct: 121 AEAMKEVDLNGRSIIVEGHSDDLPIHTKQFDSNWELSGARAIEVTKQLIKFNVDKSQLRA 180

Query: 312 ISGFAHHRLKI----ASDPMNSANRRIDILVED 340
           ++ +A  + +       +     NRR+ I ++ 
Sbjct: 181 VA-YADAQPRADKALPIEQQRQLNRRVVIYIKR 212



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 23/35 (65%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + Y+D +T+L+AFF+++  ++  ++   + ++ 
Sbjct: 16 WMMTYSDAITLLLAFFVLIVAVSQVNEGKLEELKD 50


>gi|163755499|ref|ZP_02162618.1| putative flagellar motor protein MotB [Kordia algicida OT-1]
 gi|161324412|gb|EDP95742.1| putative flagellar motor protein MotB [Kordia algicida OT-1]
          Length = 286

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 14/219 (6%)

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLPPLSKEKILAMKRKKR 191
             S S ++E  ++ ++   +  +DL ++T D+     K        L   K   +K  + 
Sbjct: 52  KASASARAEALEDRVSDLKKTNQDLIQNTKDMTVLTTKGAENLEKSLESMKEKDLKITRL 111

Query: 192 LQDLAKKISSTLSGLVADNIVKGV-----LFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              L KK S TL+ + +     G+          +  + ISI D     +F   S     
Sbjct: 112 QDALNKKDSVTLAIVSSLKKAVGIDDPDIEINVEKGVVFISIAD---KLLFKSGSYNVTD 168

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304
           +  VVL K+ +V+         + GHTD  P+ + +  DNW LS+ R+ S  +VL + GV
Sbjct: 169 KAKVVLGKVAKVVNSKPNFECMVEGHTDNVPYNKGVLIDNWDLSVKRSTSIIRVLQELGV 228

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  ++   +G +++   + +D     + NRR  I+V  +
Sbjct: 229 NPGQLIA-AGRSYYVPLVENDTPENRATNRRTRIVVLPK 266


>gi|86359103|ref|YP_470995.1| hypothetical protein RHE_CH03512 [Rhizobium etli CFN 42]
 gi|86283205|gb|ABC92268.1| probable outer membrane protein [Rhizobium etli CFN 42]
          Length = 343

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    + T +    +    +  +  +M    V  +            ++  N     +  
Sbjct: 5   RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLNRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+   +       +L       +          N     Q            +
Sbjct: 65  LTQLLALEKGSNQDLQDAVANLQASLATAEGDRSRLQALLNAGSGGQDAAQKRIGAMTQE 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    S+      +   L   I   E        K+++   K       L   
Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184

Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++     L+   +D   +     + R  I I       ++  +F    +   P+    + 
Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPDGQTEMA 244

Query: 254 KIG--------EVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303
           K+         E+      V+ + GHTD  P       RDNW LS +RA S  + L+  G
Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSERAISVVKFLIGQG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V  DR+   +GF   +     D  ++   NRRI++ + ++
Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARATNRRIELKLTEK 343


>gi|237722039|ref|ZP_04552520.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298483221|ref|ZP_07001400.1| flagellar motor protein MotB [Bacteroides sp. D22]
 gi|229448908|gb|EEO54699.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298270538|gb|EFI12120.1| flagellar motor protein MotB [Bacteroides sp. D22]
          Length = 280

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N      +Q S   KN L   ++ G  + +   +      E+      LS++K    +R+
Sbjct: 43  NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102

Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241
           + + +L   I +    +  +  N+   +L  +T   + +   D +      +  +F   S
Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
           +         L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L
Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +K+  V+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 265


>gi|325927851|ref|ZP_08189076.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
 gi|325541841|gb|EGD13358.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
          Length = 368

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G   S +   +  MF   S+    +   +L+++   L      + + GHTD  P
Sbjct: 240 LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 299

Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332
            R++  +DN+ LS  RA S   VL  +G+ + R  + SG    +        P   + NR
Sbjct: 300 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 358

Query: 333 RIDILVED 340
           R++IL+  
Sbjct: 359 RVEILLIP 366


>gi|167908679|ref|ZP_02495884.1| hypothetical protein BpseN_41039 [Burkholderia pseudomallei NCTC
           13177]
          Length = 395

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 179 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 238

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 239 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 296

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 297 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 356

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 357 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 393


>gi|126461734|ref|YP_001042848.1| hypothetical protein Rsph17029_0965 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103398|gb|ABN76076.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 525

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 17/257 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             D+     +   +  +  + +  +                    SL    E  +    +
Sbjct: 270 EADQRAAALAAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329

Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             ++ +S+  + N  L  ++ E+    + ++  +   +  +  L+   ++   +      
Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389

Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            R G+ +        +  +F+  S+   PE    +  + + L             +I + 
Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449

Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD  P       RDNW LS  RA S  + + +S G    R++  +GF  +R     D 
Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508

Query: 327 MNSA--NRRIDILVEDR 341
            ++   NRRI++ + +R
Sbjct: 509 PDARAQNRRIELKLTER 525


>gi|167564829|ref|ZP_02357745.1| hypothetical protein BoklE_19905 [Burkholderia oklahomensis EO147]
          Length = 439

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +++  L   +A  +                I+  R   +F+  S+  +   + VL ++ +
Sbjct: 287 RVAKFLEPEIAAGL-----VTVRDEADRSVIV-LRGDGLFESGSTSVIDRYMPVLIRVAD 340

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      + + G+TD +P        NW LS +RA +   ++       DRI+   G  
Sbjct: 341 ALNKVQGSVRVSGYTDDAPVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRG 399

Query: 317 HHRLKIASD--PMNSANRRIDILVE 339
                  +D     + NRR++I + 
Sbjct: 400 TLDPVAPNDSPANRARNRRVEITLM 424


>gi|59713370|ref|YP_206145.1| flagellar motor protein MotB2 [Vibrio fischeri ES114]
 gi|59481618|gb|AAW87257.1| flagellar motor protein MotB2 [Vibrio fischeri ES114]
          Length = 213

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +++++ +  +V    +  V+      GI I   D  +  ++D  S+   PE   ++ + 
Sbjct: 64  MQELTADIQEIVEQKNLDSVVVTAVTDGIRI---DLNSENLYDSGSASLKPEGKALISEF 120

Query: 256 GEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            E +         I + GH+D  P        NW LS  RA    + L+K  V + ++  
Sbjct: 121 AEAMKEVDLNGRSIIVEGHSDDLPIHTKQFDSNWELSGARAIEVTKQLIKFNVDKSQLRA 180

Query: 312 ISGFAHHRLKI----ASDPMNSANRRIDILVED 340
           ++ +A  + +       +     NRR+ I ++ 
Sbjct: 181 VA-YADAQPRADKALPIEQQRQLNRRVVIYIKR 212



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 23/35 (65%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          W + Y+D +T+L+AFF+++  ++  ++   + ++ 
Sbjct: 16 WMMTYSDAITLLLAFFVLIVAVSQVNEGKLEELKD 50


>gi|260172785|ref|ZP_05759197.1| putative flagellar motor protein MotB [Bacteroides sp. D2]
          Length = 256

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N+Q S   KN L   ++ G  + +   +      E+      LS++K    +R++ + +L
Sbjct: 25  NAQMSAQIKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 84

Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247
              I +    +  +  N+   +L  +T   + +   D +      +  +F   S+     
Sbjct: 85  QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 143

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304
               L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K+  V
Sbjct: 144 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 203

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  +I + SG   +     ++     S NRR +I++  +
Sbjct: 204 NPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 241


>gi|167826676|ref|ZP_02458147.1| hypothetical protein Bpseu9_23575 [Burkholderia pseudomallei 9]
          Length = 390

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 174 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 233

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 234 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 291

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 292 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 351

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 352 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 388


>gi|323697841|ref|ZP_08109753.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457773|gb|EGB13638.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 254

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 7/225 (3%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
                 L      L +  Q    K      S KG    K          + N       +
Sbjct: 30  ADMVTLLLCFFVLLLSFAQQSEEKFRDALGSLKGAFGVKEVRAVSDEMAQFNTSSEATKE 89

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                   ++ L  +  +I S +  L  + + +G      R G++       +  +F   
Sbjct: 90  MASSISHDQRLLLSVVMRIKSMVENL-DNKLKEGAGVNADRDGVV---FRTSSAALFQPF 145

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299
           ++   P+   +L  + +VL      + +RGHTD  P        NW LS  RA  A   +
Sbjct: 146 TAELRPDATQILDGVIKVLKDYKLNLVVRGHTDDRPIHTAKYPSNWELSAARAAVALDYI 205

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
           +  G  E   +K  G+A  R ++ +D       N+R++  +   Q
Sbjct: 206 VNKGGIEINRAKAVGYADTRPEVPNDTEADRLRNQRVEFYIHMPQ 250


>gi|53721204|ref|YP_110189.1| hypothetical protein BPSS0168 [Burkholderia pseudomallei K96243]
 gi|76819105|ref|YP_336847.1| hypothetical protein BURPS1710b_A1690 [Burkholderia pseudomallei
           1710b]
 gi|126443128|ref|YP_001061334.1| hypothetical protein BURPS668_A0328 [Burkholderia pseudomallei 668]
 gi|134280864|ref|ZP_01767574.1| OmpA domain protein [Burkholderia pseudomallei 305]
 gi|217423202|ref|ZP_03454704.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|226198699|ref|ZP_03794263.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254263222|ref|ZP_04954087.1| OmpA domain protein [Burkholderia pseudomallei 1710a]
 gi|52211618|emb|CAH37613.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
 gi|76583578|gb|ABA53052.1| OmpA domain protein [Burkholderia pseudomallei 1710b]
 gi|126222619|gb|ABN86124.1| OmpA domain protein [Burkholderia pseudomallei 668]
 gi|134247886|gb|EBA47970.1| OmpA domain protein [Burkholderia pseudomallei 305]
 gi|217394110|gb|EEC34130.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|225929139|gb|EEH25162.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254214224|gb|EET03609.1| OmpA domain protein [Burkholderia pseudomallei 1710a]
          Length = 421

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419


>gi|152990729|ref|YP_001356451.1| flagellar motor protein MotB [Nitratiruptor sp. SB155-2]
 gi|151422590|dbj|BAF70094.1| flagellar motor protein MotB [Nitratiruptor sp. SB155-2]
          Length = 234

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 5/141 (3%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+ + A     G+  E    G  + +    +  +F   S+ P  E      +  +    
Sbjct: 92  ALNEIKALLQKAGIAAEVVDHGNKVLLRVNADN-LFLPGSAYPTKEAAKYFMEFCKRFKE 150

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           S   I+I G+TD  P      R+NW LS+ RA +  ++ +  G    R     G   +  
Sbjct: 151 SGFRINIIGYTDNQPIHTAEFRNNWELSVYRAINILRLFVSCGYD-KRFLTAEGRGEYDP 209

Query: 321 KIASDP--MNSANRRIDILVE 339
              ++     + NRR++ +V+
Sbjct: 210 IAPNNTPQGRAKNRRVEFVVD 230



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75
          + KK   +     +  W + + D M++L+ FF++++ ++    +   ++I      FG  
Sbjct: 1  MAKKKKQECAS--IPGWLVSFGDLMSLLLTFFILLYSMSTVSVEKFYQSIRGLTEAFGGR 58

Query: 76 LMT 78
           MT
Sbjct: 59 SMT 61


>gi|254511081|ref|ZP_05123148.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11]
 gi|221534792|gb|EEE37780.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11]
          Length = 559

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 17/257 (6%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L+ ++ I+  +         Q    +    ++  L +  +  +    +   +        
Sbjct: 305 LASEQEISTEAQRQTALLNQQMSALRNQLGSLQALLDDYEDRNAAAEIQIQTLGQDLNAA 364

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
                    +          + +  A +   + Q+L  + +  L    ++   +      
Sbjct: 365 LARAASEERRRRLLEEAERLRLEAEAEELAGQNQELTAQ-AEDLQRYRSEFFGRLRDVLG 423

Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            + G+ I        +  +FD  S++   E    + K+  +L             VI + 
Sbjct: 424 DQEGVRIEGDRFVFSSEVLFDTGSAVLSLEGREEVAKVANILRAVAAEIPEGLNWVIRVD 483

Query: 270 GHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD  P       RDNW LS  RA S  + ++ + G+  +R++  +GF   +    +D 
Sbjct: 484 GHTDNVPLAGSGRYRDNWELSQGRALSVVRYMVDALGIPPNRLAA-NGFGEFQPVNPADT 542

Query: 327 MNSA--NRRIDILVEDR 341
            ++   NRRI++ + +R
Sbjct: 543 PDARAQNRRIELKLTER 559


>gi|167848193|ref|ZP_02473701.1| hypothetical protein BpseB_23171 [Burkholderia pseudomallei B7210]
          Length = 382

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 166 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 225

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 226 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 283

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 284 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 343

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 344 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 380


>gi|167818291|ref|ZP_02449971.1| hypothetical protein Bpse9_24346 [Burkholderia pseudomallei 91]
 gi|167913436|ref|ZP_02500527.1| hypothetical protein Bpse112_23310 [Burkholderia pseudomallei 112]
          Length = 393

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 177 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 236

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 237 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 294

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 295 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 354

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 355 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 391


>gi|209550830|ref|YP_002282747.1| hypothetical protein Rleg2_3254 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536586|gb|ACI56521.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 343

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    + T +    +    +  +  +M    V  +            ++  +     +  
Sbjct: 5   RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLSRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E+   +    +  +L       +          N     Q            +
Sbjct: 65  LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLNAGSGGQDAAQKRIGTMTQE 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
             E  + S    S+      +   L   I   E        K+++   K       L   
Sbjct: 125 LDEQNQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184

Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++     L+   +D   +     + R  I I       ++  +F    +   PE    + 
Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMG 244

Query: 254 KIG--------EVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303
           K+         E+      V+ + GHTD  P       RDNW LS  RA S  + L+  G
Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSARAISVVKFLIAQG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V  DR+   +GF   +     +  ++   NRRI++ + ++
Sbjct: 305 VPADRLVA-AGFGEFQPIAPGETPDARATNRRIELKLTEK 343


>gi|213864488|ref|ZP_03386743.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 102

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 270 GHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P+ N      NW LS DRA ++ + L+  G+   ++ ++ G A         P 
Sbjct: 1   GHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPD 60

Query: 328 NSANRRIDILVEDRQG 343
           ++ NRRI +LV ++Q 
Sbjct: 61  DAINRRISLLVLNKQA 76


>gi|218885922|ref|YP_002435243.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756876|gb|ACL07775.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 244

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 82/191 (42%), Gaps = 8/191 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  ++    K      +      S   + +++ ++++ +  +   S +   +    V+G+
Sbjct: 54  DSVRTVFGGKDKELSTSAVRSDESSALLESVRLQRQIIEAQRNTYSEMRTYLNKTGVEGI 113

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD- 273
           +      G++   I      MF    +   P+    L+ + ++      + I+IRG TD 
Sbjct: 114 IGAVFDEGVITLRI--PAEVMFAPGETDLSPQAERYLKPLADLFVRKKDQSINIRGFTDD 171

Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330
           + P +N   RDNW LS  RA S  +  +K+G+   R++  +G         +  +   + 
Sbjct: 172 SQPGQNSRFRDNWELSSLRAVSVLRYFLKAGIDSKRLTA-TGLGELDPLFPNTTEENRAR 230

Query: 331 NRRIDILVEDR 341
           NRR++ ++E R
Sbjct: 231 NRRVEFMLERR 241


>gi|56698003|ref|YP_168374.1| hypothetical protein SPO3171 [Ruegeria pomeroyi DSS-3]
 gi|56679740|gb|AAV96406.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 766

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 112/308 (36%), Gaps = 19/308 (6%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
            ++     +  +A         + L+ A     + ++   R      + +      + ++
Sbjct: 460 LLMALESLERAQAAASDNEVLQRRLLAALDAQTEAESSAARQRSLAEERAALLAQARAAL 519

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
             +   + + ++   L N       +Q            +       +   L + +N   
Sbjct: 520 SEEQAVSTEAQRQTALLNQQVAALRNQLGSLQALLDDYKARNASAEVQLQSLGQDLNAAL 579

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVADNIVKGVLFETTRTGILIS- 227
                   K ++L    +KRL++ A+ ++     L    ++   +       + G+ I  
Sbjct: 580 ARAASEERKRRLLEEAERKRLEEEARVLAEQAKDLERYRSEFFGRLRDVLGNQEGVRIEG 639

Query: 228 -IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPF- 277
                 +  +FD  S+   PE    + K+  +L             VI + GHTD  P  
Sbjct: 640 DRFVFSSEVLFDPGSADLSPEGQFEIAKVARILRAIAADIPPEINWVIRVDGHTDNVPLL 699

Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                 DNW LS  RA S  + +++S G+  DR+S  +GF  ++    +D   +   NRR
Sbjct: 700 GTGKYADNWELSQGRALSVVRYMVESLGLPPDRLSA-NGFGEYQPVNPADTAEARAQNRR 758

Query: 334 IDILVEDR 341
           I++ + ++
Sbjct: 759 IELKLTEK 766


>gi|88706015|ref|ZP_01103723.1| chemotaxis MotB protein [Congregibacter litoralis KT71]
 gi|88699729|gb|EAQ96840.1| chemotaxis MotB protein [Congregibacter litoralis KT71]
          Length = 216

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 28/172 (16%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232
            L+K+  LA   +++ Q   + +   L+G +A                 I+I D R    
Sbjct: 43  ELAKDLELAEAEREQAQARRQVLEEALAGPLASG--------------RITINDGRIGIS 88

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNW 285
            + +F  +S     E   +L  + + L      + +++ I G TD  P +      +DNW
Sbjct: 89  GSVLFALNSDRLQDEGRELLATLADPLNVFLKENDQLLMISGFTDDLPIQAGNLSFKDNW 148

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
            LS  RA +  + L+ +G+  DR+   + F   +    +  +   + NRR++
Sbjct: 149 ELSAQRALTVTRELVAAGLPADRVFAAA-FGDQQPVAPNRDESGRALNRRVE 199


>gi|295134908|ref|YP_003585584.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294982923|gb|ADF53388.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 281

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 12/239 (5%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           ++ K   T  +     ++ N    S  + +E  K     ++    ++     L K   + 
Sbjct: 27  LEAKQKETQDQLNTATVKLNACLESKDEMTERIKVLNNTNAALLNNVGDLATLSKKEAQN 86

Query: 171 ENYFLPPLSKEKILAMKRKKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
               L  + ++ +     +  +     +   + ++L G + +     +     +  + +S
Sbjct: 87  LERSLESIKEKDLAIKSMRDAINKKDSVTLALVTSLKGAIGNMNDDDIEINVEKGVVYVS 146

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNW 285
           I D     +FD        +   VL K+  V+ +  +    + GHTD      ++ +DNW
Sbjct: 147 ISD---KLLFDSGRYNVTNQAREVLGKVATVIKNKPDIEFMVEGHTDDKSISTSMFQDNW 203

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LS+ RA S  ++L    GV   R++  +G +++    ++      + NRR  I+V  +
Sbjct: 204 DLSVKRATSVVRILQDEFGVDPKRMTA-AGRSYYMPVASNATAEGRAKNRRTRIVVLPK 261


>gi|78061841|ref|YP_371749.1| hypothetical protein Bcep18194_B0991 [Burkholderia sp. 383]
 gi|77969726|gb|ABB11105.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 434

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  L+ D I  G +  +       S +  R   MF    +        ++ KI   +A  
Sbjct: 297 LKQLLKDEIAAGTV--SVDEDARHSAVTFRGDAMFKPGGASVQASMNPLILKIAGEVAKV 354

Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ++I G+TD  P R+     N  LS +RA    Q+L  +GV   R+  + G       
Sbjct: 355 PGKVTIIGYTDNVPIRSRHFASNQVLSEERAIQVMQMLQAAGVPASRLEAV-GKGDTDPV 413

Query: 322 --IASDPMNSANRRIDI 336
               +    + NRR++I
Sbjct: 414 GDNRTAQGRAQNRRVEI 430


>gi|126457554|ref|YP_001074280.1| hypothetical protein BURPS1106A_A0237 [Burkholderia pseudomallei
           1106a]
 gi|242313025|ref|ZP_04812042.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254195472|ref|ZP_04901900.1| OmpA domain protein [Burkholderia pseudomallei S13]
 gi|126231322|gb|ABN94735.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|169652219|gb|EDS84912.1| OmpA domain protein [Burkholderia pseudomallei S13]
 gi|242136264|gb|EES22667.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 421

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419


>gi|187919311|ref|YP_001888342.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187717749|gb|ACD18972.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 222

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 8/161 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +   +   L   + E+ +  +      D +KK   +L   + DN  + +       G+ I
Sbjct: 51  LQLAKTRELEIKALERHVVTEAAPATPDASKKQLLSLLAPLRDN--RQITISNAAQGVEI 108

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DN 284
           +I       +F+   +  LPE+  VL +I  VL   +   I + GHTD  P        N
Sbjct: 109 AI---NAKILFNSGDARLLPESSDVLNQIAGVLRERSKNNILVEGHTDNVPISTAKYESN 165

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           W LS  RA +  +     G+   R++ I G A +   I  D
Sbjct: 166 WELSSARAGAVVRFFADKGIEAHRMAAI-GRADNFPLIIGD 205



 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
          D+     G W I Y+D +T LM  FL ++++        +   
Sbjct: 21 DEGEEESGRWLISYSDLITTLMVLFLALYVLQLAKTRELEIKA 63


>gi|237509611|ref|ZP_04522326.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           pseudomallei MSHR346]
 gi|235001816|gb|EEP51240.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           pseudomallei MSHR346]
          Length = 421

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419


>gi|115358234|ref|YP_775372.1| hypothetical protein Bamb_3484 [Burkholderia ambifaria AMMD]
 gi|115283522|gb|ABI89038.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 432

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 185 AMKRKKRLQDLAKKI------SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +   +K++ D+A+           L  L+ D I  G +  +       S +  R   MF 
Sbjct: 271 SADVQKQIADIARMTPPPAPPQLHLKQLLQDEIAAGTV--SVDEDARHSAVTFRGDAMFK 328

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297
              +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    Q
Sbjct: 329 PGGASVQASMNPLIAKIATEIAKVPGKVTIIGYTDKVPIRSRHFASNQVLSEERATQVMQ 388

Query: 298 VLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +L  +GV  +R+  + G           +    + NRR++I
Sbjct: 389 MLQAAGVPANRLEAV-GKGDAHPVGDNRTAQGRAQNRRVEI 428


>gi|167741105|ref|ZP_02413879.1| hypothetical protein Bpse14_23766 [Burkholderia pseudomallei 14]
          Length = 394

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 178 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 237

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 238 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 295

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 296 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 355

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 356 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 392


>gi|160884848|ref|ZP_02065851.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483]
 gi|156109883|gb|EDO11628.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +Q S   KN L   ++ G  + +   +      E+      LS++K    +R++ + +L
Sbjct: 49  GNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 108

Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247
              I +    +  +  N+   +L  +T   + +   D +      +  +F   S+     
Sbjct: 109 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 167

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304
               L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K+  V
Sbjct: 168 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 227

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  +I + SG   +     ++     S NRR +I++  +
Sbjct: 228 NPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 265


>gi|319781002|ref|YP_004140478.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166890|gb|ADV10428.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 343

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +    D   +    +    +  +  +M    V  +            +   +     +  
Sbjct: 5   RGRRTDRRIDYWPGFVDALSTLLLAIMFLLTVFVLAQFLLGREISGKDTALSRLNSQINE 64

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            ++ +  E++  +    +  +L       +           Q        N        +
Sbjct: 65  LTQLLALERSTAQDKDDSLANLQASLSAAQAEKSRLERLLAQGAGAGDAANQRAAALGGE 124

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195
                + S    S+      +   L K I   E+       +++    K     +RL   
Sbjct: 125 LDSQRQISQQALSQVEILNQQIAALRKQIGALEDALNVSEIRDRDSNTKIADLGRRLNVA 184

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETI 249
             +    L+   +D   +       R  I I       ++  +F   S +       E  
Sbjct: 185 LAQRVQELNRYRSDFFGRLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMK 244

Query: 250 VVLQKIGEVLAHSTEVIS----IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303
            +   I E+       I+    + GHTD  P       RDNW LS  R+ S  + L+++G
Sbjct: 245 KLADAIIELQKEIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIENG 304

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V  +R+   +GF   +    +D   +   NRRI++ + +R
Sbjct: 305 VPANRLVA-AGFGEFQPLDPADTEEARNKNRRIELKLTER 343


>gi|86132280|ref|ZP_01050875.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85817199|gb|EAQ38382.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 287

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +       +K   +  S DL     +        L   K   +K  +    L KK S T
Sbjct: 63  EERVAEMRKDKNNLIQSSKDLTVLTKQGAVNLEKSLESLKEKDLKINRLQDALTKKDSVT 122

Query: 203 LSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           L+ + +         + +     +  + IS+ D     +F   S         +L K+  
Sbjct: 123 LALVTSLKREVGINDQDIEINVEKGVVFISLSD---KVLFKSGSYQITSRAEEILGKVAT 179

Query: 258 VLAHSTE-VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           V+    +    + GHTD  P+ R +  DNW LS  RA +  + L++ G +  ++   +G 
Sbjct: 180 VINSKPDFEALVEGHTDNVPYNRGVLIDNWDLSAKRATAIVRKLVELGANPAQLIA-AGR 238

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341
           +     + +D     S NRR  I V  +
Sbjct: 239 SEFVPLVPNDTPENKSTNRRTKIYVLPK 266


>gi|224582121|ref|YP_002635919.1| hypothetical protein SPC_0290 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466648|gb|ACN44478.1| hypothetical protein SPC_0290 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 434

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|170697801|ref|ZP_02888887.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           ambifaria IOP40-10]
 gi|170137303|gb|EDT05545.1| type VI secretion system OmpA/MotB family protein [Burkholderia
           ambifaria IOP40-10]
          Length = 433

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 185 AMKRKKRLQDLAKKI------SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +   +K++ D+A+           L  L+   I  G +  +       S +  R   MF 
Sbjct: 272 SADVQKQIADIARMTPPPAPPQLHLKQLLQGEIAAGTV--SVDEDARHSAVTFRGDAMFK 329

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297
              +        ++ KI   +A     ++I G+TD  P R+     N  LS +RA    Q
Sbjct: 330 PGGASVQASMNPLVSKIAAEIAKVPGKVTIIGYTDNVPIRSRHFASNQVLSEERATLVMQ 389

Query: 298 VLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
           +L  +GV  +R+  +  G A       +    + NRR++I
Sbjct: 390 MLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 429


>gi|194443139|ref|YP_002039516.1| hypothetical protein SNSL254_A0308 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401802|gb|ACF62024.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 434

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                ++I GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTITGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|213584595|ref|ZP_03366421.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 161

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KNQ +   +++K++          GSWKI YADFMT +MAFFLVMW+I+ +       I 
Sbjct: 2   KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +YF       +T    I + ++P      +      +     N  +LK      +    R
Sbjct: 61  EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120

Query: 127 LENNIFYLSNSQ 138
            + +    S+ +
Sbjct: 121 GDLDQLIESDPK 132



 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++       + +++     + RL  L   +   +        ++  +  +  + G+ I
Sbjct: 92  TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151

Query: 227 SIIDQRNTPM 236
            IID +N PM
Sbjct: 152 QIIDSQNRPM 161


>gi|320536711|ref|ZP_08036721.1| OmpA family protein [Treponema phagedenis F0421]
 gi|320146448|gb|EFW38054.1| OmpA family protein [Treponema phagedenis F0421]
          Length = 412

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
                   +   K+L   A  ++  L+  + +  ++      T  GI ISI        F
Sbjct: 255 YEGTASAEITETKKLDKAA--VAEDLTQKIEELGIENTTISQTDEGITISI----ENIQF 308

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +  S+  L      LQKIG +L    +  + I GHT     R  A +  +LS +RA S  
Sbjct: 309 EADSARLLSSEKEKLQKIGRLLQGFPDKELLISGHT---ALRGTAAERQKLSEERADSVA 365

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
           + L + G+ + +     GF   R      ++   + NRR++I + ++
Sbjct: 366 RYLEEIGIRDTQHLYTRGFGARRPLAPNTNEENRARNRRVEITILEK 412


>gi|170741264|ref|YP_001769919.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195538|gb|ACA17485.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 337

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 92/249 (36%), Gaps = 27/249 (10%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEEN 172
            + +  +R   +        Q +        ++EKG      + +E       ++ ++  
Sbjct: 90  QESETERRRLQDALSADQGAQGKASDLGRQLEAEKGATNRALSQVELLNQQIAAMRQQLA 149

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTG 223
                L+  +    + + R+ DL  +++  L+  V +           ++ +L   +   
Sbjct: 150 ALEDALAASETRDRESQARIADLGSRLNVALAQRVQELARYRSDFFGRLRQILGNRSDIR 209

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEVISIRGHTDAS 275
           I+      ++  +F    +   PE    L +I         ++      V+ + GHTDA 
Sbjct: 210 IVGDRFVLQSEVLFAAGQATLRPEAGAELDRIAVAIIELGRQIPPDIPWVLRVDGHTDAR 269

Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           P  +     NW LS  R+ +  Q ++  G+   R+     F   +      ++   + NR
Sbjct: 270 PISSATFPSNWALSAARSIAVVQYMVGRGIPPQRLLA-GAFGEFQPLDTGTTEEAYARNR 328

Query: 333 RIDILVEDR 341
           RI++ + +R
Sbjct: 329 RIELKLTER 337


>gi|323697552|ref|ZP_08109464.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457484|gb|EGB13349.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 248

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 81/207 (39%), Gaps = 18/207 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KI 199
           E    + +  ++  +         +   +E    L      + +   ++K   ++   + 
Sbjct: 50  EKFSETFSSVTKALQGKMDKISTSRITREEAGVLLDQALMRRQIIESQRKVFAEVKTLQT 109

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV- 258
              + GLV+ N   GV+       + +         MF        P+   ++  + +  
Sbjct: 110 KKGVEGLVSANFEDGVIT------LRV-----PGDVMFQSGQVELTPKGAQLVADLKDFF 158

Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           + H  + I I G+TD       +R  DNW +S  RA +  + L+K G+   R++  +G A
Sbjct: 159 IKHKDQNIKIVGYTDNVRPGGNSRFKDNWEISAMRAVNVLRELLKLGLESTRLTA-TGLA 217

Query: 317 HHRLKIAS--DPMNSANRRIDILVEDR 341
           +      +  +   + NRR++ ++E R
Sbjct: 218 YLNPLYPNTSEEYRAKNRRVEFILEKR 244


>gi|290475121|ref|YP_003468005.1| hypothetical protein XBJ1_2106 [Xenorhabdus bovienii SS-2004]
 gi|289174438|emb|CBJ81232.1| Conserved hypothetical protein with OmpA/MotB domains (probable
           component of SST VI cluster) [Xenorhabdus bovienii
           SS-2004]
          Length = 403

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285
           SI+  R   +F+  S+      + V++ I E + +    I + G+TD  P   +    N+
Sbjct: 281 SIVTLRGDGLFNTGSTQIKNNELPVIKHIAETINNIKGEILVIGYTDDVPINSSGFSSNY 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSL RA S  +   K     +R+ +  G         +D     + NRR++I++ 
Sbjct: 341 ALSLARAKSVKREFEKYLDHPERV-RTEGRGESDPLFPNDTPSHRAKNRRVEIVLL 395


>gi|198245916|ref|YP_002214234.1| hypothetical protein SeD_A0303 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197940432|gb|ACH77765.1| SciP protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326621978|gb|EGE28323.1| SciP protein [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 434

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|53715977|ref|YP_106445.1| hypothetical protein BMAA1914 [Burkholderia mallei ATCC 23344]
 gi|52421947|gb|AAU45517.1| OmpA domain protein [Burkholderia mallei ATCC 23344]
          Length = 426

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 210 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 269

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 270 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 327

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 328 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 387

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 388 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 424


>gi|254189549|ref|ZP_04896059.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157937227|gb|EDO92897.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 421

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419


>gi|78047693|ref|YP_363868.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78036123|emb|CAJ23814.1| OmpA family membrane protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 438

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G   S +   +  MF   S+    +   +L+++   L      + + GHTD  P
Sbjct: 310 LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 369

Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332
            R++  +DN+ LS  RA S   VL  +G+ + R  + SG    +        P   + NR
Sbjct: 370 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 428

Query: 333 RIDILVED 340
           R++IL+  
Sbjct: 429 RVEILLIP 436


>gi|27378711|ref|NP_770240.1| hypothetical protein blr3600 [Bradyrhizobium japonicum USDA 110]
 gi|27351860|dbj|BAC48865.1| blr3600 [Bradyrhizobium japonicum USDA 110]
          Length = 508

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++    + L  +N    +  + T + I+I + D     +F    +  L     +  ++  
Sbjct: 365 QLQRIRNALAKENTACAMTADQTPSFIVIRVCDL---ALFASGQATILDGFKPIALRVAA 421

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L      I + GHTD+SP R +    N+ LS++RA +    L        R+  + G  
Sbjct: 422 TLDKEPGRIRVVGHTDSSPIRTVRFPTNFELSVERAKAVAAALKPGLTDGSRVD-VEGKG 480

Query: 317 HHRLKIASDP--MNSANRRIDILVEDRQ 342
                 ++      + NRR++I +E  +
Sbjct: 481 ADAPIASNTTPEGRAKNRRVEIFIERSE 508


>gi|67642544|ref|ZP_00441299.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|121597981|ref|YP_990526.1| hypothetical protein BMASAVP1_0927 [Burkholderia mallei SAVP1]
 gi|124381968|ref|YP_001025016.1| hypothetical protein BMA10229_1214 [Burkholderia mallei NCTC 10229]
 gi|126447715|ref|YP_001079360.1| hypothetical protein BMA10247_A2189 [Burkholderia mallei NCTC
           10247]
 gi|166999157|ref|ZP_02265003.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254176494|ref|ZP_04883152.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|254203448|ref|ZP_04909809.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254205327|ref|ZP_04911680.1| OmpA family protein [Burkholderia mallei JHU]
 gi|254299607|ref|ZP_04967056.1| OmpA domain protein [Burkholderia pseudomallei 406e]
 gi|254356134|ref|ZP_04972411.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|121225779|gb|ABM49310.1| OmpA domain protein [Burkholderia mallei SAVP1]
 gi|126240569|gb|ABO03681.1| OmpA domain protein [Burkholderia mallei NCTC 10247]
 gi|147745687|gb|EDK52766.1| OmpA family protein [Burkholderia mallei FMH]
 gi|147754913|gb|EDK61977.1| OmpA family protein [Burkholderia mallei JHU]
 gi|148025117|gb|EDK83286.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|157809319|gb|EDO86489.1| OmpA domain protein [Burkholderia pseudomallei 406e]
 gi|160697536|gb|EDP87506.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|238523712|gb|EEP87149.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|243064713|gb|EES46899.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|261826580|gb|ABM99761.2| OmpA domain protein [Burkholderia mallei NCTC 10229]
          Length = 421

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419


>gi|238797993|ref|ZP_04641483.1| Type VI secretion system OmpA/MotB family protein [Yersinia
           mollaretii ATCC 43969]
 gi|238718198|gb|EEQ10024.1| Type VI secretion system OmpA/MotB family protein [Yersinia
           mollaretii ATCC 43969]
          Length = 446

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 202 TLSGLVADNIVKGVL--FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            L+ L+ D I K ++   ETT    +I     R   MF   S    PE + V++++ + +
Sbjct: 308 RLTVLLKDEIAKKLVSVDETTSRSKVI----FRGDTMFQVGSDKVRPEIVNVIERVAQEV 363

Query: 260 AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + I GHTD+ P        N  LS  RA +  + + K+G+   +I +  G    
Sbjct: 364 HRVKGAVLIVGHTDSMPINKPGYPNNQVLSEKRAANVARFMEKAGIPTGKI-RFEGKGDT 422

Query: 319 RLKIASD--PMNSANRRIDILV 338
           +    +D     S NRR++I V
Sbjct: 423 QPVSRNDDAAGRSQNRRVEIFV 444


>gi|16759268|ref|NP_454885.1| hypothetical protein STY0305 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142957|ref|NP_806299.1| hypothetical protein t2581 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052080|ref|ZP_03344958.1| hypothetical protein Salmoneentericaenterica_03522 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428430|ref|ZP_03361180.1| hypothetical protein SentesTyphi_24568 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289805848|ref|ZP_06536477.1| hypothetical protein Salmonellaentericaenterica_15952 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
 gi|25513281|pir||AI0536 probable membrane protein STY0305 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501559|emb|CAD08737.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138589|gb|AAO70159.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|329805048|gb|AEC05360.1| putative membrane protein [Salmonella enterica]
          Length = 433

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 295 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 351

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 352 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 410

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 411 PVADNGSKAGRAKNRRVEILVVE 433


>gi|188575822|ref|YP_001912751.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520274|gb|ACD58219.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 438

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+ L+A     G+L   T  G   S +   +  MF   S+    +   +L+++   L  
Sbjct: 296 ALAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQ 354

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R  + SG    + 
Sbjct: 355 VPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQP 413

Query: 321 --KIASDP-MNSANRRIDILVED 340
                  P   + NRR++IL+  
Sbjct: 414 IALPPQLPGNRARNRRVEILLIP 436


>gi|51246518|ref|YP_066402.1| flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54]
 gi|50877555|emb|CAG37395.1| related to flagellar motor protein (MotB) [Desulfotalea
           psychrophila LSv54]
          Length = 249

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 5/145 (3%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           KKI   +   +   +      E       I I+   +  +F +  S   P + ++L+ I 
Sbjct: 94  KKIHEKIKNKLK-ALRINSEVELINKDKDIIILRMDDKVLFARGQSEISPRSYMLLRNIA 152

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGF 315
           +++      + I GH+D  P       NW LS  RA SA +   +  +   DR+S I G+
Sbjct: 153 DIIRPLPVNVRIEGHSDDIPLGINNIANWNLSTSRAVSALRFFYRGNLISLDRLSAI-GY 211

Query: 316 AHHRLKIAS--DPMNSANRRIDILV 338
                   +  +   + NRR+D ++
Sbjct: 212 GDMHPIAPNTTEENRAKNRRVDFVL 236


>gi|166712215|ref|ZP_02243422.1| hypothetical protein Xoryp_12360 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 438

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+A     G+L   T  G   S +   +  MF   S+    +   +L+++   L   
Sbjct: 297 LAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQV 355

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL- 320
              + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R  + SG    +  
Sbjct: 356 PGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQPI 414

Query: 321 -KIASDP-MNSANRRIDILVED 340
                 P   + NRR++IL+  
Sbjct: 415 ALPPQLPGNRARNRRVEILLIP 436


>gi|289678953|ref|ZP_06499843.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae
           FF5]
          Length = 234

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 8/166 (4%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+   E         +  +       LQ +A+ +          +++K          + 
Sbjct: 75  SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
           I I +  ++ +F    ++P  +   +++K+  ++      I + G TD  P        N
Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           W LS  R+ S  ++L   GV+  R++ + G+   +  + +      
Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGR 233



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++   +   +    W + YADF+T+L AFF+VM+ I++ ++   K + Q       +  
Sbjct: 3   RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K I   +  P      +  +   E                  Q  R        S+ 
Sbjct: 61  RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120

Query: 138 Q 138
            
Sbjct: 121 M 121


>gi|320538203|ref|ZP_08038098.1| OmpA family protein [Treponema phagedenis F0421]
 gi|1399286|gb|AAB03251.1| MotB [Treponema phagedenis]
 gi|320145020|gb|EFW36741.1| OmpA family protein [Treponema phagedenis F0421]
          Length = 238

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           I AM   ++ + L   +   +S    +     +   +   G++IS+        F + SS
Sbjct: 74  INAMPSLEKGKKLGTALKKAVSLFAPEIKTNKIAVTSDERGLVISLAAD---AFFHRDSS 130

Query: 243 IPL-PETIVVLQKIGEVLAHST---EVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297
                ET   L  I   L+          + GHT  S    +   D+W+LS  RA +   
Sbjct: 131 DLDIEETRESLLHIARFLSDKELEGRRFRVEGHTSTSEVAASKEIDDWQLSSQRAINVLH 190

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L   G  E R   ++G+A  R K ++D     + NRR+DI++ D
Sbjct: 191 YLTDFGAEESRF-SVAGYADTRPKASNDTAEGRAYNRRVDIIILD 234



 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74
          + +K       ++   W   Y+D +T+++ FF++++  +  D    +++      +P G 
Sbjct: 1  MARKKKQAAGASSG--WLTTYSDMVTLMLCFFVMVYSPSDVDITILQSMAASISGDPTGG 58

Query: 75 NLMTASKGIFDEQN 88
              +   + D  N
Sbjct: 59 GQSVSIGRLEDLGN 72


>gi|16763665|ref|NP_459280.1| hypothetical protein STM0282 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56414595|ref|YP_151670.1| hypothetical protein SPA2482 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168238628|ref|ZP_02663686.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168261319|ref|ZP_02683292.1| SciP protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168465340|ref|ZP_02699222.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168819144|ref|ZP_02831144.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194736479|ref|YP_002113300.1| hypothetical protein SeSA_A0314 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197262114|ref|ZP_03162188.1| SciP protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363525|ref|YP_002143162.1| hypothetical protein SSPA2317 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|238913699|ref|ZP_04657536.1| hypothetical protein SentesTe_21562 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|15130931|emb|CAC48213.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16418782|gb|AAL19239.1| putative outer membrane protein, OmpA family [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56128852|gb|AAV78358.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194711981|gb|ACF91202.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631766|gb|EDX50286.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095002|emb|CAR60547.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197240369|gb|EDY22989.1| SciP protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197288542|gb|EDY27919.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205344023|gb|EDZ30787.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350071|gb|EDZ36702.1| SciP protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261245507|emb|CBG23297.1| putative type VI system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991971|gb|ACY86856.1| hypothetical protein STM14_0330 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156902|emb|CBW16378.1| putative membrane protein (SPI-6 associated) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911246|dbj|BAJ35220.1| hypothetical protein STMDT12_C02770 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084532|emb|CBY94324.1| Uncharacterized 24.6 kDa protein in ccpA 3'region ORF2 [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321224938|gb|EFX49999.1| Outer membrane protein ImpK/VasF, OmpA/MotB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128597|gb|ADX16027.1| Putative outer membrane protein, OmpA family [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987228|gb|AEF06211.1| hypothetical protein STMUK_0285 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 434

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|168232215|ref|ZP_02657273.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168240017|ref|ZP_02664949.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194448829|ref|YP_002044265.1| hypothetical protein SeHA_C0320 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468900|ref|ZP_03074884.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194407133|gb|ACF67352.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455264|gb|EDX44103.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333484|gb|EDZ20248.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205339891|gb|EDZ26655.1| SciP protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 434

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|146300670|ref|YP_001195261.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146155088|gb|ABQ05942.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 277

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 16/216 (7%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LA 196
           ++      +     +  +DL  S+     +  +    L    +       +  RLQD L 
Sbjct: 49  EEKAGLAATAESYKQHNQDLINSSKDLTVLTTKGAENLEKSLESLKEKDLKISRLQDALT 108

Query: 197 KKISSTLSGLVADNIVKGV-----LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           KK S TL+ + +     G+          +  + ISI D     +F   S     +   V
Sbjct: 109 KKDSVTLALVTSLKGAVGINDPDIEVNVEKGVVFISIAD---KLLFKSGSYDVSDKAKSV 165

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSED 307
           L K+ +V+    +    + GHTD  P+++     DNW LS+ R+ S  +VL    GV+  
Sbjct: 166 LAKVAKVVNDKPDFECMVEGHTDDVPYKSNGVILDNWDLSVKRSTSIVRVLTNDLGVNPA 225

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           ++   +G + +   +A+D     + NRR  I+V  +
Sbjct: 226 KLIA-AGRSSYVPLVANDSAENKARNRRTRIVVMPK 260


>gi|86157810|ref|YP_464595.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774321|gb|ABC81158.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 259

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNT 234
            P  +      +  + ++ L K+I   +   V +   V  V        + + +      
Sbjct: 79  GPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE-- 136

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292
             FD   +   P+ + +L  I   L      + + GHTD +P     R   NW LS  RA
Sbjct: 137 -FFDPGQAALRPQALAMLDAIAAELVPLARPLRVEGHTDETPVGGGGRWISNWELSAARA 195

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
            +    L ++  +        G              +   NRR+++++E
Sbjct: 196 ATVVGYLEQAHAARPAGLSAVGLGSAHPLSTDATPEAHERNRRVELVLE 244



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADFMT+L AFF+VM+ ++  D+       +          T   G     + P  
Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDNKRIVQATESIRWAMHFSGTGGTGALPLFDGPPS 75

Query: 93 SSQNK 97
               
Sbjct: 76 EGGGP 80


>gi|311106780|ref|YP_003979633.1| OmpA family protein 1 [Achromobacter xylosoxidans A8]
 gi|310761469|gb|ADP16918.1| OmpA family protein 1 [Achromobacter xylosoxidans A8]
          Length = 183

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +  K   +   +A + ++    L A+           +  + ++++   N  +F +    
Sbjct: 20  VTKKTYDKEAQMAAEYAALNQKLTAELSGDRAQITQLQNELKVTMV---NEILFPEGGWR 76

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQV 298
             P+    L KI   L++     + ++G+TD  P     R+    N  LS  RA +  + 
Sbjct: 77  LSPKGEQTLAKIAPTLSNLPGQQVVVQGYTDNEPIGPELRSQFPSNLELSSARADNVARF 136

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           L   GV  + IS   GF   R   ++      + NRR++I++  
Sbjct: 137 LTSKGVPPNSISA-QGFGEARPVASNSTPQGKAQNRRVEIVITS 179


>gi|228910334|ref|ZP_04074150.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
 gi|229032155|ref|ZP_04188131.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228729161|gb|EEL80161.1| OmpA/MotB domain protein [Bacillus cereus AH1271]
 gi|228849286|gb|EEM94124.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200]
          Length = 123

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
              +FD   +    E++ + +++  +L + S   I++ GHTD  P  N     NW LS  
Sbjct: 6   ENILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQ 65

Query: 291 RAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           RA +  QVL+++  +  ++ S I G+  +R    +D     + NRR+++ +  
Sbjct: 66  RAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 117


>gi|77462842|ref|YP_352346.1| hypothetical protein RSP_2289 [Rhodobacter sphaeroides 2.4.1]
 gi|77387260|gb|ABA78445.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides
           2.4.1]
          Length = 525

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 17/257 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             D+     +   +  +  + +  +                    SL    E  +    +
Sbjct: 270 EADQRAAALAAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAHDSA 329

Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
            +++ +S+  + N  L  ++ E+    + ++  +   +  +  L+   ++   +      
Sbjct: 330 NNVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389

Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            R G+ +        +  +F+  S+   PE    +  + + L             +I + 
Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449

Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD  P       RDNW LS  RA S  + + +S G    R++  +GF  +R     D 
Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508

Query: 327 MNSA--NRRIDILVEDR 341
            ++   NRRI++ + +R
Sbjct: 509 PDARAQNRRIELKLTER 525


>gi|282858415|ref|ZP_06267595.1| OmpA family protein [Prevotella bivia JCVIHMP010]
 gi|282588863|gb|EFB93988.1| OmpA family protein [Prevotella bivia JCVIHMP010]
          Length = 287

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q  +     NN    S   Q    + S             S +       +    +   +
Sbjct: 41  QSAKETIAANNARIKSLEDQLTQARESAAALQGSLDKSLTSANSNNINISKLVDQINESN 100

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +     ++ K +   L   + + L+  ++   +K V  +  +  + IS+ D     ++  
Sbjct: 101 QYIRHLVEVKSKSDSLNMALQNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKS 157

Query: 240 SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA------RDNWRLSLDRA 292
            S          L KI ++++  +   + I G+TD  P           R+NW LS  RA
Sbjct: 158 GSYEINDRAEQTLSKIAKIISDYNDYDVLIEGNTDNVPINTANKMMTNIRNNWDLSALRA 217

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
            S  + L +  GV+  RI+   G   +   +A++       NRR  I++  +
Sbjct: 218 TSVAKYLQEHFGVNPKRITA-GGRGEYNPLVANNTELGRQRNRRTQIIITPK 268


>gi|319955259|ref|YP_004166526.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319423919|gb|ADV51028.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 283

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 93/252 (36%), Gaps = 10/252 (3%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S +   DL      T++ ++      N   + +   ++       Q +    N+    + 
Sbjct: 20  SQKKYADLEAKSKETQDLLNSATVKLNTCLEEKASASSRLKTLEDQNAFLKSNNQELINN 79

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
            G     S+   +++ K            + L     +R   +   +  +L G++ +   
Sbjct: 80  MGNLTTLSSKGAQNLEKSLESLQEKDLTIRKLNDAITRR-DSVNLSLVQSLKGVLGNLDD 138

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           + +     +  + +SI D     +F   S         VL K+ +V+ +  +    + GH
Sbjct: 139 EDIQISVEKGVVFVSISD---KLLFSSGSYNVTNRAKEVLGKVAKVVNNKPDFDFMVEGH 195

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS 329
           TD  P+      DNW LS  RA +  ++L     V   R++  +  + +     +D   +
Sbjct: 196 TDDVPYNGGILLDNWDLSAKRATAIVRILQNDYNVDPKRMTAAA-RSSYVPVSTTD--KA 252

Query: 330 ANRRIDILVEDR 341
            NRR  I+V  +
Sbjct: 253 KNRRTRIVVLPK 264


>gi|114321978|ref|YP_743661.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228372|gb|ABI58171.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 362

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 21/257 (8%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
              + +++  +    +                + +            E+   + +     
Sbjct: 107 EAQQAALEDSLADQEEALDEAAARRAELRDRLAGREADLARERALTDEQAARIDRLHRQI 166

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-----GVLFET 219
            ++ ++       L   +  A  ++  ++DL ++++  L+  V +         G L E 
Sbjct: 167 IALREQLTALSEALDLSEATAAAQRAEIRDLGQRLNLALAERVQELARYRSEFFGRLREV 226

Query: 220 TRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------S 267
                 I I       ++  +F  +S+    E    L+ +   L      I         
Sbjct: 227 LGDHPDIRIEGDRFLFQSELLFATASADLGGEGREQLEGLATTLHELRGRIPDDLDWVLQ 286

Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           + GHTD  P R      NW LS  RA +  + LM  G+  +R++  +GFA +      D 
Sbjct: 287 VEGHTDRRPIRTAEFPSNWELSTARAQTIVRYLMDQGIPPERLAA-AGFAEYHPVDDRDT 345

Query: 327 MN--SANRRIDILVEDR 341
               + NRRI++ + +R
Sbjct: 346 PEAWARNRRIELRLTNR 362


>gi|167993292|ref|ZP_02574387.1| SciP protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328610|gb|EDZ15374.1| SciP protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 434

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|220917668|ref|YP_002492972.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955522|gb|ACL65906.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 259

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 176 PPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRN 233
              + E   +M+++ R ++ L K+I   +   V +   V  V        + + +     
Sbjct: 78  GGPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE- 136

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDR 291
              FD   +   P+ + +L  I   +      + + GHTD +P  +  R   NW LS  R
Sbjct: 137 --FFDPGQAALRPQALALLDAIAVEIVPLERPLRVEGHTDETPVGSGGRWMSNWELSATR 194

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
           A +    L ++  +   +    G              +   NRR+++++E
Sbjct: 195 AATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEAHERNRRVELVLE 244



 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 55/155 (35%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADFMT+L AFF+VM+ ++  D+       +          T   G     + P  
Sbjct: 16  WLVSYADFMTLLFAFFVVMYAVSRVDNKRIVQATESIRWAMHFSGTGGTGALPLFDGPPS 75

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                   +      ++     +    +++    +         S   E  + ++   + 
Sbjct: 76  EGGGPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAAT 135

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           +  D  ++    +++   +   +  +  E+ L ++
Sbjct: 136 EFFDPGQAALRPQALALLDAIAVEIVPLERPLRVE 170


>gi|238024905|ref|YP_002909137.1| OmpA/MotB [Burkholderia glumae BGR1]
 gi|237879570|gb|ACR31902.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 225

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S+ K+        ++    +   ++R+  L + + +             +   +   G+
Sbjct: 60  RSVEKQAASQTTQGTRAGAESTAARQRMLALLEPLRA----------KHEISIASLPQGV 109

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR- 282
            ++I       +F+   +  LPE++ VL ++  VL    T  I + GHTD+ P       
Sbjct: 110 EVTI---NAKILFNSGEAHLLPESMDVLDQVAAVLRDPLTANIIVEGHTDSVPISTSKYE 166

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            NW LS  RA +  + LM  GV   R++ + G A +   +
Sbjct: 167 SNWELSSARAGAVVRFLMDKGVGAHRMAAV-GRADNVPLV 205



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
          K    D+T    G W I YAD +T LM  FL ++++        +
Sbjct: 14 KAAYGDETDEQSGRWLISYADLITTLMVLFLALYVLQLARSRELE 58


>gi|94986930|ref|YP_594863.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731179|emb|CAJ54541.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
          Length = 206

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 168 NKEENYFLPPLSKEKILA--MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           ++++N       KE  +A  +K ++ +    K     +   + ++ +   +  T   G  
Sbjct: 23  DQQKNITTKQTIKESEVADFLKLREEMIAAQKNTFDAIRSFITEHALGDNIKATFDNG-- 80

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR-- 282
           I  +   +  +F   S    P+    L ++ ++ L +  + I+I+G+TD S     AR  
Sbjct: 81  IITLRLPDEVLFAPGSEQLTPQGEKALSQLRDLFLKNREQSINIKGYTDNSSVSEGARFH 140

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +NW LS  RA +  + L++ G+   R++  +G         +D     + NRR++  +E 
Sbjct: 141 NNWELSALRAVNVLRKLLQGGIEATRMTA-TGLGDLDPLAPNDTPENRAQNRRVEFTLER 199

Query: 341 R 341
           +
Sbjct: 200 K 200


>gi|149910946|ref|ZP_01899577.1| hypothetical protein PE36_12217 [Moritella sp. PE36]
 gi|149806013|gb|EDM65997.1| hypothetical protein PE36_12217 [Moritella sp. PE36]
          Length = 457

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           A  ++  L  L+   I++ ++  +     I I I       +F   S    P    +++K
Sbjct: 311 ASSLTLKLEQLLQTEIMRNIVVVQELSDRIRIRITSSD---LFASGSDQINPAYQPIIRK 367

Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I   L  +   I I GHTD      +    NW LSL RA S   VL K      R+    
Sbjct: 368 IARTLESTQGQILITGHTDKQQIISSRYPSNWHLSLARATSIADVLAKDTRLGGRLLP-E 426

Query: 314 GFAHHRLKIASDPMN----SANRRIDILVED 340
           G             +    + NRR++I +  
Sbjct: 427 GRGSSEPLAVDPTFSHDQHALNRRVEIDILR 457


>gi|58582662|ref|YP_201678.1| hypothetical protein XOO3039 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427256|gb|AAW76293.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 438

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+ L+A     G+L   T  G   S +   +  MF   S+    +   +L+++   L  
Sbjct: 296 ALAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQ 354

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R  + SG    + 
Sbjct: 355 VPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQP 413

Query: 321 --KIASDP-MNSANRRIDILVED 340
                  P   + NRR++IL+  
Sbjct: 414 IALPPQLPGNRARNRRVEILLIP 436


>gi|62178845|ref|YP_215262.1| hypothetical protein SC0275 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126478|gb|AAX64181.1| putative outer membrane protein, OmpA family [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322713295|gb|EFZ04866.1| Type IV / VI secretion system, DotU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 434

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGGAMFVPGQKTVSDAIRPVINKAAREIA 352

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD+ P  +     N  LS  RA     +L   GV   R+  I G     
Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411

Query: 320 LKIAS--DPMNSANRRIDILVED 340
               +      + NRR++ILV +
Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434


>gi|254489078|ref|ZP_05102282.1| OmpA/MotB domain protein [Roseobacter sp. GAI101]
 gi|214042086|gb|EEB82725.1| OmpA/MotB domain protein [Roseobacter sp. GAI101]
          Length = 416

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 11/169 (6%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR-------NTP 235
           + + +  + ++             V  N VKG L +    GI+    DQ+        + 
Sbjct: 246 LDSGQVAELMRRAPPPPPPPPPPDVQLNRVKGFLQKEISDGIVEVFQDQQTITVRLAGSN 305

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           MF   S    P     L+K+ + L  +   + + GH+D  P ++     N RLSL RA +
Sbjct: 306 MFGSGSDRLQPAFEEPLRKVAQALDETEGPVIVVGHSDNIPIKSSRFPSNERLSLARAEA 365

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             + L       DR+    G A  +    +      + NRRI+I++  +
Sbjct: 366 VMRTLEGKLAKSDRLEA-EGRAEKQPIADNSTREGRAKNRRIEIVLVRK 413


>gi|149178577|ref|ZP_01857164.1| OmpA/MotB [Planctomyces maris DSM 8797]
 gi|148842595|gb|EDL56971.1| OmpA/MotB [Planctomyces maris DSM 8797]
          Length = 278

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
            I++++      +  ++  Y+  +        + Q +  + S      +   L       
Sbjct: 17  TISQSACQRGPNAQLRQSMYRSQQLYDQNSELAMQRDQFQQSANALQHERDQLAMRAQSL 76

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S     N  L  L+ E+    +R   L   AK   S L G       +           
Sbjct: 77  ESNLNIANKRLDNLNAERSEMQQRYVSLMKKAKGQPSPLDGEATRRFQELADKYPDFEFD 136

Query: 225 LISIIDQRNT-PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNI 280
            I+ + + ++  +F   S    P    +L +   ++         + + GHTD  P    
Sbjct: 137 PITGVSKFHSDILFSSGSDNLKPAAQEILNQFAAIMNDGNAKRLNVLVVGHTDDKPISKA 196

Query: 281 A-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           +     R NW LS +RA S    L K GV ++R+   +G++  +  +   +D     NRR
Sbjct: 197 STQRQHRTNWHLSTNRANSVVLTLSKFGVKQERMGA-AGYSMFQPVVPNQNDSARQKNRR 255

Query: 334 IDILVE 339
           ++I V 
Sbjct: 256 VEIFVL 261


>gi|84624549|ref|YP_451921.1| hypothetical protein XOO_2892 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368489|dbj|BAE69647.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 438

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+ L+A     G+L   T  G   S +   +  MF   S+    +   +L+++   L   
Sbjct: 297 LAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTYLLERVAAALEQV 355

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL- 320
              + + GHTD  P R++  +DN+ LS  RA S   VL  +G+ + R  + SG    +  
Sbjct: 356 PGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQPI 414

Query: 321 -KIASDP-MNSANRRIDILVED 340
                 P   + NRR++IL+  
Sbjct: 415 ALPPQLPGNRARNRRVEILLIP 436


>gi|167896753|ref|ZP_02484155.1| hypothetical protein Bpse7_23620 [Burkholderia pseudomallei 7894]
          Length = 389

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L+ L+A  I  G L  +       S +  R   MF   ++   P    +++KI   +
Sbjct: 249 ELRLATLLAGEIAAGTL--SVEENARRSSVMFRGDAMFAPGAAGVNPAMGPLIRKIAAEI 306

Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH 317
           A     +++RG+TD  P ++     N  LS +RA    Q+L  +GV   R+  +  G A 
Sbjct: 307 ARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 366

Query: 318 HRLKIASDPMNSANRRIDILV 338
                 +    + NRR++I V
Sbjct: 367 PIGDNRTPQGRALNRRVEITV 387


>gi|68304102|gb|AAY89709.1| MotB [Escherichia coli LW1655F+]
          Length = 144

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 4   HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63
            G    +    I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +      
Sbjct: 7   RGSMKNQAHPIIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELI 65

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
            I +YF       +T    I + ++P      +      + +   N  +LK      + +
Sbjct: 66  QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLR 125

Query: 124 YQRLENNIFYLSNSQ 138
             R + +    S+ +
Sbjct: 126 KLRGDLDQLIESDPK 140


>gi|70729207|ref|YP_258943.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68343506|gb|AAY91112.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 270

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +    E       + +  L  +R +     AK +S    G   +  +  +    T  
Sbjct: 89  SEIAREHTEQALNNERAAKLELERQRLQLALREAKLLSVQQQGKWLEEQIISLATTQTDR 148

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +         + K+ + L  + + +  I G+TD +      
Sbjct: 149 GLVMTLGD----VLFDTGEAELKNSANRTVLKVVQFLQLNPKRVVRIEGYTDNT---GER 201

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           + N +LS DRA +   VL+  G+ E RI ++ G+         AS+   + NRR++I+  
Sbjct: 202 QSNLQLSKDRAQAVADVLVDLGIDEKRI-QVEGYGDDYPVEANASERGRAQNRRVEIVFS 260

Query: 340 DRQG 343
           D +G
Sbjct: 261 DEKG 264


>gi|289668951|ref|ZP_06490026.1| OmpA family protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 200

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
                 G   S +   +  MF   S+    +   +L+++   L      + + GHTD  P
Sbjct: 72  LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 131

Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332
            R++  +DN+ LS  RA S   VL  +G+ + R  + SG    +        P   + NR
Sbjct: 132 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 190

Query: 333 RIDILVED 340
           R++IL+  
Sbjct: 191 RVEILLIP 198


>gi|326799849|ref|YP_004317668.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326550613|gb|ADZ78998.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 302

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +  K +   L   +++ L+  ++   ++ V  +  +  + IS+ D     ++   S    
Sbjct: 116 VNTKAKSDSLNMVLTNNLTRSLSREEMQDVDVQVLKGVVYISLSDNM---LYKSGSYEIS 172

Query: 246 PETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KS 302
           P     L KI +++       + I G+TD  P      R+NW LS  RA S  Q L    
Sbjct: 173 PAAGETLGKIAKIIMDYKEYEVLIEGNTDNVPISQKNIRNNWDLSALRASSVVQALQNDY 232

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           GV   R++   G   +    ++D     + NRR  I++  +
Sbjct: 233 GVDPKRLTA-GGRGEYNPIASNDTEAGRTRNRRTQIIITPK 272


>gi|307565706|ref|ZP_07628175.1| OmpA family protein [Prevotella amnii CRIS 21A-A]
 gi|307345532|gb|EFN90900.1| OmpA family protein [Prevotella amnii CRIS 21A-A]
          Length = 286

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 14/242 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           + + K+ +  Q  +     NN    S   Q    K S             S +       
Sbjct: 31  TENNKLTNDYQSAKETIAANNARIKSLEDQLAQAKESAAALQGSLDKSLTSANYNNINIA 90

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +    +   ++     ++ K +   L   + + L+  ++   +K V  +  +  + IS+ 
Sbjct: 91  KLVDQINESNQYIRHLVEVKTKSDSLNMALQNNLTRSLSREELKEVDIQVLKGVVYISLA 150

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA------R 282
           D     ++   S          L KI +++       + I G+TD  P           R
Sbjct: 151 DNM---LYKSGSYEINSRAEQTLSKIAKIIMDYNNYDVLIEGNTDNVPINTTNKIMANIR 207

Query: 283 DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           +NW LS  RA S    L  + GV   RI+   G   +   + +D       NRR  I++ 
Sbjct: 208 NNWDLSALRATSVANYLQTRFGVDPSRITA-GGRGEYNPIVGNDTELGRQRNRRTQIIIT 266

Query: 340 DR 341
            +
Sbjct: 267 PK 268


>gi|146307342|ref|YP_001187807.1| hypothetical protein Pmen_2317 [Pseudomonas mendocina ymp]
 gi|145575543|gb|ABP85075.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 453

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  R   +F   S+        +L +I E +      + + GH+D  P   +    NW
Sbjct: 334 SVVTIRGDELFASGSASISDNLQPLLLRIAEAIRQVKGNVLVTGHSDDRPIATLRYPSNW 393

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           +LS DRA     VL       +R +   G +      +++     + NRR++I V
Sbjct: 394 KLSQDRAQQVMDVLAARSGQPERFTA-EGRSDTEPVASNESAAGRARNRRVEITV 447


>gi|170751735|ref|YP_001757995.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658257|gb|ACB27312.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 337

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 90/259 (34%), Gaps = 21/259 (8%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           DE     +    + +   + + Q     +   +     +  +            +    +
Sbjct: 80  DEVRNLRTTLAGVEAERDRAKVQAEAATVSQGAAGTLDKQLETERGATRRAQSQIDLLNE 139

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVK 213
              ++ ++       L+  +    + + R+ +L  +++  L+  V +           ++
Sbjct: 140 QISAMRRQLAALEDALAASESRDRESQARIAELGSRLNVALAQKVQELARYRSNFFGRLR 199

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEV 265
            +L       ++      ++  +F   S+   PE    L +I         ++ A    V
Sbjct: 200 QILGNRPDIRVVGDRFVLQSEVLFPAGSATLKPEAGPELDRIAGAVSELAKQIPADLPWV 259

Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-- 322
           + + GHTDA P        NW LS  RA +  Q L   G+    +     F   +     
Sbjct: 260 LRVDGHTDARPISTSQFPSNWSLSAARAIAVVQFLAGKGIPPQHLLA-GAFGEFQPLEAG 318

Query: 323 ASDPMNSANRRIDILVEDR 341
           A++   + NRRI++ + +R
Sbjct: 319 ATEEAYARNRRIEMKLTER 337


>gi|126664115|ref|ZP_01735108.1| putative flagellar motor protein MotB [Flavobacteria bacterium
           BAL38]
 gi|126623829|gb|EAZ94524.1| putative flagellar motor protein MotB [Flavobacteria bacterium
           BAL38]
          Length = 278

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 15/212 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           E   + +    +   DL  +     ++  +    L    +       +  RLQD   K  
Sbjct: 53  EALASQVDFLKKNNTDLINNMGNLTTLTTKGAENLEKSLESLKEKDLKINRLQDALTKKD 112

Query: 201 STLSGLVADNIVK------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           S    LV     +       +     +  I+ISI D     +F   S     +   VL K
Sbjct: 113 SVTLALVTSLKREVGIDDPDININVEKGVIMISIADN---LLFKSGSYEVSDKAKGVLAK 169

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311
           + +V+    +    + GHTD  P +N    DNW LS+ RA S  +VL K  GV+  ++  
Sbjct: 170 VAKVINSKPDFECMVEGHTDNVPIKNAVLLDNWDLSVKRATSIVRVLHKELGVNPKQLIP 229

Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            +G + +   + +D     + NRR  I++  +
Sbjct: 230 -AGRSSYIPLVENDSPANRAKNRRTKIIIMPK 260


>gi|299145102|ref|ZP_07038170.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23]
 gi|298515593|gb|EFI39474.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23]
          Length = 280

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 15/225 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N      +Q S   KN L   ++ G  + +   +      E+      LS++K    +R+
Sbjct: 43  NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102

Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241
           + + +L   I +    +  +  N+   +L  +T   + +   D +      +  +F   S
Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
           +         L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L
Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +K+  V+  +I + SG   +     +      S NRR +I++  +
Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPVDDNKTAEGRSKNRRTEIIMAPK 265


>gi|167741000|ref|ZP_02413774.1| hypothetical protein Bpse14_23241 [Burkholderia pseudomallei 14]
          Length = 433

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L  T       S++  R   MF    S  L E   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLSEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   DRI +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    S NRR++I V
Sbjct: 412 VAENATPAGRSRNRRVEIAV 431


>gi|332290734|ref|YP_004429343.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168820|gb|AEE18075.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 293

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 12/204 (5%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
                +K + +  S DL     +  +     L   K   +K  +    L KK S TL+  
Sbjct: 67  AEMRKDKNELIQSSKDLTMLTKQGASNLEKSLESLKEKDLKINRLQDALTKKDSVTLA-- 124

Query: 207 VADNIVKGVLFETTRTGILIS----IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +  ++ K V    T   I +      I   +  +F   S         +L K+  V+   
Sbjct: 125 LVTSLKKEVGINDTDIEINVEKGVVFISLSDKVLFKSGSYNITSRAEEILGKVATVINGK 184

Query: 263 TE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 + GHTD  P+       DNW LS  RA +  + L+  G +  ++   +G +   
Sbjct: 185 PNFEALVEGHTDNVPYNKGGVLIDNWDLSAKRATAIVRKLVDLGANPAQLIA-AGRSEFV 243

Query: 320 LKIASDP--MNSANRRIDILVEDR 341
             + +      S NRR  I V  +
Sbjct: 244 PLVDNSTAENRSTNRRTKIYVLPK 267


>gi|300113742|ref|YP_003760317.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299539679|gb|ADJ27996.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113]
          Length = 286

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 14/253 (5%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P +  + + D+   +  ++ +    +     K+  QR +       N ++ EH      +
Sbjct: 34  PAKLERAEADVEQAQADSRVTQYAPVRLDEAKEALQRAQVAWEADKNVEEVEHLAYLAQQ 93

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            +   +        +  I          L     L  ++ K    +A+  +  L   +A 
Sbjct: 94  RAAIAEMAAADKAAQAEIKNLGQERQQMLMDMHELEARQAKEQAKMAEVRADKLEKRLA- 152

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
                +  E T  G ++++ D     +F+  S+      +  L ++   L    +  + I
Sbjct: 153 ----ALNAEKTERGYVLTLGD----ILFEVDSAELTSGGMQNLFRLVTFLKEYPDRQVVI 204

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPM 327
            GHTD++        N  LS  RA + Y+ L+ +G+S  RI+    G A+      +   
Sbjct: 205 EGHTDST---GSGVYNMELSQRRADAVYEFLVNNGISPARIAAHGYGKAYPVAPNNTAAG 261

Query: 328 NSANRRIDILVED 340
              NRR++I++ D
Sbjct: 262 RQKNRRVEIVILD 274


>gi|294644876|ref|ZP_06722614.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294808230|ref|ZP_06766993.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292639770|gb|EFF58050.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294444557|gb|EFG13261.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 256

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N      +Q S   KN L   ++ G  + +   +      E+      LS++K    +R+
Sbjct: 19  NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 78

Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241
           + + +L   I +    +  +  N+   +L  +T   + +   D +      +  +F   S
Sbjct: 79  RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 137

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
           +         L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L
Sbjct: 138 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 197

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +K+  V+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 198 IKNYNVNPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 241


>gi|70733365|ref|YP_263140.1| hypothetical protein PFL_6082 [Pseudomonas fluorescens Pf-5]
 gi|68347664|gb|AAY95270.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 441

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+G +A++I  G +       +  S++  R   +F  +S+  L +   ++ +I + +  
Sbjct: 299 RLAGFLAEDIKAGRV--AVEDAVDRSVVTIRGDELFASASASILDDYQPLMLRIADAVRK 356

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + I GH+D  P   +    NW+LS  RA S  Q+L       +R S   G +    
Sbjct: 357 VKGQVRITGHSDNRPIATLRFPSNWKLSQARAESVLQILAAKTGQPERFSA-EGRSDTEP 415

Query: 321 K--IASDPMNSANRRIDILVE 339
               A+    + NRR++I V 
Sbjct: 416 LATNATAEGRARNRRVEISVL 436


>gi|225010858|ref|ZP_03701326.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005066|gb|EEG43020.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-3C]
          Length = 277

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 20/226 (8%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           +  +     + N +  +N+Q+  +   +LT  + KG D     +LE+S+   +   L   
Sbjct: 51  DTARLQLLEDQNAYLKANNQELINNLGNLTTLTSKGAD-----NLERSLESLKEKDLTIR 105

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
                +  +    L  L + +   L  L  ++    +     +  + +SI D     +F+
Sbjct: 106 KLNNAVTRRDSVNLA-LVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLFN 157

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296
             S +   +   VL+K+ +V+ +  +    + GHTD   F      DNW LS+ RA S  
Sbjct: 158 TGSYVVSNKAKSVLEKVAKVVNNKPDFEFMVEGHTDERSFSKGDLVDNWDLSVKRATSVV 217

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           ++L K  GV   R++  +G A +    +     S NRR  I+V  +
Sbjct: 218 RMLQKDFGVDPKRMTA-AGRAEYMPVSSE---LSKNRRTRIVVLPK 259


>gi|254182815|ref|ZP_04889408.1| OmpA domain protein [Burkholderia pseudomallei 1655]
 gi|184213349|gb|EDU10392.1| OmpA domain protein [Burkholderia pseudomallei 1655]
          Length = 421

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           GV   R+  +  G A       +    + NRR++I V
Sbjct: 383 GVPASRLEALGKGGAAPIGDNRTPQGRALNRRVEITV 419


>gi|295085810|emb|CBK67333.1| Flagellar motor protein [Bacteroides xylanisolvens XB1A]
          Length = 256

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N      +Q S   KN L   ++ G  + +   +      E+      LS++K    +R+
Sbjct: 19  NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 78

Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241
           + + +L   I +    +  +  N+   +L  +T   + +   D +      +  +F   S
Sbjct: 79  RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 137

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299
           +         L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L
Sbjct: 138 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 197

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +K+  V+  +I + SG   +     ++     S NRR +I++  +
Sbjct: 198 IKNYNVNPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 241


>gi|296156473|ref|ZP_06839311.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295893072|gb|EFG72852.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 233

 Score = 99.6 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E +      S              D++KK    L   + D   + +       G+ I+I 
Sbjct: 65  ERHALTEAASAGNAQPSNAMPSAPDVSKKRLLALLAPLQDK--RQIAISNAAQGVEIAI- 121

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRL 287
                 +F+   +  LPE+  VL +I  VL   +   I + GHTD  P        NW L
Sbjct: 122 --NAKILFNSGDARLLPESFEVLNQIAGVLRDRSKNNILVEGHTDNVPISTAKYESNWEL 179

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           S  RA +  +     G+   R++ I G A +   I  D
Sbjct: 180 SSARAGAVVRFFADKGIEAHRMAAI-GRADNFPLIIGD 216



 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81
           A  ++    G W I YAD +T LM  FL ++++        +      +   +     + 
Sbjct: 19  AAGESEEQSGRWLISYADLITTLMVLFLALYVLQLAKTRELEIKALERHALTEAASAGNA 78

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
              +    P     +K  L       ++   + I +  Q  +       +F   +++   
Sbjct: 79  QPSNAM--PSAPDVSKKRLLALLAPLQDKRQIAISNAAQGVEIAINAKILFNSGDARLLP 136

Query: 142 HCKNSLTRDSEKGKDLCKS 160
                L + +   +D  K+
Sbjct: 137 ESFEVLNQIAGVLRDRSKN 155


>gi|260597012|ref|YP_003209583.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032]
 gi|260216189|emb|CBA29047.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032]
          Length = 424

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRN 233
           +P  S  + L   ++  + +        L+ L+ + I +  V  + +     +       
Sbjct: 259 MPQESFRQQLLAMQRLPVTEPRPAERLRLAVLLKEEIARHWVSVDESPRESRVIFH---G 315

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
             MF   ++I  P+ + +++++   +      + I GHTD++P R+ A   N  LS  RA
Sbjct: 316 DSMFSSGAAIVRPDRVDIIRRVAAEVRRVDGAVVIIGHTDSTPIRSGAFASNQALSEKRA 375

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
            +     +  G++ ++I+   G    +   ++  +   S NRR++I V
Sbjct: 376 EAVAAYFLAQGIAPEKITP-KGAGDTQPIASNHDEKGRSQNRRVEIFV 422


>gi|83716132|ref|YP_438328.1| hypothetical protein BTH_II0126 [Burkholderia thailandensis E264]
 gi|167614770|ref|ZP_02383405.1| hypothetical protein BthaB_00705 [Burkholderia thailandensis Bt4]
 gi|257141357|ref|ZP_05589619.1| hypothetical protein BthaA_19439 [Burkholderia thailandensis E264]
 gi|83649957|gb|ABC34021.1| OmpA domain protein [Burkholderia thailandensis E264]
          Length = 433

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ + I +G+L         + +   R   MF    S  LPE   VL K+   +A 
Sbjct: 295 RLSILLKNEIARGLLTVDEDDARSVVVF--RGDSMFRSGESRVLPEIEPVLDKVAREVAR 352

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               +++ GH+D  P R     +N  LS  RA    Q+L++ G   D I +  G    + 
Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHI-RSEGRGDAQP 411

Query: 321 KIASDP--MNSANRRIDILV 338
              +      S NRR++I V
Sbjct: 412 VAENTTPAGRSRNRRVEIAV 431


>gi|113866689|ref|YP_725178.1| outer membrane protein [Ralstonia eutropha H16]
 gi|113525465|emb|CAJ91810.1| outer membrane protein [Ralstonia eutropha H16]
          Length = 425

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+ L+ D I +GV+  + +     S +  R   MF    +    + + +L K+   +  
Sbjct: 287 RLAELLKDEIARGVI--SVQEDATRSAVTFRGDDMFGGGRAEVSDKVLPLLDKVAGEINK 344

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +  +++ GH+D  P +      N  LS +RA +  + L   GV+++R+  I G      
Sbjct: 345 VSGKVTVVGHSDNVPIKTAKYPSNQVLSEERAATVTEYLASKGVAKNRLEAI-GKGDSEP 403

Query: 321 K--IASDPMNSANRRIDILVED 340
                +    + NRR++I+V  
Sbjct: 404 LTDNKTPAARARNRRVEIVVTP 425


>gi|78356759|ref|YP_388208.1| chemotaxis protein PomB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219164|gb|ABB38513.1| chemotaxis protein PomB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 253

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 10/183 (5%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLF 217
           K     +   KE ++     S+ +   ++  K  ++L   +    + ++ D  + K    
Sbjct: 64  KEAFGVQIKRKEASFAAFSPSEFERKDVELDKENKELLGMVLEVKNFVIQDPELKKTAKI 123

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
            T   G++I I    +  +F   S+ PLP+       +  +L      + +R HT     
Sbjct: 124 TTEDAGVVIRI---PSYALFAPGSAKPLPDAASKTATVVRILRERNLDLVVRCHTSDEKA 180

Query: 278 R--NIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANR 332
              ++   NW LS  RA +  ++L+K G +   R+  + G+A  +  + +  D   + N 
Sbjct: 181 EEESLYPSNWELSSARAAAVLRLLIKEGDIPPSRMKAV-GYADSQPLLPNNTDENRAINS 239

Query: 333 RID 335
           R++
Sbjct: 240 RME 242


>gi|260595859|ref|YP_003208430.1| hypothetical protein CTU_00670 [Cronobacter turicensis z3032]
 gi|260215036|emb|CBA26725.1| hypothetical protein CTU_00670 [Cronobacter turicensis z3032]
          Length = 380

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +    +  L  + +  +  +  ++  +++A  ++  L G +   I  G+           
Sbjct: 193 LGDNTSPVLAKIYQTPLPEVTVQQPAREVAPVLN--LRGFLRPEIEAGL-VAVRDEADR- 248

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S++       V+ ++ + + + +  I + G++D  P R+     N+
Sbjct: 249 SVVILKGDGLFASASTVVRDRYEPVIDRVAQAMNNVSGKILVVGYSDNVPIRSARFASNY 308

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSL RA S  ++L        R+ +  G         ++     + NRR++I + 
Sbjct: 309 ELSLSRAESVQKMLQAHLADPSRV-RAQGRGEMDPIAPNNTPENRARNRRVEITLL 363


>gi|256830500|ref|YP_003159228.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579676|gb|ACU90812.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score = 99.6 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 75/187 (40%), Gaps = 8/187 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+  +          +  F+  + +    A+   +R++DL         G+    + + +
Sbjct: 56  DMGLAPKKGAGRLTTKFEFMNRIIENPAEALHDPQRIKDLLFPDEVLPEGMARSTLNENL 115

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                  GI + + D     +F    S    ++  +L +  + LA  T  +++ G+TD  
Sbjct: 116 QILVRPEGIALVLSDGM---LFGVGESALTEDSRKLLSEFAQFLASVTMPVNVAGYTDNI 172

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
           P     +DN+ LS +RA S     ++ G    R   +S +         A+    + NRR
Sbjct: 173 P--AGQKDNYMLSSERAMSVLTFFLQQGFDPRRF-SVSAYGEAFPLGDNATPEGRAKNRR 229

Query: 334 IDILVED 340
           ++IL++ 
Sbjct: 230 VEILLKT 236



 Score = 40.2 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 31/66 (46%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + ++    +  +   SW + +AD MT+L++FF+++  +++ D    + +  +F       
Sbjct: 1  MARRKKRAELESPGASWMVTFADLMTLLLSFFVLLLSMSSMDKSILRDVVSHFVGDMGLA 60

Query: 77 MTASKG 82
               G
Sbjct: 61 PKKGAG 66


>gi|302035651|ref|YP_003795973.1| putative OmpA/MotB family outer membrane protein [Candidatus
           Nitrospira defluvii]
 gi|300603715|emb|CBK40046.1| putative Outer membrane protein, OmpA/MotB family [Candidatus
           Nitrospira defluvii]
          Length = 501

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           +++  ++  +       +Q S   ++    +   G       D  KSI   ++      S
Sbjct: 248 EQRLNEKGRDLSPRQKGTQLSSSQRDGGPLNQRSGAAHQSLGDTTKSIPDGKSAAQGKDS 307

Query: 180 KEKILAM-----KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
               +A      + + R   +A      L  L  DN  K +        + +++    + 
Sbjct: 308 TRSGVAFPGNPAQSEARNGSIAAVKEELLKVLPGDNRQKTISMRQDGNRLTVAL---DSN 364

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLSL 289
            +F    +   PE   +L++IG VL    +  + + GHTD             DN  LS 
Sbjct: 365 LLFTWGDAALSPEGATILKRIGAVLGQLPDKFVQVAGHTDNQALSKTLQKTFPDNKALSW 424

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            RA +A + L+  G+  D+   + G A  R     A++     NRR+++++
Sbjct: 425 ARAENARRALVNGGIPADKTKAV-GLADTRPLTSNATEQGRQKNRRLELII 474


>gi|74095554|emb|CAJ27320.1| conserved hypothetical protein [Cronobacter sakazakii]
          Length = 444

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L+ L+   I +  V  + ++    +         MF    +   PE I +++++   + 
Sbjct: 306 RLAVLLKAEIARHWVSVDESQRESRVIFH---GDSMFAVGDASVRPERIDIIRRVAAEVQ 362

Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                + I GHTD++P R+ A   N  LS  RA +      + G++ ++I+   G    +
Sbjct: 363 RVNGEVVIIGHTDSTPIRSGAFASNQALSEKRAQAVAAYFREQGIAPEKITS-KGAGDTQ 421

Query: 320 LKIASDP--MNSANRRIDILV 338
              ++      S NRR++I V
Sbjct: 422 PIASNHDAQGRSQNRRVEIFV 442


>gi|284040434|ref|YP_003390364.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819727|gb|ADB41565.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 537

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 19/257 (7%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ---QSEHCKNSLTR 149
              + + + + +    N      GST+          +   L + +   Q          
Sbjct: 292 GKGDIVRVKLTDDTPANQPGKVGGSTDVATNTDATRPDPVALISGKVIDQLTGKPIEARI 351

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL--V 207
             +   D  ++ +        E   + P  +   +    K  + + A    +   G   +
Sbjct: 352 IYQTLPDGAEAGEATSDPITGEYKIVLPYGQRYTMRAVAKDFIAEGANIDLTQPKGYQQI 411

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266
            D  +K +  E    G ++ +    N   FD   S   PE+   L ++   L  + ++ I
Sbjct: 412 TDQQLKLIPIEV---GSVVRL----NNIFFDTGKSELRPESGPELDRLVTTLNDAPKMTI 464

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            +RGHTD +        N +LS DRA +  +  +  G+  DRI+   GF   +   +++ 
Sbjct: 465 EVRGHTDNT---GSNEINAKLSQDRADAVREYFISKGIEPDRIAS-KGFGEAKPTASNNT 520

Query: 327 MNSA--NRRIDILVEDR 341
                 NRR++ ++  +
Sbjct: 521 EEGRQQNRRVEFVIVKK 537


>gi|120553263|ref|YP_957614.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120323112|gb|ABM17427.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 348

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 114/332 (34%), Gaps = 28/332 (8%)

Query: 37  YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           Y D ++ L+   + M ++          T    +         L    + +  EQ+  E 
Sbjct: 18  YVDALSALLMLVIFMLLVYVVCQLYLSQTLSDRDNQLARLSAQLNELPELLGLEQSKTEA 77

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
                + L  D   +    D  I      ++    +         Q +   +    +D  
Sbjct: 78  LENQIVRLQDDYSTSLKRNDQLIEQLESNREQLMRQTASVEAQAEQLARMEEAVGEKDQI 137

Query: 153 KGKDLC---KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                    + ++   S+ ++       L  ++ +  ++++ L+ +++++++ L+  V  
Sbjct: 138 SASQQAMILQLSNQIVSLREQLRQIASALELQQQMTDEKEQELEQVSRRLNTLLAERVNQ 197

Query: 210 NIVKGVLF-----ETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKI----- 255
                  F     +       + I+  R    +  +F  +S+    E    L K+     
Sbjct: 198 LQQYQSEFFARLRDILAGNENVRIVGDRFLLPSELLFASASAELGEEGRQELDKLADLLL 257

Query: 256 ---GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
                +      ++ I GHTD  P        NW LS  RA +  + L   GV E R++ 
Sbjct: 258 DVSSRIPDDVDWILRIDGHTDMLPINTQRFPSNWELSTARAVAVVRYLATEGVPERRMAA 317

Query: 312 ISGFAHHRLKIA-SDPMN-SANRRIDILVEDR 341
            +GF         + P     NRRI++ + DR
Sbjct: 318 -AGFGEFFPVADGTSPEALQRNRRIELKLTDR 348


>gi|315123150|ref|YP_004065156.1| hypothetical protein PSM_B0207 [Pseudoalteromonas sp. SM9913]
 gi|315016910|gb|ADT70247.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           D   +    L  L+   I  G++       GI I+I  +    +F +  S  LP    +L
Sbjct: 280 DKKDQQLRVLEQLLQTEIKMGIVAVAKNSDGIRITINSEN---LFKQGDSQLLPSFQPIL 336

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +K+   L  +   + I GHTD  P        NW LSL RA     ++ KS     R+  
Sbjct: 337 EKLALSLEGTKGRVLITGHTDDLPISTDKYPSNWHLSLARATQVANLMAKSTNLSGRLWP 396

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             G        ++    S   NRRI+I + 
Sbjct: 397 -EGKGAAEPIASNSDSASRSLNRRIEIDLL 425


>gi|293369282|ref|ZP_06615869.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292635612|gb|EFF54117.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
          Length = 256

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +Q S   KN L   ++ G  + +   +      E+      LS++K    +R++ + +L
Sbjct: 25  GNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 84

Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247
              I +    +  +  N+   +L  +T   + +   D +      +  +F   S+     
Sbjct: 85  QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 143

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304
               L K+ EVL   T+  + I GHTD  P   +  +DNW LS+ RA S  ++L+K+  V
Sbjct: 144 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 203

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  +I + SG   +     ++     S NRR +I++  +
Sbjct: 204 NPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 241


>gi|144899936|emb|CAM76800.1| OmpA/MotB [Magnetospirillum gryphiswaldense MSR-1]
          Length = 220

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           ++ ++++ ++++   + +   +    V   T   G+++++       MF   S+   P  
Sbjct: 62  QRPIENMRQELTQAAATVQGSD--DAVDVGTDDRGVVMNL---DAGAMFTPGSADIKPTM 116

Query: 249 IVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304
           + +L+++   L         + I+GHTD++P +      N+ L+  RA +  +  +  GV
Sbjct: 117 VPLLKELAGTLNQPRFDNYRLEIQGHTDSTPVKTAQFPSNFDLASARALATMRAFVSLGV 176

Query: 305 SEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVEDR 341
           +E ++  ++ +     ++ +            + NRR+ I +  R
Sbjct: 177 AESKMI-VAAYGQFAPRVPNTLEDGTPLPANQALNRRVAIHIYPR 220



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           SW   Y D +T+L+ FF+++  I+  D    + +        ++ MT+  G    Q P E
Sbjct: 15  SWMETYGDMVTLLLCFFILLASISKVDSVIYEKV--------QSGMTSEIGKQPPQRPIE 66

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              Q     +     + ++VD+      
Sbjct: 67  NMRQELTQAAATVQGSDDAVDVGTDDRG 94


>gi|167576592|ref|ZP_02369466.1| hypothetical protein BthaT_00570 [Burkholderia thailandensis TXDOH]
          Length = 433

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 100/319 (31%), Gaps = 32/319 (10%)

Query: 28  NNLGSW-----KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
              G W      I Y   +     FFL++  +     +    +E  +   G         
Sbjct: 137 GGGGVWASQSLLITYEGEVDGGEKFFLLIGRMATDPQEYVDILEILYRVLGLGFEGRYSV 196

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           + D      R    +I   +   IT     ++   +   +  +  +  +           
Sbjct: 197 VAD-----GRRHLEQIRQRLWTLITGARDAIQPELSPHWRGAEPGKLPLLRSV----PAW 247

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
              S       G        L    N  E   L     E     +R +    L  +I+  
Sbjct: 248 ATGSFVFLLLFGLFAFYQYRLLTERNALEARILAIAKDEPASPQQRLRLSILLKNEIARG 307

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  +  D+    V+F              R   MF    S  LPE   VL K+   +A  
Sbjct: 308 LLTVDEDDTRSVVVF--------------RGDSMFRSGESRVLPEIEPVLDKVAREVARV 353

Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              +++ GH+D  P R     +N  LS  RA    Q+L++ G   D I +  G    +  
Sbjct: 354 GGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHI-RSEGRGDAQPV 412

Query: 322 IASDP--MNSANRRIDILV 338
             +      S NRR++I V
Sbjct: 413 AENTTPAGRSRNRRVEIAV 431


>gi|256842297|ref|ZP_05547801.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736181|gb|EEU49511.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 295

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D        ++     N  +    K   L  ++   L +  + I+     + A N    
Sbjct: 82  RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 141

Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  + +  +L      +++ ++         +  +F   S+         L K+ EVL 
Sbjct: 142 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 201

Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
             +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G   
Sbjct: 202 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 260

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
                 ++     S NRR +I++  +
Sbjct: 261 FMPVADNETADGRSKNRRTEIIMAPK 286


>gi|167590675|ref|ZP_02383063.1| hypothetical protein BuboB_35381 [Burkholderia ubonensis Bu]
          Length = 394

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLD 290
           R   MF    +     +  ++ KI   +A     +++ G+TD +P R +    N  LS  
Sbjct: 284 RGDAMFPPGKAAVNASSGPLIAKIAAEIARVPGKVTVLGYTDNAPVRGSAFPSNEALSDA 343

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           RA    Q+L  +GV  +R++ +  G A+      + P  + NRR++I V
Sbjct: 344 RATQVMQMLQAAGVPANRLAALGKGAANPIGDNRTVPGRALNRRVEITV 392


>gi|302035652|ref|YP_003795974.1| putative OmpA/MotB family outer membrane protein [Candidatus
           Nitrospira defluvii]
 gi|300603716|emb|CBK40047.1| putative Outer membrane protein, OmpA/MotB family [Candidatus
           Nitrospira defluvii]
          Length = 400

 Score = 99.2 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 81/212 (38%), Gaps = 14/212 (6%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +NS +    KN+     +   DL  +      +  E       ++  K    ++K  L 
Sbjct: 194 EANSHELAGLKNAAGDREKLVADLAAARQRASDLENEIGRRDQEMTALKGALDQQKTSLA 253

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +    +S  L   VA      V  +     +    +    T +FD   +   P    VL 
Sbjct: 254 EAKDDLSKLLQAEVAKG---NVTMKQLGDQLT---LGLATTLLFDSGEATLKPGGADVLH 307

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +IG VL    +  I + GHTD  P +         N  LS  RA SA Q L + G++ D+
Sbjct: 308 RIGGVLKQYPDRSIHVAGHTDNVPIKGRLAKTYPTNVELSQARAESARQALTEGGMAPDK 367

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I    G A  R   ++        NRR++I+V
Sbjct: 368 IEA-KGHADSRPMASNSTAEGRQKNRRVEIVV 398


>gi|307727324|ref|YP_003910537.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587849|gb|ADN61246.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 230

 Score = 99.2 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ S L+ L  +   + +    +  G+ I+I       +F+   +  L E+  VL +I  
Sbjct: 91  QLLSLLAPLQDN---RQITIAHSPQGVEIAI---NAKVLFNSGDARLLQESYGVLNQIAT 144

Query: 258 VLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           VL   +   I + GHTD+ P        NW LS  RA +  +     G+   R++ I G 
Sbjct: 145 VLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADKGIQAHRMAAI-GR 203

Query: 316 AHHRLKI 322
           A +   I
Sbjct: 204 ADNFPLI 210



 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 5/142 (3%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           +     D       W I YAD +T LM  FL ++++    +   +             + 
Sbjct: 16  RHHDGHDNGEQSDRWLISYADLITTLMVLFLALYVLQLAKNSELQ-----IKTLQHRAVK 70

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            + G+    +        K  L       +++  + I  + Q  +       +F   +++
Sbjct: 71  EAVGVQPPADAANAKEAAKEQLLSLLAPLQDNRQITIAHSPQGVEIAINAKVLFNSGDAR 130

Query: 139 QSEHCKNSLTRDSEKGKDLCKS 160
             +     L + +   +D  K+
Sbjct: 131 LLQESYGVLNQIATVLRDRAKN 152


>gi|46578465|ref|YP_009273.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603951|ref|YP_968351.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46447876|gb|AAS94532.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough]
 gi|120564180|gb|ABM29924.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311232393|gb|ADP85247.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 246

 Score = 99.2 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 9/207 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S   +    R +   +         ++   + +  L  L  +          ++ L  
Sbjct: 41  SMSSVDRVQFERMASSLRQPGDLAGTPEAPRTDVSKRLRDLLMDAEALSANAVEIRSLLF 100

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                  G+ A  + + V       G++I++    +  +F +      P ++ +L  + +
Sbjct: 101 PPQVLPPGVEARTVERDVEVLENPEGVVIALT---HDLLFPQGQDRLPPASLRLLDTLTD 157

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           VLA     +++  HTDA+       D W LS  RA S  +  ++ G+   R   +SG+  
Sbjct: 158 VLAGLDADVNVSAHTDAT---EGGADPWDLSDRRALSVLEHFLQRGMDPARF-SVSGYGP 213

Query: 318 HRLKIASD-PMNS-ANRRIDILVEDRQ 342
            R   AS  P  +  NRR++ILV+  +
Sbjct: 214 DRPLDASASPEAAQRNRRVEILVKTAK 240


>gi|224540643|ref|ZP_03681182.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517715|gb|EEF86820.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 299

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 16/239 (6%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
           +  + Q  Q Q  E      S   +    + +          L  S D     N + N  
Sbjct: 44  LDKSYQDAQIQLAEYRTQSKSLEDRLSEARKNNQELRNSYATLQGSLDKSLQQNSQGNIN 103

Query: 175 LPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILIS 227
           +  L  E   + +  K+L D   K       +++ L+  ++   +K V  +  +  + IS
Sbjct: 104 ISKLVDEINASNRYIKQLVDAKSKSDSLNVMLTNNLTRSLSREELKEVDVKVLKGVVYIS 163

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNW 285
           + D     ++   S          L KI +++       + + G+TD  P  R   R+NW
Sbjct: 164 LADNM---LYKSGSYEINERAGETLSKIAKIITDYKDYEVLVEGNTDNVPISRTNIRNNW 220

Query: 286 RLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
            LS  RA S  Q L  K GV   R+S  +G   +     +D       NRR  I+V  R
Sbjct: 221 DLSALRASSVVQELQNKYGVDPKRLSA-AGRGEYNPITDNDSELGKQRNRRTQIIVTPR 278


>gi|332161223|ref|YP_004297800.1| putative OmpA family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605118|emb|CBY26616.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665453|gb|ADZ42097.1| putative OmpA family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860429|emb|CBX70737.1| hypothetical protein YEW_EP20110 [Yersinia enterocolitica W22703]
          Length = 458

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 190 KRLQDLAKKI--------SSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240
           KR++ L + +           L+ L+ D I K ++  + T +   +     +   MF   
Sbjct: 300 KRMEALQRPVIVPTVAVQKLRLAILLKDEIAKQLVSVDETSSHSKVIF---KGDTMFQVG 356

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVL 299
           S    PE + V++++ + +      + I GHTD+ P  +    +N  LS  RA +  + +
Sbjct: 357 SDKVRPEIMSVIERVAQEVHRVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFM 416

Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            K+G+  D+I +  G    +   ++D     S NRR++I V
Sbjct: 417 EKAGIPTDKI-QFEGKGDTQPVSSNDDAAGRSQNRRVEIFV 456


>gi|14331084|emb|CAC40971.1| hypothetical protein [Vibrio pommerensis]
          Length = 378

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              +F+  S+   P  ++ LQ +   L    E V+ I GHTD+   +     N RLS  R
Sbjct: 259 GEALFETGSTSLSPSLMLQLQPLLARLKQYPETVVEISGHTDS---KGSDTLNQRLSEQR 315

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           A S    L+  GV  +RI+++ G+       ++D     + NRR++I+
Sbjct: 316 AQSVANYLISKGVDPERITRVVGYGESLPVASNDTESGRAQNRRVEIV 363


>gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 427

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 21/289 (7%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
                  ++L +    +  E    + S+    D S                  ++ + + 
Sbjct: 132 DALRRLREDLESQVGRLASELEESQASAGQLRDRSRALEARLAETQETTLLAQREIEARE 191

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +          ++        +  ++    +       + + ++       L   +    
Sbjct: 192 IRIQDLAAGIEERDRALVEERSLTADAQARVDALRRQMQDLEQQLARLNETLRAREETIE 251

Query: 187 KRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMF 237
            ++  + DL ++++  L+  V +           ++ VL +     I+      ++   F
Sbjct: 252 AQQVEIADLGERLNLALAEEVRELSRYRSEFFGRLREVLSDVEDIQIVGDRFRFQSELFF 311

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA-RDNWRLS 288
           + +S+   PE    L ++   +      I         + GHTD  P R      NW LS
Sbjct: 312 ETASADIGPEGRERLDRVARTIREIDARIPGDIGWVLMVEGHTDRRPIRTEQFPSNWELS 371

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
             RA S    L+  GV+  R++  +GF  +    A     +   NRRI+
Sbjct: 372 SARAQSIVNYLISRGVAPRRLAA-AGFGEYHPLDAGSTEAAFSRNRRIE 419


>gi|301309047|ref|ZP_07214992.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3]
 gi|300833073|gb|EFK63698.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3]
          Length = 277

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D        ++     N  +    K   L  ++   L +  + I+     + A N    
Sbjct: 64  RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 123

Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  + +  +L      +++ ++         +  +F   S+         L K+ EVL 
Sbjct: 124 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 183

Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
             +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G   
Sbjct: 184 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 242

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
                 ++     S NRR +I++  +
Sbjct: 243 FMPVADNETADGRSKNRRTEIIMAPK 268


>gi|238757108|ref|ZP_04618295.1| Type VI secretion system OmpA/MotB family protein [Yersinia aldovae
           ATCC 35236]
 gi|238704486|gb|EEP97016.1| Type VI secretion system OmpA/MotB family protein [Yersinia aldovae
           ATCC 35236]
          Length = 438

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 202 TLSGLVADNIVKGVL--FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            L+ L+ D I K ++   ETT    +I     +   MF   S    PE + V++++ + +
Sbjct: 300 RLTILLKDEIAKQLVSVDETTSRSKVI----FKGDTMFQVGSDKVRPEIMSVIERVAQEV 355

Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                 + I GHTD+ P  +    +N  LS  RA +  + + K+G+  D+I +  G    
Sbjct: 356 HRVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFMEKAGIPTDKI-RFEGKGDA 414

Query: 319 RLKIASD--PMNSANRRIDILV 338
           +   ++D     S NRR++I V
Sbjct: 415 QPVSSNDDAAGRSQNRRVEIFV 436


>gi|311746464|ref|ZP_07720249.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1]
 gi|126575359|gb|EAZ79691.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1]
          Length = 282

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 116/272 (42%), Gaps = 11/272 (4%)

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           ++T   G     +   +    +++ ++ +  T+ +   +  +  ++K          Y +
Sbjct: 6   IITGILGASMMVSCVSKKKYTELESNLFKTQTELANTNQEKAELEEKMAIIEARVAEYNN 65

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
                    + L+ ++    D+  ST + K+  ++ N  L  + + K+   +  +   +L
Sbjct: 66  RINSLRAVNDELSGENASLYDIQGSTIMSKNSKEKMNETLAKVDQAKLAEAQTLEDSVNL 125

Query: 196 AKK--ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           A +  +   ++    D     V  +  +T ++IS+ D     +F+  S     +   +LQ
Sbjct: 126 AVEYNLKQNITETTVDGEEDDVQIDIDQTVVMISVSD---KLLFNTGSYRINKKADPLLQ 182

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310
           K+ EV+       + I GHTD         +DNW LS+ RA S  + L ++  V+ +++ 
Sbjct: 183 KLAEVINAEPSLQVMIEGHTDPRSISTGVLQDNWDLSVKRATSIVRKLQENYSVAPEKMI 242

Query: 311 KISGFAHHRLKIASD-PMN-SANRRIDILVED 340
             +G + +   + +D P N + NRR  I++  
Sbjct: 243 A-AGRSSYMPLVENDTPENMAINRRTRIVLIP 273


>gi|74055057|gb|AAZ95862.1| PomB [Aeromonas hydrophila]
          Length = 303

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 13/183 (7%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISSTLSGLVADNIVKGVLFE 218
           ++  + +  E+  LP  S   I  +  K+    LAK   ++  ++  LV   +VK     
Sbjct: 80  EVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQLKESMGTLVDAGVVK---LT 136

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
                + + +    +  +F   S+        VL  + ++L      + +RG+TD     
Sbjct: 137 LDDNWLTVELS---SGLLFGSGSAFMSTNADPVLNTLSDILKPVDNYVRVRGYTDNQQIN 193

Query: 279 N-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           N I R NW LS  RA +   VL+  G++  R+     +        +D       NR++ 
Sbjct: 194 NEIFRSNWTLSAARAEAVLTVLIAKGIAPQRL-AYEAYGEFSPFAGNDSEQGRLQNRKVV 252

Query: 336 ILV 338
           + +
Sbjct: 253 VAI 255



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 1/136 (0%)

Query: 17  IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++K+  +      +L  W + YAD+MT++ A F+V++ +   + D  +A+          
Sbjct: 1   MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +   S G+ + Q     +++     S+ E     S  L   S    KQ       I    
Sbjct: 61  MQPRSDGLLEGQGKSLLNNEVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQL 120

Query: 136 NSQQSEHCKNSLTRDS 151
                      + + +
Sbjct: 121 KESMGTLVDAGVVKLT 136


>gi|283853198|ref|ZP_06370451.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283571456|gb|EFC19463.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 245

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  ++    K  +K+            +   + K+R+    +++       V+   ++GV
Sbjct: 55  DSVQNALGSKGKSKQAAPVSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGV 114

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
           L  T  +G  I+I       +F K       E  V L+ + E L   + E I+IRG TD 
Sbjct: 115 LGATLESG-TITIS-LPTGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERINIRGFTDD 172

Query: 275 SPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
            P    +  RDNW +S  RA +  + ++  G++ +R++  +G A       +      + 
Sbjct: 173 LPPAAGSRFRDNWEVSSLRAVAVLRYMLSLGMAPNRLTA-TGLADLEPLYPNTTPEHRAR 231

Query: 331 NRRIDILVED 340
           N+R++ ++E 
Sbjct: 232 NQRVEFVLER 241



 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 7/159 (4%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           D       W    AD   +LM FF++++ ++  D          F+     L   SKG  
Sbjct: 13  DEAEAPSEWLTTLADMSMLLMTFFILLFSMSTLDVKKF---SDSFDSVQNAL--GSKGKS 67

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
            +  P   S Q    L     I +  +  +       + +   +     L  + +S    
Sbjct: 68  KQAAP--VSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGVLGATLESGTIT 125

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            SL       KD    TD  K   +  + FL   + E+I
Sbjct: 126 ISLPTGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERI 164


>gi|119478742|ref|ZP_01618600.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143]
 gi|119448371|gb|EAW29625.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143]
          Length = 130

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +LA     ISI+GHTD +P +    R NW LS  RA S    L +  +   R  ++SGFA
Sbjct: 1   MLATKKGAISIQGHTDNNPIKTTRFRSNWELSTSRAVSVAHALFEGNILNPRRVEVSGFA 60

Query: 317 HHRLKIASDP--MNSANRRIDILVEDRQG 343
             R   ++D     + NRR++I+++   G
Sbjct: 61  ETRPLSSNDTVEGRAKNRRVEIVIQQGLG 89


>gi|262384794|ref|ZP_06077926.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293510|gb|EEY81446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 277

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 10/207 (4%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +   ++     +    ++ +   L   + ++ +           L      + + +   +
Sbjct: 67  TTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNEKVQNLL 126

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           SS    L+  N    +        + +++ D     +F   S+         L K+ EVL
Sbjct: 127 SSVKDALLGFN-SDELTVTEKNGKVYVAMSD---KLLFQSGSAKVDKRGKEALAKLAEVL 182

Query: 260 A-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
              +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G  
Sbjct: 183 NKQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRG 241

Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341
                  ++     S NRR +I++  +
Sbjct: 242 EFMPVADNETADGRSKNRRTEIIMAPK 268


>gi|91217489|ref|ZP_01254448.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
 gi|91184374|gb|EAS70758.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
          Length = 280

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 15/237 (6%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
            + ++ K  +   +      N+  S +     T +S     L  + D      K      
Sbjct: 32  TTQDELKTAEMKLSACEDEKNNMMSSYESQIKTLESTNSALLSTTGDFATISKKGAENLE 91

Query: 176 PPLSKEKILAMKRKKRLQDLAKK------ISSTLSGLVADNIVKGVLFETTRTGILISII 229
             L   K   ++ K     + KK      + ++L G + +   + +     +  + +SI 
Sbjct: 92  RSLESMKEKDLQIKTMRDAINKKDSVTLALVTSLKGALGNINDEDIQINVEKGVVFVSIS 151

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRL 287
           D     +F         E   VL K+  V+         + GHTD  P  R    DNW L
Sbjct: 152 D---KLLFGAGQFKVTAEAKRVLGKVATVVNDKKDFEFMVEGHTDNDPISRTNIEDNWDL 208

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           S  RA +  ++L     V   R++  +G   +     +D     S NRR  I++  +
Sbjct: 209 STKRATAVVRILQDEYDVDPKRMTA-AGRGEYIPVANNDTEAGQSKNRRTRIVILPK 264


>gi|255322336|ref|ZP_05363482.1| OmpA/MotB [Campylobacter showae RM3277]
 gi|255300709|gb|EET79980.1| OmpA/MotB [Campylobacter showae RM3277]
          Length = 256

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 15/196 (7%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK-----ILAMKRKKRLQDLAKKISSTLSGL 206
           +  K       L  ++   E    P +S E+       + K +  ++   ++   +++ L
Sbjct: 43  DAKKLEAAIGSLSGALGVLEGGAKPDVSAEQNQDDHATSNKERTGVKSNFEQTLRSINEL 102

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST-- 263
           +  +    V FE + +G +I +       +F K S+     + ++ L++I  V+A     
Sbjct: 103 LHASGSPEVTFEESESGFVIRL---PANLLFAKDSAKLQNDDALLFLKRIAMVIAKLPPD 159

Query: 264 EVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            V ++ GHTD+  P     +DNW+LS  RA S    L+K GV   +++  S  A     +
Sbjct: 160 VVANVIGHTDSEQPASTEFKDNWQLSSARAISVVSELIKDGVDPKKLTA-SAKAEFEPFV 218

Query: 323 AS--DPMNSANRRIDI 336
            +  +     NRR++I
Sbjct: 219 TNFTEQGREKNRRVEI 234


>gi|78777214|ref|YP_393529.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
 gi|78497754|gb|ABB44294.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
          Length = 240

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 13/208 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +S  ++    ++   S     L      E S  + +       + E    + R       
Sbjct: 15  SSMDAKKVSEAIGSLSGAMSVLEGGIKTEVSKRRIQESTPIESTDETSEQVNRISAALKE 74

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
             +I    +          V  E  + G +I +     + +F   S++    ++++ L++
Sbjct: 75  MNEIQE--AQASTQGSAAVVSLEEAQDGFVIEL---PASLLFKPGSAVIQNEDSLLFLKR 129

Query: 255 IGEVLAHSTEV--ISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +  ++        +S+ GHTD      +   +DNW LS  RA S  Q L+  GV   RIS
Sbjct: 130 VALIIGELPNETTLSVCGHTDDQGPSVKGPYKDNWELSSARAISVLQELLLDGVDPKRIS 189

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDI 336
             +G+A    K  +   +    NRR+++
Sbjct: 190 A-AGYAEFSPKATNATESGREQNRRVEL 216


>gi|77165507|ref|YP_344032.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|76883821|gb|ABA58502.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
          Length = 286

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 25/279 (8%)

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           +  +F+ F            D +       Q + D ++ ++      + K      +  +
Sbjct: 16  VLGFFSVFLVAACAPPTKPVDLERADAAIEQAQADSNVAQYAPVRLDEAKEALQRAQVAW 75

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           +  E+       +  ++         +       +     K++ +E    L  + + +  
Sbjct: 76  EEDESVEEVEHLAYLAQQRAAIAEVAAADKAAQAE----IKNLGQERQQMLMDVHELEAR 131

Query: 185 AMKRKKRLQDL-AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             K + ++ ++ A K+   L+ L A+          T  G ++++ D     +F+  S+ 
Sbjct: 132 QAKEQAKMAEIRADKLEKRLAELNAEK---------TERGYVLTLGD----ILFEVDSAE 178

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
                +  L ++   L    +  + + GHTD++     A  N  LS  RA S Y  L+ +
Sbjct: 179 LTSGGMQNLFRLVTFLKEYPDREVVVEGHTDST---GSAVYNMELSQRRADSVYLFLVNN 235

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           G++ DRI    G+        ++       NRR++I++ 
Sbjct: 236 GIAPDRIVA-HGYGQGYPVAPNNTTAGRQKNRRVEIVIL 273


>gi|188592172|ref|YP_001796770.1| hypothetical protein RALTA_B0336 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938546|emb|CAP63533.1| Putative transmembrane protein, OmpA/MotB motif [Cupriavidus
           taiwanensis LMG 19424]
          Length = 215

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      + +   L+G +A           T     I I     + +
Sbjct: 43  ELSARLEAEVKQRQEEAQRRETLEKALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S+   PE   +L+ + + L+       E++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSAELQPEGRDLLRSLAQPLSAYLRSRDEILMVSGFTDDQQVREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A     + NRR++I
Sbjct: 153 QRALTVTRTLIDAGIPPSSVFSAA-FGSQQPVTPNADAASRAKNRRVEI 200


>gi|156936052|ref|YP_001439968.1| hypothetical protein ESA_03946 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534306|gb|ABU79132.1| hypothetical protein ESA_03946 [Cronobacter sakazakii ATCC BAA-894]
          Length = 411

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +    +  L  + +  +  +  ++  +++A  ++  L G +   I  G+           
Sbjct: 224 LGDNTSPVLAKIYQTPLPEVTVQQPAREVAPVLN--LRGFLRPEIEAGL-VAVRDEADR- 279

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S++       V+ ++ + + + +  I + G++D  P R+     N+
Sbjct: 280 SVVILKGDGLFASASTVVRGRYEPVIDRVAQAMNNVSGKILVVGYSDNVPIRSARFASNY 339

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSL RA S  ++L       +R+    G         ++     + NRR++I + 
Sbjct: 340 ELSLARAESVQKMLQAHLADPNRVKA-QGRGEMDPIAPNNTPENRARNRRVEITLL 394


>gi|154173933|ref|YP_001408144.1| OmpA/MotB [Campylobacter curvus 525.92]
 gi|153793024|gb|EAU00162.2| OmpA/MotB [Campylobacter curvus 525.92]
          Length = 249

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           S +        +          + +      + + +E+     + K K  +   +    +
Sbjct: 24  SMATMDAKKVEAAVGSLAGALSVLEGGARPDNQDDQESELEKQIKKTKGQSTSSQGEFSE 83

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQ 253
           L+  I   ++ L++ +    +  + +  G +I +    +  +F++  +     +  + L+
Sbjct: 84  LSATIKK-INELLSASGAPEISIDESEDGFIIRL---PSALLFERGKAQIENDDARLFLK 139

Query: 254 KIGEVLAHS--TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +I  V+A       I I GHTD       +I +DNW+LS  RA S  + ++ +GV   R+
Sbjct: 140 RIAMVIAKLTPDVNIDIVGHTDDQRPDMNSIFKDNWQLSTARAISVVEEMVANGVDARRL 199

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDI 336
              SG A +    ++      + N R++I
Sbjct: 200 IA-SGRASYDPFASNQTPEGRAKNNRVEI 227


>gi|114706609|ref|ZP_01439510.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
 gi|114538001|gb|EAU41124.1| flagellar motor protein [Fulvimarina pelagi HTCC2506]
          Length = 344

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 108/341 (31%), Gaps = 18/341 (5%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           + + +   +      +    +  +  +M    V  +            ++  +     + 
Sbjct: 5   RNRRSAGGSAEYWPGFVDALSTLLLAIMFLLSVFVLAQFILSREISGQDEALDRLNGQIA 64

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             ++ +  E++  + S      L       ++       + +         N        
Sbjct: 65  ELTQLLALERSNAQDSEDEIASLRASLGQLEDERSRLQSALDSGSGSAAAANATISALQD 124

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQD 194
              E    S    S+      + + L + I   E+       +++    K     +RL  
Sbjct: 125 NLEEEESISQRARSQVELLNQQLSALRQQIGALESALEASEERDQESQTKIADLGRRLNV 184

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVL 252
              +    L+   +D   +       R  I I       ++  +F   S+         L
Sbjct: 185 ALAQRVQELNRYRSDFFGRLREILADRENIRIVGDRFVFQSEVLFPSGSADLQTAGTDEL 244

Query: 253 QKIGEVL--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302
            ++   +        +    ++ + GHTD  P     +  DNW LS+ RA S  + L+  
Sbjct: 245 DQMASAIRDLAREIPSDINWIVRVDGHTDNVPLSGTGQFDDNWELSVARASSVVKYLISQ 304

Query: 303 GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           GV  + ++  +GF   +     ++  +   NRRI+  + +R
Sbjct: 305 GVQAEHLAA-TGFGEFQPIEEGSTPEVRRRNRRIEFKLTER 344


>gi|295132150|ref|YP_003582826.1| thrombospondin repeat-containing OmpA/MotB family outer
           hypothetical protein [Zunongwangia profunda SM-A87]
 gi|294980165|gb|ADF50630.1| thrombospondin repeat-containing OmpA/MotB family outer membrane
           protein [Zunongwangia profunda SM-A87]
          Length = 470

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 91/268 (33%), Gaps = 25/268 (9%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             + G+ +    P+       D   D        +               E++       
Sbjct: 218 PETPGLPEFNGCPDSDGDGIQDSMDDCPNEAGLAEFNGCPDTDGDGVPDPEDDCPETPGL 277

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
            +   C ++        +D C      +    EEN   P    +    +  +    ++A 
Sbjct: 278 AELNGCPDADGDGIPDNEDECP-----EEAGPEENNGCPYEDTDGDGVIDPEDDCPEVA- 331

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                  G VA+N       E         + +  NT +FD + +    E+   L  I E
Sbjct: 332 -------GTVANNGCPEPTVEVINE-----LNEYSNTVLFDFNKATIRSESEKALNSIIE 379

Query: 258 VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++      +  I GHTD+         N +LS +RA S  Q L+  G+  +R++   G+ 
Sbjct: 380 IMEEYPNTVFHIGGHTDSV---GSDEYNLKLSKERAASVRQFLVDGGIPANRLTS-EGYG 435

Query: 317 HHRLK--IASDPMNSANRRIDILVEDRQ 342
             R     +++     NRR++I ++  +
Sbjct: 436 ESRPIATNSTEAGRQENRRVEISLDKDK 463


>gi|150006781|ref|YP_001301524.1| putative flagellar motor protein MotB [Parabacteroides distasonis
           ATCC 8503]
 gi|149935205|gb|ABR41902.1| putative flagellar motor protein MotB [Parabacteroides distasonis
           ATCC 8503]
          Length = 277

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D        ++     N  +    K   L  ++   L +  + I+     + A N    
Sbjct: 64  RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 123

Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  + +  +L      +++ ++         +  +F   S+         L K+ EVL 
Sbjct: 124 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 183

Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
             +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G   
Sbjct: 184 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 242

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
                 ++     S NRR +I++  +
Sbjct: 243 FMPVADNETADGRSKNRRTEIIMAPK 268


>gi|260427879|ref|ZP_05781858.1| OmpA/MotB domain protein [Citreicella sp. SE45]
 gi|260422371|gb|EEX15622.1| OmpA/MotB domain protein [Citreicella sp. SE45]
          Length = 627

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 16/246 (6%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
            + + G   Q+      +  +     S              +  +    +    +++  E
Sbjct: 383 TEGRAGEAEQRAGAAERQTELLNQQVSALRTQLSQLQGLLDDAKERDVDAQVQLQNLGSE 442

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--I 228
            N  L  ++ E+    + ++  +   +  +  L    ++   +       + G+ I    
Sbjct: 443 LNAALARVAAEERRRRQLEEAERQRLEDQAKDLERYRSEFFGRLREVIGNQEGVRIEGDR 502

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI 280
               +  +F    +       + + KI  +L +           +I + GHTD  P R  
Sbjct: 503 FVFSSEVLFAPGEAELSRSGQMEIAKIASILRNVMADIPEGLDWIIRVDGHTDDIPLRPG 562

Query: 281 AR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           AR  DNW LS  RA S  + L+   G+  DR+S  +GF  ++    SD  ++   NRRI+
Sbjct: 563 ARFSDNWELSQARALSVVRYLVDFLGIPPDRLSA-NGFGQYQPIDPSDTADARAQNRRIE 621

Query: 336 ILVEDR 341
           + + +R
Sbjct: 622 LKLTER 627


>gi|298377743|ref|ZP_06987694.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19]
 gi|298265446|gb|EFI07108.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19]
          Length = 280

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +D        ++     N  +    K   L  ++   L +  + I+     + A N    
Sbjct: 67  RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 126

Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  + +  +L      +++ ++         +  +F   S+         L K+ EVL 
Sbjct: 127 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 186

Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317
             +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G   
Sbjct: 187 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 245

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
                 ++     S NRR +I++  +
Sbjct: 246 FMPVADNETADGRSKNRRTEIIMAPK 271


>gi|296101897|ref|YP_003612043.1| type VI secretion system protein ImpK [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056356|gb|ADF61094.1| type VI secretion system protein ImpK [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 412

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +    N  L  + + ++     ++  + L   ++  L G +   I  G+           
Sbjct: 225 LGDNTNPVLAKIYQSQLPETTIQQPARQLPAVLN--LRGFLKPEIDAGL-VAVKDEADR- 280

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S++       V+ +I + + + +  I + G++D  P R+     N+
Sbjct: 281 SVVILKGDGLFASASTVVRDRYEPVINRIAQAMNNVSGKILVVGYSDNVPIRSARFASNY 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSLDRA S  ++L  S    DR+    G         ++     + NRR++I + 
Sbjct: 341 ELSLDRARSVQKMLQGSLSQPDRVKA-EGRGEINPVAPNNTPENRARNRRVEITLL 395


>gi|325982315|ref|YP_004294717.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531834|gb|ADZ26555.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 277

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 12/193 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS-STLSGLVADNIVK 213
           + +  + +  K+   E       + +++IL   R    ++  ++++   L        ++
Sbjct: 87  QQVAIAQETAKAKIAESVVANADVERDRILLEARTAEAEESKQQVAFDQLLIAQQQKELE 146

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            +  + T  G++I++ D     +F  + +      +  +QK+ + L   T   + I GHT
Sbjct: 147 ELNAKKTERGLVITLND----VLFRTNMAQLEANGVRTVQKLADFLRQYTQHKVLIEGHT 202

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D +        N  LS  RA +    L+ SG+S DR++   G+        +D       
Sbjct: 203 DNT---GSHHYNQELSERRANAVKMALLNSGISNDRVAS-RGYGETLPIAGNDTAEHRQL 258

Query: 331 NRRIDILVEDRQG 343
           NRR++I++ D  G
Sbjct: 259 NRRVEIILSDENG 271


>gi|254433641|ref|ZP_05047149.1| OmpA family protein [Nitrosococcus oceani AFC27]
 gi|207089974|gb|EDZ67245.1| OmpA family protein [Nitrosococcus oceani AFC27]
          Length = 293

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 25/279 (8%)

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           +  +F+ F            D +       Q + D ++ ++      + K      +  +
Sbjct: 23  VLGFFSVFLVAACAPPTKPVDLERADAAIEQAQADSNVAQYAPVRLDEAKEALQRAQVAW 82

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           +  E+       +  ++         +       +     K++ +E    L  + + +  
Sbjct: 83  EEDESVEEVEHLAYLAQQRAAIAEVAAADKAAQAE----IKNLGQERQQMLMDVHELEAR 138

Query: 185 AMKRKKRLQDL-AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             K + ++ ++ A K+   L+ L A+          T  G ++++ D     +F+  S+ 
Sbjct: 139 QAKEQAKMAEIRADKLEKRLAELNAEK---------TERGYVLTLGD----ILFEVDSAE 185

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
                +  L ++   L    +  + + GHTD++     A  N  LS  RA S Y  L+ +
Sbjct: 186 LTSGGMQNLFRLVTFLKEYPDREVVVEGHTDST---GSAVYNMELSQRRADSVYLFLVNN 242

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           G++ DRI    G+        ++       NRR++I++ 
Sbjct: 243 GIAPDRIVA-HGYGQGYPVAPNNTTAGRQKNRRVEIVIL 280


>gi|167921374|ref|ZP_02508465.1| hypothetical protein BpseBC_22683 [Burkholderia pseudomallei
           BCC215]
          Length = 396

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 6/218 (2%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 180 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 239

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 240 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 297

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q+L  +
Sbjct: 298 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 357

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           GV   R+  + G           +    + NRR++I V
Sbjct: 358 GVPASRLEAL-GKGGVEPIGDNRTPQGRALNRRVEITV 394


>gi|332882653|ref|ZP_08450265.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679453|gb|EGJ52438.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 290

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
              N     N+QQ  H   +LT  ++KG +     +LEKS+       L   +    +  
Sbjct: 63  KNQNELLKENNQQLIHNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAVTR 117

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +    L      +  +L G++ +   + V  +  +  + I+I D+    +F   S     
Sbjct: 118 RDSVNLA-----LVQSLKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTISK 169

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-G 303
               VL+K+ +V+ +  +    + GHTD    + +  RDNW LS+ RA    +VL    G
Sbjct: 170 NAKNVLEKVAKVVKNKPDFEFMVEGHTDDVRIKKDCIRDNWDLSVMRATEIVRVLQNDFG 229

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           ++ +R++  +G +++    ++      + NRR  I+V  +
Sbjct: 230 IAPERMTA-AGRSYYVPVASNTTAEGRAQNRRTRIVVLPK 268


>gi|291617923|ref|YP_003520665.1| YtxE [Pantoea ananatis LMG 20103]
 gi|291152953|gb|ADD77537.1| YtxE [Pantoea ananatis LMG 20103]
 gi|327394329|dbj|BAK11751.1| flagellar motor protein YtxE [Pantoea ananatis AJ13355]
          Length = 413

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIV 250
           +I +          +K  L      G++        S++  +   +F   S+        
Sbjct: 246 QIRNPAPPPPPSLNLKSFLKPEIDEGLVAVRDEADQSVVTLKGDGLFASGSTEVRGRYDA 305

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+Q++ E + + +  I + G++D  P R+     N+ LSL RA S   +L K      R+
Sbjct: 306 VIQRVAEAMNNVSGKILVVGYSDNVPIRSARFASNYELSLARAQSVQTLLQKQLAKPSRV 365

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVE 339
               G       + +      + NRR++I ++
Sbjct: 366 KA-EGRGETHPLVPNTSAENRARNRRVEITLQ 396


>gi|305665914|ref|YP_003862201.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170]
 gi|88710689|gb|EAR02921.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170]
          Length = 446

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 28/270 (10%)

Query: 78  TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131
           T   GI+D+ +  PE +     +   D        +K+S     GS           + +
Sbjct: 190 TDGDGIYDKDDACPEVAGLEAFNGCPDADGDGIEDSKDSCPNAAGSKEMNGCPDADGDGV 249

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189
               ++  +E    +L    +   D     D          EN   P   K+    + + 
Sbjct: 250 ADKDDACPNEAGTAALAGCPDADGDGVADKDDSCPNEAGPSENKGCPWTDKDGDSVLDKD 309

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +  D+A  +++     V + + K              + D   T +FD   S    E+ 
Sbjct: 310 DQCPDVAGTVANNGCPEVTEEVQK-------------QLNDYARTILFDTGKSSIKAEST 356

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V+  I ++L+       ++ GHTD+      A+ N  LS  RA S    L+  G+   R
Sbjct: 357 SVMVDIIQILSEYPTAKFTVEGHTDSV---GSAKLNQTLSESRANSVRDFLIDKGIGSSR 413

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           +S I G+   +    ++  +    NRR++I
Sbjct: 414 LSAI-GYGEDKPIATNNTRSGRKQNRRVEI 442


>gi|213961761|ref|ZP_03390027.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213955550|gb|EEB66866.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 290

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
              N     N+QQ  +   +LT  ++KG +     +LEKS+       L   +    +  
Sbjct: 63  KNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAVTR 117

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +    L      +  +L G++ +   + V  +  +  + I+I D+    +F   S     
Sbjct: 118 RDSVNLA-----LVQSLKGVLGNLDDQDVDVKVEKGVVFINISDKM---LFSSGSYTISK 169

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-G 303
               VL+K+ +V+ +  +    + GHTD    +    RDNW LS+ RA    +VL K  G
Sbjct: 170 NAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTGCIRDNWDLSVMRATEIVRVLQKDFG 229

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           V+ +R++  +G +++    ++   N    NRR  I+V  +
Sbjct: 230 VAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVVLPK 268


>gi|303248273|ref|ZP_07334535.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490298|gb|EFL50210.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 246

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
            KS          P     +   + ++R+    +++       V+   + GV+  T   G
Sbjct: 64  NKSKAITTGPIATPDMSTLVEQARIRQRIIGEQRRVYDQFRSYVSTKGLDGVVAATLEAG 123

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASP--FRNI 280
             I+I       +F K       E    L+ + + L   + E I+IRG TD  P    + 
Sbjct: 124 -KITIGFPAG-VLFPKDGVDLTEEGKQRLRTVYDFLIKTAGERINIRGFTDNQPPGAGSR 181

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RDNW +S  RA +  + ++  G+  +R++  +G A       +D     + N+R++ ++
Sbjct: 182 FRDNWEVSSLRAVAVLRYMVSLGMPPNRLTA-TGLADLEPLYPNDTPAHRARNQRVEFVL 240

Query: 339 ED 340
           E 
Sbjct: 241 ER 242


>gi|84514671|ref|ZP_01002035.1| flagellar motor protein [Loktanella vestfoldensis SKA53]
 gi|84511722|gb|EAQ08175.1| flagellar motor protein [Loktanella vestfoldensis SKA53]
          Length = 533

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 19/195 (9%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTG 223
             +N      +    +   L    + RL+  A ++ +    L    +   G L +     
Sbjct: 340 AQLNTALARVVSEERQRIALEEAERSRLEAEAARLQAEAENLERFRSDFFGQLRQVLEGQ 399

Query: 224 ILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGH 271
             I I   R    +  +F+   +   P+    +  +  +L             +I + GH
Sbjct: 400 DRIRIEGDRFVFSSEVLFEVGRADLSPQGRDEIANVAGILNDIADDIPAGIDWIIRVDGH 459

Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN 328
           TD +P     R  DNW LS  RA S  + ++   G+   R++  +GF  ++    +D   
Sbjct: 460 TDDNPIAAGGRFADNWELSQARALSVVRFMVDDLGIPPMRLAA-NGFGEYQPLNTADTAQ 518

Query: 329 SA--NRRIDILVEDR 341
           +   NRRI++ + +R
Sbjct: 519 ARAQNRRIELKLTER 533


>gi|255016489|ref|ZP_05288615.1| putative flagellar motor protein MotB [Bacteroides sp. 2_1_7]
          Length = 280

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 10/207 (4%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +   ++     +    ++ +   L   + ++ +           L      + + +   +
Sbjct: 70  TTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNEKVQNLL 129

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           SS    L+  N    +        + +++ D     +F   S+         L K+ EVL
Sbjct: 130 SSVKDALLGFN-SDELTVTEKNGKVYVAMSD---KLLFQSGSARVDKRGKEALAKLAEVL 185

Query: 260 A-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
              +   + I GHTD+ P      +DNW LS+ RA S  ++L K  GV+  +I +  G  
Sbjct: 186 NKQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRG 244

Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341
                  ++     S NRR +I++  +
Sbjct: 245 EFMPVADNETADGRSKNRRTEIIMAPK 271


>gi|238750197|ref|ZP_04611700.1| Type VI secretion system OmpA/MotB family protein [Yersinia rohdei
           ATCC 43380]
 gi|238711741|gb|EEQ03956.1| Type VI secretion system OmpA/MotB family protein [Yersinia rohdei
           ATCC 43380]
          Length = 457

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           ++  E+  L  ++  +   + ++  + +   +++  L   +A  +V   + ETT    +I
Sbjct: 288 LSVPESDLLKRMTVLQRPVIAQRPAVVEQKLRLAVLLKDEIAKQLVS--VDETTSQSKVI 345

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285
                +   MF   S    PE I V+ ++ + +      + I GHTD+ P  +    +N 
Sbjct: 346 ----FKGDTMFQVGSDKVRPEIINVIDRVAQEVHRVQGAVLIVGHTDSMPINKPGFPNNQ 401

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            LS  RA +   ++ K+G+  D+I +  G    +           + NRR++I V
Sbjct: 402 VLSEKRAANVAHLMEKAGIPTDKI-RFEGKGDIQPVGSNGDAAGRAQNRRVEIFV 455


>gi|189468503|ref|ZP_03017288.1| hypothetical protein BACINT_04906 [Bacteroides intestinalis DSM
           17393]
 gi|189436767|gb|EDV05752.1| hypothetical protein BACINT_04906 [Bacteroides intestinalis DSM
           17393]
          Length = 299

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
             +  + Q  Q Q  E      S   +    + +          L  S D     N + N
Sbjct: 42  TALDKSYQDAQIQLAEYRTQSKSLEDRLNEARKNNQELRNSYATLQGSLDKSLQQNSQGN 101

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGIL 225
             +  L  E   + +  K+L D   K       +++ L+  ++   +K V  +  +  + 
Sbjct: 102 INISKLVDEINASNRYIKQLVDTKSKSDSLNVVLTNNLTRSLSREELKEVDVKVLKGVVY 161

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RD 283
           IS+ D     ++   S          L KI +++       + + G+TD  P      R+
Sbjct: 162 ISLADNM---LYKSGSYEINERAGETLSKIAKIITDYKDYEVLVEGNTDNVPISRPNIRN 218

Query: 284 NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           NW LS  RA S  Q L  + GV   R+S  +G   +     +D       NRR  I++  
Sbjct: 219 NWDLSALRASSVVQALQNQYGVDPKRLSA-AGRGEYNPLTDNDTELGKQRNRRTQIIITP 277

Query: 341 R 341
           +
Sbjct: 278 K 278


>gi|310765213|gb|ADP10163.1| OmpA family protein [Erwinia sp. Ejp617]
          Length = 413

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIVV 251
           I +      A   +K  L      G+++       S++  +   +F  +S+        V
Sbjct: 247 IHNPAPPQPAAVNLKTFLKPEIEQGLVVVRDEADRSVVTLKGDGLFTSASTDVRGRYAEV 306

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++   + + +  I + G++D  P R+     N+ LSL RA S  + L +      R+ 
Sbjct: 307 LDRVAAAMNNVSGRILVVGYSDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVK 366

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339
              G         ++     + NRR++I + 
Sbjct: 367 A-EGRGDSNPLAPNNSAGNRARNRRVEITLL 396


>gi|259907293|ref|YP_002647649.1| hypothetical protein EpC_06170 [Erwinia pyrifoliae Ep1/96]
 gi|224962915|emb|CAX54396.1| Type VI secretion system, OmpA/MotB [Erwinia pyrifoliae Ep1/96]
 gi|283477112|emb|CAY73012.1| putative type VI secretion system, core protein [Erwinia pyrifoliae
           DSM 12163]
          Length = 413

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIVV 251
           I +      A   +K  L      G+++       S++  +   +F  +S+        V
Sbjct: 247 IHNPAPPQPAAVNLKTFLKPEIEQGLVVVRDEADRSVVTLKGDGLFTSASTDVRGRYAEV 306

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++   + + +  I + G++D  P R+     N+ LSL RA S  + L +      R+ 
Sbjct: 307 LDRVAAAMNNVSGRILVVGYSDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVK 366

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339
              G         ++     + NRR++I + 
Sbjct: 367 A-EGRGDSNPLAPNNSAGNRARNRRVEITLL 396


>gi|315223432|ref|ZP_07865289.1| OmpA family protein [Capnocytophaga ochracea F0287]
 gi|314946605|gb|EFS98596.1| OmpA family protein [Capnocytophaga ochracea F0287]
          Length = 290

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 19/222 (8%)

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                N     N+QQ  +   +LT  ++KG +     +LEKS+       L   +    +
Sbjct: 61  SMKNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAV 115

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +    L      +  +L G++ +   + V     +  + I+I D+    +F   S   
Sbjct: 116 TRRDSVNLA-----LVQSLKGVLGNLDDQDVDIRVEKGVVFINISDKM---LFSSGSYTI 167

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302
                 VL+K+ +V+ +  +    + GHTD    +    RDNW LS+ RA    +VL K 
Sbjct: 168 SKNAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKD 227

Query: 303 -GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
            GV+ +R++  +G +++    ++   N    NRR  I+V  +
Sbjct: 228 FGVAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVVLPK 268


>gi|170693231|ref|ZP_02884391.1| type IV / VI secretion system protein, DotU family [Burkholderia
           graminis C4D1M]
 gi|170141761|gb|EDT09929.1| type IV / VI secretion system protein, DotU family [Burkholderia
           graminis C4D1M]
          Length = 446

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +  LP+ I +L+++   L      + + GHTD  P  ++  +DN+ LS  RA +
Sbjct: 337 LFPSGGADLLPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 396

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASD--PMNSANRRIDIL 337
              VL   G+ + R  + +G    +     +D     + NRR++IL
Sbjct: 397 TLAVL-AQGLDDPRRLEANGAGSSQPIATPADLPANRARNRRVEIL 441


>gi|294626797|ref|ZP_06705390.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598913|gb|EFF43057.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 419

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS      +++  + E       + +    +  MF        P+   V+ +I  
Sbjct: 277 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGVIAQIAA 331

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      + + GHTD  P R++   DN+ LS  RA +  QVL     +  R+   +G  
Sbjct: 332 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEA-TGAG 390

Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342
             +     +      + NRR++IL +  +
Sbjct: 391 DSQPIAQPVQLPANRARNRRVEILFQPGE 419


>gi|223040101|ref|ZP_03610381.1| OmpA/MotB [Campylobacter rectus RM3267]
 gi|222878578|gb|EEF13679.1| OmpA/MotB [Campylobacter rectus RM3267]
          Length = 256

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           +        +   + K +  ++   ++   +++ L+  +    V FE + +G +I +   
Sbjct: 68  DAGAEQNQDDHATSNKERTGVKSNFEQTLRSINELLHASGSPEVTFEESESGFVIRL--- 124

Query: 232 RNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST--EVISIRGHTDA-SPFRNIARDNWRL 287
               +FDK S+     + ++ L++I  V+A      V ++ GHTD+  P     +DNW+L
Sbjct: 125 PANLLFDKDSARLQNDDALLFLKRIAMVIAKLPPDVVANVIGHTDSEQPGSAEFKDNWQL 184

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           S  RA S    L+K GV   +++  S  A       +  +     NRR++I
Sbjct: 185 SSARAISVVTELIKDGVDPKKLTA-SAKAEFEPFATNFTEQGREKNRRVEI 234


>gi|317153383|ref|YP_004121431.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943634|gb|ADU62685.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 254

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 8/253 (3%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           ++   ++   + + +   D  +                F++     +E  +         
Sbjct: 2   ARKAEEVVQRKPLREPPRDEGLPPWMATFADMMTLLLCFFVLLLSFAEQSEEKYRDALGS 61

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
            K      +L    +    +     SKE +  +   +RL         +L       + +
Sbjct: 62  LKGAFGVRELRTVSDDMAPFNTSQSSKELMAKISTDERLLLGVVMRIKSLMEDEDIKLKE 121

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           G      R G+   I    +  +F   ++    +   VL K+  VL      + +RGHTD
Sbjct: 122 GTGVAADRDGV---IFSADSAMLFAPGTADLAADADTVLDKVVTVLKDYNLSLVVRGHTD 178

Query: 274 ASPFRNI-ARDNWRLSLDRAYSAY-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329
             P   +    NW LS  RA  A   +L +SG+   R   + G+A  R    +  D    
Sbjct: 179 DRPISTLKFPSNWELSSARAAVALDYILRESGIGISRAKAV-GYADTRPAAPNDSDENRL 237

Query: 330 ANRRIDILVEDRQ 342
            N+R++  +   Q
Sbjct: 238 KNQRVEFYLHMPQ 250


>gi|294666305|ref|ZP_06731554.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603907|gb|EFF47309.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 419

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS      +++  + E       + +    +  MF        P+   V+ +I  
Sbjct: 277 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGVIAQIAA 331

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      + + GHTD  P R++   DN+ LS  RA +  QVL     +  R+  I G  
Sbjct: 332 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEAI-GAG 390

Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342
             +     +      + NRR++IL +  +
Sbjct: 391 DSQPIAQPVQLPANRARNRRVEILFQPGE 419


>gi|116620394|ref|YP_822550.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223556|gb|ABJ82265.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 545

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 9/233 (3%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           K  +  +    +Q+++ Q   +     +  +Q+E  K          +        E++ 
Sbjct: 303 KARLADEQARMDQQRRAQAEADQRASETARRQAEQAKLEADNARASAEKAAADAARERAA 362

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
                       +  +    R K+    A+   + L   + + +   +    T  G++I+
Sbjct: 363 ADAARLAAEQQQQAAMAEADRAKQGMQKAEAEKAELRERLRNQLNMILETRETARGLIIN 422

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I D     +FD +     P     L K+  +L       I + GHTD+    +    N +
Sbjct: 423 ISD----VLFDFNKYTLKPGAREKLAKVSGILLAYPGLNIKVEGHTDS--IGSDEY-NQK 475

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           LS  RA S    L    V  D +S +  G +       +      NRR++++V
Sbjct: 476 LSESRASSVRDYLTSQNVPADSVSAVGLGKSDPVASNDTAAGRQRNRRVELVV 528


>gi|296126061|ref|YP_003633313.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
 gi|296017877|gb|ADG71114.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
          Length = 266

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVL 252
           + + I   ++ L A+   K V  E    G +IS+   +    F+ +S+        +   
Sbjct: 102 MGRSIDKAVAVLEAEIKSKKVRVEEDERGFVISLGADQ---YFESASTNIIDSQNNVETF 158

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDRAYSAYQVL----MKS 302
            K+  +L+     I I GHTD+              +NW LS  RA    + L      +
Sbjct: 159 IKLASLLSGIPNEIRIEGHTDSGSIIPGSITEQKFGNNWGLSSARAMVILEKLFENDQTA 218

Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +  ++   I+G+A  R   ++D     + NRR+DI++  
Sbjct: 219 KLDRNK-YSIAGYADTRPVASNDLPDGRALNRRVDIVIVR 257



 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 7/178 (3%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWII--NATDDDTKKAIEQYFNP-----FGK 74
             D    +   W   Y DF+T+++ FF+++      + +D   + I   F        G 
Sbjct: 16  KADTPGPSAPLWLQTYGDFVTLVLTFFVMLLATMSTSVNDSAIQLIATAFQGSFGVMPGG 75

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             ++ SK ++   N     S ++            +V      + + +  +     +  L
Sbjct: 76  ATLSQSKLVYGGANADTLPSTDRGYSMGRSIDKAVAVLEAEIKSKKVRVEEDERGFVISL 135

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
              Q  E    ++       +   K   L   I  E        S   I     +++ 
Sbjct: 136 GADQYFESASTNIIDSQNNVETFIKLASLLSGIPNEIRIEGHTDSGSIIPGSITEQKF 193


>gi|325915795|ref|ZP_08178096.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537992|gb|EGD09687.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 412

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292
             MF        PE   ++ +I   +      + + GHTD  P R++   DN+ LS  RA
Sbjct: 301 AAMFASGGVEVEPEQRGLIAQIAAAIDQLPGRVIVVGHTDDVPVRSLRFADNYALSGARA 360

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVEDRQ 342
            +  Q+L     +  R+  + G    +     +      + NRR++IL +  +
Sbjct: 361 AAVAQLLRTHLATPGRVEAL-GAGDSQPVAQPVQLPANRARNRRVEILFQPGE 412


>gi|304408922|ref|ZP_07390543.1| type IV / VI secretion system protein, DotU family [Shewanella
           baltica OS183]
 gi|307302925|ref|ZP_07582680.1| type IV / VI secretion system protein, DotU family [Shewanella
           baltica BA175]
 gi|304352743|gb|EFM17140.1| type IV / VI secretion system protein, DotU family [Shewanella
           baltica OS183]
 gi|306913285|gb|EFN43707.1| type IV / VI secretion system protein, DotU family [Shewanella
           baltica BA175]
          Length = 436

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 17/185 (9%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            +S  + + +N       P   +     +    RLQ L       L   +   +++ +  
Sbjct: 265 SQSDAVNRQMNSLIVDNTPQALQVSASTVHEGARLQQL-------LQTEIGMQLLEVIEL 317

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                 + I +       +F    +        V+ KI   L  +   I + G+TD  P 
Sbjct: 318 ---PDRVRIRV---GLHHLFTTGGTDINEGFQPVIVKIARALEGTKGRILVNGYTDDQPI 371

Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
             +    NW LSL RA +    L        R+ +  G         +D     + NRR+
Sbjct: 372 FTSRYPSNWHLSLARANAMADSLAAGADLHGRL-QPEGRGEAEPVAPNDTPENRALNRRV 430

Query: 335 DILVE 339
           +I + 
Sbjct: 431 EIDLL 435


>gi|224436415|ref|ZP_03657435.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
 gi|313142933|ref|ZP_07805126.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
 gi|313127964|gb|EFR45581.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818]
          Length = 250

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
            P  S +  +     +       + SS  +  +     +G + E    G+ + +    + 
Sbjct: 62  SPLPSNQDDINDSEVENESGAISQTSSVTTAEIQQMAEEGGILEQMEMGLSLRL---PSN 118

Query: 235 PMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTD--ASPFRNIARDNWRLSL 289
             F+  S+      + + LQ++  ++        I +RG+TD  + P  +  +DN+ LS 
Sbjct: 119 LFFESGSAEINNSDVYLYLQRMTAIIKKLPDYVKIDVRGYTDNASLPIGSRYKDNYELSS 178

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            R+ +  + L+K+G+S +RI   SG+  H+    +D     + N R++I 
Sbjct: 179 ARSLAVMKNLIKNGISPERI-SFSGYGEHQAVAPNDSTINRAKNNRVEIF 227



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-----P 71
           + KK    + P     W + YADF+++L+A F+ +W I++T     +A++  F       
Sbjct: 1   MAKKKKCPECPA-GEKWAVPYADFLSLLLALFIALWAISSTGSADSEALKTEFVKIFDFT 59

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
               L +    I D +   E  + ++        I + + +  I    +     RL +N+
Sbjct: 60  LTSPLPSNQDDINDSEVENESGAISQTSSVTTAEIQQMAEEGGILEQMEMGLSLRLPSNL 119

Query: 132 FYLSNSQQ 139
           F+ S S +
Sbjct: 120 FFESGSAE 127


>gi|108763506|ref|YP_633737.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467386|gb|ABF92571.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 2699

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 26/302 (8%)

Query: 48   FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107
            F ++   + + + +++       P     +        + +    +     D   DE   
Sbjct: 2404 FRLLAGFSYSPEPSRE-------PKQVAPVDTDGDGILDIDDACPTEPEDKDGFQDEDGC 2456

Query: 108  KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD----- 162
             +  +   G  +           +    ++                G  +    D     
Sbjct: 2457 PDPDNDADGIPDTADTCPNEPETVNGFEDTDGCPDVAPPPPPVDTDGDGIMDPDDRCPND 2516

Query: 163  LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             E     ++    P    ++      + +  +  + I+        D        +    
Sbjct: 2517 PEDKDGFQDEDGCPDPDNDRDGIPDAEDKCPNEPETINGFQDE---DGCPDKGKVKVLVD 2573

Query: 223  GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI 280
            G  I I++      F     + L  +  +L+++  VL  + +V  + I GHTD       
Sbjct: 2574 GERIVILE---KVYFATGKDVILARSHPLLKQVAAVLRANPQVELVRIEGHTDDQ---GN 2627

Query: 281  ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
               N  LS  RA +    L+K G++E R+  + G+   +    +        NRR+   +
Sbjct: 2628 DAKNLDLSQRRANNVRAFLVKEGIAEGRMEAV-GYGETKPVDTNKTAKGRENNRRVGFTI 2686

Query: 339  ED 340
              
Sbjct: 2687 LR 2688


>gi|302343736|ref|YP_003808265.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640349|gb|ADK85671.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 260

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L G+V +N +   +      G+   +I+     +F   S+   P  +  L ++  V+   
Sbjct: 89  LRGMVFENRLDDQVRLLRSQGMRTVVINAD--MLFAPGSAKLSPNILPFLDEVAAVIKDR 146

Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              +S+ GHTD  P+R    +DNW LS  RA S    L+  GVS  R++   G A  +  
Sbjct: 147 AYPLSVYGHTDDEPWRGKGGQDNWTLSAQRALSVVAHLVSRGVSASRLAA-FGLAGTQPI 205

Query: 322 IASDP--MNSANRRIDIL 337
            ++        N R+ ++
Sbjct: 206 ASNTTAEGRRQNNRVALV 223


>gi|162449977|ref|YP_001612344.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161160559|emb|CAN91864.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 274

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 18/234 (7%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q K  +         +   Q++  K+ L   + + + L              N  L   +
Sbjct: 33  QAKVREIEGLKTQLSAEQAQNKKAKSELDEAAARIEQLKSQLKAAGVDISNLNANLEQQA 92

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +      +R ++L+D+ K+       L A   + G+        ++I +       +FD 
Sbjct: 93  RALEDFRRRAQQLEDIKKRFEVLRDKLQALTKL-GLSVTVRNNRMVIQL---PGDVLFDS 148

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
                  E   +L K+ EV+ + +        + GHTD +P      +DNW LS+ RA  
Sbjct: 149 GRETLKKEGQEILLKVAEVIRNDSGLSARSFQVAGHTDNAPLAGGRFKDNWGLSVMRARE 208

Query: 295 AYQVLMK------SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
               L++       G+  +R S  SG+        +D      ANRR +++V  
Sbjct: 209 VLAFLLQPEDKGGGGLKPERWSA-SGYGDTDPVKPNDTPENKQANRRCELVVLP 261


>gi|157371239|ref|YP_001479228.1| hypothetical protein Spro_2999 [Serratia proteamaculans 568]
 gi|157323003|gb|ABV42100.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 406

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +L   +   I +G++         + I+  +   +FD +++      I V+ +I   +  
Sbjct: 250 SLKSFLRKEIAEGLVVVRDEAQQSVVIL--KGDGLFDSAATTVRGNYIPVIDRIAAAMNG 307

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +  I + G++D  P R+     NW LSL RA +    L K   +  R+    G      
Sbjct: 308 VSGKILVTGYSDNLPIRSARFASNWELSLARADAVSAQLQKHLDNPQRVKA-EGRGESNP 366

Query: 321 KIASDP--MNSANRRIDILVE 339
              ++     + NRR++I + 
Sbjct: 367 VAPNNSKVNRALNRRVEITLL 387


>gi|297569175|ref|YP_003690519.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925090|gb|ADH85900.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 251

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 16/165 (9%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           + +  + ++ +Q L +++       V ++    V                R++  F    
Sbjct: 82  ETVPFEVREPIQQLFRELEDAGLVTVEEDEAGEVTVRI------------RDSVAFAFGR 129

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299
           +    +   +L ++GE+L  S   + + GHTD  P R  A    NW LS  R+ +  + L
Sbjct: 130 ADLKEDFKALLDQLGEILVTSQATMVVEGHTDNVPMRPGAPFSSNWALSAARSVAVVEYL 189

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           ++             +A  R    +D     +ANRR++  +   +
Sbjct: 190 LEHYEIPRDRLAAEAYADSRPVAPNDTAEGRAANRRVEFRIRPGE 234


>gi|300727657|ref|ZP_07061045.1| OmpA family protein [Prevotella bryantii B14]
 gi|299775083|gb|EFI71687.1| OmpA family protein [Prevotella bryantii B14]
          Length = 286

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 15/244 (6%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           +N      G+    K+     N        Q ++  K+  +  S   K L  +     +I
Sbjct: 31  QNENRELTGNYQNAKEQLAAANARVTSLEDQLAQSKKDYASLQSSLDKSLTNANSNNINI 90

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
           +K  +         + L   + K    L   +++ L+  ++ + +K V  +  +  + IS
Sbjct: 91  SKLVDQINESNQYIRHLVEVKSKS-DSLNMVLTNNLTRSLSKDEMKEVDVQVLKGVVYIS 149

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA----- 281
           + D     ++   S          L KI +++       + I G+TD  P    A     
Sbjct: 150 LADNM---LYKSGSYEVNDRAEQTLSKIAKIIKDYKDYDVLIEGNTDNVPVNTKAVSMKN 206

Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            R+NW LS  RA S  Q L    G++  R++   G   +     +D       NRR  I+
Sbjct: 207 IRNNWDLSALRASSVVQYLQDHYGINPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQII 265

Query: 338 VEDR 341
           +  +
Sbjct: 266 ITPK 269


>gi|78356582|ref|YP_388031.1| motB protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218987|gb|ABB38336.1| motB protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 245

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           + +++ +K+L +  +K+ S +   +    V+GV+      G+ I+I       +F+K+S 
Sbjct: 82  LESVRLQKQLIEAQRKVYSDVRTFLNRKGVEGVIGAVFDEGV-ITIKVPAG-VLFEKNSV 139

Query: 243 IPLPETIVVLQKIGEV-LAHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVL 299
               + + +L+ + +  L    + I+IRG+TD + P      RDNW +S  RA +  +  
Sbjct: 140 DISADGLSMLEGLNDFFLKKKDQSINIRGYTDDSVPAAGSRFRDNWEISALRAVNVLRFF 199

Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
           +KSG+   R++  +G         +  +   + NRR++ ++E R G
Sbjct: 200 LKSGIEPGRLTA-TGLGDLDPLFPNTSEENRAKNRRVEFVLERRVG 244


>gi|78049766|ref|YP_365941.1| hypothetical protein XCV4210 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038196|emb|CAJ25941.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 418

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS      +++  + E       + +    +  MF        P+   ++ +I  
Sbjct: 276 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGLIAQIAA 330

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      + + GHTD  P R++   DN+ LS  RA +  QVL     +  R+  I G  
Sbjct: 331 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVDAI-GAG 389

Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342
             +     +      + NRR++IL +  +
Sbjct: 390 DSQPIARPVQLPANRARNRRVEILFQPGE 418


>gi|307726202|ref|YP_003909415.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1003]
 gi|307586727|gb|ADN60124.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1003]
          Length = 445

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
           +F    +   P+ I +L+++   L      + + GHTD  P  ++  +DN+ LS  RA +
Sbjct: 336 LFPSGGADLAPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 395

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASD--PMNSANRRIDIL 337
              VL   G+ + R  + +G    +     +D     + NRR++IL
Sbjct: 396 TLAVL-AQGLDDPRRLEANGAGSSQPVATPADLPANRARNRRVEIL 440


>gi|90021170|ref|YP_526997.1| hypothetical protein Sde_1523 [Saccharophagus degradans 2-40]
 gi|89950770|gb|ABD80785.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 469

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
           N  +F   +    P    +L KI + L      I + GHTD    R      NW LSL R
Sbjct: 348 NQELFTSGNINITPSFEPILDKIAKALEAIPGRIIVSGHTDNESIRTPRYPSNWHLSLAR 407

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           A    + L  S   + R+    G   +   +++D       NRR+ I V   QG
Sbjct: 408 ASEVVKYLAASADLKSRLLP-EGRGANEPIMSNDTAAGRAHNRRVVIDVYYHQG 460


>gi|300870393|ref|YP_003785264.1| flagellar motor protein MotB [Brachyspira pilosicoli 95/1000]
 gi|300688092|gb|ADK30763.1| flagellar motor protein MotB [Brachyspira pilosicoli 95/1000]
          Length = 266

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
              + A+    R   + + +   +S L ++     V       G +I++   +    F+ 
Sbjct: 87  GANVDALPAMDRGYSMGRSVDKAVSVLESEIKNNKVRVSEDERGFVITLGADQ---YFES 143

Query: 240 SSSIP--LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDR 291
           +S+             KI  VL+     I I GHTD+              +NW LS  R
Sbjct: 144 ASTNIVNTQNNTETFIKIASVLSTLPNDIRIEGHTDSGAILEGSITEQWFGNNWGLSTAR 203

Query: 292 AYSAYQVL----MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           A    + L        +  ++   ++G+A  R   ++D     + NRR+DI+V  
Sbjct: 204 AIVVLEKLFESDQTGKLDINK-YSVAGYADTRPVASNDLPDGRALNRRVDIVVVR 257


>gi|239905906|ref|YP_002952645.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239795770|dbj|BAH74759.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 252

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           +   K K+R+    +++       V+   + GV+  T   G  I+I       +F K   
Sbjct: 89  VEQAKLKQRIIGEQRRVYDQFRTYVSSKGLDGVVAATLEAG-KITIGFPAG-VLFPKDGV 146

Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVL 299
               E    L+ + + L   + E I+IRG TD  P    +  RDNW +S  RA +  + +
Sbjct: 147 DLTEEGKGKLRTLFDFLIKAAGERINIRGFTDNEPPGAGSRYRDNWEISSLRAVAVLRYM 206

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +  G+  +R++  +G A       +D     + N+R++ ++E 
Sbjct: 207 VSLGMPPNRLTA-TGLADLEPLYPNDTPEHRARNQRVEFVLER 248


>gi|325925657|ref|ZP_08187038.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
 gi|325543930|gb|EGD15332.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas
           perforans 91-118]
          Length = 425

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS      +++  + E       + +    +  MF        P+   ++ +I  
Sbjct: 283 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGLIAQIAA 337

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      + + GHTD  P R++   DN+ LS  RA +  QVL     +  R+  I G  
Sbjct: 338 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVDAI-GAG 396

Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342
             +     +      + NRR++IL +  +
Sbjct: 397 DSQPIARPVQLPANRARNRRVEILFQPGE 425


>gi|313200972|ref|YP_004039630.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312440288|gb|ADQ84394.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 444

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 193 QDLAKKISSTLSGLVAD---NIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSI 243
           ++L K+IS+      A     + + +  E  +  + +       I+  +   MF    ++
Sbjct: 274 ENLQKRISAIYLMEPAHSSLRLSELLATEIAQGKVRVEEDSAHAIVVFKGDGMFSGGLAM 333

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLM 300
             P T  +++K+G  +A     + + GH+D           ++N  LS  RA +  QV+ 
Sbjct: 334 LSPATREIVEKVGRAVADVQGRVRVVGHSDNQKLSGKNPEFKNNQILSEKRAQAVVQVMT 393

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + GV   RI  ++G    +   ++      + NRR++I V
Sbjct: 394 EMGVDNSRIE-VAGMGDTQPITSNSTASGRAKNRRVEIEV 432


>gi|167838594|ref|ZP_02465453.1| hypothetical protein Bpse38_18947 [Burkholderia thailandensis
           MSMB43]
          Length = 391

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
            Y L   S +    +    R+   A      L  L+AD I  G +  +       S +  
Sbjct: 223 KYALSMRSADVQQRIAAIARMTPPAAPAELRLKALLADEIAAGTV--SVDEDARHSSVTF 280

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R   MF   ++        +++KI   +A     + + G+TD  P ++     N  LS +
Sbjct: 281 RGDAMFPPGAAGVNATMGPLVKKIAAEIAKVPGKVIVLGYTDNQPIKSRQFASNEALSEE 340

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           RA    Q+L  +GV   R+  + G           +    + NRR++I V
Sbjct: 341 RATQVMQMLQSAGVPASRLEAL-GKGDANPIGDNRTPQGRALNRRVEITV 389


>gi|110833095|ref|YP_691954.1| hypothetical protein ABO_0234 [Alcanivorax borkumensis SK2]
 gi|110646206|emb|CAL15682.1| Flagellar motor protein [Alcanivorax borkumensis SK2]
          Length = 213

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L   + L  ++ KRL +  +++   L   +AD +  G     T     I I     + +
Sbjct: 41  QLELSQSLEQEKAKRLAEEQRRM--ALEEALADPLASG---RVTFNNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFR---NIARDNWRLSL 289
           F  +S    PE   +L  + + L    +   +++ + G TDA P         DNW LS 
Sbjct: 93  FQLNSDRLQPEGKALLSDLVKPLQVFLSQHDDMLMVSGFTDALPINRGNGRYADNWGLSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
            RA +  + L++ G+  D++   + F  ++    +D     + NRR+++    RQ
Sbjct: 153 QRALTVTRTLIEQGMPADQVFAAA-FGDNQPVAPNDDADSRARNRRVELTTVPRQ 206


>gi|332519179|ref|ZP_08395646.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045027|gb|EGI81220.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 284

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD----NIVKGVLFETTR 221
           + N  E      L+K     + + K L+D            V D    N  + +      
Sbjct: 92  TSNLTERQMQETLAKVDPNKLSQAKTLKDSMNLAIQYNLNRVIDTSSLNEDEDITVSIDE 151

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
           T ++ISI D+    +F+  S     +   +LQK+ +V+       + + GHTD+      
Sbjct: 152 TVVMISISDKM---LFNTGSYRVSNKANDILQKLADVINSEPSIDVMVEGHTDSRTISTP 208

Query: 281 A-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             +DNW LS+ RA S  + L     VS +++   SG + ++   A+D     S NRR  I
Sbjct: 209 TLKDNWDLSVLRATSVVRKLQNEYSVSPEKLIA-SGRSSYQPLTANDTKDGRSKNRRTRI 267

Query: 337 LVED 340
           ++  
Sbjct: 268 ILLP 271


>gi|288801555|ref|ZP_06406997.1| OmpA family protein [Prevotella melaninogenica D18]
 gi|302345028|ref|YP_003813381.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
 gi|288335597|gb|EFC74030.1| OmpA family protein [Prevotella melaninogenica D18]
 gi|302149794|gb|ADK96056.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
          Length = 286

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           + + ++ +  Q  +     NN    S   Q    + S         +  ++ +       
Sbjct: 31  TENNQLTADYQNAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 90

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +    +   ++     ++ K +   L   +++ L+  ++   +K V  +  +  + IS+ 
Sbjct: 91  KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 150

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282
           D     ++   S          L KI +++       + I G+TD  P           R
Sbjct: 151 DNM---LYKSGSYEVNDRAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTTTDKMKNIR 207

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +NW LS  RA S  Q L    GV+  R++   G   +     +D       NRR  I++ 
Sbjct: 208 NNWDLSCLRAASVAQYLQDRFGVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIIT 266

Query: 340 DR 341
            +
Sbjct: 267 PK 268


>gi|330819528|ref|YP_004348390.1| type IV / VI secretion system protein, DotU family [Burkholderia
           gladioli BSR3]
 gi|327371523|gb|AEA62878.1| type IV / VI secretion system protein, DotU family [Burkholderia
           gladioli BSR3]
          Length = 469

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294
           +F    +   P  I +L+++   L      + + GHTD  P R++  +DN+ LS  RA +
Sbjct: 360 LFPSGGADIAPAEIPLLRQVAAALNQVKGRVIVVGHTDDQPIRSLKFKDNFALSTARAQN 419

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP----MNSANRRIDIL 337
              +L   G+ + R  + +G    +  IA+ P      + NRR++IL
Sbjct: 420 TLAIL-AQGLDDPRRLEANGAGSSQP-IATPPSLPENRARNRRVEIL 464


>gi|197124706|ref|YP_002136657.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196174555|gb|ACG75528.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 206

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267
             + K    + T  G+L+ +   +   +FD  SS   PE I  L+++G+VLA    + I 
Sbjct: 75  KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIR 131

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I G+TDA+  +++   N  LSL RA +  +VL+  GV E +I+ + G    R    +   
Sbjct: 132 IEGYTDATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGTA 187

Query: 327 -MNSANRRIDILVE 339
              + NRR+++ ++
Sbjct: 188 SGRAQNRRVELHID 201


>gi|300723438|ref|YP_003712743.1| hypothetical protein XNC1_2522 [Xenorhabdus nematophila ATCC 19061]
 gi|297629960|emb|CBJ90580.1| Conserved hypothetical protein with OmpA/MotB domains (probable
           component of SST VI cluster) [Xenorhabdus nematophila
           ATCC 19061]
          Length = 406

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L  L+ D I  G+L   T      SII  +   +F  S+         +++ I E L  
Sbjct: 259 KLQSLLKDEIEAGLLT-VTDMSDR-SIIVLKGDGLFKSSAIQIKSRYSAIIKHIAEALNS 316

Query: 262 STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               I + G+TD  P  +       N+ LSL RA S  + L +     +R+S   G    
Sbjct: 317 LQGNILVVGYTDNIPVSSRRSHFLSNYALSLARAKSVQRELQRYLNQPERVSA-EGKGAE 375

Query: 319 RLKIASDP--MNSANRRIDILVE 339
                +D     + NRR++I + 
Sbjct: 376 NPIAPNDTRSNRAKNRRVEITLL 398


>gi|317153382|ref|YP_004121430.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943633|gb|ADU62684.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 254

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 95/254 (37%), Gaps = 12/254 (4%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           ++ S++K    +   +  +      G       +  +   +        S    +     
Sbjct: 3   DKKSESKPQPELQAGVKPSQPKPDPGIPAWMATFADMVTLLLCFFVLLLSFTNTDITNFR 62

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
              G          +      N F     KE+  +++  + + ++  ++   +    A +
Sbjct: 63  LLMGSIQEALGVQYEDSGALSNPFADSSFKERQ-SVRENREIVEVGARLKDFIR---ARD 118

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
           +       + ++G+++      N+ MF + S+   P+    L+ +   + +    + I G
Sbjct: 119 LTSMARVSSDKSGVMLRF---NNSAMFQRGSAELSPQAKPALEVVIAGMENKNFNLVING 175

Query: 271 HTDA-SPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDP 326
           HTD+ +P  ++   NW LS  RA +    +L  S +S +R+  + G+A  +  +   S+ 
Sbjct: 176 HTDSETPESDLYTSNWELSAARAATCLRYILTHSDISANRMKAV-GYAGAKPIVPSTSEE 234

Query: 327 MNSANRRIDILVED 340
               NRR++     
Sbjct: 235 NRQINRRVEFFYMP 248


>gi|260576491|ref|ZP_05844481.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259021374|gb|EEW24680.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 464

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 16/192 (8%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +++  + N  L  ++ E+      +    +  +  +  L+   ++   +       R G+
Sbjct: 274 EALGSQLNSALAQVASEQRRRADLEAAEAERLRAEAQDLAKFRSEFFGELSKVLAGRQGV 333

Query: 225 LI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDA 274
            I        +  +F+  S+   PE    +  +   L             +I + GHTD 
Sbjct: 334 RIVGDRFVFSSEVLFNPGSADLAPEGRAQIAGVVATLNEIAAQIPPGIDWIIRVDGHTDN 393

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNS 329
            P        DNW LS  RA +  + +  + G S +R++  +GF  ++     D     +
Sbjct: 394 VPLSGQGEFADNWELSQARALAVVRYMQDNLGFSPERLAA-TGFGEYQPVAVGDAPETRA 452

Query: 330 ANRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 453 LNRRIELKLTER 464


>gi|256820420|ref|YP_003141699.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582003|gb|ACU93138.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 290

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 19/222 (8%)

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
                N     N+QQ  +   +LT  ++KG +     +LEKS+       L   +    +
Sbjct: 61  SMKNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAV 115

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +    L      +  +L G++ +   + V  +  +  + I+I D+    +F   S   
Sbjct: 116 TRRDSINLA-----LVQSLKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTI 167

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302
                 VL+K+ +V+ +  +    + GHTD    +    RDNW LS+ RA    +VL K 
Sbjct: 168 SKNAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKD 227

Query: 303 -GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
            GV+ +R++  +G +++    ++   N    NRR  I++  +
Sbjct: 228 FGVAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVILPK 268


>gi|116695082|ref|YP_840658.1| OmpA/MotB-family outer membrane protein [Ralstonia eutropha H16]
 gi|113529581|emb|CAJ95928.1| outer membrane protein, OmpA/MotB-family [Ralstonia eutropha H16]
          Length = 435

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 29/295 (9%)

Query: 48  FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107
           FL++  +  +  +    IE Y++          +G+ D            +D     +  
Sbjct: 164 FLILGRLVESVAENIGTIEVYYHILSLGFQGRYRGMADGDQQLHAIRGRLLDAISKHN-- 221

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLS-NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
              V  ++ S +Q     R  +        +  +     +      K + + +  D+ + 
Sbjct: 222 -GPVPKELSSHSQPAPPGRFHHLSGIPVWMTCTAGLLAVAGLAGYYKYQLMLQERDVVQQ 280

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           I    N   PP  K   LA       + L  +I+  +  +  DN    V+F         
Sbjct: 281 IGAIGNLTPPPAPKALRLA-------ELLKDEIARGVVAVRDDNHRSTVVFRGDD----- 328

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
                    MF    +    +    L K+   +      + + GH+D  P ++     N 
Sbjct: 329 ---------MFGAGRAEVNAKLTPTLNKVAGEINKLQGKVQVIGHSDNQPIKSARYPSNQ 379

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            LS +RA    + L   GV++ R+  I G           +    +ANRR++++V
Sbjct: 380 VLSEERAAMVSEYLASQGVAKRRLEAI-GKGDTEPLTDNKTPAARAANRRVEVVV 433


>gi|88800584|ref|ZP_01116145.1| chemotaxis MotB protein, putative [Reinekea sp. MED297]
 gi|88776639|gb|EAR07853.1| chemotaxis MotB protein, putative [Reinekea sp. MED297]
          Length = 355

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 13/266 (4%)

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
            D+    + S Q++      +  TKN    ++ +T    + +  E N      +Q     
Sbjct: 85  LDQLRSAQNSVQSQQSQLQAQLSTKNQEVEQLQATLTATEARLQEINTNLEVANQLIAEQ 144

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +L   +   +    +         E   +   + + +         +  L  ++ + L
Sbjct: 145 QGALDEAATTEERFLAARQQLALEQAENETYSETVERLRQEMAAETAAMNALEAQLQTQL 204

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           S L  +   + ++ +       I +     + +F    +    E    L  +   L+   
Sbjct: 205 SQLNQEK--EKLVTQLEDGTTAIKL---PESILFASGRADINAEGRQSLANLATALSSFP 259

Query: 264 EV-ISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
              ISI+GHTD+             NW LS  RA SA + L+K G+  D++  + G+A  
Sbjct: 260 NHLISIQGHTDSQTIAPATAEKYPTNWELSAARAASAVRELLKQGIPADQMQAV-GYADT 318

Query: 319 RLKI--ASDPMNSANRRIDILVEDRQ 342
           R  +   S      NRRI++++   Q
Sbjct: 319 RPLVEETSAQTRQQNRRIEVILLPNQ 344


>gi|311109539|ref|YP_003982392.1| type VI secretion system OmpA/MotB family protein [Achromobacter
           xylosoxidans A8]
 gi|310764228|gb|ADP19677.1| type VI secretion system OmpA/MotB family protein [Achromobacter
           xylosoxidans A8]
          Length = 425

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A +++  L+  + D +V  V  E  R     S++  R   +F+  +S    + + VL ++
Sbjct: 274 APRLAVFLAPEIRDQLVS-VRDEVDR-----SVVVLRGDGVFESGASSVRDQYLPVLSRV 327

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            + L  +   I +RG++D +P R+     NW LS  RA +   +L +      R+ +  G
Sbjct: 328 ADALRETQGSILVRGYSDNTPMRSARFPSNWHLSQARADAVKDMLEQRLGQTARV-RAEG 386

Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339
                    +D     + NRR++I V 
Sbjct: 387 RGDADPVAPNDTAAGRALNRRVEITVL 413


>gi|292489492|ref|YP_003532380.1| putative type VI secretion system core protein [Erwinia amylovora
           CFBP1430]
 gi|292898296|ref|YP_003537665.1| outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291198144|emb|CBJ45249.1| putative outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291554927|emb|CBA22885.1| putative type VI secretion system, core protein [Erwinia amylovora
           CFBP1430]
 gi|312173666|emb|CBX81920.1| putative type VI secretion system, core protein [Erwinia amylovora
           ATCC BAA-2158]
          Length = 413

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           ++  L          S++  +   +F  +S+        VL ++   +   +  I + G+
Sbjct: 268 IEQGLVAVRDEADR-SVVTLKGDGLFTSASTEVRGRYAEVLDRVAAAMNSVSGRILVVGY 326

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +D  P R+     N+ LSL RA S  + L +      R+    G         ++     
Sbjct: 327 SDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVKA-EGRGESNPLAPNNSAGNR 385

Query: 329 SANRRIDILVE 339
           + NRR++I + 
Sbjct: 386 ARNRRVEITLL 396


>gi|325860437|ref|ZP_08173549.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|325482095|gb|EGC85116.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
          Length = 286

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           + + ++ +  Q  +     NN    S   Q    + S         +  ++ +       
Sbjct: 31  TENNQLTADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 90

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +    +   ++     ++ K +   L   +++ L+  ++   +K V  +  +  + IS+ 
Sbjct: 91  KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 150

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282
           D     ++   S          L KI +++       + I G+TD  P           R
Sbjct: 151 DNM---LYKSGSYEVNERAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIR 207

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +NW LS  RA S  Q L    GV+  R++   G   +     +D       NRR  I++ 
Sbjct: 208 NNWDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQIIIT 266

Query: 340 DR 341
            +
Sbjct: 267 PK 268


>gi|86130772|ref|ZP_01049371.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818183|gb|EAQ39343.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 293

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 18/233 (7%)

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
           ++ E    Y +  Q+ +   N +    +   DL  S D +  I            K+   
Sbjct: 49  EKEEIKAKYAAIEQRVDDYNNKINALKDTNTDLQASNDSKFEITTNGTVMSENTKKKLRA 108

Query: 185 AMK-----RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RN 233
           A+         + Q L   ++  +S  +  N+ + V        I I I D        +
Sbjct: 109 ALANVDPSELAQAQTLEDSMNLAVSHKLKRNLDRDVYGNNASQDINIDIDDTVVQISISD 168

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRLSLD 290
             +F   S     E   +L++I  V+       + + GHTD+   +  +   DNW LS+ 
Sbjct: 169 KMLFRSGSYRVSKEADDLLKRIAAVVNSEPAVEVMVEGHTDSRTVKKGSYLKDNWDLSVQ 228

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           RA +  + L  +  V   ++   SG + +   + ++     S NRR  IL+  
Sbjct: 229 RATAIVRELQNNHNVDPAKLIA-SGRSSYVPLVENNSKENMSRNRRTRILILP 280


>gi|224373185|ref|YP_002607557.1| OmpA/MotB [Nautilia profundicola AmH]
 gi|223588582|gb|ACM92318.1| OmpA/MotB [Nautilia profundicola AmH]
          Length = 258

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 15/219 (6%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            ++  L           S     +  + +         +       +     +K   +++
Sbjct: 21  GDLMSLLLCFFVLLLSMSTMDAKKVKEAIGSLAGALSVLEGGTQTEVSRNRIQKATPIEK 80

Query: 189 KKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                    K+S  ++      A      ++ E    G  I +        F   S+   
Sbjct: 81  TDETAQTVNKLSQAVAEFRQFTAGGKGPAIVLEEGEEGFFIRLPADIT---FKPGSAQIT 137

Query: 246 PETIVV-LQKIGEVLAH-STEVISIR--GHTDASPF--RNIARDNWRLSLDRAYSAYQVL 299
            E  ++ L++I  ++     + I I+  G+TD  P    +   DNW LS  RA S  ++L
Sbjct: 138 DEDSLLFLKRIALIIKEYLPKNIEIQIKGYTDNQPPPPTSPYADNWELSAARALSVLKIL 197

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +K GV+  ++S  + +  +    A+      + NRR++I
Sbjct: 198 IKDGVNPKQLSAAA-YGEYHPIAANATPEGRAKNRRVEI 235


>gi|149372159|ref|ZP_01891429.1| putative flagellar motor protein MotB [unidentified eubacterium
           SCB49]
 gi|149354926|gb|EDM43488.1| putative flagellar motor protein MotB [unidentified eubacterium
           SCB49]
          Length = 287

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 21/256 (8%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           +   +   DL     +  NS   +  +   K +      N    SN Q  E  K+     
Sbjct: 28  QTKQKETEDLLNTATVKLNSCLTEKSAAIVKAEGLEDRLNDLKASNQQLIESSKDLTILT 87

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           S+   +L KS +  K  + +       LSK+  + +     +  L K++           
Sbjct: 88  SKGADNLEKSLESLKERDLKITRLQDALSKKDSVTLAL---VSSLKKEV---------GM 135

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
             + +     +  + IS+ D     +F   S         +L K+  V+    +    + 
Sbjct: 136 NDQDIQINVEKGVVFISLSD---KVLFKSGSYNLSTRANEILGKVATVINGKPDFEALVE 192

Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           GHTD  P+       DN  LS  RA +  + L+  G +  ++   +G       + +  +
Sbjct: 193 GHTDNVPYNGGGVLIDNLDLSAKRATAVVRQLISLGANPSQLIA-AGRGEFVPLVPNTSV 251

Query: 328 NSA--NRRIDILVEDR 341
            +   NRR  I +  +
Sbjct: 252 ENKTLNRRTKIYILPK 267


>gi|187922936|ref|YP_001894578.1| hypothetical protein Bphyt_0935 [Burkholderia phytofirmans PsJN]
 gi|187714130|gb|ACD15354.1| type IV / VI secretion system protein, DotU family [Burkholderia
           phytofirmans PsJN]
          Length = 414

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 4/140 (2%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  L+ + I  G +  +       S +  R   MF             ++ KI   +   
Sbjct: 277 LKELLKNEIAAGTV--SVDEDARHSSVTFRGDAMFPPGGVNVNASMGPLIAKIASEIGKV 334

Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF-AHHRL 320
              +++ GHTD  P R+     N  LS +RA    Q+L  SGV+  R+  I G  A+   
Sbjct: 335 PGKVTVTGHTDNLPIRSRQFASNDALSEERATQVMQMLQASGVAAARLEAIGGGEANPIG 394

Query: 321 KIASDPMNSANRRIDILVED 340
             A+    + NRR++I V  
Sbjct: 395 DNATAQGRAQNRRVEITVTP 414


>gi|254457990|ref|ZP_05071417.1| OmpA/MotB [Campylobacterales bacterium GD 1]
 gi|207085383|gb|EDZ62668.1| OmpA/MotB [Campylobacterales bacterium GD 1]
          Length = 219

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 18/206 (8%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             ++    ++   S     L   T  E S  + +       + E   A+ R  +    A 
Sbjct: 1   MDAKKISEAIGSLSGAMSVLEGGTKTEVSKQRMQQSTPIDSNDESSEAVNRVAQAVIDAN 60

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIG 256
           ++     G         +  E  + G +I +     + +F   S+     + ++ L+++ 
Sbjct: 61  EMMEKGHGPA-------ISVEEAQEGFVIEL---PASLLFKSGSATIENEDALLFLKRVA 110

Query: 257 EVLAHSTE--VISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++        +S++GHTD     N  + +DNW LS  RA S  Q L+   V   RIS  
Sbjct: 111 LIVEELPNSMQVSVQGHTDNQGPGNNSVFKDNWELSSARAISVLQELLLDSVDPKRISA- 169

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI 336
           SGFA ++    +  +     NRR+++
Sbjct: 170 SGFAEYKPLATNVTEAGREKNRRVEL 195


>gi|327312584|ref|YP_004328021.1| OmpA family protein [Prevotella denticola F0289]
 gi|326944583|gb|AEA20468.1| OmpA family protein [Prevotella denticola F0289]
          Length = 288

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           + + ++ +  Q  +     NN    S   Q    + S         +  ++ +       
Sbjct: 33  TENNQLTADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 92

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +    +   ++     ++ K +   L   +++ L+  ++   +K V  +  +  + IS+ 
Sbjct: 93  KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 152

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282
           D     ++   S          L KI +++       + I G+TD  P           R
Sbjct: 153 DNM---LYKSGSYEVNERAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIR 209

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +NW LS  RA S  Q L    GV+  R++   G   +     +D       NRR  I++ 
Sbjct: 210 NNWDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQIIIT 268

Query: 340 DR 341
            +
Sbjct: 269 PK 270


>gi|83949920|ref|ZP_00958653.1| flagellar motor protein [Roseovarius nubinhibens ISM]
 gi|83837819|gb|EAP77115.1| flagellar motor protein [Roseovarius nubinhibens ISM]
          Length = 627

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 16/242 (6%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
                +       +  R E  +                    +       S+   +++ K
Sbjct: 382 QAREALSEQEAMTEAARREQALLNQQVQALRTQLGELQALLDDAVDRESSSSVQLQTLGK 441

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-- 227
           + N  L  L+ E+    + ++    L +     L    ++   +       + G+ I   
Sbjct: 442 DLNVALARLAAEEKRRRELQEEKAKLLEAQKQDLEKYRSEFFGRLRDVLGAQDGVRIEGD 501

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRN 279
                +  +F    +    E    + K+ E+L             VI + GHTD  P  N
Sbjct: 502 RFVFSSEVLFAPGRAALSTEGRGEVAKVAEILRKVAGDIPPELDWVIRVDGHTDDVPIVN 561

Query: 280 IAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
            A   DNW LS  RA S  + +++S G+  DR+S  +GF  ++     D   +   NRRI
Sbjct: 562 SAEFADNWELSQARALSVVRYMIESLGIPPDRLSA-NGFGQYQPVAQGDSAEARAQNRRI 620

Query: 335 DI 336
           ++
Sbjct: 621 EL 622


>gi|313112366|ref|ZP_07798128.1| hypothetical protein PA39016_004320000 [Pseudomonas aeruginosa
           39016]
 gi|310884630|gb|EFQ43224.1| hypothetical protein PA39016_004320000 [Pseudomonas aeruginosa
           39016]
          Length = 372

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +AD+I    +       +  S++  R   +F  +S+    E   +L +I + L  
Sbjct: 230 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 287

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW+LS  RA     +L  +     R +   G +    
Sbjct: 288 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 346

Query: 321 K--IASDPMNSANRRIDILV 338
               AS    + NRR++I V
Sbjct: 347 VATNASAEGRARNRRVEITV 366


>gi|149193957|ref|ZP_01871055.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
 gi|149135910|gb|EDM24388.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
          Length = 256

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G      + LE     E +      +   +   +  + +  L + I+     +       
Sbjct: 51  GSLQGALSVLEGGTQTEVSRERIQKATPIVKNEETAQTVNRLQQAITE-FKEMTQAGKGN 109

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAH-STE--VISIR 269
            +  +    G  I +        F   S+     ++++ L++I  ++     +   I IR
Sbjct: 110 AITLQEGEEGFFIRLPADIT---FAPGSAEITNQDSLLFLKRIAIIIKEYLPKNIDIQIR 166

Query: 270 GHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325
           G+TD  P    +  RDNW LS  RA S  ++L+K GV   ++S  + +  +    ++   
Sbjct: 167 GYTDNLPPPKNSPYRDNWDLSAARALSVLKILIKDGVDPKQLSAAA-YGEYHPIASNLTP 225

Query: 326 PMNSANRRIDI 336
                NRR++I
Sbjct: 226 EGRDKNRRVEI 236


>gi|78485864|ref|YP_391789.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364150|gb|ABB42115.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 248

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 16/210 (7%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ E    SLT     G  + +         ++ N    P+  +      R ++L+ L
Sbjct: 36  DAKKYEGIVESLTNTLGHGAGMSQVQLEYFKKTEQIN----PIPMQSSKIEARPEKLKPL 91

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            + I+ T      ++ ++ V  +  R  + +S         F    +   P   V L+K+
Sbjct: 92  YESIAKTYEKSQQESNIE-VTIDEERQQVKVSF---PERISFPTGEADLKPGFSVQLRKL 147

Query: 256 GEVLAHSTEVISIR--GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
             ++      I ++  GHTD  P  +   R NW LS  RA +  Q L+   +     +++
Sbjct: 148 KNLI---DNTILVKAIGHTDKRPISSDRFRSNWELSSARAAAVIQQLIDDKIITPDQAEV 204

Query: 313 SGFAHHRLKI--ASDPMNSANRRIDILVED 340
            G A         +D   + NRR+++++  
Sbjct: 205 IGVADTHPVDEQENDAAYALNRRVEVVLIP 234



 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 64/189 (33%), Gaps = 7/189 (3%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
            +W   +AD M++LMA F++++ ++  D    + I +       +    S+   +     
Sbjct: 9   PTWLATFADLMSLLMAVFVLLFAMSTLDAKKYEGIVESLTNTLGHGAGMSQVQLEYFKKT 68

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           E+ +   +  S  E   +    L        ++ Q+  N    +   +Q           
Sbjct: 69  EQINPIPMQSSKIEARPEKLKPLYESIAKTYEKSQQESNIEVTIDEERQQVKVSFPERIS 128

Query: 151 SEKGKDLCKSTDLEKS-------INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
              G+   K     +         N      +    K  I + + +   +  + + ++ +
Sbjct: 129 FPTGEADLKPGFSVQLRKLKNLIDNTILVKAIGHTDKRPISSDRFRSNWELSSARAAAVI 188

Query: 204 SGLVADNIV 212
             L+ D I+
Sbjct: 189 QQLIDDKII 197


>gi|325269589|ref|ZP_08136204.1| OmpA family protein [Prevotella multiformis DSM 16608]
 gi|324988067|gb|EGC20035.1| OmpA family protein [Prevotella multiformis DSM 16608]
          Length = 289

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 14/240 (5%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
           + ++ +  Q  +     NN    S   Q    + S         +  ++ +       + 
Sbjct: 36  NNQLSADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINISKL 95

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
              +   ++     ++ K +   L   +++ L+  ++   +K V  +  +  + IS+ D 
Sbjct: 96  VDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLADN 155

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------RDN 284
               ++   S          L KI +++       + I G+TD  P           R+N
Sbjct: 156 M---LYKSGSYEVNDRAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIRNN 212

Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           W LS  RA S  Q L    GV+  R++   G   +     +D       NRR  I++  +
Sbjct: 213 WDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIITPK 271


>gi|220919426|ref|YP_002494730.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957280|gb|ACL67664.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 206

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267
             + K    + T  G+L+ +   +   +FD  SS   PE I  L+++G+VLA    + I 
Sbjct: 75  KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIR 131

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325
           I G+TDA+  +++   N  LSL RA +  +VL+  GV E +I+ + G    R    +   
Sbjct: 132 IEGYTDATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGTS 187

Query: 326 PMNSANRRIDILVE 339
              + NRR+++ ++
Sbjct: 188 AGRAQNRRVELHID 201


>gi|119384145|ref|YP_915201.1| hypothetical protein Pden_1404 [Paracoccus denitrificans PD1222]
 gi|119373912|gb|ABL69505.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 463

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
            ++          R          +Q +    +        G++  ++    + + ++ N
Sbjct: 221 QQLSEQEALSVEDRRRLAALNQQVAQLNSQLGSLRAVLDAAGEERREADLRAEDLGRQLN 280

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIID 230
             L   ++E+      ++  +  A+  +  L+   ++   +       R G+ +      
Sbjct: 281 VALLRAAEEERKRRALEEEARSKAEAEAKDLARYRSEFFGRLSQILAGREGVRVVGDRFV 340

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRN--I 280
             +  +F    +   PE    + ++ ++L   +  I         + GHTD  P      
Sbjct: 341 FSSEVLFAPGEATLSPEGRTQVARVADMLKQISGDIPPEIDWMIRVDGHTDNLPLSGQGR 400

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            RDNW LS  RA +  + ++   G    R+   +GFA  R     D     + NRRI++ 
Sbjct: 401 YRDNWELSQARALAVVRYMVDDLGFPATRL-APAGFADTRPVAQGDAPEARAQNRRIELK 459

Query: 338 VEDR 341
           + +R
Sbjct: 460 LTER 463


>gi|183219622|ref|YP_001837618.1| flagellar motor protein MotB [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909761|ref|YP_001961316.1| flagellar motor protein MotB [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774437|gb|ABZ92738.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778044|gb|ABZ96342.1| Chemotaxis MotB protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 277

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 32/180 (17%)

Query: 192 LQDLAKKISSTLSGLVADNIVKG----------------VLFETTRTGILISIIDQRNTP 235
           L+++  +I S  S +V  N+ K                 V       G++IS++      
Sbjct: 72  LEEMGMQIESLPSQVVGRNLSKSKKDAQEVFKPEVEAGKVRISENERGLVISLV---GAD 128

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA---SPFRNIAR------DNWR 286
            F   S+I  P     L+K   ++      + + GH+D    +P     R      +NW 
Sbjct: 129 YFYPGSAILTPAIRETLRKAAGLIKGLERFVRVEGHSDDDAVNPVSRPGREEREYINNWD 188

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA----NRRIDILVEDRQ 342
           L+  RA +A   ++ +   E    +   F  +R  +  +         NRR+DI++   +
Sbjct: 189 LAGARAVNATVFMINAEEIEPSWFQAVSFGSYRPLVLENEGTPEAKAFNRRVDIIILTEK 248



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78
           KK    +    +  +   Y D +T+L+ FF++++    TD    + I   F         
Sbjct: 4   KKEKCPECIQKVPEFMATYGDMVTLLLCFFILLYTTGKTDAKEMQIILSAFK-------- 55

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
           ++ G F       + S  ++ + I+   ++        S    ++  + E     +  S+
Sbjct: 56  STTGFFTGGQTLSKGSLEEMGMQIESLPSQVVGRNLSKSKKDAQEVFKPEVEAGKVRISE 115

Query: 139 QSEHCKNSL 147
                  SL
Sbjct: 116 NERGLVISL 124


>gi|238023638|ref|YP_002907870.1| hypothetical protein bglu_2g01470 [Burkholderia glumae BGR1]
 gi|237878303|gb|ACR30635.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 438

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LS L+ D I +G L  T       S +  R   MF    S   PE   VL K+   +A 
Sbjct: 300 RLSVLLKDEIARGEL--TVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVAR 357

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + G+TD+ P       DN  LS  RA     VL   G   +RI  I G    + 
Sbjct: 358 VGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSI-GKGDAQP 416

Query: 321 KIASDP--MNSANRRIDILV 338
              +      S NRR+++LV
Sbjct: 417 VADNATPQGRSRNRRVEVLV 436


>gi|159185884|ref|NP_356875.2| hypothetical protein Atu3746 [Agrobacterium tumefaciens str. C58]
 gi|159141018|gb|AAK89660.2| flagellar motor protein [Agrobacterium tumefaciens str. C58]
          Length = 261

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 19/248 (7%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           ++ +D   G+                      S         + +      +   +E ++
Sbjct: 19  QSLLDAGSGNNASANARIGSLTGELDEQRQANSRASAQIELLNQQIAALRAQIASVEAAL 78

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI- 226
              E        K   L  +    L    ++++       +D   +     + R  I I 
Sbjct: 79  QASEAKDTSSQVKIADLGRRLNVALAQRVQELNR----YRSDFFGRLREILSDRENIRIV 134

Query: 227 -SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPF 277
                 ++  +F    +   PE    + K+   L        A    V+ + GHTD    
Sbjct: 135 GDRFVFQSEVLFPSGGNDLNPEGQAEMAKLATALLDLAKEIPAEINWVLRVDGHTDNVQL 194

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                 RDNW LS  RA S  + L+  GV  +R+   +GF  ++     D   +   NRR
Sbjct: 195 TGSGRYRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQPIAEGDSPEARQQNRR 253

Query: 334 IDILVEDR 341
           I++ + +R
Sbjct: 254 IELKLTER 261


>gi|86133789|ref|ZP_01052371.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85820652|gb|EAQ41799.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 279

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 14/243 (5%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           +N      G+  + +  Q   +    +   + +    ++   + E       ++D     
Sbjct: 28  ENKYTDAKGNLQKLQLKQEEIDRRVEMYYDKINSLKDDNANLEEENALKFDVNSDNIVIS 87

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQD-----LAKKISSTLSGLVADNIVKGVLFETTRT 222
           +K        L+K     +   K L+D     L+  I +   G         +  +   T
Sbjct: 88  DKGRAIMDATLAKVDPKKLAEAKTLKDSLNLALSYNIITQTLGEAELLNSDELDIDIDET 147

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
            ++IS+ D     +F+  S       + ++ KI ++        I I GHTD+    N  
Sbjct: 148 VVMISVSD---KLLFNTGSYRVKESALSLITKIADIAESEPSIDIMIEGHTDSQSISNAT 204

Query: 282 -RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +DNW LS+ RA S  ++L  K  +   R+   SG       + +      + NRR  I+
Sbjct: 205 VQDNWDLSVKRATSIVRLLQNKFKIDGSRLIA-SGRGDTVPLLPNTSSENRAKNRRTRIV 263

Query: 338 VED 340
           +  
Sbjct: 264 ILP 266


>gi|255534563|ref|YP_003094934.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340759|gb|ACU06872.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium
           3519-10]
          Length = 300

 Score = 96.5 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 21/221 (9%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            ENN+    N          L+   +   ++ K      S NK     +   +K   L +
Sbjct: 80  SENNLLKSQNDALKSSLDACLSNTGKGSANIDKLIGEINSSNKYIQQLISTNAKNDSLNL 139

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                   L+ K+  +L  +  D+    V  +  +  ++IS+ D+    ++       +P
Sbjct: 140 A-------LSNKLKRSLDNIADDD----VQVKVLKGVVMISLSDKM---LYKTGDYNVMP 185

Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KS 302
               VL K+ +V+       + I G+TD  P  +    +DNW LS  RA S  ++L  K 
Sbjct: 186 AAQEVLGKVAQVINDYDTYSVLIEGNTDNVPLSSANLPKDNWDLSALRATSMAKILQTKF 245

Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           GV+  RI+   G + +  K  +      + NRR +I++  +
Sbjct: 246 GVNPARITA-GGRSEYNPKTTNASVSGRAENRRTEIIIMPK 285


>gi|254515071|ref|ZP_05127132.1| flagellar motor protein [gamma proteobacterium NOR5-3]
 gi|219677314|gb|EED33679.1| flagellar motor protein [gamma proteobacterium NOR5-3]
          Length = 216

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 225 LISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASP 276
            I+I D R     + +F  +S     E   +L  +   L      + +++ I G TD  P
Sbjct: 77  RITINDGRIGISGSVLFALNSDRLQEEGRELLVTLAAPLEVFLQENDQLLMISGFTDDLP 136

Query: 277 FRNI---ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331
            ++      DNW LS  RA +  + L+ +G+  DR+   + F   +    +  +   + N
Sbjct: 137 IQSGNLNFADNWELSAQRALTVTRELVAAGLPADRVFAAA-FGDQQPVAPNLDESGRALN 195

Query: 332 RRID 335
           RR++
Sbjct: 196 RRVE 199


>gi|123442902|ref|YP_001006877.1| putative OmpA family protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089863|emb|CAL12719.1| putative OmpA family protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 458

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L+ L+ D I K ++  + T +   +     +   MF   S     E + V++++ + + 
Sbjct: 320 RLAILLKDEIAKQLVSVDETSSRSKVIF---KGDTMFQVGSDKVRSEIMSVIERVAQEVH 376

Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                + I GHTD+ P  +    +N  LS  RA +  + + K+G+  D+I +  G    +
Sbjct: 377 RVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFMEKAGIPTDKI-QFEGKGDTQ 435

Query: 320 LKIASD--PMNSANRRIDILV 338
              ++D     S NRR++I V
Sbjct: 436 PVSSNDDAAGRSQNRRVEIFV 456


>gi|220905442|ref|YP_002480754.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869741|gb|ACL50076.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 235

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +A+KI   L          G+  +     + +      +  MF   +   LPE   VL  
Sbjct: 84  IAQKIKQLLMADSVPQSASGISADDVGVQLRV-----NSDIMFKPGTVELLPEGDKVLSS 138

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  ++      + +RGH D+          W LS  RA +    L + G+   R+  +S 
Sbjct: 139 VLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMVNYLAQRGIKATRMRAVS- 197

Query: 315 FAHHRLKIA--SDPMNSANRRID 335
           +   R       +   + NRR++
Sbjct: 198 YGDTRPLKPGIDEQSRAMNRRVE 220



 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 81/214 (37%), Gaps = 7/214 (3%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
            G+WK+ YADF+T +MAFFL++W+++    +T+  +  YF+       +++  + +    
Sbjct: 2   GGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPFI 61

Query: 90  PERSSQNKIDLSIDE-HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
                 +  D+ I E   +  ++  KI          +  + I       Q     + + 
Sbjct: 62  QNTDKIDTRDIKISEVEKSHYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIMF 121

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSK---EKILAMKRKKRLQDLAKKISSTLSG 205
           +             L   ++  E Y L  + +   + + A        +L+   ++ +  
Sbjct: 122 KPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMVN 181

Query: 206 LVADNIVKGVLFETTRTGILISI---IDQRNTPM 236
            +A   +K         G    +   ID+++  M
Sbjct: 182 YLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAM 215


>gi|312963881|ref|ZP_07778352.1| hypothetical protein PFWH6_5800 [Pseudomonas fluorescens WH6]
 gi|311281916|gb|EFQ60526.1| hypothetical protein PFWH6_5800 [Pseudomonas fluorescens WH6]
          Length = 429

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+G +A+ I  G +       +  S++  R   +F  +S+  + +   ++ +I + +  
Sbjct: 287 RLAGFLAEEIKAGRV--AVEDKVDRSVVTIRGDELFASASASIVDDYQPLMLRIADAIRK 344

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW LS  RA S  ++L       DR S   G +    
Sbjct: 345 VKGQVRVTGHSDNRPIATLRFPSNWALSEARAKSVLEILAAKTGQADRFSA-EGRSDTEP 403

Query: 321 KIASDP--MNSANRRIDILVE 339
              +      + NRR++I V 
Sbjct: 404 LATNSTAEGRARNRRVEITVL 424


>gi|253991260|ref|YP_003042616.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638308|emb|CAR66931.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782710|emb|CAQ85875.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica]
          Length = 387

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           V   +++      ++    +S+   +   +F  +S+   P     LQ++ + L  +T  +
Sbjct: 246 VLQPMIEQQDITVSQNADNVSVT-LQGGGLFASASATLNPLYQTPLQELAKQLNLTTGKV 304

Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            +RGH+D  P        N+ LSL RA +  Q L  + +   R+ ++         + + 
Sbjct: 305 IVRGHSDNLPIHTHTYSSNYALSLARAETVAQQLRTNLLQPQRL-QVESAGAEAPLVPNT 363

Query: 326 P--MNSANRRIDIL 337
                + NRRI+I+
Sbjct: 364 TAKNRALNRRIEII 377


>gi|330828822|ref|YP_004391774.1| OmpA family protein [Aeromonas veronii B565]
 gi|328803958|gb|AEB49157.1| OmpA family protein [Aeromonas veronii B565]
          Length = 306

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 13/211 (6%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL---AMKRKK 190
              SQ     ++      E   +      +  S +  E+   P  S   I     ++   
Sbjct: 52  DGMSQAFSVMQSGGNGLLEGQGNSLLDNAVSASPSLLESPASPSPSLAPISGVPVLQDGA 111

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L  L  ++  ++  LV   IVK          + + +    +  +F   S+   P    
Sbjct: 112 TLAKLDMQLQQSMGSLVDAGIVK---LTQDENWLTVELS---SGLLFGSGSAFLGPNAAP 165

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           V+  +  +L      + +RG+TD     N I R NW LS  RA +    L+  G++  R+
Sbjct: 166 VINTLSSILKPVDNYVRVRGYTDNQQINNEIYRSNWALSAARAEAVLNGLIADGIAPQRL 225

Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILV 338
                +        +  +     NR++ + +
Sbjct: 226 -AFEAYGEFSPFADNGSEQGRLQNRKVVVAI 255



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 1/138 (0%)

Query: 17  IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++K+  +      +L  W + YAD+MT++ A F+V++ +   + D  +A+    +     
Sbjct: 1   MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMSQAFSV 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           + +   G+ + Q      +      S+ E     S  L   S     Q       +    
Sbjct: 61  MQSGGNGLLEGQGNSLLDNAVSASPSLLESPASPSPSLAPISGVPVLQDGATLAKLDMQL 120

Query: 136 NSQQSEHCKNSLTRDSEK 153
                      + + ++ 
Sbjct: 121 QQSMGSLVDAGIVKLTQD 138


>gi|218888823|ref|YP_002437687.1| hypothetical protein PLES_00791 [Pseudomonas aeruginosa LESB58]
 gi|218769046|emb|CAW24806.1| hypothetical protein PLES_00791 [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +AD+I    +       +  S++  R   +F  +S+    E   +L +I + L  
Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW+LS  RA     +L  +     R +   G +    
Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423

Query: 321 K--IASDPMNSANRRIDILV 338
               A+    + NRR++I V
Sbjct: 424 VASNANAEGRARNRRVEITV 443


>gi|254255076|ref|ZP_04948393.1| Flagellar motor protein [Burkholderia dolosa AUO158]
 gi|124899721|gb|EAY71564.1| Flagellar motor protein [Burkholderia dolosa AUO158]
          Length = 352

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           S     + G  +   T    S+++         S    +       L  LA +     + 
Sbjct: 125 SEQAMYDGGAGMFDGTGSAPSLDEPIGPRAIDPSTG-AVTWDADDGLAQLAARFDRLGAD 183

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
               + ++ V+   T  G+ + + D  +  +F++ S++P P    +L K+G + A +   
Sbjct: 184 AGLQDNLRSVM---TPFGLRLMLHDSESQGVFERGSAVPAPPFRPLLDKMGALFAQTDSP 240

Query: 266 ISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLM 300
           + + GHTD+ P+R      R NW LS DRA SA + L+
Sbjct: 241 LLVIGHTDSVPYRKYGLGGRSNWHLSADRAMSARRALV 278



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           I+K+        ++ G+WK+ +ADF   LM  FL++W++ A D++  +   +      + 
Sbjct: 71  IVKRAPRRAHDHDHGGNWKVAFADFCLALMCLFLLLWVLAARDEEETRI--KLIEMSEQA 128

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +     G+FD         +     +ID      + D   G      ++ RL  +     
Sbjct: 129 MYDGGAGMFDGTGSAPSLDEPIGPRAIDPSTGAVTWDADDGLAQLAARFDRLGADAGLQD 188

Query: 136 N 136
           N
Sbjct: 189 N 189


>gi|254428132|ref|ZP_05041839.1| OmpA family protein [Alcanivorax sp. DG881]
 gi|196194301|gb|EDX89260.1| OmpA family protein [Alcanivorax sp. DG881]
          Length = 212

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L   + L  ++ KRL +  +++   L   +AD +  G     T     I I     + +
Sbjct: 40  QLELSQSLEQEKAKRLAEEQRRM--ALEEALADPLASG---RVTFHNGRIGIS---GSVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFR---NIARDNWRLSL 289
           F  +S    PE   +L  + + L    +   +++ + G TD  P         DNW LS 
Sbjct: 92  FQLNSDQLQPEGEALLSDLVKPLQVFLSQHDDMLMVSGFTDDLPINRGNGRYADNWGLSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
            RA +  + L++ G+  D++   + F  ++    +D     + NRR+++    RQ
Sbjct: 152 QRALTVTRTLIEQGMPADQVFAAA-FGDNQPVAPNDDADSRARNRRVELTTVPRQ 205


>gi|84501383|ref|ZP_00999588.1| hypothetical protein OB2597_13498 [Oceanicola batsensis HTCC2597]
 gi|84390674|gb|EAQ03162.1| hypothetical protein OB2597_13498 [Oceanicola batsensis HTCC2597]
          Length = 467

 Score = 96.1 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +   K++  L   +   +V+     +T   I I I     + MF   S    PE    L+
Sbjct: 321 EQVTKVAGFLEAEIDQGLVEVFQDNST---ITIRI---AGSNMFGSGSDRLQPEFDQPLE 374

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           ++ + L  +   + + GH+D  P R+     N  LSL RA S  Q L        R+   
Sbjct: 375 RVAQALTETEGPVIVVGHSDNVPIRSSRFPSNMHLSLARAESVMQKLAGLIEDPTRLQS- 433

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340
            G A       +D     + NRRI+I++  
Sbjct: 434 EGRAAKEPIDTNDTREGRARNRRIEIVLVR 463


>gi|299145942|ref|ZP_07039010.1| OmpA family protein [Bacteroides sp. 3_1_23]
 gi|298516433|gb|EFI40314.1| OmpA family protein [Bacteroides sp. 3_1_23]
          Length = 297

 Score = 96.1 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN-SQQSE 141
           +  +Q    ++   K+     E   +   +    ++ +++  +   NN     + S    
Sbjct: 21  VSQKQFKGLKTDYTKLQTEYQESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQS 80

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
               SLT+ S+   ++ K  D   + N+   + +           K K R   L   + +
Sbjct: 81  ILNKSLTQSSQGNMNMGKLIDEINASNRFIQHLV-----------KEKNRSDSLNLVMVN 129

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +    ++ +  +  +  + IS+ D     ++   S     +   VL KI +++  
Sbjct: 130 KLTRSLTREEMRDLDIKVLKGVVYISLADNM---LYKSGSYEISNKAEAVLSKIAKIIQD 186

Query: 262 S-TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318
                + + G+TD  P  R   R+NW LS  RA S  Q L    G++  R++  +G    
Sbjct: 187 YKDYDVLVEGNTDTDPISRTNIRNNWDLSALRASSVVQALQNVYGINPKRLTA-AGRGEF 245

Query: 319 RLKIASDPMN--SANRRIDILVEDR 341
                +D     + NRR +I++  +
Sbjct: 246 NPVAGNDTAEGKARNRRTEIIITPK 270


>gi|186471751|ref|YP_001863069.1| DotU family type IV/VI secretion system protein [Burkholderia
           phymatum STM815]
 gi|184198060|gb|ACC76023.1| type IV / VI secretion system protein, DotU family [Burkholderia
           phymatum STM815]
          Length = 429

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 185 AMKRKKRLQDLAKKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           A   +K++ D+A+           L  L+ D I  G +  +       S +  R   MF 
Sbjct: 268 ADDIQKQIGDIARMTPPPAPPVLHLKTLLKDEIAAGTV--SVDEDAKHSAVTFRGDSMFP 325

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297
                       ++ KI   +      +++ G+TD  P  +     N  LS +RA    Q
Sbjct: 326 PGGVAVNTSMGPLIAKIAAEIVKVPGKVTVLGYTDNLPIHSHAFASNDALSAERATQVLQ 385

Query: 298 VLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           +L   GV   R+  +  G A      ++    + NRR++I V
Sbjct: 386 MLQADGVPASRLEAMGKGEADPVADNSTPQGRAQNRRVEIHV 427


>gi|325953930|ref|YP_004237590.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323436548|gb|ADX67012.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 284

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   ++ +  +  +  + IS+ D     ++   S    P     L KI ++
Sbjct: 126 LTNNLTRSLSREEMRDIDVQVLKGVVYISLADNM---LYKSGSYEISPAAGETLSKIAKI 182

Query: 259 LAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS  RA S  Q L  + GV   R++   G 
Sbjct: 183 IKDYRDYDVLIEGNTDNVPINRPNIRNNWDLSALRASSVVQALQNQYGVDPKRLTA-GGR 241

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341
             +      A++   S NRR  I++  +
Sbjct: 242 GEYNPVTTNATEEGKSKNRRTQIIITPK 269


>gi|220913721|ref|YP_002489030.1| OmpA/MotB domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860599|gb|ACL40941.1| OmpA/MotB domain protein [Arthrobacter chlorophenolicus A6]
          Length = 266

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 9/210 (4%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +  + +  +NSL             T     +  ++            LA+K   +L  L
Sbjct: 45  DQAKFDKLRNSLATGFGAVASQTADTASGTVVPPDQVNKDAEAFSSLDLAIKEVDKLTAL 104

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +++ + L    A  +   V F+ +  G+ + ++  +    F             VL  I
Sbjct: 105 QQQMETALK---AQQLDSNVEFQISERGLTVKLVGSQ--AFFLPDRPELTRRASQVLDTI 159

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKIS- 313
              LA +   I + GH  A+         W LS  R+ +  + L+ + GV+  RI  ++ 
Sbjct: 160 SPTLAPAGLEIMVEGH--AANGITAFPSTWELSSARSVNVLRYLVDRGGVAPGRIGAVAF 217

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G A      +++ +   NRR+D++V   + 
Sbjct: 218 GSARQVNDDSTEELMELNRRVDVVVLSDKA 247



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 3/116 (2%)

Query: 17  IKKKVAIDDTP---NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
           +K++      P   +    W   Y D +TVLM  F+V++ ++  D      +        
Sbjct: 1   MKRRRRGGHEPEEEHVDERWMASYMDMVTVLMCMFIVLFAMSTVDQAKFDKLRNSLATGF 60

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
             + + +         P        +      +    VD       Q +   + + 
Sbjct: 61  GAVASQTADTASGTVVPPDQVNKDAEAFSSLDLAIKEVDKLTALQQQMETALKAQQ 116


>gi|319955585|ref|YP_004166852.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319424245|gb|ADV51354.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 275

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVL 216
               D+    NK +      LSK     +   K ++D +   IS  L   +AD+    V 
Sbjct: 78  SSVDDITVMSNKTKEKMKATLSKVDPALLANAKTMEDSINLAISYNLKKSIADD-EDDVN 136

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
               +T ++I+I D     +F+  S     +   +L+KI +V+       + + GHTD+ 
Sbjct: 137 INIDKTVVMINISD---KLLFNSGSYTVSNKANNILKKIADVINSEPSMEVMVEGHTDSR 193

Query: 276 PFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSAN 331
             +    +DNW LS+ RA S  ++L K   V+ +++   SG +     + +D     S N
Sbjct: 194 TIQTPMFQDNWDLSVKRATSVVRILQKKYNVAPEKLIA-SGRSSFLPLVENDSKENRSKN 252

Query: 332 RRIDILVED 340
           RR  I++  
Sbjct: 253 RRTRIVIIP 261


>gi|218778866|ref|YP_002430184.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760250|gb|ACL02716.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 281

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 27/159 (16%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           ++      V   +T  G LISI DQ    +F+  +S   P     L ++ E++      +
Sbjct: 98  LSAESSNQVDIRSTGNGSLISIRDQ---LLFEDGASSIKPSAKAFLTRLAEIINADNFPV 154

Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL--------------MKSGVSE----- 306
            I GHTD  P      + NW LS  RA + Y+                   GV+      
Sbjct: 155 VITGHTDDRPPEEKGVQSNWELSARRAMAVYRFFYDQYLEQLAAREREANGGVAPVNLPN 214

Query: 307 --DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              +   + G    +   ++D     + N R++IL++ R
Sbjct: 215 KYPKRIDVYGCGPSQPVASNDTPQTRALNNRVEILMDKR 253


>gi|260174718|ref|ZP_05761130.1| OmpA/MotB domain protein [Bacteroides sp. D2]
 gi|315922978|ref|ZP_07919218.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696853|gb|EFS33688.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 297

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN-SQQSE 141
           +  +Q    ++   K+     E   +   +    ++ +++  +   NN     + S    
Sbjct: 21  VSQKQFKGLKTDYTKLQTEYQESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQS 80

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
               SLT+ S+   ++ K  D   + N+   + +           K K R   L   + +
Sbjct: 81  ILNKSLTQSSQGNMNMGKLIDEINASNRFIQHLV-----------KEKNRSDSLNLVMVN 129

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +    ++ +  +  +  + IS+ D     ++   S     +   VL KI +++  
Sbjct: 130 KLTRSLTREEMRDLDIKVLKGVVYISLADNM---LYKSGSYEISNKAEAVLSKIAKIIQD 186

Query: 262 S-TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318
                + + G+TD  P  R   R+NW LS  RA S  Q L    G++  R++  +G    
Sbjct: 187 YKDYDVLVEGNTDTDPISRTNIRNNWDLSALRASSVVQALQNIYGINPKRLTA-AGRGEF 245

Query: 319 RLKIASDPMN--SANRRIDILVEDR 341
                +D     + NRR +I++  +
Sbjct: 246 NPVAGNDTAEGKARNRRTEIIITPK 270


>gi|163788219|ref|ZP_02182665.1| putative flagellar motor protein MotB [Flavobacteriales bacterium
           ALC-1]
 gi|159876539|gb|EDP70597.1| putative flagellar motor protein MotB [Flavobacteriales bacterium
           ALC-1]
          Length = 285

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 14/211 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           E  K  L    +    L KS+     +  +    L    +    +  +  RLQD   +  
Sbjct: 60  EAMKEQLADMRKSNDALIKSSQDLTELTSQGATNLEKSLESLRESNLKITRLQDALTRKD 119

Query: 201 STLSGLVADNIVK------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           S    +V     +       +     +  + ISI D     +F   S         +L K
Sbjct: 120 SVTLAIVTSLKKEVGINDSDIEINVEKGVVFISIAD---KLLFKSGSYNVTDRANEILGK 176

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           + +V+    +    +  HTD   +      DNW LS+ RA +  +VL    V+  ++   
Sbjct: 177 VAKVINSKPDFEAMVESHTDNKSYSKPPLLDNWDLSVKRATAIVRVLESLNVNPQQLIA- 235

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +G + +   + +D     + NRR  I+V  +
Sbjct: 236 AGRSSYVPLVENDTAENRAKNRRTRIVVLPK 266


>gi|293369806|ref|ZP_06616382.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292635228|gb|EFF53744.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
          Length = 297

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q+ Q Q  EN     S  ++    + + +   +   D+    +   + + + N  +  L 
Sbjct: 41  QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 100

Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
            E   +       +K K R   L   + + L+  +    ++ +  +  +  + IS+ D  
Sbjct: 101 DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 160

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290
              ++   S     +   VL KI +++       + + G+TD  P  R   R+NW LS  
Sbjct: 161 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 217

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           RA S  Q L    G++  R++  +G         +D     + NRR +I++  +
Sbjct: 218 RASSVVQALQNVYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 270


>gi|303236640|ref|ZP_07323221.1| OmpA family protein [Prevotella disiens FB035-09AN]
 gi|302483144|gb|EFL46158.1| OmpA family protein [Prevotella disiens FB035-09AN]
          Length = 286

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
            S + ++ S  Q  +     NN    S   Q    K S             +T+      
Sbjct: 30  QSDNRRLNSEYQNAKETIAANNARIKSLEDQLAQAKASAQALQGSLDKSLSNTNSTNINI 89

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
            +    +   ++     ++ K +   L   +S+ L+  ++   +K V  +  +  + IS+
Sbjct: 90  SKLVDQINESNQYIRHLVEVKSKSDSLNLVLSNNLTRSLSKEELKEVDVQVLKGVVYISL 149

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------ 281
            D     ++   S          L KI +++       + I G+TD  P    +      
Sbjct: 150 ADNM---LYKSGSYEISDRAEETLSKIAKIITDYSDYDVLIEGNTDNVPVNAQSERMKNI 206

Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R+NW LS  RA S  Q L  + GV   R++   G   +     +D       NRR  I++
Sbjct: 207 RNNWDLSCLRASSVVQYLQTRFGVDPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIII 265

Query: 339 EDR 341
             +
Sbjct: 266 TPK 268


>gi|15595276|ref|NP_248768.1| hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1]
 gi|116054405|ref|YP_788234.1| hypothetical protein PA14_00925 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243187|ref|ZP_04936509.1| hypothetical protein PA2G_03990 [Pseudomonas aeruginosa 2192]
 gi|296386560|ref|ZP_06876059.1| hypothetical protein PaerPAb_00450 [Pseudomonas aeruginosa PAb1]
 gi|9945903|gb|AAG03468.1|AE004447_1 hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1]
 gi|115589626|gb|ABJ15641.1| hypothetical protein PA14_00925 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196565|gb|EAZ60628.1| hypothetical protein PA2G_03990 [Pseudomonas aeruginosa 2192]
          Length = 449

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +AD+I    +       +  S++  R   +F  +S+    E   +L +I + L  
Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW+LS  RA     +L  +     R +   G +    
Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423

Query: 321 K--IASDPMNSANRRIDILV 338
               AS    + NRR++I V
Sbjct: 424 VATNASAEGRARNRRVEITV 443


>gi|114763629|ref|ZP_01443023.1| hypothetical protein 1100011001335_R2601_16020 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543630|gb|EAU46643.1| hypothetical protein R2601_16020 [Roseovarius sp. HTCC2601]
          Length = 465

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + A+ +++ L   + + +   V  E++   + + I       MF  +S    P    V+ 
Sbjct: 321 ETAESVTAFLQPEIDEGL---VTVESSGNTLTVQIS---GANMFAPASDTLEPRFAEVVD 374

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           ++   L      I + GH+D  P        N  LSL RA    + + ++ V   RIS  
Sbjct: 375 RVAGALNEEGGQIIVAGHSDNIPINTARFPSNLALSLARAKFVMERISQTLVDSSRISA- 433

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338
            G A      ++D     + NRRI++++
Sbjct: 434 EGRADREPIASNDTPEGRAKNRRIEVIL 461


>gi|89891804|ref|ZP_01203306.1| putative flagellar motor protein MotB [Flavobacteria bacterium
           BBFL7]
 gi|89515959|gb|EAS18624.1| putative flagellar motor protein MotB [Flavobacteria bacterium
           BBFL7]
          Length = 287

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETI 249
           A  +  +L+  +A NI K +   ++   + +SI +        +  +F  SS     +  
Sbjct: 111 ATTLKDSLNIAIAHNIAKKMGSTSSDKDLNVSIEETVVMINIDDDLLFKDSSYRVSNDAD 170

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDR-AYSAYQVLMKSGVS 305
            +L KI EV+A      I + GHTD+   +  +   DNW LS +R A    ++  K GV+
Sbjct: 171 EILAKIAEVVASEPSLEILVEGHTDSRTVKQGSYIKDNWDLSTERSAAIVRRLEEKFGVA 230

Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
            +++  ++G A +    A+D  +  + NRR  I++  
Sbjct: 231 PEQLI-VAGRASYDPIAANDSKDNMARNRRTQIVIMP 266


>gi|107099070|ref|ZP_01362988.1| hypothetical protein PaerPA_01000079 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  +AD+I    +       +  S++  R   +F  +S+    E   +L +I + L  
Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW+LS  RA     +L  +     R +   G +    
Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423

Query: 321 K--IASDPMNSANRRIDILV 338
               AS    + NRR++I V
Sbjct: 424 VASNASAEGRARNRRVEITV 443


>gi|308271290|emb|CBX27898.1| hypothetical protein N47_G32220 [uncultured Desulfobacterium sp.]
          Length = 310

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 17/285 (5%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +   + F P   +    +  + ++    E  S    DL+            + G   
Sbjct: 39  QASEGPAEQFAPAELHKAHEALAVAEQSFIDEPDSHTTKDLAY----VAQRKSEQAGVLG 94

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDLEKSINKEENYFLPPL 178
                + ++N        QQ+E  K      S+ + K      +L+K    +E       
Sbjct: 95  AMAANKEVKNKSNAEFRDQQTEIVKQGKQNLSDSEMKTTAARAELDKLATVKEVKDKSDA 154

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
                 A   ++  Q+L    S   +      + K    +    G+++++       +F 
Sbjct: 155 EFRNQQAEIVEQGKQNLFD--SEMRTAAAQAELAKLAAVKEEERGLVVTLS---GGVLFQ 209

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            + S  LP   V L ++ + L       + + GHTD+         N  LS  RA +   
Sbjct: 210 SAKSTLLPSAQVKLDQVAKALLSIPARNLIVEGHTDSI---GSESYNQGLSQRRADAVRD 266

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            L++ G   DRI +  G         +      + NRR++I++E 
Sbjct: 267 YLVQKGYPADRI-QARGKGEGSPIADNTSPEGRANNRRVEIVIER 310


>gi|42526179|ref|NP_971277.1| OmpA family protein [Treponema denticola ATCC 35405]
 gi|41816291|gb|AAS11158.1| OmpA family protein [Treponema denticola ATCC 35405]
          Length = 422

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ + K     +   V D  ++    E T  G+ ISI        F  +S+I       
Sbjct: 276 EVKKIDKAAEEEIKKSVEDLNLENTTIEKTDEGLTISI----ENIQFLPNSAILRESEKE 331

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L+KIGE+L    +    I GHT          +   LS +RA +    L++ GV +   
Sbjct: 332 KLKKIGEILLKFPDREFLISGHT---ALAGTEEERQALSEERAAAVANYLIELGVQKREH 388

Query: 310 SKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341
               GF   R   A++ P N + NRR++I + D+
Sbjct: 389 VYTRGFGARRPVAANNSPENMAKNRRVEITILDK 422


>gi|145298369|ref|YP_001141210.1| flagellar motor protein MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851141|gb|ABO89462.1| Flagellar motor protein MotB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 305

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 11/186 (5%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGV 215
           L        ++ +      P ++    + +K+    L  +  ++   +  LV   +VK  
Sbjct: 77  LNGEVSAASAVLESARQDSPSIAPISGVPIKQDGTTLATIDTQLQENMGSLVEAGVVK-- 134

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
                   + + +    +  +F   S+        VL  +  +L      + +RG+TD  
Sbjct: 135 -LTLDDNWLTVELS---SGLLFGSGSAFMSTNAEPVLNTLSSILKPVDNYVRVRGYTDNQ 190

Query: 276 PFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
              N I R NW LS  RA +    L+  GV+  R+     +        +D       NR
Sbjct: 191 QINNEIFRSNWTLSAARAEAVLTALIAKGVAPQRL-AYEAYGEFSPFAGNDSEQGRLQNR 249

Query: 333 RIDILV 338
           ++ + +
Sbjct: 250 KVVVAI 255



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 1/136 (0%)

Query: 17  IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++K+  +      +L  W + YAD+MT++ A F+V++ +   + D  +A+          
Sbjct: 1   MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +   S G+ +       + +     ++ E   ++S  +   S    KQ       I    
Sbjct: 61  MPPRSDGLLEGLGTSLLNGEVSAASAVLESARQDSPSIAPISGVPIKQDGTTLATIDTQL 120

Query: 136 NSQQSEHCKNSLTRDS 151
                   +  + + +
Sbjct: 121 QENMGSLVEAGVVKLT 136


>gi|77460334|ref|YP_349841.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77384337|gb|ABA75850.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 270

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +              +  L  +R +     +K +S    G   +  +  +    T  
Sbjct: 89  SEIAREHTNQVLNEERVAKLELERQRLQLALRESKLLSVQQQGKWLEEQIVALATTQTDR 148

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +        V+ KI + L  + + I  I G+TD++      
Sbjct: 149 GLVMTLGD----VLFDTGEAELKNSANRVVLKIVQFLQLNPKRIVRIEGYTDST---GGK 201

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           ++N +LS DRA S   VL   G+ E RI ++ G+       A+  +   + NRR++I+  
Sbjct: 202 QENLKLSRDRAQSVADVLTDLGIDEKRI-QVEGYGDEYPVDANASERGRAQNRRVEIVFS 260

Query: 340 DRQG 343
           D +G
Sbjct: 261 DEKG 264


>gi|261342404|ref|ZP_05970262.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315039|gb|EFC53977.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 451

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 191 RLQDLAKKISS-----TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIP 244
            +QDL+  ++       L+ L+ + I + +L  + ++    + +   +   +F   S   
Sbjct: 297 AMQDLSVPVAQPAMRLKLAVLLRNEIRQQLLSVDESQKQSKVVL---KGDALFLSGSVRV 353

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
            PE + V+++I   +      + I GHTDA+P       +N  LS  RA    Q  + +G
Sbjct: 354 QPEMVKVIERIASEVRRVNGDVVIVGHTDATPISRPGLPNNVVLSEKRAAEVAQYFISAG 413

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + E ++ K+ G    +   +       + NRR++  V
Sbjct: 414 LPESKV-KVRGVGSSQPVASDATAQGRAKNRRVEFFV 449


>gi|167567883|ref|ZP_02360799.1| hypothetical protein BoklE_35363 [Burkholderia oklahomensis EO147]
          Length = 421

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R+  MF   ++        ++ KI   +      +++ G+TD  P ++     N  LS +
Sbjct: 311 RSDAMFSPGAAAVNSTMGPLIAKIAGEIVKVPGKVTVTGYTDNVPIKSRQFASNEALSEE 370

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           RA    Q+L  +GV   R+  + G         +      + NRR+DI V
Sbjct: 371 RATQVMQMLQSAGVPASRLESV-GKGDADPIGDNGTVQGRALNRRVDITV 419


>gi|227536270|ref|ZP_03966319.1| flagellar motor protein MotB [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243877|gb|EEI93892.1| flagellar motor protein MotB [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q+ Q    E      S  +Q  + K +  +  E   +L K+ D   + N + N  +  L 
Sbjct: 49  QQGQLDLTEGRTRIKSLEEQLAYEKANNAQLKEAYANLQKTLDNSINQNSQGNVNISKLV 108

Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
            E   + K  + L +   K       +++ L+  ++   +K V  +  +  + IS+ D  
Sbjct: 109 DEINASNKYIQHLVNTKNKSDSLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLSDNM 168

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLD 290
              ++   S     +    L KI +++       + I G+TD  P      R+NW LS  
Sbjct: 169 ---LYKSGSYEISDKAGETLSKIAKIIQDYKDYEVLIEGNTDTDPISKTNIRNNWDLSTL 225

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           RA S  Q L    GV   R++   G   +     +        NRR  I++  +
Sbjct: 226 RASSVVQALQNTYGVDPKRLTA-GGRGQYNPIADNSTAAGKMKNRRTQIIITPK 278


>gi|309782503|ref|ZP_07677227.1| OmpA domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308918840|gb|EFP64513.1| OmpA domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 415

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+   L+ L+ D I +G +          S +  R   MF    +    +   +L KI  
Sbjct: 273 KVVLRLAELLKDEIARGQV--KVEEDATHSAVTFRGDDMFAGGRADVNAKVQPLLDKIAS 330

Query: 258 VLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      +++ GH+D  P +      N  LS +RA    + L   GV++ R+  + G  
Sbjct: 331 EITKVPGKVTVTGHSDNQPIKTAKFPSNQVLSEERAVHVSEYLASRGVAQGRLEAV-GKG 389

Query: 317 HHRLKIASDP--MNSANRRIDI 336
                  +      +ANRR+ I
Sbjct: 390 DTEPVADNSTWNGRAANRRVQI 411


>gi|160884511|ref|ZP_02065514.1| hypothetical protein BACOVA_02495 [Bacteroides ovatus ATCC 8483]
 gi|298481223|ref|ZP_06999417.1| OmpA family protein [Bacteroides sp. D22]
 gi|156110250|gb|EDO11995.1| hypothetical protein BACOVA_02495 [Bacteroides ovatus ATCC 8483]
 gi|298272797|gb|EFI14364.1| OmpA family protein [Bacteroides sp. D22]
          Length = 297

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q+ Q Q  EN     S  ++    + + +   +   D+    +   + + + N  +  L 
Sbjct: 41  QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 100

Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
            E   +       +K K R   L   + + L+  +    ++ +  +  +  + IS+ D  
Sbjct: 101 DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 160

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290
              ++   S     +   VL KI +++       + + G+TD  P  R   R+NW LS  
Sbjct: 161 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 217

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           RA S  Q L    G++  R++  +G         +D     + NRR +I++  +
Sbjct: 218 RASSVVQALQNIYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 270


>gi|117621479|ref|YP_855927.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562886|gb|ABK39834.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 308

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 11/212 (5%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK- 189
           I  ++ +      ++    + +    L        S+ +      P L+   ++ + +  
Sbjct: 51  IDGMTQAFNVMQPRSDGLLEGQGKSLLNNEVSAASSVLESATARSPSLAPISVVPIAQDG 110

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             L  +  ++  ++  LV   +VK          + + +    +  +F   S+       
Sbjct: 111 MTLAKIDTQLQESMGSLVDAGVVK---LTLNDNWLTVELS---SGLLFGSGSAFMSTNAD 164

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL  +  +L      + +RG+TD     N I R NW LS  RA +    L+  G++  R
Sbjct: 165 PVLNTLSSILKQVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGIAPQR 224

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           +     +        +        NR++ + +
Sbjct: 225 L-AYEAYGEFSPFTDNSTEQGRLQNRKVVVAI 255



 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 1/136 (0%)

Query: 17  IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++K+  +      +L  W + YAD+MT++ A F+V++ +   + D  +A+          
Sbjct: 1   MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
           +   S G+ + Q     +++     S+ E  T  S  L   S     Q       I    
Sbjct: 61  MQPRSDGLLEGQGKSLLNNEVSAASSVLESATARSPSLAPISVVPIAQDGMTLAKIDTQL 120

Query: 136 NSQQSEHCKNSLTRDS 151
                      + + +
Sbjct: 121 QESMGSLVDAGVVKLT 136


>gi|310817527|ref|YP_003949885.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390599|gb|ADO68058.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1779

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 22/280 (7%)

Query: 69   FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
            F        TA      E  P         D   DE    +  + + G  +   Q   + 
Sbjct: 1506 FRILAGVNWTAKPRAKPEPAPVCPLGPEDKDGFEDEDGCADPDNDQDGFPDVSDQCPNVP 1565

Query: 129  NNIFYLSN-----SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
              +    +      +      +     ++         + +     E+    P   ++ I
Sbjct: 1566 ETVNGFEDGDGCPDEVPAPVDSDGDGLTDDKDRCPNQPEDKDGFEDEDGCPDPDNDQDGI 1625

Query: 184  LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            L    K   +           G                 G  I I+       F  +  I
Sbjct: 1626 LDGSDKCPNEPEVINGREDEDGCPDQG-----EVNVRVEGKKILIL---QKVYFATNKDI 1677

Query: 244  PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-M 300
             L  +  +L+++  VL  + +   I + GHTD+         N  LS  RA S    L  
Sbjct: 1678 ILDRSFSLLKQVAAVLRANPQLTKIRVEGHTDSQ---GSDAFNLDLSDRRAKSVRTYLIE 1734

Query: 301  KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            K G++ DR+  + G+   +    +D +     NRR++ ++
Sbjct: 1735 KEGIAADRLEAV-GYGETKPVDTNDTVAGRENNRRVEFII 1773


>gi|323524556|ref|YP_004226709.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1001]
 gi|323381558|gb|ADX53649.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1001]
          Length = 442

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R   MF   ++        ++ KI   +      + + G+TD  P R+     N  LS +
Sbjct: 332 RGDAMFPPGAASVNASMAPLIAKIAAEIVKVPGKVMVFGYTDNVPIRSRQFASNDALSAE 391

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           RA    Q+L  SGV   R+  +  G A       +    + NRR++I V
Sbjct: 392 RATQVLQMLQASGVPAGRLEAVGRGEAAPVGDNRTAQGRAQNRRVEIAV 440


>gi|241663269|ref|YP_002981629.1| type VI secretion system OmpA/MotB family protein [Ralstonia
           pickettii 12D]
 gi|240865296|gb|ACS62957.1| type VI secretion system OmpA/MotB family protein [Ralstonia
           pickettii 12D]
          Length = 415

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K+   L+ L+ D I +G +          S +  R   MF    +    +   +L KI  
Sbjct: 273 KVVLRLAELLKDEIARGQV--KVEEDATHSAVTFRGDDMFAGGRADVNAKVQPLLDKIAS 330

Query: 258 VLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      +++ GH+D  P +      N  LS +RA    + L   GV++ R+  + G  
Sbjct: 331 EITKVPGKVTVTGHSDNQPIKTAKFPSNQVLSEERAVHVSEYLASRGVAQGRLEAV-GKG 389

Query: 317 HHRLKIASDP--MNSANRRIDI 336
                  +      +ANRR+ I
Sbjct: 390 DTEPVADNSTWNGRAANRRVQI 411


>gi|281421937|ref|ZP_06252936.1| OmpA family protein [Prevotella copri DSM 18205]
 gi|281403991|gb|EFB34671.1| OmpA family protein [Prevotella copri DSM 18205]
          Length = 284

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
           +  + +     + K  S+N +   ++L      L+ +Q+      S     +   D   +
Sbjct: 22  ASKKDLQNCQNENKELSSNYQATKEKLAATEASLAAAQEQLATAKSDYAKLQNSLDKSLN 81

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFET 219
              + +++ E+       S + I  +   K   D L   +++ L+  ++   +K V  + 
Sbjct: 82  NASQNNVSIEKLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSKEEMKEVDVQV 141

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFR 278
            +  + IS+ D     ++   S          L KI +++       + + G+TD  P  
Sbjct: 142 LKGVVYISLADNM---LYQSGSYEVNSRAQETLSKIAKIITDYKDYDVLVEGNTDNVPVS 198

Query: 279 NIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NS 329
             +      R+NW LS  RA S  Q L    GV+  R++   G   +     +D      
Sbjct: 199 TTSAKMKNIRNNWDLSALRAASVVQYLQDHFGVNPKRLTA-GGRGEYNPVTTNDTEVGKQ 257

Query: 330 ANRRIDILVEDR 341
            NRR  I++  +
Sbjct: 258 RNRRTQIIITPK 269


>gi|30249028|ref|NP_841098.1| outer membrane protein [Nitrosomonas europaea ATCC 19718]
 gi|30138645|emb|CAD84936.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 220

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +KK+      +       GV+   T    ++++I    +   FD  S+   P+   +L  
Sbjct: 72  SKKMEEQKIQMENATAGTGVVVSQTPDNQLMLNI---PSDISFDTGSAQIKPDFRPILDS 128

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
               L ++    ++I GHTD++   + A +N  LS++RA S  + L   GV   RI +I 
Sbjct: 129 FATSLLNNPGTRVTIVGHTDST--GSDAVNN-PLSVNRAASTREYLASRGVPFQRI-QID 184

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G   ++   +++     + NRR++I V
Sbjct: 185 GRGSYQPVASNNTAAGRAKNRRVEIYV 211


>gi|300772310|ref|ZP_07082180.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760613|gb|EFK57439.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 301

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q+ Q    E      S  +Q  + K +  +  E   +L K+ D   + N + N  +  L 
Sbjct: 49  QQGQLDLTEGRTRIKSLEEQLAYEKANNAQLKEAYANLQKTLDNSINQNSQGNVNISKLV 108

Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
            E   + K  + L +   K       +++ L+  ++   +K V  +  +  + IS+ D  
Sbjct: 109 DEINASNKYIQHLVNTKNKSDSLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLSDNM 168

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLD 290
              ++   S     +    L KI +++       + I G+TD  P      R+NW LS  
Sbjct: 169 ---LYKSGSYEISDKAGETLSKIAKIIQDYKDYEVLIEGNTDTDPISKTNIRNNWDLSTL 225

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           RA S  Q L    GV   R++   G   +     +        NRR  I++  +
Sbjct: 226 RASSVVQALQNTYGVDPKRLTA-GGRGQYNPIADNSTAAGKMKNRRTQIIITPK 278


>gi|254253396|ref|ZP_04946714.1| Outer membrane protein [Burkholderia dolosa AUO158]
 gi|124896005|gb|EAY69885.1| Outer membrane protein [Burkholderia dolosa AUO158]
          Length = 317

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P G   +  +         P  +S   +  +    IT    +   G      +      
Sbjct: 44  TPVGNGTVATAALPAPNAGAPGTASGTVVRGTAG-TITPPPANAVPGQVVVGGKVPDEAT 102

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L   + +    N + +   +  D+    +   ++ K     L  +SK ++     +
Sbjct: 103 KAAVLQKLRDTYGAANVVDQI--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQ 160

Query: 190 KRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             +      +   ++I+S ++  +     I   +    +  G+L   +  R    F+  S
Sbjct: 161 IEMKGEVHNEAQRQQIASDMANTLNPTYTIKNALRVSASEQGLLDQTLANRTIE-FETGS 219

Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   P+   +L ++   L+      + I GHTD          N  LS  RA +    L+
Sbjct: 220 ATLTPQGRQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLI 276

Query: 301 KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
             G+   +++  +G    +    +D     + NRRI+
Sbjct: 277 TKGIPPQQMT-TTGVGPDQPIAPNDMAEGRARNRRIE 312


>gi|237718629|ref|ZP_04549110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452089|gb|EEO57880.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 290

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q+ Q Q  EN     S  ++    + + +   +   D+    +   + + + N  +  L 
Sbjct: 34  QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 93

Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
            E   +       +K K R   L   + + L+  +    ++ +  +  +  + IS+ D  
Sbjct: 94  DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 153

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290
              ++   S     +   VL KI +++       + + G+TD  P  R   R+NW LS  
Sbjct: 154 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 210

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           RA S  Q L    G++  R++  +G         +D     + NRR +I++  +
Sbjct: 211 RASSVVQALQNIYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 263


>gi|326386301|ref|ZP_08207925.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209526|gb|EGD60319.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 229

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 8/145 (5%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   +  L       GV  ++   G  I +++  +   FD  S++  P     L K+ + 
Sbjct: 78  MDKQIKELKEKTAGSGVDVKSVDDGQAI-LVNLPSGVTFDTDSTVIKPGFRDTLDKVADS 136

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I + GHTD++        N  LS +RA      L   GVS  RI + +GF  
Sbjct: 137 LNRYPNSLIDVYGHTDST---GSDAYNQTLSENRARVVADYLSSKGVSSARI-RSTGFGK 192

Query: 318 HRLKIASDP--MNSANRRIDILVED 340
            +   ++D     +ANRR++I +  
Sbjct: 193 TQPVASNDTPEGRAANRRVEIKIVP 217


>gi|291336864|gb|ADD96396.1| OmpA/MotB domain containing protein [uncultured organism
           MedDCM-OCT-S09-C206]
          Length = 211

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 11/207 (5%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N  +      +  ++   G    +   L  S+N+               A ++++     
Sbjct: 10  NEARENAGAGASEQEVLFGGIEGELEKLAASMNEASPQNGEGPGGSSQEAYQKQQNASRT 69

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +++++ L   +   +V+    E     + I++    +   F   ++    E   +L +I
Sbjct: 70  TEELTTALKQQIDQGLVE---VEQRDDKVFITV---GSGGAFPSGTADLTEEAQRILDRI 123

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV-SEDRISKIS 313
                     I++ GHTD  P +N   RDNW L+  RA S  Q + ++G+   DR+S +S
Sbjct: 124 SLAAMSPKSTITVTGHTDDVPIKNAQFRDNWDLAAGRASSVVQAIQRTGLIDGDRLSAVS 183

Query: 314 GFAHHRLK--IASDPMNSANRRIDILV 338
                      A+    S NRRI+I +
Sbjct: 184 -KGETAPLADNATAAGRSENRRIEIEI 209


>gi|32266001|ref|NP_860033.1| flagellar motor protein MotB [Helicobacter hepaticus ATCC 51449]
 gi|32262050|gb|AAP77099.1| flagellar motor component MotB [Helicobacter hepaticus ATCC 51449]
          Length = 251

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
            P  S +  +     +       + SS  S  +     +G + E    G+ + +    + 
Sbjct: 62  SPLNSDQDDVNDSETENESGAISESSSVTSAEIEQMAEEGGILEQMEMGMSLRL---PSN 118

Query: 235 PMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTDASP--FRNIARDNWRLSL 289
             FD  S+      + + LQ++  ++        I +RG+TD +P    +  +DN+ LS 
Sbjct: 119 LFFDSGSAEINNSDVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSS 178

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            R+ S  + L+K+G+S +RI   SG+  H+    +D     + N R++I 
Sbjct: 179 ARSLSVMKNLIKNGISPERI-SFSGYGEHQAIAPNDSALNRAKNNRVEIF 227



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 4/147 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I++T +   + ++  F       
Sbjct: 1   MAKKKKCPECPA-GEKWAVPYADFLSLLLALFIALWAISSTSNADSELLKTEFVKIFDFT 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI---GSTNQKKQYQRLENNIFY 133
           +T+      +      +      +S    +T   ++      G   Q +    L      
Sbjct: 60  LTSPLNSDQDDVNDSETENESGAISESSSVTSAEIEQMAEEGGILEQMEMGMSLRLPSNL 119

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             +S  +E   + +    ++   + K 
Sbjct: 120 FFDSGSAEINNSDVFLYLQRMSAIIKK 146


>gi|114777571|ref|ZP_01452552.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
 gi|114552042|gb|EAU54559.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
          Length = 258

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 165 KSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            ++++ +   LP  S         +  K L D+AK++    +  +             ++
Sbjct: 65  ANLDEGKGPALPTRSIVDGSTAPKRTAKELTDIAKELGQGDAIEI---------MPLDKS 115

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
            + I          F        P+   ++ K+  +        I I GHTDA+P +N  
Sbjct: 116 SLRIRF---PEHIAFAAGHVDLSPKARTLIDKLAIIFQKPEVTEIQIEGHTDATPTKNSD 172

Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              NW LS  RA + +  L + GV   R+   +G       I   P  S  RR+DI ++ 
Sbjct: 173 YPSNWELSAARAMAVFHELAEQGVPRGRMIA-AGMGDQHP-IKGHPELS--RRVDITLKF 228

Query: 341 R 341
           R
Sbjct: 229 R 229


>gi|319793927|ref|YP_004155567.1| type IV / vi secretion system protein, dotu family [Variovorax
           paradoxus EPS]
 gi|315596390|gb|ADU37456.1| type IV / VI secretion system protein, DotU family [Variovorax
           paradoxus EPS]
          Length = 458

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K + L  S D+E+ I        PP      +   R K L  LA +I+     +  D   
Sbjct: 269 KYQLLQTSADVEQRIAAIGRMRPPPAPPAPAVKPLRLKEL--LASEIARGTVSVDEDEHR 326

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
             V F              R   MF    +    + + VL K+ + +   +  + + GH+
Sbjct: 327 SAVSF--------------RGDDMFVPGQARLNAKILPVLDKVADEINQVSGSVQVTGHS 372

Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329
           D  P +     +N  LS  RA +   VL+  GV   RI +  G          A+    +
Sbjct: 373 DNRPIKTREFPNNQVLSEKRADAVTAVLLGKGVVASRI-RTEGRGDTMPVADSATAAGRA 431

Query: 330 ANRRIDILVEDRQG 343
            NRR+DI+V    G
Sbjct: 432 RNRRVDIVVIQGDG 445


>gi|86160609|ref|YP_467394.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777120|gb|ABC83957.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 248

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267
             + K    + T  G+L+ +   +   +FD  SS   PE I  L+++G++LA    + I 
Sbjct: 117 KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAIGKLEQMGDILAKYGDDRIR 173

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325
           I G+TD++  +++   N  LSL RA +  +VL+  GV E +I+ + G    R    +   
Sbjct: 174 IEGYTDSTGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGSA 229

Query: 326 PMNSANRRIDILVE 339
              + NRR+++ ++
Sbjct: 230 TGRAQNRRVELHID 243


>gi|159186121|ref|NP_356322.2| OmpA-like porin [Agrobacterium tumefaciens str. C58]
 gi|159141255|gb|AAK89107.2| OmpA-like porin [Agrobacterium tumefaciens str. C58]
          Length = 501

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            +E    L  +         E    + P    K +A ++  RL+    K+ + L   V  
Sbjct: 294 PTETPSVLISNPPPHPPAQVEIPRVVEPP---KTVAPRQPSRLE----KLMAFLQPEVDK 346

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
            +   V        + + I    N+ +F   S+   P+   ++Q+IG  LA       + 
Sbjct: 347 KL---VTLADVNGRLRVRI---NNSGLFTTGSADVSPQFRDLIQRIGGALAAEKFRAVVI 400

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
           G+TD  P + +    NW LS  RA +   +L +    +  ++   G A         ++ 
Sbjct: 401 GYTDTVPIKTVEFPSNWHLSEARAKAVGDILSQFTGPDAILT--EGRADSDPIADNKTEE 458

Query: 327 MNSANRRIDILVED 340
               NRR +I+V  
Sbjct: 459 GRQINRRTEIMVLT 472


>gi|91202869|emb|CAJ72508.1| similar to flagellar motor protein MotB [Candidatus Kuenenia
           stuttgartiensis]
          Length = 223

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 13/196 (6%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL--VADNI 211
           G   C   D  + +N+ +   +   S E      +   + +  K     +  L  +A++I
Sbjct: 18  GMTGCAELDELRVLNRRQAITIRDQSDEIARYRNQLTSMSEKIKASEEEMEKLRKLAESI 77

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
             GV    T  G +I         +FD   +         L+K+   L  +    + I G
Sbjct: 78  GGGVSVRDTFEGPVILF---PEMILFDSGMATIKAHGEDALRKMARFLEENPASSLRIDG 134

Query: 271 HTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP 326
           HTD+ P    +++   N  LS  RA S +  L K G + E RI  I+GF  +R    +  
Sbjct: 135 HTDSDPIIKTKHLWDSNHHLSAARALSVFHFLTKKGNIPEQRIH-IAGFGPNRPIAPNTT 193

Query: 327 MNSA--NRRIDILVED 340
                 NRR++ L+  
Sbjct: 194 PAGKKENRRVEFLILP 209


>gi|73539085|ref|YP_299452.1| OmpA/MotB [Ralstonia eutropha JMP134]
 gi|72122422|gb|AAZ64608.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 575

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           I+  +  +F   S++  P +  VL    E++    +  + + GHTDA      A+ N +L
Sbjct: 440 IELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLVAGHTDAV---GAAQSNLKL 496

Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           S  RA S    L   +G+   R   I G+   R K  +D     SANRR++I +  
Sbjct: 497 SEARAASVRDWLADAAGLPVTRF-AIQGYGDTRPKAPNDTEAGRSANRRVEITLVP 551


>gi|296159295|ref|ZP_06842121.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. Ch1-1]
 gi|295890554|gb|EFG70346.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. Ch1-1]
          Length = 443

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 5/159 (3%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQRNTPMFDKSS 241
           + + +K++ D+ +        L    ++K  +     +       S +  R   MF   +
Sbjct: 283 SAEVRKQIADIGRMTPPATRALHLKELLKNEIAAGTVSVDEDAHHSSVTFRGDSMFPPGA 342

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300
           +        ++ KI   +A  +  +S+ G+TD  P ++     N  LS +RA    Q+L 
Sbjct: 343 AAVKTSMTPLITKIAGEIAKVSGKVSVLGYTDNVPIKSRQFASNAALSEERATQIMQMLQ 402

Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            +GV   R+  +  G A       +    + NRR++I V
Sbjct: 403 TAGVPAVRLEAVGRGDADPVGDNTTVQGRAQNRRVEITV 441


>gi|332704885|ref|ZP_08424973.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332555034|gb|EGJ52078.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 222

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G     TR G +I I++      FD  S+   P+   VL  +  VL    +  + + G
Sbjct: 92  LQGTGVSVTRQGDMI-ILNMPGNVTFDTGSAGIKPQFFEVLNSVAIVLKEYEKTYVDVLG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++   N+   N RLS DRA S  Q L+  GV ++R   + G   ++    +      
Sbjct: 151 HTDSTGSMNL---NMRLSQDRAQSVAQYLISQGVQQERFL-VRGMGPNQPIADNSTAAGR 206

Query: 331 --NRRIDILVED 340
             NRR++I +  
Sbjct: 207 SQNRRVEIKLTP 218


>gi|319778087|ref|YP_004134517.1| type IV / vi secretion system protein, dotu family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317171806|gb|ADV15343.1| type IV / VI secretion system protein, DotU family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 498

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 15/196 (7%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           ++ + +       + +    +  E     P +   K+       ++  +   ++  + G 
Sbjct: 308 ISNEGDAAAGELLALNPSIPVAIERASVAPLVEPAKVAPPAANAQIDRIRAALAKDVEG- 366

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
                  G+   T    I++ I    N  +F    +   PE   +   I   L H    I
Sbjct: 367 ------GGLAIGTKGDFIVVEI---NNLLLFQSGRAETKPEFQPIAADIAAALEHEPGPI 417

Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
            I GHTD    R  +  + N+ LSL RA +  + LM +  S+     + G          
Sbjct: 418 RIVGHTDNVKPRRSSAFKSNFDLSLARAKAV-EALMAAKFSDPSRLTVDGKGEDEPIAEN 476

Query: 323 ASDPMNSANRRIDILV 338
           A+    + NRR+D+++
Sbjct: 477 ATPEGRARNRRVDVMI 492


>gi|167574381|ref|ZP_02367255.1| hypothetical protein BoklC_31379 [Burkholderia oklahomensis C6786]
          Length = 421

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R+  MF   ++        ++ KI   +      +++ G+TD  P  +     N  LS +
Sbjct: 311 RSDAMFSPGAAAVNSTMGPLIAKIAGEIVKVPGKVTVTGYTDNVPINSRQFASNEALSEE 370

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           RA    Q+L  +GV   R+  + G         +      + NRR+DI V
Sbjct: 371 RATQVMQMLQSAGVPASRLESV-GKGDADPIGDNGTVQGRALNRRVDITV 419


>gi|116694470|ref|YP_728681.1| hypothetical protein H16_B0519 [Ralstonia eutropha H16]
 gi|113528969|emb|CAJ95316.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 215

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      + +   L+  +A           T     I I       +
Sbjct: 43  ELSARLEAEVKQRQEEAQRRETLEKALAAPLAAG-------RVTLVNGRIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ + + L+       E++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRDLLKSLAQPLSAYLRSRDEILMVSGFTDDQQVREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A     + NRR++I
Sbjct: 153 QRALTVTRTLIDAGIPPTSVFSAA-FGSQQPVTPNADAEGRAKNRRVEI 200


>gi|89053531|ref|YP_508982.1| hypothetical protein Jann_1040 [Jannaschia sp. CCS1]
 gi|88863080|gb|ABD53957.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 799

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           +    E +   +      +  Q +Q  R    +     + +++           + +D  
Sbjct: 544 EAETRETLLAQANIELAEAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDRDEE 603

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
               ++   ++         ++E+  A      ++ LA + +  L    ++   +     
Sbjct: 604 AQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERLAAE-AQELERYRSEFFGRLRELL 662

Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISI 268
             R G+ I        +  +F+  S+    E +  ++ +  +L             +I +
Sbjct: 663 EGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWIIRV 722

Query: 269 RGHTDASPFRNI--ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325
            GHTD    R      +NW LS  RA +    +  + G+   R++  +GF  HR    +D
Sbjct: 723 DGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAA-TGFGEHRPIAPND 781

Query: 326 PMN--SANRRIDILVEDR 341
                +ANRRI++ + +R
Sbjct: 782 TDEGQAANRRIELKLTER 799


>gi|304397299|ref|ZP_07379178.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB]
 gi|304355448|gb|EFM19816.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB]
          Length = 412

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +++      + V+Q+I   + + +  I + G++D  P R+     N+
Sbjct: 281 SVVTLKGDGLFASAATDVRGRYVDVIQRIAAAMNNVSGQIQVIGYSDNVPIRSARFGSNF 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            LSL RA S   +L +      R+    G       + ++     + NRR++I + 
Sbjct: 341 ELSLARARSVQSLLQQQLADPSRVKA-EGRGESNPLVPNNSAENRARNRRVEITLL 395


>gi|225620337|ref|YP_002721594.1| putative flagellar motor protein [Brachyspira hyodysenteriae WA1]
 gi|225215156|gb|ACN83890.1| putative flagellar motor protein [Brachyspira hyodysenteriae WA1]
          Length = 266

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVLQK 254
           + I    S L ++   + V  E    G +IS+   +    F+ +S+        +    K
Sbjct: 104 RSIDKATSVLESEIKSRKVRIEEDERGFIISLGADQ---YFESASTNLVDNQNNVETFIK 160

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDRAYSAYQVL----MKSGV 304
           +  VL+     + I GHTD+              +NW LS  RA    + +        +
Sbjct: 161 LASVLSGLPNDVRIEGHTDSGSIIPGSITEQKFGNNWGLSSARAMVILEKIFENDQAGKL 220

Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
             ++   I+G+A  R   ++D     + NRR+DI+V  
Sbjct: 221 DRNK-YSIAGYADTRPVASNDLPDGRALNRRVDIVVVR 257


>gi|150024175|ref|YP_001295001.1| flagellar motor/chemotaxis (MotB)-related protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149770716|emb|CAL42180.1| Flagellar motor/Chemotaxis (MotB)-related protein [Flavobacterium
           psychrophilum JIP02/86]
          Length = 320

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 113/313 (36%), Gaps = 26/313 (8%)

Query: 45  MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104
           +   ++    +         +E  F    K     S          E     K    +D 
Sbjct: 7   LGLLVLSLTTSCVSKKIFADLETKFAELKKERNALSD-------ENETLKTTKNQFQLDN 59

Query: 105 HITKNSVDLKIGSTNQ-KKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKST 161
              K  +D      ++    Y    NN+  L +S  +  ++   SL  + +K +DL    
Sbjct: 60  ATLKTELDKLKAERDKLAADYAASSNNLKTLQSSYNALEKNSDESLKANMDKNRDLLAQL 119

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-------AKKISSTLSGLVADNIVKG 214
           + ++     E   L  LS +      R   L+ L        KK+  TLS  +     KG
Sbjct: 120 EAKEKALAAEKGRLAKLSGDLKDRSDRVNELEALIAAKEASMKKLKETLSKSLKAFEGKG 179

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  +     + +S+    N  +F+  S     E    +  + +VL  + ++ I I GHTD
Sbjct: 180 LTVQQKDGKVYVSM---ENKLLFESGSWAVGTEGKKAVVAVAKVLGDNPDISILIEGHTD 236

Query: 274 ASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
              F        +NW LS  RA S   +L ++     +    +G       +++D     
Sbjct: 237 NDKFAGAVGQIENNWDLSTKRATSIVNILGENPKVNKQNLTAAGRGEFSPLMSNDTPEGK 296

Query: 329 SANRRIDILVEDR 341
           + NRRI+I++  +
Sbjct: 297 AKNRRIEIILTPK 309


>gi|126741155|ref|ZP_01756836.1| hypothetical protein RSK20926_01547 [Roseobacter sp. SK209-2-6]
 gi|126717792|gb|EBA14513.1| hypothetical protein RSK20926_01547 [Roseobacter sp. SK209-2-6]
          Length = 474

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +++   K+S  L   +A  IVK       + G  + II    + MF   S          
Sbjct: 326 IEEQIAKVSGFLEPEIAGGIVK-----VFQKG-NVLIIRLAGSGMFGSGSDQLSKAFRTP 379

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +Q++ E L      + + GH+D  P R+     N  LSL RA S  + + K+    +R+S
Sbjct: 380 VQRLAEALNDEKGQVIVVGHSDNIPIRSSRFPSNMALSLARAKSVMEGMAKAMAEPERLS 439

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
              G A       +      + NRRI+IL+    G
Sbjct: 440 A-EGRADQEPIADNGTKAGRAKNRRIEILLVQEVG 473


>gi|91215422|ref|ZP_01252393.1| outer membrane protein, OmpA/MotB family [Psychroflexus torquis
           ATCC 700755]
 gi|91186374|gb|EAS72746.1| outer membrane protein, OmpA/MotB family [Psychroflexus torquis
           ATCC 700755]
          Length = 457

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 94/298 (31%), Gaps = 18/298 (6%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           W  +      K + +  F     +    S G+       +       D +          
Sbjct: 161 WFTDNIAFTVKSSFKTAFEDDNFDYFQHSAGLTIAFGGTDSDGDGVYDKNDMCPDVPGLA 220

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN--- 168
           +      +        ++     +  ++ + C +S +       D C +    +++N   
Sbjct: 221 EFNGCPDSDGDGITDKDDKCPDTAGLEEFDGCADSDSDGIADPNDDCPNEAGTEALNGCP 280

Query: 169 -------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
                    +N   P  +  K                    +   VA         E T 
Sbjct: 281 DADNDGIANKNDDCPNEAGPKANNGCPYPDADGDGVLDKDDMCPDVAGTEANNGCPEVTE 340

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
             I   + +   T  F+   +     +   L  I  +L        ++ GHTD+      
Sbjct: 341 E-IQKELNEYAKTINFETGKTTISKNSEEALTAIIAILDEYPNAKFTVEGHTDSV---GS 396

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           A++N  LS  RA S    L+K+GV E R+S  +GF   +   ++D     + NRR++I
Sbjct: 397 AKNNESLSEARALSVKSYLVKNGVDEFRLSS-AGFGEQKPVESNDTKAGRAENRRVEI 453


>gi|149925997|ref|ZP_01914260.1| hypothetical protein LMED105_03075 [Limnobacter sp. MED105]
 gi|149825285|gb|EDM84496.1| hypothetical protein LMED105_03075 [Limnobacter sp. MED105]
          Length = 454

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
              +F+  S+      I +++K+   LA     I++ G+TD  P R+I    NW+LS +R
Sbjct: 344 GDGLFNSGSAELNDSAIPLVEKVARKLALHPGQITVTGYTDNQPIRSIRFPSNWQLSAER 403

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           A    Q +       +      G         +D     + NRR++I++   Q
Sbjct: 404 AEHVGQRIAT--FLPNTAIATEGAGAANPIAPNDSAQGRARNRRVEIMLTHNQ 454


>gi|313206839|ref|YP_004046016.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312446155|gb|ADQ82510.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
 gi|315023913|gb|EFT36915.1| putative flagellar motor protein MotB [Riemerella anatipestifer
           RA-YM]
          Length = 278

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +    R   L   +S+ L   + +   + V  +  +  ++IS+ D+    ++       L
Sbjct: 106 ISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVVMISLSDKM---LYRSGDYNIL 162

Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302
           P    VL K+ +V+       + I G+TD  P  + +  +DNW LS  RA S  +VL   
Sbjct: 163 PAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQNQ 222

Query: 303 -GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            GV   RI+   G + +  K  +      + NRR +I++  +
Sbjct: 223 FGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 263


>gi|239905381|ref|YP_002952120.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239795245|dbj|BAH74234.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 234

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 10/186 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV--ADNIV 212
           +D    +  +    ++   F+ P + +     K  +    L  +I+  +  L+    N+ 
Sbjct: 36  QDKNVPSKEKTQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEIAILIKELITSDQNVK 94

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
                    +G+L+ +    N+ MF   S+   P    ++  + ++L      +++RGH 
Sbjct: 95  NNSGVSNDSSGVLMQV---NNSVMFKPGSAEITPAAAKIMDGVAKILRDFKINLTVRGHA 151

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNS 329
           D           W LS  RA +A + L  K+G+   R+  + G A  +  +   S    S
Sbjct: 152 DDDEGSGPYPSKWELSAARAAAAVRYLSEKAGIPSTRLRAV-GLADSQPLVPPTSAENKS 210

Query: 330 ANRRID 335
            NRRI+
Sbjct: 211 RNRRIE 216



 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 45/127 (35%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94
           + YADF+T +MAFFL++W++ +    TK+ +   F          ++ +          +
Sbjct: 1   MAYADFVTAMMAFFLLLWLVVSLKPQTKQELSLVFQDKNVPSKEKTQNLEKVPTFISPDA 60

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
                        K   ++ I         Q ++NN    ++S       N+        
Sbjct: 61  IKGSPEFKLSQENKLKYEIAILIKELITSDQNVKNNSGVSNDSSGVLMQVNNSVMFKPGS 120

Query: 155 KDLCKST 161
            ++  + 
Sbjct: 121 AEITPAA 127


>gi|300715167|ref|YP_003739970.1| OmpA family protein [Erwinia billingiae Eb661]
 gi|299061003|emb|CAX58110.1| OmpA family protein [Erwinia billingiae Eb661]
          Length = 412

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S+        VL +I + + +    I + G++D  P R+     N+
Sbjct: 281 SVVTLKGDGLFTSASTSVRGRYEEVLDRIAQAMNNVNGRILVIGYSDNVPIRSARFASNY 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSL RA S  + L +      R+    G       + +      + NRR+DI + 
Sbjct: 341 ELSLARAQSVQERLQQHLSQPQRVKA-EGRGESNPLVPNTTAENRARNRRVDITLL 395


>gi|254440394|ref|ZP_05053888.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198255840|gb|EDY80154.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 315

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 9/236 (3%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           + ++D+   + + ++  ++ +     +  +  +              + L     +   I
Sbjct: 83  RVAIDMNAENASPQELIEKFQRVGQAVEIAGLATGKAEQEVLFGGLDQTLNDLITMVSEI 142

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            ++E         E   A+ +  R  + A++    L   +   I +G++    R G  I 
Sbjct: 143 QRQEQESGGATLDE---ALNQMARAIEKAREAEEQLRANLQSEIEQGLVTVEQRDG--IV 197

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNW 285
            +       F   S+    +  ++++++G V +     + + GHTD  P     + RDNW
Sbjct: 198 FVSLGAGGAFPSGSADLTQQASIIIEELGAVTSDPASRVIVSGHTDNVPISFGALYRDNW 257

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            L+  RA S  Q +  +   + R      F   +    +        NRRI+I +E
Sbjct: 258 DLAAARAASVVQAIEATNPVQGRTMSAVSFGQTQPIADNFTAEGREQNRRIEIEIE 313


>gi|325335721|gb|ADZ11995.1| Flagellar motor protein [Riemerella anatipestifer RA-GD]
          Length = 281

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +    R   L   +S+ L   + +   + V  +  +  ++IS+ D+    ++       L
Sbjct: 109 ISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVVMISLSDKM---LYRSGDYNIL 165

Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302
           P    VL K+ +V+       + I G+TD  P  + +  +DNW LS  RA S  +VL   
Sbjct: 166 PAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQNQ 225

Query: 303 -GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            GV   RI+   G + +  K  +      + NRR +I++  +
Sbjct: 226 FGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 266


>gi|115379068|ref|ZP_01466194.1| hypothetical protein STIAU_2752 [Stigmatella aurantiaca DW4/3-1]
 gi|115363928|gb|EAU63037.1| hypothetical protein STIAU_2752 [Stigmatella aurantiaca DW4/3-1]
          Length = 831

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 22/280 (7%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F        TA      E  P         D   DE    +  + + G  +   Q   + 
Sbjct: 558 FRILAGVNWTAKPRAKPEPAPVCPLGPEDKDGFEDEDGCADPDNDQDGFPDVSDQCPNVP 617

Query: 129 NNIFYLSN-----SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
             +    +      +      +     ++         + +     E+    P   ++ I
Sbjct: 618 ETVNGFEDGDGCPDEVPAPVDSDGDGLTDDKDRCPNQPEDKDGFEDEDGCPDPDNDQDGI 677

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L    K   +           G                 G  I I+       F  +  I
Sbjct: 678 LDGSDKCPNEPEVINGREDEDGCPDQG-----EVNVRVEGKKILIL---QKVYFATNKDI 729

Query: 244 PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-M 300
            L  +  +L+++  VL  + +   I + GHTD+         N  LS  RA S    L  
Sbjct: 730 ILDRSFSLLKQVAAVLRANPQLTKIRVEGHTDSQ---GSDAFNLDLSDRRAKSVRTYLIE 786

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           K G++ DR+  + G+   +    +D +     NRR++ ++
Sbjct: 787 KEGIAADRLEAV-GYGETKPVDTNDTVAGRENNRRVEFII 825


>gi|162450713|ref|YP_001613080.1| ompA family outer membrane protein [Sorangium cellulosum 'So ce
           56']
 gi|161161295|emb|CAN92600.1| omp A family outer membrane protein [Sorangium cellulosum 'So ce
           56']
          Length = 578

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 104/273 (38%), Gaps = 25/273 (9%)

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           G  L+  S GI D            I    D         + +   + +   Q   ++  
Sbjct: 322 GVALVGGSFGIADSDAR-SPGFNYVITAEKDTDGDGYPDVIDLCPEDPEDGKQPKPSDGC 380

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
                +  +   + + +  +  +D     D +    ++ +    P +++K      +  +
Sbjct: 381 PDMPDRDGDGIPDVVDKCPDDPEDKDGIDDRDGCPEEDADQDGIPDAEDKCPKEPGQVVV 440

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +D               N     +   T +   I I+ Q     F+  SS  LP++  +L
Sbjct: 441 ED------------PEKNGCPFYIRRITGSA-EIEIMKQVE---FEFDSSRILPQSYPIL 484

Query: 253 QKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            ++  +L  + E+  +SI GHTD      I  ++ RL+ +RA +    L+  GV  +R++
Sbjct: 485 DEVVRLLKANPEIKLLSIEGHTDNQ--GTIDYND-RLAHNRAIAVRVYLINKGVQSERLT 541

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            I G+   R  +++D       NRR++  ++ +
Sbjct: 542 SI-GYGSRRPLLSNDTPEGRQRNRRVEFHIKSQ 573


>gi|315635427|ref|ZP_07890693.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315480185|gb|EFU70852.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 316

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I++  +    + ++K    +     +LI+ I +     F++ SSIP  ++   +++I ++
Sbjct: 176 INNQQNENSNEEVIKNETLKLPEIQLLINNILKDKKISFERKSSIPTEQSQNTIKEIAKI 235

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +    + + GHTD+   R  A  N ++S DRA S   +L+ SGV+E RI  I G+  
Sbjct: 236 LNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSVKNILVNSGVNETRIKAI-GYGE 291

Query: 318 HRLKIASDPM--NSANRRIDILV 338
                  D    +  NRR++ ++
Sbjct: 292 EFPIAKDDENGLSEINRRVEFII 314


>gi|254787924|ref|YP_003075353.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901]
 gi|237683974|gb|ACR11238.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901]
          Length = 304

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 99/244 (40%), Gaps = 13/244 (5%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
              + I +       G+ + + ++Q+        +  + ++H ++    D    +     
Sbjct: 59  EAGKSIARLETLENDGADDYELEHQQYLAERKLDTAIELAKHNRSQEYIDDADVRRKDLM 118

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
               +    +       +      A +R +     A  +    S + +   ++ V  +  
Sbjct: 119 LQARERDLTQAEREAAFMKSRAEAAEQRAEMAVARANSMEEKASQMASK--LESVTTKLD 176

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
           + G++I++ D     +F    S   P  +  L+K+ ++LA   +  I + G TD++    
Sbjct: 177 KRGLVITMGD----ILFATDESEVKPGAVRTLEKVSDLLAEYPDREILVEGFTDST---G 229

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
            A  N  LS  RA +  + L+ +G++EDR+S   G+       ++D       NRR++++
Sbjct: 230 AADYNKNLSERRAEAVVKQLVDNGLAEDRLSA-KGYGEEYPVASNDTAAGRQQNRRVELV 288

Query: 338 VEDR 341
           V ++
Sbjct: 289 VANK 292


>gi|330810957|ref|YP_004355419.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379065|gb|AEA70415.1| putative lipoprotein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 269

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             + +N+E    L    +   LA++  K L    +       G   +  +  +    T  
Sbjct: 95  SNQVLNEERAAKLELERQRLQLALRESKLLSVQQQ-------GKWLEEQIMAMATTQTDR 147

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +        V+ KI + L  + + +  I G+TD++      
Sbjct: 148 GLVMTLGD----VLFDTGEAELKNSANRVVLKIVQFLQLNPKRVVRIEGYTDST---GGK 200

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVE 339
           ++N +LS DRA +   VL+  GV E RI ++ G+         AS+   + NRR++I+  
Sbjct: 201 QENLKLSRDRAQAVADVLVDLGVDEKRI-QVEGYGDQYPVDVNASERGRAQNRRVEIVFS 259

Query: 340 DRQG 343
           D +G
Sbjct: 260 DEKG 263


>gi|323343250|ref|ZP_08083477.1| OmpA family protein [Prevotella oralis ATCC 33269]
 gi|323095069|gb|EFZ37643.1| OmpA family protein [Prevotella oralis ATCC 33269]
          Length = 287

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 130 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAQTTLSKIAKI 186

Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS  RA S  Q L    GV   R++   G 
Sbjct: 187 IMDYKDYDVLIEGNTDNVPISRENIRNNWDLSCLRASSVVQYLQNHYGVDPKRLTA-GGR 245

Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341
             +    ++        NRR  I++  +
Sbjct: 246 GEYNPIASNGTEVGRQRNRRTQIIITPK 273


>gi|325982116|ref|YP_004294518.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531635|gb|ADZ26356.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 237

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVV 251
           L +K+  T+S           + +T     +I    I+   +   F     I    +  V
Sbjct: 82  LTEKVEKTISQDENPPAATEEIIDTVPPLDVIDRPRILAIFDGKTFRSGQDIIHDVSHSV 141

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +  + + ++ S    I I GHTD  P   I+ DN  LS  RA +   VL+  GV   RI 
Sbjct: 142 IDNLIKEISASPNSRILIEGHTDNIPTGKISSDNMDLSRRRARAIANVLILHGVPATRI- 200

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            I G+   R  +++  D   + NRR+++ +   +G
Sbjct: 201 SIIGYGDKRPIVSNATDEGRAKNRRVEVKLMPPEG 235


>gi|254467608|ref|ZP_05081017.1| OmpA family protein [Rhodobacterales bacterium Y4I]
 gi|206684356|gb|EDZ44840.1| OmpA family protein [Rhodobacterales bacterium Y4I]
          Length = 474

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           ++   K++  L   + + IV+      T   ++I +     + MF   S          +
Sbjct: 327 EEQVAKVAGFLEPEIKEGIVQVFQKGNT---LIIRLT---GSGMFGSGSDQLSKAFRNPV 380

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            ++ E L      I + GH+D  P R+     N  LSL RA S    +       DR+S 
Sbjct: 381 NRVAEALNDEKGKIIVAGHSDNVPIRSSRFPSNMALSLARAKSVMAGMANVMTDPDRLSA 440

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343
             G A       +      + NRRI+I LV++ QG
Sbjct: 441 -EGRADKEPIADNSTRDGRAKNRRIEILLVQEVQG 474


>gi|312962530|ref|ZP_07777021.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311283457|gb|EFQ62047.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 271

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +    E       + +  L  +R +     +K IS    G   +  +  +    T  G++
Sbjct: 93  AREHTEQALNEERAAKLELERQRLQLALRESKLISVQQQGKWLEEQIASLTTTQTDRGLV 152

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDN 284
           +++ D     +FD   +         + KI + L  + + +  I G+ D +      ++N
Sbjct: 153 MTLGD----VLFDTGEAELKNSANRTVLKIVQFLQLNPKRVVRIEGYADNT---GGQQEN 205

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            +LS DRA S   VL+  G+ E RI ++ G+         AS+   + NRR++I+  D +
Sbjct: 206 LKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFSDEK 264

Query: 343 G 343
           G
Sbjct: 265 G 265


>gi|319786952|ref|YP_004146427.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465464|gb|ADV27196.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 216

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 16/169 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  +    +  + R +    K    L   +A  +  G +         I I   R   +
Sbjct: 39  GVQLQLSARLDEEVRQRQAEAKQRHALEQALAVPLADGRVTLVDG---RIGI---RGNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   VL+ +   LA       +V+ + G TD  P     R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRQVLRSLAAPLARYLEAGEQVLMVSGFTDDRPVHEGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
            RA +  + L++ GV  D +   + F   +    +D     + NRR++I
Sbjct: 153 QRALTVTRALIEEGVPADSVFAAA-FGAQQPVSPNDDEEGRARNRRVEI 200


>gi|326334458|ref|ZP_08200670.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693425|gb|EGD35352.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 455

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T +FD   +    ++  VL +I  VL         I GHTD++        N  LS +R
Sbjct: 349 KTILFDTGKATIKFQSADVLNQIISVLNKFPNSRFRIEGHTDST---GKKAKNQVLSQNR 405

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A +    L++ G+  +R+  + G+   +   ++        NRR++I
Sbjct: 406 ADAVKVYLIQGGIDANRLESV-GYGQDKPIASNKTKKGRELNRRVEI 451


>gi|115376920|ref|ZP_01464141.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310825376|ref|YP_003957734.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366099|gb|EAU65113.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398448|gb|ADO75907.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 374

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 102/287 (35%), Gaps = 14/287 (4%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
                  +            A++ +   Q    R SQ ++D +  + +    +  +    
Sbjct: 88  KAQLAEAQASIAVAQHQRAVAAQALRQTQEAQRRQSQAQLDAAQRQLLEARRLRDEAAQL 147

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            + ++ Q     +      Q+++  +  + R +++ +   ++    + + + E       
Sbjct: 148 AEARRLQSQTVQL-----QQEAQRRQEEMDRLAQEQRQRSEAETQAQRLAQAEQALEVER 202

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
                   +  +  +  A+  +   + L        +       G ++++     + +F 
Sbjct: 203 RARAEAETRAAEEREARARAEAQAATALAGLARQGELKVSEDARGTVLTLS---GSVLFA 259

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
                 LP     L ++ E L  +   ++I GHTDA       R N  LS  RA      
Sbjct: 260 SGEDDLLPSARSKLSEVAEALKPTHNRLTIEGHTDAQ---GADRFNEDLSFRRAERVRNF 316

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           L+  GV+ +R+  + G   +R   ++      + NRR++I+++    
Sbjct: 317 LVSQGVAANRVE-VRGLGEYRPVASNSTAEGRANNRRVEIILQRGDA 362


>gi|186470892|ref|YP_001862210.1| DotU family type IV/VI secretion system protein [Burkholderia
           phymatum STM815]
 gi|184197201|gb|ACC75164.1| type IV / VI secretion system protein, DotU family [Burkholderia
           phymatum STM815]
          Length = 410

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293
            +F+   S   P    ++  IG+ +A +   + + GHTD+ PF ++ R  N  LS  RA 
Sbjct: 303 GIFEAGQSSVNPWVKPLITTIGQEVAKTPGRVLVTGHTDSQPFSHMQRSSNLALSDARAQ 362

Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
              Q+L+ +GV+ DRI     G A      A+      NRR++I V
Sbjct: 363 EVAQILVSAGVATDRIDSTGKGNAEPAADNATPQGRLRNRRVEITV 408


>gi|91783726|ref|YP_558932.1| hypothetical protein Bxe_A2088 [Burkholderia xenovorans LB400]
 gi|91687680|gb|ABE30880.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 443

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQRNTPMFDKSS 241
           + + +K++ D+ +        L    ++K  +     +       S +  R   MF   +
Sbjct: 283 SAEVRKQIADIGRMTPPVTRALHLKELLKNEIAAGTVSVDEDAHHSSVTFRGDSMFPPGA 342

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300
           +        ++ KI   +A     +++ G+TD  P ++     N  LS +RA    Q+L 
Sbjct: 343 AAVKTSMTPLITKIAGEIAKVPGKVTVLGYTDNVPIKSRQFASNAALSEERATQIMQMLQ 402

Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            +GV   R+  +  G A       +    + NRR++I V
Sbjct: 403 TAGVPAVRLEAVGRGDADPIGDNTTVQGRAQNRRVEITV 441


>gi|261879154|ref|ZP_06005581.1| OmpA family protein [Prevotella bergensis DSM 17361]
 gi|270334253|gb|EFA45039.1| OmpA family protein [Prevotella bergensis DSM 17361]
          Length = 284

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 15/244 (6%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           +N       +    K+              Q S+  ++  +  +   K L  ++D   +I
Sbjct: 30  QNENRELTSNYQSAKEQLAASQARVSSLEDQLSQQKRDYASLQNSLDKSLANTSDNNINI 89

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
           +K  +         + L   + K    L   +++ L+  ++   +K V  +  +  + IS
Sbjct: 90  SKLVDQINESNQYIRHLVDVKSKS-DSLNMVLTNNLTRSLSREEMKEVDVQVLKGVVYIS 148

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA----- 281
           + D     ++   S          L KI +++       + I G+TD  P    +     
Sbjct: 149 LADNM---LYKSGSYEINDRAEETLGKIAKIIMDYKDYDVLIEGNTDNVPINTSSELMKN 205

Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            R+NW LS  RA S  Q L+   GV+  R++   G        ++D       NRR  I+
Sbjct: 206 IRNNWDLSALRASSVVQYLIDHFGVAPGRLTA-GGRGEFNPIASNDTALGKQRNRRTQII 264

Query: 338 VEDR 341
           +  +
Sbjct: 265 ITPK 268


>gi|332877182|ref|ZP_08444932.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684925|gb|EGJ57772.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 284

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 16/254 (6%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           ++  ++    +   K+  + Q  + + +       S  ++    + +          L  
Sbjct: 15  VTKKQYAQLQTDYNKLDKSYQDTKMKLVACGTKSKSLEERLAEAQKANEELKASYAALQG 74

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIV 212
           S D     N + N  +  L  E   + K  K+L +   K       +++ L+  ++   +
Sbjct: 75  SLDKSIQQNSQGNVNISKLVDEINASNKFIKQLVEAKDKSDSLNMVLTNNLTRSLSREEM 134

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGH 271
           K V  +  +  + IS+ D     ++   S          L KI +++       + I G+
Sbjct: 135 KDVDIQVLKGVVYISLADNM---LYKSGSYEISERAGETLSKIAKIIMDYKEYEVLIEGN 191

Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS 329
           TD  P      R+NW LS  RA S  Q L    GV   R++  +G   +    ++D    
Sbjct: 192 TDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTA-AGRGEYNPVASNDTPEG 250

Query: 330 --ANRRIDILVEDR 341
              NRR  I++  +
Sbjct: 251 KMRNRRTQIIITPK 264


>gi|332702327|ref|ZP_08422415.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552476|gb|EGJ49520.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 282

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             + E   +L    + K   +     ++DL       L  L+ ++    + F   +   L
Sbjct: 57  GASPETENYLARHDERKTREIGPMNDIKDL-----ELLKPLLYEDARDDIRFAENK---L 108

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT------------D 273
           I I+   +  +F+   +        ++ ++  VL    +   + GHT            D
Sbjct: 109 IQIMSISSDILFEPGQTKLSERGRDLVGRMAPVLRELPQPFLLAGHTSTLRDELKTEYLD 168

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
             P        WR+SL RA + Y+ L+  GV  +R+ ++  FA +R +  ++       N
Sbjct: 169 YKPKDGEPNPGWRISLGRAMAMYRELLVHGVPVERM-RVEAFADYRPRFGNETAAERRMN 227

Query: 332 RRIDILVEDR 341
           RR+DI+++ R
Sbjct: 228 RRVDIVLDKR 237


>gi|153006367|ref|YP_001380692.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029940|gb|ABS27708.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 307

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 17/218 (7%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           Q    +      +    +   + D  ++   +    L     E+   +  K  L    ++
Sbjct: 51  QLREARGEAASATRGLHEARAALDDARTQRADLATRLGQAEVERRDLLAVKDELSQDVQQ 110

Query: 199 ISSTLSGLVA--DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIV 250
               ++ L    D + + +  E  +  + +S       +D  +  +FD   S    +   
Sbjct: 111 KEQEIAALRGEFDELQEKMKAEIEKGNVRLSQEKGRIKVDMVDEILFDVGDSSISAQGAE 170

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAYSAYQVL-MKSGV 304
           VL ++G VLA  ++  I + GHTD  P           NW LS  RA +  + L  ++GV
Sbjct: 171 VLSRVGAVLARMSDKHIQVSGHTDDLPISKRLVERFPTNWELSAARAITVVRFLEERAGV 230

Query: 305 SEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
              R+   +  + +       +    + NRRI+IL+  
Sbjct: 231 PGRRLVGAA-HSQYDPISTGKTAKERARNRRIEILLTP 267


>gi|312131420|ref|YP_003998760.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311907966|gb|ADQ18407.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 532

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGK 155
           DL+ +    +  +     +  +K++ Q +      + + + ++        +    E  +
Sbjct: 293 DLTQESTPNEGVLQATTLAEERKEEEQPIVPTKVAIISGKVTDLTTGKPIEVRIIYEDME 352

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D  +           E   + P  K   +  +    L  ++K I  T+ G   +   + +
Sbjct: 353 DGEELGVATSDPITGEYKIVLPYGKRYSIRPESDNLLG-VSKSIDLTIPGQYKEITGQDL 411

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
                + G  I++    N   F+ + +    E+ + L ++  +L  +  + I ++GHTD 
Sbjct: 412 ETAPIKAGTAITL----NNVFFEFAKATLEKESFLELDRLIALLVKNPNMAIEVQGHTDN 467

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
                    N RLS  RA +     ++ G++ DRI+  +GF   R   +++     + NR
Sbjct: 468 V---GSDNANMRLSQQRADAVKAYFVEKGIATDRITS-TGFGESRPVASNETTEGQAKNR 523

Query: 333 RIDILVEDR 341
           R++ ++  +
Sbjct: 524 RVEFVILRK 532


>gi|281426147|ref|ZP_06257060.1| OmpA family protein [Prevotella oris F0302]
 gi|299141901|ref|ZP_07035036.1| OmpA family protein [Prevotella oris C735]
 gi|281399723|gb|EFB30554.1| OmpA family protein [Prevotella oris F0302]
 gi|298576752|gb|EFI48623.1| OmpA family protein [Prevotella oris C735]
          Length = 284

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L+KI ++
Sbjct: 120 LTNNLTRSLSREEMKEVDIKVLKGVVYISLADNM---LYKSGSYEINDRAEETLRKIAKI 176

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           +       + I G+TD  P    +      R+NW LS  RA S  Q L    GV+  R++
Sbjct: 177 IMDYKDYDVLIEGNTDNVPVNTKSAAMKNIRNNWDLSALRASSVVQYLQDRFGVAPKRLT 236

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              G   +    ++D       NRR  I++  +
Sbjct: 237 A-GGRGEYNPVASNDTELGKQRNRRTQIIITPK 268


>gi|85704503|ref|ZP_01035605.1| hypothetical protein ROS217_05474 [Roseovarius sp. 217]
 gi|85670911|gb|EAQ25770.1| hypothetical protein ROS217_05474 [Roseovarius sp. 217]
          Length = 461

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             + G +   I +G+  E  +    I+ +    + MF   S    P     L ++   L 
Sbjct: 319 ERVKGFLEAEIREGI-VEVFQDQSTIT-VRLTGSGMFGSGSDQLQPAFDTPLSRVANALN 376

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
            +   I I GH+D  P ++     N  LSL RA S  + L    + +    K  G A   
Sbjct: 377 DAEGPIIIVGHSDNVPIKSSRFPTNMHLSLARAESVMRTLSTQ-IDDKARLKAEGHADKD 435

Query: 320 LKIASDP--MNSANRRIDILVEDR 341
               +      + NRRI++++  +
Sbjct: 436 PIADNGTSEGRAKNRRIEVVLIRK 459


>gi|312130013|ref|YP_003997353.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906559|gb|ADQ17000.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 622

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +  +   FD  S+   PE+ + L+K+  +L  + +  + I GHTD        + N  LS
Sbjct: 514 ETLDNIFFDTGSAAIRPESEIELKKVVTLLKENPDLKVEISGHTDDV---GNDKANMNLS 570

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           + RA +  + L   G+   R+    G+   + K+ +D       NRRI++ V 
Sbjct: 571 IQRANAVVEYLKGKGIHTQRLVA-KGYGESQPKVKNDSDKNRQLNRRIELKVL 622


>gi|330899174|gb|EGH30593.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 271

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASTDFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             +DN +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQDNLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|114769425|ref|ZP_01447051.1| flagellar motor protein [alpha proteobacterium HTCC2255]
 gi|114550342|gb|EAU53223.1| flagellar motor protein [alpha proteobacterium HTCC2255]
          Length = 638

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 106/321 (33%), Gaps = 24/321 (7%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
           K+  AD  T L    L +       +DT   +           +  +K   + +      
Sbjct: 319 KLKNAD--TELTVMSLALEAERKEAEDTLTKLAAANAIEKSLTIDLNKSFTEVERQAALI 376

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD--- 150
           +Q  I L+ ++ ++ ++         Q  Q +   N +  L +  +    K  +      
Sbjct: 377 AQANILLNQEKTLSSSAQRKLALLNTQTSQLRDQLNQLQGLLDESKEADSKAQIQLKMLG 436

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           +     L +    ++ +  E+        K      K K RL D AK +    S      
Sbjct: 437 TNLNLALARVASEQRKLAAEQEKVAAEQRKIAEFESKEKLRLADEAKDLKKFRSEF---- 492

Query: 211 IVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-- 266
             K       + G+ I        +  +F   S+         + K+ +++    + I  
Sbjct: 493 FGKLREVMEGKEGVRIVGDRFVFSSEVLFSVGSAYLGSRGKTEISKVADIINQIADEIPT 552

Query: 267 ------SIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                  + GHTD  PF    N  +DNW LS  RA S  + LM            +GF  
Sbjct: 553 GIDWILRVDGHTDRIPFSGFGNDYKDNWELSQARALSVVRYLMDDLDIPANRLAANGFGE 612

Query: 318 HRLKIASDPMNS--ANRRIDI 336
            +     D   +   NRRI++
Sbjct: 613 FQPIDNRDTPEAYKTNRRIEL 633


>gi|330980720|gb|EGH78823.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 271

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             +DN +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQDNLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|222106979|ref|YP_002547770.1| OmpA-type porin [Agrobacterium vitis S4]
 gi|221738158|gb|ACM39054.1| OmpA-type porin [Agrobacterium vitis S4]
          Length = 511

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ + ++ L  +   K V        + + I    N+ +FD  S+    +   +LQ+IG 
Sbjct: 331 RLKNLITFLQPEVEKKLVSLSDANGRLRVRI---NNSGLFDTGSADVKGQFRDLLQRIGG 387

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            LA       + G+TD  P + +    NW LS  RA +  ++L      +  ++   G A
Sbjct: 388 ALAAEKFRAVVIGYTDNVPIKTVQFPSNWHLSEARAKAVGEILSSFTGPDAILT--EGRA 445

Query: 317 HHRLKIASDPMNSA--NRRIDILVED 340
                  +D       NRR +ILV  
Sbjct: 446 DSDPIAGNDTPEGREMNRRTEILVLT 471


>gi|146278244|ref|YP_001168403.1| hypothetical protein Rsph17025_2208 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556485|gb|ABP71098.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 525

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
              +   ++    +S+  + N  L  ++ E+    + ++  +   +  +  L    ++  
Sbjct: 322 AAQERDEENRVQLQSLGTQLNSALAQVAAEQKRRAELEEAERLRLEARNKDLERFRSEFF 381

Query: 212 VKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS------- 262
            +       R G+ I        +  +F+  S+    E    +  +   L+         
Sbjct: 382 GQLRQVLAGREGVRIVGDRFVFSSEVLFEPGSAQLASEGRTQISGVTRTLSEIREQIPEG 441

Query: 263 -TEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
              +I + GHTD  P       RDNW LS  RA S  + + ++ G    R++  +GF  +
Sbjct: 442 IDWIIRVDGHTDDVPLSGFGAFRDNWELSSARALSVVRYMQQTLGFPPSRLAA-TGFGEY 500

Query: 319 RLKI--ASDPMNSANRRIDILVEDR 341
           R  +  +S    + NRRI++ + +R
Sbjct: 501 RPVVEGSSPEARAQNRRIELKLTER 525


>gi|288800219|ref|ZP_06405677.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332432|gb|EFC70912.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 283

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +S+ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 123 LSNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 179

Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS  RA S  Q L    GV+  R++   G 
Sbjct: 180 ITDYKDYDVLIEGNTDNVPIARENIRNNWDLSCLRASSVVQYLQTHYGVNPKRLTA-GGR 238

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341
             +     ++       NRR  I++  +
Sbjct: 239 GEYNPIANNNTELGKQRNRRTQIIITPK 266


>gi|119357472|ref|YP_912116.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354821|gb|ABL65692.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 229

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D  V+G   E    GI + + D     +F+  SS     +   ++K+  +LA   +  + 
Sbjct: 87  DRNVEGAEVERIGEGIRV-VFDS--GILFNTGSSAITSTSRYNIEKLAGILAKYDDTNLI 143

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+         N  LS +RA S   +L   GVS  R+S I G+   R   +++  
Sbjct: 144 IEGHTDSV---GSDSMNQTLSENRAQSVANLLKAYGVSSSRLSAI-GYGESRPIASNETE 199

Query: 328 NSA--NRRIDILV-----EDRQG 343
           +    NRR+++L+       RQ 
Sbjct: 200 SGRRLNRRVEVLITANNELKRQA 222


>gi|229592075|ref|YP_002874194.1| hypothetical protein PFLU4673 [Pseudomonas fluorescens SBW25]
 gi|229363941|emb|CAY51462.1| putative outer membrane protein [Pseudomonas fluorescens SBW25]
          Length = 271

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E+++N+E    L    +   LA++        +K IS    G   +  +  +    T  
Sbjct: 97  TEQALNEERGAKLELERQRLQLALRE-------SKLISVQQQGKWLEEQIASLATTQTDR 149

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +         + KI + L  + + +  I G+ D +      
Sbjct: 150 GLVMTLGD----VLFDTGEAELKNSANRTVLKIVQFLQLNPKRVVRIEGYADNT---GGE 202

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           R+N +LS DRA S   VL+  G+ E RI ++ G+         AS+   + NRR++I+  
Sbjct: 203 RENLKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFS 261

Query: 340 DRQG 343
           D +G
Sbjct: 262 DAKG 265


>gi|241663267|ref|YP_002981627.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D]
 gi|240865294|gb|ACS62955.1| OmpA/MotB domain protein [Ralstonia pickettii 12D]
          Length = 431

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 11/264 (4%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           I      P+R      + + +      +V    G   +              +   Q   
Sbjct: 163 IPSAATTPQRRHVTIANSAAEHQRIHVAVSNPSGGAVEPSDVLITVGMPVQEAAPSQELS 222

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            + S                L     ++        S+   L  +  KR + L  +I+  
Sbjct: 223 PQRSWRLIVIAVVVTALVIGLAWVTYRQHLDNQALASQVSALEAQVAKRQEPLEDRIARA 282

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L+     +      F  +  G  I I+       F   S+   P     L+++  VL  +
Sbjct: 283 LTSETGAS-----QFGLSTEGDRIYIVFSSGMG-FAAGSADITPMLARQLERLAGVL-TT 335

Query: 263 TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
              ++I GHTD SP  R     N  LS  RA +  + L   G+SE R+    G       
Sbjct: 336 DGKVTIVGHTDDSPGARGRTETNLALSAARAMAVGRNLQAHGLSETRL-STMGRGAKEPV 394

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
               +    + NRR++I+++ ++ 
Sbjct: 395 GDNKTAEGRALNRRVEIVLDRQRA 418


>gi|262197216|ref|YP_003268425.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262080563|gb|ACY16532.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 374

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 96/274 (35%), Gaps = 20/274 (7%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P    + +   GIFD+++  + + ++K     DE    +  + + G  +          +
Sbjct: 118 PEVVAVDSDGDGIFDDRDACKGAPEDKDGFE-DEDGCPDLDNDQDGIVDASDACPLEPED 176

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              L +              ++         + +     E+    P    +     +   
Sbjct: 177 KDGLDDEDGCPEEDRDGDMIADNKDQCPDEPEDKDGFADEDG--CPDCDNDGDGVPECPV 234

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +     K + T  G    N+VK      T   I I     + T  F+   +   P +  
Sbjct: 235 VVDQCPSKAAKTPDGCPVYNLVK-----VTSKKIEI-----KQTIYFETGKNTIKPVSFA 284

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L ++  VL  + E  + I GHTD+   R  A  N  LS  RA S    L+  GV  DR+
Sbjct: 285 LLNEVATVLTDNPEIEVRIEGHTDS---RGSAEFNMELSQSRAESVRSFLIDKGVDGDRL 341

Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
               G+        ++     + NRR++ ++  R
Sbjct: 342 EA-KGYGESAPIANNNTRAGQAQNRRVEFVIVSR 374


>gi|221201698|ref|ZP_03574736.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221207227|ref|ZP_03580237.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221172815|gb|EEE05252.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221178514|gb|EEE10923.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 310

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 94/289 (32%), Gaps = 22/289 (7%)

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
                 N  G  +     G       P  +       +    + + +             
Sbjct: 22  GAAYAQNAGGATVTPVGNGTVAASALPANAGAGSASAAASGTLVRGTAGTLAPPPANATP 81

Query: 124 YQRLENNIFYLSNSQQS------EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            Q +         ++ +      +    +   D  +  D+    +   ++ K     L  
Sbjct: 82  GQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQIEVGDVATPPNWSANVQKLLGAQLKQ 141

Query: 178 LSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISII 229
           +SK ++     +  +      +   ++I+S ++  +     I  G+    +  G+L   +
Sbjct: 142 ISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIRNGLRVSASEQGLLDQTL 201

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
             R    F+  S+   P+   +L ++   LA      + I GHTD          N  LS
Sbjct: 202 ANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGHTDN---SGNRTSNIALS 257

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             RA +    L+  G+S  +++  +G    +    +D     + NRRI+
Sbjct: 258 QARADAVKGYLITKGISPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 305


>gi|282877998|ref|ZP_06286806.1| OmpA family protein [Prevotella buccalis ATCC 35310]
 gi|281299833|gb|EFA92194.1| OmpA family protein [Prevotella buccalis ATCC 35310]
          Length = 288

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 121 LTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 177

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           +       + + G+TD  P    +      R+NW LS  RA S  Q L    GV   R++
Sbjct: 178 IMDYKDYDVLVEGNTDNVPVNQNSPLMKNIRNNWDLSTLRASSVVQFLQSHYGVDPKRMT 237

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              G   +    +++       NRR  I++  +
Sbjct: 238 A-GGRGEYNPLTSNNTELGKQRNRRTQIIITPK 269


>gi|118589219|ref|ZP_01546625.1| hypothetical protein SIAM614_06738 [Stappia aggregata IAM 12614]
 gi|118437919|gb|EAV44554.1| hypothetical protein SIAM614_06738 [Stappia aggregata IAM 12614]
          Length = 360

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 95/268 (35%), Gaps = 15/268 (5%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKN-----SVDLKIGSTNQKKQYQRLENNIFYLSN- 136
            F+    PE     +ID S    +         +D K+      K +Q      +  ++ 
Sbjct: 98  FFETFEFPEAVITTQIDASALADLPTVKRKIIPLDFKLDLHGVSKSFQSDVAVTYLSADL 157

Query: 137 -SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +  S    +    D   G  + K  +    +              +  A   +    D 
Sbjct: 158 VAVSSTAPVSVAASDFNLGGGIKKLEEAAGVVIVPSATVSFDFVFARKAAEPAQSVSTDA 217

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A K++++ S        +G L     TG    I+ + +   F   SS   P +  +L  +
Sbjct: 218 APKVTASQSAASTALEPEGNLDSEACTG-RFEILSRTDNIYFPSGSSQLDPRSEPLLNSL 276

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +++      VI + GHTD+         N  LS  RA +  Q L+   + E RI  + G
Sbjct: 277 VDIILRCPGLVIEVGGHTDSD---GSDTSNQLLSERRAGAVKQYLVSKSIPESRIKSV-G 332

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
           +   R   A+   +    NRRI+ +V +
Sbjct: 333 YGESRPVAANTSADGKRRNRRIEFVVVE 360


>gi|330998481|ref|ZP_08322305.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568587|gb|EGG50392.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 292

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 16/213 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198
              + +          L  S D     N + N  +  L  E   + K  K+L +   K  
Sbjct: 64  AEAQKANDELKASYAALQGSLDKSIQQNSQGNVNISKLVDEINASNKFIKQLVEAKDKSD 123

Query: 199 -----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L 
Sbjct: 124 SLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLADNM---LYKSGSYEISERAGETLS 180

Query: 254 KIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310
           KI +++       + I G+TD  P      R+NW LS  RA S  Q L    GV   R++
Sbjct: 181 KIAKIIMDYKEYEVLIEGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLT 240

Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
             +G   +    ++D       NRR  I++  +
Sbjct: 241 A-AGRGEYNPVASNDTPEGKMRNRRTQIIITPK 272


>gi|121596298|ref|YP_988194.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|222112527|ref|YP_002554791.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|120608378|gb|ABM44118.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
 gi|221731971|gb|ACM34791.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 216

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           ++ +      + A     GV    T    L   +D  +   F  + S   P    +L + 
Sbjct: 70  SQHMERQKQDMQAATQGTGVTVTQTPDNQL--KLDIPSDISFATNRSDIQPNFRPILDRF 127

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            E L ++    + I GHTD++    I      LSLDRA S    L   GV+ +RI  + G
Sbjct: 128 AEGLRNNPNTEVRIVGHTDSTGSDAINNP---LSLDRAESTRNYLTARGVNGNRIH-VEG 183

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343
                   ++D     + NRR++I V +RQG
Sbjct: 184 RGSREPVASNDTSDGRARNRRVEIYVGERQG 214


>gi|158604954|gb|EAT98065.3| OmpA/MotB [Campylobacter concisus 13826]
          Length = 259

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 19/208 (9%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ E    SL       +   +     +     E+   P    +K      +  +   
Sbjct: 42  DAKKMEAAVGSLAGALSVLEGGARPDSQVEKETDPESRRTPKPKAQKGA----QNEVTST 97

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            KKI+  L+   A      +  E +  G ++ +       +FDK S+     +  + L++
Sbjct: 98  VKKINELLTASGAPE----ITMEESEDGFIVRL---PAAMLFDKDSAEISGEDAKLFLKR 150

Query: 255 IGEVLAHSTEVIS--IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           IG ++A     +   I G+TD +     +I ++NW+LS  RA S  + L+  GV ++R+ 
Sbjct: 151 IGMIIAKMPNEVKTDIIGYTDNTNPSKDSIYKNNWQLSTARALSVLEELVSDGVPQERLI 210

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDI 336
             SG A      ++  D   + N R++I
Sbjct: 211 -TSGRASFDPIASNSTDEGRAKNNRVEI 237


>gi|162450796|ref|YP_001613163.1| hypothetical protein sce2524 [Sorangium cellulosum 'So ce 56']
 gi|161161378|emb|CAN92683.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 561

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 26/257 (10%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P R  Q     + D        D+ +  T+ +       ++       +  +   +   
Sbjct: 307 SPGRRFQAVPPRAADTDKDGLPDDIDLCPTDPEDGKPPNADDGCPALPDRDGDGIPDISD 366

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
           +  ++ +D  K  D +     + +    P +K+       +              S    
Sbjct: 367 KCPDQPEDFDKINDADGCPEDDADEDSIPDAKDACPKEPGQP-------------SPEPT 413

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--I 266
            N     +   T +   I I+       F   S+  LP +  +L ++  +L  + E+  +
Sbjct: 414 KNGCPQFIRRITGS-SEIQIL---KQVQFATGSARILPNSYSILDEVVRLLKVNPEITLV 469

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325
           +I GHTD    R   + N +LS DRA+S    L  + G+   R++  +GF   R    ++
Sbjct: 470 AIEGHTDN---RGSDQLNEKLSNDRAHSVRTYLIERGGIDPARLTA-AGFGPKRPIDDNN 525

Query: 326 PMNSA--NRRIDILVED 340
                  NRR++  + +
Sbjct: 526 TEAGRQKNRRVEFHIRE 542


>gi|28869391|ref|NP_792010.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968194|ref|ZP_03396339.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301383801|ref|ZP_07232219.1| ompA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060757|ref|ZP_07252298.1| ompA family protein [Pseudomonas syringae pv. tomato K40]
 gi|302131856|ref|ZP_07257846.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852632|gb|AAO55705.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927174|gb|EEB60724.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|331018607|gb|EGH98663.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 271

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 100/244 (40%), Gaps = 12/244 (4%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           + + + S D +    +        ++ I    +  ++E   + L   ++       S+  
Sbjct: 30  QALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSSRY 89

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T  
Sbjct: 90  SEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR 149

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++      
Sbjct: 150 GLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---GDR 202

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            DN  LS DRA +   VLM  GV + RI ++ G+       A+  +   + NRR++I+  
Sbjct: 203 EDNLTLSKDRAQAVADVLMDLGVDDKRI-QVEGYGQQFPVDANASERGRAQNRRVEIVFS 261

Query: 340 DRQG 343
           D +G
Sbjct: 262 DEKG 265


>gi|310819615|ref|YP_003951973.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392687|gb|ADO70146.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 593

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 39/271 (14%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           +   GI D  +    S               + +             +R +       + 
Sbjct: 354 SDGDGILDPDDK-CPSVPGVARFQGCPDTDGDGLVDPDDKCPSVPGVERFQGCPDTDGDG 412

Query: 138 QQSEHCK-NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +    K  S+    E      K TD ++  +  +N    P          ++ +L ++ 
Sbjct: 413 IEDASDKCPSVPGIHELKGCPPKDTDKDQLPDHRDNCPNEPGPAANQGCPVQQPQLVEIQ 472

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +                            I I D      FD   +  LP +  +L ++ 
Sbjct: 473 RD--------------------------RIEIKD---KVYFDSDKATILPRSNKLLDQVA 503

Query: 257 EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            ++    E   I I GHTD    R     N  LS  RA      L+  GV   R+    G
Sbjct: 504 RIIIEHPELEKIWIEGHTDE---RGSQDYNRELSQKRAEEVRDYLVTRGVPIGRLVP-KG 559

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           +       ++D     +ANRR++ L   R+G
Sbjct: 560 YGRQYPVASNDTVEGRAANRRVEFLTTPREG 590


>gi|153002898|ref|YP_001377223.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026471|gb|ABS24239.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 510

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           ++ R    FD   +   PE+  +L +I +VLA   E   + I GH+D+      A  N R
Sbjct: 397 VELREKVQFDTGKATIKPESAGLLDEIAKVLAEHAEITRVVIEGHSDS---SGGAALNKR 453

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS  RA +  + L++ G++++R+S   GF   R   ++D      ANRR++I +
Sbjct: 454 LSQARADAVLKALVERGIAKERLSA-KGFGPSRPIASNDTPEGREANRRVEISI 506


>gi|254469405|ref|ZP_05082810.1| OmpA family protein [Pseudovibrio sp. JE062]
 gi|211961240|gb|EEA96435.1| OmpA family protein [Pseudovibrio sp. JE062]
          Length = 473

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 201 STLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
             +S  +A  I +G++      G ++I +     + MF  +        I V+ ++ E L
Sbjct: 326 QQISAFLATEIQQGLVVVMNANGNVVIRLT---GSGMFATARDTLTARFIPVVNRVAEAL 382

Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH 317
                 I++ G++D  P RN   R+N  LS  RA +   ++      ++R+  I  G A 
Sbjct: 383 NTRPGRINVVGYSDNIPIRNAQFRNNVALSKARAQTVADLIKVRLTDKNRVRAIGRGSAD 442

Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343
                A+    + NRRIDI +    G
Sbjct: 443 PIASNATAEGRAQNRRIDITLIPSTG 468


>gi|325473514|gb|EGC76707.1| OmpA family protein [Treponema denticola F0402]
          Length = 422

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            ++ +       +   V D  ++    E T  G+ ISI        F  +S+I       
Sbjct: 276 EVKKIDTAAEEEIKKSVEDLNLENTTIEKTDEGLTISI----ENIQFLPNSAILRESEKE 331

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L+KIGE+L    +    I GHT          +  +LS +RA +    L+  GV +   
Sbjct: 332 KLKKIGEILLKFPDREFLISGHT---ALAGTEEERQKLSEERAAAVANYLIDLGVQKREH 388

Query: 310 SKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341
               GF   R   A++ P N + NRR++I + D+
Sbjct: 389 VYTRGFGARRPVAANNSPENMAKNRRVEITILDK 422


>gi|157736296|ref|YP_001488979.1| hypothetical protein Abu_0025 [Arcobacter butzleri RM4018]
 gi|157698150|gb|ABV66310.1| hypothetical protein, OmpA domain [Arcobacter butzleri RM4018]
          Length = 316

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I++  +    + ++K    +     +LI+ I +     F++ SSIP  ++   +++I ++
Sbjct: 176 INNQQNENSNEEVIKNETLKLPEIQLLINNILKDRKISFERKSSIPTEQSQNTIKEIAKI 235

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +    + + GHTD+   R  A  N ++S DRA S   +L+ SGV+E RI  I G+  
Sbjct: 236 LNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSVKNILVNSGVNETRIKAI-GYGE 291

Query: 318 HRLKIASDPM--NSANRRIDILV 338
                  D    +  NRR++ ++
Sbjct: 292 EFPIAKDDENGLSEINRRVEFII 314


>gi|257485486|ref|ZP_05639527.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010666|gb|EGH90722.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 271

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGRAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|310817592|ref|YP_003949950.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390664|gb|ADO68123.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 640

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286
           ID + T  FD   +     +  +L ++ ++L    E+  I++ GHTD          N R
Sbjct: 523 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTDNV---GKPEANLR 579

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           LS  RA +    L + GV+  R+    G+   R    +      + NRR+D +   R+G
Sbjct: 580 LSQQRAEAVRDYLARKGVAPQRLEA-KGYGQERPIAPNTTSKGRATNRRVDFITTTREG 637


>gi|116249130|ref|YP_764971.1| putative outer membrane porin involved in nitrogen fixation
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|16326461|gb|AAL17783.1|AF361470_3 ImpK [Rhizobium leguminosarum bv. trifolii]
 gi|115253780|emb|CAK12174.1| putative outer membrane porin involved in nitrogen fixation
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 510

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ + L+ L  +   K V    +   +L+ I    N+ +F   S+    +   +LQ+IG 
Sbjct: 337 RLDNLLAFLQPEVEKKLVTLSDSNGRLLVRIS---NSGLFATGSAEVSQKFHDLLQRIGG 393

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            LA       + G+TD  P R +    NW LS  RA +  ++L         ++   G A
Sbjct: 394 ALAAENFRAVVVGYTDNVPIRTVQFPSNWHLSEARAKAVGEILSSFTGPGAILT--EGRA 451

Query: 317 HHRLKIASDPMNSA--NRRIDILVED 340
                 A+D       NRR +ILV  
Sbjct: 452 DTDPIAANDTPEGREMNRRTEILVLT 477


>gi|114332359|ref|YP_748581.1| OmpA/MotB domain-containing protein [Nitrosomonas eutropha C91]
 gi|114309373|gb|ABI60616.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91]
          Length = 220

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248
           KR+++   ++ +  +G        GV+   T    ++++I    +   FD  S+   P  
Sbjct: 73  KRMEEQKIQMENATAGT-------GVMVSQTADNRLMLNI---PSDISFDTGSAQIKPGF 122

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L      L ++    ++I GHTD +   + A +N  LS++RA S  + L   GV   
Sbjct: 123 RPILDSFATSLLNNPGTHVTIVGHTDNT--GSDAVNN-PLSVNRAASTREYLAGRGVPFQ 179

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           RI +I G   ++   +++     + NRR++I V + +G
Sbjct: 180 RI-QIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRG 216


>gi|330503720|ref|YP_004380589.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328918006|gb|AEB58837.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 262

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 80/240 (33%), Gaps = 13/240 (5%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
               + D +   T  +   Q        L  ++ +         D   G+ L    D + 
Sbjct: 26  TPTGAADARHRLTQLQNDPQLASRIPVSLKAAETAVLAAEQPRTDEVVGQHLVVMADRKV 85

Query: 166 SINKEEN-YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTG 223
            I +           + ++   +   RL    ++        V     + G+  E T  G
Sbjct: 86  EIARARALERFYEDQRRQLGEQRESARLDSRTREADQAQQRNVDLQRQIDGLNAEETERG 145

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282
           +L+++ D     +F    +         L  + + L    E  ++I GHTD         
Sbjct: 146 LLVTLGDL----LFASGRAELNGNANHNLATLTDFLNRHPERTVTIEGHTDNV---GSES 198

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            N+ LS  RA S    L   G++  R+   SG         +D       NRR++I++ +
Sbjct: 199 ANFGLSQRRADSVKSHLQSQGIAASRLLA-SGMGEGSPVAGNDSAEGRQLNRRVEIIISN 257


>gi|325105244|ref|YP_004274898.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974092|gb|ADY53076.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 285

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   ++ V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 127 LTNNLTRSLSREELRDVDIQVLKGVVYISLADNM---LYKSGSYEISDRADQTLSKIAKI 183

Query: 259 LAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS+ RA S  Q L  K GV   R++   G 
Sbjct: 184 IKDYKNYGVLIEGNTDNVPISQTNIRNNWDLSVLRASSVVQSLQTKYGVDPKRLTA-GGR 242

Query: 316 AHHRLKIASDPMN--SANRRIDILVED 340
             +     +      S NRR  I++  
Sbjct: 243 GEYNPVAPNSTEEGKSKNRRTQIIITP 269


>gi|167034765|ref|YP_001669996.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861253|gb|ABY99660.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 270

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 20/192 (10%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +   +   L  +  ++    L     +  L   +   +Q   K + S ++ L +      
Sbjct: 90  EIASEHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQGKWVESQIAALAS------ 143

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTD 273
              E T  G+++++ D     +FD  S+         + K+ + L  +   +  I G+TD
Sbjct: 144 ---EQTDRGLVMTLGD----VLFDTGSADLKNSASRTVLKLVQFLQLNPRRVVRIEGYTD 196

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331
           ++    +A DN +LS DRA S   +L+  G+ E R+ ++ G+         AS+   + N
Sbjct: 197 ST---GLAEDNLKLSRDRAQSVADMLVDLGIDEKRL-QVEGYGDQYPIEANASERGRAQN 252

Query: 332 RRIDILVEDRQG 343
           RR++I+  D +G
Sbjct: 253 RRVEIVFSDDKG 264


>gi|33595424|ref|NP_883067.1| hypothetical protein BPP0729 [Bordetella parapertussis 12822]
 gi|33599804|ref|NP_887364.1| hypothetical protein BB0815 [Bordetella bronchiseptica RB50]
 gi|33565502|emb|CAE40138.1| putative outer membrane protein [Bordetella parapertussis]
 gi|33567401|emb|CAE31314.1| putative outer membrane protein [Bordetella bronchiseptica RB50]
          Length = 426

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285
           S++  R   +F+  +         VL ++ E L  +   I +RG+TD  P R      NW
Sbjct: 296 SVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNW 355

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LS  RA +   V+        R+ +  G         +D     S NRR++I V 
Sbjct: 356 HLSQARAEAVKAVIDARLGQAGRV-RAEGRGEADPLAPNDTPAGRSVNRRVEITVM 410


>gi|88811500|ref|ZP_01126755.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231]
 gi|88791389|gb|EAR22501.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295
           F   S+        VL K+   L      + + GHTD  P R++  +DN+ LS  RA +A
Sbjct: 324 FRSGSAELSAAYAPVLDKVAGALKQVPGRVLVVGHTDDVPIRSLRFKDNYELSRQRALNA 383

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDIL 337
            + L +      R+    G    +     + +    + NRRI+I+
Sbjct: 384 AERLKERLDDPGRV-SYLGVGPDQPRYRPVDTPENRARNRRIEII 427


>gi|308126352|ref|ZP_07663724.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
 gi|308109323|gb|EFO46863.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037]
          Length = 182

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 12/159 (7%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           +  + ++ K+  A      + G+WK+ +ADFM  LMA FLV+W++   D + +KAI  + 
Sbjct: 2   QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61

Query: 70  NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +         S  +FD+   NP + S S + IDL+ D  +        + S+  +     
Sbjct: 62  H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSYFQGDGDG 112

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            E N          E          E  +   ++   ++
Sbjct: 113 PEINSLVPGTFDTQEQLAALAKVIEEMTRADQRARKRQR 151


>gi|187918154|ref|YP_001883717.1| flagellar motor protein MotB [Borrelia hermsii DAH]
 gi|119861002|gb|AAX16797.1| chemotaxis MotB protein [Borrelia hermsii DAH]
          Length = 262

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 20/176 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           S   + + ++ K+   ++K  + ++   V       V+      G+++S++       FD
Sbjct: 81  SFMSLPSTEKNKQASQVSK--NKSIIEFVEKIQSNKVIVREHERGVVVSLLAD---AFFD 135

Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292
            +S+     +    +QKI   +           I GHTD        I + NW LS  RA
Sbjct: 136 SASAEVKLDDNRETIQKIASFIGFLDNQSYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195

Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +  + ++     + +I        +SGFA  +     D     + NRRIDIL+  
Sbjct: 196 VNMLEQILNY-TDQSKIQSIESKFEVSGFAGSKPVATDDTPEGRAYNRRIDILITS 250



 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73
          ++ +            + + Y D +T+L+ FF+ M+ +N     ++  K +   F   G
Sbjct: 4  LRVRKKRSKCEEGAPDYMLTYGDMVTLLLVFFVTMFSLNDIILKENVLKIMSASFTGSG 62


>gi|78049429|ref|YP_365604.1| hypothetical protein XCV3873 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325928969|ref|ZP_08190130.1| flagellar motor protein [Xanthomonas perforans 91-118]
 gi|78037859|emb|CAJ25604.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325540658|gb|EGD12239.1| flagellar motor protein [Xanthomonas perforans 91-118]
          Length = 223

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDAEVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +       L    E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLATPLTHYLRARDEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|315186462|gb|EFU20222.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 395

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +K+   +   + D  +     ET+  G+ I +        F   S++ LPE    L+KI 
Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSAVLLPEEQEKLRKIA 310

Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           ++L+   E  + + GHT              LS++RA +    LMK GV       I G+
Sbjct: 311 QILSRYPERDLLVEGHT---ALAGTPEGRLALSIERAKAVADFLMKLGVRRPEQIVIQGY 367

Query: 316 AHHRLK--IASDPMNSANRRIDILVED 340
              R     A++   S NRR++I + +
Sbjct: 368 GATRPIADNATEAGRSRNRRVEITILE 394


>gi|304383212|ref|ZP_07365685.1| OmpA family protein [Prevotella marshii DSM 16973]
 gi|304335683|gb|EFM01940.1| OmpA family protein [Prevotella marshii DSM 16973]
          Length = 278

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 120 LTNNLTRSLSKEEMKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 176

Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS  RA S  Q L  + GV   R++   G 
Sbjct: 177 ITDYKDYDVLIEGNTDNVPISRENIRNNWDLSCLRASSVVQYLQTRYGVDPKRMTA-GGR 235

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341
             +     +        NRR  I++  +
Sbjct: 236 GEYNPLSDNSTALGKQRNRRTQIIITPK 263


>gi|203287740|ref|YP_002222755.1| flagellar motor rotation protein B [Borrelia recurrentis A1]
 gi|201084960|gb|ACH94534.1| flagellar motor rotation protein B [Borrelia recurrentis A1]
          Length = 262

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 20/176 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           S   + +  + K+    +K  + ++   V       V+      G+++S++       FD
Sbjct: 81  SFMSLPSTAKNKQASQASK--NKSIIEFVEKIQSNKVIVRRHERGVVVSLLAD---AFFD 135

Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292
            +S+     +   V+QKI   +           I GHTD        I + NW LS  RA
Sbjct: 136 SASAEVKLDDNRDVIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195

Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +  + ++       +I        +SGFA  R     D     + NRRIDIL+  
Sbjct: 196 VNMLEQILNY-TDHSKIESIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPF 72
          I   KK            + + Y D +T+L+ FF+ M+ +N     ++  K +   F   
Sbjct: 2  IFKTKKKRSKCEDGGAPEYMVTYGDMVTLLLVFFVTMFSLNDVIMKENVLKIMSASFTGS 61

Query: 73 G 73
          G
Sbjct: 62 G 62


>gi|83859947|ref|ZP_00953467.1| flagellar motor protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852306|gb|EAP90160.1| flagellar motor protein [Oceanicaulis alexandrii HTCC2633]
          Length = 338

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 18/319 (5%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
           F+  L    LV+  + A     + A+ Q      + L   +  +         +      
Sbjct: 21  FVDALATLLLVIVFLLAVFTAGQFALSQALTGRDEQLAELNGRLATLAEELNLAQSENER 80

Query: 100 LSID-EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK--GKD 156
           LS+    +T+ +  L   +     Q   L+  +    +S   E   N   + +       
Sbjct: 81  LSLRVSTLTQENGALAETNAGLTSQIAGLQEGLAAARSSLAEEEALNEEAQATVALLNNQ 140

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +    +    +N+  N      ++ +   +   +RL        + L+   ++   + + 
Sbjct: 141 MAALREELARLNEALNASEAREAELEAEVVNLGRRLNAALASEVARLARYRSEFFGRLIE 200

Query: 217 FETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVI 266
               R+G+ +           +F   S+    E    L  I + +             V+
Sbjct: 201 VLGDRSGVRVVGDRFVFETDVLFASGSAELSEEGRRSLAPIADAIIQLTDEIPDDLDWVL 260

Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-- 322
            + GHTD  P    A    NW LS  R+ S        GV   R+   +GF  H      
Sbjct: 261 RVDGHTDRVPLGPNAPFESNWELSTARSLSVIAYFESRGVPPRRLLA-AGFGEHYPIAEG 319

Query: 323 ASDPMNSANRRIDILVEDR 341
            +    + NRRI++ +  R
Sbjct: 320 RTQEAYARNRRIELKLTSR 338


>gi|327402922|ref|YP_004343760.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327318430|gb|AEA42922.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 321

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 106/286 (37%), Gaps = 13/286 (4%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
           + +K   +  N +  + +       D Q   ++  ++ I L  D     +++       +
Sbjct: 28  EREKVCSEELNKYKASSIENEGKAKDLQVMVDQFRKDIISLKKDTLELGSNLRFLQTQYD 87

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE---ENYFLP 176
                  +          +  +   N       K ++L +  D  K++  E   +   L 
Sbjct: 88  LMVSQNEVYEQKLDQMRMKGQKESANYQADIDSKNQELQRKEDALKTLESELIAKEKLLI 147

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
              +      +  KR  D  K++ + +S  +     KG+        I +S+       +
Sbjct: 148 EREERVTELEEMIKRKDDAMKQLKTRVSAALKGFENKGLTVVEKNGKIYVSL---EAKLL 204

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293
           F   S+    E    L  + +VL       I + GHTD     + A  + NW LS+ R+ 
Sbjct: 205 FASGSTTVEAEGKKALVDLAKVLENEKDLEIIVEGHTDTDKLASTAHPKSNWELSVLRST 264

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  ++++ +  ++  ++   +G   +    A D   + NRRI++++
Sbjct: 265 AVVEIMIGNSKMNPMQLMA-AGRGEYHPVDAKD--KAKNRRIEVII 307


>gi|317505336|ref|ZP_07963264.1| OmpA family protein [Prevotella salivae DSM 15606]
 gi|315663550|gb|EFV03289.1| OmpA family protein [Prevotella salivae DSM 15606]
          Length = 284

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V     +  + IS+ D     ++   S          L KI ++
Sbjct: 120 LTNNLTRSLSREEMKEVDVRVLKGVVYISLADNM---LYRSGSYEINDRAEETLGKIAKI 176

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           +       + I G+TD  P    +      R+NW LS  RA S  Q L    GVS  R++
Sbjct: 177 IMDYKDYDVLIEGNTDNVPVNTKSAAMKNIRNNWDLSALRASSVVQYLQDHFGVSPKRLT 236

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              G   +     +D       NRR  I++  +
Sbjct: 237 A-GGRGEYNPVATNDTELGKQRNRRTQIIITPK 268


>gi|188532760|ref|YP_001906557.1| hypothetical protein ETA_06130 [Erwinia tasmaniensis Et1/99]
 gi|188027802|emb|CAO95659.1| OmpA family protein [Erwinia tasmaniensis Et1/99]
          Length = 413

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           ++  L          S++  +   +F  +S+        VL ++   + + +  I + G+
Sbjct: 268 IEQGLVAVRDEADR-SVVTLKGDGLFTSASTEVRGRYAEVLDRVAAAMNNVSGRILVVGY 326

Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328
           +D  P R+     N+ LSL RA S    L +      R+    G         ++     
Sbjct: 327 SDNVPIRSARFASNYELSLARAQSVSGQLRQHLSQPQRVKA-EGRGESSPLAPNNSAENR 385

Query: 329 SANRRIDILVE 339
           + NRR++I + 
Sbjct: 386 ARNRRVEITLL 396


>gi|115373816|ref|ZP_01461109.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369215|gb|EAU68157.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 669

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286
           ID + T  FD   +     +  +L ++ ++L    E+  I++ GHTD          N R
Sbjct: 552 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTDNV---GKPEANLR 608

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           LS  RA +    L + GV+  R+    G+   R    +      + NRR+D +   R+G
Sbjct: 609 LSQQRAEAVRDYLARKGVAPQRLEA-KGYGQERPIAPNTTSKGRATNRRVDFITTTREG 666


>gi|58866398|gb|AAW82963.1| Omp52 [Leptospira santarosai serovar Shermani]
          Length = 456

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           + ++ K +  E    +   S  K  +    K+     ++  +      A +    V    
Sbjct: 279 AEEVRKILGGELPTGIESGSDPKKGSKNFPKQTLSWPEEEENKTKPETAKSSGPPVEIRR 338

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T  GI IS+    N+ +FD +SS    E  + L+KI  VL    +  I I GHTD     
Sbjct: 339 TEEGIAISL----NSVLFDHNSSQLKDEAKLELKKIASVLKKYEDREIRISGHTDN---S 391

Query: 279 NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                N +LS +RA S  + L    G+ E R+    G+   +    +        NRR+D
Sbjct: 392 GGDEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQKNRRVD 450

Query: 336 ILV 338
           I +
Sbjct: 451 ITI 453


>gi|203284201|ref|YP_002221941.1| flagellar motor rotation protein B [Borrelia duttonii Ly]
 gi|201083644|gb|ACH93235.1| flagellar motor rotation protein B [Borrelia duttonii Ly]
          Length = 262

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 20/176 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           S   + +  + K+    +K  + ++   V       V+      G+++S++       FD
Sbjct: 81  SFMSLPSTAKNKQASQASK--NKSIIEFVEKIQSNKVIVRRHERGVVVSLLAD---AFFD 135

Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292
            +S+     +   V+QKI   +           I GHTD        I + NW LS  RA
Sbjct: 136 SASAEVKLDDNRDVIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195

Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +  + ++       +I        +SGFA  R     D     + NRRIDIL+  
Sbjct: 196 VNMLEQILNY-TDHSKIESIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73
          KK            + + Y D +T+L+ FF+ M+ +N     ++  K +   F   G
Sbjct: 6  KKKRSKCEDGGAPEYMVTYGDMVTLLLVFFVTMFSLNDVIMKENVLKIMSASFTGSG 62


>gi|194366042|ref|YP_002028652.1| hypothetical protein Smal_2266 [Stenotrophomonas maltophilia
           R551-3]
 gi|194348846|gb|ACF51969.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 212

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246
           ++S  L   V     +    +T    +        ++++D R     + +F  +S    P
Sbjct: 43  ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVDGRIGISGSVLFALNSDQLQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L
Sbjct: 103 EGQELLRSLAAPLAAYLGTREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV  D +   + F   +     A +   + NRR++I
Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNADEAGRARNRRVEI 200


>gi|89889933|ref|ZP_01201444.1| putative outer membrane protein, ompA family [Flavobacteria
           bacterium BBFL7]
 gi|89518206|gb|EAS20862.1| putative outer membrane protein, ompA family [Flavobacteria
           bacterium BBFL7]
          Length = 457

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +     T +FD   +    E+  VL  I  +L        SI GHTD+      A+ N 
Sbjct: 345 QLNQYAKTILFDTGKATIKAESAKVLSDITAILKKYPTAKFSIDGHTDSV---GSAKLNQ 401

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           RLS  RA      L+ +G+ E R+S + G+   R      +    + NRR++I + +
Sbjct: 402 RLSDSRANEVKNYLVANGIDEFRLSSV-GYGEARPVADNKTKTGRAQNRRVEINLVN 457


>gi|298208824|ref|YP_003717003.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83848751|gb|EAP86620.1| putative flagellar motor protein MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 280

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 99/241 (41%), Gaps = 15/241 (6%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           ++    +  T  +K+  + + N         +    +       K + +     + ++  
Sbjct: 33  DNTRSTLTKTQVEKEELQAKYNSIQDRVEAYNTKINSLKDESDAKFETVGDVAVISENQK 92

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV---KGVLFETTRTGIL 225
           K+    L  +  +K+   K  +   +LA  +  +L+  + +N     + +      T ++
Sbjct: 93  KQMRKTLQNVDPQKLANAKTLQDSINLA--VGYSLTKSMRENFDGNDEDIDVNIDETVVM 150

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-- 282
           IS+ D     +F+  S     +   +L+++  V+       + I GHTD    +  +   
Sbjct: 151 ISVSD---KLLFNSGSYRVSNKANSLLERLAAVINSEPAIEVMIEGHTDDRTVKQGSYIK 207

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           DNW LS +RA +  + L     V+ +++   +G + ++  +A+D     +ANRR  IL+ 
Sbjct: 208 DNWDLSTERATAIIRKLADDYNVAPEKMIA-AGRSSYKPLVANDSNENRAANRRTRILIL 266

Query: 340 D 340
            
Sbjct: 267 P 267


>gi|161526078|ref|YP_001581090.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189349207|ref|YP_001944835.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616]
 gi|160343507|gb|ABX16593.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189333229|dbj|BAG42299.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 22/289 (7%)

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
                 N  G  +     G       P  +       +    + + +             
Sbjct: 28  GAAYAQNAGGATVTPVGNGTVAASALPANAGAGSASAAASATLVRGTAGTLAPPPANAAP 87

Query: 124 YQRLENNIFYLSNSQQS------EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            Q +         ++ +      +    +   D  +  D+    +   ++ K     L  
Sbjct: 88  GQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQIEVGDVATPPNWSANVQKLLGTQLKQ 147

Query: 178 LSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISII 229
           +SK ++     +  +      +   ++I+S ++  +     I  G+    +  G+L   +
Sbjct: 148 ISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIKNGLRVSASEQGLLDQTL 207

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
             R    F+  S+   P+   +L ++   LA      + I GHTD          N  LS
Sbjct: 208 ANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGHTDN---SGNRTSNIALS 263

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             RA +    L+  G++  +++  +G    +    +D     + NRRI+
Sbjct: 264 QARADAVKGYLITKGIAPQQMT-TTGVGPDQPIAPNDTAEGRARNRRIE 311


>gi|114764496|ref|ZP_01443721.1| flagellar motor protein [Pelagibaca bermudensis HTCC2601]
 gi|114543063|gb|EAU46082.1| flagellar motor protein [Roseovarius sp. HTCC2601]
          Length = 634

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 90/243 (37%), Gaps = 16/243 (6%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++  T  +      +  +     +              E  +   ++    +++  E N 
Sbjct: 393 ELSQTEARASEAERQRELLNQQVAALRSQLSQLQGLLDEARESDAEAQVQLQNLGSELNA 452

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQ 231
            L  ++ E+    + ++  +   +  +  L    ++   +       + GI I       
Sbjct: 453 ALARVAAEERRRRQLEEEERRRLEAQAEDLERYRSEFFGRLREVIGDQDGIRIEGDRFVF 512

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR- 282
            +  +F    +   P     +  I  +L             ++ + GHTD +P R  AR 
Sbjct: 513 SSEVLFAPGEARLSPLGEGEIANIAGILQRVMSDIPPGIDWILRVDGHTDDTPLRPGARF 572

Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            DNW LS  RA S  + L++  G+   R+S  +GF  ++    +D     + NRRI++ +
Sbjct: 573 ADNWELSQARALSVVRFLVEDMGIPPQRLSA-NGFGEYQPVDPADSPEARAQNRRIELKL 631

Query: 339 EDR 341
            +R
Sbjct: 632 TER 634


>gi|71735961|ref|YP_274192.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556514|gb|AAZ35725.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 271

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|317153788|ref|YP_004121836.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944039|gb|ADU63090.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 247

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 18/209 (8%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK- 197
            +E    + +  ++  +   +     +   +E    +      + +   ++K   ++   
Sbjct: 47  DTEKFSETFSSVTQALQGKLEKVSTSRITQEEAGVLIDQAIMRRQIIESQRKVFAEVKTL 106

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +    + GLV+ N   G++                   MF        P+ + ++  + +
Sbjct: 107 QTKKGVEGLVSANFEDGLITIRVP-----------GDVMFGSGQVNLSPKGVELVTALKD 155

Query: 258 V-LAHSTEVISIRGHTDA-SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             + H  + I I G+TD  SP +N    DNW +S  RA +  + L+  G+   R++  +G
Sbjct: 156 FFIQHRDQNIKIIGYTDNISPGKNSRFLDNWEISALRAVNVLRELLGMGIESTRLTA-TG 214

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVEDR 341
            A+      +  +   + NRR++ ++E R
Sbjct: 215 LAYLNPIYPNTSEEFRAKNRRVEFVLEKR 243


>gi|152985769|ref|YP_001345545.1| hypothetical protein PSPA7_0149 [Pseudomonas aeruginosa PA7]
 gi|150960927|gb|ABR82952.1| hypothetical protein PSPA7_0149 [Pseudomonas aeruginosa PA7]
          Length = 449

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  R   +F  +S+    E   +L +I + L      + + GH+D  P   +    NW
Sbjct: 330 SVVTIRGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRPIATLRYPSNW 389

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           +LS  RA     +L  +     R +   G +        AS    + NRR++I V
Sbjct: 390 KLSQARAQEVADLLGATTGEAGRFTA-EGRSDTEPVATNASAEGRARNRRVEITV 443


>gi|332715427|ref|YP_004442893.1| OmpA-like porin [Agrobacterium sp. H13-3]
 gi|325062112|gb|ADY65802.1| OmpA-like porin [Agrobacterium sp. H13-3]
          Length = 503

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 15/162 (9%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           KI+  ++  RL+    K+ + L   V   +   V        + + I    N+ +F   S
Sbjct: 325 KIVEPRQPSRLE----KLMAFLQPEVDRKL---VTLADVNGRLRVRI---NNSGLFTTGS 374

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300
           +   P+   ++Q+IG  LA       + G+TD  P + +    NW LS  RA +   +L 
Sbjct: 375 ADVSPQFRDLIQRIGGALAAEKFRAVVIGYTDTVPIKTVEFPSNWHLSEARAKAVGDILS 434

Query: 301 KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           +    E  ++   G A         ++     NRR +I+V  
Sbjct: 435 QFTGPEAILT--EGRADSDPIADNKTEEGRQINRRTEIMVLT 474


>gi|56476024|ref|YP_157613.1| outer membrane lipoprotein [Aromatoleum aromaticum EbN1]
 gi|56312067|emb|CAI06712.1| outer membrane lipoprotein containing OmpA/MotB domain [Aromatoleum
           aromaticum EbN1]
          Length = 232

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +++     ++   ++G            E  R G  I +    N   FD + +   P+  
Sbjct: 74  RQMDKQEAELREQMAGT---------GVEVQRQGDTIRLQAPENIT-FDTNRADIKPQFQ 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL ++ + +    + VI + GHTD+      A  N  LS +RA +    L++ GV  +R
Sbjct: 124 PVLGQLAQSIQQYPDTVIQVEGHTDSV---GSASYNQTLSENRAGAVRSYLIQRGVDANR 180

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           ++ + G+   R     ++    + NRR+++L+
Sbjct: 181 LAAV-GYGLTRPVADNSTAAGRAQNRRVEMLI 211


>gi|325286152|ref|YP_004261942.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321606|gb|ADY29071.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 452

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 29/261 (11%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+      P+       D       +K++   + GS           + I    ++  +
Sbjct: 212 AGLEAFNGCPDADGDGIED-------SKDACPNEAGSKEMNGCPDADGDGIADKDDACPN 264

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           E    +L    +   D     D +         N   P   K+K   + +  +  ++A  
Sbjct: 265 EAGTAALNGCPDADGDGVADKDDKCPSEAGPAANNGCPWEDKDKDGVLDKDDKCPEVAGT 324

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++     V + + K              + D   T +FD   S    E+  V+  I  +
Sbjct: 325 VANNGCPEVTEEVQKK-------------LNDYARTILFDTGKSSIKAESTAVMVDIITI 371

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L        ++ GHTD+      A  N +LS  RA S  + L++ G+ E R+S + G+  
Sbjct: 372 LKEYPNAKFTVEGHTDSV---GSATLNQKLSESRALSVKEFLVEKGIGEFRLSAV-GYGE 427

Query: 318 HRLKIASDPMNSA--NRRIDI 336
            +    +        NRR++I
Sbjct: 428 DKPIATNKTRAGRKQNRRVEI 448


>gi|218658643|ref|ZP_03514573.1| putative outer membrane porin involved in nitrogen fixation
           [Rhizobium etli IE4771]
          Length = 262

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 8/200 (4%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
             +     E+  +L         +   E     P                    ++ + L
Sbjct: 35  NRASDGTFERLANLPPRETPSVLVKVPEPPRESPPVIVAQTPPPPPPPQVKPPSRLDNLL 94

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + L  +   K V    +   +L+ I    N+ +F   S+    +   +LQ+IG  LA   
Sbjct: 95  AFLQPEVEKKLVTLSDSNGRLLVRIS---NSGLFATGSAEVSEKFHDLLQRIGGALAAEK 151

Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
               + G+TD  P R I    NW LS  RA +  ++L         ++   G A      
Sbjct: 152 FRAVVVGYTDNVPIRTIQFPSNWHLSEARAKAVGEILASFTGPGAILT--EGRADSDPIA 209

Query: 323 ASDPMNSA--NRRIDILVED 340
            +D       NRR +ILV  
Sbjct: 210 GNDTQEGREMNRRTEILVLT 229


>gi|254489059|ref|ZP_05102263.1| type IV / VI secretion system protein, DotU family [Roseobacter sp.
           GAI101]
 gi|214042067|gb|EEB82706.1| type IV / VI secretion system protein, DotU family [Roseobacter sp.
           GAI101]
          Length = 478

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 13/176 (7%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           E   LP +  E  + +    +   +  ++   L+  +A  +        +  G  I+ + 
Sbjct: 310 ERVALPDVPVEPQVTVYEAPKTGQV-DRVRDQLADEIAAGL-----TTVSEEGDFIA-VR 362

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLS 288
                 F + +++   E+  ++ +I  VL +    I + GH+D  P   R   + N  LS
Sbjct: 363 LGEALQFGEGAAVLASES-PIIARIATVLENEPGSIIVEGHSDNIPLSGRGRYKTNEELS 421

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             RA +   VL +     DR++ + G    +  + +D     S NRR+DIL+   Q
Sbjct: 422 AARAAAVSDVLAQYMSDPDRMT-VEGAGASKPLVRADTPEARSRNRRVDILLLKEQ 476


>gi|237654026|ref|YP_002890340.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|237625273|gb|ACR01963.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 374

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            ++ ++       L   K+ A  +  +L++L ++++  L+G V +       F      +
Sbjct: 179 AAVREQLEQLNAALDAAKLAAKDKDLKLEELGRELNLALAGRVKELARYRSEFFGRLQEV 238

Query: 225 L-----ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVIS 267
           L     + I+  R    +  +F  +S     + +V L ++ E L             V+ 
Sbjct: 239 LGKRKDVQIVGDRFVFSSEVLFASASDEVSADGMVQLTRLAETLKTLSADMPKDLPWVLQ 298

Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           + GHTD  P        NW LS  RA +  + L   G+  +R++  +G+       A   
Sbjct: 299 VDGHTDRRPIATARFPSNWELSTARALAIVKFLRGQGIPPERLAA-TGYGEFHPLDARST 357

Query: 327 MNS--ANRRIDILVEDR 341
             +   NRRI++ +  R
Sbjct: 358 EEAYTRNRRIELKLTSR 374


>gi|163742880|ref|ZP_02150264.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10]
 gi|161383844|gb|EDQ08229.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10]
          Length = 655

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 19/205 (9%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS---STLSGL 206
            +       +  +L + +N           + ++L    +KRL+  A+++S     L   
Sbjct: 447 KARDAAQSVQMQNLGQDLNAALARAAAEERRRRLLEESERKRLEAEAEQLSSKAQDLEQY 506

Query: 207 VADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262
            ++   +       + G+ I        +  +F   S+   P     + K+  +L     
Sbjct: 507 RSEFFGRLRDVLGNQEGVRIEGDRFVFASEVLFSPGSADLSPAGRAEIGKVAGILQAVAA 566

Query: 263 ------TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
                   +I + GHTD +P        DNW LS  RA S  + ++++ G+  +R+S  +
Sbjct: 567 AIPPEINWIIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-N 625

Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336
           GF  ++    +      + NRRI++
Sbjct: 626 GFGEYQPVNPAPTAVARAQNRRIEL 650


>gi|296271644|ref|YP_003654275.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296095819|gb|ADG91769.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 271

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           +  K     ++      E  +  +   Q+ +   +  T + +K  D  +  D+E +    
Sbjct: 47  IPEKTVPIQEEIVEGPSEKVVPPIIEDQKDDAVIDENTDEDQKKIDDIEKPDIENADIIV 106

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           ++     +   K + +   K++++L+ KI       + D+ ++  + +  +T   I+ + 
Sbjct: 107 DDK--KEVDNTKKVVIPEDKKIEELSHKIQ---PKNIQDDTIESKMDKNKKTQDEINAVI 161

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
            ++   F +  +    E+  V+++I ++L ++    I I GHTDA    ++ +  W +SL
Sbjct: 162 SKDHIFFKRLGTDITDESYKVVEQIAKILKNNPSVKIEIGGHTDAKGEADVNQ--W-ISL 218

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA S  + L K G++EDRI+ + G+   +  + +D    +S NRR++  +
Sbjct: 219 QRAKSVKKELEKLGIAEDRITAV-GYGESQPLVPNDKNGYSSENRRVEFKI 268


>gi|229593379|ref|YP_002875498.1| hypothetical protein PFLU6014 [Pseudomonas fluorescens SBW25]
 gi|229365245|emb|CAY53556.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 429

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+G + ++I  G +       +  S++  R   +F  +SS  + +   ++ +I + +  
Sbjct: 287 RLAGFLVEDIKAGRV--AVEDAVDRSVVTIRGDELFASASSSIVDDYQPLMLRIADAIRK 344

Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D  P   +    NW LS  RA S   +L       DR S   G +    
Sbjct: 345 VKGQVRVTGHSDNRPIATLRFPSNWALSEARAKSVLDILAAKTGQADRFSA-EGRSDTEP 403

Query: 321 K--IASDPMNSANRRIDILVE 339
               A+    + NRR++I V 
Sbjct: 404 VATNATAEGRARNRRVEITVL 424


>gi|295095609|emb|CBK84699.1| type IV / VI secretion system protein, DotU family [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 412

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 8/176 (4%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +    +  L  + + ++     ++  + L   ++  L G +   I  G+           
Sbjct: 225 LGDNTSPVLAKIYQSQLPETTIQQPARQLPAVLN--LRGFLKPEIDAGL-VAVKDEADR- 280

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S++       V+ +I + + + +  I + G++D  P R+     N+
Sbjct: 281 SVVILKGDGLFASASTVVRDRYEPVIDRIAQAMNNVSGKILVVGYSDNVPIRSARFASNY 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            LSL+RA S  + L  S    +R+    G         +      + NRR++I + 
Sbjct: 341 ELSLERARSVQKQLQGSLSQPERVKA-EGRGEINPVAPNTTPENRARNRRVEITLL 395


>gi|21244837|ref|NP_644419.1| hypothetical protein XAC4120 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110541|gb|AAM38955.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 451

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   LS      +++  + E       + +    +  MF         +   ++ +I  
Sbjct: 309 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVELQQRGLIAQIAA 363

Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +      + + GHTD  P R++   DN+ LS  RA +  QVL     +  R+  I   A
Sbjct: 364 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEAIGAGA 423

Query: 317 HHRL--KIASDPMNSANRRIDILVEDRQ 342
              +   +      + NRR++IL +  +
Sbjct: 424 SQPIAQPVQLPANRARNRRVEILFQPGE 451


>gi|153003419|ref|YP_001377744.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026992|gb|ABS24760.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 205

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVIS 267
             + K    + T  GIL+++   +N  +FD +S+    E +  L ++G++LA  + + I 
Sbjct: 74  KELEKVAETKRTENGILVNM---KNDILFDTNSADLKGEAVTQLTQVGDILAKYADDRIR 130

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I GHTD+         N  LS  RA S   VL+  GV E++I+ + G    +    +   
Sbjct: 131 IEGHTDS---SGSDSLNEALSRKRADSVRTVLVSRGVREEQIT-VVGNGETKPIADNATK 186

Query: 327 -MNSANRRIDILVE 339
              + NRR+++ ++
Sbjct: 187 EGRAKNRRVELHID 200


>gi|91218366|ref|ZP_01255310.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
 gi|91183504|gb|EAS69903.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC
           700755]
          Length = 277

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 20/212 (9%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           E   N +   S + + +      E  +  E N      + + + A K      + AK + 
Sbjct: 62  EGYNNKIASLSTEKEGMMVQVPNENLVLSENNKAAMRKTLKSVPAAKL-----EGAKSLK 116

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQK 254
            +L+  +A NI K +    +   + ISI +        +  +F  SS     +   +L +
Sbjct: 117 DSLNIAIAHNISKNMGESGSD--LNISIEETMVKINIDDNLLFGDSSFRVGSDADEILSR 174

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           I +VL       + + GHTD+   +  +   DNW LS  R+ +  + L  K GV+ D++ 
Sbjct: 175 IAKVLNSEPSLEVLVEGHTDSRTIKKDSYIIDNWDLSARRSAAIVRRLENKFGVASDQLI 234

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVED 340
            ++G + +   + +D  +  + NRR  I++  
Sbjct: 235 -VAGRSSYDPLVPNDTKDNMAKNRRTQIVIMP 265


>gi|190574725|ref|YP_001972570.1| hypothetical protein Smlt2808 [Stenotrophomonas maltophilia K279a]
 gi|190012647|emb|CAQ46275.1| putative OmpA family membrane protein [Stenotrophomonas maltophilia
           K279a]
          Length = 212

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246
           ++S  L   V     +    +T    +        ++++D R     + +F  +S    P
Sbjct: 43  ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVDGRIGISGSVLFALNSDQLQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L
Sbjct: 103 EGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV  D +   + F   +     A++   + NRR++I
Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNANEEGRARNRRVEI 200


>gi|262198644|ref|YP_003269853.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081991|gb|ACY17960.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 637

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286
           ID  +   F+ +S+    E+  +L  +   +  + ++  I ++GHTDA   R  A  N R
Sbjct: 522 IDILDKVYFEFNSANIKRESFPILDAVAATIMGNPDIRLIEVQGHTDA---RGSASYNLR 578

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           LS +RA S    L+K GV  DR+    G+   +   +S+    ++ NRR++ L+ +R
Sbjct: 579 LSDERAKSVRAYLLKKGVEPDRVDA-KGYGETKPIDSSNTEKAHATNRRVEFLIMNR 634


>gi|163786625|ref|ZP_02181073.1| putative flagellar motor protein MotB [Flavobacteriales bacterium
           ALC-1]
 gi|159878485|gb|EDP72541.1| putative flagellar motor protein MotB [Flavobacteriales bacterium
           ALC-1]
          Length = 283

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 12/207 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198
           E  +     +  K +     T       ++    L  +  EK+   K  K   +LA +  
Sbjct: 70  EDVEGLAIENKAKFEVSKDGTVASGVSKEKMRATLQNVDPEKLAGAKTLKDSMNLAVQHN 129

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +S  ++    +   + ++ +   T ++ISI D     +F+ +S     +   +L+K+ +V
Sbjct: 130 LSKAMNTEDLNE-DEDIVVDINDTVVMISIADDM---LFNTASYRVSNKADKILKKLADV 185

Query: 259 LAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +       + + GHTD+         DNW LS+ RA S  + L K   V+ +++   SG 
Sbjct: 186 INSEPSLDVMVEGHTDSRSINTAKVSDNWELSVLRATSVVKKLQKQFKVAPEQLIA-SGR 244

Query: 316 AHHRLKIASD--PMNSANRRIDILVED 340
           + ++  + +D     + NRR  I++  
Sbjct: 245 SSYQPLVENDSRDNRAKNRRTRIILMP 271


>gi|330959066|gb|EGH59326.1| OmpA/MotB [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 271

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + + D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQANADFQKVKEDTDVLRSAPKDVIRSGESLARAERLSSYLGSGADVSHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLLLSQERLAKMDLERQRMQLALREAKLASAQQQGRWLEDQILSLATTQT 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
             ++N  LS DRA +   +LM  G+ E RI ++ G+         AS+   + NRR++I+
Sbjct: 201 DRQENLNLSKDRAQAVADMLMDLGIDEKRI-QVQGYGQQFPVDGNASERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|260591686|ref|ZP_05857144.1| OmpA family protein [Prevotella veroralis F0319]
 gi|260536329|gb|EEX18946.1| OmpA family protein [Prevotella veroralis F0319]
          Length = 288

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q  +     NN    S   Q    + S         +  ++ +       +    +   +
Sbjct: 43  QSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINISKLVDQINESN 102

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +     ++ K +   L   +++ L+  ++   +K V  +  +  + IS+ D     ++  
Sbjct: 103 QYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKS 159

Query: 240 SSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRA 292
            S          L KI +++       + I G+TD  P           R+NW LS  RA
Sbjct: 160 GSYEINDRAEQTLSKIAKIITDYSDYDVLIEGNTDNVPINTANDKMKNIRNNWDLSCLRA 219

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
            S  Q L     V+  R++   G   +     +D       NRR  I++  +
Sbjct: 220 ASVVQYLQDHFNVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIITPK 270


>gi|126725798|ref|ZP_01741640.1| hypothetical protein RB2150_06318 [Rhodobacterales bacterium
            HTCC2150]
 gi|126705002|gb|EBA04093.1| hypothetical protein RB2150_06318 [Rhodobacterales bacterium
            HTCC2150]
          Length = 1017

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 156  DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
            D  + T +     +     L   S++K +A      ++ L ++ +  L    +D   +  
Sbjct: 819  DAAQGTQITVLTEELNTALLRTASEQKKIAKLEAAEVKRLEEE-AKKLESFKSDFFGQLR 877

Query: 216  LFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEV 265
                 R G+ I        +  +F    +   P     + K+ ++L             V
Sbjct: 878  QVLAGREGVKIVGDRFVFSSEVLFPPGGAELSPAGEAEVAKVADILQDVIDKIPANIDWV 937

Query: 266  ISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI 322
            I + GHTD   F  +    +NW LS  RA S  Q ++ S G+  DR+S  +GF  ++   
Sbjct: 938  IRVDGHTDNVAFNGLGKYSNNWELSQGRALSVVQFMVSSFGLPPDRLSA-NGFGEYQPIN 996

Query: 323  ASDP--MNSANRRIDILVEDR 341
             +D     + NRRI++ + ++
Sbjct: 997  LADTPEARAQNRRIELKLTEK 1017


>gi|289624411|ref|ZP_06457365.1| ompA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646675|ref|ZP_06478018.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867435|gb|EGH02144.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330987431|gb|EGH85534.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 271

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|294678506|ref|YP_003579121.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294477326|gb|ADE86714.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 422

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 27/246 (10%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
            +    E        ++Q       +     +  DL    D  K+ + E    +  L  +
Sbjct: 178 AEKTLTETRAESDRKAEQVARLNQQVAALRGQLADLQAVLDEAKARDTEAKVQVEALGSQ 237

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR--------- 232
              A+ +    Q     +                 + +   G +  ++D R         
Sbjct: 238 LNSALAQVAAEQKRRAALEEEARRKAEAEAKDLARYRSEFFGRMSQLLDGRAGVRVVGDR 297

Query: 233 ----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280
               +  +F   S+   PE    + ++ E        I         + G TD +P    
Sbjct: 298 FVFSSEVLFQPGSADLSPEGQAQISRVAETFRELAAEIPPEIDWLLEVDGFTDDTPLSGQ 357

Query: 281 A--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
              +DNW LS  RA S  + L+++ G +  R++  +GF   R   A  S    + NRRI+
Sbjct: 358 GEFKDNWELSQARALSVVKYLIEAQGFAPKRLAA-AGFGEFRPVAAGKSPEARAQNRRIE 416

Query: 336 ILVEDR 341
           + + +R
Sbjct: 417 LKLTER 422


>gi|283786435|ref|YP_003366300.1| T6SS protein Cts1U [Citrobacter rodentium ICC168]
 gi|282949889|emb|CBG89514.1| T6SS protein Cts1U [Citrobacter rodentium ICC168]
          Length = 451

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290
           +   +F   S    PE + V+++I   +      + I GHTDA+P       +N  LS  
Sbjct: 341 KGDALFLSGSVRVQPEMVKVIERIASEVQRVNGDVLIVGHTDATPISRPGLPNNVALSEK 400

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           RA    Q  + +G+ E ++ K+ G    +           + NRR++  V
Sbjct: 401 RAAEVAQYFIAAGLPESKV-KVRGVGSSQPVANEATAQGRAKNRRVEFFV 449


>gi|162454068|ref|YP_001616435.1| hypothetical protein sce5792 [Sorangium cellulosum 'So ce 56']
 gi|161164650|emb|CAN95955.1| hypothetical protein sce5792 [Sorangium cellulosum 'So ce 56']
          Length = 985

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 12/219 (5%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
              NI       +S       T          ++   + S               K+ A 
Sbjct: 775 KTGNIVGTVKDAESGDAVAGATIRLVDAAGREQTATADGSGAFRFPDLPAGAVTLKVEAQ 834

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
                +     + S      +  N    +       G  I I  Q +   F+  S+  L 
Sbjct: 835 GYMNHVNQADVRTSEDTRAALTVNKRPKISLVKVL-GNEIKISRQIH---FETDSAKILG 890

Query: 247 ETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           ++  ++++I +VL  +     + I+GHTD +        N  LS  RA +    L+++GV
Sbjct: 891 DSNALMEEIADVLQRNPNIRKVEIQGHTDNT---GGREHNQTLSEARANAVRAWLIRAGV 947

Query: 305 SEDRISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341
              R+    G+   R    +  P N + NRR+  ++ ++
Sbjct: 948 DGSRLLA-KGYGQDRPVAPNVTPANKAKNRRVQFIIVEK 985


>gi|302035624|ref|YP_003795946.1| hypothetical protein NIDE0237 [Candidatus Nitrospira defluvii]
 gi|300603688|emb|CBK40019.1| exported protein of unknown function [Candidatus Nitrospira
           defluvii]
          Length = 513

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPF----R 278
            I++ D  +   +D       P  + +L+++ E L  +     + + GH+D        +
Sbjct: 309 RINLDDLADQLEYDSGEVKVKPAGVPILEQLAEYLRTAAGSQQVRVEGHSDNMEIGPSLK 368

Query: 279 NIARDNWRLSLDRAY-SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
            +   NW LS  RA      ++ K G+   ++S + G+   R    +  +     NRRI+
Sbjct: 369 GVFPTNWELSKARAAEIVRYLIEKGGMDSAKLSAV-GYGASRPVAGNGTEEGRKKNRRIE 427

Query: 336 ILVEDRQ 342
           ++++  +
Sbjct: 428 VVLDSPE 434


>gi|187477259|ref|YP_785283.1| hypothetical protein BAV0750 [Bordetella avium 197N]
 gi|115421845|emb|CAJ48363.1| probable outer membrane protein [Bordetella avium 197N]
          Length = 216

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246
           ++S  L   V +   +    ET    +        ++++D R     + +F  +S    P
Sbjct: 43  QLSVKLDEEVKERQAETQRRETLEQALAVPLAGGRVTLVDGRIGISGSVLFALNSDQLQP 102

Query: 247 ETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   +L  + E L        E++ + G TD        R   DNW LS  RA +  + L
Sbjct: 103 EGRELLMSLAEPLKTYLQSRDEILMVSGFTDNQRVSEHNRRFSDNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           + +G+    +   + F   +   ++D     + NRR++I    RQ
Sbjct: 163 IDAGIPASSLFAAA-FGSEQPVASNDDAEGQAKNRRVEIAPVPRQ 206


>gi|213025961|ref|ZP_03340408.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 65

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          K++          GSWKI YADFMT +MAFFLVMW+I+ +       I +YF       +
Sbjct: 1  KRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 60

Query: 78 TASKG 82
          T   G
Sbjct: 61 TGEIG 65


>gi|325920257|ref|ZP_08182205.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
 gi|325549250|gb|EGD20156.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865]
          Length = 224

 Score = 92.6 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V    V+    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDEEVKQRQVEAQRRKTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDQLQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +   L        E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKTLAAPLKEYLSSREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADETRRAKNRRVEI 200


>gi|84501356|ref|ZP_00999561.1| hypothetical protein OB2597_13363 [Oceanicola batsensis HTCC2597]
 gi|84390647|gb|EAQ03135.1| hypothetical protein OB2597_13363 [Oceanicola batsensis HTCC2597]
          Length = 350

 Score = 92.6 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              I+ +     F   SS     +  +L  I ++++      I++ GHTD+      A  
Sbjct: 236 RFEILSRTGNIYFRPGSSRLDDASAPLLDSIYDIISRCPGLRIAVAGHTDSI---GSAAS 292

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           N  LS  RA S    L   G+ + R+  + G+   R    +  D   S NRRI+  V
Sbjct: 293 NQSLSERRASSVVDYLAAKGLGQGRMIAV-GYGEARPVADNGTDAGRSRNRRIEFSV 348


>gi|209519379|ref|ZP_03268177.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209500193|gb|EEA00251.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 217

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +K+++      K +   L+G +A           T     I I       +
Sbjct: 43  ELSSKLEQEVKQRQAETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S+   PE   +L+ +   L+       +++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSAQLQPEGRALLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + F   +     A +P  + NRR++I
Sbjct: 153 QRALTVTRALIDEGVPASSVFAAA-FGSEQPVSSNADEPGRAKNRRVEI 200


>gi|46580633|ref|YP_011441.1| motB protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602060|ref|YP_966460.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46450052|gb|AAS96701.1| motB protein, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562289|gb|ABM28033.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311234364|gb|ADP87218.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 244

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
               +  ++ ++ L +  ++  + +      N V+GV+      G++   +   +  +F 
Sbjct: 77  EGALLETVRLQRELIEAQRQTYNEMRTYFTVNGVEGVIGAVFDEGVITLRV--PSEVLFA 134

Query: 239 KSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSA 295
             +    P    VL  + ++ +    + I+I+G TD       AR  DNW +S  R+ + 
Sbjct: 135 PGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNV 194

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            +  + +G+   R++  +G         +  D   + NRR++ ++E R
Sbjct: 195 LRYFLGAGIEPARLTA-TGLGELDPLFPNTSDENRARNRRVEFVLERR 241


>gi|282880441|ref|ZP_06289148.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305544|gb|EFA97597.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 298

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++  +S          L KI ++
Sbjct: 133 LTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKTASYEINDRAAETLSKIAKI 189

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           +       + + G+TD  P    +      R+NW LS  RA S  Q L K+ GV   R++
Sbjct: 190 IMDYKEYDVLVEGNTDNVPVNPNSPLMKNIRNNWDLSTLRASSVVQYLQKNYGVDPKRMT 249

Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
              G   +    +++       NRR  I++  +
Sbjct: 250 A-GGRGEYNPLTSNNTELGRQRNRRTQIIITPK 281


>gi|296536082|ref|ZP_06898216.1| OmpA family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263579|gb|EFH10070.1| OmpA family protein [Roseomonas cervicalis ATCC 49957]
          Length = 235

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 21/240 (8%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
                 ++ + +  E+     S   Q       +T+   +   +    + E+   +++  
Sbjct: 5   TATEARRRAEAEGGEHARLAESARAQVALLTQQVTQLRAELSRIAALLEAEEQSGRDKEA 64

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
            +  L +    A+    R+++L ++  S   G + D +             +        
Sbjct: 65  QISQLGQRLNAALA--ARVEEL-QRYRSDFFGRLRDVLGDRPEVRIVGDRFVFQ-----G 116

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--------ISIRGHTDASPFRNIAR--D 283
             +F    +         L+ + +VL   T          + + GH D SP R  AR   
Sbjct: 117 EVLFPVGGAELSAAGQQQLRALAQVLLEVTRRFPQDLAWILRVDGHADRSPLRAGARYAS 176

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341
           NW LS  RA +  Q L+  G+  +R++  + F  ++   + D P   + NRRI++ + DR
Sbjct: 177 NWELSAARAIAVGQFLIGEGLPPNRVAA-TAFGEYQPIDSGDSPEAFARNRRIELRLTDR 235


>gi|325295240|ref|YP_004281754.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065688|gb|ADY73695.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 251

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 192 LQDLAKKISSTLSGLVADN------------IVKGVLFETTRTGILISIIDQRNTPMFDK 239
           L   A +IS  L     DN            I +       +    + ++  +++ +F  
Sbjct: 83  LDQQANQISKDLGVKPIDNTNPEAPQVTGAPITENKPVAVVKEPNRVRVV-LKDSVLFGF 141

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           +S    PE    L+++   L+ + + VI I G TD++        N RLS  RA S    
Sbjct: 142 NSYQLKPEAKETLRRLARTLSQNPDTVIVISGFTDST---GSFDYNVRLSEKRAESVKNE 198

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           L+ +GV   RI  + G    +    ++     + NRR++ILV  +
Sbjct: 199 LVLNGVDPTRIL-VFGCGPKKPIAPNNTPEGRALNRRVEILVYPK 242


>gi|119953079|ref|YP_945288.1| flagellar motor protein MotB [Borrelia turicatae 91E135]
 gi|119861850|gb|AAX17618.1| chemotaxis MotB protein [Borrelia turicatae 91E135]
          Length = 262

 Score = 92.3 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L    K +    A K + ++   +       V+      G+++S++       FD +S+ 
Sbjct: 85  LPSTEKNKQASQASK-NKSIIEFIEKIQSNRVIVRHYERGVVVSLLAD---AFFDSASAE 140

Query: 244 PL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQ 297
               +    +QKI   +           I GHTD        I + NW LS  RA +  +
Sbjct: 141 VKLDDNRETIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARAVNMLE 200

Query: 298 VLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340
            ++     + +I        +SGFA  R     D     + NRRIDIL+  
Sbjct: 201 QILNY-TDQSKIQSIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250



 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73
          ++ +            + + Y D +T+L+ FF+ M+ +N     ++  K +   F   G
Sbjct: 4  LRDRKKRSKCAEGTPEYMLTYGDMVTLLLVFFVTMFSLNDIILKENVLKIMSASFTGSG 62


>gi|166713623|ref|ZP_02244830.1| hypothetical protein Xoryp_19825 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 224

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++S+ L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSNRLDEAVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +   LA       E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLAAPLAQYLRTREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|158424220|ref|YP_001525512.1| OmpA family protein [Azorhizobium caulinodans ORS 571]
 gi|158331109|dbj|BAF88594.1| OmpA family protein [Azorhizobium caulinodans ORS 571]
          Length = 494

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +SG +     +  L      G  + I  Q+   +F  +S+   P    V+ K+   LA
Sbjct: 355 QVISGFLEPE-QQAKLITVFGRGNSVVIQTQQE--LFASASTTLRPPYPEVIAKVAAALA 411

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ G+TD  P R     DN  LS  RA +  Q L        RI+ + G     
Sbjct: 412 KFKGPVNVLGYTDNVPIRTATFPDNLALSTARARAVGQALAAGLGGNARITTV-GKGDAD 470

Query: 320 LKIASDP--MNSANRRIDILVEDR 341
              ++D       NRR++I++  +
Sbjct: 471 PVASNDTPDGRQKNRRVEIVLTPQ 494


>gi|254438848|ref|ZP_05052342.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198254294|gb|EDY78608.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 743

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 21/238 (8%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
               QR    +     + + E  +     + E   D+  +  +E             L  
Sbjct: 510 SSDNQRQVALLNEQVAALRGEMGRLQALLNLENDADVMANVQIETLTQNLNTAMARALLA 569

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS--IIDQRNTPM 236
           E+   +  +  L+ +A + +  L    +D   +++ +L +    G+ I        +  +
Sbjct: 570 ERRARVLEEAELERMAAE-AVELERYRSDFLGLLRNILEDV--DGVRIQGDRFVFSSEVL 626

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR--DNWR 286
           F++ ++    E    + K+  +L             VI + GHTD  P        +NW 
Sbjct: 627 FEQGAAQLSGEGQREIAKVATILRDVAGDIPESIDWVIRVDGHTDNVPLSGAGEFANNWE 686

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           LS  RA S    ++    +  +R++  +GF  ++    ++   +   NRRI++ + +R
Sbjct: 687 LSQARALSVVLYMVNFLAIPPERLAA-NGFGQYQPINPANTTEARAQNRRIELKLTER 743


>gi|285019096|ref|YP_003376807.1| outer membrane protein [Xanthomonas albilineans GPE PC73]
 gi|283474314|emb|CBA16815.1| hypothetical outer membrane protein [Xanthomonas albilineans]
          Length = 216

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 225 LISIID----QRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVI-SIRGHTDASP 276
            +++ID     R   +F  +S    P+   +L  +   LA    +   I  + G TD   
Sbjct: 77  RVTLIDGRIGIRGNVLFALNSDQLQPQGRDLLDSLATPLAGYLKARNEILMVSGFTDDRQ 136

Query: 277 FRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331
            R   R   DNW LS +RA +  + L+ +GV  D I   + F   +     A D   ++N
Sbjct: 137 VRVGNRQFVDNWELSAERALTVTRALIDAGVPADAIFAAA-FGAQQPVASNADDAGRASN 195

Query: 332 RRIDILVEDR 341
           RR+++    R
Sbjct: 196 RRVEMAPLPR 205


>gi|304312414|ref|YP_003812012.1| Predicted OmpA family protein [gamma proteobacterium HdN1]
 gi|301798147|emb|CBL46369.1| Predicted OmpA family protein [gamma proteobacterium HdN1]
          Length = 244

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L +     + +++  +     +   L   +AD +  G     T     I I     + +
Sbjct: 42  ELGRTLQTEITKRQAEEQQRVALEEALEIALADPLASG---RITLDRGRIGIS---GSVL 95

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289
           F  +S+   PE + +L+++   L        E++ + G TD  P +       DNW LS 
Sbjct: 96  FALNSAELQPEGLALLREVSAPLRKYLEQRQELLMVSGFTDDLPIQKGNHSFTDNWALSA 155

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDI 336
           +RA +  + L+ +G+    +   +  A   +   SD    + NRR++I
Sbjct: 156 ERALTVTRALIDNGLPSTLVFAAAFGAEQPIASNSDAEGRAKNRRVEI 203


>gi|197122876|ref|YP_002134827.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196172725|gb|ACG73698.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 259

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 8/169 (4%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNT 234
            P  +      +  + ++ L K+I   +   V +   V  V        + + +      
Sbjct: 79  GPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE-- 136

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292
             FD   +   P+ + +L  I   +      + + GHTD +P  +  R   NW LS  RA
Sbjct: 137 -FFDPGQAALRPQALALLDAIAAEVVPLERPLRVEGHTDETPVGSGGRWMSNWELSAARA 195

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
            +    L ++  +   +    G              +   NRR+++++E
Sbjct: 196 ATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEAHERNRRVELVLE 244



 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%)

Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
          W + YADFMT+L AFF+VM+ ++  D+       +          T   G     + P  
Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDNKRVVQATESIRWAMHFSGTGGTGALPLFDGPPS 75

Query: 93 SSQNK 97
               
Sbjct: 76 EGGGP 80


>gi|94986926|ref|YP_594859.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731175|emb|CAJ54537.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00]
          Length = 237

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 9/202 (4%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +      K  L           K+ D     N      +  L   ++   + ++    LA
Sbjct: 27  AMTPPEVKEGLAAYFSSSDATFKTPDSSPISNNPLINQIDKLDTRQLKINETEQSHYALA 86

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            K+   L          G+  +     + +      +   F   ++   PE   V+  + 
Sbjct: 87  NKLKKMLMADAIPQSATGISADDVGVLLRV-----NSNSTFLPGTATLTPEGKKVMGTVL 141

Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            VL      + IRGH D       +    NW LS  RA +A Q L++ G+   RI  + G
Sbjct: 142 AVLREYNLYLVIRGHADIGEITKGSPFASNWELSGARAAAAAQYLVEHGIKASRIRSV-G 200

Query: 315 FAHHRLKIASDPMNS-ANRRID 335
           +A  R    S P  S  NRRI+
Sbjct: 201 YADTRPLEPSSPEGSTKNRRIE 222



 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
          GSWK+ YADF+T +MAFFL+MWI+  T  + K+ +  YF+       T         N P
Sbjct: 3  GSWKVAYADFVTAMMAFFLLMWILAMTPPEVKEGLAAYFSSSDATFKTPDSSPI--SNNP 60

Query: 91 ERSSQNKID 99
            +  +K+D
Sbjct: 61 LINQIDKLD 69


>gi|115378003|ref|ZP_01465184.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|115364980|gb|EAU64034.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
          Length = 636

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 39/271 (14%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           +   GI D  +    S               + +             +R +       + 
Sbjct: 397 SDGDGILDPDDK-CPSVPGVARFQGCPDTDGDGLVDPDDKCPSVPGVERFQGCPDTDGDG 455

Query: 138 QQSEHCK-NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +    K  S+    E      K TD ++  +  +N    P          ++ +L ++ 
Sbjct: 456 IEDASDKCPSVPGIHELKGCPPKDTDKDQLPDHRDNCPNEPGPAANQGCPVQQPQLVEIQ 515

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +                            I I D      FD   +  LP +  +L ++ 
Sbjct: 516 RD--------------------------RIEIKD---KVYFDSDKATILPRSNKLLDQVA 546

Query: 257 EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            ++    E   I I GHTD    R     N  LS  RA      L+  GV   R+    G
Sbjct: 547 RIIIEHPELEKIWIEGHTDE---RGSQDYNRELSQKRAEEVRDYLVTRGVPIGRLVP-KG 602

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           +       ++D     +ANRR++ L   R+G
Sbjct: 603 YGRQYPVASNDTVEGRAANRRVEFLTTPREG 633


>gi|238924159|ref|YP_002937675.1| hypothetical protein EUBREC_1797 [Eubacterium rectale ATCC 33656]
 gi|238875834|gb|ACR75541.1| hypothetical protein EUBREC_1797 [Eubacterium rectale ATCC 33656]
          Length = 275

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 105/327 (32%), Gaps = 69/327 (21%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +D P    +W+  ++D M +L+ FF++++ ++  D +  + +          L   
Sbjct: 3   KRRPEDPPKGAPAWQSTFSDLMNLLLCFFVLLFSMSTVDAEKFQLVIASLTSSVSVLPGG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S  I                                                    + + 
Sbjct: 63  STSI---------------------------------------------------GDGRL 71

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                + L    +   DL  S    +S  + ++       ++  L+   K     ++++I
Sbjct: 72  VGAGVSQLEFLDKYYNDLANSKSTTESTTEGDDKNAEEQYEQMELSESEK-----MSEQI 126

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L      +       E       + +       +F+   +  + E   V+ KI  +L
Sbjct: 127 EKQLENTSLQDA-----VEVDFNAQYVQLS-LNGALLFESGKADVMEEAYPVVNKISSIL 180

Query: 260 AH-STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           A     +I I GHTD  P   R+    N  LS+ RA S    +  +  ++   I   SG 
Sbjct: 181 AAYQDNLIEIEGHTDNVPVSSRSKYESNDVLSMYRALSVANYIRDNTSLNPAHIKS-SGR 239

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
             +     +      + NRR++I V +
Sbjct: 240 GDYDPVADNSTPEGRARNRRVEIKVYN 266


>gi|296156377|ref|ZP_06839215.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295892976|gb|EFG72756.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 215

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + L  +   TL   +A  +  G +         I I       +
Sbjct: 39  GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+     + E++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEILMVSGFTDDQRLREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + G        A +   + NRR++I
Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNADEQGRAKNRRVEI 200


>gi|91779292|ref|YP_554500.1| hypothetical protein Bxe_B0804 [Burkholderia xenovorans LB400]
 gi|91691952|gb|ABE35150.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 215

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + L  +   TL   +A  +  G +         I I       +
Sbjct: 39  GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+     + E++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEILMVSGFTDDQRLREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + G        A +   + NRR++I
Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNADEQGRARNRRVEI 200


>gi|332519379|ref|ZP_08395846.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045227|gb|EGI81420.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 476

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNT----PMFDKSSSIPLPETIVVLQKIGEVLA 260
           G VA+N    V+ + T+      +IDQ N+     +FD   S    +T  VL+ I  +L 
Sbjct: 343 GTVANNGCPEVVAQPTQE-----VIDQLNSYARTILFDTGKSSFKEQTKEVLKNITAILK 397

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
              +   +I GHTD+         N +LS  RA +    L+ +G+S  R+S   GF    
Sbjct: 398 EYPDSNFTIEGHTDSV---GSKSSNQKLSERRANAVRDYLIANGISASRLSA-YGFGEDY 453

Query: 320 LKIASDPMNSA--NRRIDILVE 339
              ++   N    NRR +I ++
Sbjct: 454 PVDSNATRNGRKNNRRTEIKLK 475


>gi|197117412|ref|YP_002137839.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
 gi|197086772|gb|ACH38043.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
          Length = 228

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E  R G  +  +   +  +FD       PE    L +    L  S   I+I GHTD++  
Sbjct: 97  EVVRDGDKV-YVALPSGILFDLGKDALKPEAKDALSRAAGTLKDSQTTITIEGHTDST-- 153

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
                 N  LS  RA      L+  GV   +++ I G+   R  + +  D   + NRR+ 
Sbjct: 154 -GSNAVNQPLSERRANRVRDYLVSQGVPGAKMAAI-GYGSSRPAVPNDSDANRALNRRVQ 211

Query: 336 ILVEDRQ 342
           I +   +
Sbjct: 212 IELTPNE 218


>gi|307718975|ref|YP_003874507.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM
           6192]
 gi|306532700|gb|ADN02234.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM
           6192]
          Length = 395

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +K+   +   + D  +     ET+  G+ I +        F   S++ LPE    L+KI 
Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSALLLPEEQEKLRKIA 310

Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           ++L+   E  + + GHT              LS++RA +    LMK GV       I G+
Sbjct: 311 QILSRYPERDLLVEGHT---ALAGTPEGRLALSIERAKAVADFLMKLGVRRPEQIVIRGY 367

Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340
              R    +  +   S NRR++I + +
Sbjct: 368 GATRPIADNTTEEGRSRNRRVEITILE 394


>gi|124007829|ref|ZP_01692531.1| outer membrane protein [Microscilla marina ATCC 23134]
 gi|123986775|gb|EAY26556.1| outer membrane protein [Microscilla marina ATCC 23134]
          Length = 715

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G  I +    N   FD   S     +   L ++   + +   + I + GHTDA       
Sbjct: 602 GQKIRL----NNLFFDVGKSALKSSSFAELNRLVNSMKNYPNMTIEVSGHTDAQ---GSP 654

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             N +LS DRA +    L   G+   R+ +  G+   +    +      + NRR++ ++ 
Sbjct: 655 AKNLQLSKDRANAVLNYLKSKGIPASRM-QAKGYGQTKPLATNGTAQGRARNRRVEFMIL 713

Query: 340 DR 341
            +
Sbjct: 714 KK 715


>gi|289662480|ref|ZP_06484061.1| hypothetical protein XcampvN_05177 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669716|ref|ZP_06490791.1| hypothetical protein XcampmN_14767 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 224

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDAEVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +   LA       E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLAAPLAQYLRAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|237803483|ref|ZP_04591068.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025465|gb|EGI05521.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 271

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 102/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLTSYLGSGADVSHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLVKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQT 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VL+  GV E RI ++ G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLIDLGVDEKRI-QVEGYGQQFPVDANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|332664040|ref|YP_004446828.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332332854|gb|AEE49955.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 651

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ +S+    E+   L  + ++L  +    I I GHTD         DN RLS  RA +
Sbjct: 549 FFETASAALRQESGPELDHLADLLNQNPNLRIQINGHTDNV---GTDADNLRLSEQRAKA 605

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            Y  L+  G++ +R+    GF   +    ++       NRR + +V 
Sbjct: 606 VYTYLVGKGIAAERL-AYKGFGETQPIADNNTEEGRKVNRRTEFVVL 651


>gi|134294581|ref|YP_001118316.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134137738|gb|ABO53481.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 319

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 22/278 (7%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                 + ++            ++   +       IT    +   G      +       
Sbjct: 46  TVATTALPSTPNASAAPGAAPGTASGTVVHGTAGTITPPPANATPGQVVAGGKVPDEATK 105

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL------ 184
              L   + +    N + +   +  D+    +   ++ K     L  +SK ++       
Sbjct: 106 AAVLQKLRDTYGAANVVDQI--EVGDVATPPNWSTNVQKLLGAQLKQISKGQLKINGTQI 163

Query: 185 ----AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
                +  + + Q LA  ++++L+      I  G+    +  G+L   +  R    F+  
Sbjct: 164 EVKGEVHNEAQRQQLASDMANSLNPTYT--IKNGLRVSASEQGVLDQTLANRTIE-FETG 220

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           S+   P+   +L ++   LA      + I GHTD          N  LS  RA +    L
Sbjct: 221 SATLTPQGKQILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYL 277

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           +  G+   +++  +G    +    +D     + NRRI+
Sbjct: 278 ITKGIQPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 314


>gi|302187430|ref|ZP_07264103.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 271

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|323697842|ref|ZP_08109754.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457774|gb|EGB13639.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 250

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 86/245 (35%), Gaps = 11/245 (4%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L       K+                     +               +T   +    + +
Sbjct: 7   LEQQGGGPKSDPPKPDEGIPPWMATFADMVTLLLCFFVLLLSFTNQDVTNFRKLMGSIQE 66

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           +  ++      ++      + ++  +++  +++ +L   +   +      ++ K     +
Sbjct: 67  ALGVQYEDRSAQSVPYADTTFKERQSVRENRQIVELGVILKKAIRSKDLTHMAK---VSS 123

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFR 278
            ++G+++ +  Q    +FDK S     E    LQ + + +  +   + IRGHTD  +P  
Sbjct: 124 DKSGVMLRLSSQ---LLFDKGSVELTAEAKQALQMVIDSMKQTDFNLVIRGHTDGETPES 180

Query: 279 NIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
                NW LS  RA S    ++  S +   R+  + G+   +  +   S+    ANRR++
Sbjct: 181 VQYGSNWSLSAARAASCLRYIIEHSDIPATRMKAV-GYGGSKPLLPGTSEENRQANRRVE 239

Query: 336 ILVED 340
                
Sbjct: 240 FFYMP 244


>gi|330875706|gb|EGH09855.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330967020|gb|EGH67280.1| ompA family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 271

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 12/244 (4%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           + + + S D +    +        ++ I    +  ++E   + L   ++       S+  
Sbjct: 30  QALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSSRY 89

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T  
Sbjct: 90  SEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR 149

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++      
Sbjct: 150 GLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---GDR 202

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            +N  LS DRA +   VL   GV E RI ++ G+       A+  +   + NRR++I+  
Sbjct: 203 EENLTLSKDRAQAVADVLTDLGVDEKRI-QVEGYGQQFPVDANASERGRAQNRRVEIVFS 261

Query: 340 DRQG 343
           D +G
Sbjct: 262 DEKG 265


>gi|108756980|ref|YP_628607.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|108460860|gb|ABF86045.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 409

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
           +T+     ++    Q++Q++  +          +S       TR  E+ +   ++    +
Sbjct: 153 VTQQQEAERMRMDAQRRQHEAEQLRRLAQQQEAESRRLAEKTTRLQEEAQRRARAESESR 212

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA--------DNIVKGVLF 217
            + +E +  L   ++ +     R++  ++L ++  + L             ++  + V  
Sbjct: 213 RLAQENHELLQRSAELEAEQEARRQVERELERERQARLDAEQRATEALTQLESTARDVKV 272

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                G+++++       +F  ++   LP     L ++   L  S   + I GHTD+   
Sbjct: 273 REEERGLVLTMS---GQVLFASNAVDLLPTAREQLTEVAHALKVSDSPMVIEGHTDSM-- 327

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N  LS  RA    + L+  GVS DRI ++ G   +R    +      + NRR++
Sbjct: 328 -GSDAMNEALSYRRAEHVREFLISQGVSRDRI-QVRGLGEYRPVANNSTPEGRANNRRVE 385

Query: 336 ILV 338
           I++
Sbjct: 386 IIL 388


>gi|288925232|ref|ZP_06419167.1| OmpA family protein [Prevotella buccae D17]
 gi|288337997|gb|EFC76348.1| OmpA family protein [Prevotella buccae D17]
          Length = 284

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 121 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAEETLSKIAKI 177

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           +       + I G+TD  P    +      R+NW LS  RA S  Q L  + GV   R++
Sbjct: 178 IMDYKDYEVLIEGNTDNVPVNTDSPKMKNIRNNWDLSALRASSVVQYLQNRYGVDPKRLT 237

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              G   +     +        NRR  I++  +
Sbjct: 238 A-GGRGEYNPVATNSTELGKQRNRRTQIIITPK 269


>gi|295699895|ref|YP_003607788.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295439108|gb|ADG18277.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 410

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++   +  +FD   +   P  T  ++  +  + AH  + I + GHTD        + N +
Sbjct: 292 VVTLDSMSLFDSGRAQLKPGSTRAMVDALEMIKAHPDKRILVAGHTDNV---GNPQSNLK 348

Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           LS  RA +    L+  SG++E +   I G+   R     ASD   + NRR++I +  
Sbjct: 349 LSTARAQAVRDWLIDVSGIAETQF-AIQGYGDTRPIASNASDDGRARNRRVEITLVP 404


>gi|42524415|ref|NP_969795.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100]
 gi|39576624|emb|CAE80788.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100]
          Length = 319

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 20/159 (12%)

Query: 199 ISSTLSGLVADNIVKGVL--------FETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           I    + L+A+  +  +L         E  + G    ++      +FD  +         
Sbjct: 70  IKEVSAALLAEQKIMNILKGSGDLNGVEIIKDGNNTLLLKFDGEVLFDSGAVEVKETAKP 129

Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307
            L+++   L        I++ GHTD+   ++   + NW LS  RA S  +   +SGV   
Sbjct: 130 NLRRVVSALRSIEGVNKIAVEGHTDSDAIQSGLVKSNWELSSLRASSVVRYFEESGVDS- 188

Query: 308 RISKISGFAHHRLKIASDPMNSA--------NRRIDILV 338
           ++   +GF                       NRR+ + V
Sbjct: 189 KLLSAAGFGSSHPLAPEVDKAGVSIPANKVLNRRVVVAV 227



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYF 69
          +    +  ++  +W + YAD MT+L  FF++M+ ++  D+      +K + +YF
Sbjct: 13 EEHEHEMAHDESNWLVSYADMMTLLFGFFVLMYSMSRFDNTKFDLVRKEVAKYF 66


>gi|66045239|ref|YP_235080.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63255946|gb|AAY37042.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 271

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  G+ E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGIDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|319952835|ref|YP_004164102.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421495|gb|ADV48604.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 448

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 28/270 (10%)

Query: 78  TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131
           T   GI+D+ +  PE +     +   D        +K++   + GS           + +
Sbjct: 192 TDGDGIYDKDDACPEVAGLEAFNGCPDADGDGIEDSKDACPNEAGSKEMNGCPDADGDGV 251

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189
               ++  +E    +L    +   D     D E         N   P L K+    + + 
Sbjct: 252 ADKDDACPNEAGTAALKGCPDADGDGVADKDDECPAEAGPASNKGCPFLDKDGDGVLDKD 311

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
               D+A  +++     V   + K              + D   T +FD   S     + 
Sbjct: 312 DMCPDVAGTVANKGCPEVTAEVQK-------------QLNDYARTILFDTGKSSIKAAST 358

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            V+  I  +L        ++ GHTD+      A+ N  LS  RA S  + L++ G+ E R
Sbjct: 359 SVMVDIITILKEYPNAKFTVEGHTDSV---GSAKLNQSLSESRALSVKEFLVEKGIEEFR 415

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           +S I G+   +   ++        NRR++I
Sbjct: 416 LSAI-GYGEEKPIASNSTRAGRTQNRRVEI 444


>gi|254525016|ref|ZP_05137071.1| OmpA family protein [Stenotrophomonas sp. SKA14]
 gi|219722607|gb|EED41132.1| OmpA family protein [Stenotrophomonas sp. SKA14]
          Length = 212

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246
           ++S  L   V     +    +T    +        +++ID R     + +F  +S    P
Sbjct: 43  ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLIDGRIGISGSVLFALNSDQLQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   +L+ +   LA       E++ + G TD +P R   R   DNW LS  R+ +  + L
Sbjct: 103 EGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV  D +   + F   +     AS+   + NRR++I
Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNASEDGRARNRRVEI 200


>gi|213962352|ref|ZP_03390615.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena
           Capno]
 gi|213955018|gb|EEB66337.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena
           Capno]
          Length = 360

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
            +   EN  +  + + K   +K KK  + ++       +      +      E     ++
Sbjct: 191 PLTARENPIVDHVERTKEPKVKEKKDRKRVS-------ANKAITRVETPEEREERTQRVV 243

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
             I     T +FD   S+  P+   +L  I  ++  + +    + GHTD +        N
Sbjct: 244 KQINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHN 300

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDR 341
            +LS DRA +  Q L + GVS+ R+    G+   R   ++D       NRR++I +++D+
Sbjct: 301 LKLSQDRADAIKQYLSRHGVSKKRLEA-KGYGQTRPIESNDTERGKEINRRVEINVIKDQ 359

Query: 342 Q 342
           Q
Sbjct: 360 Q 360


>gi|82701882|ref|YP_411448.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
 gi|82409947|gb|ABB74056.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 225

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+++  +++    +G   +      + +T+   + +   D  +   FD   +   P   
Sbjct: 77  RRMEEQKREMEQATAGTGVE------VVKTSDNRLRL---DIPSDISFDTGRADIRPNFR 127

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL      L ++    ++I GHTD+S    +      LSL+RA S    L   GVS +R
Sbjct: 128 PVLDSFATSLNNNPITEVTIIGHTDSSGSDAVNNP---LSLNRAASTRDYLASRGVSPNR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           + +I G       +A+D     + NRR++I V + +
Sbjct: 185 V-RIEGRGSREPIVANDTPQNRARNRRVEIYVAEPK 219


>gi|297183087|gb|ADI19231.1| flagellar motor protein [uncultured delta proteobacterium
           HF0200_14D13]
          Length = 211

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 20/132 (15%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIAR- 282
           I+      +F    +      I VL    + +    E     +++ GH D  P       
Sbjct: 65  IVSLPQDFLFRSGDAELKAGAIRVLTPFFQKIRDLPEHQGDLVTVEGHADNLPIHTDKYP 124

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA-SDP------------MN 328
            NW LS  RA +   +L+   G + D    ++G++  R K++  D               
Sbjct: 125 SNWELSTARATNVATMLINRMGYASD-TLSVNGYSDTRPKVSYKDARGNALRGTALEVAR 183

Query: 329 SANRRIDILVED 340
             NRR++I++  
Sbjct: 184 RTNRRVEIVITT 195



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          ++++          G+W I +AD MT++  FF+++ +++    +
Sbjct: 1  MRRR-------EGGGAWVITFADLMTLMFCFFVLLTVLSTQPKN 37


>gi|218460723|ref|ZP_03500814.1| flagellar motor protein MotB [Rhizobium etli Kim 5]
          Length = 72

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1  MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61 TKKAIEQYFNPF 72
          TK A+  YFNP 
Sbjct: 61 TKAAVATYFNPI 72


>gi|330951673|gb|EGH51933.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 271

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N  LS DRA +   VLM  G+ E RI ++ G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLTLSKDRAQAVADVLMDLGIDEKRI-QVEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|325275390|ref|ZP_08141334.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324099474|gb|EGB97376.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 270

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 110/256 (42%), Gaps = 26/256 (10%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           E++S     +  D  + +++    I +     + +RL + I   S+ +   +     +  
Sbjct: 32  EQASAAFQKVKDDSDVLRSAPRDVIRAGESLARAERLSSYIGTGSDVRHYAYLSQRYSEI 91

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           + +   L  + + +  ++ E       L + K+ +++++       K + + ++ L ++ 
Sbjct: 92  AGEHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQ------GKWVEAQIAALASEQ 145

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIR 269
                       G+++++ D     +FD  S+         + K+ + L  +   +  I 
Sbjct: 146 A---------DRGLVMTLGD----VLFDTGSANLKNTASRTVLKLVQFLQLNPHRVVRIE 192

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           G+TD++       +N +LS DRA S   +L+  GV E R+ ++ G+         AS+  
Sbjct: 193 GYTDST---GTPEENLKLSHDRAQSVADMLVDLGVDEKRL-QVEGYGDQYPIEANASERG 248

Query: 328 NSANRRIDILVEDRQG 343
            + NRR++I+  D +G
Sbjct: 249 RAQNRRVEIVFSDDKG 264


>gi|258405399|ref|YP_003198141.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797626|gb|ACV68563.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 227

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 13/202 (6%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +   +                  L ++I K+    L       +L      R+     + 
Sbjct: 23  TAPNQQQRGTAIGTAAGAGVGAILGQAIGKDTKGTLIGAGIGAVLGGIAGNRVGAYMDRQ 82

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L   +A      V  E       I      +  +FD  S+   P  +  L +   V 
Sbjct: 83  EQELRNALAQERAASVRREQD-----ILRATFDSNVLFDFDSARVKPGGVSELNRAASVF 137

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  I + GHTDA         N  LS  RA +   VL++ GV   R+S + G+   
Sbjct: 138 NRYPQTRIRVEGHTDA---SGSEEYNMDLSRRRAQAVKDVLVQQGVDPRRVSTV-GYGET 193

Query: 319 RLKIASDPMNSANRRIDILVED 340
           +  ++SDP  +ANRR+++++E 
Sbjct: 194 QP-VSSDP--AANRRVEVVIEP 212


>gi|104782672|ref|YP_609170.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95111659|emb|CAK16380.1| putative outer membrane protein; OmpA family [Pseudomonas
           entomophila L48]
          Length = 269

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 17/177 (9%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +E      L ++++    R+ +L  + ++     + +VA      +  E T  G+++++ 
Sbjct: 101 QERLAKLDLERQRLQLGLREAKLASVQQQGKWVEAQIVA------LASEQTDRGLVMTLG 154

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLS 288
           D     +FD   +           K+ + L  +   +  I G+TD++       DN +LS
Sbjct: 155 D----VLFDTGEADLKNSASRTALKLVQFLQLNPRRVVRIEGYTDST---GNPEDNLKLS 207

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            DRA +   +L+  GV E RI ++ G+         AS+   + NRR++I+  D +G
Sbjct: 208 RDRAQAVADMLVDLGVDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFSDDKG 263


>gi|206558755|ref|YP_002229515.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
 gi|198034792|emb|CAR50659.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
          Length = 316

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 93/269 (34%), Gaps = 18/269 (6%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T +     + NP    +   +       +T    +   G      +          L   
Sbjct: 50  TVATTALPQANPNAGGASGTVVHGTAGTLTPPPANAAPGQVVVGGKVPDEATKAAVLQKL 109

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192
           + +    N + +   +  D+    +   ++ K     L  +SK ++     +  +     
Sbjct: 110 RDTYGATNVVDQI--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167

Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P+  
Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++L ++   LA      + I GHTD          N  LS  RA +    L+   +   +
Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQ 283

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335
           ++  +G    +    +D     + NRRI+
Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311


>gi|311106822|ref|YP_003979675.1| OmpA family protein 2 [Achromobacter xylosoxidans A8]
 gi|310761511|gb|ADP16960.1| OmpA family protein 2 [Achromobacter xylosoxidans A8]
          Length = 216

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246
           ++S+ L   V    V+    ET    +        +++ID R     + +F  +S    P
Sbjct: 43  QLSTQLEEEVKQRQVETQRRETLEQALAGPLAAGRVTLIDGRIGISGSVLFALNSDQLQP 102

Query: 247 ETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ + E L        E++ + G+TD    R   R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLIEPLSAYLKSHNEILMVSGYTDDQQVREGNRRFADNWDLSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           +  GV    +   + F   +   A+  +   + NRR++I
Sbjct: 163 IDEGVPSSAVFAAA-FGSEQPVAANTDEEGRAKNRRVEI 200


>gi|170703211|ref|ZP_02894016.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170131877|gb|EDT00400.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 214

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   LA       E++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPEGRDLLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRKFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|315607338|ref|ZP_07882338.1| OmpA family protein [Prevotella buccae ATCC 33574]
 gi|315251041|gb|EFU31030.1| OmpA family protein [Prevotella buccae ATCC 33574]
          Length = 284

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V  +  +  + IS+ D     ++   S          L KI ++
Sbjct: 121 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAEETLSKIAKI 177

Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           +       + I G+TD  P    +      R+NW LS  RA S  Q L  + GV   R++
Sbjct: 178 IMDYKDYEVLIEGNTDNVPVNTDSPKMKNIRNNWDLSALRASSVVQYLQNRYGVDPKRLT 237

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              G   +     +        NRR  I++  +
Sbjct: 238 A-GGRGEYNPVATNSTELGKQRNRRTQIIITPK 269


>gi|254246487|ref|ZP_04939808.1| OmpA/MotB [Burkholderia cenocepacia PC184]
 gi|124871263|gb|EAY62979.1| OmpA/MotB [Burkholderia cenocepacia PC184]
          Length = 316

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T +     + NP    +   +       I     +   G      +          L   
Sbjct: 50  TVATTALPQANPNAGGASGTVVHGTAGSIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192
           + +    N + +   +  D+    +   ++ K     L  +SK ++     +  +     
Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167

Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P+  
Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++L ++   LA      + I GHTD          N  LS  RA +    L+   +   +
Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKNIPPQQ 283

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335
           ++  +G    +    +D     + NRRI+
Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311


>gi|308274998|emb|CBX31597.1| hypothetical protein N47_E51090 [uncultured Desulfobacterium sp.]
          Length = 315

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 13/224 (5%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           + ++  +  N I   S S +++         +++          +    + +        
Sbjct: 96  EVERLNQERNRILMESRSLEAKQANIKADASTKEANQAKMMAIEKAQQLEIKQQEALEQM 155

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           K+  LA +  + +   A++     + L A+  +  +  + T  GI++++ D     +F  
Sbjct: 156 KKLELAKQESQAMSLEAEQARKKAAELKAE--IDKLQAKQTDRGIVLTLGD----VLFAN 209

Query: 240 SSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           + +   P  +  + ++ E L  H+  ++ I GHTD+   R     N  LS  RA +    
Sbjct: 210 NKANLQPGAMRTIDQLAEFLKKHAERMVVIEGHTDS---RGSDTYNLGLSQRRADAVRDA 266

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           L+  G+ + RI  I G        ++D       NRR++I++ +
Sbjct: 267 LVARGIDQARIQTI-GKGEVYPVASNDTSAGRQQNRRVEIIISN 309


>gi|170731810|ref|YP_001763757.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169815052|gb|ACA89635.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 316

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T +     + NP    +   +       I     +   G      +          L   
Sbjct: 50  TVATTALPQANPNAGGASGTVVHGTAGTIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192
           + +    N + +   +  D+    +   ++ K     L  +SK ++     +  +     
Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167

Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P+  
Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++L ++   LA      + I GHTD          N  LS  RA +    L+   +   +
Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKNIPPQQ 283

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335
           ++  +G    +    +D     + NRRI+
Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311


>gi|323528476|ref|YP_004230628.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323385478|gb|ADX57568.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 217

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + L  +   TL   +A  +  G +         I I       +
Sbjct: 42  GVQLELSNKLEQEVKQRQLETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+     + +++ + G TD    R   R   DNW LS 
Sbjct: 96  FALNSDQLQPQGRDLLKSLAGPLSAYLRANDQLLMVSGFTDDQRLREGNRRFADNWELSA 155

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+ +GV    +   + G A      A +   + NRR++I
Sbjct: 156 QRALTVTRALIDAGVPASSVFAAAFGSAQPVSSNADEQGRARNRRVEI 203


>gi|270047795|pdb|3KHN|A Chain A, Crystal Structure Of Putative Motb Like Protein Dvu_2228
           From Desulfovibrio Vulgaris.
 gi|270047796|pdb|3KHN|B Chain B, Crystal Structure Of Putative Motb Like Protein Dvu_2228
           From Desulfovibrio Vulgaris
          Length = 174

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 71/165 (43%), Gaps = 8/165 (4%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
            +  ++ ++ L +  ++  +        N V+GV+      G++   +   +  +F   +
Sbjct: 2   SLETVRLQRELIEAQRQTYNEXRTYFTVNGVEGVIGAVFDEGVITLRV--PSEVLFAPGA 59

Query: 242 SIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298
               P    VL  + ++ +    + I+I+G TD       AR  DNW +S  R+ +  + 
Sbjct: 60  VELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRY 119

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            + +G+   R++  +G         +  D   + NRR++ ++E R
Sbjct: 120 FLGAGIEPARLTA-TGLGELDPLFPNTSDENRARNRRVEFVLERR 163


>gi|332291485|ref|YP_004430094.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169571|gb|AEE18826.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 293

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 19/236 (8%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           +K++ +     I    +   ++      T    +  +  K           EN      +
Sbjct: 49  EKEEIEAKYAAIEQRVDDYNTKINSLRDTNVDLQASNDAKFEITTNGTVMSENTKQKLRA 108

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV---------LFETTRTGILISIID 230
               +      + Q L   ++  +S  +  N+ K +           +   T + ISI D
Sbjct: 109 ALANVDPSELAQAQTLEDSMNLAVSHKLKRNLNKDIYGANALDDINIDIDDTVVQISISD 168

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRL 287
           +    +F   S     E   +L++I  V+       + + GHTD+   +  +   DNW L
Sbjct: 169 KM---LFRSGSYRVSKEADALLRRIAAVVNSEPAVEVMVEGHTDSRTVKKGSYLKDNWDL 225

Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           S+ RA +  + L  K  V   ++   SG + +   + +D     S NRR  IL+  
Sbjct: 226 SVQRATAIVRELQTKHNVDPSKLIA-SGRSSYVPLVENDSKENMSRNRRTRILILP 280


>gi|218516717|ref|ZP_03513557.1| flagellar motor protein MotB [Rhizobium etli 8C-3]
          Length = 89

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 1  MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
          M+   + +   ++ II+K+    D    + G+WKI YADFMT +MAFFLVMW++NA +++
Sbjct: 1  MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60

Query: 61 TKKAIEQYFNPFG 73
          TK A+  YFNP  
Sbjct: 61 TKAAVATYFNPIK 73


>gi|328946962|ref|YP_004364299.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
 gi|328447286|gb|AEB13002.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
          Length = 488

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 13/234 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
               ++ S ++K+  + LE  +   S  +  +    S+ ++    +    S        K
Sbjct: 265 PALQRVASVSEKEIKEILEKPVNESSWIESEKKSSGSIEKNDF--ESGANSRRNNSYAEK 322

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +           K    K+K    ++  KIS+  +        K V+ E T  GI +++ 
Sbjct: 323 KIAKNENQTYGAKNHPQKKKDSADEIQSKISAGKNSSSNSKSEKKVIVENTAAGIRLTMQ 382

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLS 288
           +      F   SS  LP     L +I +VL    + +  + GHT +  +        +LS
Sbjct: 383 NLN----FKPDSSELLPGENERLDQIAQVLKEVPDQMFLVEGHTASVGYEKGEM---KLS 435

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           ++RA S    L++ G+  ++     G    +    +      + NRR++I + +
Sbjct: 436 VERANSVANALIQRGIPREKFI-CKGSGGTKPIADNSTPEGKAKNRRVEITILE 488


>gi|238783322|ref|ZP_04627346.1| hypothetical protein yberc0001_32980 [Yersinia bercovieri ATCC
           43970]
 gi|238715745|gb|EEQ07733.1| hypothetical protein yberc0001_32980 [Yersinia bercovieri ATCC
           43970]
          Length = 403

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L+  + + I  G++   T      S+I  R   +FD       P    V+  IG  L  
Sbjct: 252 NLANFLQEEIASGMVVVRTDDKQ--SVIALRGDGLFDSGMITIRPAYNQVINHIGNALNG 309

Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +  I + G++D  P R +    N  LSL RA +    L K  +   +  K  G      
Sbjct: 310 VSGKIMVTGYSDNVPIRKSTFTSNSALSLARANAVGSQLQKY-LDSAQRVKTEGRGEANP 368

Query: 321 KIASDPM--NSANRRIDILVE 339
              +D     + NRR++I + 
Sbjct: 369 VAPNDSKKDRALNRRVEITLL 389


>gi|296159938|ref|ZP_06842759.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295889921|gb|EFG69718.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 87/272 (31%), Gaps = 12/272 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +    + G           +      +I       +          K   +  +  
Sbjct: 47  PPASSAPVGNAGPAVNTAGLASGTTGAGTGAITAAPPPANATPGQVVVGGKVPDEATKAA 106

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +                   ++       S +++K I  +         K     +  K 
Sbjct: 107 VLARLRDTYGAANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 166

Query: 191 RL--QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +  +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P
Sbjct: 167 EVHNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 225

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +   +L ++   +   T   ++I GHTD          N  LS  RA +    L+  G+ 
Sbjct: 226 QGRAILDQMAAAMMKMTNKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 282

Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRID 335
             +++  +G    +   ++D     + NRRI+
Sbjct: 283 PQQMT-TTGVGPDQPIASNDTTDGRARNRRIE 313


>gi|170696413|ref|ZP_02887541.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170138674|gb|EDT06874.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 322

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 91/272 (33%), Gaps = 12/272 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +    S G           +      ++       +          K   +  +  
Sbjct: 51  PSPSSTTAGSAGPAVNTAGLASGTTGAGTGAVTASPPPANAAPGQVVVGGKVPDEATKAA 110

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK--EKILAMKR 188
           +                   ++       S +++K I  +         K     + +K 
Sbjct: 111 VLARLRDTYGSANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 170

Query: 189 KKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + R +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P
Sbjct: 171 EVRNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 229

Query: 247 ETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +   +L ++   +L  +T+ ++I GHTD          N  LS  RA +    L+  G+ 
Sbjct: 230 QGRAILDQMAAAMLKMATKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 286

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRID 335
             ++   +G    +   ++D     + NRRI+
Sbjct: 287 PQQM-STTGVGPDQPIASNDTADGRARNRRIE 317


>gi|238026069|ref|YP_002910300.1| OmpA/MotB [Burkholderia glumae BGR1]
 gi|237875263|gb|ACR27596.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 355

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 93/276 (33%), Gaps = 16/276 (5%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P  +   + +  +    N    +    +  +                       +  +  
Sbjct: 80  PQAEGGTSQNGTVLTGTNVAGGTGAGPVTGAGTGATVSVPPQASATPGQVVVGGKVPDEA 139

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI------L 184
                  +  +        D  +  D+    +   ++ K     L  +SK ++      +
Sbjct: 140 TKAAVLQKLRDTYGAGNVVDQIEVGDVATPPNWSSNVQKLIGPQLKQISKGQLRIDGTSI 199

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            +K + R + L ++++S ++  +     I   +    +  G+L   +  R    F+  S+
Sbjct: 200 DVKGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGLLDQTLANRTIE-FETGSA 258

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
              P+   +L ++   ++      ++I GHTD          N  LS  RA +    L+ 
Sbjct: 259 TLTPQGRAILDQMAAAMSRMANRSVAIIGHTDN---SGNRASNIALSQARADAVKGYLVA 315

Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            G+   ++   +G    +   ++D     + NRRI+
Sbjct: 316 KGIPSQQL-STTGVGPDQPIASNDTAEGRARNRRIE 350


>gi|332528097|ref|ZP_08404128.1| hypothetical protein RBXJA2T_19116 [Rubrivivax benzoatilyticus JA2]
 gi|332112668|gb|EGJ12461.1| hypothetical protein RBXJA2T_19116 [Rubrivivax benzoatilyticus JA2]
          Length = 215

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 19/176 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L++     +++++      + +   L+  +A           T  G  I I       +
Sbjct: 45  DLAERLRAEVQQRQAEAQRREALEHALAVPLAAG-------RVTLAGGRIGIS---GNVL 94

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR----DNWRLS 288
           F  +S+   PE   +L+ +   LA       EV+ + G TD    R+  R    DNW LS
Sbjct: 95  FAFNSAELQPEGRQLLKSLAGPLAAYLSARDEVLMVSGFTDDRQVRDGGRARFADNWELS 154

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRIDILVEDRQG 343
             RA +  + L++ GV    +   +  A   +   +D    + NRR++I    R+ 
Sbjct: 155 AQRALTVTRALIEDGVPSSAVFAAAFGAEQPVASNADAAGRALNRRVEIAPTPRRA 210


>gi|258647767|ref|ZP_05735236.1| OmpA family protein [Prevotella tannerae ATCC 51259]
 gi|260852625|gb|EEX72494.1| OmpA family protein [Prevotella tannerae ATCC 51259]
          Length = 288

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 97/247 (39%), Gaps = 16/247 (6%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
           T  + +  +   N++ + Q  E N    +   +    +  +    +  + L  S D    
Sbjct: 28  TLRNENAALRQANEEGRIQLAECNANTDNLRNRLSDEQRRVDDLRKDYQLLQGSLDKSLQ 87

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFET 219
            N + +  +  L  E   + +  K+L +   K       +++ L+  ++++ ++ V  + 
Sbjct: 88  QNSQGSINISKLVDEINASNRFIKQLVEAKSKSDSLNMVLTNNLTRSLSNDELREVDVKV 147

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPF- 277
            +  + IS+ D     ++   S          L KI +++       + + G+TD  P  
Sbjct: 148 LKGVVYISLADNM---LYKSGSYEINSRAKETLSKIAKIIKDYRDYDVLVEGNTDPVPIT 204

Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           R   R+NW LS  RA S    L    GV+  R++  +G   +     ++       NRR 
Sbjct: 205 RTNIRNNWDLSCLRASSVVLALQNDYGVNPARLTA-AGRGEYNPVTTNETEVGKQRNRRT 263

Query: 335 DILVEDR 341
            I++  +
Sbjct: 264 QIIITPK 270


>gi|51598540|ref|YP_072728.1| flagellar motor protein MotB [Borrelia garinii PBi]
 gi|51573111|gb|AAU07136.1| flagellar motor rotation protein B [Borrelia garinii PBi]
          Length = 260

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      + NW LS  R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V+  +   ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVNSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          +             + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 4  RVKKPSKCDEGTPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|242309734|ref|ZP_04808889.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489]
 gi|239523735|gb|EEQ63601.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489]
          Length = 258

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 12/192 (6%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G        LEK +  + N   P +    I A      + ++   + +  + +       
Sbjct: 52  GSLEGSFAVLEKGLRTQINPPQP-IQATPIQAETEMDNVMNIFASLITEYNEINKLANGP 110

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIR--G 270
            V FE    GI+I I       +F+  S+       I  L++I   L H  + I I+  G
Sbjct: 111 AVEFEEAEKGIIIRI---PEDLLFESGSATLSNSNGITFLKRISLELNHLPKEILIKAIG 167

Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326
           HTD +P +      DN  LS+ R  +   +L+  G+ ++RI    G         +D   
Sbjct: 168 HTDNTPMKKNATFADNLELSIARGVNVANLLISQGIDKERIIG-GGEGEFSPIANNDIPE 226

Query: 327 MNSANRRIDILV 338
           + + NRR+D+ V
Sbjct: 227 LRAKNRRVDLYV 238


>gi|260898695|ref|ZP_05907191.1| flagellar motor protein MotB [Vibrio parahaemolyticus Peru-466]
 gi|308086893|gb|EFO36588.1| flagellar motor protein MotB [Vibrio parahaemolyticus Peru-466]
          Length = 155

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74
             D  P  L  W   +AD M++LM FF+++   +  D    K I           N    
Sbjct: 7   KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132
             +     I  ++  P R     ID+ + +   IT+ +++   G +++    +R E  + 
Sbjct: 67  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126

Query: 133 YLSNSQQSEHCKNSLTRD 150
              + + S     S   D
Sbjct: 127 GGQSPETSTQSNQSAESD 144


>gi|152984892|ref|YP_001347626.1| outer membrane protein [Pseudomonas aeruginosa PA7]
 gi|150960050|gb|ABR82075.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
          Length = 269

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +    +            L  +R +     AK +S    G      +  +  E T  
Sbjct: 88  SEIARQHAQLNLNQERLVRLQLERERLQLALREAKLLSVQEQGQRLSEEIASLSTEETER 147

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G+++++ D     +FD + +   P       K+ + L  +    I I G+TD+       
Sbjct: 148 GLVLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDR 200

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           + N  LS  RA +   VL   GV   R+ +++G+         AS+   + NRR++I+  
Sbjct: 201 QANLDLSRARAQAVADVLADLGVDPARM-QVAGYGEAFPVTDNASNRGRAQNRRVEIVFS 259

Query: 340 DRQG 343
           + +G
Sbjct: 260 NDKG 263


>gi|66770081|ref|YP_244843.1| hypothetical protein XC_3783 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|77747955|ref|NP_639058.2| hypothetical protein XCC3712 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188993294|ref|YP_001905304.1| hypothetical protein xccb100_3899 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66575413|gb|AAY50823.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167735054|emb|CAP53266.1| OmpA family protein [Xanthomonas campestris pv. campestris]
          Length = 215

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+  +A           T     I I   R + +
Sbjct: 43  QLSSRLDDEVKQRQAEAQRRKTLEQALAAPLAAG-------RVTLVNGRIGI---RGSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   VL+ +   L+       E++ I G TD  P  +  R   DNW LS 
Sbjct: 93  FALNSDQLQPEGREVLKSLAAPLSEYLVSREEILMISGFTDDRPVLDSNRRYADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + F   +     A +   + NRR++I
Sbjct: 153 QRALTVTRALIAEGVPASSVFAAA-FGSQQPVDSNADETRRAKNRRVEI 200


>gi|323700140|ref|ZP_08112052.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323460072|gb|EGB15937.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 273

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L  L  +N+ + + F ++R    + I+    + +F        PE    L +   +L 
Sbjct: 86  EPLQSLKWENVSQDINFSSSRF---VQILSINASLLFGPDGYTLSPEGRATLDRFLPLLE 142

Query: 261 HSTEVISIRGHTDA---------SPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRI 309
                + + GHT            P  +    +  W+LSL+R  + Y+ L+  G+S D +
Sbjct: 143 QVKYPLLLAGHTSDLRDELGMNYQPGDDSRNPDLSWKLSLNRTLAIYRYLLDKGMSPD-M 201

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            ++ GF  +R     D     + NRR+DI+++ R
Sbjct: 202 LRVEGFGKYRPHYPPDTPENRARNRRVDIVLDKR 235



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKNL 76
           KKK   +     +  W + +AD MT+++ FF+++  +   D      A+      FG N 
Sbjct: 3   KKKQKRNCEE--MPLWMVTFADCMTLMLTFFILLVSMATIDQRRKLVALGSIIGTFGFNQ 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHI 106
             A    F +++  +      ID    E +
Sbjct: 61  --AGYDTFSQKDTKKTVEPGPIDTGDLEPL 88


>gi|298293019|ref|YP_003694958.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
 gi|296929530|gb|ADH90339.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
          Length = 344

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 108/277 (38%), Gaps = 28/277 (10%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D ++  +  +     L +++            ++ ++    +  +        Q+ +   
Sbjct: 76  DSESESQMGALRASLLRLEQERDALQAAATAVASPEEIAAAQARSADLARELGQEKDAAA 135

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            +  + +   + +        ++ ++       L   +    + + RL DL ++++  L+
Sbjct: 136 QAAAQIAILNQQIA-------ALRRQIAALEQALDISEQKDKESQSRLADLGRRLNVALA 188

Query: 205 GLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             V +           ++ +L +     I+      ++   FD++S+   P+ +  L K+
Sbjct: 189 QRVQELTRYRSEFFGRLRAILGDRPDVRIVGDRFVFQSEIFFDRASADLRPDAMPALDKL 248

Query: 256 GEVL--------AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306
            E L        +  + V+ + GHTD  P    +   NW+LS  R+ +  Q L   GVS 
Sbjct: 249 AEALVALEKEIPSDISWVLRVDGHTDNRPIATPLFPSNWQLSAARSIAVVQYLAGKGVSP 308

Query: 307 DRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
             +   +GF  ++      SD   + NRRI++ + +R
Sbjct: 309 QHLVA-AGFGEYQPIDDADSDDARARNRRIELKLTER 344


>gi|217979014|ref|YP_002363161.1| type VI secretion system OmpA/MotB family protein [Methylocella
           silvestris BL2]
 gi|217504390|gb|ACK51799.1| type VI secretion system OmpA/MotB family protein [Methylocella
           silvestris BL2]
          Length = 493

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +  ++A NI  G +  + T   I+I IID     +F    S  L +   ++  I   L  
Sbjct: 354 VRNVLAPNIQSGALSVDATANQIVIRIID---RALFQPGKSTMLDDVKPLMMYIAMALDD 410

Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
               + + GH+D +P  N     N+ LSL+RA     +L +S    +R+    G      
Sbjct: 411 DRGAVKVIGHSDNTPISNARFASNFELSLERANVVGALLKQSLSHPERVE-TEGKGADAP 469

Query: 321 KIASDP--MNSANRRIDILV 338
              +D     + NRR++I+V
Sbjct: 470 IAPNDTPEGRAKNRRVEIVV 489


>gi|330973477|gb|EGH73543.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 271

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 100/246 (40%), Gaps = 12/246 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K    +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKTDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             ++N +LS DRA +   VLM  G+ E RI  + G+       A+  +   + NRR++I+
Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGIDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259

Query: 338 VEDRQG 343
             D +G
Sbjct: 260 FSDEKG 265


>gi|268679796|ref|YP_003304227.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617827|gb|ACZ12192.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 266

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 118/325 (36%), Gaps = 93/325 (28%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK            W + YADF+++L+A F+ ++ + + + +  KA+++ F       
Sbjct: 1   MGKKKCKPTECPAGEKWAVPYADFLSLLLALFIALYALASVNTEKMKALKEEF------- 53

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 I+D    PE ++                                +  N+     
Sbjct: 54  ----VKIYDYSAKPEETTP------------------------------VMNLNVKSGDA 79

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            ++ E  K ++   S + +++ +   + + ++  E                       L 
Sbjct: 80  GKEKEKDKGNVGGMSAQLEEIARMAQMIEKMSLGEGS---------------------LD 118

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +KI   +  L    +      E T            ++ +F              L++I 
Sbjct: 119 QKIDGAIFKLPTKMLFAPGSAEIT----------NSDSMLF--------------LKRIS 154

Query: 257 EVLAHST--EVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +++        + ++G TD +P    +  +DN  LS  RA +  +VL+++G++++R+S  
Sbjct: 155 DIITMLPQNVDVVVKGFTDTTPPPRGSKYQDNLELSSARANAVIRVLIRNGIAKERLSS- 213

Query: 313 SGFAHHRLKIASDP--MNSANRRID 335
           +G+   +   ++D       N R++
Sbjct: 214 AGYGDTKAIASNDTDEGREKNSRVE 238


>gi|115360144|ref|YP_777282.1| hypothetical protein Bamb_5401 [Burkholderia ambifaria AMMD]
 gi|115285432|gb|ABI90948.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 214

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       E++ I G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPDGRDLLKTLAGPLAAYLTTRDEILMISGFADDQQVRAGNRQFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|119385179|ref|YP_916235.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374946|gb|ABL70539.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 463

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF-- 277
           G+++ ++   +  +F  + +   P    +++ IG  +   AH    +++ GHTD  P   
Sbjct: 338 GLVVLVVRASDPEVFRSAKASLNPAYQPLVEAIGRTVVANAHRIGAVAVSGHTDNVPVQR 397

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            N    N  LS  RA +  Q L  +GV  + +    G A  +     A+    + NRRI+
Sbjct: 398 SNPFASNQGLSEARAETVAQALAAAGVPAE-LISAEGRADSQPVGDNATRDGRAQNRRIE 456

Query: 336 ILVEDRQ 342
           I +E RQ
Sbjct: 457 IRIEKRQ 463


>gi|116327052|ref|YP_796772.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332289|ref|YP_802007.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116119796|gb|ABJ77839.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116125978|gb|ABJ77249.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 458

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 96/276 (34%), Gaps = 25/276 (9%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +Y      +     +GI  +     R               +  +       N   Q   
Sbjct: 201 EYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQYKRVQLTYTFIYANGTAQEMS 260

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            + +  Y  N + ++  K+    +  K       T +E    ++++   P  +       
Sbjct: 261 FDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESGSEQKKSSNPPRETLSWPEEE 320

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           + K + + +       +SG         V    T  GI IS+    N+ +FD +SS    
Sbjct: 321 ENKTKQETMK------VSGSP-------VEIRRTEEGIAISL----NSVLFDYNSSQLKD 363

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
           E  + L++I  VL    +  I I GHTD          N +LS +RA S  + L    G+
Sbjct: 364 EAKLELRRIASVLKKYGDREIRISGHTDN---SGGDEYNRKLSRERALSVLKELRDEQGL 420

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            E R+    G+   +    +        NRR+DI +
Sbjct: 421 EEKRM-SYEGYGKSKPIADNSTAQGRQKNRRVDITI 455


>gi|309779564|ref|ZP_07674325.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921805|gb|EFP67441.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 217

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +K+++      K +   L+G +A           T     I I       +
Sbjct: 43  ELSSKLENEVKQREAEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGI---NGNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +++ +   LA       E++ + G +D    R   R   DNW LS 
Sbjct: 93  FAINSDQLQPEGRALMKSLAGPLAAYLTSREEILMVSGFSDDQQVRAGNRLFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            RA +  + L+  G+    +   + F   +     A D   + NRR++I    RQ 
Sbjct: 153 KRALTVTRALIDEGIPASSVFAAA-FGSQQPVSSNADDVGRAKNRRVEIAPVPRQA 207


>gi|120435916|ref|YP_861602.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578066|emb|CAL66535.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 281

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 18/252 (7%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           +S  +++          ST QK + ++ E    Y    ++       +     + + + +
Sbjct: 19  VSKKKYVALEGELNDTRSTLQKTRVEKEEIEEKYARIEERVADYNAKINSLRTENEGMME 78

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG----- 214
             DL       +N     ++K     +K  K L+D    I+  +S  +  NI +G     
Sbjct: 79  MNDLTVMSKNTKNKMKNTIAKMDPEKVKGAKTLED---SINLAVSYNLKQNISEGADEDD 135

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           +      T ++I++ D     +F   S     E   +L+K+ EV+       + I GHTD
Sbjct: 136 IDISVDETVVMINVSD---KLLFGSGSYRVTGEAQPLLKKLAEVINSEPAMEVMIEGHTD 192

Query: 274 ASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMN 328
                  +   DNW LS+ RA S  +VL     V   ++   +G + ++  +  ++    
Sbjct: 193 DRTMVTESYLKDNWDLSVRRATSIVRVLQDKYNVEPSKLIA-AGRSSYQPLVENSNKDNM 251

Query: 329 SANRRIDILVED 340
           + NRR  I++  
Sbjct: 252 AKNRRTRIVIIP 263


>gi|90420689|ref|ZP_01228595.1| outer membrane protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90334980|gb|EAS48741.1| outer membrane protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 220

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268
           + ++G     TR G  I I++  +   F    S  LP     L  +  VL    + I ++
Sbjct: 88  DQLRGTGVSVTRVGDRI-ILNMPSNITFPTDQSSILPAFYPTLNSVALVLKEYDKSIVNV 146

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327
            GHTD+         N+ LS  RA S  Q+L   GV   R++   GF   +   ++D   
Sbjct: 147 YGHTDSQ---GSDGYNFTLSQQRASSVSQLLASQGVDPRRLN-TQGFGESQPVASNDTES 202

Query: 328 -NSANRRIDILV 338
             + NRR++I +
Sbjct: 203 GRAQNRRVEIAI 214


>gi|325913887|ref|ZP_08176246.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325539962|gb|EGD11599.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 221

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDQEVKQRQAEAQRRKTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +   LA       E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLAAPLAQYLSAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IADGVPAASVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|253701833|ref|YP_003023022.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251776683|gb|ACT19264.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 228

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E  R G  +  +   +  +FD    +  P+    L +    L  S   I+I GHTD++  
Sbjct: 97  EVVRDGDKV-YVALPSGILFDVGKDVLKPDAKDSLSRAAATLKDSQTTITIEGHTDST-- 153

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
                 N  LS  RA      L+  GV   +++ I G+   R  + +  D   + NRR+ 
Sbjct: 154 -GSNAINQPLSERRANRVRDYLVSQGVPGAKMAAI-GYGSSRPAVPNDSDANRALNRRVQ 211

Query: 336 ILVEDRQ 342
           I +   +
Sbjct: 212 IELTPNE 218


>gi|219684669|ref|ZP_03539612.1| flagellar motor apparatus [Borrelia garinii PBr]
 gi|219672031|gb|EED29085.1| flagellar motor apparatus [Borrelia garinii PBr]
          Length = 260

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      + NW LS  R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   +   ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          +             + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 4  RVKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|262198074|ref|YP_003269283.1| hypothetical protein Hoch_4901 [Haliangium ochraceum DSM 14365]
 gi|262081421|gb|ACY17390.1| Myxococcales GC_trans_RRR domain protein [Haliangium ochraceum DSM
            14365]
          Length = 1987

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 19/271 (7%)

Query: 81   KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
             G  DE   P+  + +   +   E    +  + K G  ++      L +        +  
Sbjct: 1689 DGYQDEDGVPDPDNDD-DGIPDTEEACPDEPENKNGYQDEDGCPDELPDTDGDGHVDRVD 1747

Query: 141  EHCKNSLTRDSEKGKDLCKSTDLEK-----SINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            E  +     D  + +D C   D ++     S +K  N   P  ++      +    + D 
Sbjct: 1748 ECPEQPEDMDGFEDEDGCPDEDNDEDGVVDSADKCPNEAGPVENRGCPDTDRDGDGVVDR 1807

Query: 196  AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
                             +      +  G  + I+D      F  + ++    +  +LQ +
Sbjct: 1808 LDNCPDEAGSERNQGCKRRQRVRLS--GDRLEILD---RVYFRSNRAVLQRRSNPLLQNV 1862

Query: 256  GEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             +VL    E   + + GHTD    R     N  LS  RA +    L++ GV   R++ + 
Sbjct: 1863 AQVLIAHPEIEHVRVEGHTDN---RGDPTYNMNLSQSRAEAVVAFLVQEGVEAKRLAAV- 1918

Query: 314  GFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            GF   +    +      +ANRR++  +   +
Sbjct: 1919 GFGETQPLEDNKTRRGRAANRRVEFNILWDK 1949


>gi|83644388|ref|YP_432823.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83632431|gb|ABC28398.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 219

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G      R G  I+++       FD   +         L  +G VL    + +I + G
Sbjct: 90  LEGTGVRVVRNGDEITLV-MPGNITFDTGRAEVKANFYDTLDSVGLVLKEFDKTIIQVSG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD++        N RLS  RA S  + L+  GV   R+  I G+        +      
Sbjct: 149 HTDST---GSLDLNQRLSEQRAGSVGRYLISQGVLSSRVQTI-GYGPRYPVATNSTTEGR 204

Query: 329 SANRRIDILVEDRQG 343
           +ANRR+++ +   QG
Sbjct: 205 AANRRVELKLVPMQG 219


>gi|292490769|ref|YP_003526208.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291579364|gb|ADE13821.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 301

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE   +L +  + L    +  ++I GHTD+    N    N RLS  RA +A
Sbjct: 199 FAFDSAKLTPEARDILDETADSLRTHPDLEVTIEGHTDS--VGNADY-NKRLSQLRAEAA 255

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L+  GV + R+  + G+   +   ++      + NRR+++
Sbjct: 256 MNYLVSQGVDQSRLEAV-GYGEAQPIASNKTKEGRAQNRRVEL 297


>gi|325529870|gb|EGD06709.1| hypothetical protein B1M_00030 [Burkholderia sp. TJI49]
          Length = 214

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   LA       E++ I G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPEGRDLLKTLAGPLAAYLKTRDEILMISGFADDQQVRAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I
Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 199


>gi|187919198|ref|YP_001888229.1| hypothetical protein Bphyt_4485 [Burkholderia phytofirmans PsJN]
 gi|187717636|gb|ACD18859.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 215

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + L  +   TL   +A  +  G +         I I       +
Sbjct: 39  GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+     + E++ + G TD    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPQGRDLLKSLAGPLSAYLGANDEILMVSGFTDDQRLREGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + G          +   + NRR++I
Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNTDEQGRAKNRRVEI 200


>gi|86138055|ref|ZP_01056630.1| hypothetical protein MED193_00970 [Roseobacter sp. MED193]
 gi|85825082|gb|EAQ45282.1| hypothetical protein MED193_00970 [Roseobacter sp. MED193]
          Length = 477

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + L++   K++  L   + + IV+      T       II    + MF   S        
Sbjct: 327 QTLEEQVAKVADFLGPEIDEGIVQVFQKGNT------LIIRLAGSGMFGSGSDQLSKAFK 380

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             + ++ E L      + + GH+D  P R+     N  LSL RA S    + +     DR
Sbjct: 381 TPVARVAEALNDEKGQVIVAGHSDNVPIRSSRFPSNMALSLARAKSVMSGMAQVFDDPDR 440

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +S   G A       +      + NRRI+IL+
Sbjct: 441 LSA-EGRAEKEPIADNGTKAGRAKNRRIEILL 471


>gi|219685751|ref|ZP_03540562.1| flagellar motor apparatus [Borrelia garinii Far04]
 gi|219672690|gb|EED29718.1| flagellar motor apparatus [Borrelia garinii Far04]
          Length = 260

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      + NW LS  R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   +   ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          +             + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 4  RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|171319197|ref|ZP_02908315.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171095577|gb|EDT40539.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 214

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   LA       E++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPEGRDLLKTLAGPLAAYLTTRDEILMVSGFADDQQVRAGNRQFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|124006808|ref|ZP_01691638.1| OmpA domain protein [Microscilla marina ATCC 23134]
 gi|123987489|gb|EAY27198.1| OmpA domain protein [Microscilla marina ATCC 23134]
          Length = 570

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +    E+I  L+ I  ++        +I GH+D       A +N RLS  RA S 
Sbjct: 468 FASGKTTINDESIPDLKAILAIMKKYPKNKFNIEGHSDNV---GNAANNLRLSQQRANSV 524

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            Q  + +G++  R+    G+   R ++++        NRRI++LV
Sbjct: 525 RQYFVNNGIAASRLIA-KGYGQTRPEVSNATAAGRKKNRRIEVLV 568


>gi|78065049|ref|YP_367818.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77965794|gb|ABB07174.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 320

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 92/277 (33%), Gaps = 16/277 (5%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P G   +  +    +    P  +S   +  +     T                 +  + 
Sbjct: 44  TPVGNGTVATTALSANTGAAPGTASGAVVHGTAGTANTLTPPPATATPGQVVVGGKVPDE 103

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   +  +    +   D  +  D+    +   ++ K     L  +SK ++     +
Sbjct: 104 ATKAAVLQKLRDTYGATNVVDQIEVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQ 163

Query: 190 KRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             +      +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S
Sbjct: 164 IEMKGEVHNEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGS 222

Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   P+  ++L ++   LA      + I GHTD          N  LS  RA +    L+
Sbjct: 223 ATLTPQGRLILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLI 279

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              +   +++  +G    +    +D     + NRRI+
Sbjct: 280 TKSILPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 315


>gi|225375333|ref|ZP_03752554.1| hypothetical protein ROSEINA2194_00958 [Roseburia inulinivorans DSM
           16841]
 gi|225212822|gb|EEG95176.1| hypothetical protein ROSEINA2194_00958 [Roseburia inulinivorans DSM
           16841]
          Length = 270

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 114/327 (34%), Gaps = 72/327 (22%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +   ++ P    +W   ++D M +L+ FF++++ ++  D +  + +          L + 
Sbjct: 3   RKKTEEAPAGAPAWMATFSDLMNLLLCFFVLLFSMSTVDAEKFEMVIASLQSSFSILPSG 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
              I D                              G        Q    +I+Y   +  
Sbjct: 63  GASIGD------------------------------GEMVSSGVSQLQMYDIYYNQMA-- 90

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                     +++   D  +S+D+ +   +E              A+   +++ +  + +
Sbjct: 91  ----------NTQTTDDTSESSDVAEEYKEE--------------ALAESEQMAEQVQDL 126

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +         I   V  +     +L+++       +FD   S    E   ++ KIG++L
Sbjct: 127 VAQY------GIQDQVEIDFNAEYVLLNL---NGAVLFDSGKSEIKSEAYPLMDKIGKIL 177

Query: 260 -AHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315
            ++   +I I GHTD  PF   +   +N  LS+ RA      +   + +    I   SG 
Sbjct: 178 QSYQQNMIEIEGHTDNIPFTHSSKYENNDVLSMYRALYVADYMRNITTIDPSHIKS-SGR 236

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
             +     +      + NRR++I + +
Sbjct: 237 GEYVPIADNSTPEGRARNRRVEIKIYN 263


>gi|332828855|gb|EGK01538.1| hypothetical protein HMPREF9455_02070 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 290

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
            D + G    ++   R+ +    L  +QQ+     +   + +   +   +   + ++N  
Sbjct: 38  NDYQEGQLQLRESKTRVASLEDRLREAQQNNADLRAAYAELQNSLNKSLAQSSQGNVNIA 97

Query: 171 ENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           +       S   I  +   K   D L   + + L+  ++ + ++ +  +  +  + IS+ 
Sbjct: 98  KLLDEINASNRFIQHLVEAKNKSDSLNLVMVNNLTRSLSRSEMQDLDIKVLKGVVYISLA 157

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIA-RDNWRL 287
           D     ++   S     +   +L KI ++ L +    + + G+TD  P      R+NW L
Sbjct: 158 DNM---LYRSGSYEISEKAGEILSKIAKIILDYKDYDVLVEGNTDTDPISRPNIRNNWDL 214

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           S  RA S  Q L  + GV   R++   G   +    ++      + NRR  I++  +
Sbjct: 215 STLRASSVVQALQNNYGVDPKRMTA-GGRGEYNPVASNSTIEGKALNRRTQIIITPK 270


>gi|242280306|ref|YP_002992435.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123200|gb|ACS80896.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 250

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKKISS 201
           S++    K  D+   +  +    K +      +S+E+  A+      ++++    +K+  
Sbjct: 45  SMSEIDAKKFDMTFQSVSKSISGKLQKIATSKVSREEAGAILNQVVTRRQIIKAQRKVFE 104

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            +  L     V+G++      G  I++    +  +F+        +    ++ +      
Sbjct: 105 DVKYLQTTKGVEGIMSAKFEDG-KITLK-LPSDVLFNPGQVQLSEKGRNAVKALKNFFIS 162

Query: 262 STEV-ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             +  I+I+G+TD +   + +R  DNW +S  RA +  + LMK G+  +R++  +G    
Sbjct: 163 HPDQYINIKGYTDDTQPSSKSRLKDNWEISSLRAVNVLRYLMKLGIKPNRLTA-TGLGEM 221

Query: 319 RLKIASDP--MNSANRRIDILVE 339
              + ++       NRR++ +++
Sbjct: 222 DPLVPNNSKRNRQRNRRVEFVLD 244


>gi|323529927|ref|YP_004232079.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323386929|gb|ADX59019.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 321

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 96/275 (34%), Gaps = 18/275 (6%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                + ++       N    +S      +     +    +   G      +        
Sbjct: 49  IRTTALPSASSSAPALNTAGLASGTTGAGTGAVTASPPPANATPGQVVVGGKVPDEATKA 108

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK------ILA 185
             L+  + +    N + +   +  D+    +   ++ K     L  +SK +       + 
Sbjct: 109 AVLARLRDTYGAANVVDQI--EVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQID 166

Query: 186 MKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           +K + R +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+ 
Sbjct: 167 VKGEVRNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSAT 225

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+   +L ++   +   T   ++I GHTD          N  LS  RA +    L+  
Sbjct: 226 LTPQGRAILDQMAAAMQKMTTKTVAIIGHTDN---SGNRASNIALSQARADAVKGYLVAK 282

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           GV   ++   +G    +   ++D     + NRRI+
Sbjct: 283 GVPPQQM-STTGVGPDQPIASNDTADGRARNRRIE 316


>gi|224373377|ref|YP_002607749.1| major outer membrane protein [Nautilia profundicola AmH]
 gi|223589055|gb|ACM92791.1| major outer membrane protein [Nautilia profundicola AmH]
          Length = 209

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + ++        LQK+ E+L ++    I + GHTD     +    N +LS  RA + 
Sbjct: 103 FDFNKAVVKKIYYPELQKVAEILKNNPNLKIEVAGHTDN--IGSDEY-NLKLSQKRAEAV 159

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL-VEDRQ 342
             +L+ K G+   RI    G+      + +  +   + NRR++I+ + ++Q
Sbjct: 160 KNILVNKFGIDPSRIVA-KGYGEKYPLVPNTTETNRALNRRVEIVNITNKQ 209


>gi|58580251|ref|YP_199267.1| hypothetical protein XOO0628 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622235|ref|YP_449607.1| hypothetical protein XOO_0578 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574968|ref|YP_001911897.1| hypothetical protein PXO_04090 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58424845|gb|AAW73882.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366175|dbj|BAE67333.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519420|gb|ACD57365.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 224

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDEAVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +   LA       E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLAAPLAQYLRAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|319793801|ref|YP_004155441.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315596264|gb|ADU37330.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 215

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +    +K++K   +  + +   L+G +A           T     I I     + +
Sbjct: 43  ELATKLEAEVKQRKVEAERLQTLEQALAGPLAAG-------RVTLDNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S+   PE   +L+ +   LA       E++ + G TD    R   +   DNW LS 
Sbjct: 93  FALNSAELQPEGRQLLKSLAAPLAAYLQARNEMLMVSGFTDDRQVRGGNKQFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335
            RA +  + L++ G+    +   +  A   +   +D    S NRR++
Sbjct: 153 QRALTVTRALIEEGIPSSSVFAAAFGAEQAVASNADADGRSKNRRVE 199


>gi|162448691|ref|YP_001611058.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161159273|emb|CAN90578.1| Probable outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 351

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 20/222 (9%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S+ +        R  E      + +   +S  +                 + + +L DL 
Sbjct: 115 SEATTAEAGLARRLDELIAMNEELSARLRSAGQSVGQLAGERGSLSAELAETRAKLDDLR 174

Query: 197 KK----------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +K          I   +  L        V        ++I +    +  +F+ + +   P
Sbjct: 175 RKQAAAEARAAGIRDAVDRLKGAAFAGKVRVGLRAGQLVIEV---PSDALFNGARAELTP 231

Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKS 302
           E    L  I  VL         +  HTD             +W LS  RA +  + L++ 
Sbjct: 232 EGRAALDDIAGVLRTMPAFRFQVAAHTDNDRKAMKSARFSSSWDLSAARATAVVKRLVER 291

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           G+S  R     G+        +D     + NRR++ILV   Q
Sbjct: 292 GMSP-RGLSTVGYGEFSPVGPNDTEAGRARNRRVEILVVAEQ 332


>gi|85858041|ref|YP_460243.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB]
 gi|85721132|gb|ABC76075.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB]
          Length = 223

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S+   P     + ++  V+    E  I + GHTD+         N  LS  RA + 
Sbjct: 114 FDTNSAEVRPGLYSEINRVAGVMTQYPETLIRVEGHTDSV---GSDAYNMDLSTRRANAV 170

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             +L++ GV++ RI  + G+        +D       NRR++I +  +
Sbjct: 171 KTLLVQRGVADSRIE-VVGYGETMPIATNDTEAGRQKNRRVEIKIAPQ 217


>gi|261856649|ref|YP_003263932.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261837118|gb|ACX96885.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 216

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272
               E  R G  I +        F+ +S+   P+ + VLQ++ + +      I  + G+T
Sbjct: 90  NTGVEVQRQGDGIHLQ-APEAITFNTNSATLKPQFMPVLQQLAQSVNQYPGTIVRVEGNT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D++     A  N +LSL+RA S    L + GV  +RI  + G+   R     A+    + 
Sbjct: 149 DST---GSASYNQQLSLNRAQSVASALSQYGVPYNRIQAV-GYGMTRPIASNATAAGRAQ 204

Query: 331 NRRIDILVEDRQ 342
           NRR+DIL+   Q
Sbjct: 205 NRRVDILIVPAQ 216


>gi|312889185|ref|ZP_07748742.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311298347|gb|EFQ75459.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 286

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++ +  K V  +  +  + IS+ D     ++   S     +    L KI ++
Sbjct: 127 LTNNLTRSLSADESKDVNVKVLKGVVYISLSDNM---LYKSGSYEISEKAGATLAKIAKI 183

Query: 259 LAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
           +       + I G+TD  P      R+NW LS  RA S  Q L  + GV   R++   G 
Sbjct: 184 ITDYKGYDVLIEGNTDNLPISKPNIRNNWDLSALRASSVVQSLQNNYGVEPKRLTA-GGR 242

Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341
             +     +   +  + NRR  I++  +
Sbjct: 243 GEYNPVADNSTESGKAQNRRTQIIITPK 270


>gi|163737814|ref|ZP_02145231.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis
           BS107]
 gi|161389340|gb|EDQ13692.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis
           BS107]
          Length = 655

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 19/205 (9%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS---STLSGL 206
            +       +  +L + +N           + ++L    +KRL+  A+++S     L   
Sbjct: 447 KARDAAQSVQMQNLGQDLNAALARAAAEERRRRLLEESERKRLETEAEQLSSKAQDLEQY 506

Query: 207 VADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262
            ++   +       + G+ I        +  +F   S+         + K+  +L     
Sbjct: 507 RSEFFGRLRDVLGNQEGVRIEGDRFVFASEVLFAPGSADLSSAGRAEIGKVAGILQAVAA 566

Query: 263 ------TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
                   +I + GHTD +P        DNW LS  RA S  + ++++ G+  +R+S  +
Sbjct: 567 AIPPEINWIIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-N 625

Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336
           GF  ++    +      + NRRI++
Sbjct: 626 GFGEYQPVNPAPTAVARAQNRRIEL 650


>gi|88802743|ref|ZP_01118270.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
 gi|88781601|gb|EAR12779.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P]
          Length = 289

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 92/257 (35%), Gaps = 13/257 (5%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S +  + L      TK  +        Q               N++ +    +++T + E
Sbjct: 20  SKKKYVALESQYTNTKGDLQKTTIEKEQLAAKFSAIEARVENYNTKINSLKSDNVTLERE 79

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-----LAKKISSTLSGLV 207
               L    +      +        L+K  + A+ + K L+D     +A  +  ++  L 
Sbjct: 80  NEVKLSMVGNAAVISTQTRALMNETLTKVDVNALSKAKTLKDSLNLAIAYNLKKSIDILE 139

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
            ++    +     +T ++IS+ D     +F+ +S         ++ K+  V+       +
Sbjct: 140 IES-SDDIDINIDQTVVMISVSD---KLLFNTASYRVKKGAYKLIAKLAAVIKSEPSMDV 195

Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324
            I GHTD+    N   +DNW LS+ RA S  ++L      E      SG       + + 
Sbjct: 196 MIEGHTDSRTISNAVVQDNWDLSVKRATSIVRLLESKYKVEGSRLIASGRGSTMPLVDNS 255

Query: 325 -DPMNSANRRIDILVED 340
                  NRR  I++  
Sbjct: 256 SSENRRKNRRTKIVILP 272


>gi|163858178|ref|YP_001632476.1| hypothetical protein Bpet3863 [Bordetella petrii DSM 12804]
 gi|163261906|emb|CAP44208.1| OmpA-family protein [Bordetella petrii]
          Length = 215

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 28/174 (16%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232
            LS      +K+++       ++   L+G +A                 ++++D R    
Sbjct: 43  ELSARLESEVKQRQEETQRRIELEQALAGPLAAG--------------RVTLVDGRIGIS 88

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNW 285
            + +F  +S    PE   VL+ +   L+       EV+ + G TD  P     R   DNW
Sbjct: 89  GSVLFALNSDELQPEGEEVLKSLVGPLSAYLQARDEVLMVSGFTDNQPVHGNNRRFADNW 148

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            LS  RA +  + L++ G++   +   + F   +   ++D     ++NRR++I+
Sbjct: 149 DLSAQRALTVTRALIEQGIAPASVFAAA-FGAEQPVASNDSAEGRASNRRVEIV 201


>gi|157165686|ref|YP_001466588.1| OmpA family protein [Campylobacter concisus 13826]
          Length = 219

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 19/208 (9%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ E    SL       +   +     +     E+   P    +K      +  +   
Sbjct: 2   DAKKMEAAVGSLAGALSVLEGGARPDSQVEKETDPESRRTPKPKAQKGA----QNEVTST 57

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            KKI+  L+   A      +  E +  G ++ +       +FDK S+     +  + L++
Sbjct: 58  VKKINELLTASGAPE----ITMEESEDGFIVRL---PAAMLFDKDSAEISGEDAKLFLKR 110

Query: 255 IGEVLAHSTEVIS--IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           IG ++A     +   I G+TD +     +I ++NW+LS  RA S  + L+  GV ++R+ 
Sbjct: 111 IGMIIAKMPNEVKTDIIGYTDNTNPSKDSIYKNNWQLSTARALSVLEELVSDGVPQERLI 170

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDI 336
             SG A      ++  D   + N R++I
Sbjct: 171 -TSGRASFDPIASNSTDEGRAKNNRVEI 197


>gi|172062592|ref|YP_001810243.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171995109|gb|ACB66027.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 214

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       E++ I G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPDGRDLLKTLAGPLAAYLTTRDEILMISGFADDQQVRAGNRQFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|221213356|ref|ZP_03586331.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221166808|gb|EED99279.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 316

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 86/246 (34%), Gaps = 18/246 (7%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                +     +   G      +          L   + +    N + +   +  D+   
Sbjct: 73  GTAGTLAPPPANATPGQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVGDVATP 130

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IV 212
            +   ++ K     L  +SK ++     +  +      +   ++I+S ++  +     I 
Sbjct: 131 PNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIR 190

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
            G+    +  G+L   +  R    F+  S+   P+   +L ++   LA      + I GH
Sbjct: 191 NGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGH 249

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD          N  LS  RA +    L+  G++  +++  +G    +    +D     +
Sbjct: 250 TDN---SGNRTSNIALSQARADAVKGYLITKGIAPQQMT-TTGVGPDQPIAPNDTADGRA 305

Query: 330 ANRRID 335
            NRRI+
Sbjct: 306 RNRRIE 311


>gi|326796443|ref|YP_004314263.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326547207|gb|ADZ92427.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 280

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 14/223 (6%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q    ++L   +  + ++ Q      ++        D  +  ++E    +E        S
Sbjct: 54  QAGNEKQLTETLNGVFDAVQKSVKPINIGDPIIGEPDGEEILEVEPEEAEESVSKGEEGS 113

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            +     +    L ++   ISS  S L             +     IS+ + ++  +F +
Sbjct: 114 PDNSTPSQIYDLLNEV---ISSQFSSLTQSGK-----VSISENESWISL-ELKSGLLFGE 164

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQ 297
                  E + +L  I  +L      + + G+TD  P    A    NW LS  RA +   
Sbjct: 165 GEYELTNEAVALLIVISNILNSYPSPVLVEGNTDDQPVSGAAPFSSNWSLSSLRASAVVD 224

Query: 298 VLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            L+  GV+  ++    GF+    K+   +D   + NRR+ + +
Sbjct: 225 ELVFRGVNP-KLIAPIGFSSEHPKVRNRNDDSRAQNRRVTLKI 266



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 4/147 (2%)

Query: 10  ENDQFIIIKKKVA---IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           E  + I+ +++               W + YADF+T+L AFF+ ++ I+      +K + 
Sbjct: 3   ERPKPIVRRRREPYNPRSSADKGKDRWVLSYADFITLLFAFFVALYSISLKQAGNEKQLT 62

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           +  N     +  + K I +  +P       +  L ++    + SV      +       +
Sbjct: 63  ETLNGVFDAVQKSVKPI-NIGDPIIGEPDGEEILEVEPEEAEESVSKGEEGSPDNSTPSQ 121

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEK 153
           + + +  + +SQ S   ++     SE 
Sbjct: 122 IYDLLNEVISSQFSSLTQSGKVSISEN 148


>gi|254480140|ref|ZP_05093388.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
 gi|214039702|gb|EEB80361.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
          Length = 213

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS+     + R++  QD    +   L+  +A           T     I I     + +
Sbjct: 42  ELSQSLQQEVTRREAEQDRRMVLEEALAAPLASG-------RITLRDGRIGIS---GSVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289
           F  +S     E   +L  +   L        +++ + G TD  P ++      DNW LS 
Sbjct: 92  FALNSDQLQAEGRELLSSLIPPLKLYLLEQNDLLMVSGFTDDLPIQDGNLHFNDNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRID 335
            RA +  + L++ G+    +   +  A   +   +D    S NRR++
Sbjct: 152 QRALTVTRALIEEGMPPSLVFAAAFGAEQPVVANTDSESRSRNRRVE 198


>gi|292492509|ref|YP_003527948.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291581104|gb|ADE15561.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 243

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + D  +++ + L+     + ++    +     +     D  +   FD  S+      +  
Sbjct: 82  MNDQQREMEAALAEERRRHQLEIQRLQDESLKL-----DIPSEVSFDHDSASLKQAFLPT 136

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L KI +VL    + V+ + GHTD++        N  LS+ RA +    L + GV   R+ 
Sbjct: 137 LDKIADVLKKYNKTVVHVIGHTDST---GSEEYNLDLSVRRAANVAVYLEQKGVPSPRL- 192

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            I G    + + ++D       NRR++I+++ 
Sbjct: 193 SIYGEGESQPRASNDTAAGRQLNRRVEIILKP 224


>gi|218783104|ref|YP_002434422.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764488|gb|ACL06954.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 217

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             +     E     +++++    N+ +F  +SS   P     L+ I +V+    +  I +
Sbjct: 89  EQIPNTQVEVQEDKVVVTM---DNSILFAVNSSTVQPAAQGTLRDIAQVMVKYPDTQIMV 145

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
           +GHTD++        N +LS  RA     +L+  GV   RI+ I G        ++D   
Sbjct: 146 KGHTDST---GGEEYNQQLSERRANVVKNILISYGVPAHRITAI-GLGEVMPIASNDTPD 201

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++I V   Q
Sbjct: 202 GRAMNRRVEIEVRPIQ 217


>gi|163781628|ref|ZP_02176628.1| predicted inner membrane protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882848|gb|EDP76352.1| predicted inner membrane protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 224

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D+ +          E   F+   S    +A   K+    + +++   L            
Sbjct: 40  DVAQLEKFISYFQPERKMFVRKTSILPPIAPPPKEVALKIKRRVQKVLPPWAFQ------ 93

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273
               T   + + + D      F+  +    P+    L ++  VL    E   I + GH  
Sbjct: 94  -IVITADFVKLRLFD---KVFFEDGTYQLTPKAREALVEVANVLKKLPENSFIRVEGHVS 149

Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNS 329
           +         RD W LS+ RA    + L   GV   ++S  +G+   +       P +  
Sbjct: 150 SLVEVRGRVVRDKWELSVRRATEVVRFLQAQGVEPTKLSA-AGYGDIKPLYTWRQPILME 208

Query: 330 ANRRIDILV 338
            N R++I +
Sbjct: 209 RNNRVEIYI 217



 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
            KKK      P    +W   ++D M++L+ FF++++ +++ D    +    YF P  + +
Sbjct: 3   FKKKEECPKPP----AWLTSFSDLMSLLLTFFILIYAMSSLDVAQLEKFISYFQP-ERKM 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITK 108
                 I     PP +    KI   + + +  
Sbjct: 58  FVRKTSILPPIAPPPKEVALKIKRRVQKVLPP 89


>gi|149279859|ref|ZP_01885986.1| putative flagellar motor protein MotB [Pedobacter sp. BAL39]
 gi|149229449|gb|EDM34841.1| putative flagellar motor protein MotB [Pedobacter sp. BAL39]
          Length = 289

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 12/247 (4%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           D   +   +  K    NQK Q  + + +          E   +     +     L K  +
Sbjct: 28  DLEASYTQLQEKSRELNQKYQSGQQDLSGSSSRVKSLEEQIASEKANVAALQAALDKCLN 87

Query: 163 LEKSINKEENYFLPPLSKEK---ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
                N   +  +  ++         +  K +   L   +++ L+  ++   ++ V  + 
Sbjct: 88  SSSQGNVNISKLVDEINTSNKYIQHLVNTKNKSDSLNVVLTNNLTRSLSREEMRDVDVQV 147

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278
            +  + IS+ D     ++   S          L KI +++       + I G+TD  P  
Sbjct: 148 LKGVVYISLSDNM---LYKSGSYEISDVAGQTLAKIAKIIKDYQGYDVLIEGNTDNVPIS 204

Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
               R+NW LS  RA S  Q L  +  V   R++   G   +     +D       NRR 
Sbjct: 205 QTNIRNNWDLSALRASSVVQALQNTYSVDPKRLTA-GGRGEYNPVAGNDSEAGKMKNRRT 263

Query: 335 DILVEDR 341
            I++  +
Sbjct: 264 QIIITPK 270


>gi|254474819|ref|ZP_05088205.1| flagellar motor protein [Ruegeria sp. R11]
 gi|214029062|gb|EEB69897.1| flagellar motor protein [Ruegeria sp. R11]
          Length = 655

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 104/312 (33%), Gaps = 25/312 (8%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99
            +T L    L        D   ++ +    +    +   +      EQ     + Q +  
Sbjct: 349 LLTALEQLELANAAAADRDVLQQRLLAALSDREDASAKASDLASLAEQRAALLA-QARES 407

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           LS ++ I++ +         Q    +    ++  L +  ++      +   +        
Sbjct: 408 LSQEQEISQEAQRQTALLNQQVAALREQLGSLQALLDDYKARDVAQQVQMQNLGQDLNAA 467

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
                    +          + +  A +   + QDL +  S     L             
Sbjct: 468 LARAAAEERRRRILEEEERKRLEAEAAQLSDKAQDLEQYRSEFFGRLRD--------VLG 519

Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            + G+ I        +  +F   S+   PE    + K+  +L             +I + 
Sbjct: 520 NQEGVRIEGDRFVFASEVLFAPGSADLSPEGRAEIAKVARILQTVAAAIPQGINWIIRVD 579

Query: 270 GHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326
           GHTD +P        DNW LS  RA S  + ++++ G+  +R+S  +GF  ++    ++ 
Sbjct: 580 GHTDDTPLGAHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQPVNPAET 638

Query: 327 --MNSANRRIDI 336
               + NRRI++
Sbjct: 639 PEARAQNRRIEL 650


>gi|149202409|ref|ZP_01879382.1| hypothetical protein RTM1035_13818 [Roseovarius sp. TM1035]
 gi|149144507|gb|EDM32538.1| hypothetical protein RTM1035_13818 [Roseovarius sp. TM1035]
          Length = 586

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           K+     +    + +  +     +   +          E      ++    +S+  E N 
Sbjct: 345 KLSEEAAQATEAQKQQALLNQQVAALRQQLSGLQALLDESKAREAETEVQLQSLGNELNT 404

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQ 231
            L  ++ E+      ++    L +     L    ++   +       + G+ I       
Sbjct: 405 ALARVAAEERRRRIAEEERARLLEAEKEDLEKYRSEFFGRLRDVLGQQQGVQIVGDRFVF 464

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR- 282
            +  +F    +         + K+  +L +    I         + GHTD  P    AR 
Sbjct: 465 SSEVLFAPGEADLSAAGQSEIAKVAGILRNVIGDIPEGIDWVLQVDGHTDNVPIIEGARF 524

Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            DNW LS  RA S  + L  + G    R+S  +G+   +     D   +   NRRI++ +
Sbjct: 525 ADNWALSQARALSVVRYLTGALGFPAGRLSA-NGYGEFQPVNPEDTPAARAQNRRIELKL 583

Query: 339 EDR 341
             R
Sbjct: 584 TTR 586


>gi|167750717|ref|ZP_02422844.1| hypothetical protein EUBSIR_01695 [Eubacterium siraeum DSM 15702]
 gi|167656396|gb|EDS00526.1| hypothetical protein EUBSIR_01695 [Eubacterium siraeum DSM 15702]
          Length = 339

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 14/193 (7%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215
           +        + +   N   PP ++      ++ + L     ++ S L      N + + V
Sbjct: 62  VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGRYV 121

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272
             E T T I I      NT MFD +S++   E   VL K    +    + I   S+ GHT
Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCSVSGHT 178

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329
            A    ++  ++W LS  RA S  + +     V  ++ + + G A +     +      +
Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234

Query: 330 ANRRIDILVEDRQ 342
           ANRR++I++   Q
Sbjct: 235 ANRRVEIMIVRAQ 247



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               ++    G+W   YAD +T+L+ FF++++  ++ D+   + I Q F        T+S
Sbjct: 3   KRRAESGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
               +     E+   N  D + +     N+ +    S   +           +
Sbjct: 55  GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107


>gi|317048731|ref|YP_004116379.1| DotU family type IV / VI secretion system protein [Pantoea sp.
           At-9b]
 gi|316950348|gb|ADU69823.1| type IV / VI secretion system protein, DotU family [Pantoea sp.
           At-9b]
          Length = 412

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F   ++        V+Q+I   + + +  I + G++D  P R+     N+
Sbjct: 281 SVVTLKGDGLFTSGATTVRGRYEAVIQRIAAAMNNVSGKILVVGYSDNVPIRSARFASNY 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            LSL RA S   +L +      R+    G       + +      + NRR++I + 
Sbjct: 341 ELSLARAQSVQTLLQQQLTQPARVKA-EGRGESNPLVPNTSAENRARNRRVEITLL 395


>gi|319763679|ref|YP_004127616.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|317118240|gb|ADV00729.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
          Length = 217

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    +K ++R +    +  +TL   +A  +  G     T     I I     + +
Sbjct: 43  GMQMELAERLKTEQRQRAEQARRLTTLEQALAGPLAAG---RVTLQDGRIGIS---GSVL 96

Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIA-----RDNWRL 287
           F  +S    PE   +L+ +       L    E++ + G TD  P R         DNW L
Sbjct: 97  FAFNSDELQPEGRQLLRSLSAPLAAYLRERGEILMVSGFTDDRPMRGGGGNARFADNWEL 156

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343
           S  RA +  + L+  G+   ++   +  A   +   +D    + NRR+++    R  
Sbjct: 157 SAQRALTVTRALIDEGIPSAQVFAAAFGAEQAVASNADAEGRARNRRVEMAPMPRPA 213


>gi|291558208|emb|CBL35325.1| Flagellar motor protein [Eubacterium siraeum V10Sc8a]
          Length = 339

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 14/193 (7%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215
           +        + +   N   PP ++      ++ + L     ++ S L      N + + V
Sbjct: 62  VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGQYV 121

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272
             E T T I I      NT MFD +S++   E   VL K    +    + I   S+ GHT
Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCSVSGHT 178

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329
            A    ++  ++W LS  RA S  + +     V  ++ + + G A +     +      +
Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234

Query: 330 ANRRIDILVEDRQ 342
           ANRR++I++   Q
Sbjct: 235 ANRRVEIMIVRAQ 247



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               ++    G+W   YAD +T+L+ FF++++  ++ D+   + I Q F        T+S
Sbjct: 3   KRRAESGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
               +     E+   N  D + +     N+ +    S   +           +
Sbjct: 55  GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107


>gi|300775912|ref|ZP_07085772.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
 gi|300505462|gb|EFK36600.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
          Length = 277

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L+ K+  +L  +  ++    V  +  +  ++IS+ D+    ++       LP    VL K
Sbjct: 119 LSNKLKRSLDNVSDED----VQVKVLKGVVMISLSDKM---LYKTGDYNILPAAQEVLGK 171

Query: 255 IGEVLAHST-EVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           + +V+       + I G+TD +P    N+ RDNW LS  R  S  +VL    GV   RI+
Sbjct: 172 VAKVINDYDKYSVLIEGNTDNAPLNSPNLPRDNWDLSALRGTSVAKVLQTQFGVDPARIT 231

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
              G + +  K  +      + NRR +I++  +
Sbjct: 232 A-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 263


>gi|298486507|ref|ZP_07004567.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158984|gb|EFI00045.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 268

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 26/265 (9%)

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
           G    Q+  +   Q   D    +  T              +   R E    YL +     
Sbjct: 21  GCAGHQDSGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVS 80

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
           H     +R SE  ++L  S +    ++ E       L + K+ + +++            
Sbjct: 81  HYAYLSSRYSEIARNLMLSQERLAKMDMERQRLQLALREAKLASAQQQ------------ 128

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
              G   ++ +  +    T  G+++++ D     +FD   +         + K+ + L  
Sbjct: 129 ---GRWLEDQILSLATTETDRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQI 181

Query: 262 STEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +   +  I G+TD++      ++N +LS DRA +   VLM  GV E RI  + G++    
Sbjct: 182 NPRRVVRIEGYTDST---GDRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYSQQFP 237

Query: 321 KIAS--DPMNSANRRIDILVEDRQG 343
             A+  +   + NRR++I+  D +G
Sbjct: 238 VNANASERGRAQNRRVEIVFSDEKG 262


>gi|209883793|ref|YP_002287650.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
 gi|209871989|gb|ACI91785.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
          Length = 464

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   ++  P+++ +L ++ EV L  ST  I I GHTD++     A  N  LS  RA S 
Sbjct: 363 FETGKAVIDPDSVGLLDRLVEVVLRCSTSQIEITGHTDSN---GDAESNLALSNRRAQSV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
              L+K+GV  +RI+ I GF   R    +D     + NRRI+ LV+
Sbjct: 420 ADYLIKAGVPSERITAI-GFGSGRPIAPNDTEEGKAQNRRIEFLVK 464


>gi|107102449|ref|ZP_01366367.1| hypothetical protein PaerPA_01003511 [Pseudomonas aeruginosa PACS2]
          Length = 269

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +N+E    L    +   LA++  K L  Q+  +++S  ++ L           E T  G+
Sbjct: 99  LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           ++++ D     +FD + +   P       K+ + L  +    I I G+TD+       + 
Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           N  LS +RA +   VL   GV   R+ ++ G+         AS+   + NRR++I+  + 
Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261

Query: 342 QG 343
           +G
Sbjct: 262 KG 263


>gi|49082800|gb|AAT50800.1| PA2900 [synthetic construct]
          Length = 270

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +N+E    L    +   LA++  K L  Q+  +++S  ++ L           E T  G+
Sbjct: 99  LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           ++++ D     +FD + +   P       K+ + L  +    I I G+TD+       + 
Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           N  LS +RA +   VL   GV   R+ ++ G+         AS+   + NRR++I+  + 
Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261

Query: 342 QG 343
           +G
Sbjct: 262 KG 263


>gi|332702326|ref|ZP_08422414.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552475|gb|EGJ49519.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 243

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 8/205 (3%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S   ++ LTR +    D+   T         +   +  L +    AM++++R++DL  
Sbjct: 37  SMSTMDRSYLTRVTIFTSDVSLMTVRAAGRIPTKMQVVIELLENPREAMRKQQRIKDLLF 96

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                 S +    + + +       G+ + + D     +F    +      + +L++I  
Sbjct: 97  PDDIMPSQVDRALLEENLQILARDEGVALVLSD---KLLFAMGEAKLKDSALPILERIAY 153

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           VLA  T  +++ GH+D       +  N+ +S +RA    Q L + G+   R+  +S F  
Sbjct: 154 VLAFMTAPVNVAGHSDM--VGGRSDGNYAISANRAMEVLQFLQEYGLDNRRL-SVSAFGP 210

Query: 318 HRLKIASDPMNS--ANRRIDILVED 340
            +  +  +       NRR++ILV+ 
Sbjct: 211 DQPLLEGNGPAVWNKNRRVEILVKT 235


>gi|325524318|gb|EGD02423.1| OOP family OmpA-OmpF porin [Burkholderia sp. TJI49]
          Length = 254

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 86/246 (34%), Gaps = 18/246 (7%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
                IT    +   G      +          L   + +    N + +   +  D+   
Sbjct: 11  GTAGTITPPPANATPGQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVGDVATP 68

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IV 212
            +   ++ K     L  +SK ++     +  +      +   ++++S ++  +     I 
Sbjct: 69  PNWSANVQKLLGPQLKQISKGQLKINGTQIEMKGEVHNEAQRQQLASDMANTLNPTYTIR 128

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
            G+    +  G+L   +  R    F+  S+   P+   +L ++   LA      + I GH
Sbjct: 129 NGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGKQILDQMAAALAKMPNRTVDIIGH 187

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD          N  LS  RA +    L+   ++  +++  +G    +    +D     +
Sbjct: 188 TDN---SGNRTSNIALSQARADAVKGYLITKSIAPQQMT-TTGVGPDQPIAPNDTAEGRA 243

Query: 330 ANRRID 335
            NRRI+
Sbjct: 244 RNRRIE 249


>gi|258592566|emb|CBE68875.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 184

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           D+   +   LS  V + I  G V  E    G+++   D     +F   S+    +   +L
Sbjct: 63  DVVGLLVQQLSSHVEEEIKTGSVEIERNDKGLILRFRDT---VLFGLGSATLSDDAKKIL 119

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRIS 310
            K+   L +    I + GHTD  P R+     NW LS+ RA +    ++        R++
Sbjct: 120 DKVARPLFNMPYAIEVEGHTDLLPIRSSNFPSNWELSVTRATAVIRHLVEVHRFPPARLA 179

Query: 311 K 311
            
Sbjct: 180 A 180



 Score = 39.9 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNPPERS 93
           + YAD +T+L+AFF+V++  +  D      +       FG  L                 
Sbjct: 1   MTYADMITLLLAFFIVLYASSRVDGRKYSDLVSSIRMAFGVPLPPRPIVQAGNGGETLLP 60

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
             + + L + +  +    ++K GS   ++  +
Sbjct: 61  FPDVVGLLVQQLSSHVEEEIKTGSVEIERNDK 92


>gi|269121368|ref|YP_003309545.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268615246|gb|ACZ09614.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 215

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
               + L  D    GV    T  G  I ++   N   F  +SS         L  I  VL
Sbjct: 77  DKQEAKLREDLKGTGVEVTRTAEG-EIKLVAPENVT-FATNSSTISSRFTNTLDSIASVL 134

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  I++ GHTD++   N A +N  LS++RA S    L + G++  RI+ + G+   
Sbjct: 135 KEYPDSNITVSGHTDST--GNDAINN-PLSVNRANSVANYLKQEGIASSRITAV-GYGSK 190

Query: 319 RLKIASDP--MNSANRRIDILVEDR 341
           +   ++      + NRR++I +  +
Sbjct: 191 QPVASNSTSDGRAQNRRVEIKITAK 215


>gi|15598096|ref|NP_251590.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
 gi|116050903|ref|YP_790274.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890901|ref|YP_002439767.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254235886|ref|ZP_04929209.1| hypothetical protein PACG_01830 [Pseudomonas aeruginosa C3719]
 gi|254241564|ref|ZP_04934886.1| hypothetical protein PA2G_02265 [Pseudomonas aeruginosa 2192]
 gi|296388613|ref|ZP_06878088.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           PAb1]
 gi|313108050|ref|ZP_07794215.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|9948992|gb|AAG06288.1|AE004716_6 probable outer membrane protein precursor [Pseudomonas aeruginosa
           PAO1]
 gi|115586124|gb|ABJ12139.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167817|gb|EAZ53328.1| hypothetical protein PACG_01830 [Pseudomonas aeruginosa C3719]
 gi|126194942|gb|EAZ59005.1| hypothetical protein PA2G_02265 [Pseudomonas aeruginosa 2192]
 gi|218771126|emb|CAW26891.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|310880717|gb|EFQ39311.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 269

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +N+E    L    +   LA++  K L  Q+  +++S  ++ L           E T  G+
Sbjct: 99  LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           ++++ D     +FD + +   P       K+ + L  +    I I G+TD+       + 
Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           N  LS +RA +   VL   GV   R+ ++ G+         AS+   + NRR++I+  + 
Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261

Query: 342 QG 343
           +G
Sbjct: 262 KG 263


>gi|283851028|ref|ZP_06368313.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283573674|gb|EFC21649.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 263

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 10/186 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV-- 212
           +D    +  +    ++   F+ P + +     K  +    L  +I+  +  L++ ++   
Sbjct: 65  QDKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEIALLIKELISSDLSVK 123

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
                    +G+L+ +    N+ MF   S+   P    VL  +  +L      +++RGH 
Sbjct: 124 NNSGVSNDSSGVLMQV---NNSVMFRTGSAELTPAAAKVLDGVARILQDFKINLTVRGHA 180

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNS 329
           D           W LS  RA +A + L  K+G+   R+  + G A  +  +   S    +
Sbjct: 181 DDEEKGGPYPSKWELSAARAAAATRYLAEKTGIPTTRLRAV-GLADSQPLVPPTSAENKA 239

Query: 330 ANRRID 335
            NRRI+
Sbjct: 240 RNRRIE 245



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 10  ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
            + + ++I ++       ++ GSWK+ YADF+T +MAFFL++W++ +     K+ +   F
Sbjct: 5   SDGKTVVIYRESDEGHGGHHGGSWKVAYADFVTAMMAFFLLLWLVVSLKPQRKQELSLVF 64

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
                  + + + + + +  P   S + I  S +  +++ 
Sbjct: 65  Q---DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE 101


>gi|71907729|ref|YP_285316.1| hypothetical protein Daro_2103 [Dechloromonas aromatica RCB]
 gi|71847350|gb|AAZ46846.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 214

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           S E  +  ++++  + +A  +   L+G +A           T   I IS        +F 
Sbjct: 46  SLESEIQKRQQEEQRRMA--LEKALAGPLASG-----RVTLTNGKIGIS-----GNVLFA 93

Query: 239 KSSSIPLPETIVVLQK----IGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDR 291
            +S    PE   +L+     I   L  S +++ + G TD  P R   R   DNW LS  R
Sbjct: 94  LNSDQLQPEGKQLLKSLSQPIAAYLGASEQMLMVSGFTDDMPVRGSNRQFADNWELSAQR 153

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           A +  + L+  GV    I   + F   +    +      + NRR++
Sbjct: 154 ALTVTRTLIDDGVPASSIFAAA-FGAQQPVADNAAAEGRARNRRVE 198


>gi|33595602|ref|NP_883245.1| hypothetical protein BPP0920 [Bordetella parapertussis 12822]
 gi|33600116|ref|NP_887676.1| hypothetical protein BB1130 [Bordetella bronchiseptica RB50]
 gi|33565680|emb|CAE40328.1| probable outer membrane protein [Bordetella parapertussis]
 gi|33567714|emb|CAE31628.1| probable outer membrane protein [Bordetella bronchiseptica RB50]
          Length = 215

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 19/167 (11%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSI 243
           +  ++S+ L   V     +    E     +        ++++D R       +F  +S  
Sbjct: 40  MQIELSTRLEAEVEQRQAETQRREALEQALAAPLAAGRVTLVDGRIGISGNVLFALNSDQ 99

Query: 244 PLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAY 296
             PE   +L  +   L+       E++ + G TD        R   DNW LS  RA +  
Sbjct: 100 LQPEGREILASLVAPLSAYLRAHDEILMVSGFTDDQQVHQGNRRYADNWELSAQRALTVT 159

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVEDRQ 342
           + L+ +G+    +   +  A   +   A +   + NRR++I    RQ
Sbjct: 160 RALIDAGIPAASVFAAAFGAEQPVASNADETGRAQNRRVEIAPIPRQ 206


>gi|317151983|ref|YP_004120031.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942234|gb|ADU61285.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 241

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 10/205 (4%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            S      LTR + +  DL                 +  L ++    + +K+RL+DL   
Sbjct: 36  MSSMDNAILTRVTLQTADLGLLDKRGSGRVDVRERLVIELMEKPWEVLDKKQRLKDLLFP 95

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                  L    + K +       G+ +   D     +F+  +S        +L+ +  V
Sbjct: 96  DDVLPDDLSKAELDKNLEILAKPDGVALVFTD---KLLFEPGASRLSLRGEQLLEALTPV 152

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L  +   +++ GHTDA    +   D + LS DRA +    L+ +GV + R   +S +   
Sbjct: 153 LLFTAAPVNVAGHTDA---SDTGADPYALSGDRALAVLSFLVDAGVPDRRF-SLSAYGSD 208

Query: 319 RLKIASDP---MNSANRRIDILVED 340
              +        +S NRR++IL++ 
Sbjct: 209 VPALDERDRPVASSMNRRVEILLKT 233


>gi|159045480|ref|YP_001534274.1| hypothetical protein Dshi_2940 [Dinoroseobacter shibae DFL 12]
 gi|157913240|gb|ABV94673.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12]
          Length = 648

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 16/241 (6%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
              ++     +         +     +       +      E      ++    +++  E
Sbjct: 404 AQEQLRRVEAQSAQDARRVAVLNEQVAALRTQLNSLQGLLDEASARDAEAQVQIEALGTE 463

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--I 228
            N  L  ++ E+      ++  +   +  +  L+   ++   +       + G+ I    
Sbjct: 464 LNTALARVAAEQRARADLEEAERRRLEAEAQDLARYRSEFFGELRDLLGGQEGVRIEGDR 523

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280
               ++ +FD       P+    + K+  +L    + I         + GHTD  P    
Sbjct: 524 FVFSSSVLFDTGEVALSPQGQAEVAKVAGILRSVADRIPEGIDWVLRVDGHTDNVPVTGG 583

Query: 281 AR--DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            +  DNW LS  RA S  + L    G+  DR+   +GF  ++     D     + NRRI+
Sbjct: 584 GKYADNWELSQGRALSVARFLIEDQGIPPDRL-APTGFGEYQPVSLEDTPEGRALNRRIE 642

Query: 336 I 336
           +
Sbjct: 643 L 643


>gi|254464778|ref|ZP_05078189.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206685686|gb|EDZ46168.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 613

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 17/206 (8%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                +++ +      DL  ++ +  +        E+    + +   + LA K +  L  
Sbjct: 405 QTRDAAQQVQLQNLGQDLNAALARAASEERRRRLLEEQERKRLEAEAEALASK-AQDLER 463

Query: 206 LVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             ++   +      T+ G+ I        +  +F   S+   P   V + K+  +L    
Sbjct: 464 YRSEFFGRLRDLLGTQEGVRIQGDRFVFASEVLFAPGSATLSPAGKVEIAKVVSILQSVV 523

Query: 264 --------EVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
                    +I + GHTD +P        DNW LS  RA S  + ++++ GV   R++  
Sbjct: 524 AAIPPEISWIIRVDGHTDDTPLVAHPKFNDNWELSQGRALSVVRYMVEALGVPPSRLAA- 582

Query: 313 SGFAHHRLKIA--SDPMNSANRRIDI 336
           +GF  ++   +  +    + NRRI++
Sbjct: 583 NGFGEYQPVNSAGTPEARAQNRRIEL 608


>gi|78063303|ref|YP_373211.1| hypothetical protein Bcep18194_B2456 [Burkholderia sp. 383]
 gi|77971188|gb|ABB12567.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 214

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   L        E++ I G  D        R   DNW LS 
Sbjct: 92  FALNSDQLQPAGRDLLKTLAAPLGAYLKTRDEILMISGFADDQQVHAGNRQFTDNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|322436615|ref|YP_004218827.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164342|gb|ADW70047.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 531

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 107/286 (37%), Gaps = 19/286 (6%)

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KK 122
           I Q       +  T +    D +N  +  S    D+ ++    + +V     +     +K
Sbjct: 237 IAQQNGADKYSPDTMASAKQDLKNASDIDSGKHRDVKMEITYARQAVQRAEDARVDTLRK 296

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
           +    + N     N  Q +  ++    ++ +  +   + D +KS    +   L   + + 
Sbjct: 297 KAAERQRNAEIAKNDAQQQAAQSQAQAEAARLAEQKSALDAQKSQLAAQQAQLAQANADA 356

Query: 183 ILAMKRKKRLQDLAK--------KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           + A  R K L+   +        + +  +   +   + + +    T  G+++++ D    
Sbjct: 357 LAAQARNKELEANQRADAANKRAESAEQMRERLRAQLNEVLQTTETSRGVIVNLSD---- 412

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD         T V L ++  +L       + + G+TD          N RLS +RA 
Sbjct: 413 ALFDTGKYTLKTNTQVSLARVAGILQSYPGLKVQVEGYTD---IVGSDALNQRLSENRAN 469

Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           +    ++K GV  D IS    G A       +    + NRR++++V
Sbjct: 470 TTRDFMVKQGVPTDSISAAGYGKADPVADNGTAAGRAQNRRVELVV 515


>gi|171316577|ref|ZP_02905793.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171098305|gb|EDT43111.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 316

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 85/251 (33%), Gaps = 18/251 (7%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
             +       I     +   G      +          L   + +    N + +   +  
Sbjct: 68  GTVVHGTAGTIAPPPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVG 125

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVAD 209
           D+    +   ++ K     L  +SK ++     +  +      +   ++++S ++  +  
Sbjct: 126 DVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVHNEAQRQQLASDMANTLNP 185

Query: 210 N--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266
              I  G+    +  G+L   +  R    F+  S+   P+   +L ++   L+      +
Sbjct: 186 TYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGRQILDQMAAALSKLQNRTV 244

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            I GHTD          N  LS  RA +    L+   +   +++  +G    +    +D 
Sbjct: 245 DIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TTGVGPDQPIAPNDT 300

Query: 327 --MNSANRRID 335
               + NRRI+
Sbjct: 301 AEGRARNRRIE 311


>gi|227540121|ref|ZP_03970170.1| OmpA/MotB:Rickettsia surface antigen [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300771844|ref|ZP_07081715.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|227239982|gb|EEI89997.1| OmpA/MotB:Rickettsia surface antigen [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300761230|gb|EFK58055.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 173

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFE-----TTRTGILISIIDQRNTPMFDKSSSIPL 245
           + Q L     + LS    D+ +K V  E      T  GI  S+       +F  +SS   
Sbjct: 21  KQQALTVNPGAVLSKDGTDDGLKNVKEEFKDASRTEEGIKFSLSSD---FLFPTNSSYLT 77

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            ++   L K+ ++L  +++  I + GHTDA+       + W LS  RA S  + L+ SG+
Sbjct: 78  DKSKGELSKLAKLLKDNSKTKIRVDGHTDAT--GTPEYNLW-LSDKRAVSVKKFLVDSGI 134

Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           SE RI +K  G A       +      NRR+++++ +++
Sbjct: 135 SESRITTKGIGQAKPVADNKTPEGRQMNRRVEVVLLNQK 173


>gi|124008054|ref|ZP_01692753.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
 gi|123986468|gb|EAY26274.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
          Length = 563

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +S+    +T+  LQ I ++L       + I  HTD         DN  LS  RA +
Sbjct: 461 LFDYNSAKLDDKTLGYLQTIAQLLKKEPQLKLEISAHTDN---HGTHDDNMNLSKQRAQA 517

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             + L+K+GV   R+S   G+   R  + +        NRR+++ V 
Sbjct: 518 VKEFLVKAGVDVKRLSA-KGYGETRPLVPNTTVANRERNRRVELKVL 563


>gi|45656490|ref|YP_000576.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45599725|gb|AAS69213.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 475

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           V    T  GI IS+    N+ +FD +SS    E  + L++I  VL    +  I I GHTD
Sbjct: 353 VEIRRTEEGIAISL----NSVLFDHNSSELKQEAKLELKRIASVLKKYADREIRISGHTD 408

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330
                     N +LS +RA S  + L    G+ E R+    G+   +    +        
Sbjct: 409 N---SGGEEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQK 464

Query: 331 NRRIDILV 338
           NRR+DI +
Sbjct: 465 NRRVDITI 472


>gi|53716748|ref|YP_105773.1| hypothetical protein BMAA1115 [Burkholderia mallei ATCC 23344]
 gi|53722286|ref|YP_111271.1| hypothetical protein BPSS1264 [Burkholderia pseudomallei K96243]
 gi|67640638|ref|ZP_00439437.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|76817712|ref|YP_335426.1| hypothetical protein BURPS1710b_A0267 [Burkholderia pseudomallei
           1710b]
 gi|121597371|ref|YP_989733.1| hypothetical protein BMASAVP1_0116 [Burkholderia mallei SAVP1]
 gi|124383227|ref|YP_001024134.1| hypothetical protein BMA10229_0310 [Burkholderia mallei NCTC 10229]
 gi|126444000|ref|YP_001062783.1| hypothetical protein BURPS668_A1788 [Burkholderia pseudomallei 668]
 gi|126447861|ref|YP_001078471.1| hypothetical protein BMA10247_A1285 [Burkholderia mallei NCTC
           10247]
 gi|126458362|ref|YP_001075736.1| hypothetical protein BURPS1106A_A1702 [Burkholderia pseudomallei
           1106a]
 gi|134283770|ref|ZP_01770468.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|167004053|ref|ZP_02269827.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|167723789|ref|ZP_02407025.1| hypothetical protein BpseD_32535 [Burkholderia pseudomallei DM98]
 gi|167742753|ref|ZP_02415527.1| hypothetical protein Bpse14_32062 [Burkholderia pseudomallei 14]
 gi|167819935|ref|ZP_02451615.1| hypothetical protein Bpse9_32712 [Burkholderia pseudomallei 91]
 gi|167828320|ref|ZP_02459791.1| hypothetical protein Bpseu9_31854 [Burkholderia pseudomallei 9]
 gi|167849768|ref|ZP_02475276.1| hypothetical protein BpseB_31255 [Burkholderia pseudomallei B7210]
 gi|167898369|ref|ZP_02485770.1| hypothetical protein Bpse7_31831 [Burkholderia pseudomallei 7894]
 gi|167906730|ref|ZP_02493935.1| hypothetical protein BpseN_31160 [Burkholderia pseudomallei NCTC
           13177]
 gi|167915084|ref|ZP_02502175.1| hypothetical protein Bpse112_31676 [Burkholderia pseudomallei 112]
 gi|167922922|ref|ZP_02510013.1| hypothetical protein BpseBC_30487 [Burkholderia pseudomallei
           BCC215]
 gi|217418998|ref|ZP_03450505.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|226198078|ref|ZP_03793650.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237510063|ref|ZP_04522778.1| OmpA/MotB domain protein [Burkholderia pseudomallei MSHR346]
 gi|242311463|ref|ZP_04810480.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254174540|ref|ZP_04881202.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|254183624|ref|ZP_04890216.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|254191105|ref|ZP_04897610.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254193505|ref|ZP_04899939.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|254200586|ref|ZP_04906951.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254262357|ref|ZP_04953222.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254301765|ref|ZP_04969208.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|254356764|ref|ZP_04973039.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|52212700|emb|CAH38731.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
 gi|52422718|gb|AAU46288.1| ompA family protein [Burkholderia mallei ATCC 23344]
 gi|76582185|gb|ABA51659.1| ompA family protein [Burkholderia pseudomallei 1710b]
 gi|121225169|gb|ABM48700.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124291247|gb|ABN00517.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126223491|gb|ABN86996.1| OmpA family protein [Burkholderia pseudomallei 668]
 gi|126232130|gb|ABN95543.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|126240715|gb|ABO03827.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|134244952|gb|EBA45048.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|147748198|gb|EDK55273.1| OmpA family protein [Burkholderia mallei FMH]
 gi|148025791|gb|EDK83914.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|157811639|gb|EDO88809.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|157938778|gb|EDO94448.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160695586|gb|EDP85556.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|169650258|gb|EDS82951.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|184214157|gb|EDU11200.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|217398302|gb|EEC38317.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|225929954|gb|EEH25969.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|235002268|gb|EEP51692.1| OmpA/MotB domain protein [Burkholderia pseudomallei MSHR346]
 gi|238521399|gb|EEP84851.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|242134702|gb|EES21105.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|243060517|gb|EES42703.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254213359|gb|EET02744.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 215

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 16/169 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    +  + R + L  +   TL   +A  +  G +         I I     + +
Sbjct: 39  GVQLELSSKLDAEVRQRQLESQRRKTLEQALAAPLAAGRVTLVNG---RIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA        ++ + G  D    R   R   DNW LS 
Sbjct: 93  FALNSDELQPAGRDLLKSLAGPLAAYLNANHEILMVSGFADDLQVRAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  +  +  GV    +   + F   +     ++D   + NRR++I
Sbjct: 153 KRALTVTRAFIDEGVPASSVFAAA-FGSEQPVSPNSNDAGRAKNRRVEI 200


>gi|83854840|ref|ZP_00948370.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1]
 gi|83842683|gb|EAP81850.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1]
          Length = 582

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 17/203 (8%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
            +D  K   L+   +          ++E+  A         L  + +  L    ++   +
Sbjct: 382 ARDAAKEVQLQSLGSDLNTALARVAAEERRRAELEAAERARLEAE-TKNLEQYRSEFFGR 440

Query: 214 GVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HST 263
                  + G+ I        +  +F   ++    +    + K+  +L            
Sbjct: 441 LRALLGNQEGVRIEGDRFVFSSEVLFPPGAATLSADGRGEIAKVAGILRNIAADIPPEID 500

Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
            VI + GHTD  P   +    DNW LS  RA S  + ++   G++ +R++  +GF  ++ 
Sbjct: 501 WVIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQP 559

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
             + +   +   NRRI++ + +R
Sbjct: 560 VASGNTEAARAQNRRIELKLTER 582


>gi|115350445|ref|YP_772284.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115280433|gb|ABI85950.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 316

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 22/255 (8%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
               +       I     +   G      +          L   + +    N + +   +
Sbjct: 66  GSGTVVHGTAGTIAPPPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAANVVDQI--E 123

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKIL----------AMKRKKRLQDLAKKISSTL 203
             D+    +   ++ K     L  +SK ++            +  + + Q LA  +++TL
Sbjct: 124 VGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEVKGEVHNEAQRQQLASDMANTL 183

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +      I  G+    +  G+L   +  R    F+  S+   P+   +L ++   L+   
Sbjct: 184 NPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGRQILDQMAAALSKLQ 240

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTD          N  LS  RA +    L+   +   +++  +G    +   
Sbjct: 241 NRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TTGVGPDQPIA 296

Query: 323 ASDP--MNSANRRID 335
            +D     + NRRI+
Sbjct: 297 PNDTADGRARNRRIE 311


>gi|319790576|ref|YP_004152209.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
 gi|317115078|gb|ADU97568.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1]
          Length = 251

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 72/138 (52%), Gaps = 12/138 (8%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + +++D   K V+ E  R  +++     +++ +F  +S+   PE +  LQ+I + L  + 
Sbjct: 111 APVISDKRPKAVVKEPGRVKVVL-----KDSVLFGLNSAELKPEAVKELQRIAQTLKENP 165

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + + G+TD +      + N +LS +RA +  +VL+++GV  +RI  + G        
Sbjct: 166 KTTVVVVGYTDNT---GSLKYNLKLSKERAEAVKKVLVEAGVRPERIL-VFGCGPKNPIA 221

Query: 323 ASDP--MNSANRRIDILV 338
            +D     + NRR++IL+
Sbjct: 222 PNDTPQHRALNRRVEILI 239


>gi|116688507|ref|YP_834130.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116646596|gb|ABK07237.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 316

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T +     + NP    +   +       I     +   G      +          L   
Sbjct: 50  TVATTALPQANPNAGGASGTVVHGTAGTIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192
           + +    N + +   +  D+    +   ++ K     L  +SK ++     +  +     
Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167

Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P+  
Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++L ++   LA      + I GHTD          N  LS  RA +    L+   +   +
Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQ 283

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRID 335
           ++  +G    +    +D     + NRRI+
Sbjct: 284 MT-TTGVGPDQPIAPNDMADGRARNRRIE 311


>gi|162454713|ref|YP_001617080.1| hypothetical protein sce6431 [Sorangium cellulosum 'So ce 56']
 gi|161165295|emb|CAN96600.1| Putative outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 293

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
           + Q+Q  E  +       ++   K      +E  K L  +      +N+        +S+
Sbjct: 46  QSQHQTTEGRLAETQKELEAAQAK-----VAELTKQLEAAGVDIGKLNENLQATSTQVSQ 100

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNT 234
                 +R+K L +   +     +       +K  L E T+ G+ ++I      I     
Sbjct: 101 LSSTLEEREKALAEFKARARQLEAIKARFETLKKKLDELTKLGLAVNIRNNRMVISLPGD 160

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIA-RDNWRLSL 289
            +FD        E   +L K+  V+ +          + GHTD  P      RDNW LSL
Sbjct: 161 VLFDSGRETLKKEGKEILLKVATVVKNDKSLLQRDYQVAGHTDNKPLVGGQFRDNWGLSL 220

Query: 290 DRAYSAYQVLMK-------SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            RA      L+         G         +GFA       +D       NRR D++V  
Sbjct: 221 MRAREVLVFLVSPADVKGGGGALPVANWSAAGFADTDPVATNDTDEGRQKNRRCDLIVVP 280


>gi|163786812|ref|ZP_02181260.1| OmpA domain protein [Flavobacteriales bacterium ALC-1]
 gi|159878672|gb|EDP72728.1| OmpA domain protein [Flavobacteriales bacterium ALC-1]
          Length = 465

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 218 ETTRTGILISIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
           E   T  ++  ++      +FD   +    ET  VLQ +  +     +   SI GHTD+ 
Sbjct: 343 EVKPTAEVVETLNTYARSILFDTGKASFKKETDQVLQAMVAIFKEYPKADFSIEGHTDSV 402

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  LS  RA +    L+ +G+S DR++  +G+        +        NRR
Sbjct: 403 ---GSKSTNQALSDRRANAVRDYLIANGISADRLTA-AGYGEDNPIANNKTRAGRKENRR 458

Query: 334 IDILVED 340
           +++ +++
Sbjct: 459 VEVKLKN 465


>gi|24216314|ref|NP_713795.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24197586|gb|AAN50813.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
          Length = 475

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           V    T  GI IS+    N+ +FD +SS    E  + L++I  VL    +  I I GHTD
Sbjct: 353 VEIRRTEEGIAISL----NSVLFDHNSSELKQEAKLELKRIASVLKKYADREIRISGHTD 408

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330
                     N +LS +RA S  + L    G+ E R+    G+   +    +        
Sbjct: 409 N---SGGEEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQK 464

Query: 331 NRRIDILV 338
           NRR+DI +
Sbjct: 465 NRRVDITI 472


>gi|307727249|ref|YP_003910462.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587774|gb|ADN61171.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 219

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + L  +   TL   +A  +  G +         I I       +
Sbjct: 42  GVQLELSNKLEQEVKQRQLETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+     + E++ + G TD    R   R   DNW LS 
Sbjct: 96  FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEMLMVSGFTDDQRLREGNRRFADNWELSA 155

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+ +GV    +   + G        A +   + NRR++I
Sbjct: 156 QRALTVTRALIDAGVPVSSVFAAAFGSGQPVSSNADEQGRARNRRVEI 203


>gi|13472158|ref|NP_103725.1| hypothetical protein mlr2359 [Mesorhizobium loti MAFF303099]
 gi|14022903|dbj|BAB49511.1| mlr2359 [Mesorhizobium loti MAFF303099]
          Length = 504

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +I    + L       G+   T    I++ I    N  +F    +    +   +   I +
Sbjct: 349 QIDRIRAALAQQIAAGGLGVGTKGDFIVVEIS---NQLLFASGQAELKAQFQPIAADIAK 405

Query: 258 VLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            L      I I GHTD       +  + N+ LS+ RA +   ++ +      R+  + G 
Sbjct: 406 ALDAEAGPIKIVGHTDNVKPKKSSAFKSNFDLSVARAKAVQAMIARQLKDPSRL-SVDGK 464

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   +      + NRR+D+++  ++
Sbjct: 465 GEDEPIADNATADGRAKNRRVDVMIPKQE 493


>gi|255263223|ref|ZP_05342565.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62]
 gi|255105558|gb|EET48232.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62]
          Length = 725

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 17/252 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
             ++  T  +      +  Q    +             Q      SL    +   +   +
Sbjct: 470 EAEQQETLLAAARARLAEEQAISDEGQLRIEALNQQVAQLRTQLASLQTLLDVASEQDAA 529

Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           +D+E +++  + N  L  +++E+    + ++  +   +  +  L    ++   +      
Sbjct: 530 SDVEIQALGAQLNAALARVAQEQRKRAELEEAERKRLEAEAQDLERYRSEFFGQLRDLLE 589

Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
            + G+ I        +  +F   S+         + K+  +L             VI + 
Sbjct: 590 GQDGVRIEGDRFVFASEVLFRPGSADLSDAGRDEIAKVAGILRGVASEIPPSINWVIRVD 649

Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--S 324
           GHTD +P   + +  +NW LS  RA S    ++   G+  +R++  +GF  ++      S
Sbjct: 650 GHTDNTPLSGLGQFANNWELSQARALSVVLYMVNFLGIPPNRLAA-NGFGQYQPVTNGDS 708

Query: 325 DPMNSANRRIDI 336
           D   + NRRI++
Sbjct: 709 DQARAQNRRIEL 720


>gi|254452952|ref|ZP_05066389.1| OmpA/MotB [Octadecabacter antarcticus 238]
 gi|198267358|gb|EDY91628.1| OmpA/MotB [Octadecabacter antarcticus 238]
          Length = 668

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 23/269 (8%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
            ++S    D      +   + +            QR    +     + + E  +     +
Sbjct: 405 TQTSVAAADSDRQAALLALANNALTQEQALSADNQRQVALLNEQVAALRGEMGRLQALLN 464

Query: 151 SEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            E   D+  +  +E   +++N      L    + ++L     +R+   A ++    S  +
Sbjct: 465 LENEADVTANVQIETLTQNLNTAMARALLAERRARVLEDAELERMAAEAVELERYRSDFL 524

Query: 208 ADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--- 262
              +++ VL +    G+ I        +  +F++ ++    +    + K+  +L      
Sbjct: 525 --GLLRNVLEDV--DGVRIEGDRFVFSSEVLFEQGAARLSADGQREIAKVAAILRDVAGD 580

Query: 263 -----TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
                  VI + GHTD  P        +NW LS  RA S    ++    +  DR++  +G
Sbjct: 581 IPESIDWVIRVDGHTDNVPLSGAGEFANNWELSQARALSVVLYMVNFLAIPPDRLAA-NG 639

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDR 341
           F  ++     D   +   NRRI++ + +R
Sbjct: 640 FGQYQPINLEDTTEARAQNRRIELKLTER 668


>gi|193212466|ref|YP_001998419.1| OmpA/MotB domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193085943|gb|ACF11219.1| OmpA/MotB domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 232

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
           K++ +    +   S +  +  C+++       G        +   I      +       
Sbjct: 8   KKFSKPAALLLLASTATVTTGCQSTTNAGRGAGIGATSGAVIGGIIGSRSGSWAQGALIG 67

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             +       + D   K +  +   V          E    GI + + D     +F  +S
Sbjct: 68  AAIGGAGGAIIGDYMDKQAEEIRQEVG-----NADVERVGEGIRV-VFDT--GLLFSTNS 119

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S   P +   ++ +  VL    +  + + GHTD+         N  LS  RA S   +L 
Sbjct: 120 STLNPNSRYNIENLARVLNRYPDTNVVVEGHTDSI---GSEATNQVLSERRAESVVSLLR 176

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV-----EDRQG 343
             GV  +R++ + G+   R    ++       NRR+++L+       RQ 
Sbjct: 177 AYGVYGNRLTAV-GYGETRPVATNETEMGRRQNRRVEVLIYANNELKRQA 225


>gi|224532213|ref|ZP_03672845.1| flagellar motor apparatus [Borrelia valaisiana VS116]
 gi|224511678|gb|EEF82084.1| flagellar motor apparatus [Borrelia valaisiana VS116]
          Length = 260

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIIVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      ++NW LS  R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKNNWELSTARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   +   +++GF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVKSIENKFEVAGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          IKK +  D        + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 5  IKKPLKCD---EGSPDYMVTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|206602390|gb|EDZ38871.1| Putative OmpA family protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 265

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
            + Q      L +     +  +Q     ++L   SE  K+     D++  +         
Sbjct: 34  DSAQMSLQNALNDENLKQAAPEQLNKASDALKHASELLKNGAPKKDVDHYVYLATQRIKI 93

Query: 177 PLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQR 232
              KEK   ++++ K+      +I    +    + + + +L    + T  G+++++    
Sbjct: 94  AEQKEKAAELQKEIKKASAHRDQIMLEANQAKIERLKRELLKMKAKETNRGLVLTL---- 149

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD + +   P  +  ++K+ E +    +  + I G+TD++     A  N +LSL R
Sbjct: 150 GNVLFDLNKADLKPGGMRTIKKLAEFMQSDPKRNVMIEGYTDST---GTAAYNEKLSLKR 206

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           A S    L+  G++  RI    G+       ++   +    NRR++I++ D +G
Sbjct: 207 AESVRDALVNDGINPQRIV-TKGYGPKYPIASNKTADGRQQNRRVEIVISDEKG 259


>gi|163745692|ref|ZP_02153052.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45]
 gi|161382510|gb|EDQ06919.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45]
          Length = 645

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 89/242 (36%), Gaps = 16/242 (6%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
             +  +          + +  +     ++      N      +       ++   +S+  
Sbjct: 400 QAEQTLAEEKAVSAEAQRQTELLNQQVAELRAQLGNLQALLDDAVARDAANSVELQSLGS 459

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-- 227
           E N  L  ++ E+    + +   +   ++ S  L+   ++   +       + G+ I   
Sbjct: 460 ELNTALARVAAEERRRAEMEAAERKRLEEESKDLAQYRSEFFGRLRNLLGNQEGVRIEGD 519

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN 279
                +  +F + S++   +    + K+  +L        A    VI + GHTD  P   
Sbjct: 520 RFVFSSEVLFGQGSAVLSQDGQGEIAKVAGILRSVVDDIPAEIDWVIRVDGHTDNVPLSG 579

Query: 280 --IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
                DNW LS  RA S  + ++   G++ DR++  +GF  ++     +   +   NRRI
Sbjct: 580 FGEFADNWELSQARALSVVKYMVNFLGIAPDRLAA-NGFGQYQPVAEGNTEAARAQNRRI 638

Query: 335 DI 336
           ++
Sbjct: 639 EL 640


>gi|293605866|ref|ZP_06688236.1| OmpA family protein [Achromobacter piechaudii ATCC 43553]
 gi|292815653|gb|EFF74764.1| OmpA family protein [Achromobacter piechaudii ATCC 43553]
          Length = 216

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      + +   L+G +A           T     I I     + +
Sbjct: 43  QLSTRLEEEVKQRQEETQRRETLEQALAGPLAAG-------RVTLINGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +       L    E++ + G+TD    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPEGREILKTLIEPLAAYLKTHDEILMVSGYTDDQQVREGNRRFADNWDLSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+  GV    +   + F   +     A +   + NRR++I
Sbjct: 153 QRALTVTRALIDEGVPSATVFAAA-FGSEQPVASNADEEGRAKNRRVEI 200


>gi|224534343|ref|ZP_03674921.1| flagellar motor apparatus [Borrelia spielmanii A14S]
 gi|224514445|gb|EEF84761.1| flagellar motor apparatus [Borrelia spielmanii A14S]
          Length = 260

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIMVRMEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      + NW LS+ R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSVARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V+  +   ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVTSVENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248


>gi|126728270|ref|ZP_01744086.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37]
 gi|126711235|gb|EBA10285.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37]
          Length = 911

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 111/303 (36%), Gaps = 18/303 (5%)

Query: 56  ATDDDTKKAIEQYFNPFGKNLMTAS--KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
           + ++    A+ +          T          Q   E++   ++D + +  +  +    
Sbjct: 610 SLEEKLAAALAERMTAQTTAEETRDRLAAALARQREAEQALDTQLDEAEERQLLLSQARD 669

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           ++  T ++    +L+      + ++             +       S    +++  E N 
Sbjct: 670 ELAQTRERASQSQLKVEALNRNVAELRRQLGELQALLDDAKARDAASEVQLQNLGSELNA 729

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQ 231
            L  +++E+      ++  +   +     L    ++   +       R  I I       
Sbjct: 730 ALARVAQEERRRRVLEEEERKRLEAEKKDLEAYRSEFFGRLRQVVGDRDDIRIEGDRFVF 789

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPFRNIAR- 282
            +  +F++ S+   P     + K+  +L             +I + GHTD  P R  A  
Sbjct: 790 SSEVLFEQGSADLSPLGRREIAKVSNILRRLARDIPDEIDWIIRVDGHTDNVPVRGSAEF 849

Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            DNW LS  RA +  + ++ + G+  +R++  +GF  ++    ++   +   NRRI++ +
Sbjct: 850 EDNWDLSQARARAVVKDMIDNYGIPPNRLAA-NGFGEYQPVNPANTAEARAQNRRIELKL 908

Query: 339 EDR 341
            ++
Sbjct: 909 TEK 911


>gi|294624615|ref|ZP_06703288.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665275|ref|ZP_06730569.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601088|gb|EFF45152.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604952|gb|EFF48309.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 223

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246
           ++SS L   V     +    +T    +        ++++D     R   +F  +S    P
Sbjct: 43  QLSSRLDAEVRQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102

Query: 247 ETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299
           E   VL+ +     + L    E++ + G TD  P     R   DNW LS  RA +  + L
Sbjct: 103 EGREVLKSLATPLTQYLRARDEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +  GV    +   + F   +     A +   + NRR++I
Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200


>gi|221210851|ref|ZP_03583831.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221169807|gb|EEE02274.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 214

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       +++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|206562551|ref|YP_002233314.1| hypothetical protein BCAM0690 [Burkholderia cenocepacia J2315]
 gi|198038591|emb|CAR54550.1| putative outer membrane protein-OmpA family [Burkholderia
           cenocepacia J2315]
          Length = 214

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  +    ++   R + L  +   +L   +A  +  G +         I I       +
Sbjct: 38  GMQLQLTSKLEEAVRARQLEAQQRKSLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA       E++ + G  D        R   DNW LS 
Sbjct: 92  FALNSDQLQPAGRDLLKTLAVPLATYLKTRDEILMVSGFADDQQVHAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|172059479|ref|YP_001807131.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171991996|gb|ACB62915.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 316

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++TL+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 169 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 225

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   L+      + I GHTD          N  LS  RA +    L+   +   
Sbjct: 226 RQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 282

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 283 QMT-TTGVGPDQPIAPNDTAEGRARNRRIE 311


>gi|89070721|ref|ZP_01157983.1| flagellar motor protein [Oceanicola granulosus HTCC2516]
 gi|89043679|gb|EAR49884.1| flagellar motor protein [Oceanicola granulosus HTCC2516]
          Length = 1022

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 100/310 (32%), Gaps = 31/310 (10%)

Query: 51   MWIINATDDDTKKAIEQYFNPFGKNLMT----ASKGIFDEQNPPERSSQNKIDLSIDEHI 106
            M  +  T ++ ++A+                 A   + D Q      +     L  +  I
Sbjct: 725  MAALEQTTEEEREALRARLAEAVAARDAARQLADSRLTDLQRRDALLATANAALEGEAAI 784

Query: 107  TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
            +  +         Q  + +    ++  L +  + E   N +  ++   +           
Sbjct: 785  SAEAQREIALLNEQVTRLRNQVGSLQALLDVAEDEDRANQVQFEALGAQLNNALARAAAE 844

Query: 167  INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
              +          + +  A + ++ LQ         L  L+             R G+ I
Sbjct: 845  ERRRRELEEAERRRLEEEAARLEQDLQQFRSDFFGQLRQLLEG-----------REGVQI 893

Query: 227  --SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASP 276
                    +  +F   S+         +  + ++L             VI + GHTD  P
Sbjct: 894  AGDRFVFSSEVLFAPGSATLSNAGRAQIASVADLLRDIADDIPDGIDWVIRVDGHTDDLP 953

Query: 277  FRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSAN 331
                    DNW LS  RA S  + +    G   DR++  +GF  H+  I  D     +AN
Sbjct: 954  LSGTGEYADNWELSQARALSVVRYMEDFLGFPPDRLAA-NGFGEHQPLIDEDTEEARAAN 1012

Query: 332  RRIDILVEDR 341
            RRI++ + +R
Sbjct: 1013 RRIELKLTER 1022


>gi|298530630|ref|ZP_07018032.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510004|gb|EFI33908.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 241

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
            +D    T        +E   +  + +     ++++ R++DL          +    + +
Sbjct: 53  QQDTGFLTPKTAGRLPDEFVIIEDVLENPWEILEKEDRIKDLLFPEEELPPEISKSTLEE 112

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            +       GI + +       +F  + +   P+   +L ++  ++      +++ G+TD
Sbjct: 113 NLEILMRPEGIALMMT---GELLFPFAETRLQPQARQILDQVIPLVKAWPAPVNVAGYTD 169

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSAN 331
             P   I  DN+  + +RA +  + L+ + V + R+  +S +  H     ++     + N
Sbjct: 170 NIP--GIHMDNYEFAAERAMAVMEYLLINDVKQQRL-SVSAYGEHFPVGDNETEEGRARN 226

Query: 332 RRIDILVE 339
           RR++IL++
Sbjct: 227 RRVEILLK 234


>gi|118588929|ref|ZP_01546336.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614]
 gi|118438258|gb|EAV44892.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614]
          Length = 533

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                  V+  +      E ++ G  I +   R    FD +++   PE  ++++++ + L
Sbjct: 384 EDATIDTVSAQLAGLEGLEISQAGPAIML---RMRAQFDVAAATLRPEFQLLVEQVSQTL 440

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
                 I + GHTD+ P RN  R   NW LS++RA +   V+     +  R+ ++ G   
Sbjct: 441 DQVDGEILVVGHTDSDPIRNNPRFPTNWHLSVERAKAVAAVMESVLQTPGRV-QVEGRGA 499

Query: 318 HRLKIASDPMN--SANRRIDILVED 340
                 +      + NRR+++ ++ 
Sbjct: 500 DEPIAPNTSKEGKALNRRVEVFLKP 524


>gi|91776019|ref|YP_545775.1| OmpA/MotB [Methylobacillus flagellatus KT]
 gi|91710006|gb|ABE49934.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 214

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR+++  +++         +      + +T    + +SI    +   F    +   P   
Sbjct: 69  KRMEEQKRQMEEATKDTGVE------VSQTEDNQLKLSI---PSDISFASGKADIEPNFR 119

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           VVL      L ++    ++I GHTD +    I      LS++RA +    L+  G++  R
Sbjct: 120 VVLDNFATTLKNNPNTLVTIIGHTDNTGSDAINNP---LSVNRAANTRDYLIARGIAASR 176

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            + I G       +++D     + NRR++I V
Sbjct: 177 FT-IDGRGSREPLVSNDTPANRAKNRRVEIFV 207


>gi|189347037|ref|YP_001943566.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
 gi|189341184|gb|ACD90587.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
          Length = 229

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D  V+G   E    GI + + D     +F   S+     +   ++++  ++    +  + 
Sbjct: 87  DRDVEGATVERMGEGIRV-VFDS--GILFSTGSATITATSRDNIERLARIINRYDDTNVV 143

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD          N  LS  RA +   +L   GV   R+S + G+   R   +++  
Sbjct: 144 IEGHTDTV---GNEESNQLLSEHRAEAVSNLLKAYGVYGSRLSPV-GYGESRPVASNETE 199

Query: 328 NSA--NRRIDILV 338
           +    NRR++IL+
Sbjct: 200 SGRRLNRRVEILI 212


>gi|261417146|ref|YP_003250829.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373602|gb|ACX76347.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326585|gb|ADL25786.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 232

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+  +P ++  L      L  + +  I + GHT +      A  N +LS DRA S 
Sbjct: 124 FKAGSAELVPSSLKTLNAAIAGLKRNPKAKIEVEGHTSSD---GSAELNQQLSEDRANSV 180

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              +++ G+  DR++ + G+   R K   +++    ANRRI++ V +
Sbjct: 181 RNYMIEQGIDADRVTAV-GYGPSRPKGDNSTEAGRRANRRIELKVLN 226


>gi|237752655|ref|ZP_04583135.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430]
 gi|229376144|gb|EEO26235.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430]
          Length = 233

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG---VLFETTRTG 223
           + K     + P +  K   ++ +  ++++     S ++     N +     V  E    G
Sbjct: 37  LEKGSQSQINPPAPIKATPIETQVEMENVLNIFGSLITDYNEVNRISNGPSVELEEAERG 96

Query: 224 ILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRN- 279
           ++I I       +F   S+    P  I  L+++   L    + + ++  GHTD  P R  
Sbjct: 97  VIIRI---PEELLFATGSAELTNPSGIAFLKRLSLELLRMPKAVLVKAIGHTDNVPMRAN 153

Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
            +  DN  LS+ R  +  ++L+K G+ ++RI    G         +D   + + NRR+D+
Sbjct: 154 AVFADNLELSVARGVNVAELLLKQGLEKNRILG-GGEGEFSPIANNDIPALRAKNRRVDL 212

Query: 337 LV 338
            V
Sbjct: 213 YV 214


>gi|126440077|ref|YP_001060632.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126219570|gb|ABN83076.1| ompA family protein [Burkholderia pseudomallei 668]
          Length = 310

 Score = 89.6 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305


>gi|113867012|ref|YP_725501.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Ralstonia eutropha H16]
 gi|113525788|emb|CAJ92133.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Ralstonia eutropha H16]
          Length = 308

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S +       +L +  + VLAH    + + GHTD++        N  LS  RA + 
Sbjct: 207 FETDSDVLSAAARPLLDRAAKAVLAHPDWRLRVEGHTDST---GGDARNQPLSERRAAAV 263

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            + L  +GV  DR+    G+      +++D     + NRR+++
Sbjct: 264 RRYLESAGVPADRLDA-KGYGATHPLMSNDTPFGRAQNRRVEL 305


>gi|167589926|ref|ZP_02382314.1| hypothetical protein BuboB_31618 [Burkholderia ubonensis Bu]
          Length = 215

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A+K++++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAIKQRQQEAQQRKTLERALAGPLAAG-------RVTLVNGRIGI---AGNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L+       E++ I G  D        R   DNW LS 
Sbjct: 92  FALNSDQLQPEGKELLKTLAGPLSAYLKTRDEILMISGFADDQQVHAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  +  + +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRAFIDAGVPAASVFAAA-FGSEQPVSSNADDAGRAKNRRVEIAPVPRK 205


>gi|83941363|ref|ZP_00953825.1| flagellar motor protein [Sulfitobacter sp. EE-36]
 gi|83847183|gb|EAP85058.1| flagellar motor protein [Sulfitobacter sp. EE-36]
          Length = 582

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 16/192 (8%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S+  + N  L  ++ E+    K +   +   +  +  L    ++   +       + G+
Sbjct: 392 QSLGSDLNTALARVAAEERRRAKLEAAERARLEAETKNLEQYRSEFFGRLRALLGNQEGV 451

Query: 225 LIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDA 274
            I        +  +F   ++    +    + K+  +L             VI + GHTD 
Sbjct: 452 RIEGDRFVFSSEVLFPPGAATLSADGRGEIAKVAGILRNIAADIPPEIDWVIRVDGHTDN 511

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA- 330
            P   +    DNW LS  RA S  + ++   G++ +R++  +GF  ++     +   +  
Sbjct: 512 QPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQPVARGNTEAARA 570

Query: 331 -NRRIDILVEDR 341
            NRRI++ + +R
Sbjct: 571 QNRRIELKLTER 582


>gi|311695725|gb|ADP98598.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 269

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 97/248 (39%), Gaps = 22/248 (8%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN- 168
             D ++    +        +     S  +Q    ++ L R     ++   + ++E +   
Sbjct: 25  PKDNQMVDEAKAAYEDIRTDPDVARSGDRQLRSARDQLARAERLLEEGASTAEIEHAAYL 84

Query: 169 -------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF---E 218
                    E      L ++   A +R+K L+  A+   +  +   A  + + +     E
Sbjct: 85  ANRHAEIAREQAERAKLQQQINSAEERRKELELQARSAEAQAAQQEAAELRRQMEAMQAE 144

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277
            T  G+++++ D     +FD + +   P     + ++ E +A      + + G+TD++  
Sbjct: 145 QTDRGMVLTLGD----VLFDLNRAELKPAGETTVGRLAEFMAEYENRRVRVEGYTDST-- 198

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N +LS  RA +  + LM  G++  RI  + GF        ++       NRR++
Sbjct: 199 -GAESYNQQLSERRAEAVREALMDRGINRARIE-VQGFGEQYPVATNETPAGRQQNRRVE 256

Query: 336 ILVEDRQG 343
           I++ D  G
Sbjct: 257 IVISDADG 264


>gi|15594625|ref|NP_212414.1| flagellar motor protein MotB [Borrelia burgdorferi B31]
 gi|195941366|ref|ZP_03086748.1| flagellar motor protein MotB [Borrelia burgdorferi 80a]
 gi|216264425|ref|ZP_03436417.1| flagellar motor apparatus [Borrelia burgdorferi 156a]
 gi|218249216|ref|YP_002374803.1| flagellar motor apparatus [Borrelia burgdorferi ZS7]
 gi|221217732|ref|ZP_03589200.1| flagellar motor apparatus [Borrelia burgdorferi 72a]
 gi|223888999|ref|ZP_03623590.1| flagellar motor apparatus [Borrelia burgdorferi 64b]
 gi|224533159|ref|ZP_03673759.1| flagellar motor apparatus [Borrelia burgdorferi WI91-23]
 gi|224533695|ref|ZP_03674283.1| flagellar motor apparatus [Borrelia burgdorferi CA-11.2a]
 gi|225549020|ref|ZP_03769995.1| flagellar motor apparatus [Borrelia burgdorferi 94a]
 gi|225550090|ref|ZP_03771050.1| flagellar motor apparatus [Borrelia burgdorferi 118a]
 gi|226320581|ref|ZP_03796141.1| flagellar motor apparatus [Borrelia burgdorferi 29805]
 gi|226321598|ref|ZP_03797124.1| flagellar motor apparatus [Borrelia burgdorferi Bol26]
 gi|1165265|gb|AAA85604.1| MotB [Borrelia burgdorferi]
 gi|1185054|gb|AAB58963.1| flagellar motor apparatus [Borrelia burgdorferi]
 gi|2688186|gb|AAC66668.1| flagellar motor rotation protein B (motB) [Borrelia burgdorferi
           B31]
 gi|215980898|gb|EEC21705.1| flagellar motor apparatus [Borrelia burgdorferi 156a]
 gi|218164404|gb|ACK74465.1| flagellar motor apparatus [Borrelia burgdorferi ZS7]
 gi|221192409|gb|EEE18628.1| flagellar motor apparatus [Borrelia burgdorferi 72a]
 gi|223885815|gb|EEF56914.1| flagellar motor apparatus [Borrelia burgdorferi 64b]
 gi|224511886|gb|EEF82287.1| flagellar motor apparatus [Borrelia burgdorferi WI91-23]
 gi|224512988|gb|EEF83351.1| flagellar motor apparatus [Borrelia burgdorferi CA-11.2a]
 gi|225369202|gb|EEG98655.1| flagellar motor apparatus [Borrelia burgdorferi 118a]
 gi|225370246|gb|EEG99684.1| flagellar motor apparatus [Borrelia burgdorferi 94a]
 gi|226232787|gb|EEH31540.1| flagellar motor apparatus [Borrelia burgdorferi Bol26]
 gi|226234000|gb|EEH32721.1| flagellar motor apparatus [Borrelia burgdorferi 29805]
 gi|312147980|gb|ADQ30639.1| flagellar motor apparatus [Borrelia burgdorferi JD1]
 gi|312149596|gb|ADQ29667.1| flagellar motor apparatus [Borrelia burgdorferi N40]
          Length = 260

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIVVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGEV---LAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           E    +QKI      L+       I GHTD   +      + NW LS  R+ +  +    
Sbjct: 143 ENRDSIQKIASFIGFLSPRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202

Query: 298 VLMKSGVSEDRI---SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   RI    ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSDV--KRIENNFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          +             + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 4  RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|311695446|gb|ADP98319.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 218

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G      R G  I ++       FD + S   P     L+ +  VL    + +I I G
Sbjct: 90  LEGTGVRVVRNGDEIELV-MPGNITFDLNESSIKPSFSGTLESVALVLKEYDKTIIQIEG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD+         N  LS  RA S    L+  G+   R ++  G+       ++D     
Sbjct: 149 HTDS---SGSDSYNQLLSERRASSVRDFLLNQGIEPKR-TRAVGYGERYPVASNDTAAGR 204

Query: 331 --NRRIDILVEDRQ 342
             NRR+++ +   Q
Sbjct: 205 EQNRRVELTLVPMQ 218


>gi|186472491|ref|YP_001859833.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194823|gb|ACC72787.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 166

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N   G+    T+ G+ + +       +F+ + S   P+    L ++  VL  + + + I 
Sbjct: 32  NKQAGIEVTQTKEGVQVRL---PEKVLFNFNESSLRPDAATALSRVVVVLNRTHKPMIIE 88

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD          N +LS  RA S    L + G+S  RI+ + G+A  R    ++    
Sbjct: 89  GHTDNV---GTREYNQQLSEARAKSVADELERRGISASRIT-LKGYAFDRPVADNNTPEG 144

Query: 328 NSANRRIDILVE 339
            + NRR +I+V 
Sbjct: 145 RARNRRTEIVVM 156


>gi|295681046|ref|YP_003609620.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1002]
 gi|295440941|gb|ADG20109.1| type IV / VI secretion system protein, DotU family [Burkholderia
           sp. CCGE1002]
          Length = 444

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 202 TLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            LS L+ D I +G VL E   +   +     R   +F    S   PE   VL ++ + +A
Sbjct: 306 RLSILLKDEIARGQVLVEENGSSSRVVF---RGDYVFLPGQSRIRPELDPVLSRVAQEVA 362

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                +++ GHTD  P       DN  LS  RA     V+   GV   RI  I G    +
Sbjct: 363 RVGGKVTVTGHTDNQPIHTAEFPDNQVLSEKRAAFVADVMKAHGVPAIRIVAI-GKGDIQ 421

Query: 320 LKIASDP--MNSANRRIDILV 338
               +      S NRR+++ V
Sbjct: 422 PVADNTTAEGRSRNRRVEVFV 442


>gi|310823400|ref|YP_003955758.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396472|gb|ADO73931.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 611

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282
            I I   +   +F+   +    ++  +L ++  VL  +     + I GHTD         
Sbjct: 465 RIRI---KGNILFETGQAKIQKQSFKLLDEVASVLRRNPTLGPVLIEGHTDNV---GSRN 518

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            N  LS  RA +    L   G+   R+S   GF   +    +D     + NRR++
Sbjct: 519 YNVDLSQRRAKAVLDYLAGKGIDRKRLSS-KGFGFDQPIATNDTPLGRAKNRRVE 572


>gi|300114861|ref|YP_003761436.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540798|gb|ADJ29115.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113]
          Length = 249

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + D  +++ + L+     + ++    +     +     D  +   FD  S    P  +  
Sbjct: 87  MNDQQREMEAALAEERRRHQLEIQRLQDESLKL-----DIPSEVSFDHDSDALKPAFLPT 141

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L KI +VL    + V+ + GHTD++      + N  LSL RA +    L + G+   R+ 
Sbjct: 142 LDKIADVLKKYNKTVVHVIGHTDST---GAEKYNLDLSLRRAGNVALYLERQGIPSQRL- 197

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            I G   +  + ++   +    NRR++I+++ 
Sbjct: 198 SIYGRGENEPRASNATASGRQLNRRVEIILKP 229


>gi|124514812|gb|EAY56324.1| putative OmpA family protein [Leptospirillum rubarum]
          Length = 265

 Score = 89.6 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 103/246 (41%), Gaps = 26/246 (10%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD--LEKSINKEENY 173
           G  +      +L++    L N+   E+ K +     +K  D  K     L+    K++  
Sbjct: 22  GCASAPPHDSKLDSAQMSLQNALNDENLKQAAPEQLDKASDALKHARELLKNGAPKKDVD 81

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISS------TLSGLVADNIVKGVLFE-------TT 220
               L+ ++I   ++K++  +L K+I         +        ++ +  E        T
Sbjct: 82  HYVYLATQRIKIAEQKEKAAELQKEIKKASAHRDQIMLEANQAKIEHLKRELLKMKAKET 141

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
             G+++++       +FD + +   P  +  ++K+ E +    +  + I G+TD++    
Sbjct: 142 NRGLVLTL----GNVLFDLNKADLKPGGMRTIKKLAEFMQSDPKRNVMIEGYTDST---G 194

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
            A  N +LSL RA S    L+  G++  RI    G+       ++   +    NRR++I+
Sbjct: 195 TAAYNEKLSLKRAESVRDALVNDGINPQRIV-TKGYGPKYPIASNKTADGRQQNRRVEIV 253

Query: 338 VEDRQG 343
           + D +G
Sbjct: 254 ISDEKG 259


>gi|254254076|ref|ZP_04947393.1| Outer membrane protein [Burkholderia dolosa AUO158]
 gi|124898721|gb|EAY70564.1| Outer membrane protein [Burkholderia dolosa AUO158]
          Length = 616

 Score = 89.2 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   +   P +   + +  E++       I + G+TD          N RLS  RA 
Sbjct: 502 SLFDSGKAQLKPGSNRAMVRAIEMINAHPGKRIVVAGYTDN---AGNPDSNLRLSRARAQ 558

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           +    L+ + G+   +   I G+   R   ++D     + NRR++I +     
Sbjct: 559 AVRDWLIDASGIPATQF-AIQGYGDTRPIASNDAPDGRARNRRVEITLVPDTA 610


>gi|256819872|ref|YP_003141151.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581455|gb|ACU92590.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 360

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            I     T +FD   S+  P+   +L  I  ++  + +    + GHTD +        N 
Sbjct: 245 QINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHNL 301

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
           +LS DRA +  Q L + GVS+ R+    G+   R   +++       NRR++I +V+D Q
Sbjct: 302 KLSQDRADAIKQYLSRHGVSKKRLDA-KGYGQTRPIESNETERGKEINRRVEINVVKDNQ 360


>gi|221197269|ref|ZP_03570316.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221203942|ref|ZP_03576960.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221176108|gb|EEE08537.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221183823|gb|EEE16223.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 214

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       +++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+  GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDEGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|114778645|ref|ZP_01453461.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1]
 gi|114551110|gb|EAU53671.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1]
          Length = 226

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + K+ +     L A+     +  E  +   + I++  + +   FD +S+   P     L 
Sbjct: 79  MDKQQAEFNRQLAAEQQAHQIEVERLQNENLKITMNSEIS---FDYNSAQLKPAFTDTLN 135

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+ ++L       I I GHTD    R   + N +LS  RA +    L   GV   RI   
Sbjct: 136 KVADILKRYPRSTIRITGHTDN---RGSTQYNQQLSEQRAQAVKWYLSDRGVDPRRIIA- 191

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            G    + +  +D       NRR+++L+   Q
Sbjct: 192 EGRGELQPRATNDTEAGRQLNRRVEMLIVPDQ 223


>gi|116622076|ref|YP_824232.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225238|gb|ABJ83947.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 605

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 14/245 (5%)

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K++        ++  D      + +      E +     N  Q+   +N   R   + + 
Sbjct: 354 KLENEARLASARSETDRLKRENDAQATAALAETDRLKRENDAQATAAQNETDRLKRQNEA 413

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
              +   E    K EN      +K         K   +  K   + L   +       + 
Sbjct: 414 QALAAQNEADRLKAENEAQRVAAKAASDRAAGDKAQAEAEK---AQLRAQLLVQFNTVLQ 470

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              T  G+++++ D     +FD             L ++  +LA      + + G+TD+ 
Sbjct: 471 TRDTARGLIVNMSD----VLFDTGKFTLRAGAREKLARVAGILAGHPGLQMQVEGYTDSV 526

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                   N  LS  RA S    L  +G+    ++   G        ++D       NRR
Sbjct: 527 ---GSETSNQLLSERRATSVRDYLTSAGIPPASVTA-KGLGETLPVASNDNAAGRQQNRR 582

Query: 334 IDILV 338
           ++++V
Sbjct: 583 VELVV 587


>gi|300694450|ref|YP_003750423.1| transmembrane protein, ompa/motb motif [Ralstonia solanacearum
           PSI07]
 gi|299076487|emb|CBJ35807.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia
           solanacearum PSI07]
          Length = 215

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSKLADEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L        E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRELLKSLAGPLSAYLKSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +       D   + NRR++I
Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNTDDEGRAKNRRVEI 200


>gi|194099378|ref|YP_002002478.1| hypothetical protein NGK_1853 [Neisseria gonorrhoeae NCCP11945]
 gi|239999626|ref|ZP_04719550.1| hypothetical protein Ngon3_09112 [Neisseria gonorrhoeae 35/02]
 gi|240014801|ref|ZP_04721714.1| hypothetical protein NgonD_09194 [Neisseria gonorrhoeae DGI18]
 gi|240017250|ref|ZP_04723790.1| hypothetical protein NgonFA_08817 [Neisseria gonorrhoeae FA6140]
 gi|240081113|ref|ZP_04725656.1| hypothetical protein NgonF_07349 [Neisseria gonorrhoeae FA19]
 gi|240113325|ref|ZP_04727815.1| hypothetical protein NgonM_07083 [Neisseria gonorrhoeae MS11]
 gi|240116327|ref|ZP_04730389.1| hypothetical protein NgonPID1_08846 [Neisseria gonorrhoeae PID18]
 gi|240118614|ref|ZP_04732676.1| hypothetical protein NgonPID_09178 [Neisseria gonorrhoeae PID1]
 gi|240121324|ref|ZP_04734286.1| hypothetical protein NgonPI_06069 [Neisseria gonorrhoeae PID24-1]
 gi|240124157|ref|ZP_04737113.1| hypothetical protein NgonP_09504 [Neisseria gonorrhoeae PID332]
 gi|240126226|ref|ZP_04739112.1| hypothetical protein NgonSK_08443 [Neisseria gonorrhoeae SK-92-679]
 gi|240128827|ref|ZP_04741488.1| hypothetical protein NgonS_09423 [Neisseria gonorrhoeae SK-93-1035]
 gi|293398468|ref|ZP_06642646.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62]
 gi|193934668|gb|ACF30492.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|291610939|gb|EFF40036.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62]
 gi|317164880|gb|ADV08421.1| hypothetical protein NGTW08_1460 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 225

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             + G   E  R G  I ++    +  F   S+         L    + L    +  ++I
Sbjct: 86  QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 144

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +   + A +N  LS  RA +    L   GV+  R++ + G+  H    ++    
Sbjct: 145 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 200

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 201 GRAQNRRVEILINPDQ 216


>gi|330824057|ref|YP_004387360.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329309429|gb|AEB83844.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 912

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    +K ++R +    +  +TL   +A  +  G     T     I I     + +
Sbjct: 738 GMQMELAERLKTEQRQRAEQARRLTTLEQALAGPLAAG---RVTLQDGRIGIS---GSVL 791

Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIA-----RDNWRL 287
           F  +S    PE   +L+ +       L    E++ + G TD  P R         DNW L
Sbjct: 792 FAFNSDELQPEGRQLLRSLSAPLAAYLRERGEILMVSGFTDDRPMRGGGGNARFADNWEL 851

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343
           S  RA +  + L+  G+   ++   +  A   +   +D    + NRR+++    R  
Sbjct: 852 SAQRALTVTRALIDEGIPSAQVFAAAFGAEQAVASNADAEGRARNRRVEMAPMPRPA 908


>gi|167571440|ref|ZP_02364314.1| ompA family protein [Burkholderia oklahomensis C6786]
          Length = 308

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 21/285 (7%)

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           A+     P     + A  G+  +  P    +      +       +              
Sbjct: 27  ALADNVGPATVTPIDAG-GVPVKSTPLAAPAPAAASGAGGGATVSSPPPANATPGQVVAG 85

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            +  +         +  +    +   D  +  D+    +   ++ K     L  +SK ++
Sbjct: 86  GKVADEATKAAVLQRLRDTYGAANVVDQIEVGDVATPPNWSANVQKLIGPQLKQISKGQL 145

Query: 184 LAMKRK----------KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                +           + Q LA  +++ L+      I  G+    +  G+L   +  R 
Sbjct: 146 KIDGTQIDVKGEVHNEAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRT 203

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+  S+   P+   +L ++   LA  +   + I GHTD          N  LS  RA
Sbjct: 204 IE-FETGSATLTPQGRAILDQMAGALAKMSSRTVEIIGHTDN---SGNRASNIALSQARA 259

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
            +    L+  G++  +++  +G    +   ++D     + NRRI+
Sbjct: 260 DAVKGYLVAKGIASQQLT-TTGVGPDQPIASNDTNDGRARNRRIE 303


>gi|330502930|ref|YP_004379799.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328917216|gb|AEB58047.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 267

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +    +       + +  L  +R +     AK +S        +  +  +    T  
Sbjct: 86  AEIARQHSDISLNHERAAKLELERQRLQLTLREAKLLSVQQHNGWLEEQMVSLATSETER 145

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           G+++++ D     +FD   +   P     + K+ + L  +    + I G+TD +     A
Sbjct: 146 GLVMTLGDM----LFDAGRADLQPAANRTVLKLVQFLQINPQRRVRIEGYTDNT---GDA 198

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            +N  LS  RA +   +L+  GV   RI ++ G+         AS    + NRR++I+  
Sbjct: 199 AENLELSRARAQAVADLLVDLGVDAKRI-QVVGYGVDFPVAENASARGRAQNRRVEIVFS 257

Query: 340 DRQG 343
           D +G
Sbjct: 258 DERG 261


>gi|114327745|ref|YP_744902.1| hypothetical protein GbCGDNIH1_1081 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315919|gb|ABI61979.1| chemotaxis motB protein [Granulibacter bethesdensis CGDNIH1]
          Length = 350

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 125/347 (36%), Gaps = 24/347 (6%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +++    +  +    +    +  + V++   LV  +  A    T    E   +   + L 
Sbjct: 5   RRRNTSGENLHVWPGYVDALSTLLMVIIFVLLVFVLAQAFLSYTLAGKEHRLDELNRQLA 64

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             S+    EQ    + + +   L  +    + +   L+  +    +Q  RLE+ +     
Sbjct: 65  IISRQFALEQQHSTQLAHSLERLRNEAAGKEADMARLRTQTVVLAEQKSRLESQLAGRDQ 124

Query: 137 SQQSEHCKNSLTRDSEKGKDLC--KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +    K +    +   KD    +  D  ++I ++       L   +  +  + + + D
Sbjct: 125 DVKRAEAKLAELDQTIHSKDTALDRLRDDLEAIRRQLAAVQSALDASEKESQSKDRTIAD 184

Query: 195 LAKKISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPL 245
           L  +++  L+  V +         G L E       I ++      ++  +F   ++   
Sbjct: 185 LGMRLNVALAEKVEELKKYRSEFFGKLREVLAGRPGIQVVGDRFVFQSDVLFPSGNADLT 244

Query: 246 PETIVVLQKIGEVLAHS-----TEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296
            +    ++ I   L          V   + + GH D     N     NW LS  RA +  
Sbjct: 245 EQGRQQVKDIAAALIQLSKKFPPNVNWLLRVDGHADRQKMVNGKFASNWELSAQRAINVA 304

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           ++L++ GV  + +S    FA ++     D     + NRRI++ + DR
Sbjct: 305 RLLIEQGVPGNHVSA-DAFADYQPVSQGDSEADLAKNRRIELRLTDR 350


>gi|107027050|ref|YP_624561.1| hypothetical protein Bcen_4708 [Burkholderia cenocepacia AU 1054]
 gi|116691753|ref|YP_837286.1| hypothetical protein Bcen2424_3655 [Burkholderia cenocepacia
           HI2424]
 gi|170736247|ref|YP_001777507.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|254248991|ref|ZP_04942311.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
 gi|105896424|gb|ABF79588.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116649753|gb|ABK10393.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|124875492|gb|EAY65482.1| Flagellar motor protein [Burkholderia cenocepacia PC184]
 gi|169818435|gb|ACA93017.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 214

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  +    ++   R + L  +   +L   +A  +  G +         I I       +
Sbjct: 38  GMQLQLTSKLEEAVRARQLEAQQRKSLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA       E++ I G  D        R   DNW LS 
Sbjct: 92  FALNSDQLQPAGRDLLKTLAGPLATYLKTRDEILMISGFADDQQVHAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + ++ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRAMIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|307728583|ref|YP_003905807.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583118|gb|ADN56516.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 620

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           I+  +  +F   S++  P +  VL    E++    +  + + GHTD+         N +L
Sbjct: 482 IELDSMSLFRSGSAVLNPGSNRVLIGALEMIKAHPDKRVLVAGHTDSV---GTPASNLKL 538

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           S  RA S    L  + G++  R   I G+   R K  +  +   +ANRR++I +  
Sbjct: 539 SEARAASVRDWLADASGIALTRF-AIQGYGDTRPKAPNSTEAGRAANRRVEITLVP 593


>gi|312130019|ref|YP_003997359.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906565|gb|ADQ17006.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 412

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +  LPE+   L ++ + L  +    I I GHTD       AR N +LS DR
Sbjct: 304 DKVYFNVGQAQILPESYEQLSQLVQYLKVNPTYKIQIEGHTDNQ---GDARANLQLSNDR 360

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           AY+  Q L++ G+   RI K  G+   +    +D       NRR++
Sbjct: 361 AYNVRQYLIEQGIETSRI-KFKGYGSSKPVSPNDTEENRRKNRRVE 405


>gi|242281268|ref|YP_002993397.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242124162|gb|ACS81858.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 242

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 68/158 (43%), Gaps = 9/158 (5%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           ++++ R++DL          +    + + +       G+ + + D     MF    S   
Sbjct: 84  LEKQNRIKDLLFPDDVLPPDMDRATLDENLKVLAKPEGVALVLTD---KLMFPLGKSELD 140

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
               ++L ++  VL +     ++I G+TD      +   N+RLS +RA +     ++ G+
Sbjct: 141 ERAKILLYQLVPVLDYLGSADVNIAGYTDN--VGGMRPSNFRLSGERAMAVLTYFVEQGI 198

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             DR++ +S         ++      + NRR++IL++ 
Sbjct: 199 MNDRLT-VSACGPTFPLYSNTTPEGRAQNRRVEILIKT 235


>gi|26990890|ref|NP_746315.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|148546893|ref|YP_001266995.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|24985904|gb|AAN69779.1|AE016614_5 OmpA family protein [Pseudomonas putida KT2440]
 gi|148510951|gb|ABQ77811.1| OmpA/MotB domain protein [Pseudomonas putida F1]
 gi|313497955|gb|ADR59321.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 270

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 20/188 (10%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           +   L  +  ++    L     +  L   +   +Q   K + S ++ L ++         
Sbjct: 94  EHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQGKWVESQIAALASEQA------- 146

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPF 277
               G+++++ D     +FD  S+         + K+ + L  +   +  I G+TD++  
Sbjct: 147 --DRGLVMTLGD----VLFDTGSADLKNSASRTVLKLVQFLQLNPRRVVRIEGYTDST-- 198

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                +N +LS DRA S   +L+  G+ E R+ ++ G+         AS+   + NRR++
Sbjct: 199 -GAGEENLKLSRDRAQSVADMLVDLGIDEKRL-QVEGYGDQYPIEANASERGRAQNRRVE 256

Query: 336 ILVEDRQG 343
           I+  D +G
Sbjct: 257 IVFSDDKG 264


>gi|302670731|ref|YP_003830691.1| flagellar motor protein MotB [Butyrivibrio proteoclasticus B316]
 gi|302395204|gb|ADL34109.1| flagellar motor protein MotB [Butyrivibrio proteoclasticus B316]
          Length = 277

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 104/273 (38%), Gaps = 24/273 (8%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +E  P   + Q      ++  +    +   + S +  K  +   +     S     E   
Sbjct: 6   EEIKPGLPAWQGTFGDLMNLLLCFFVLLFSMASMDAAKFEEVAASFSSAFSIFSGGEMAI 65

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-----------Q 193
                  +    L + +    S+   +        ++ +  M +K+ +           Q
Sbjct: 66  GKGALIGDGVSQLTELSSYITSMGLAQAGDDADEERDAVGEMDQKELMEAAEEEQLEASQ 125

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            LA+KI + L      +I   V    T   + ++I   + + +FD        + I V+ 
Sbjct: 126 KLAEKIQAELEE---GDIEDVVSLNYTSQFVQLTI---QGSILFDSGKVEIKSDAIPVID 179

Query: 254 KIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG-VSEDRI 309
           K+G++L +++   + I GHTD  P  +  +  +N  LS  RA + +  L+++  +    +
Sbjct: 180 KVGQILESYAGGTVDIEGHTDNVPMSSGGKYANNDELSSGRALAVFNYLVENTTLDPANL 239

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              +G   +      ++D   S NRR++I + +
Sbjct: 240 IH-TGRGEYDPIADNSTDEGRSRNRRVEIKIYN 271


>gi|149925995|ref|ZP_01914258.1| OmpA/MotB [Limnobacter sp. MED105]
 gi|149825283|gb|EDM84494.1| OmpA/MotB [Limnobacter sp. MED105]
          Length = 179

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+    E    L    +VL++       I + GH DA      A  N  LS +RA 
Sbjct: 78  FQLGSAELPAELKKQLDVFAQVLSNRPSDSPPIVVTGHADA---SGDASLNQVLSSERAK 134

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +    L + GVS  R+ ++ G    +L   ++P   ANRR++I
Sbjct: 135 AVKTYLTQKGVSP-RLLRVEGKGAEKLVDVNNPFAPANRRVEI 176


>gi|259417312|ref|ZP_05741231.1| OmpA/MotB domain protein [Silicibacter sp. TrichCH4B]
 gi|259346218|gb|EEW58032.1| OmpA/MotB domain protein [Silicibacter sp. TrichCH4B]
          Length = 519

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +L+ L+  + S L           +  + T   +LI + +      F   S     +   
Sbjct: 375 QLERLSAALESELET-------GQIELDRTNDWVLIRVSEALR---FRSGSEDLTSDIDS 424

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
           ++    + L      I + GHTD+ P     R   N +LS  RA +   +L     + DR
Sbjct: 425 LIASAAKALNAEQGPIRVVGHTDSVPMSGRGRFKSNEQLSKARAQTVADLLAAQLEAPDR 484

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I+ + G         +      + NRR++IL+
Sbjct: 485 IT-VEGKGPVDPIADNGTREGRARNRRVEILI 515


>gi|83718754|ref|YP_443463.1| OmpA domain-containing protein [Burkholderia thailandensis E264]
 gi|167621163|ref|ZP_02389794.1| OmpA domain protein [Burkholderia thailandensis Bt4]
 gi|257137752|ref|ZP_05586014.1| OmpA domain-containing protein [Burkholderia thailandensis E264]
 gi|83652579|gb|ABC36642.1| OmpA domain protein [Burkholderia thailandensis E264]
          Length = 311

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 22/270 (8%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
               G        G      PP  ++  ++                     +    QRL 
Sbjct: 56  LAAPGAAANGTGTGAIVSSPPPANAAPGQVVAGG----------KVADEATKAAVLQRLR 105

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +     +   Q E   N  T  +             K I+K +          K      
Sbjct: 106 DTYGAANVVDQIE-VGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNE 164

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            +R Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 165 AQR-QQLASDMANALNPTYM--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 220

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA      + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 221 RTILDQMAGALAKMPNRTVEIIGHTDN---SGNRASNIALSQSRADAVKGYLVTKGIASQ 277

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +   ++D     + NRRI+
Sbjct: 278 QLT-TTGVGPDQPIASNDSADGRARNRRIE 306


>gi|289679931|ref|ZP_06500821.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 190

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           LS+E++  M  +++   LA    K  S+   G   ++ +  +    T  G+++++ D   
Sbjct: 20  LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDRGLVMTLGD--- 76

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD   +         + K+ + L  +   +  I G+TD++      +DN +LS DRA
Sbjct: 77  -VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRA 132

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            +   VLM  GV E RI  + G+       A+  +   + NRR++I+  D +G
Sbjct: 133 QAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTFERGRAQNRRVEIVFSDEKG 184


>gi|313201307|ref|YP_004039965.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312440623|gb|ADQ84729.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 222

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+++  +++    +G        GV    T     + + D  +   FD   S   P   
Sbjct: 73  RRMEEQKQQMEQATAGT-------GVQVSQTADN-RLKL-DIPSDISFDSGKSDIKPNFR 123

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL    + L  +    ++I GHTD +    +      LSL+RA  A   L+  GV+  R
Sbjct: 124 PVLDSFAQSLVANPATKVTIVGHTDNTGTDAVNNP---LSLNRANHARDYLVTRGVASSR 180

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +   G   H   +   SD   + NRR++I V + Q 
Sbjct: 181 FT-TEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216


>gi|295700038|ref|YP_003607931.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295439251|gb|ADG18420.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 217

 Score = 89.2 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           LS +    +K+++      K +   L+G +A           T     I I       +F
Sbjct: 44  LSNKLEHEVKQRQAETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVLF 93

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSLD 290
             +S+   PE   +L+ +   L+       +++ + G TD    R   R   DNW LS  
Sbjct: 94  ALNSAQLQPEGRALLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSAQ 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           RA +  + L+  G+    +   + F   +     A +   + NRR++I
Sbjct: 154 RALTVTRALIDEGLPASSVFAAA-FGSEQPVSSNADESGRAKNRRVEI 200


>gi|170692926|ref|ZP_02884087.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170141924|gb|EDT10091.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 218

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++++ + + +  +   TL   +A  +  G +         I I       +
Sbjct: 42  GVQLELSNKLEQEVKQRQVETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+       +++ + G TD    R   R   DNW LS 
Sbjct: 96  FALNSDQLQPQGRDLLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSA 155

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +  + L+++GV    +   + G        A +   + NRR++I
Sbjct: 156 QRALTVTRALIEAGVPAPSLFAAAFGSGQPVSSNADEQGRARNRRVEI 203


>gi|161521586|ref|YP_001585013.1| hypothetical protein Bmul_5051 [Burkholderia multivorans ATCC
           17616]
 gi|189352247|ref|YP_001947874.1| hypothetical protein BMULJ_03465 [Burkholderia multivorans ATCC
           17616]
 gi|160345636|gb|ABX18721.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189336269|dbj|BAG45338.1| putative flagellar motor protein [Burkholderia multivorans ATCC
           17616]
          Length = 214

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L  +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLRSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       +++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|218459695|ref|ZP_03499786.1| hypothetical protein RetlK5_09429 [Rhizobium etli Kim 5]
          Length = 91

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 257 EVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E+      V+ + GHTD  P       RDNW LS  RA S  + L+  GV  DR+   +G
Sbjct: 4   EIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AG 62

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDR 341
           F   +     D   +   NRRI++ + ++
Sbjct: 63  FGEFQPIAPGDTPEARATNRRIELKLTEK 91


>gi|262197986|ref|YP_003269195.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081333|gb|ACY17302.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 1755

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 205  GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +     VK  L + T   I+I      +   F+   +     +  +L  + +VL    E
Sbjct: 1615 PVENQGCVKEQLVQITDNQIIIL-----DRVYFETDKARIRSRSFALLNNVVQVLEAHPE 1669

Query: 265  --VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
               + I GHTD    R     N  LS  RA S    L+++GV   R+  + G+   R   
Sbjct: 1670 IANVRIEGHTDD---RGSDAYNLDLSDRRAASVVSFLIEAGVDPVRLQSV-GYGETRPVR 1725

Query: 322  -IASDPMNSANRRIDILVED 340
               S    +ANRR++  +  
Sbjct: 1726 ENGSREGRAANRRVEFHIVR 1745


>gi|86143203|ref|ZP_01061605.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
 gi|85830108|gb|EAQ48568.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
          Length = 279

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKG--VLFETTRTGI 224
              ++     LSK     + + K L+D +   IS  L   + D++ +   +  +   T +
Sbjct: 89  ESTKDKMRETLSKVDQNELAQAKSLEDSMNLAISYNLKKNLDDSVGEDEDIQVDIDETVV 148

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR- 282
           +I++ D     +F+  S     +   +L+++ +V+       + + GHTD    +  A  
Sbjct: 149 MINVSD---KLLFNSGSYRVSNKADGLLKRLADVINSEPAIKVMVEGHTDDQTVKPGAYI 205

Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            DNW LS++R+ +  + L     V   ++   +G + +   + +      + NRR  I++
Sbjct: 206 KDNWELSVERSTAIIRELQDKYNVDPAKLIA-AGRSSYLPLVDNATKEDRAKNRRTRIVI 264

Query: 339 ED 340
             
Sbjct: 265 LP 266


>gi|296313347|ref|ZP_06863288.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
 gi|296840164|gb|EFH24102.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
          Length = 225

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           + G   +  R G  I ++   N   F   S++        L    + L    +  ++I G
Sbjct: 88  LTGTQVQVQRQGNQIKLVMPENVT-FATGSAVLSNNAQFALNTAAQTLVQYPDTTLTING 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD +   + A +N  LS  RA +    L   GV+  R+  + G+  H    ++      
Sbjct: 147 HTDNT--GSDAVNN-PLSQHRAQAVAYYLQSRGVAASRL-AVYGYGSHMPVASNATAEGR 202

Query: 329 SANRRIDILVEDRQ 342
           + NRR++IL+   Q
Sbjct: 203 AQNRRVEILINPDQ 216


>gi|289208562|ref|YP_003460628.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288944193|gb|ADC71892.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
           N+      +  +   N+    +   +D     D   +        +     +  ++ +R+
Sbjct: 23  NVIPTQGERAPDEAANANGEPARDARDTAHRDDSHAAPR----NAVYLARDDDAVSARRQ 78

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVL-------FETTRTGILISIIDQRNTPMFDKSSS 242
             L +  + ++    G   D +   +         E  R G +I++I       F+ +S+
Sbjct: 79  HLLDEGHESVALDRVGFYMDVLTARLRQKLAGHDVEMEREGRIITLI-FPGAKAFETNSA 137

Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
              P+ +  L  +G+VL      +++I GHTD+         N  LS  RA S  + L  
Sbjct: 138 EIHPDMVSTLDALGQVLEEYDASLVTIAGHTDS---AGARGYNQHLSEQRALSVGRHLHD 194

Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +GV E RI  I G+   R    +D     + NRR+++ VE 
Sbjct: 195 NGVGEARIIAI-GYGPDRPIADNDTPHGRALNRRVELRVEP 234


>gi|119896572|ref|YP_931785.1| hypothetical protein azo0281 [Azoarcus sp. BH72]
 gi|119668985|emb|CAL92898.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72]
          Length = 214

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E   +++ + + + + ++    L   +A  +  G     T     I I     + +
Sbjct: 38  GVQMELASSLEAEVQKRRVEEQRREALEKALAVPLASG---RVTLANGRIGIS---GSVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   LA       E++ + G TD  P R+  R   DNW LS 
Sbjct: 92  FALNSDELQPDGRQLLKSLAPPLAAYLASHDEMLMVSGFTDDRPVRDSNRQFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            RA +  +VL++ GV    +   + F   +     A     + NRR++
Sbjct: 152 QRALTVTRVLVEEGVPSAAVFAAA-FGQEQPVASNADADGRARNRRVE 198


>gi|83749427|ref|ZP_00946420.1| Chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|207738949|ref|YP_002257342.1| outer membrane protein [Ralstonia solanacearum IPO1609]
 gi|83723907|gb|EAP71092.1| Chemotaxis motB protein [Ralstonia solanacearum UW551]
 gi|206592320|emb|CAQ59226.1| outer membrane protein [Ralstonia solanacearum IPO1609]
          Length = 215

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L+       E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A D   + NRR++I
Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 200


>gi|226943639|ref|YP_002798712.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
 gi|226718566|gb|ACO77737.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
          Length = 270

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 14/181 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             E+      ++  +   K + RLQ     A+ +++   G   +  + G     T  G++
Sbjct: 92  AREHGAQRQAAERLVELEKERDRLQLALSEARLLNAEQQGEWLEEQLLGRTTTETERGLV 151

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDN 284
           +++ D     +FD             + ++   L  +   +  I G+TD+       + N
Sbjct: 152 MTLGD----VLFDTGREELRSAATRTVVQVARFLRLNQRRVVRIEGYTDSQ---GDDQLN 204

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             LS  RA S   +L+  GV   R+ +++G+         AS    + NRR++I+  D +
Sbjct: 205 LELSRGRAQSVKDMLVDLGVDAGRV-QVAGYGEAYPVAENASSQGRARNRRVEIVFSDEE 263

Query: 343 G 343
           G
Sbjct: 264 G 264


>gi|111115105|ref|YP_709723.1| flagellar motor protein MotB [Borrelia afzelii PKo]
 gi|216263787|ref|ZP_03435781.1| flagellar motor apparatus [Borrelia afzelii ACA-1]
 gi|110890379|gb|ABH01547.1| flagellar motor rotation protein B [Borrelia afzelii PKo]
 gi|215979831|gb|EEC20653.1| flagellar motor apparatus [Borrelia afzelii ACA-1]
          Length = 260

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIIVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           +    +QKI     VL+       I GHTD   +      ++NW LS+ R+ +  +    
Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKNNWELSVARSVNMLEHILN 202

Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   +   ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248


>gi|170698903|ref|ZP_02889963.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170136156|gb|EDT04424.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 247

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++TL+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 100 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   L+      + I GHTD          N  LS  RA +    L+   +   
Sbjct: 157 RQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 213

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 214 QMT-TTGVGPDQPIAPNDTAEGRARNRRIE 242


>gi|325286203|ref|YP_004261993.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321657|gb|ADY29122.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 276

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 8/201 (3%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           N+LT D++          +  ++  +    L  +S E+++  K  K   +LA  +S  L 
Sbjct: 66  NALTEDNDAKLISADGAVISNNVKAKMRETLKNVSPEQLMGAKTLKDSMNLA--LSHNLK 123

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             +  N +             + +I   +  +F+ +S     +   +LQK+ +V+     
Sbjct: 124 KSIGTNSLNEDEDIAIDIDDTVVMISISDKLLFNTASYNVSNKADAILQKLADVINSEPS 183

Query: 265 -VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321
             + + GHTD+         DNW LS+ RA S  + L  K  V+ +++   SG + +   
Sbjct: 184 IEVMVEGHTDSRSISTPKVTDNWDLSVLRATSIVRKLQTKYNVAPEKLIA-SGRSSYVPL 242

Query: 322 IASDPM--NSANRRIDILVED 340
            ++D     + NRR  I++  
Sbjct: 243 ASNDTKEDRAKNRRTRIVILP 263


>gi|319764890|ref|YP_004128827.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|330827094|ref|YP_004390397.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317119451|gb|ADV01940.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
 gi|329312466|gb|AEB86881.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 214

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 7/139 (5%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
                +G     T+T      +D  +   F  + S   P    +L +  E L ++    +
Sbjct: 80  MQAATQGTGVTVTQTADNQLKLDIPSDISFATNRSDIQPSFRPILDRFAEGLRNNPNAEV 139

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            I GHTD++    I      LSLDRA S    L   GVS  RI  + G        ++D 
Sbjct: 140 RIIGHTDSTGNDAINDP---LSLDRATSTRNYLTARGVSGARIH-VDGRGSREPIASNDT 195

Query: 327 --MNSANRRIDILVEDRQG 343
               + NRR++I + +RQG
Sbjct: 196 AEGRARNRRVEIFMGERQG 214


>gi|153843472|ref|ZP_01993564.1| ATP-dependent protease La [Vibrio parahaemolyticus AQ3810]
 gi|149745319|gb|EDM56570.1| ATP-dependent protease La [Vibrio parahaemolyticus AQ3810]
          Length = 344

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L + I   L   +    ++    E     I+I +   R    F + S+   P+   ++++
Sbjct: 16  LMESIKKALEREIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLVRQ 69

Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSA 295
           I E++     ++ I GHTD       + R NW LS  RA S 
Sbjct: 70  IAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSV 111


>gi|118578992|ref|YP_900242.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501702|gb|ABK98184.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 224

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E  R G  +  +   +  +FD             L K    L  S   I I+GHTD++  
Sbjct: 93  EVVRDGENV-YVALPSGILFDTGKDELKTSAKESLAKAAATLKSSETNIIIQGHTDST-- 149

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
               + N  LS  RA      L  +GV   R++ I G+   R  + +D     + NRR+ 
Sbjct: 150 -GSDKINQPLSQRRANQVRDFLAANGVPSSRMTAI-GYGSSRPAVPNDTEVNRALNRRVQ 207

Query: 336 ILVEDRQ 342
           + +   +
Sbjct: 208 LEISPNE 214


>gi|255037862|ref|YP_003088483.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254950618|gb|ACT95318.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 525

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 30/258 (11%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P    + + ++  +      + V +  G     K  + +E  I Y   +   E    +  
Sbjct: 293 PKPAPADSAVEAPVAVVPPSDPVVMISGKVIDSKTNKPVEATIIYEDLTTGEEVGTATTN 352

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + + K +              N+     + +   +  ++K  +++A            
Sbjct: 353 PTTGEYKLVLPYGQKYSMRAVAPNFIAEGENIDLTDSTGKEKSFKEIAN----------- 401

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--- 265
               K +       G ++ +    N   F    +    E+   L +I   ++ +      
Sbjct: 402 ----KSLKLIPIEEGQIVRL----NNIFFATGKATLREESFPELNRIA--ISMTENKTLA 451

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I + GHTD +     A  N  LS +RA +  + L+  G+  DRI+   G+   +    +D
Sbjct: 452 IELGGHTDNT---GSAEFNVNLSQERADTVREYLIGKGIEPDRIAS-KGYGETKPVATND 507

Query: 326 P--MNSANRRIDILVEDR 341
                  NRR++  +  +
Sbjct: 508 TPEGQQQNRRVEFKILKK 525


>gi|253999219|ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985898|gb|ACT50755.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 222

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+++  +++    +G        GV    T     + + D  +   FD   S   P   
Sbjct: 73  RRMEEQKQQMEQATAGT-------GVQVSQTADN-RLKL-DIPSDISFDSGKSDIKPNFR 123

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL    + L  +    ++I GHTD +    +      LSL+RA  A   L+  GV+  R
Sbjct: 124 PVLDSFAQSLVANPATRVTIVGHTDNTGTDAVNNP---LSLNRANHARDYLVTRGVASSR 180

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +   G   H   +   SD   + NRR++I V + Q 
Sbjct: 181 FT-TEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216


>gi|237736307|ref|ZP_04566788.1| outer membrane protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421655|gb|EEO36702.1| outer membrane protein [Fusobacterium mortiferum ATCC 9817]
          Length = 203

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    E +R G  +++        F  +S+         L  I  VL    E  I + G
Sbjct: 75  LKNTEVEVSREGDNLNLY-LPGGVTFATNSANIASNFYGPLNSIASVLVQYPETRIVVNG 133

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASDPMN 328
           +TD +     A  N  LS  RA S     +  GV   R++ + G    + R   ++    
Sbjct: 134 YTDNT---GAASYNLDLSQRRANSVRDYFISQGVESYRVTSV-GHGINNPRATNSTAAGR 189

Query: 329 SANRRIDILVED 340
           + NRR++I +  
Sbjct: 190 AENRRVEIQILP 201


>gi|207722387|ref|YP_002252823.1| outer membrane protein [Ralstonia solanacearum MolK2]
 gi|206587566|emb|CAQ18148.1| outer membrane protein [Ralstonia solanacearum MolK2]
          Length = 215

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L+       E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRELLKSLAGPLSAYLQSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A D   + NRR++I
Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 200


>gi|114765948|ref|ZP_01444962.1| hypothetical protein 1100011001347_R2601_22192 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541762|gb|EAU44800.1| hypothetical protein R2601_22192 [Roseovarius sp. HTCC2601]
          Length = 360

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              I+ +     F   S+    E++ +L+ + +V++   +  I I GHTD+         
Sbjct: 246 RFEILSRAGNIYFGAGSARLSAESVPLLENLYDVVSRCPDLKIEIAGHTDSD---GSDAA 302

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
           N RLS  RA S  + L   G+ E R+  + G+   +      S    + NRRI+
Sbjct: 303 NLRLSELRAASVKEYLQGKGIPESRML-VVGYGEAQPLLENTSAANKARNRRIE 355


>gi|126453039|ref|YP_001067883.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|242315370|ref|ZP_04814386.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254198619|ref|ZP_04905040.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|126226681|gb|ABN90221.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|169655359|gb|EDS88052.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|242138609|gb|EES25011.1| ompA family protein [Burkholderia pseudomallei 1106b]
          Length = 310

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305


>gi|300698137|ref|YP_003748798.1| transmembrane protein, OmpA/MotB motif [Ralstonia solanacearum
           CFBP2957]
 gi|299074861|emb|CBJ54429.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia
           solanacearum CFBP2957]
          Length = 215

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L+       E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRELLKSLAGPLSAYLQSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A D   + NRR++I
Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVGSNADDEGRAKNRRVEI 200


>gi|254492090|ref|ZP_05105265.1| hypothetical protein MDMS009_2433 [Methylophaga thiooxidans DMS010]
 gi|224462642|gb|EEF78916.1| hypothetical protein MDMS009_2433 [Methylophaga thiooxydans DMS010]
          Length = 224

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + +  K++ + L+   A + ++    E     + I   D  N   FD  S+         
Sbjct: 69  MDNQQKEMEAALAEEQARHELEIQQLEN--ETLKI---DIANEVSFDFDSAALKSAFTPT 123

Query: 252 LQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ +VL      I  + GHTD+         N RLS  RA S        GV+  R+ 
Sbjct: 124 LSKVADVLQRYPNTIIHVVGHTDSV---GSESYNQRLSERRAQSVVDYFSSRGVATGRLY 180

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            I G      +  ++       NRR++I V+ 
Sbjct: 181 AI-GRGETEPRATNETEAGRQLNRRVEIFVKP 211


>gi|134292796|ref|YP_001116532.1| hypothetical protein Bcep1808_4087 [Burkholderia vietnamiensis G4]
 gi|134135953|gb|ABO57067.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 214

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++       +   L+G +A           T     I I       +
Sbjct: 42  QLTSKLEEAVRARRQEAQQRASLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA       E++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPAGRDLLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + F   +     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRALIDAGVPAPSVFAAA-FGSQQPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|16262781|ref|NP_435574.1| outer membrane protein [Sinorhizobium meliloti 1021]
 gi|307315940|ref|ZP_07595434.1| Protein of unknown function DUF2092, periplasmic [Sinorhizobium
           meliloti BL225C]
 gi|14523413|gb|AAK64986.1| outer membrane protein [Sinorhizobium meliloti 1021]
 gi|306898414|gb|EFN29107.1| Protein of unknown function DUF2092, periplasmic [Sinorhizobium
           meliloti BL225C]
          Length = 420

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           VK    E+ +  +        +   FD   S   P    +L  I   L +     + I G
Sbjct: 58  VKQYSKESMQQALQTREQYDVHGLSFDTGQSTLQPGAKPLLDDIATALKNFPDWSLRIVG 117

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           HTDA      A  N RLSL+RA +    L++ G+   ++   +G    R   ++  D   
Sbjct: 118 HTDA---SGSAESNERLSLERANTIKAALVERGIDAGKLLA-AGAGQSRPIASNETDEGK 173

Query: 329 SANRRIDIL 337
           + NRR++++
Sbjct: 174 ALNRRVELM 182


>gi|254254994|ref|ZP_04948311.1| Flagellar motor protein [Burkholderia dolosa AUO158]
 gi|124899639|gb|EAY71482.1| Flagellar motor protein [Burkholderia dolosa AUO158]
          Length = 214

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +   A++ +++     K +   L+G +A           T     I I       +
Sbjct: 42  QLTSQLDEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   LA       E++ + G  D    R   R   DNW LS 
Sbjct: 92  FALNSDQLQPEGRALLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRLFADNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            RA +  + L+ +GV    +   + G  H     A D   + NRR++I    R+
Sbjct: 152 KRALTVTRSLIDAGVPASSVFAAAFGSEHPVSSNADDEGRAKNRRVEIAPVPRK 205


>gi|325523338|gb|EGD01688.1| Outer membrane protein [Burkholderia sp. TJI49]
          Length = 552

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   +   P++   +    E++    +  I + G+TD          N +LS+ RA 
Sbjct: 443 SLFDSGKAQLKPDSTRAMVGALEMIKTHPDKRILVAGYTDNV---GHPDSNLKLSVARAQ 499

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +    L+++ G+   +   I G+   R    +D     + NRR++I +  
Sbjct: 500 AVRDWLIEASGIPATQF-AIQGYGDTRPIADNDTPEGRARNRRVEITLVP 548


>gi|59801892|ref|YP_208604.1| hypothetical protein NGO1559 [Neisseria gonorrhoeae FA 1090]
 gi|260439855|ref|ZP_05793671.1| hypothetical protein NgonDG_01984 [Neisseria gonorrhoeae DGI2]
 gi|291043130|ref|ZP_06568853.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|59718787|gb|AAW90192.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|291012736|gb|EFE04719.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|307075938|emb|CBE70801.1| outer membrane protein A [Neisseria gonorrhoeae]
          Length = 225

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             + G   E  R G  I ++    +  F   S+         L    + L    +  ++I
Sbjct: 86  QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 144

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +   + A +N  LS  RA +    L   GV+  R++ + G+  H    ++    
Sbjct: 145 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 200

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 201 GRAQNRRVEILINPDQ 216


>gi|254467574|ref|ZP_05080983.1| YceI like family [Rhodobacterales bacterium Y4I]
 gi|206684322|gb|EDZ44806.1| YceI like family [Rhodobacterales bacterium Y4I]
          Length = 327

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
              I+ Q  +  F  S++     +   L  + +++     +I  + GHTD+      A  
Sbjct: 213 RFEILSQGRSVNFAPSTARLDASSRDFLNSLSDIIRRCPGMIVEVGGHTDSQ---GKAAW 269

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           N  LS  RA +  Q L K G+  +R+  + G+      + ++     + NRRI+  V +
Sbjct: 270 NMALSEKRAAAVNQYLQKKGIPSERLVAV-GYGETTPLVPNNTAQNRAKNRRIEFKVLN 327


>gi|167839895|ref|ZP_02466579.1| hypothetical protein Bpse38_24699 [Burkholderia thailandensis
           MSMB43]
          Length = 215

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    +  + R + L  +   TL   +A  +  G +         I I     + +
Sbjct: 39  GVQLELSSKLDAEVRQRQLESQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA     + E++ + G  D    R   R   DNW LS 
Sbjct: 93  FALNSDELQPAGRDLLKSLAGPLAAYLDANHEILMVSGFADDLQVRTGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  +  +  GV    +   + F   +     + D   + NRR++I
Sbjct: 153 KRALTVTRAFIDEGVPAASVFAAA-FGSEQPVSPNSDDAGRAKNRRVEI 200


>gi|126732831|ref|ZP_01748624.1| hypothetical protein SSE37_02990 [Sagittula stellata E-37]
 gi|126706670|gb|EBA05743.1| hypothetical protein SSE37_02990 [Sagittula stellata E-37]
          Length = 605

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
             + G+       +  ++         P+ +          RL D+   +          
Sbjct: 422 SQQAGRTQNGIAMMHFNLPDVTIERSAPVERTPPPPPVVVDRLDDIRTALEG-------- 473

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
              + V  +     ILI +    +   F    +    +   +   IG VL      I I 
Sbjct: 474 ---QEVEVDVKNEWILIRL---GSALRFASGRAELENDLSALATAIGVVLNEQPGPIRIV 527

Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASD 325
           GH+D+ P     R   N  LS  RA +    L+ + + +     + G          A+ 
Sbjct: 528 GHSDSVPLSGRGRFKTNEELSQARAQTVTD-LVTANLDDKERVSVEGKGPVDPIADNATA 586

Query: 326 PMNSANRRIDILVED 340
              + NRR++I++  
Sbjct: 587 EGRARNRRVEIMIRR 601


>gi|187929080|ref|YP_001899567.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J]
 gi|187725970|gb|ACD27135.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
          Length = 167

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           + L+ +  K+ + L+++I+  L+    +     V   T    I IS         F    
Sbjct: 2   EALSAQLAKQRESLSERIARALAP---EAGAAPVGISTKDDRIYISFNSDEG---FASGR 55

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM 300
           +  +      L ++  VLA +   +++ GHTD +P  R+    N  LS  RA +  + L 
Sbjct: 56  ADLMLMLARQLDRLATVLADTRGKVTVLGHTDDAPGPRDRMESNLALSTARATAVARHLQ 115

Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
           + G++ DR+S I  G         +    + NRR++I++E 
Sbjct: 116 ERGIASDRLSIIGRGVKDPVGDNRTAAGRALNRRVEIILES 156


>gi|161504516|ref|YP_001571628.1| hypothetical protein SARI_02629 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865863|gb|ABX22486.1| hypothetical protein SARI_02629 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 559

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD   S+  P  T +++  +  + A    +I + GHTD +      + N  
Sbjct: 420 IVRLDSMSLFDSGKSVLKPGSTKMLVNSLLGIKARPGWLIVVSGHTDNT---GSVQLNQT 476

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA +    +  +G   +    + G+   R   ++D     + NRR++I +  +
Sbjct: 477 LSLQRAEAVRNWMRDTGDVPESCFAVQGYGDSRPIASNDTPDGRAHNRRVEISLVPQ 533


>gi|53720708|ref|YP_109694.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
 gi|52211122|emb|CAH37110.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
          Length = 310

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305


>gi|317407132|gb|EFV87132.1| chemotaxis motB protein [Achromobacter xylosoxidans C54]
          Length = 218

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +K+++      + +   L+  +A           T     I I     + +
Sbjct: 45  ELSTQLEQEVKQRQEETQRRQTLEHALAAPLAAG-------RVTLINGRIGIS---GSVL 94

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   VL+ + E L      + E++ + G TD    R   R   DNW LS 
Sbjct: 95  FALNSDQLQPEGREVLKSLIEPLSAYLKANDEILMVSGFTDDQQVREGNRRFADNWDLSA 154

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVEDR 341
            RA +  + L+  GV    +   +  A   +   A +   + NRR++I+   +
Sbjct: 155 QRALTVTRALIDEGVPSSLVFAAAFGAEQPVASNADEEGRAKNRRVEIMPLPK 207


>gi|254461268|ref|ZP_05074684.1| flagellar motor protein [Rhodobacterales bacterium HTCC2083]
 gi|206677857|gb|EDZ42344.1| flagellar motor protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 760

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 19/249 (7%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
             ++ +  +   T+Q +      N       +Q S           +      +  +L  
Sbjct: 508 AARDELVQEQERTSQAQLQTEALNQQVAALRAQLSSLQAILDEAKIQDDASQVQLQNLGS 567

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLA---KKISSTLSGLVADNIVKGVLFETTRT 222
            +N           K + L    +KRL+  A   ++ +  L    ++   +       + 
Sbjct: 568 ELNAALARVAADERKRRELEEAERKRLEVEALALQEQTKDLERYRSEFFGRLRDVLGRQD 627

Query: 223 GILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHT 272
           G+ I        +  +F    +   PE    + K+  +L             +I + GHT
Sbjct: 628 GVRIEGDRFVFSSEVLFPPGRAALSPEGRGEVAKVASILLAVADDIPDGIDWIIRVDGHT 687

Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPM 327
           D  P   +    DNW LS  RA S  + ++   G+   R++  +GF   +      SD  
Sbjct: 688 DNVPLSGLGEFADNWELSQARALSVVKYMVNFLGIQPTRLAA-NGFGQFQPVNLEDSDEA 746

Query: 328 NSANRRIDI 336
            + NRRI++
Sbjct: 747 RAQNRRIEL 755


>gi|115372712|ref|ZP_01460018.1| hypothetical protein STIAU_6203 [Stigmatella aurantiaca DW4/3-1]
 gi|115370193|gb|EAU69122.1| hypothetical protein STIAU_6203 [Stigmatella aurantiaca DW4/3-1]
          Length = 334

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282
            I I   +   +F+   +    ++  +L ++  VL  +     + I GHTD         
Sbjct: 188 RIRI---KGNILFETGQAKIQKQSFKLLDEVASVLRRNPTLGPVLIEGHTDNV---GSRN 241

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            N  LS  RA +    L   G+   R+S   GF   +    +D     + NRR++
Sbjct: 242 YNVDLSQRRAKAVLDYLAGKGIDRKRLSS-KGFGFDQPIATNDTPLGRAKNRRVE 295


>gi|304312214|ref|YP_003811812.1| hypothetical protein HDN1F_25860 [gamma proteobacterium HdN1]
 gi|301797947|emb|CBL46169.1| Hypothetical protein HDN1F_25860 [gamma proteobacterium HdN1]
          Length = 222

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q +A +++  L   +   +V+    E     I+I I        F  +++   P+ + VL
Sbjct: 77  QQVAVRVALALKAPIERGLVE---VEAVGRYIVIRI---PEATCFPTNAATLRPQCLPVL 130

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSA-YQVLMKSGVSEDRI 309
             I   L    +   ++ GH+D  P        NW  +  RA +   ++L  +G S D  
Sbjct: 131 VTIRSALQGLEKARYTVAGHSDDVPINTARYSSNWEFAAARAGAVLVELLKATGFSADHF 190

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           +  S +   R  +A+      + NRR++++VE
Sbjct: 191 TLAS-YGPTRPLVANTSADNRARNRRVEVVVE 221


>gi|225552270|ref|ZP_03773210.1| flagellar motor apparatus [Borrelia sp. SV1]
 gi|225371268|gb|EEH00698.1| flagellar motor apparatus [Borrelia sp. SV1]
          Length = 260

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 22/168 (13%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246
           R K+    AK  + ++   +     K ++      GI+IS+        FD +S+     
Sbjct: 88  RNKQASQTAK--NKSMIEFIEKIQSKNIVVRQEERGIVISLAAD---AFFDSASADVKLE 142

Query: 247 ETIVVLQKIGEV---LAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297
           E    +QKI      L+       I GHTD   +      + NW LS+ R+ +  +    
Sbjct: 143 ENRDSIQKIASFIGFLSPRGYNFKIEGHTDNIDTDINGPWKSNWELSVARSVNMLEHILN 202

Query: 298 VLMKSGVSEDRI---SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L +S V   RI    ++SGF   R     D     + NRRIDIL+  
Sbjct: 203 YLDQSDV--KRIENSFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248



 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73
          +             + + Y D +T+L+ FF+ M+ +N     ++  + +   F   G
Sbjct: 4  RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60


>gi|187919624|ref|YP_001888655.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187718062|gb|ACD19285.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 320

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 89/272 (32%), Gaps = 12/272 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   +    + G           +      +I       +          K   +  +  
Sbjct: 49  PPAASASVGNAGPAVNTAGLASGTTGAGTGAITAAPPPANATPGQVVVGGKVPDEATKAA 108

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +                   ++       S +++K I  +         K     +  K 
Sbjct: 109 VLARLRDTYGAANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 168

Query: 191 RL--QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            +  +   ++++S ++  +     I  G+    +  G+L   +  R    F+  S+   P
Sbjct: 169 EVHNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 227

Query: 247 ETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +   +L ++   ++  +T+ ++I GHTD          N  LS  RA +    L+  G+ 
Sbjct: 228 QGRAILDQMAAAMVKMTTKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 284

Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRID 335
             ++   +G    +   ++D     + NRRI+
Sbjct: 285 PQQL-STTGVGPDQPIASNDTTDGRARNRRIE 315


>gi|87121845|ref|ZP_01077731.1| flagellar motor aparatus [Marinomonas sp. MED121]
 gi|86162874|gb|EAQ64153.1| flagellar motor aparatus [Marinomonas sp. MED121]
          Length = 258

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 5/188 (2%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S    N   +  +      K    E+     +   L P +     A   +    +  K
Sbjct: 54  AMSSKGANVSQQPDKYSDGGEKVIMPERQEVGIDKDLLVPTTDTASAAEALEAEKLEEIK 113

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            ++  +S  +    +  V+        LI  +D     +F+   S    ++  + +++ +
Sbjct: 114 AMAEVVSEQIEITQLSNVVTVLQNGDQLIITVD--GQTLFESGESELSWQSDYIFEELIK 171

Query: 258 VLA-HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +   +    I+I+GHTD  P R +    NW LS  RA +  +  ++ G+   R++  +G+
Sbjct: 172 MFKFYFEFSINIKGHTDNIPIRTVKFPSNWELSAIRATTVLRYFLEEGIGAQRMTA-TGY 230

Query: 316 AHHRLKIA 323
           A       
Sbjct: 231 ADSVPIAP 238


>gi|312796631|ref|YP_004029553.1| Chemotaxis motB protein [Burkholderia rhizoxinica HKI 454]
 gi|312168406|emb|CBW75409.1| Chemotaxis motB protein [Burkholderia rhizoxinica HKI 454]
          Length = 216

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  +    ++ + R + +  +   TL  ++A  +  G +         I I     + +
Sbjct: 39  GMQLQLSAKLENEVRQRQMETQRRKTLEQVLAGPLAAGRVTLVNG---RIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ + + L    +   E++ + G  D    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPEGRELLKSLAKPLRSYLSARDEILMVSGFADDQQVRAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            RA +  +  +  GV    +   + F   +     A D   + NRR++I    R
Sbjct: 153 QRALTVTRAFISEGVPASSVFAAA-FGSEQPVSSNADDAGRARNRRVEIAAVPR 205


>gi|114776523|ref|ZP_01451568.1| putative lipoprotein [Mariprofundus ferrooxydans PV-1]
 gi|114553353|gb|EAU55751.1| putative lipoprotein [Mariprofundus ferrooxydans PV-1]
          Length = 223

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           V+   T   + +++        F   S+    +    L  +  +L    +  ++I GHTD
Sbjct: 98  VVQRETPQALKLTLSRDAA---FASGSNELSEQGKQTLDDVATLLKRYKKTRLTITGHTD 154

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331
           ++      +    LS  RA +    ++  GVS DRI+  SG         +D     + N
Sbjct: 155 STGTALFNQS---LSERRALAVASYMISKGVSADRIAS-SGMGESSPAYPNDSAANRAKN 210

Query: 332 RRIDILVED 340
           RR++IL+  
Sbjct: 211 RRVEILITT 219


>gi|73537739|ref|YP_298106.1| hypothetical protein Reut_B3905 [Ralstonia eutropha JMP134]
 gi|72121076|gb|AAZ63262.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 215

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +     L  + K+R +++ ++   +L   +A  +  G +         I I     + +
Sbjct: 41  QMELTARLEKEAKQRQEEMQRR--ESLEKALAAPLAAGRVTLVNG---RIGI---NGSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   VL+ +   L+       E++ + G TD    R   R   DNW LS 
Sbjct: 93  FAINSDQLQPQGRDVLKSLAGPLSAYLRSRDEILMVSGFTDDQQVRERNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   +  A   +   A +   + NRR++I
Sbjct: 153 QRALTVTRALIDAGIPAASVFSAAFGAEQPVTSNADEAGRARNRRVEI 200


>gi|304319913|ref|YP_003853556.1| flagellar motor protein [Parvularcula bermudensis HTCC2503]
 gi|303298816|gb|ADM08415.1| flagellar motor protein [Parvularcula bermudensis HTCC2503]
          Length = 343

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 94/258 (36%), Gaps = 23/258 (8%)

Query: 98  IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157
           +++  D    K++    +GS+      +             +       L     +   L
Sbjct: 95  LEVLQDTIAEKDAQIASLGSSVAASAEELEVERALSEEQKAEIATLNAQLAALRRQLASL 154

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            ++ +  ++ + E+   +  LS+    A+ R  R+ +LA+  S  L  L A    +    
Sbjct: 155 QEALEAAEAKDVEQQAQIENLSQRLNAALAR--RVNELARVRSDFLEQLAAALEGRPGFR 212

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269
                 I+          +F   S+   P    VL+ +   +             V+ + 
Sbjct: 213 RDGDRYIV------EGDVLFGSCSTELTPAARDVLRTVAAAINDVRRDLDTDYEWVLRVD 266

Query: 270 GHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-S 324
           GH D  P     R +   N +LS  RA S  + L   GV  DR+   +GF      +A  
Sbjct: 267 GHADQVPLGAACRALFDSNLQLSTRRALSVVEFLSSQGVPADRLVA-AGFGDAYPLVAGR 325

Query: 325 DPMN-SANRRIDILVEDR 341
           DP + + NRRI+  + +R
Sbjct: 326 DPASLAQNRRIEFKLTER 343


>gi|124006466|ref|ZP_01691299.1| outer membrane protein [Microscilla marina ATCC 23134]
 gi|123987879|gb|EAY27559.1| outer membrane protein [Microscilla marina ATCC 23134]
          Length = 693

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
            G  I +    N   FD +     P +   L ++ ++L    +  I I GHTDA      
Sbjct: 579 QGQSIRL----NNLFFDYNQDTLKPSSYPELNRLIKILQKHPQMNIEISGHTDA---HGS 631

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A  N  LS  RA S  + L   G+++ R+ +  G+   R    +      + NRR++ L+
Sbjct: 632 ADKNLTLSQARANSVLRYLTTQGIAKQRL-RAKGYGQGRPVANNTTVAGRALNRRVEFLI 690

Query: 339 E 339
            
Sbjct: 691 L 691


>gi|146307724|ref|YP_001188189.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145575925|gb|ABP85457.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 270

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 11/184 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +    ++      + +  L  +R +     AK +S        +  +  +    T  
Sbjct: 89  AEIARQHSDSSLNQERAAKLELERQRLQLTLREAKLLSVQQHNGWLEEQMVSLATSETER 148

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           G+++++ D     +FD   +   P     + K+ + L  +    + I G+TD +     A
Sbjct: 149 GLVMTLGDM----LFDAGRADLQPAANRTVLKLVQFLQINPQRRVRIEGYTDNT---GSA 201

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            +N  LS  RA +   +L+  G+   RI ++ G+         AS    + NRR++I+  
Sbjct: 202 EENLELSRARAQAVADLLVDLGIDAKRI-QVVGYGVDFPVAENASARGRAQNRRVEIVFS 260

Query: 340 DRQG 343
           D +G
Sbjct: 261 DERG 264


>gi|238916758|ref|YP_002930275.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750]
 gi|238872118|gb|ACR71828.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750]
          Length = 266

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 68/324 (20%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               +       WK  ++D M +L+ FF++++ ++  D    + I    +     L    
Sbjct: 3   KQRTEDAPPAALWKDTFSDLMNLLLCFFVLLFAMSTVDSQKFEEIAASLSSSFSVLPQGG 62

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
             +  E       +    DLS                                       
Sbjct: 63  SALSKEGILVSSGASQLNDLS--------------------------------------- 83

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                +   +     D   S D++ + ++ E   L              ++ + +A++I 
Sbjct: 84  -----TFYNNMGLNNDGNMSQDIQNAYDEIEKEGL--------------EQSESMAQEIK 124

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L+   A  +   +        +++++       +FD   +   P+ + +L K+ + L 
Sbjct: 125 DKLT---ASGVADQIEVTAYSKYVMLNV---NGGILFDSGKAELTPQALTLLDKVADALI 178

Query: 261 HST-EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                VI+I GHTD  P        N  LSL RAYS +   +      D+    SG    
Sbjct: 179 EYDDNVITIEGHTDNVPINTSRYPNNMMLSLYRAYSVFDFFVSDKGFSDKTMSSSGRGDA 238

Query: 319 RLKIASDP--MNSANRRIDILVED 340
                +      + NRR++I V +
Sbjct: 239 VPIADNGTPEGRAQNRRVEIKVYN 262


>gi|77164341|ref|YP_342866.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|254434085|ref|ZP_05047593.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani
           AFC27]
 gi|76882655|gb|ABA57336.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|207090418|gb|EDZ67689.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani
           AFC27]
          Length = 248

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + D  +++ + L+     + ++    +     +     D  +   FD  S +  P  +  
Sbjct: 81  MNDQQREMEAALAEERRGHQLEIQRLQDESLKL-----DIPSEISFDHDSDVLKPAFLPT 135

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L KI EVL    + V+ + GHTD++      + N  LSL RA +      + GV   R+ 
Sbjct: 136 LDKIAEVLKKYNKTVVHVIGHTDST---GSEKYNLDLSLRRAGNVAVYFERKGVPSQRL- 191

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            I G      + ++        NRR++I+++ 
Sbjct: 192 SIYGRGESEPRASNATAAGRQLNRRVEIILKP 223


>gi|315225274|ref|ZP_07867091.1| OmpA domain protein [Capnocytophaga ochracea F0287]
 gi|314944957|gb|EFS96989.1| OmpA domain protein [Capnocytophaga ochracea F0287]
          Length = 360

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            I     T +FD   S+  P+   +L  I  ++  + +    + GHTD +        N 
Sbjct: 245 QINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHNL 301

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
           +LS DRA +  Q L + GVS+ R+    G+   R   +++       NRR++I +V+D Q
Sbjct: 302 KLSQDRADAIKQYLSRHGVSKKRLDA-KGYGQTRPIESNETERGKEINRRVEINVVKDNQ 360


>gi|162453582|ref|YP_001615949.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161164164|emb|CAN95469.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 104/268 (38%), Gaps = 10/268 (3%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
             L TA + +   +       +      +     + + + +  +   + Q  +      +
Sbjct: 57  AQLDTAKQALSRAEGAFGEEPEAPQTRDLAYIADRKAQEAEAAAALLQAQRDKAAAEDAF 116

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
              SQQ            ++  +  +    +    +++       ++    A ++ ++  
Sbjct: 117 KDLSQQQLASAREALHSGQQQIERERHARAQAETAQQQAESARLQAESARTAAEKARQEA 176

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + A++ +  ++     ++ +    +  + G++I++       +F    S  LP     L 
Sbjct: 177 EAARREAERVANAALASLKEIAAVKEEKRGVVITLS---GAVLFASGKSELLPIAKEKLS 233

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           ++   L       I I GHTD++     A+ N +LSL+RA +    L+ +G+  D+I+ +
Sbjct: 234 QVAATLKDQGSPPIRIEGHTDST---GSAQANRKLSLERADAVKAHLITAGLPGDKIATV 290

Query: 313 SGFAHHRLK--IASDPMNSANRRIDILV 338
            G    R     +S    + NRR++I+V
Sbjct: 291 -GHGPDRPVADNSSTEGRANNRRVEIIV 317


>gi|218887300|ref|YP_002436621.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758254|gb|ACL09153.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 307

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---- 281
           I I    +  +F   ++        +L +I  VL      + + GH  ASP R+      
Sbjct: 115 IQIFSINDEVLFRTGATELTERGAALLARIAPVLRGVEHPVLVAGH--ASPARDEEGILF 172

Query: 282 ---------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330
                       WRLSL RA + Y+ L   GV   R+  I      R +  +       A
Sbjct: 173 RLRGDEKTLPTPWRLSLGRATAVYRRLADLGVPRGRML-IEAHGDTRPRFDNLTPEGRRA 231

Query: 331 NRRIDILVEDRQG 343
           NRR+DI+++ R  
Sbjct: 232 NRRVDIVLDRRNA 244


>gi|255067217|ref|ZP_05319072.1| OmpA family protein [Neisseria sicca ATCC 29256]
 gi|255048585|gb|EET44049.1| OmpA family protein [Neisseria sicca ATCC 29256]
          Length = 261

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +K    E  R G  I ++   N   F   S+    +    L    E L    +  ++I
Sbjct: 121 ENLKNTNIEVERQGNQIKLVMPENVT-FATGSAALSDQARNALATASETLVQYPDTTLTI 179

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +        N  LS +RA +    L   GV+  R++  +G+       ++    
Sbjct: 180 NGHTDNT---GNDAINEPLSRNRALAVADYLQSRGVNGSRLT-TAGYGSRHPIASNATAE 235

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 236 GRAQNRRVEILINPDQ 251


>gi|261378300|ref|ZP_05982873.1| OmpA family protein [Neisseria cinerea ATCC 14685]
 gi|269145394|gb|EEZ71812.1| OmpA family protein [Neisseria cinerea ATCC 14685]
          Length = 225

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
           G   +  R G  I ++   N   F   S++        L    + L    +  ++I GHT
Sbjct: 90  GTQVQVQRQGNQIKLVMPENVT-FATGSAVLSDNAQFALNTAAQTLVQYPDTTLTINGHT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D +   + A +N  LS  RA +    L   GV+  R+  + G+  H    ++      + 
Sbjct: 149 DNT--GSDAVNN-PLSQHRAQTVAYYLQSRGVAASRL-AVYGYGSHMPVASNATAEGRAQ 204

Query: 331 NRRIDILVEDRQ 342
           NRR++IL+   Q
Sbjct: 205 NRRVEILINPDQ 216


>gi|329847657|ref|ZP_08262685.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19]
 gi|328842720|gb|EGF92289.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19]
          Length = 208

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G     TR+G  I I+       F   S+      + VL  +  +L       I + G
Sbjct: 79  LEGRNVYVTRSGDNI-ILSMPGDVTFSSGSADLNGGFMPVLNDVATILNQYPSTYIDVVG 137

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           H D+         N  LS  RA +    L+   V  +RI  ++G        ++D     
Sbjct: 138 HADSQ---GTDAFNMDLSERRANAVAGYLVGQKVKSERIY-VAGAGESSPIASNDTADGR 193

Query: 329 SANRRIDILVEDRQ 342
           + NRR++I +   Q
Sbjct: 194 ARNRRVEITLRPIQ 207


>gi|171060845|ref|YP_001793194.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778290|gb|ACB36429.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 229

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR++D  K + +   G   D      +  TT   + ++I    +   FD   S   P  +
Sbjct: 87  KRMEDKRKAMEAATQGTGID------VVRTTDNQLKVNIPADFS---FDVGRSAVKPVMV 137

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            VL K+ + L  +T  + + GHTD+S    +      LSLDRA +    L + GV   RI
Sbjct: 138 PVLDKLAQGL-DATVQVQVIGHTDSSGSDAVNNP---LSLDRAEAVRDYLSRHGVPAARI 193

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            ++ G         +      + NRR++I + + Q
Sbjct: 194 -QVEGRGEREPVADNATPDGRAQNRRVEIFLREPQ 227


>gi|319778561|ref|YP_004129474.1| OmpA/MotB domain protein [Taylorella equigenitalis MCE9]
 gi|317108585|gb|ADU91331.1| OmpA/MotB domain protein [Taylorella equigenitalis MCE9]
          Length = 959

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 28/228 (12%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
            G     ++   L   +     SQ      +      + G+   K  D        E   
Sbjct: 635 TGHVISDERKTELVTKLQEALGSQFKIDADDVDVETPDVGETENKPVDDTNFPTPAEQPA 694

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
                 E+        +  +LA  +   +S +  +N+   ++                  
Sbjct: 695 DQTAPAEQATTSSETAQTDELANVLD--ISEMSKENLDLHIV------------------ 734

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
             FD +SS   P+    L    + L  S     I G+TD          N +LS +RA S
Sbjct: 735 --FDSASSDIQPKYNDRLDAFAKYLIESNRTGEISGYTDNQ---GDDESNKKLSAERANS 789

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
               L+  GV E  I  + G+        ++      ANRRI+  V+D
Sbjct: 790 VRNYLVSKGVPETNIVAV-GYGEANPIADNNTPEGRLANRRIEFNVKD 836


>gi|87201185|ref|YP_498442.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
 gi|87136866|gb|ABD27608.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
          Length = 230

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +    +  L       GV    T  G  I +++  N   FD  SS   P     L ++ +
Sbjct: 77  QKDKQIRELREQTAGTGVDVTETDNGQAI-LVNLPNGVTFDVDSSTVKPAFATTLDRVAQ 135

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L       I + GHTD++        N  LS  RA +    L+  GV   RI +  GF 
Sbjct: 136 SLVQYPNSLIDVYGHTDST---GSDAYNQALSERRARAVADYLISRGVGYARI-RSQGFG 191

Query: 317 HHRLKIASDPM--NSANRRIDILVED 340
             +   ++D      ANRR++I +  
Sbjct: 192 ESQPIASNDTEQGRQANRRVEIKIVP 217


>gi|78189119|ref|YP_379457.1| OmpA family protein [Chlorobium chlorochromatii CaD3]
 gi|78171318|gb|ABB28414.1| OmpA family protein [Chlorobium chlorochromatii CaD3]
          Length = 233

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                D  V+G   +     I + + D     +F   SS     +   ++++  +L    
Sbjct: 86  QAAAIDQNVEGAQVQRVGESIRV-VFDS--GLLFTTGSSTISAASRSNIEQLARILNTYG 142

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + I GHTD+         N  LS  RA S   +L   GV+ +R+S + G+   R   
Sbjct: 143 DTNVVIEGHTDSI---GNEATNQVLSEKRAESVATLLKVYGVAPNRMSAV-GYGETRPVA 198

Query: 323 ASDPMNSA--NRRIDILV 338
            ++       NRR+++L+
Sbjct: 199 TNETEAGRNLNRRVEVLI 216


>gi|110680553|ref|YP_683560.1| hypothetical protein RD1_3382 [Roseobacter denitrificans OCh 114]
 gi|109456669|gb|ABG32874.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 659

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 23/278 (8%)

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           + AS    + +      SQ + +L+  + I+  +         Q    +    ++  + +
Sbjct: 382 IMASDTSSESERRAALLSQARAELAQQQDISARAQRQTELLNQQVAALRTQLGDLQAVLD 441

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             +       +   S   +           +  EE         E++   + K RL+  A
Sbjct: 442 DAKERDAAQQVQLQSLGSELNTALAR----VAAEERRRAALEEAERVRLQEEKARLEAEA 497

Query: 197 KKISST---LSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVV 251
            ++++    L    ++   +       + G+ I        +  +F+ + +    E    
Sbjct: 498 ARLTAQTKNLEQYRSEFFGRLRDVLGRQEGVRIEGDRFVFSSEVLFEPARADLSSEGQEE 557

Query: 252 LQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK 301
           + K+  +L+            +I + GHTD  P   + +  DNW LS  RA S  + ++ 
Sbjct: 558 IAKVARILSSVADEIPPEIDWIIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVD 617

Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           + G+  +R++  +GF   +     D     + NRRI++
Sbjct: 618 TLGIPPNRLAA-NGFGEFQPVAVEDTPEARAQNRRIEL 654


>gi|86131069|ref|ZP_01049668.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818480|gb|EAQ39640.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 470

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 91/275 (33%), Gaps = 28/275 (10%)

Query: 78  TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131
           T   GI+D+ +  PE +   + D   D        +K++     G            + I
Sbjct: 213 TDGDGIYDKDDACPEVAGLPEFDGCPDSDGDGIQDSKDACPTVAGLAEFDGCPDTDGDGI 272

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189
               ++  +     +L    +   D  K  D           N   P   K+    + + 
Sbjct: 273 PDPKDACPTVAGIAALGGCPDADGDGIKDADDNCPNEAGPRANNGCPYQDKDGDGVLDKD 332

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
               D+A  +++     V+  ++  +  ET                +FD + +    E+ 
Sbjct: 333 DECPDVAGTVANNGCPEVSVEVLNDLNVET-------------KKVLFDYNKASIRTESY 379

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  V+         I GHTD    R     N  LS  RA S    L   G+   R
Sbjct: 380 ATLDKVASVMMEYPTTRFLIEGHTDD---RGRDAYNLDLSDQRAASVRSYLTGKGIPASR 436

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +    GF   R   ++        NRR+++ + ++
Sbjct: 437 LES-KGFGEARPVASNKTAAGRQENRRVELSILEQ 470


>gi|167896107|ref|ZP_02483509.1| ompA family protein [Burkholderia pseudomallei 7894]
          Length = 243

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 96  EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 153 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 209

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 210 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 238


>gi|167847521|ref|ZP_02473029.1| ompA family protein [Burkholderia pseudomallei B7210]
          Length = 249

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 102 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 158

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 159 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 215

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 216 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 244


>gi|313205587|ref|YP_004044764.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312444903|gb|ADQ81258.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
 gi|315022683|gb|EFT35708.1| OmpA/MotB domain protein [Riemerella anatipestifer RA-YM]
 gi|325334983|gb|ADZ11257.1| Outer membrane protein related peptidoglycan-associated
           (lipo)protein [Riemerella anatipestifer RA-GD]
          Length = 230

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++   AK+I   L G            E    GI I++    NT  F   S+        
Sbjct: 81  KMDKQAKEIKEALPGA---------EVERVNEGIKITL--NENTVNFGFDSANLTSVAKT 129

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L K+ +VL ++ +  I++ GHTD+   R     N RLS  RA +    L   G++  R+
Sbjct: 130 NLDKLAQVLKNNPDTNINVYGHTDS---RGADDYNLRLSERRANAVVSYLSSLGIASSRM 186

Query: 310 SK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
                G A       +D   + NRR++  +   +
Sbjct: 187 IAKGVGEAEPIASNDTDEGRAKNRRVEFAITANE 220


>gi|85858897|ref|YP_461099.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB]
 gi|85721988|gb|ABC76931.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB]
          Length = 180

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277
            TR G L+++   +    FD +S+   P+    + ++  VL    +  I + G+TD+   
Sbjct: 54  VTREGNLLAVT-FKGDVTFDTNSAEIRPDLYFEIDRVAGVLKQYPDTFIRVEGYTDS--- 109

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           +     N  LS  RA +   +L++ GV+E+RI  + GF        +D       NRR++
Sbjct: 110 KGSDTYNMDLSKRRANAVKNLLVQRGVAENRIE-VVGFGETMPVATNDTEAGRQKNRRVE 168

Query: 336 ILV 338
           I +
Sbjct: 169 IKI 171


>gi|167740414|ref|ZP_02413188.1| ompA family protein [Burkholderia pseudomallei 14]
          Length = 245

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 98  EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 154

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 155 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 211

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 212 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 240


>gi|319953189|ref|YP_004164456.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421849|gb|ADV48958.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 604

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+     +   L+ I  +L  + +  +S+ GHTD +     +  N+ LS  RA + 
Sbjct: 501 FDTGSANISSSSQSTLETIYNLLIQAEDTKLSLEGHTDDT---GSSEANYDLSQRRAQAV 557

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L   G+ + R   + G           ++   + NRR+ I++ 
Sbjct: 558 VNFLRTKGIPQTRFQNVIGKGEDEPVESNTTNSGRAKNRRVVIVLL 603


>gi|167920717|ref|ZP_02507808.1| ompA family protein [Burkholderia pseudomallei BCC215]
          Length = 247

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 100 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 157 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 213

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 214 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 242


>gi|167589254|ref|ZP_02381642.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 246

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++ + + Q LA  +++TL+      I  G+    +  G+L   +  R    F+  S+  
Sbjct: 95  EVRNEAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 151

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+  VVL ++   L+      + + GHTD          N  LS  RA +    L+  G
Sbjct: 152 TPQGKVVLDQMAAALSKMPNRTVDLIGHTDN---SGNRASNIALSQARADAVKGYLITKG 208

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++  +++  +G    +    +D     + NRRID
Sbjct: 209 IASQQMT-TTGVGPDQPIAPNDTAEGRARNRRID 241


>gi|21674175|ref|NP_662240.1| OmpA family protein [Chlorobium tepidum TLS]
 gi|21647337|gb|AAM72582.1| OmpA family protein [Chlorobium tepidum TLS]
          Length = 231

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           V+G   E    GI + + D     +F   S+     +   ++K+  +L    +  + I G
Sbjct: 92  VQGAKVERVGEGIRV-VFDT--GLLFSTDSATLNANSRYNIEKLARILNRYNDTNVVIEG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD +        N  LS  RA S   +L   GVS  R++ I G+   R    ++     
Sbjct: 149 HTDNT---GTEASNQILSERRAESVATLLRTYGVSGRRLTAI-GYGETRPVATNETEAGR 204

Query: 331 --NRRIDILV-----EDRQG 343
             NRR+++L+       RQ 
Sbjct: 205 RLNRRVEVLIYANDALKRQA 224


>gi|312129863|ref|YP_003997203.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906409|gb|ADQ16850.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 300

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 11/231 (4%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q++      N+      S      ++       + + +   T L +S N+  N  L  L
Sbjct: 58  EQERDRVATTNSAKDNQISDLKSQIEDLRRVRDTQMERVGDLTVLNRSANENINKTLAQL 117

Query: 179 SKEK---ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
            K+     L    K +   L   ++  L   + D +    +         + +++  +  
Sbjct: 118 EKKDKYISLLQAAKSKADSLNLALAVNLKSALKDGLDDTDVDVKVDK--TVVMVNLSDKM 175

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAY 293
           +F   S    P    VL+K+  ++    +  + + G+TD          DNW LS+ R+ 
Sbjct: 176 LFTSGSYKISPRAYSVLEKVAAIIKSRPDLEVMVEGYTDNVSINTACIEDNWDLSVKRST 235

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           S  + L    GV  ++I   +G   +    ++      + NRR  I++  +
Sbjct: 236 SVVRTLQSKFGVDPNKIIA-AGRGEYNTLTSNSTAEGRAINRRTRIILMPK 285


>gi|295095728|emb|CBK84818.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 568

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD       P +  +L   +  + A    +I + GHTD++      + N  
Sbjct: 430 IVRLDSMSLFDTGKWALKPASTKLLVNSLVGIKAKPGWLIVVAGHTDST---GDDQSNQV 486

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA S    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 487 LSLKRAESVRDWMRDTGDVPESCFAVQGYGESRPVATNDTAEGRALNRRVEISLVPQ 543


>gi|99081935|ref|YP_614089.1| hypothetical protein TM1040_2095 [Ruegeria sp. TM1040]
 gi|99038215|gb|ABF64827.1| flagellar motor protein-like protein [Ruegeria sp. TM1040]
          Length = 784

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 19/207 (9%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVAD 209
                 +   L + +N           + ++L  + +KRL+   +++++    L    ++
Sbjct: 579 DAAQGIQLQSLGQDLNTALARAAAEERRRRMLEEQERKRLEAERERLANEAKDLEQYRSE 638

Query: 210 NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
              +       + G+ I        +  +F   S+         + K+  +L        
Sbjct: 639 FFGQLRSVLGNQEGVRIEGDRFVFASEVLFALGSAELSEAGKAEIAKVARILQNVAAAIP 698

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
                +I + GHTD   F    +  DNW LS  RA S  + ++   G+   R++  +GF 
Sbjct: 699 DDINWIIRVDGHTDNQRFVGAGKYADNWELSQGRALSVVRYMIDELGIPPGRLAA-NGFG 757

Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341
             +    +D     + NRRI++ + +R
Sbjct: 758 EFQPVNPADTPEARAQNRRIELKLTER 784


>gi|284924249|emb|CBG37350.1| putative type VI secretion protein [Escherichia coli 042]
          Length = 576

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 236 MFDKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRA 292
           +FD       P     ++  + ++ A +  +I + GHTD +  P RN A     LSL RA
Sbjct: 448 LFDAGKWTLKPGATKWLVNALVDIKAKAGWLIVVSGHTDNTGDPLRNQA-----LSLKRA 502

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            +    +  +G        + G+   R    +D     + NRR++I +  +
Sbjct: 503 EAVRDWMRDTGDIPQSCFAVQGYGESRPVAPNDTAEGRARNRRVEISLVPQ 553


>gi|225619153|ref|YP_002720379.1| outer membrane protein OmpA family [Brachyspira hyodysenteriae WA1]
 gi|225213972|gb|ACN82706.1| outer membrane protein OmpA family [Brachyspira hyodysenteriae WA1]
          Length = 403

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRG 270
             V  +T   G+++ +       +FD  S    PE    +  + + +  +     I + G
Sbjct: 280 DNVTIDTVPEGLVLRL----GEILFDTDSYTLKPEAKNTIDNVIKAIKETYPDREIIVEG 335

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD +        N  LS  RA S    ++ + +  D++    GFA      ++D     
Sbjct: 336 HTDNT---GRKEYNQDLSEKRAKSVADYILPN-LDHDKL-SYKGFADDEPIASNDTPDGR 390

Query: 329 SANRRIDILVEDR 341
             NRR+DI+++ R
Sbjct: 391 RKNRRVDIIIKLR 403


>gi|218696635|ref|YP_002404302.1| hypothetical protein EC55989_3336 [Escherichia coli 55989]
 gi|218353367|emb|CAU99387.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
          Length = 608

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 236 MFDKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRA 292
           +FD       P     ++  + ++ A +  +I + GHTD +  P RN A     LSL RA
Sbjct: 480 LFDAGKWTLKPGATKWLVNALVDIKAKAGWLIVVSGHTDNTGDPLRNQA-----LSLKRA 534

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            +    +  +G        + G+   R    +D     + NRR++I +  +
Sbjct: 535 EAVRDWMRDTGDIPQSCFAVQGYGESRPVAPNDTAEGRARNRRVEISLVPQ 585


>gi|167817630|ref|ZP_02449310.1| ompA family protein [Burkholderia pseudomallei 91]
          Length = 240

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 93  EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 149

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 150 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 206

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 207 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 235


>gi|167583014|ref|ZP_02375888.1| OmpA domain protein [Burkholderia thailandensis TXDOH]
          Length = 324

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 177 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 233

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA      + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 234 RTILDQMAGALAKMPNRTVEIIGHTDN---SGNRASNIALSQSRADAVKGYLVTKGIASQ 290

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +   ++D     + NRRI+
Sbjct: 291 QLT-TTGVGPDQPIASNDSADGRARNRRIE 319


>gi|85704170|ref|ZP_01035273.1| flagellar motor protein [Roseovarius sp. 217]
 gi|85671490|gb|EAQ26348.1| flagellar motor protein [Roseovarius sp. 217]
          Length = 563

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 16/192 (8%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S+  E N  L  ++ E+      ++    L +     L    ++   +       + G+
Sbjct: 373 QSLGNELNTALARVAAEERRRRIAEEERARLLEAEKEDLEKYRSEFFGRLRDVLGQQEGV 432

Query: 225 LI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDA 274
            I        +  +F    +         + K+  +L +    I         + GHTD 
Sbjct: 433 QIVGDRFVFSSEVLFAPGEAELSLAGEGEIAKVAGILRNVIGDIPEGIDWVLQVDGHTDD 492

Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA- 330
            P    AR  DNW LS  RA S  + L    G   +R+S  +G+   +     D   +  
Sbjct: 493 VPIVEGARFADNWALSQARALSVVRYLTGVLGFPAERLSA-NGYGEFQPVNPDDTAAARA 551

Query: 331 -NRRIDILVEDR 341
            NRRI++ +  R
Sbjct: 552 QNRRIELKLTTR 563


>gi|220922989|ref|YP_002498291.1| type IV / VI secretion system protein, DotU family
           [Methylobacterium nodulans ORS 2060]
 gi|219947596|gb|ACL57988.1| type IV / VI secretion system protein, DotU family
           [Methylobacterium nodulans ORS 2060]
          Length = 489

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  E T + +++ +       +F    +    E   +LQ++  ++A     I I GHTD+
Sbjct: 364 VTVEETNSQVVVRLA----AALFAPGDAAVTAEFRPLLQRVAGLIAREPGPIRIVGHTDS 419

Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
           +P RN     N+ LS+ RA +    +  +    +R+  + G         +D     + N
Sbjct: 420 APVRNGRFASNFDLSVARAKAVAAAIRAAPEKPERLE-VEGKGPDAPVAPNDTVEGRARN 478

Query: 332 RRIDILV 338
           RR++IL+
Sbjct: 479 RRVEILI 485


>gi|298207224|ref|YP_003715403.1| Thrombospondin type 3 repeat:OmpA/MotB [Croceibacter atlanticus
           HTCC2559]
 gi|83849860|gb|EAP87728.1| Thrombospondin type 3 repeat:OmpA/MotB [Croceibacter atlanticus
           HTCC2559]
          Length = 478

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 26/269 (9%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             + G+ +    P+  S    D   D      + +               +++   ++  
Sbjct: 232 PETPGLAEFNGCPDTDSDGIEDRKDDCPNVAGTAEFNGCPDTDGDGIPDPKDDCPTVAGI 291

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q    C ++     +  +D C +           N   P   K+    + +  +  D+A 
Sbjct: 292 QALNGCPDADGDGIKDSEDNCPNE-----AGPASNNGCPFEDKDGDGVLDKDDQCPDVA- 345

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
                  G VA+N    V  E         + +   T +FD + S    E+   LQ I +
Sbjct: 346 -------GTVANNGCPEVTVEVMNE-----LNEYSRTILFDLNKSTIRSESFETLQNIAD 393

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +++        I GHTD+         N +LS +RA S    L   GV+ ++++   G+ 
Sbjct: 394 IMSEYPTAKFHIEGHTDSQ---GSEAYNEKLSRERAASVRTYLTTKGVAANKLTS-EGYG 449

Query: 317 HHRLKIASDPMNSA--NRRIDILVE-DRQ 342
             R    +        NRR++I +E DR+
Sbjct: 450 ELRPIATNKTAAGRQQNRRVEIKLEKDRK 478


>gi|226939690|ref|YP_002794763.1| OmpA/MotB [Laribacter hongkongensis HLHK9]
 gi|226714616|gb|ACO73754.1| OmpA/MotB [Laribacter hongkongensis HLHK9]
          Length = 225

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +     ++ S L   ++   ++  L +     +++++ +      F+ +S++  P     
Sbjct: 78  MDRQKAELESKLRSEISSGQMQ--LQQNADQSLVVTMNEDAT---FNLNSAVVKPAFYPT 132

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+ E L    +  + IRG+TD++     A  N +LSL RA +    L+  GV+ +RI 
Sbjct: 133 MNKVAETLKQYNQTTLVIRGYTDST---GAAAYNQQLSLKRANAVKSYLVGQGVAANRIQ 189

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            I G      + ++D     + NRR+ I +  +QG
Sbjct: 190 TI-GMGESDPRASNDTAQGRAMNRRVSITIVPQQG 223


>gi|162454304|ref|YP_001616671.1| OmpA family outer membrane protein [Sorangium cellulosum 'So ce
           56']
 gi|161164886|emb|CAN96191.1| putative OmpA family outer membrane protein [Sorangium cellulosum
           'So ce 56']
          Length = 488

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+    ++   L ++  V+  + E   + + GHTD +        N  LS  RA +
Sbjct: 385 FRTGSAELEQDSYRTLDQVALVMKANPEIERLRVEGHTDET---GTPELNQELSEQRAET 441

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN-SANRRIDILVED 340
             + L++ GVS  R++   GF   R     +DP + + NRR++ ++++
Sbjct: 442 VRKYLIRKGVSPGRLTA-EGFGSDRPVAEGTDPASLAKNRRVEFVIDE 488


>gi|108757927|ref|YP_633347.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108461807|gb|ABF86992.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 476

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 225 LISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIA 281
            I I   +   +F   S      ++  VL  + + L  +     I I GHTD+       
Sbjct: 363 RIEI---KKQILFSSGSHKIYGKQSTAVLDDVAQALRDAPWIKRIRIEGHTDSM---GND 416

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             N RLS  RA +    L++ G+   RI  + GF   +    +      + NRR +  V
Sbjct: 417 ASNLRLSQRRADAVMAQLLRRGIDPGRIQAV-GFGETQPIAPNSTKTGRAMNRRTEFKV 474


>gi|77464614|ref|YP_354118.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126463454|ref|YP_001044568.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559507|ref|ZP_08413829.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|77389032|gb|ABA80217.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126105118|gb|ABN77796.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
 gi|332277219|gb|EGJ22534.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 228

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 +             +     G  L        S NK E   +   +   IL   
Sbjct: 26  SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L   A  + +++           V    T + +++++       +F   S+   P+
Sbjct: 85  VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L  + + L       I++ GHTD++     A  N  LS+ RA S   VL+ +GV  
Sbjct: 135 LQRDLGAVAQNLLRYPNSTIAVVGHTDST---GAAAYNQDLSMRRAQSVAGVLIGNGVPS 191

Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            R+S I G    +   ++      + NRR+DI++  
Sbjct: 192 YRVSAI-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226


>gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298590760|gb|EFI50962.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 464

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 19/229 (8%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
           + +  +K    ++E+ +   + + Q        +L+  S          D   +++ +  
Sbjct: 249 VSAIERKFVGVKIEDKLKASAGAPQGFLAATMTALSALSRLSTGTLTIQDRNVTLSGDAL 308

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y        + LA K  +  +  A+     ++  V   I + +L      G+L      +
Sbjct: 309 YPGANARISEELAAKLPQGWKQKAELTVKPVAAPVNATICQQLLT-----GLL-----AK 358

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F+   ++  P++  +L ++ E VL   T  I I GHTD++        N  LS+ R
Sbjct: 359 GTIQFETGKAVIDPDSAGLLDRLIEAVLRCPTSQIEIEGHTDSN---GEKEANLALSMRR 415

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           A +     +K+GV ++RIS + GF   R   ++D     + NRRI+ +V
Sbjct: 416 AQAVADYFIKAGVPKERISAV-GFGSERPVASNDTEEGKAQNRRIEFVV 463


>gi|120603975|ref|YP_968375.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120564204|gb|ABM29948.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
          Length = 259

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 41/197 (20%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTP 235
             +++K    ++   L +  K  +  L+ L     +KGV     +  G+L          
Sbjct: 52  EAAEQKQELTEKYDELTNARKTRAEMLTSLERSLKMKGVEVSIDKDHGLL----HIPEGI 107

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---------------------TEV---ISIRGH 271
           +FD  S+   PE    L  I E L+                             + + GH
Sbjct: 108 LFDSGSAALPPEGGRTLDIIAEQLSTLLPCYSGKADAPAPDECRDNYKPGRLEAVFVEGH 167

Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRISKISGFAHHRLK 321
           TD  P   R   +DNW LS  RA + Y+ L+           +  D +  +SG+A  R +
Sbjct: 168 TDNVPMPPRGGIQDNWDLSTKRAVTTYRHLLGHAPTLAAFVNLDGDPLFGVSGYAASRPR 227

Query: 322 IASD--PMNSANRRIDI 336
              D    ++ NRRID+
Sbjct: 228 NPHDTPTPDAQNRRIDL 244


>gi|259416340|ref|ZP_05740260.1| OmpA family protein [Silicibacter sp. TrichCH4B]
 gi|259347779|gb|EEW59556.1| OmpA family protein [Silicibacter sp. TrichCH4B]
          Length = 784

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 19/207 (9%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVAD 209
                 +   L + +N           + +IL  + +KRL+   +++++    L    ++
Sbjct: 579 DAAQGIQLQSLGQDLNTALARAAAEERRRRILEEQERKRLEAERERLANEAKDLEQYRSE 638

Query: 210 NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259
              +       + G+ I        +  +F   S+         + K+  +L        
Sbjct: 639 FFGQLRSLLGDQEGVRIEGDRFVFASEVLFALGSAELSEAGKTEIAKVARILQNVAAAIP 698

Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
                +I + GHTD   F    +  DNW LS  RA S  + +M   G+   R++  +GF 
Sbjct: 699 DDINWIIRVDGHTDNQRFSGTGKYADNWELSQGRALSVVRYMMDELGIPPGRLAA-NGFG 757

Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341
             +    +D     + NRRI++ + +R
Sbjct: 758 EFQPVNPADTPEARAQNRRIELKLTER 784


>gi|114046351|ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113887793|gb|ABI41844.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 514

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 11/185 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G D  K  +  +++ K EN  +   S         ++     +  IS+    +  ++  K
Sbjct: 74  GYDFQKKREALEALAKTENLDIQFTSISASTNADNQQN----SLLISANNQAMSKEDQEK 129

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
              ++       IS  D+    MF   S+    +    LQK+  +   S + I I GHTD
Sbjct: 130 YSDYQVVGMAATISSTDEM---MFGSGSAEATAQAKQKLQKLAAIYKDSKQNILITGHTD 186

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANR 332
           A         N  LS  RA     +  ++G+  +R+  + +G +       ++   + NR
Sbjct: 187 A---SGSESLNQTLSEARARYVATLFNQAGIPTERLFFQGAGESQPVAANTNETGKAKNR 243

Query: 333 RIDIL 337
           R++I+
Sbjct: 244 RVEIV 248


>gi|325525466|gb|EGD03280.1| flagellar motor protein MotB [Burkholderia sp. TJI49]
          Length = 109

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           NW LS DRA ++ + L+  G+ E ++ ++ G A  +    +DP++  NRRI ++V +R+
Sbjct: 1   NWELSADRANASRRELIAGGMDEAKVMRVIGLASTQNLNKADPLDPENRRISVIVLNRK 59


>gi|114799158|ref|YP_761149.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114739332|gb|ABI77457.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 297

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 9/213 (4%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +   +   Q E      + ++++ + + ++   E +  +         +           
Sbjct: 91  MLAETRGLQREANTQIESLNTQRAEVVSQARMREVASAEAATTVAENRADRSDAVAAGAV 150

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
                ++          A    +   +E T+T + +++I +     F   S++       
Sbjct: 151 ADSAASETARLAAEARAAALTAELADYEQTKTDLGVTLILRDLQ--FASGSALLTSGAQG 208

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L  +   L+   E  I I GHTD+         N  LS  RA S    L  +GV   RI
Sbjct: 209 RLAPLASYLSKQPESRIQIAGHTDSQ---GAEAYNQDLSARRAASVGTYLASTGVDSGRI 265

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           + I G        ++D     + NRR++I + D
Sbjct: 266 NTI-GLGESTPLSSNDTAAGRAINRRVEITILD 297


>gi|268595437|ref|ZP_06129604.1| ompA family protein [Neisseria gonorrhoeae 35/02]
 gi|268597225|ref|ZP_06131392.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599401|ref|ZP_06133568.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae MS11]
 gi|268601994|ref|ZP_06136161.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID18]
 gi|268604326|ref|ZP_06138493.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID1]
 gi|268682782|ref|ZP_06149644.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID332]
 gi|268684809|ref|ZP_06151671.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687209|ref|ZP_06154071.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268548826|gb|EEZ44244.1| ompA family protein [Neisseria gonorrhoeae 35/02]
 gi|268551013|gb|EEZ46032.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583532|gb|EEZ48208.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae MS11]
 gi|268586125|gb|EEZ50801.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID18]
 gi|268588457|gb|EEZ53133.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID1]
 gi|268623066|gb|EEZ55466.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID332]
 gi|268625093|gb|EEZ57493.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627493|gb|EEZ59893.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 216

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             + G   E  R G  I ++    +  F   S+         L    + L    +  ++I
Sbjct: 77  QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 135

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +   + A +N  LS  RA +    L   GV+  R++ + G+  H    ++    
Sbjct: 136 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 191

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 192 GRAQNRRVEILINPDQ 207


>gi|149913687|ref|ZP_01902220.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b]
 gi|149812807|gb|EDM72636.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b]
          Length = 599

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 89/258 (34%), Gaps = 16/258 (6%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           +   +  +            ++    +     + +  +     +   +          + 
Sbjct: 338 ADTALTEAEARAALLAQARDRLADQQELASEAQKQQALLNRQVAALRDQLGQLQALLDDA 397

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
                      +S+  E N  L  ++ E+    + ++    L ++ ++ L    ++   +
Sbjct: 398 KTREAAQDVQLQSLGNELNTALARVAAEERRRREAEEARARLLEEQNADLERYRSEFFGR 457

Query: 214 GVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI----- 266
                  + GI I        +  +F    +         + K+ E+    T+ I     
Sbjct: 458 LRDVLGAQEGIRIEGDRFVFSSEVLFAPGEAELSGAGQREVAKVAEIFRSVTDEIPEGID 517

Query: 267 ---SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
               + GHTD  P R      DNW LS+ RA S  + ++ + G+  +R+S  +GF  ++ 
Sbjct: 518 WVLQVDGHTDDVPVRPGAAFEDNWELSMARALSVVRYMIDTLGLPPERLSA-NGFGQYQP 576

Query: 321 KIASDP--MNSANRRIDI 336
               D     + NRRI++
Sbjct: 577 VNPDDTPEARAQNRRIEL 594


>gi|153213818|ref|ZP_01949026.1| outer membrane protein OmpA [Vibrio cholerae 1587]
 gi|229524210|ref|ZP_04413615.1| outer membrane protein A precursor [Vibrio cholerae bv. albensis
           VL426]
 gi|124115742|gb|EAY34562.1| outer membrane protein OmpA [Vibrio cholerae 1587]
 gi|229337791|gb|EEO02808.1| outer membrane protein A precursor [Vibrio cholerae bv. albensis
           VL426]
          Length = 321

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|229513857|ref|ZP_04403319.1| outer membrane protein A precursor [Vibrio cholerae TMA 21]
 gi|262192122|ref|ZP_06050283.1| outer membrane protein A precursor [Vibrio cholerae CT 5369-93]
 gi|297580859|ref|ZP_06942784.1| outer membrane protein OmpA [Vibrio cholerae RC385]
 gi|229349038|gb|EEO13995.1| outer membrane protein A precursor [Vibrio cholerae TMA 21]
 gi|262031971|gb|EEY50548.1| outer membrane protein A precursor [Vibrio cholerae CT 5369-93]
 gi|297534685|gb|EFH73521.1| outer membrane protein OmpA [Vibrio cholerae RC385]
          Length = 321

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|124009612|ref|ZP_01694285.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC
           23134]
 gi|123984753|gb|EAY24733.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC
           23134]
          Length = 493

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNW 285
            ++++ +  +F    +I  P +  VL ++ E+L   ++  I + GHTD          N 
Sbjct: 380 EVLERASKVLFAPGKAIINPVSFPVLNELSELLKKYASTKIYLEGHTDNQ---GDDDANL 436

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +LS DRA +    L+K G+++ RI   +GF   +    +        NRR+D+ + ++
Sbjct: 437 KLSKDRAQAVADYLIKKGIAKSRIES-TGFGETKPIADNKTAAGRKKNRRVDMKLTNQ 493


>gi|89094432|ref|ZP_01167372.1| chemotaxis protein MotB [Oceanospirillum sp. MED92]
 gi|89081324|gb|EAR60556.1| chemotaxis protein MotB [Oceanospirillum sp. MED92]
          Length = 311

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +   D+ K +   L    + +I +G L       + +SI + R+  +F+   ++P     
Sbjct: 100 QEETDILKALQRELEVAFSQHIREGQL-RVVGNDLWLSI-ELRSNYLFESGGALPNILAD 157

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L++I  +L   +  I + G TD           NW LS  RA +  ++L + GV+ ++
Sbjct: 158 QLLEQIAGMLKDKSNPIHVEGFTDNQQISTDEFPSNWELSAARAAAVVRLLSQFGVNPEQ 217

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           ++ + G+   +   ++        NRR+ I+V   +
Sbjct: 218 MAAV-GYGEFQPAYSNRTAEGQRLNRRVLIVVSRDE 252



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YADF+T+L AFF+VM+ I++ +++  K +          L  A   I     P + 
Sbjct: 16  WVISYADFITLLFAFFVVMYAISSVNEEKYKNLTDALAGVFVGLDQA---IEVNPAPGQG 72

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
            S++   + I      +  ++ I   +Q++ 
Sbjct: 73  KSESGFGIFIGGKHDIDVPEVTISPPDQEET 103


>gi|152990728|ref|YP_001356450.1| hypothetical protein NIS_0983 [Nitratiruptor sp. SB155-2]
 gi|151422589|dbj|BAF70093.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 225

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHT 272
              T   ++I +    N  +F  +S          L++I +VL    +     I I G+ 
Sbjct: 94  LSITTKYVMIRLF---NDIVFKDTSYQLTDRAKQTLKEIAQVLKKLPKNQKFYIKINGYA 150

Query: 273 ---DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-M 327
              DAS       D W LS+ RA +    LMK G+   R   ISG+   R   + ++P +
Sbjct: 151 TIKDASKLPPDIVDAWDLSIKRAEAVAFYLMKQGIDPSRFF-ISGYGDTRPIYSWNNPLL 209

Query: 328 NSANRRIDILVEDRQ 342
           N  N R++I +E  Q
Sbjct: 210 NRRNDRVEIYIEVDQ 224



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 69/178 (38%), Gaps = 8/178 (4%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
               +   ++  W + + D M++L+ FF++++ ++  D         YF     N     
Sbjct: 3   KKKPEECPSIPGWLVSFGDLMSLLLTFFILLYAMSTVDVTKALKFLSYFQG-EPNYKPIR 61

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
             +     P   +   K+   I   +  ++   ++  T +    +   + +F  ++ Q +
Sbjct: 62  ISVVPPIVPFSTNIVKKVKKRIKRILPPHA--YQLSITTKYVMIRLFNDIVFKDTSYQLT 119

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSIN-----KEENYFLPPLSKEKILAMKRKKRLQ 193
           +  K +L   ++  K L K+      IN     K+ +   P +     L++KR + + 
Sbjct: 120 DRAKQTLKEIAQVLKKLPKNQKFYIKINGYATIKDASKLPPDIVDAWDLSIKRAEAVA 177


>gi|163732302|ref|ZP_02139748.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149]
 gi|161394600|gb|EDQ18923.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149]
          Length = 659

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 17/273 (6%)

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
           A+    + +      +Q + +L+  E I++ +         Q    +    ++  + +  
Sbjct: 384 AADTTSEVERRASLLAQARNELAQQEQISERAQRQTELLNQQVAALRTQLGDLQAVLDDA 443

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           +       +   S   +       +     +          + +    + +     L  +
Sbjct: 444 KERDTAQQVQLQSLGSELNTALARVAAEERRRAELEEAERLRLQEEKARLEAEAARLTAE 503

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            +  L    ++   +       + G+ I        +  +F+ + +    E    + K+ 
Sbjct: 504 -TKNLEQYRSEFFGRLRDVLGRQEGVRIEGDRFVFSSEVLFEPARADLSAEGQQEIAKVA 562

Query: 257 EVLA--------HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVS 305
            +L+            +I + GHTD  P   + +  DNW LS  RA S  + +++S G+ 
Sbjct: 563 RILSSIADEIPPEIDWIIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVESLGIP 622

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            +R++  +GF   +     +     + NRRI++
Sbjct: 623 PNRLAA-NGFGEFQPVAVENTPQARAQNRRIEL 654


>gi|330946399|gb|EGH47480.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 213

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
           LS+E++  M  +++   LA    K  S+   G   ++ +  +    T  G+++++ D   
Sbjct: 43  LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDRGLVMTLGD--- 99

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD   +         + K+ + L  +   +  I G+TD++      +DN +LS DRA
Sbjct: 100 -VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRA 155

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            +   VLM  GV E RI  + G+       A+  +   + NRR++I+  D +G
Sbjct: 156 QAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 207


>gi|291532054|emb|CBK97639.1| Flagellar motor protein [Eubacterium siraeum 70/3]
          Length = 339

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 14/193 (7%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215
           +        + +   N   PP ++      ++ + L     ++ S L      N + + V
Sbjct: 62  VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGQYV 121

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272
             E T T I I      NT MFD +S++   E   VL K    +    + I    + GHT
Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCEVSGHT 178

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329
            A    ++  ++W LS  RA S  + +     V  ++ + + G A +     +      +
Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234

Query: 330 ANRRIDILVEDRQ 342
            NRR++I++   Q
Sbjct: 235 TNRRVEIMIVRAQ 247



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                     G+W   YAD +T+L+ FF++++  ++ D+   + I Q F        T+S
Sbjct: 3   KRRAGGGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
               +     E+   N  D + +     N+ +    S   +           +
Sbjct: 55  GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107


>gi|262039107|ref|ZP_06012440.1| inner membrane lipoprotein YiaD [Leptotrichia goodfellowii F0264]
 gi|261746896|gb|EEY34402.1| inner membrane lipoprotein YiaD [Leptotrichia goodfellowii F0264]
          Length = 164

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
            GV  E T  G  I +    N   FD +SS+        L  + +VL    +  I + GH
Sbjct: 39  SGVKVERTGEG-EIKLTAPENIT-FDTNSSVIKSRFTGSLNSVADVLKKYPDSNIIVSGH 96

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD++   +I      LS++RA S    L+ +GV   RI+ + G+       ++      +
Sbjct: 97  TDSTGNDSINNP---LSVNRAASVKSYLVGAGVPSSRITSV-GYGSKEPIASNSTANGRA 152

Query: 330 ANRRIDILVEDR 341
            NRR++I +  +
Sbjct: 153 QNRRVEIKIVAK 164


>gi|304311338|ref|YP_003810936.1| Putative outer membrane protein [gamma proteobacterium HdN1]
 gi|301797071|emb|CBL45284.1| Putative outer membrane protein [gamma proteobacterium HdN1]
          Length = 208

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
           GV    T  GI +++        F  + S  +P    VL+ +  VL       I + GHT
Sbjct: 85  GVSVTRTPEGIKLNM---PGAISFPSNQSGLMPSFYPVLESVALVLKEFNNTAIKVSGHT 141

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D++     A  N RLS  RA S    L   GV+  R+ ++ G+          S+   +A
Sbjct: 142 DST---GGAELNQRLSEQRAESVAAFLSGQGVARARM-QVYGYGPRYPVADNKSEAGKAA 197

Query: 331 NRRIDILVED 340
           NRR++I + +
Sbjct: 198 NRRVEIDILN 207


>gi|254302883|ref|ZP_04970241.1| possible outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323075|gb|EDK88325.1| possible outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 212

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  K++ + L G  A+        +     ++I++        F   S+         L
Sbjct: 74  DNQEKELKAKLQGTQAE-------VKKDGNALVINL---PGGVTFASDSANITSSFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD++        N  LS  RA +  Q L+  GVS  RI  
Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDST---GNDAHNQELSQRRANAVAQYLVAQGVSSSRIVA 180

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++        NRR++I +   Q
Sbjct: 181 -NGFGSSNPIASNSTQEGRLQNRRVEIKILPAQ 212


>gi|221640526|ref|YP_002526788.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161307|gb|ACM02287.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 228

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 +             +     G  L        S NK E   +   +   IL   
Sbjct: 26  SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L   A  + +++           V    T + +++++       +F   S+   P+
Sbjct: 85  VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L  + + L       I++ GHTD++     A  N  LS+ RA S   VL+ +GV  
Sbjct: 135 LQRDLGAVAQNLLRYPNSTIAVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPS 191

Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            R+S I G    +   ++      + NRR+DI++  
Sbjct: 192 YRVSAI-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226


>gi|162449773|ref|YP_001612140.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161160355|emb|CAN91660.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 601

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 11/180 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +     N    P S+    A      + + A            D    G  F     G  
Sbjct: 415 TAETAANAGSQPASRHGCPADTDGDGIPNAADACPYERGKPSEDRATHGCPFAVRIEGSQ 474

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283
           I I+ Q     F    +   PE+  +L ++  VL    E   +++ GHTD       A+ 
Sbjct: 475 IVILQQVQ---FRTGRAEIEPESFELLSEVAAVLEEHPEIARVAVDGHTDNQ---GAAQA 528

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           N  LS  RA +    L   G+   R+    GF   R    +      + NRR++  +  R
Sbjct: 529 NLSLSQRRALAVVAWLTAHGIDARRLEA-RGFGARRPLADNRTRDGRAKNRRVEFQIRKR 587


>gi|17549701|ref|NP_523041.1| hypothetical protein RS03061 [Ralstonia solanacearum GMI1000]
 gi|17431956|emb|CAD18633.1| putative outer membrane transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 215

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLENEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE + +L+ +   L+       E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGLELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A D   + NRR++I
Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDAGRAKNRRVEI 200


>gi|149370425|ref|ZP_01890114.1| putative flagellar motor protein MotB [unidentified eubacterium
           SCB49]
 gi|149355976|gb|EDM44533.1| putative flagellar motor protein MotB [unidentified eubacterium
           SCB49]
          Length = 286

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 91/210 (43%), Gaps = 28/210 (13%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-------AKKISSTLSGLV 207
           + L  S    + ++      +  +   +   +K KK L D+       AK +  +++ ++
Sbjct: 68  QSLSDSNSSLEQLSNSRYQKMGNVVVSENDKIKMKKALADVDPVKLKNAKTLQDSMNLII 127

Query: 208 ADNIVKGVLFET-----------TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + N+ KG+  E              T ++I+I D+    +F+  S     +   +L+K+ 
Sbjct: 128 SHNLKKGLSSEMMTDNDDIDISIDETVVMITISDKM---LFNSGSYRINAKANPLLEKLA 184

Query: 257 EVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
            ++       + + GHTD+   +  A  +DNW LS++R+ +  + L     V+ +++   
Sbjct: 185 ALINSEPALEVMVEGHTDSQTVKPGAIVKDNWDLSVERSTAVIRKLQDQYNVAPEKLIA- 243

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340
           +G + +     +D     S NRR  I++  
Sbjct: 244 AGRSSYHPVTENDTKDGRSKNRRTRIVILP 273


>gi|322418405|ref|YP_004197628.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320124792|gb|ADW12352.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 228

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E  R G  +  +   +  +FD       PE    L K    L  S   I I GHTD++  
Sbjct: 97  EVIRDGDKV-YVALPSGILFDVGKDTLKPEAKDALSKAVPTLRDSQTTIVIEGHTDST-- 153

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N  LS  RA      L+  GV   +++ + G+   R  +A+D     + NRR+ 
Sbjct: 154 -GSNAVNQPLSERRAGRVRDFLISQGVPGSKMAAV-GYGSTRPAVANDTEANRALNRRVQ 211

Query: 336 ILVEDRQ 342
           I +   +
Sbjct: 212 IELSPNE 218


>gi|51894108|ref|YP_076799.1| flagellar motor protein MotB [Symbiobacterium thermophilum IAM
           14863]
 gi|51857797|dbj|BAD41955.1| flagellar motor protein MotB [Symbiobacterium thermophilum IAM
           14863]
          Length = 300

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 100/312 (32%), Gaps = 42/312 (13%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W + YADFMT++   F+VM+     D    +++ +     G+ L T    I       + 
Sbjct: 26  WMVSYADFMTLMFIVFVVMFSFARVDTAKYQSLARSL---GQALGTVGPDIAPLPTRGQE 82

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
            +   I          +  D                 ++      + +E           
Sbjct: 83  GTALPIIWPERPGSLPDVPDWPA--------------HLIAPPEEEPTESAPVPPVEPPP 128

Query: 153 KGKDLCKSTDLEKSINKEENYFLP--PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
              +         ++ + E   +P  P     +        + ++ + +    +GL++  
Sbjct: 129 AEAEPADEPTDVWTVLEPEPAPVPASPRVTAPVAEPDEMAEVAEVFRAMPGVKTGLLS-- 186

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
                       GI++S+     + +F+       PE    L +I + LA     I + G
Sbjct: 187 ------VALEERGIVLSV---AGSLLFEPGEYTIRPEAYPTLNEIADKLAGVELPIMVNG 237

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS 329
             DAS     A   + L+  RA +  +      G+         G+   +   ASD    
Sbjct: 238 TADASHAAGSAE-AFELAALRAGAVVRYFTETYGLPGGNFV-YFGYGDGQ--SASD---- 289

Query: 330 ANRRIDILVEDR 341
              R+ I+V  +
Sbjct: 290 ---RVTIVVARK 298


>gi|326562151|gb|EGE12479.1| OmpA/MotB domain protein [Moraxella catarrhalis 7169]
 gi|326565667|gb|EGE15830.1| OmpA/MotB domain protein [Moraxella catarrhalis 12P80B1]
 gi|326566236|gb|EGE16388.1| OmpA/MotB domain protein [Moraxella catarrhalis 103P14B1]
 gi|326567112|gb|EGE17234.1| OmpA/MotB domain protein [Moraxella catarrhalis BC1]
 gi|326576199|gb|EGE26114.1| OmpA/MotB domain protein [Moraxella catarrhalis CO72]
          Length = 224

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++  AK+I   + G          +   T TG  I++        F           +  
Sbjct: 81  MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132

Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++   +       I I GHTD++     A  N  LS  RA S    L+  GV   RI 
Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + G+   +     A++   + NRR+++++   QG
Sbjct: 190 TV-GYGMRQPIASNATEAGRAQNRRVELMILAPQG 223


>gi|254286478|ref|ZP_04961435.1| outer membrane protein OmpA [Vibrio cholerae AM-19226]
 gi|150423427|gb|EDN15371.1| outer membrane protein OmpA [Vibrio cholerae AM-19226]
          Length = 321

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|261211335|ref|ZP_05925623.1| outer membrane protein A precursor [Vibrio sp. RC341]
 gi|260839290|gb|EEX65916.1| outer membrane protein A precursor [Vibrio sp. RC341]
          Length = 322

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             VA+ +V+ V    T T          ++  F  +S+   P T+  L KI   L    +
Sbjct: 187 APVAEPVVEKVAVTKTFT------FQHLDSSTFATASAELKPATVKKLDKIVGYLNQYPQ 240

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + GHTD++        N +LS  RA +  + L   G+   RIS   G        +
Sbjct: 241 AKVEVVGHTDST---GSDAYNQKLSERRAQAVAKALEAQGIDASRISA-KGLGESSPIAS 296

Query: 324 SDPMNSA--NRRIDILV 338
           +        NRR+++++
Sbjct: 297 NTTAEGREKNRRVELVI 313


>gi|229528782|ref|ZP_04418172.1| outer membrane protein A precursor [Vibrio cholerae 12129(1)]
 gi|229332556|gb|EEN98042.1| outer membrane protein A precursor [Vibrio cholerae 12129(1)]
 gi|327484732|gb|AEA79139.1| Outer membrane protein A precursor [Vibrio cholerae LMA3894-4]
          Length = 321

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|254294114|ref|YP_003060137.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
 gi|254042645|gb|ACT59440.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
          Length = 487

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           +I   N   F+   +    E+   L K+  V      V I + GHTD          N R
Sbjct: 372 LIMDANRIYFETGQATISRESGDTLDKLIAVARRCNNVAIRVEGHTDNV---GGREANVR 428

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA +    L+  G  + R+S I G+   +    ++     + NRRI+ +V   +
Sbjct: 429 LSDKRAQAVADYLIGRGYPDYRLSAI-GYGSDKPAANNETPEGRARNRRIEFIVTSEE 485


>gi|258593360|emb|CBE69699.1| OmpA/MotB precursor [NC10 bacterium 'Dutch sediment']
          Length = 249

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+    E++ +L  + E+L+   +  ++I GHTD+      A  N +LS  RA S 
Sbjct: 147 FAFNSAELTTESLTILDGVAEILSKHPDLKVTIAGHTDSV---GTADYNKKLSQRRAESV 203

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
              L   GV+  +++ + GF   +   ++D     + NRR+++
Sbjct: 204 RNYLASHGVNAAKLTAV-GFGEEQPIASNDEAEGRTKNRRVEL 245


>gi|221069812|ref|ZP_03545917.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220714835|gb|EED70203.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 219

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 16/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + L+   +++ +   G          + +T    + +   D  +   FD   +       
Sbjct: 75  QNLEKQKREMEAATQGTGVG------VTQTADNQLKL---DIPSDISFDTGRADIKSNFA 125

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L +  E L ++    + I GHTD++    I      LSL RA S    L   GV+  R
Sbjct: 126 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLQRAESTRNYLTSRGVNGAR 182

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           I ++ G   H+     A++   + NRR++I V +R
Sbjct: 183 I-QVQGMGSHQPVASNATNEGRARNRRVEIFVGER 216


>gi|296113807|ref|YP_003627745.1| OmpA/MotB domain protein [Moraxella catarrhalis RH4]
 gi|295921501|gb|ADG61852.1| OmpA/MotB domain protein [Moraxella catarrhalis RH4]
          Length = 224

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++  AK+I   + G          +   T TG  I++        F           +  
Sbjct: 81  MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132

Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++   +       I I GHTD++     A  N  LS  RA S    L+  GV   RI 
Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + G+   +     A++   + NRR+++++   QG
Sbjct: 190 TV-GYGIRQPIASNATEAGRAQNRRVELMILAPQG 223


>gi|261342420|ref|ZP_05970278.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315055|gb|EFC53993.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 606

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAY 293
           P+F   SS  +P++   L  +   +  S E +  I GH+D++     A  N  LS +RA 
Sbjct: 489 PLFANGSSTLMPDSEKTLLAVVPAIRRSPEKMFLIVGHSDST---GSAATNLALSAERAQ 545

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
              + L+   G+  ++     G    R    +D     + NRR++I+   RQ
Sbjct: 546 VIKEWLVAHTGLPAEQFI-TEGAGDTRPVANNDTKDGRAQNRRVEIIPLSRQ 596


>gi|78484731|ref|YP_390656.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78363017|gb|ABB40982.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
          Length = 248

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +DL    +  +   ++    K +  E T     I++   R+   F+   +    +T   L
Sbjct: 79  EDLKPVSTEEIQQAMSKVNPKDIDIEDTPDYTKITL---RSDSFFESGRATITDKTREQL 135

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +++GE LA   + ISI G+TD+ P  N+    NW LS  RA +  +  +  GV ++ +  
Sbjct: 136 EQLGETLAGRDQEISITGYTDSIPIENLQFPSNWELSAARAATVARTFIYMGVDKN-LVT 194

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           ISG A +     +      S NRR+ I++ +++
Sbjct: 195 ISGKADNDAVAPNATAYGRSLNRRV-IILVNKK 226



 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++   ++ P   G+W+I  AD MT LM FFLVMW+ +  D D +KA  +     G   
Sbjct: 1   MSRRQRHEECPEEGGAWEIALADLMTTLMVFFLVMWLTSIVDPDKRKAFVEALVGEGAGG 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDL------SIDEHITK-NSVDLKIGSTNQKKQYQRLEN 129
              S    DE N P   S  K DL       I + ++K N  D+ I  T    +     +
Sbjct: 61  ENISA---DETNTPREPSIMKEDLKPVSTEEIQQAMSKVNPKDIDIEDTPDYTKITLRSD 117

Query: 130 NIFYLSNSQQSEHCKNSLTRDSE 152
           + F    +  ++  +  L +  E
Sbjct: 118 SFFESGRATITDKTREQLEQLGE 140


>gi|15642211|ref|NP_231844.1| outer membrane protein OmpA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586239|ref|ZP_01676029.1| outer membrane protein OmpA [Vibrio cholerae 2740-80]
 gi|121726579|ref|ZP_01679828.1| outer membrane protein OmpA [Vibrio cholerae V52]
 gi|147673624|ref|YP_001217730.1| outer membrane protein OmpA [Vibrio cholerae O395]
 gi|153817076|ref|ZP_01969743.1| outer membrane protein OmpA [Vibrio cholerae NCTC 8457]
 gi|153820798|ref|ZP_01973465.1| outer membrane protein OmpA [Vibrio cholerae B33]
 gi|153825329|ref|ZP_01977996.1| outer membrane protein OmpA [Vibrio cholerae MZO-2]
 gi|153829325|ref|ZP_01981992.1| outer membrane protein OmpA [Vibrio cholerae 623-39]
 gi|227082337|ref|YP_002810888.1| outer membrane protein OmpA [Vibrio cholerae M66-2]
 gi|229507710|ref|ZP_04397215.1| outer membrane protein A precursor [Vibrio cholerae BX 330286]
 gi|229512095|ref|ZP_04401574.1| outer membrane protein A precursor [Vibrio cholerae B33]
 gi|229519230|ref|ZP_04408673.1| outer membrane protein A precursor [Vibrio cholerae RC9]
 gi|229607214|ref|YP_002877862.1| outer membrane protein A precursor [Vibrio cholerae MJ-1236]
 gi|254225790|ref|ZP_04919395.1| outer membrane protein OmpA [Vibrio cholerae V51]
 gi|254849343|ref|ZP_05238693.1| outer membrane protein OmpA [Vibrio cholerae MO10]
 gi|255747088|ref|ZP_05421033.1| outer membrane protein A precursor [Vibrio cholera CIRS 101]
 gi|262161368|ref|ZP_06030478.1| outer membrane protein A precursor [Vibrio cholerae INDRE 91/1]
 gi|262167761|ref|ZP_06035463.1| outer membrane protein A precursor [Vibrio cholerae RC27]
 gi|298500409|ref|ZP_07010214.1| outer membrane protein OmpA [Vibrio cholerae MAK 757]
 gi|2641145|gb|AAB86826.1| putative outer membrane porin [Vibrio cholerae O395]
 gi|9656770|gb|AAF95357.1| outer membrane protein OmpA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549505|gb|EAX59531.1| outer membrane protein OmpA [Vibrio cholerae 2740-80]
 gi|121631032|gb|EAX63411.1| outer membrane protein OmpA [Vibrio cholerae V52]
 gi|125621696|gb|EAZ50025.1| outer membrane protein OmpA [Vibrio cholerae V51]
 gi|126512344|gb|EAZ74938.1| outer membrane protein OmpA [Vibrio cholerae NCTC 8457]
 gi|126521590|gb|EAZ78813.1| outer membrane protein OmpA [Vibrio cholerae B33]
 gi|146315507|gb|ABQ20046.1| outer membrane protein OmpA [Vibrio cholerae O395]
 gi|148875166|gb|EDL73301.1| outer membrane protein OmpA [Vibrio cholerae 623-39]
 gi|149741013|gb|EDM55082.1| outer membrane protein OmpA [Vibrio cholerae MZO-2]
 gi|227010225|gb|ACP06437.1| outer membrane protein OmpA [Vibrio cholerae M66-2]
 gi|227014109|gb|ACP10319.1| outer membrane protein OmpA [Vibrio cholerae O395]
 gi|229343919|gb|EEO08894.1| outer membrane protein A precursor [Vibrio cholerae RC9]
 gi|229352060|gb|EEO17001.1| outer membrane protein A precursor [Vibrio cholerae B33]
 gi|229355215|gb|EEO20136.1| outer membrane protein A precursor [Vibrio cholerae BX 330286]
 gi|229369869|gb|ACQ60292.1| outer membrane protein A precursor [Vibrio cholerae MJ-1236]
 gi|254845048|gb|EET23462.1| outer membrane protein OmpA [Vibrio cholerae MO10]
 gi|255735490|gb|EET90890.1| outer membrane protein A precursor [Vibrio cholera CIRS 101]
 gi|262023826|gb|EEY42525.1| outer membrane protein A precursor [Vibrio cholerae RC27]
 gi|262028679|gb|EEY47333.1| outer membrane protein A precursor [Vibrio cholerae INDRE 91/1]
 gi|297541102|gb|EFH77156.1| outer membrane protein OmpA [Vibrio cholerae MAK 757]
          Length = 321

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|326334952|ref|ZP_08201152.1| outer membrane protein OprF [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692757|gb|EGD34696.1| outer membrane protein OprF [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 376

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN----TP 235
           +E I+    ++RL  + K+             +  V     R    I +  + N    T 
Sbjct: 208 EEPIVDHVERERLPKIKKERKRITKARP----ITRVETPEEREARTIRVTKEINLYAKTI 263

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I   +   +L  I +++  + +    I GHTD +        N +LS +RA +
Sbjct: 264 LFDLDKAIVKTQAEFILDNIAKIMQENEDFNFVIEGHTDNT---GTPEHNLQLSQERADA 320

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
               L+  G+++ R+    G+   R   ++D       NRR++I V   +
Sbjct: 321 IRAYLVNKGINKKRLEA-KGYGLSRPLESNDTERGREINRRVEINVIPDE 369


>gi|260909380|ref|ZP_05916088.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636472|gb|EEX54454.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 280

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V     +  + IS+ D     ++   S          L KI ++
Sbjct: 121 LTNNLTRSLSREELKEVDVRVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 177

Query: 259 LAH-STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
           +       + + G+TD  P  R   R+NW LS  RA S  Q L  + GV+  R++   G 
Sbjct: 178 IMDYQDYDVLVEGNTDNVPINRENIRNNWDLSCLRASSVVQYLQTRYGVNPKRLTA-GGR 236

Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341
                   +        NRR  I++  +
Sbjct: 237 GEFNPVATNGTEVGKQRNRRTQIIITPK 264


>gi|299069861|emb|CBJ41142.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia
           solanacearum CMR15]
          Length = 215

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +++++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLENEVEQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE + +L+ +   L+       E++ + G  D        R   DNW LS 
Sbjct: 93  FALNSDQLQPEGLELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   + F   +     A D   + NRR++I
Sbjct: 153 KRALTVTRTLIDAGIPGASVFAAA-FGSEQPVSSNADDAGRAKNRRVEI 200


>gi|104780466|ref|YP_606964.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109453|emb|CAK14154.1| putative outer membrane protein; OmpA family [Pseudomonas
           entomophila L48]
          Length = 262

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  QS       T+D++   +      +E+   K+      
Sbjct: 21  SHDPNANLESARTNFSALQSDPQSSKVAALETKDAQDWLNKADKAYMERENEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEAELKNAAAQRAQAKLDARDAQIKKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + I G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKANLKGSAYPNITKLAQFLQENPERKVIIEGYTDSV---GSANYNQT 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI    G+        +  +   + NRR+++ + +
Sbjct: 194 LSERRANSVRMALVRAGVDPARIVA-QGYGKEYPVADNTSNSGRAQNRRVEVTISN 248


>gi|330903399|gb|EGH33971.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 50

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD 59
          EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W++++   
Sbjct: 2  ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATP 50


>gi|319787272|ref|YP_004146747.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465784|gb|ADV27516.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 226

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G     TR G  I++        F  +S+   P+   VL  + EVL    + V+ + G
Sbjct: 97  LQGTGVSVTRNGDNITLN-MPGNVTFGFNSANLDPQFYPVLSSVAEVLREYDKTVVEVAG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD+         N RLS  RA +  Q L+   ++  R   + G        ++D     
Sbjct: 156 HTDSV---GGDEVNQRLSEQRANAVTQFLVSQNINPQRFITV-GAGKRYPIASNDTEAGR 211

Query: 329 SANRRIDILVED 340
           +ANRR++I +  
Sbjct: 212 AANRRVEITLVP 223


>gi|262198395|ref|YP_003269604.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081742|gb|ACY17711.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 193

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR 282
            I I+ Q     F+   ++ L E+  +L ++  ++  + +   I + GHTD+   +  A 
Sbjct: 76  RIEIMQQVQ---FEFGKAVLLEESKSLLDEVAAIMRDNPQIAKIRVEGHTDS---KGKAN 129

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            N RLS +RA S    L+  GV+ +R+    GF   +   ++D     + NRR++  +  
Sbjct: 130 FNLRLSRERAASVRAYLISQGVAGNRLVA-RGFGMTKPIDSNDTDDGRARNRRVEFNIVS 188

Query: 341 R 341
           R
Sbjct: 189 R 189


>gi|86160165|ref|YP_466950.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776676|gb|ABC83513.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 542

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286
           ID +    FD   +    ++  +L  + +++A +    V++I GHTD++     A  N  
Sbjct: 428 IDIKEKVYFDTGKATIKAQSNALLDDVAKLVAANPQVGVVTIEGHTDST---GSAATNRA 484

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS  RA S    L+  GV   R+    GF   R   ++       ANRR++  +++
Sbjct: 485 LSQKRAESVKDYLVSKGVDASRLEA-KGFGPDRPVESNKTAKGREANRRVEFTIQN 539


>gi|332291754|ref|YP_004430363.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169840|gb|AEE19095.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 471

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 29/266 (10%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+ +    P+       D       +K++     G            + I    ++  +
Sbjct: 230 AGLPEFNGCPDSDGDGIED-------SKDACPTVAGLAEFDGCPDTDGDGIPDPKDACPT 282

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
                +L    +   D  K  D           N   P   K+    + +     D+A  
Sbjct: 283 VAGVAALGGCPDADGDGIKDADDACPNEAGPRSNNGCPFEDKDGDGVLDKDDECPDVAGT 342

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++     V+  ++  +  ET                +FD + +    E+   L K+  V
Sbjct: 343 VANNGCPEVSVEVLNELNLET-------------KKVLFDYNKASIRTESYATLDKVASV 389

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +         I GHTD    R     N  LS  RA S    L   G+   R+    GF  
Sbjct: 390 MMEYPTTRFLIEGHTDD---RGRDAYNLDLSDQRAASVRSYLTGKGIPAARLES-KGFGE 445

Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341
            R   ++        NRR+++ + ++
Sbjct: 446 ARPVASNKTAAGRQENRRVELSILEQ 471


>gi|262274025|ref|ZP_06051837.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
 gi|262221835|gb|EEY73148.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP
           101886]
          Length = 208

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G  I ++   +   F  + S   P     L  +  V+    +  +SI GHTD++
Sbjct: 84  IEVVREGDNIRLV-MPSNITFGTNQSGISPGFYQSLDAVARVMNEYDKTFLSIEGHTDST 142

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                A  N  LS  RA S    L++S V+  R+  ++G+   +   ++D     + NRR
Sbjct: 143 ---GDAAYNMTLSEKRAESVKSYLLRSAVNAKRLY-VTGYGETQPIASNDTSTGRAQNRR 198

Query: 334 IDILVEDRQG 343
           ++I +   Q 
Sbjct: 199 VEIQIVPNQA 208


>gi|303249271|ref|ZP_07335504.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489310|gb|EFL49266.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 264

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIV 212
           +D    +  +    ++   F+ P + +     K  +    L  +++  +  L+    N+ 
Sbjct: 66  QDKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEVALLIKELITSDLNVR 124

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K        +G+++ +    N+ MF   S+   P    VL  + ++L      +++RG  
Sbjct: 125 KNSGVSNDSSGVMMQV---NNSVMFRPGSAELTPTAQKVLDGVAKILRDFKINLTVRGFA 181

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI-ASDPMN-S 329
           D           W LS  RA +A + L   +G+S  R+  + G A  +  +  + P N +
Sbjct: 182 DDDEKGGPYPSKWELSAARAAAATRYLAETTGISTTRLRAV-GLADSQPLVPPTSPANKA 240

Query: 330 ANRRID 335
            NRRI+
Sbjct: 241 RNRRIE 246



 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 7   KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
           KN +  + +II ++       ++ GSWK+ YADF+T LMAFFL++W++ +    TK+ + 
Sbjct: 3   KNSDKGKTVIIYRESEGGHGGHHGGSWKVAYADFVTALMAFFLLLWLVVSLKPKTKQELS 62

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
             F       + + + + + +  P   S + I  S +  +++ 
Sbjct: 63  LVFQ---DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE 102


>gi|261415986|ref|YP_003249669.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372442|gb|ACX75187.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 700

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L  I ++L       + ++GHTD +        N  +S  RA + 
Sbjct: 597 FKTGSAKLTASSNKTLNNIAKLLKKLPAVNLEVQGHTDDT---GSEEKNKTMSEQRAQAV 653

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
            + L+K G+  +R+  + G+   +    +        NRR++++
Sbjct: 654 VKYLVKKGIDSERLRAV-GYGSDKPIADNKTKKGRKLNRRVELV 696


>gi|254490409|ref|ZP_05103596.1| Thrombospondin type 3 repeat family [Methylophaga thiooxidans
           DMS010]
 gi|224464375|gb|EEF80637.1| Thrombospondin type 3 repeat family [Methylophaga thiooxydans
           DMS010]
          Length = 200

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 220 TRTGILISIIDQRNTPM------------FDKSSSIPLPETIVVLQKIGEVLAHSTE--V 265
           T  G+   I+DQ   P+            F    ++   E   +L++   +L  +     
Sbjct: 71  TPEGV---IVDQDGCPLAGENLLSLTGVNFAFDKAVLTEEAKTILEEAVTLLKETDGIVE 127

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + + GHTD+      A  N  LS  RA S    L   G+  + +  + G        ++D
Sbjct: 128 VRVEGHTDS--IGTEAY-NQDLSQRRAQSVVDYLTSRGIDGNNLVPV-GLGESSPVASND 183

Query: 326 --PMNSANRRIDILV 338
                +ANRR+D +V
Sbjct: 184 SKAGRAANRRVDFVV 198


>gi|156072292|gb|ABU45468.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327799|gb|ADL27000.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 700

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L  I ++L       + ++GHTD +        N  +S  RA + 
Sbjct: 597 FKTGSAKLTASSNKTLNNIAKLLKKLPAVNLEVQGHTDDT---GSEEKNKTMSEQRAQAV 653

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
            + L+K G+  +R+  + G+   +    +        NRR++++
Sbjct: 654 VKYLVKKGIDSERLRAV-GYGSDKPIADNKTKKGRKLNRRVELV 696


>gi|84683658|ref|ZP_01011561.1| flagellar motor protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84668401|gb|EAQ14868.1| flagellar motor protein [Rhodobacterales bacterium HTCC2654]
          Length = 617

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 16/238 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           N++    R +         +     + +  +    G  L  +     +  +        L
Sbjct: 381 NEQMAALREQLGNLENVLDEAEAREEEAQVQVEALGSRLNSALAQVAAEQRALAASQAAL 440

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPM 236
           ++E+    + ++   +  +  ++ L    ++   +       R GI I        +  +
Sbjct: 441 AEEERARAELERAEAERLRAEAADLENYRSEFFGRLRQVLGDRDGIRIEGDRFVFSSEVL 500

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRN--IARDNWR 286
           F    +         + ++   L      I         + GHTD+ PFR      DNW 
Sbjct: 501 FPVGGADLSAAGRQQIARVAGTLRDVASEIPPEINWILRVDGHTDSQPFRGNAEYADNWE 560

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
           LS  RA S  + +    G   DR+   +GF   +      SD   +ANRRI++ + ++
Sbjct: 561 LSQARALSVVRYMQDQLGFPPDRLVA-AGFGEWQPIAEGDSDEALAANRRIELKLTEK 617


>gi|50956536|gb|AAT90783.1| conserved hypothetical protein [uncultured proteobacterium QS1]
          Length = 575

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +F   S+   P  T V++  +  + A    +I I GHTD          N  LS  RA 
Sbjct: 445 SLFAPGSAELKPGSTKVLIAALVNIKAQPGWLIVIAGHTD---VTGSPEQNLELSRARAA 501

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
           S    + + G   D    + GF  ++   ++D     +ANRR+DI +    G
Sbjct: 502 SVRDWMQRMGDIPDSCFAVQGFGANQPVASNDTEVGRAANRRVDIRLVPEVG 553


>gi|167838085|ref|ZP_02464944.1| ompA family protein [Burkholderia thailandensis MSMB43]
          Length = 243

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++ + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+  
Sbjct: 92  EVRNEAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 148

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+   +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G
Sbjct: 149 TPQGRAILDQMAAALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKG 205

Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
           ++  +++  +G    +   ++D     + NRRI+
Sbjct: 206 IASQQLT-TTGVGPDQPIASNDSADGRARNRRIE 238


>gi|326564485|gb|EGE14711.1| OmpA/MotB domain protein [Moraxella catarrhalis 46P47B1]
 gi|326568376|gb|EGE18456.1| OmpA/MotB domain protein [Moraxella catarrhalis BC7]
 gi|326572277|gb|EGE22272.1| OmpA/MotB domain protein [Moraxella catarrhalis BC8]
 gi|326574291|gb|EGE24238.1| OmpA/MotB domain protein [Moraxella catarrhalis O35E]
 gi|326574875|gb|EGE24805.1| OmpA/MotB domain protein [Moraxella catarrhalis 101P30B1]
          Length = 224

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++  AK+I   + G          +   T TG  I++        F           +  
Sbjct: 81  MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132

Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++   +       I I GHTD++     A  N  LS  RA S    L+  GV   RI 
Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + G+   +     A++   + NRR+++++   QG
Sbjct: 190 TV-GYGIRQPIASNATEAGRAQNRRVELMILAPQG 223


>gi|167565907|ref|ZP_02358823.1| hypothetical protein BoklE_25339 [Burkholderia oklahomensis EO147]
          Length = 215

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSKLDAEVKQRQMETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEV--ISIRGHTDASPFRNI---ARDNWRLSL 289
           F  +S    P    +L+ +   LA         + + G  D    R       DNW LS 
Sbjct: 93  FALNSDELQPAGRDLLKSLAGPLAAYLKANREILMVSGFADDQQVRAGNHRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  +  +  GV    +   + F   +     + D   + NRR++I
Sbjct: 153 KRALTVTRAFIAEGVPASSVFAAA-FGSEQPVSPNSDDEGRAKNRRVEI 200


>gi|56460671|ref|YP_155952.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Idiomarina loihiensis L2TR]
 gi|56179681|gb|AAV82403.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Idiomarina loihiensis L2TR]
          Length = 208

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             K        +AD+ VK +        + + +    +   F   S+        VL  +
Sbjct: 68  MDKQEEEFREELADSGVKVIR---DGDNLRLQL---PSNITFATGSANISQSFNPVLDDV 121

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL    +  + I GHTD++     A  N +LSL+RA +    L+ +GV   R++   G
Sbjct: 122 ARVLKKYEKTTMLIEGHTDST---GSAEYNQQLSLNRANAVRNNLVGNGVDSRRVT-TEG 177

Query: 315 FAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
           +        +D  +    NRR+++ +V + Q
Sbjct: 178 YGESMPVADNDTESGRQLNRRVELRIVPNTQ 208


>gi|296127617|ref|YP_003634869.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
 gi|296019433|gb|ADG72670.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
          Length = 403

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRG 270
             V  +T   G+++ +       +FD  S    PE    +  I + +  +     I + G
Sbjct: 280 DNVTIDTVPEGLVVRL----GEILFDTDSYTLRPEAKNTIDNIVKAIKETYPDREIIVEG 335

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD +        N  LS  RA S    ++ + +  D++    G A      ++D  +  
Sbjct: 336 HTDNT---GRKEYNQELSEKRAKSVADYILPN-LEHDKL-SYKGLADEEPIASNDTADGR 390

Query: 331 --NRRIDILVEDR 341
             NRR+DI+++ R
Sbjct: 391 QKNRRVDIIIKLR 403


>gi|150377808|ref|YP_001314403.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150032355|gb|ABR64470.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 420

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASP 276
           E+ +  +        +   FD   S   P    +L  I   L +     + I GHTDA  
Sbjct: 64  ESMQQALQTREQYDVHGLSFDTGQSTLQPSAKPLLDDIATALKNFPDWGLRIVGHTDA-- 121

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
               A  N RLSL+RA +    L++ G+   ++   +G   +R   ++  D   + NRR+
Sbjct: 122 -SGSAESNERLSLERADTIKAALVERGIDAGKLLA-AGAGQNRPIASNETDEGRALNRRV 179

Query: 335 DIL 337
           +++
Sbjct: 180 ELM 182


>gi|264680876|ref|YP_003280786.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|299531878|ref|ZP_07045278.1| OmpA/MotB [Comamonas testosteroni S44]
 gi|262211392|gb|ACY35490.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|298720053|gb|EFI61010.1| OmpA/MotB [Comamonas testosteroni S44]
          Length = 219

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 16/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + L+   +++ +   G          + +T    + +   D  +   FD   +       
Sbjct: 75  QNLEKQKREMEAATQGTGVG------VTQTADNQLKL---DIPSDISFDTGRADIKGNFA 125

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L +  E L ++    + I GHTD++    I      LSL RA S    L   GV+  R
Sbjct: 126 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLQRAESTRNYLTSRGVNGAR 182

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           I ++ G   H+     A++   + NRR++I V +R
Sbjct: 183 I-QVQGMGSHQPVASNATNEGRARNRRVEIFVGER 216


>gi|256827978|ref|YP_003156706.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577154|gb|ACU88290.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 223

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++       +   + +       R G L+++   +    F   S + LP     +++I +
Sbjct: 76  RMMDNQEADMRQALSQSEEVAVRREGDLLALT-LKGDVTFAVDSDVVLPGLYTEIERIAQ 134

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           VL    +  I + GHTD++        N  LS  RA+S  ++L++ GV+  RI+ + G+ 
Sbjct: 135 VLVKYPQTTIVVEGHTDST---GSDTYNQALSERRAWSVQRLLVERGVNPSRITAM-GYG 190

Query: 317 HHRLKIASDP--MNSANRRIDILV 338
             R    +D       NRR++I V
Sbjct: 191 ESRPVATNDTPEGRQMNRRVEIRV 214


>gi|108524622|ref|YP_619844.1| hypothetical protein pQKH54_47 [Plasmid QKH54]
 gi|99644193|emb|CAJ43326.1| hypothetical protein [Plasmid QKH54]
          Length = 220

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +KG   E  R G  + ++    +  F    S   P     L ++           + +
Sbjct: 84  ESMKGSGVEVEREGDQLKLV-MPGSITFATGKSEIQPSFQYTLNQLAASFRQFQDSDLIV 142

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327
            GHTD+         N  LS  RA S  Q L  +GV   R+ +  G         +D   
Sbjct: 143 TGHTDSV---GSYEANQVLSARRADSVSQFLRSNGVDPSRL-QTFGAGSSSPIAPNDTTE 198

Query: 328 -NSANRRIDILVEDRQG 343
             + NRR++I +  R G
Sbjct: 199 GRAQNRRVEIKLVPRTG 215


>gi|88798977|ref|ZP_01114558.1| OmpA/MotB [Reinekea sp. MED297]
 gi|88778204|gb|EAR09398.1| OmpA/MotB [Reinekea sp. MED297]
          Length = 300

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 8/237 (3%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
            +D   G   +     +         + QQ    + +     +      +   L++ +  
Sbjct: 65  RLDEMTGQQTELASIIQQLQGELKTLSQQQQSSAETARQAQQQLATARSRIQTLDQELKT 124

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
            +                 ++     A   +   + L A           T      ++I
Sbjct: 125 AQQSLEQARVTIHNQQRALRQTSATQASVSTELSTELAAQLSSYDRDISITTAADGTTLI 184

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN----IARDN 284
           +   T +F  ++     +   VL  + EVL    +  + + GH DA P  +        N
Sbjct: 185 NIPLTLLFANTNLDLANDAETVLTSLSEVLKQHPDRRVQVIGHADARPIVSDLAQTYPTN 244

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           W LS  RA      L+  GVS+ R+   SG A ++     A++   S NRRI++ ++
Sbjct: 245 WELSSARASRVVTFLIDQGVSDHRLLA-SGRAANQPVRDGANEEDWSVNRRIEVQIQ 300


>gi|229522162|ref|ZP_04411579.1| outer membrane protein A precursor [Vibrio cholerae TM 11079-80]
 gi|229341087|gb|EEO06092.1| outer membrane protein A precursor [Vibrio cholerae TM 11079-80]
          Length = 321

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|124004460|ref|ZP_01689305.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123990032|gb|EAY29546.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 350

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD + +   P + V L K+ ++L      VI I GHTD          N+ LS  R
Sbjct: 242 DNVSFDFNKATFRPFSKVELDKLVKLLKQYPAIVILITGHTDNI---GTDTKNFDLSQRR 298

Query: 292 AYSAY-QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           A +    +L K GV  DRI +  G    +      ++   + NRR++  V  +
Sbjct: 299 AQTVANYLLTKGGVDPDRI-RTEGMGETQPVMSNNTNTGRALNRRVEFRVLKK 350


>gi|326404482|ref|YP_004284564.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301]
 gi|325051344|dbj|BAJ81682.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301]
          Length = 456

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +   L G +   I KG V    T    +I I    NT +F   S+      + ++ KIG+
Sbjct: 311 VLDRLRGFLQPEITKGEVAVLGTVNAPVIRI---NNTGLFASGSATVESTALPLISKIGQ 367

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGF 315
            LA     + + G+TD+ P   +   +N  LS DRA +A  VL ++   + RI+    G 
Sbjct: 368 ALAREKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGA 427

Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342
           A      A+    + NRRI+I++   +
Sbjct: 428 ADPIATNATPQGRALNRRIEIVLIRSE 454


>gi|194336698|ref|YP_002018492.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309175|gb|ACF43875.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 229

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D+ V+G   E    GI + I D     +F   S+     +   ++K+  +L    E  + 
Sbjct: 87  DHDVEGARVERVGEGIRV-IFDS--GILFSTGSATITSTSRYNIEKLARILNRYNETSLV 143

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+         N  LS  RA S   +L    VS  R+S I G+   R   +++  
Sbjct: 144 IEGHTDSI---GSDDANQSLSERRADSVANLLEAYRVSGRRLSPI-GYGETRPVSSNETE 199

Query: 328 NSA--NRRIDILV-----EDRQG 343
                NRR+++L+       RQ 
Sbjct: 200 YGRKLNRRVEVLIYANDDLKRQA 222


>gi|317059511|ref|ZP_07923996.1| outer membrane protein [Fusobacterium sp. 3_1_5R]
 gi|313685187|gb|EFS22022.1| outer membrane protein [Fusobacterium sp. 3_1_5R]
          Length = 204

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 75  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 133

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++      + N  LS  RA S    L+  GV+ +R+    GF  +     +   +  
Sbjct: 134 HTDST---GSFQHNMDLSNRRANSVKHYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 189

Query: 331 --NRRIDILVEDR 341
             NRR++I +  +
Sbjct: 190 QMNRRVEIKIAPK 202


>gi|332520949|ref|ZP_08397409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043479|gb|EGI79675.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 442

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 28/262 (10%)

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
           GI +    P+    + ID    E +  N                   +        + + 
Sbjct: 206 GIIEANGCPDADGDSVID---SEDLCPNDFGPTTMRGCPDNDGDGTPDKYDKCPTVKGAI 262

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
           +       D++      +     K    +EN   P     K+L  + K++L +L ++   
Sbjct: 263 NDDGCPRIDTDGDGIDDRFDKCPKQPGVKENQGCP-----KVLTPQEKQQLANLERQ--- 314

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
               L  +  +K  +           I +     +F+   +   PE    L +I +++  
Sbjct: 315 --KNLDRNAKIKQQVTN--------DINNYCKAIVFNYGKTSLSPEGKKALDEIYKIMNL 364

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                  + GHTD          N  LS  RA S    L+  G+S  R++   G+     
Sbjct: 365 QKNMKFHVTGHTDNV---GSKATNLALSEKRAASVKNYLITKGISNSRVTS-QGYGEENP 420

Query: 321 K--IASDPMNSANRRIDILVED 340
               +++     NRRI+I + +
Sbjct: 421 IADNSTNEGRIKNRRIEIYITN 442


>gi|194334296|ref|YP_002016156.1| OmpA/MotB domain-containing protein [Prosthecochloris aestuarii DSM
           271]
 gi|194312114|gb|ACF46509.1| OmpA/MotB domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 229

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                DN V G   E    GI + + D     +F  +SS     +   +QK+  +L    
Sbjct: 82  QAEEIDNSVDGATVERVGEGIRV-VFDS--GLLFSTASSTLTSTSRYNIQKLASILNKYE 138

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + I GHTD+         N +LS +RA S   +L   GV   RIS + G+   R   
Sbjct: 139 DTNVVIEGHTDSV---GTESSNQQLSENRAESVASLLRAYGVYGSRISTV-GYGETRPVA 194

Query: 323 ASDPMNSA--NRRIDILV 338
           +++       NRR+++L+
Sbjct: 195 SNETAQGKKLNRRVEVLI 212


>gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
 gi|161323983|gb|EDP95316.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
          Length = 347

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIV 250
            +   + S   G+V     +  + + T   I+  I       +   FD   S    ++  
Sbjct: 200 QVYSDVVSAQIGIVESKEFEQTIEKITAEDIINEINSNGFISLHINFDTGKSRIKADSYE 259

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           ++ +I ++L  +    ISI GHTD          N +LS +RA S    L+  G+ E R+
Sbjct: 260 IISEITKMLKTNPNLKISIEGHTDN---AGDESYNMKLSKNRAKSVLMALVDEGIDESRL 316

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDI 336
               GF   +      +D   + NRR+++
Sbjct: 317 KS-DGFGQTKPIGDNTTDKGKAKNRRVEL 344


>gi|94314001|ref|YP_587210.1| hypothetical protein Rmet_5082 [Cupriavidus metallidurans CH34]
 gi|93357853|gb|ABF11941.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 217

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +     L  + K+R ++L ++   TL   +A  +  G     T     I I       +
Sbjct: 41  QMELSARLENEVKQRQEELKRR--QTLEEALAGPLAAG---RVTLKDGRIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    PE   +L+ +   L+       E++ + G TD    R   R   DN  LS 
Sbjct: 93  FALNSDQLQPEGRALLKSLAAPLSAYLGARDEILMVSGFTDDQQVREGNRRFADNLELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            RA +  + L+++G+    I   + F   +     A++   + NRR++I
Sbjct: 153 QRALTVTRALIEAGLPPASIFSAA-FGSQQPVASNATEESRAKNRRVEI 200


>gi|315917803|ref|ZP_07914043.1| outer membrane protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691678|gb|EFS28513.1| outer membrane protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 204

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 75  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 133

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD +      + N  LS  RA S  Q L+  GV+ +R+    GF  +     +   +  
Sbjct: 134 HTDNT---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 189

Query: 331 --NRRIDILVEDR 341
             NRR++I +  +
Sbjct: 190 QMNRRVEIKIAPK 202


>gi|237748606|ref|ZP_04579086.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13]
 gi|229379968|gb|EEO30059.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13]
          Length = 217

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++   +++ +   G   +      + +T    I +SI    +   F   SS   P+   +
Sbjct: 77  MEKQKQEMQAATQGTGVE------VVQTENNMIRVSI---PSDVSFATGSSTLSPQFKTI 127

Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ +   L ++    I + G+TD +        N  LS  RA S  + L+  GV+ +R +
Sbjct: 128 LRDLATTLKNNPSSSIFVVGYTDNT---GSDSVNLPLSRKRAMSVMEYLVSQGVAANRFT 184

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            + G        ++      + NRR++I V  ++
Sbjct: 185 -VEGMGSKDPIASNATAEGRAQNRRVEIYVGQKK 217


>gi|288929697|ref|ZP_06423541.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329202|gb|EFC67789.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 295

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +++ L+  ++   +K V     +  + IS+ D     ++   S          L KI ++
Sbjct: 136 LTNNLTRSLSREELKEVDVRVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 192

Query: 259 LAH-STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
           +       + + G+TD  P  R   R+NW LS  RA S  Q L  + GV+  R++   G 
Sbjct: 193 IMDYQDYDVLVEGNTDNVPITRENIRNNWDLSCLRASSVVQYLQTRYGVNPKRLTA-GGR 251

Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341
                   +        NRR  I++  +
Sbjct: 252 GEFNPVATNGTEVGKQRNRRTQIIITPK 279


>gi|262195177|ref|YP_003266386.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262078524|gb|ACY14493.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 490

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 23/265 (8%)

Query: 78  TASKGIFDEQ----NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           T   GIFDE     N PE    N  D    E     +     G T+   Q      ++  
Sbjct: 210 TDGDGIFDESDQCPNEPEDMDGNADDDGCPEEEPP-ADTDGDGMTDDVDQCPNEAEDVDG 268

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            S+        N      +       S +       E+         + I+    +   +
Sbjct: 269 FSDEDGCPDLDNDGDGIPDASDQCSDSAEDPDGFADEDGCPDEDNDGDGIVDAADQCMNE 328

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                      G   +   +   +  +  GI            F  +S   LP +  VL 
Sbjct: 329 PETANGYQDGDGCPDEIPEEVKNYTGSIEGIR-----------FANNSDRILPVSRKVLD 377

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           +   +L    +  + I GH+D    R     N  LS  RA +    L+  GV + R+  +
Sbjct: 378 EAARILVEYPDLRVEISGHSDD---RGKRDFNIDLSKRRAEAVRVYLVGKGVEDSRLVSM 434

Query: 313 SGFAHHRLKIAS--DPMNSANRRID 335
            GF   R  + +  +   + NRR++
Sbjct: 435 -GFGPDRPLVENTSNANRAKNRRVE 458


>gi|257466649|ref|ZP_05630960.1| Outer membrane protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 217

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 88  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD +      + N  LS  RA S  Q L+  GV+ +R+    GF  +     +   +  
Sbjct: 147 HTDNT---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 202

Query: 331 --NRRIDILVEDR 341
             NRR++I +  +
Sbjct: 203 QMNRRVEIKIAPK 215


>gi|148261080|ref|YP_001235207.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146402761|gb|ABQ31288.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 456

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +   L G +   I KG V    T    +I I    NT +F   S+      + ++ KIG+
Sbjct: 311 VLDRLRGFLQPEITKGEVAVLGTVNAPVIRI---NNTGLFASGSATVESTALPLISKIGQ 367

Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGF 315
            LA     + + G+TD+ P   +   +N  LS DRA +A  VL ++   + RI+    G 
Sbjct: 368 ALAREKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGA 427

Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342
           A      A+    + NRRI+I++   +
Sbjct: 428 ADPIATNATPQGRALNRRIEIVLIRSE 454


>gi|257452971|ref|ZP_05618270.1| Outer membrane protein [Fusobacterium sp. 3_1_5R]
          Length = 217

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 88  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++      + N  LS  RA S    L+  GV+ +R+    GF  +     +   +  
Sbjct: 147 HTDST---GSFQHNMDLSNRRANSVKHYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 202

Query: 331 --NRRIDILVEDR 341
             NRR++I +  +
Sbjct: 203 QMNRRVEIKIAPK 215


>gi|261821727|ref|YP_003259833.1| hypothetical protein Pecwa_2465 [Pectobacterium wasabiae WPP163]
 gi|261605740|gb|ACX88226.1| type IV / VI secretion system protein, DotU family [Pectobacterium
           wasabiae WPP163]
          Length = 413

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +S+       VV++++ E + +    + + G++D  P R+     N+
Sbjct: 282 SVVTLKGDGLFASASTDVRGRYDVVIKRVAEAMNNVRGKVLVIGYSDNVPIRSARFASNY 341

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            LSL RA S   +L +      R++  +G   +   + +      + NRR++I + 
Sbjct: 342 ELSLARAQSVQTLLQQQLTQPSRVTA-AGRGENHPLVPNTNAENRARNRRVEITLL 396


>gi|183179549|ref|ZP_02957760.1| outer membrane protein OmpA [Vibrio cholerae MZO-3]
 gi|183012960|gb|EDT88260.1| outer membrane protein OmpA [Vibrio cholerae MZO-3]
          Length = 321

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P T+  L KI   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RIS   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312


>gi|302339235|ref|YP_003804441.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636420|gb|ADK81847.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 340

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S+   PE+   L +I  +L      + I GHT     R        LSL RA S  
Sbjct: 240 FKPDSAELTPESGEELSRIASILKKKRIEVEIAGHTADVGDRASQYT---LSLQRAESVK 296

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           + L+  GV E R+  + G+   R   ++D     + NRR++ LV
Sbjct: 297 RTLVSLGVKERRL-SVKGYGGSRPIASNDSQEGRAQNRRVEFLV 339


>gi|53723969|ref|YP_104341.1| OmpA domain-containing protein [Burkholderia mallei ATCC 23344]
 gi|67640679|ref|ZP_00439477.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|121600594|ref|YP_991404.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124386056|ref|YP_001027695.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126450255|ref|YP_001082667.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|167001412|ref|ZP_02267211.1| ompA family protein [Burkholderia mallei PRL-20]
 gi|167908671|ref|ZP_02495876.1| ompA family protein [Burkholderia pseudomallei NCTC 13177]
 gi|217424718|ref|ZP_03456215.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|237814018|ref|YP_002898469.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|254174698|ref|ZP_04881359.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|254201416|ref|ZP_04907780.1| ompA family protein [Burkholderia mallei FMH]
 gi|254206758|ref|ZP_04913109.1| ompA family protein [Burkholderia mallei JHU]
 gi|254357247|ref|ZP_04973521.1| ompA family protein [Burkholderia mallei 2002721280]
 gi|52427392|gb|AAU47985.1| OmpA domain protein [Burkholderia mallei ATCC 23344]
 gi|121229404|gb|ABM51922.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124294076|gb|ABN03345.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126243125|gb|ABO06218.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|147747310|gb|EDK54386.1| ompA family protein [Burkholderia mallei FMH]
 gi|147752300|gb|EDK59366.1| ompA family protein [Burkholderia mallei JHU]
 gi|148026311|gb|EDK84396.1| ompA family protein [Burkholderia mallei 2002721280]
 gi|160695743|gb|EDP85713.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|217392174|gb|EEC32199.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|237502962|gb|ACQ95280.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|238521446|gb|EEP84897.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|243062825|gb|EES45011.1| ompA family protein [Burkholderia mallei PRL-20]
          Length = 310

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 220 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305


>gi|254494341|ref|ZP_05107512.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|226513381|gb|EEH62726.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
          Length = 216

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +     E  R G  I ++    +  F   S+         L    + L    +  ++I
Sbjct: 77  QNLADTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 135

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +   + A +N  LS  RA +    L   GV+  R++ + G+  H    ++    
Sbjct: 136 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 191

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 192 GRAQNRRVEILINPDQ 207


>gi|107024166|ref|YP_622493.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|105894355|gb|ABF77520.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
          Length = 247

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++TL+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 100 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQG 156

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            ++L ++   LA      + I GHTD          N  LS  RA +    L+   +   
Sbjct: 157 KLILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 213

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 214 QMT-TTGVGPDQPIAPNDMADGRARNRRIE 242


>gi|209809374|ref|YP_002264912.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
 gi|208010936|emb|CAQ81341.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
          Length = 212

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 76/199 (38%), Gaps = 13/199 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
            N+L   + K K+       E    + +   +  +  +++ +       +     +    
Sbjct: 20  SNNLLDTAPKTKEDAPYPTFEDPYVESQEKVIDVVDSKEVTSALTGPNGELKDDDMRKVA 79

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             L    IV     E +   ++I+I ++ +   F  + +   P    +L ++  ++A   
Sbjct: 80  EQLTQMGIVYH---EMSDDQLVITIQEKVH---FASAQATLTPLATSLLNQLISIMATKP 133

Query: 264 EVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           E+  +  GHTD       A +N  LS  R+    + L+ + ++  ++    GF  +    
Sbjct: 134 ELALVLDGHTD---ISGNAINNQNLSEKRSNEVRRYLLDNNLNASQLYS-RGFGEYLPLC 189

Query: 323 ASDPMNSA--NRRIDILVE 339
            ++       NRR++I V 
Sbjct: 190 DNETTLGRKCNRRVEITVL 208


>gi|149925042|ref|ZP_01913359.1| outer membrane protein, OmpA/MotB family [Plesiocystis pacifica
           SIR-1]
 gi|149814084|gb|EDM73711.1| outer membrane protein, OmpA/MotB family [Plesiocystis pacifica
           SIR-1]
          Length = 233

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTD 273
             E T + I+I         +F+   +    E+  ++ +I +V   +     +S+ GHTD
Sbjct: 58  RVEVTASAIVI-----NEKILFEVDKAEIRSESFSLMDEITKVFIDNPRIKKVSVEGHTD 112

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--AN 331
           +      +R N +LS  RA S    L++ GV+++R+  + G    +    +D       N
Sbjct: 113 SD---GSSRYNKKLSQKRADSVMAYLVEHGVAQERLEAV-GHGEEKPIADNDTDEGKEKN 168

Query: 332 RRIDILVEDR 341
           RR++ ++ ++
Sbjct: 169 RRVEFIILEQ 178


>gi|108759341|ref|YP_630319.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108463221|gb|ABF88406.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 639

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282
            I I   +   +F+  S++   ++  +L ++  VL  +     + I GHTD    R    
Sbjct: 492 RIRI---KGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDN---RGSRA 545

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            N  LS  RA S  + L+  G++  R+S   GF        +D     + NRR+D
Sbjct: 546 LNMGLSDRRAKSVLEYLVAKGIARKRLSS-KGFGFDNPIATNDTALGRAKNRRVD 599


>gi|313205418|ref|YP_004044075.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312444734|gb|ADQ81090.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 598

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 94/275 (34%), Gaps = 21/275 (7%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           + SK I     PP   + + +  + ++ I     D    + +       ++++       
Sbjct: 322 SVSKSIDTSALPPNSIAVSSVIKTPEQQIAIPENDFNKNNQSLSTISPNIKSDTVSNKLQ 381

Query: 138 QQSEHCKNS------LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
             S+    +      ++  S       +      S+NK  +     +S   + +  +  +
Sbjct: 382 SGSKSIVENYNSPKVISNTSTASSGQSEKVSTVDSVNKTASRLPVDISIANVSSSTQGNK 441

Query: 192 LQDLAKKISSTLSGLVAD--------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           + + +  + S   G   +         +            I++  I       FD     
Sbjct: 442 VVENSVNVDSDGDGTPDNLDMCPNLAGVASNRGCPEISRRIILLFIKALTGIKFDSGKDK 501

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
               +  +L +I + L  +    I + GHTD+   +  +R N  LS  RA +    L++ 
Sbjct: 502 LKKRSYTILNEIAKELIKNPAYFIEVHGHTDS---KGNSRANKLLSELRASAVRNYLIRR 558

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           GV  +RI  + G+        +      + NRR++
Sbjct: 559 GVDGNRIKSV-GYGDKMPVATNKTVKGRTLNRRVE 592


>gi|17547099|ref|NP_520501.1| hypothetical protein RSc2380 [Ralstonia solanacearum GMI1000]
 gi|17429400|emb|CAD16087.1| probable bacterial outer membrane transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 209

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + E L+  
Sbjct: 73  SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLSQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   ++ GHTD++        N  LS  RA S    L   GV+ +R+S   G    +  
Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVASYLTDRGVARNRMSA-EGRGQTQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   + NRR++I ++  QG
Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209


>gi|254447387|ref|ZP_05060853.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
 gi|198262730|gb|EDY87009.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
          Length = 204

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            +  +  + L+   ++    L   +AD +  G     T     I I       +F  +S+
Sbjct: 38  AIQFELTQDLEAEKQR-RQALERALADPLASG---RITFQDGRIGIS---GNLLFRINSA 90

Query: 243 IPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAY 296
                   VLQ + E L        E++ + G TD       N+ RDNW LS  RA +  
Sbjct: 91  DLQSGGNQVLQDLAEPLKVYLSQHDELLMVSGFTDDLSLHEDNLYRDNWGLSAQRALTVT 150

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           + L++ G+ +DR+   + F  +   + +      + NRR++I    R+
Sbjct: 151 RTLVEQGLPQDRLFAAA-FGANAPTVPNRDAASRAKNRRVEISTVPRR 197


>gi|167572993|ref|ZP_02365867.1| hypothetical protein BoklC_24368 [Burkholderia oklahomensis C6786]
          Length = 215

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      +K+++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSRLDAEVKQRQMETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEV--ISIRGHTDASPFRNI---ARDNWRLSL 289
           F  +S    P    +L+ +   LA         + + G  D    R       DNW LS 
Sbjct: 93  FALNSDELQPAGRDLLKSLAGPLAAYLKANREILMVSGFADDQQVRAGNHRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  +  +  GV    +   + F   +     + D   + NRR++I
Sbjct: 153 KRALTVTRAFIAEGVPASSVFAAA-FGSEQPVSPNSDDEGRAKNRRVEI 200


>gi|83717671|ref|YP_439345.1| hypothetical protein BTH_II1148 [Burkholderia thailandensis E264]
 gi|167577759|ref|ZP_02370633.1| hypothetical protein BthaT_06461 [Burkholderia thailandensis TXDOH]
 gi|167615886|ref|ZP_02384521.1| hypothetical protein BthaB_06301 [Burkholderia thailandensis Bt4]
 gi|257142466|ref|ZP_05590728.1| hypothetical protein BthaA_25103 [Burkholderia thailandensis E264]
 gi|83651496|gb|ABC35560.1| ompA family protein [Burkholderia thailandensis E264]
          Length = 215

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS +    +++++      K +   L+G +A           T     I I     + +
Sbjct: 43  ELSSKLDAEVRQRQWESQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P    +L+ +   LA     + E++ + G  D    R   R   DNW LS 
Sbjct: 93  FALNSDELQPAGRDLLKSLAGPLAAYLDANHEILMVSGFADDLQVRAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336
            RA +  +  +  GV    +   + F   +     + D   + NRR++I
Sbjct: 153 KRALTVTRAFIDEGVPASSVFAAA-FGSEQPVSPNSDDAGRAKNRRVEI 200


>gi|238798865|ref|ZP_04642332.1| hypothetical protein ymoll0001_31770 [Yersinia mollaretii ATCC
           43969]
 gi|238717266|gb|EEQ09115.1| hypothetical protein ymoll0001_31770 [Yersinia mollaretii ATCC
           43969]
          Length = 575

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S+  P  T V++  +  + A    +I + GHTD        + N  LSL RA 
Sbjct: 443 SLFDVGQSMLKPGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQTLSLKRAE 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R   ++D     + NRR++I +  +
Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 549


>gi|183222506|ref|YP_001840502.1| hypothetical protein LEPBI_I3161 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912543|ref|YP_001964098.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777219|gb|ABZ95520.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780928|gb|ABZ99226.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 475

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           V   TT  GI+ S+    ++ +FD + S    +    + KI E+L    +  I + GHTD
Sbjct: 353 VKVRTTEDGIVFSL----DSILFDFNDSKLKVDAESAVAKIAEILKKYPDREIRVSGHTD 408

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
                     N +LS +RA S    L+ +   +++     G+A       +D   +   N
Sbjct: 409 NI---GKKEYNQKLSEERAKSVLHSLVDNHKMDEKHISFRGYADEFPVAPNDSEENRHKN 465

Query: 332 RRIDILV 338
           RR++I +
Sbjct: 466 RRVEITL 472


>gi|134283190|ref|ZP_01769891.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|134245385|gb|EBA45478.1| ompA family protein [Burkholderia pseudomallei 305]
          Length = 312

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 165 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 221

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 222 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 278

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 279 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 307


>gi|42524036|ref|NP_969416.1| outer membrane protein [Bdellovibrio bacteriovorus HD100]
 gi|39576244|emb|CAE80409.1| probable outer membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 440

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 111/292 (38%), Gaps = 20/292 (6%)

Query: 53  IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
           I++   D   K++ + +    K+ +  +K    +++ P+      +     E + K    
Sbjct: 164 IVSRYRDLELKSVTKAYLGTAKDNLDTAKKAGADKSAPKSFGMAAMKYENAEKLIKADPR 223

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
                    +   R   ++  ++    +      L   +E+ +    +   E S  ++E 
Sbjct: 224 NAPVIARASQDATRESQHLMEVTRKVNA-GNSEELVLMAERQQRTISNLRSEYSSTEQEL 282

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             +   ++ + + +++++ L + A+ + S L    A+   +         G+        
Sbjct: 283 QTVQSEAERQRMELEKQQTLLNRAQALRSQLKPNEAEVFTENGKLMVRLKGLQ------- 335

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F  + S   P+   +L+K+   LA    + + I GHTD       A  N  LS  R
Sbjct: 336 ----FPTAQSNLGPKNQALLKKVEGALAGVTPKKVIIEGHTDNV---GSAEANRILSEKR 388

Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A S    L+  G +  +++  + G  +      ++     + NRRID+++E 
Sbjct: 389 AQSVENFLVSQGTLPAEKVESV-GMGYDNPVGNNNTAAGRAQNRRIDLVIET 439


>gi|218886501|ref|YP_002435822.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757455|gb|ACL08354.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 194

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+ P P +   L +  + +   +   +S+ GH+D+         N +LS+ RA + 
Sbjct: 93  FPTGSTEPEPTSRPALDEAADNIKCRAVSNVSVIGHSDS---AGDPAANQKLSMARAEAV 149

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            ++L   GV    +  +SG   +   + + P    + NRR++ILV
Sbjct: 150 RRMLEARGVPAGAM-ALSGHGANDPLVPTAPGVAEARNRRVEILV 193


>gi|78484704|ref|YP_390629.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78362990|gb|ABB40955.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 241

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 31/156 (19%)

Query: 215 VLFETT-RTGILISIIDQRNTP--MFDKSSSIPLPETIVVLQKIGEVLAHS--------- 262
           +  E T   GI I++ ++  +   +F    +   P  +  + +    L            
Sbjct: 80  LHIENTLSKGIKITMQEEVFSSQDLFASGRAKINPRYLPYINRFVGFLNQLKLETFQQRH 139

Query: 263 --------------TEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVS 305
                            + I GHTDA+P     + + N+ LS  RAY+   VL + SG+ 
Sbjct: 140 PLQVKSITRPGESFQVTVRIEGHTDATPLAKTALYQSNFELSTFRAYAIMNVLQIYSGLP 199

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           E  +  I+G+      +  +P +S NRR++I +  +
Sbjct: 200 ES-LFSIAGYGSFHP-VTRNPYDSKNRRVEIYLIPQ 233


>gi|330815362|ref|YP_004359067.1| OmpA/MotB [Burkholderia gladioli BSR3]
 gi|327367755|gb|AEA59111.1| OmpA/MotB [Burkholderia gladioli BSR3]
          Length = 345

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 16/264 (6%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +    N    +   +   +                       +  +         +  + 
Sbjct: 82  VLTGTNVANGAGSGQATGAGTGATVSAPAPANATPGQVVAGGKVPDEATKAAVLQKLRDT 141

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI------LAMKRKKRLQDLA 196
                  D  +  D+    +   ++ K     L  +SK ++      + ++ + R + L 
Sbjct: 142 YGAGNVVDQIEVGDVTTPPNWSANVQKLIGPQLKQISKGQLKIDGTSIDVRGEVRNEALR 201

Query: 197 KKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           ++++S ++  +     I   +    +  GIL   +  R    F+  S+   P+   +L +
Sbjct: 202 QQVASDMANQLNPTYTIRNALRVSASEQGILDQTLANRTIE-FETGSATLTPQGRAILDQ 260

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           + + ++      ++I GHTD          N  LS  RA +    L+  G++  +++  +
Sbjct: 261 MADAMSKLANRQVTIIGHTDN---SGNRATNISLSQARADAVKGYLVAKGIASQQLT-TT 316

Query: 314 GFAHHRLKIASDP--MNSANRRID 335
           G    +   ++D     + NRRI+
Sbjct: 317 GVGPDQPIASNDTADGRARNRRIE 340


>gi|84685261|ref|ZP_01013160.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666993|gb|EAQ13464.1| OmpA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248
            +L   A  + S+LS      I  G   +     GI           +F   S+   P  
Sbjct: 84  NQLDKQAGDLRSSLSNSSIQVINTGSYLKVVMPQGI-----------LFPTDSADVSPAL 132

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              L+ + E L       + + GHTD +     A  N  LS  RA +   V+  +GV   
Sbjct: 133 YPDLRALAENLREYPNSSVQVVGHTDNT---GQASYNLTLSQRRAQAVLGVIQSNGVGAA 189

Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           R+  + G         +      + NRR+++L+  R
Sbjct: 190 RLQAV-GKGDSEPVATNLTPEGRAQNRRVEVLIIPR 224


>gi|215433387|gb|ACJ66659.1| OmpA domain protein [Myxococcus fulvus HW-1]
          Length = 620

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 18/233 (7%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           ++           +   +  + +      +              +       + +     
Sbjct: 385 QDEDGCPDDPNAHQPSAEERQPSAPPAPLTLPPPPVDTDGDGLVDSEDLCPNAAEDTDGF 444

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILI 226
             E+    P   ++ I   + +  L+      + T++G+  D+             G  I
Sbjct: 445 EDEDGCPDPDNDQDGIPDAEDQCPLE------AETINGVKDDDGCPDKGKARVRVEGARI 498

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDN 284
            I+D      F     + L  +  +L+++   L  +   E + + GHTD          N
Sbjct: 499 VILD---KVYFATGRDVILARSHSLLRQVASTLKANPRIERVRVEGHTDDQ---GAEAKN 552

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
             LS  RA +    L+K G++ +R+  + G+   +    +        NRR++
Sbjct: 553 LDLSQRRAKNVVDFLVKVGIAAERLEAV-GYGEAKPVDTNKTAKGRENNRRVE 604


>gi|330993347|ref|ZP_08317282.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
 gi|329759377|gb|EGG75886.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
          Length = 407

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +        ++ +  +   H  T  I + G+TD   A P     + N  LSL R
Sbjct: 299 FFDWDGAALTGRAREIVAEAAQASTHVQTTRIEVNGYTDNSAAQPGPRGQQYNLGLSLRR 358

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV    I  + G+   R  + +  D     NRR++I++
Sbjct: 359 ADSVKAELIRDGVPASAIG-VQGYGEARPLVPTGPDTREPQNRRVEIIL 406


>gi|86750700|ref|YP_487196.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86573728|gb|ABD08285.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 451

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + S+     ++ VL+++ EV+AH     I + GHTDA         N  LS  RA + 
Sbjct: 350 FMRGSAEIAQASLPVLKQLAEVIAHCPAATIEVAGHTDA---AGKKAANEALSKRRAEAV 406

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
              L K+G+   +++ + G+   +   A+D     + NRRI+ +V+
Sbjct: 407 ADNLTKAGIGSAKLTAV-GYGASKPLAANDSADGRAKNRRIEFVVK 451


>gi|296329053|ref|ZP_06871559.1| proteobacterial sortase system OmpA family protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296153857|gb|EFG94669.1| proteobacterial sortase system OmpA family protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 208

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  +++ + L G  A               ++I++        F   S+         L
Sbjct: 70  DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANITSGFYSAL 119

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD +        N  LS  RA +  Q L+  GVS +RI  
Sbjct: 120 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSNRIVA 176

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++        NRR++I +   Q
Sbjct: 177 -NGFGSSNPIASNSTPEGRLQNRRVEIKILPAQ 208


>gi|260460699|ref|ZP_05808949.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259033276|gb|EEW34537.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 216

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270
           ++G     TR+G  I I++  +   F+       P    VL  +  VL       + + G
Sbjct: 88  LEGTGVSVTRSGDQI-ILNMPSDITFNSDQDAVKPGFYQVLNSVALVLKKFKQTTVDVFG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++      + N+ LS  RA +    L   GV + R   ++GF   R   ++      
Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLAGQGVDQRRF-AVTGFGKTRPVASNATSEGR 202

Query: 329 SANRRIDI 336
           + NRR++I
Sbjct: 203 AQNRRVEI 210


>gi|304309686|ref|YP_003809284.1| outer membrane porin f precursor [gamma proteobacterium HdN1]
 gi|301795419|emb|CBL43617.1| outer membrane porin f precursor [gamma proteobacterium HdN1]
          Length = 353

 Score = 86.1 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     +QKI + +    +  ++I GHTD +     A  N RLS  RA S 
Sbjct: 244 FATGSSAVAPRYHAEVQKIADFMKKYPDLTVTIEGHTDNT---GGAALNERLSSARANSV 300

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            + L+   GV+ +R++ + G+   R   ++        NRR+ + V +++
Sbjct: 301 REELVNRFGVAANRVTSV-GYGPSRPVASNATAAGRQENRRV-VAVLEKE 348


>gi|319794434|ref|YP_004156074.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315596897|gb|ADU37963.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 331

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD    +  PE+   L ++ + +  +    +S+ GHTDA      A+ N  LS  RA +
Sbjct: 229 LFDLDKDVIRPESQPTLDEMTKLMRNNPPLKLSVVGHTDAQ---GEAKHNDDLSKRRAVA 285

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337
              VL+K+GV   R  ++ +G A       ++   + NRR++++
Sbjct: 286 VIGVLVKAGVDPRRFTTRGAGAAEPVAPNDNEAGRAKNRRVELV 329


>gi|257462480|ref|ZP_05626892.1| Outer membrane protein [Fusobacterium sp. D12]
          Length = 217

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 88  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++      + N  LS  RA S  Q L+  GV+ +R++   GF  +     +      
Sbjct: 147 HTDST---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLTS-QGFGPNNPVADNSTPEGR 202

Query: 329 SANRRIDILVEDR 341
             NRR++I +  +
Sbjct: 203 QMNRRVEIKIAPK 215


>gi|325983492|ref|YP_004295894.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325533011|gb|ADZ27732.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 227

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+++  +++ +  +G          + +T    + ++I    +   FD   +   P   
Sbjct: 73  QRMEEQKREMETATAGTGVQ------VTQTEDNRLKLNI---PSDISFDTGRADIKPGFR 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L      L  +    + I GHTD++    I      LS++RA S    L+  GVS  R
Sbjct: 124 PILDNFATTLISNEGTAVKIIGHTDSTGSDAINNP---LSVNRAASTRDYLVSRGVSIKR 180

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           I +I G         +D     + NRR++I V + Q
Sbjct: 181 I-QIDGRGSREPMAENDTPENRAENRRVEIFVTETQ 215


>gi|124004728|ref|ZP_01689572.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123989851|gb|EAY29380.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 513

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     ++  +L  + + +    E  I + GHT           N RLS  RA + 
Sbjct: 403 FKLGSDELDEKSKALLDSVAQKMMEFPEAEIEVSGHTCNI---GTKAGNLRLSKKRAEAV 459

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
            + LM+  G+   RI K +G+A +R  +   ++P    NRR+
Sbjct: 460 RKYLMEYDGIDPKRI-KTAGYADNRPLVPNVNEPNRKKNRRV 500


>gi|126666113|ref|ZP_01737093.1| OmpA/MotB [Marinobacter sp. ELB17]
 gi|126629435|gb|EBA00053.1| OmpA/MotB [Marinobacter sp. ELB17]
          Length = 110

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            + + L    +  ISI+GH+D+        ++   NW LS  RA SA +VL ++G+   R
Sbjct: 1   MLADALKSFPDHLISIQGHSDSRSIAPALQSLYPTNWELSASRAASAVRVLREAGIDPSR 60

Query: 309 ISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342
           +  + GFA  R  +          NRRI++L+   Q
Sbjct: 61  MQAV-GFADARPLVKEIDTVSRRKNRRIEVLLYPSQ 95


>gi|332701239|ref|ZP_08421327.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332551388|gb|EGJ48432.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 282

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE+  ++ +I +++  +    I + GHTD       A  N +LS  RA + 
Sbjct: 181 FDTGKSTIKPESRTIVDEIAKMMQENAGLKIKVEGHTDNQ---GGAESNQKLSEARAKAV 237

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
            + ++  G+S  R+ K +G    +      ++   + NRR++++
Sbjct: 238 VEAILAKGISASRL-KPAGHGQTKPIADNKNEEGRAKNRRVELV 280


>gi|167588145|ref|ZP_02380533.1| OmpA/MotB [Burkholderia ubonensis Bu]
          Length = 592

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   +   P++   +    E++       I + GHTDA         N +LS+DRA 
Sbjct: 474 SLFDSGKAALKPDSTRAMVGALELIKAHPGKRILVAGHTDAV---GKPDRNLKLSVDRAA 530

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +    L+ + G++  +   I G+   R    +      + NRR++I +  
Sbjct: 531 AVRDWLVDASGIAPTQF-AIQGYGDTRPVADNATPEGRARNRRVEITLVP 579


>gi|332664792|ref|YP_004447580.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333606|gb|AEE50707.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 256

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 13/213 (6%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           + +    K      ++      ++TDL+  +  E+      ++  +      K ++  + 
Sbjct: 31  ASKEAADKALAETQTKVANLEKENTDLKTQLEAEKTRLNGEIANLRKDLDATKGQISAVQ 90

Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETI 249
           +K+  + + L    N V G+      +G+     D R   M      +   S        
Sbjct: 91  QKLDMSQAELTKVKNEVNGIFSAYKSSGLTAEERDGRLYLMTSAPMDYKTGSYALSKAQR 150

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306
             + ++   L  + +  I + GHTD+   R     +DNW LS  R+ +  + L+K+GVS 
Sbjct: 151 EAVAQLATTLKSNPKLKILVEGHTDSDKVRGGAAYQDNWELSSKRSLAICRELIKNGVSP 210

Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +++ + G      K  +      +ANRR D++
Sbjct: 211 AQVATV-GRGETMPKADNSTKEGKAANRRSDVV 242


>gi|325287126|ref|YP_004262916.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322580|gb|ADY30045.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 343

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAH 261
            +V +      + + T   IL  I D+    +   FD   S    ++  V+ +I +++  
Sbjct: 207 SVVENKAFVQTIQKVTAEDILKEITDKGIATLHINFDTGKSRIKADSYEVISEISKMMKS 266

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           + E  ISI GHTD       A  N +LS +RA +    +++ G++E R+    GF   + 
Sbjct: 267 NPELKISIEGHTDNV---GDASSNLKLSKNRAQAVLMAIVEEGINETRLKS-EGFGQTKP 322

Query: 321 KIASDPMN--SANRRIDI 336
              +      + NRR+++
Sbjct: 323 LDDNTTEEGKAQNRRVEL 340


>gi|91976354|ref|YP_569013.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91682810|gb|ABE39112.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 434

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++ S+     ++ VL+++  V+AH     I + GHTDA+        N  LS  RA + 
Sbjct: 333 FERGSAEIEQASLPVLKQLAAVIAHCPAAQIEVAGHTDAN---GKKAANEALSKRRAEAV 389

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L K+G+   ++  + G+   +    +D     + NRRI+  V+
Sbjct: 390 ADSLTKAGIGSAKLIAV-GYGSAKPLGPNDTAEARAKNRRIEFAVK 434


>gi|104782507|ref|YP_609005.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95111494|emb|CAK16214.1| putative outer membrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 257

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 10/232 (4%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           +          ++ +  L+        +        +    +E+   + + +   + +  
Sbjct: 22  ATPESPRLVEAREAFSALQGKPESHRIAALETQQAQAALGKAEEASLVSRKSPEVEQLAY 81

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISI 228
             N  +    +   L           A++  + L    A  N +K +  + T  G +++ 
Sbjct: 82  LANRRIETAEETIRLRTAEAGMRGIEARRAEARLEVRTAQLNALKALKGKETDRGTVVTF 141

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
            D     +FD   +     +   +Q++ + L  + E  + + G TD++        N RL
Sbjct: 142 GD----VLFDTGRAELRSHSHDDIQRLAQFLRDNPERKVRVEGFTDST---GGDALNLRL 194

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           S +RA +    L + GV   RI     G A      A       NRR++++V
Sbjct: 195 SENRAAAVAHALRRQGVDPARIVSAGYGKASPVASNADAHSRQLNRRVEVIV 246


>gi|319787865|ref|YP_004147340.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317466377|gb|ADV28109.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 369

 Score = 86.1 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+ + +L +  E+L    +  + + GHTD+   R     N +LS  RA + 
Sbjct: 260 FDYDKATLRPDAVAILSEAAEILKRYPDLRVEVAGHTDS---RGTDAYNQKLSERRAKAV 316

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L  +G+   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 317 YDYLTSNGIDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 369


>gi|298372486|ref|ZP_06982476.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275390|gb|EFI16941.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 567

 Score = 86.1 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + +    E+   L K  + L  +  V I+I GHTD+   R     N +LS  RA S 
Sbjct: 466 FNTNDTSLTAESNKELDKQAKFLKENPNVNITIVGHTDS---RGSDEYNLKLSEGRAVSV 522

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            + L+  G++ +R+    G    +   +++     + NRRI+I V
Sbjct: 523 MRALIDRGIAPERLKA-EGRGETQPVASNETEEGRAENRRIEIEV 566


>gi|224824498|ref|ZP_03697605.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224602991|gb|EEG09167.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 218

 Score = 86.1 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                + QS+  K ++                  S           +    + A    + 
Sbjct: 23  TTNPQTGQSQMSKTAMYGLGAAAACGIAGAATHGSKGARNAALGCGIVGAGVGAYMDYQE 82

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
                K++   L+          V  +     I +++ D      F  +S+   P     
Sbjct: 83  -----KQLRDKLANT-------QVGVDRVGDQIKLTMPDNIT---FAVNSAELQPSVRTA 127

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +  VL    +  I++ GHTD +   N+A  N  LS  RA S    L   GV+  RI+
Sbjct: 128 LTDVSNVLTQYPDTTITVAGHTDNT--GNVAY-NQTLSQRRAQSVAGFLQSRGVAGSRIN 184

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            + G+  ++   ++      + NRR++IL+  +
Sbjct: 185 PV-GYGQNQPIASNTTAEGRAKNRRVEILINPK 216


>gi|237745869|ref|ZP_04576349.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes HOxBLS]
 gi|229377220|gb|EEO27311.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score = 86.1 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++   +++ +   G   +      + +T+   I +SI    +   F  +S+   P+   +
Sbjct: 77  MEKQKQEMQTATQGTGVE------VVQTSDNQIKVSI---PSDVSFATNSATISPQFKTI 127

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ +   L ++    I++ G+TD +        N  LS +RA S    L+  GV+ +R +
Sbjct: 128 LRDLATTLKNNPSTSITVIGYTDNT---GSDAINQPLSRERAMSVRNYLVSQGVAANRFT 184

Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            + G        ++      + NRR++I V +R
Sbjct: 185 -VEGRGSSDPIASNLTAAGRAENRRVEIYVGER 216


>gi|347153|gb|AAC36899.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 86.1 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A   +  + + GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPDTNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGVAPSRITSV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|254486344|ref|ZP_05099549.1| flagellar motor protein [Roseobacter sp. GAI101]
 gi|214043213|gb|EEB83851.1| flagellar motor protein [Roseobacter sp. GAI101]
          Length = 598

 Score = 86.1 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D      +   +       T      QR    +     + + +  +     D    +D  
Sbjct: 343 DAQKQAALLAAAQSALSQETATSAAAQRQTELLNQQVAALRGQLGELQSLLDDAVARDAV 402

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           K   L+   +          ++E+  A       + L  + +  L    ++   +     
Sbjct: 403 KEVQLQSLGSDLNTALARVAAEERRRAELEAAERKRLEAE-TKNLEQYRSEFFGRLRDLL 461

Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISI 268
             + G+ I        +  +F   ++    +    + K+ E+L             VI +
Sbjct: 462 GNQAGVRIEGDRFVFSSEVLFPPGAAQLSTDGQREIAKVAEILRNIAADIPPEIDWVIRV 521

Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325
            GHTD  P        DNW LS  RA S  + ++   G++ DR++  +GF  ++     D
Sbjct: 522 DGHTDNQPLSGLGAFADNWELSQARALSVVKYMINFLGIAPDRLAA-NGFGQYQPVAEGD 580

Query: 326 PMNSA--NRRIDILVEDR 341
             ++   NRRI++ + ++
Sbjct: 581 SESARAQNRRIELKLTEK 598


>gi|78187197|ref|YP_375240.1| OmpA family protein [Chlorobium luteolum DSM 273]
 gi|78167099|gb|ABB24197.1| OmpA family protein [Chlorobium luteolum DSM 273]
          Length = 229

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D  V G   E     I + + D     +F   S+     +   ++K+  +L    +  + 
Sbjct: 87  DRDVDGARVERVGESIRV-VFDS--GILFTTGSATITSTSRYNIEKLARILNRYPDTNMV 143

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+         N  LS  RA S   +L   GVS  R+S + G+   R   +++  
Sbjct: 144 IEGHTDSI---GSETQNQLLSERRAESVATLLKTYGVSSSRLSPV-GYGETRPVASNETE 199

Query: 328 --NSANRRIDILV 338
                NRR+++L+
Sbjct: 200 TGRRQNRRVEVLI 212


>gi|85711329|ref|ZP_01042388.1| Outer membrane protein and related
           peptidoglycan-associated(lipo)proteins [Idiomarina
           baltica OS145]
 gi|85694830|gb|EAQ32769.1| Outer membrane protein and related
           peptidoglycan-associated(lipo)proteins [Idiomarina
           baltica OS145]
          Length = 188

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           + G   +  R G  I +        F   S+        VL+ +  VL    +  + I G
Sbjct: 59  LSGSGVQVIRDGDNIRLQ-LPGNITFASESANISQNFYPVLEDVAAVLNKYNKTTMMIEG 117

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++     A  N +LSL+RA +    L+  GV   R++   GF   +    +D     
Sbjct: 118 HTDST---GSADYNQQLSLNRANAVRNYLVGYGVDSRRVT-TQGFGESQPIATNDTAQGR 173

Query: 329 SANRRIDILVEDRQ 342
             NRR+++ +   Q
Sbjct: 174 QQNRRVELRIIPNQ 187


>gi|149377133|ref|ZP_01894882.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
 gi|149358551|gb|EDM47024.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
          Length = 222

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G      R G  I ++       FD + S   P     L+ +  VL    + +I I G
Sbjct: 94  LEGSGVRVVRNGDEIELV-MPGNITFDVNQSSIKPSFSNTLESVALVLKEFDKTIIQIEG 152

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++        N  LS  RA S    L+  G+   R ++ +G+       ++D  +  
Sbjct: 153 HTDST---GSRDYNQLLSERRAGSVRDFLLNQGIEPKR-TRATGYGPRYPIASNDTESGR 208

Query: 331 --NRRIDILVEDRQ 342
             NRR+++ +   Q
Sbjct: 209 EQNRRVELTLVPMQ 222


>gi|238783359|ref|ZP_04627383.1| hypothetical protein yberc0001_33370 [Yersinia bercovieri ATCC
           43970]
 gi|238715782|gb|EEQ07770.1| hypothetical protein yberc0001_33370 [Yersinia bercovieri ATCC
           43970]
          Length = 574

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S      T V++  +  + A    +I + GHTD        + N  LSL RA 
Sbjct: 442 SLFDVGKSELKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQTLSLKRAE 498

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R   ++D     +ANRR++I +  +
Sbjct: 499 SVRNWMRDTGDIPESCFAVQGYGQSRPLQSNDTEAGRAANRRVEISLVPQ 548


>gi|311746197|ref|ZP_07719982.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
 gi|126576424|gb|EAZ80702.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
          Length = 640

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               FD       PE++  L+++ + L  ++ V I I GHTD          N  LSL R
Sbjct: 535 ENIFFDFDKYDLKPESLSSLKRLLKFLKENSNVNILISGHTDNV---GSPSYNQELSLKR 591

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           A S  Q L++ G+   R+  + G       + +      + NRRI + V 
Sbjct: 592 AQSVQQYLVEQGMHPGRVM-VEGKGDKEPMVPNTNSQNQALNRRITVKVL 640


>gi|170722686|ref|YP_001750374.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169760689|gb|ACA74005.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 270

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 20/278 (7%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F P     + A  G          ++         + +  +S  L+    +  +  + L 
Sbjct: 4   FKPMAALALLALAGGLQGCASQRSAAALDDASVAFQKVKDDSAVLRSAPRDVIRAGESLA 63

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                 S        ++         +   +   L  S  +     L     +  L   +
Sbjct: 64  RAERLSSYIGTGSDVRHYAYLSQRYSEIAGEHAKLALSQERLAKLDLERQRLQLALREAK 123

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              +Q   + + + ++ L +              G+++++ D     +FD   +      
Sbjct: 124 LASVQQQGEWVEAQIAALASQQA---------DRGLVMTLGD----VLFDTGRADLKNSA 170

Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              + K+ + L  +   +  I G+ D +       DN +LS DRA +   +L+  GV E 
Sbjct: 171 SRTVLKLVQFLQLNPRRVVRIEGYADNT---GAPEDNLKLSRDRAQAVADMLVDLGVDEK 227

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
           R+ ++ G+         AS+   + NRR++I+  D +G
Sbjct: 228 RL-QVEGYGDQYPIEANASERGRAQNRRVEIVFSDDKG 264


>gi|304312291|ref|YP_003811889.1| hypothetical protein HDN1F_26630 [gamma proteobacterium HdN1]
 gi|301798024|emb|CBL46246.1| Hypothetical protein HDN1F_26630 [gamma proteobacterium HdN1]
          Length = 224

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           ++ +F+ S S    + +  ++K+ +VL       ISI GHTD       A  N +LS  R
Sbjct: 103 DSILFESSQSNVSRKGMPFIRKVADVLNAYPRSSISIEGHTDNM---GEANYNQKLSEAR 159

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A S    L K+GV   R+S  +GF   +  + +        NRR++I+V
Sbjct: 160 ANSVMNALNKAGVESSRMSA-TGFGMSKPLVENTSSSNRRTNRRVEIVV 207


>gi|149925845|ref|ZP_01914109.1| outer membrane protein, OmpA/MotB family [Limnobacter sp. MED105]
 gi|149825962|gb|EDM85170.1| outer membrane protein, OmpA/MotB family [Limnobacter sp. MED105]
          Length = 222

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + L GL    +   +     R G +  ++D     +FD + S    +    L +I   L 
Sbjct: 86  AALGGLFGYLVGSQIAVREQRDGSV--MLDIPGAALFDTNKSDVKAQFAGTLDQIAATLR 143

Query: 261 HSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
            +   I  + G+TD++      + N  LS+ RA S    L   G+S  R++  +G     
Sbjct: 144 DNPNTIVCVIGYTDST---GSDQYNQDLSVRRAQSVTNFLTAKGISGARLTA-AGLGEGF 199

Query: 320 LKIASDPM--NSANRRIDILVED 340
              ++D     + NRR+++ V +
Sbjct: 200 PVASNDTESGRAQNRRVEMYVRN 222


>gi|76809643|ref|YP_335000.1| OmpA family domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|226198194|ref|ZP_03793765.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254190435|ref|ZP_04896943.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254259878|ref|ZP_04950932.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254300689|ref|ZP_04968134.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|76579096|gb|ABA48571.1| OmpA family domain protein [Burkholderia pseudomallei 1710b]
 gi|157810473|gb|EDO87643.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|157938111|gb|EDO93781.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|225929714|gb|EEH25730.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|254218567|gb|EET07951.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 310

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 220 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305


>gi|90406796|ref|ZP_01214988.1| flagellar motor protein [Psychromonas sp. CNPT3]
 gi|90312033|gb|EAS40126.1| flagellar motor protein [Psychromonas sp. CNPT3]
          Length = 307

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 14/183 (7%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
            D   +I  E            +  +K    L+ L  ++   LS  + + ++K    +  
Sbjct: 85  EDSGPAIRSEGMINQANDELSDVDTLKAGWELKQLKTELEVLLSSEIDEEVLK---LDLD 141

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
              + I +       +F   S   L      L KI E L     ++ IRG+TD +   + 
Sbjct: 142 GDWLTIEM---GGDLLFAGGSHTLLIAAKKRLNKISEALKPINNLLRIRGYTDNNLIADE 198

Query: 281 AR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS----DPMNSANRRID 335
               NW LS  RA+S    L   G+   R+  +  +  + L   +    D + S  RR+ 
Sbjct: 199 IYQSNWELSGARAFSVLHALNSHGIDGRRMV-VEAYGRYTLAKDAQGKIDKLGS--RRVV 255

Query: 336 ILV 338
           I +
Sbjct: 256 IAI 258



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 19  KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI------------E 66
           +      + N+L  W + +ADFMT++ A F++++ ++   ++  K +            +
Sbjct: 6   RTRLKMHSGNDLHRWTVSFADFMTLMFAVFVLLYAVSINQEEQYKEVIVKIQKASKLLNQ 65

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104
             F+   + ++T +     E + P   S+  I+ + DE
Sbjct: 66  SVFSSEREGILTENSNSIIEDSGPAIRSEGMINQANDE 103


>gi|4580970|gb|AAD24557.1|AF117965_1 OprF [Pseudomonas marginalis pv. marginalis]
          Length = 321

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K GV+  R++ + G+   R     A++   + NRR++
Sbjct: 278 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 318


>gi|308186535|ref|YP_003930666.1| type VI secretion system, core protein [Pantoea vagans C9-1]
 gi|308057045|gb|ADO09217.1| Putative type VI secretion system, core protein [Pantoea vagans
           C9-1]
          Length = 412

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285
           S++  +   +F  +++      I V+++I   + + +  I + G++D  P R+     N+
Sbjct: 281 SVVTLKGDGLFASAATEVRGGYIDVIRRIAAAMNNVSGQIQVIGYSDNVPIRSARFASNF 340

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            LSL RA S   +L +      R+    G       + +      + NRR++I + 
Sbjct: 341 ELSLARARSVQTLLQQQLAQPSRVKA-EGRGESNPLVPNTSAENRARNRRVEITLL 395


>gi|197124193|ref|YP_002136144.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196174042|gb|ACG75015.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 543

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286
           I+ +    FD   +    ++  +L  + +++A +    V++I GHTD++     A  N  
Sbjct: 429 IEIKEKVYFDTGKATIKAQSNALLDDVAKLIAANPQVGVVTIEGHTDST---GSAATNRA 485

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS  RA +    L+  GV   R+    GF   +   ++       ANRR++  +++
Sbjct: 486 LSQKRAEAVKDYLVSKGVDASRLEA-KGFGPDQPVESNKTAKGREANRRVEFTIQN 540


>gi|73540381|ref|YP_294901.1| OmpA [Ralstonia eutropha JMP134]
 gi|72117794|gb|AAZ60057.1| OmpA [Ralstonia eutropha JMP134]
          Length = 212

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           G    I +Q +  +         FD  S+   P    VL ++ + L  H   V ++ GHT
Sbjct: 84  GTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHT 143

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A+ N +LS  RA S    L   GV+ +R+S   G    +    +        
Sbjct: 144 DST---GNAQYNMQLSQRRAQSVATYLGDRGVARNRLSA-EGRGQTQPVADNATEAGRTQ 199

Query: 331 NRRIDILVEDRQG 343
           NRR++I ++  QG
Sbjct: 200 NRRVEIFLKPIQG 212


>gi|237742260|ref|ZP_04572741.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|256845531|ref|ZP_05550989.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294785172|ref|ZP_06750460.1| OmpA family protein [Fusobacterium sp. 3_1_27]
 gi|229429908|gb|EEO40120.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|256719090|gb|EEU32645.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294486886|gb|EFG34248.1| OmpA family protein [Fusobacterium sp. 3_1_27]
          Length = 212

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  +++ + L G  A               ++I++        F   S+         L
Sbjct: 74  DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANISSGFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD +        N  LS  RA +  Q L+  GV+ +RI  
Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVASNRIVA 180

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++        NRR++I +   Q
Sbjct: 181 -NGFGSSNPVASNSTQEGRLQNRRVEIKILPAQ 212


>gi|220918973|ref|YP_002494277.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956827|gb|ACL67211.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 544

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286
           ID +    FD        ++  +L  + +++A +    V++I GHTD++     A  N  
Sbjct: 430 IDIKEKVYFDTGKDTIKAKSNALLDDVAKLVAANPQVGVVTIEGHTDST---GSAATNRA 486

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS  RA +    L+  GV   R+    GF   +   ++       ANRR++  +++
Sbjct: 487 LSQKRAEAVKDYLVSKGVDASRLEA-KGFGPDQPVESNKTAKGREANRRVEFTIQN 541


>gi|299066021|emb|CBJ37202.1| putative outer membrane lipoprotein [Ralstonia solanacearum CMR15]
          Length = 209

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + E L+  
Sbjct: 73  SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLSQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   ++ GHTD++        N  LS  RA S    L   GV+  R+S   G    +  
Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVASYLTDRGVARTRLSA-EGRGQTQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   + NRR++I ++  QG
Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209


>gi|167564292|ref|ZP_02357208.1| ompA family protein [Burkholderia oklahomensis EO147]
          Length = 243

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 96  EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 153 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRASNIALSQARADAVKGYLVAKGIASQ 209

Query: 308 RISKISGFAHHRLKIASDPM--NSANRRID 335
           +++  +G    +   ++D     + NRRI+
Sbjct: 210 QLT-TTGVGPDQPIASNDTNDGRARNRRIE 238


>gi|74318472|ref|YP_316212.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057967|gb|AAZ98407.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
          Length = 402

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S    P++I +L      L       + + GHTD++        N  LS  RA + 
Sbjct: 301 FEPGSVRLTPDSITILDNAAASLNAWGEVRVEVAGHTDSTHSAAF---NLELSQRRAEAV 357

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L+K GV  +R++   G+   +    +      + NRR++++
Sbjct: 358 RAYLVKKGVRAERLTA-RGYGESQPVADNRTAAGRAQNRRVELV 400


>gi|288575422|ref|ZP_06393704.1| OmpA family protein [Neisseria mucosa ATCC 25996]
 gi|288568103|gb|EFC89663.1| OmpA family protein [Neisseria mucosa ATCC 25996]
          Length = 190

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +K    E  R G  I ++   N   F   S+         L    E L    +  ++I
Sbjct: 50  ENLKNTNIEVERQGNQIKLVMPENVT-FATGSAALSDHARNALATASETLVQYPDTTLTI 108

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +        N  LS +RA +    L   GV+  R++  +G+       ++    
Sbjct: 109 NGHTDNT---GNDAINEPLSRNRALAVADYLQSRGVNGSRLT-TAGYGSRHPIASNATVE 164

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 165 GRAQNRRVEILINPDQ 180


>gi|15598888|ref|NP_252382.1| Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1]
 gi|107103206|ref|ZP_01367124.1| hypothetical protein PaerPA_01004275 [Pseudomonas aeruginosa PACS2]
 gi|116051689|ref|YP_789472.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890031|ref|YP_002438895.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254236602|ref|ZP_04929925.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719]
 gi|254242387|ref|ZP_04935709.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192]
 gi|296387801|ref|ZP_06877276.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           PAb1]
 gi|313109098|ref|ZP_07795070.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|9949856|gb|AAG07080.1|AE004788_10 Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1]
 gi|115586910|gb|ABJ12925.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168533|gb|EAZ54044.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719]
 gi|126195765|gb|EAZ59828.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192]
 gi|218770254|emb|CAW26019.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|310881572|gb|EFQ40166.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 261

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 90/237 (37%), Gaps = 13/237 (5%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
           T  + +L+   +N      + +        ++ +        +  + G+D      L   
Sbjct: 22  TPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
            N+        +      A  +    Q    ++ +  + L  D +   +  + T  G ++
Sbjct: 82  TNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           +  D     +FD   S   P  +  +Q++ E L  + E  + + G+TD++     A  N 
Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           RLS  RA S    L+  G+S +R+    G+       ++      + NRR+++ + +
Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248


>gi|261417296|ref|YP_003250979.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373752|gb|ACX76497.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325429|gb|ADL24630.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 659

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+     +   L  I E++    E  + ++GHTD    +   + N +LS DRA + 
Sbjct: 556 FKTASARLTKSSYGTLDDIAELMIKIPEANLEVQGHTDN---KGSEKRNKKLSEDRAAAV 612

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            + L+K GV++DR+ + +G+   +    +      + NRR++++
Sbjct: 613 VKYLVKKGVAKDRL-RAAGYGSEKPIADNTDAAGRAQNRRVELV 655


>gi|315497454|ref|YP_004086258.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48]
 gi|315415466|gb|ADU12107.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
          Length = 222

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 18/205 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           ++ K +    +  G  L  +T+  K     +N  +       +      + +     ++ 
Sbjct: 32  DNTKTNAIIGAAVGAGLGYATNTNKGEQGRKNAVI-GAGIGALAGAAVGQYMDKQQAELR 90

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L+G              TR G  I I++  +   F   S+        VL  +  +L 
Sbjct: 91  RELAGT---------NVTVTRNGDNI-ILNMPSDVTFGSGSASIDASFYPVLNDVASILN 140

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 + I GH D++        N  LS DRA S    L   GV   R+  ++G    +
Sbjct: 141 KYPSTYVDIVGHADST---GSDAINEPLSEDRANSTAAYLTSRGVVNQRLF-VAGMGSRQ 196

Query: 320 LKIASDP--MNSANRRIDILVEDRQ 342
              ++      + NRR++I +   Q
Sbjct: 197 PIASNATPEGRAKNRRVEITLRPVQ 221


>gi|313203319|ref|YP_004041976.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312442635|gb|ADQ78991.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 817

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+       P++  +L +I  V+  +   +I +RGHTD       A+ N  LS  RA S 
Sbjct: 709 FETGKDKIKPKSYPILNQIAAVMTANPTYLIEVRGHTDNV---GDAKLNQVLSQKRAESV 765

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
            + L+  G+   R++  +G+        +        NRR++
Sbjct: 766 RKYLIGKGIDSKRMTA-NGYGDTLPVSTNSTPAGRTLNRRVE 806


>gi|119474693|ref|ZP_01615046.1| hypothetical protein GP2143_12776 [marine gamma proteobacterium
           HTCC2143]
 gi|119450896|gb|EAW32129.1| hypothetical protein GP2143_12776 [marine gamma proteobacterium
           HTCC2143]
          Length = 209

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS+   L +++++  +     +   L+  +A           T T   I I     + +
Sbjct: 42  ELSQTLELEIQKRQAEEQRRMALEQALAAPLATG-------RVTLTNGRIGIS---GSVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S     E   +LQ +   L        E++ + G TD  P +       DNW LS 
Sbjct: 92  FATNSDQLQVEGRELLQTLVAPLQVYLGERDEMLMVSGFTDDKPIQRGNNRFADNWELSS 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           +RA +  + L++ G+    +   + F   +  + +      + NRR++
Sbjct: 152 ERALTVTRALIEEGMPSSMVFAAA-FGAQQPVVPNTDGDSRARNRRVE 198


>gi|228471770|ref|ZP_04056543.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276923|gb|EEK15618.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 455

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 25/269 (9%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P  K+      G+ +    P+       D        K   +               ++ 
Sbjct: 205 PDNKDACPEVPGLKEFNGCPDTDGDGIPDKDDACPQVKGPKEFNGCPDTDGDGIPDKDDA 264

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              ++  ++   C ++         D C            EN   P    +    + +  
Sbjct: 265 CPEVAGPKEFNGCPDTDGDGIPDKDDKCPDV-----AGPAENGGCPWPDTDGDGVLDKDD 319

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
              ++A   S+       +   K              +     T +FD   +    ++  
Sbjct: 320 LCPEVAGPASNKGCPEPDEKEQK-------------QLNQYAKTILFDTGKATIKFQSAE 366

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL +I  VL         I GHTD++        N  LS +RA +    L++ G+   R+
Sbjct: 367 VLNQIINVLKKYPNSRFRIEGHTDST---GKKAKNMILSQNRADAVKVYLIQGGIDAGRL 423

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDI 336
               GF   +      +      NRR++I
Sbjct: 424 ES-QGFGPEKPIASNKNKKGRELNRRVEI 451


>gi|26988234|ref|NP_743659.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24982975|gb|AAN67123.1|AE016341_6 OmpA family protein [Pseudomonas putida KT2440]
          Length = 263

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 18/235 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  Q+       T+D++   +      +++   K+      
Sbjct: 21  SHDPNANLESARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEAELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI S+  G  +     +S+   + NRR+++ + +
Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248


>gi|289672566|ref|ZP_06493456.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae
          FF5]
          Length = 48

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57
          EN+Q IIIK+ V      ++ G+WKI +ADF T +MAFFLV+W+I+++
Sbjct: 2  ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLISSS 48


>gi|317049660|ref|YP_004117308.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b]
 gi|316951277|gb|ADU70752.1| OmpA/MotB domain protein [Pantoea sp. At-9b]
          Length = 528

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           +I    +  +FD   +   P  T ++++ +  + A    +I I GHTD +        N 
Sbjct: 389 TIAQLDSLALFDSGKAELKPGSTKMLIKALVGIRAKPGWLIVISGHTDNT---GDPAFNQ 445

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +LSL RA +    +  +G   +    + G+   R  + +D     + NRR+DI +  +
Sbjct: 446 QLSLQRAEAVRNWMRDTGAIAESCFAVQGYGVSRPLVTNDTPEGRATNRRVDIRLVPQ 503


>gi|254292855|ref|YP_003058878.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
 gi|254041386|gb|ACT58181.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
          Length = 222

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 21/218 (9%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           +  +     + +  +                L  ++  E++                   
Sbjct: 20  QTTDPYSRETKTSNTAKGAAIGALGGAVLGALTNTSSGEQAAKNAMIGAGIGAIAGGASG 79

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               ++ + L +++  T  G              TR G  I ++       F    +   
Sbjct: 80  RYMDQQEKKLRERLDETGVG-------------VTRVGDTIQLV-MPGDITFATGRAEIN 125

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            +   VLQ +G VL    + V+ I GHTD        + N  LS  RA +    LM+ G+
Sbjct: 126 NQFDYVLQDVGLVLQEFDKTVVFIDGHTDTV---GSYQKNDELSQARANNVAARLMQEGI 182

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              R+  ++G+   RLK+ +        NRR++I +E 
Sbjct: 183 LGGRLV-VTGYGESRLKVPTGDGVNEPLNRRVEIRLEP 219


>gi|295133926|ref|YP_003584602.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294981941|gb|ADF52406.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 281

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           QK + ++ E    Y +   +       +        +  +  D+    NK ++     ++
Sbjct: 42  QKTRVEKEEIEEKYAAIEARVADYNAKINSLRSSNDEKLEMNDVTAMSNKTKDRMRKTIA 101

Query: 180 KEKILAMKRKKRLQD-LAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMF 237
           K     ++  + L+D +   IS  L   + +      V     +T ++I++ D     +F
Sbjct: 102 KMDASELEGVETLEDSINAAISYNLKNEITEGKDGDDVDITVDKTVVMINVSD---KLLF 158

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYS 294
              S     +   +L+K+ EV+       + + GHTD       +   DNW LS+ RA +
Sbjct: 159 RSGSYRLSNDAQPLLKKLAEVINSEPSMEVMVEGHTDNRTMVEDSWLEDNWDLSVRRATA 218

Query: 295 AYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             + L     V   ++   +G + +   + +   +  + NRR  I+V  
Sbjct: 219 VVRQLQDKYDVDGAKLIA-AGRSSYSPLVENTSKDNMAKNRRTRIVVIP 266


>gi|238895326|ref|YP_002920061.1| hypothetical protein KP1_3385 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547643|dbj|BAH63994.1| hypothetical protein KP1_3385 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 565

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257
           + + ++        + V+ +  +    I +    +  +FD   S   P +  +L   +  
Sbjct: 401 VEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSALKPGSTKLLVNSLLG 457

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           + A    +I + GHTD+       R N +LSL RA +    +  +G   +    + G+  
Sbjct: 458 IKAKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGA 514

Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342
            R   +++     + NRR++I +  ++
Sbjct: 515 SRPVASNETPEGRAQNRRVEISLVPQK 541


>gi|206577657|ref|YP_002237882.1| OmpA domain protein [Klebsiella pneumoniae 342]
 gi|206566715|gb|ACI08491.1| OmpA domain protein [Klebsiella pneumoniae 342]
          Length = 565

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L   + + ++        + V+ +  +    I +    +  +FD   S   P +  +L
Sbjct: 395 MRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLL 451

Query: 253 -QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
              +  + A    +I + GHTD+       + N +LSL RA +    +  +G   +    
Sbjct: 452 VNSLLGIKAKPGWLIVVAGHTDSI---GNDKSNQQLSLKRAEAVRDWMRDTGDVPESCFA 508

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           + G+   R   +++     + NRR++I +  ++
Sbjct: 509 VQGYGASRPVASNETPEGRAKNRRVEISLVPQK 541


>gi|194290514|ref|YP_002006421.1| outer membrane lipoprotein [Cupriavidus taiwanensis LMG 19424]
 gi|193224349|emb|CAQ70360.1| putative outer membrane lipoprotein [Cupriavidus taiwanensis LMG
           19424]
          Length = 212

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           G    I +Q +  +         FD  S+   P    VL ++ + L+ H     ++ GHT
Sbjct: 84  GTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLSQHQDVSANVVGHT 143

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330
           D++        N +LS  RA S    L   GV+ +R+S   G    +    +  +   + 
Sbjct: 144 DST---GNPNYNMQLSQRRAQSVAGYLGDRGVARNRLSA-EGRGQSQPVADNGTEAGRAQ 199

Query: 331 NRRIDILVEDRQG 343
           NRR++I ++  QG
Sbjct: 200 NRRVEIFLKPIQG 212


>gi|194364578|ref|YP_002027188.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347382|gb|ACF50505.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 362

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 253 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 309

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 310 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 362


>gi|49083000|gb|AAT50900.1| PA3692 [synthetic construct]
          Length = 262

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 13/237 (5%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
           T  + +L+   +N      +          ++ +        +  + G+D      L   
Sbjct: 22  TPPNANLEQARSNFSALQSQPGATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
            N+        +      A  +    Q    ++ +  + L  D +   +  + T  G ++
Sbjct: 82  TNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           +  D     +FD   S   P  +  +Q++ E L  + E  + + G+TD++     A  N 
Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           RLS  RA S    L+  G+S +R+    G+       ++      + NRR+++ + +
Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248


>gi|261253627|ref|ZP_05946200.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
 gi|260937018|gb|EEX93007.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
          Length = 320

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+   PE+  +L ++ + +    +  + I G+TD+      A  N  LS  RA + 
Sbjct: 212 FALNSTELKPESKSLLSELVQFMEQYPQANVEITGYTDS---SGAAEYNQMLSEKRAQAV 268

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L   GV   RI+ +SG   +    ++D     + NRR++I V
Sbjct: 269 ANELESQGVESSRIT-VSGEGENNPIASNDTRGGRAQNRRVEITV 312


>gi|254785154|ref|YP_003072582.1| OmpA family protein [Teredinibacter turnerae T7901]
 gi|237683675|gb|ACR10939.1| OmpA family protein [Teredinibacter turnerae T7901]
          Length = 216

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++G   +  R G  I++I       F   S    PE   VL  + +VL    + VI +
Sbjct: 86  QQLQGSGVQVQRDGNTINLI-MPGNITFATDSFDIKPEFHSVLDSVAQVLKEFKKTVIVV 144

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD++     A  N +LS +RA S    L+   V+  R+  + G+       ++    
Sbjct: 145 SGHTDST---GSATYNQQLSENRANSVRSYLLNRSVASGRVQAV-GYGPRMPIASNKTAQ 200

Query: 327 MNSANRRIDILVEDRQ 342
               NRR+++ +E  +
Sbjct: 201 GRQQNRRVELKLEPTE 216


>gi|239816213|ref|YP_002945123.1| hypothetical protein Vapar_3239 [Variovorax paradoxus S110]
 gi|239802790|gb|ACS19857.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 218

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 21/178 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L+ +    +++++      + +   L+G +A           T     I I     + +
Sbjct: 43  DLAAKLQAEVQQRQAETQRREALEQALAGPLAAG-------RVTLNNGRIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFR------NIARDNWR 286
           F  +S+   PE   VL+ +       L    EV+ + G TD    R          DNW 
Sbjct: 93  FAFNSAELQPEGRQVLKSLAAPVASYLRARDEVLMVSGFTDDRQMRQSKDGNRPFADNWE 152

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343
           LS  RA +  + L++ GV    +   +  +   +   +D    + NRR+++    RQ 
Sbjct: 153 LSAQRALTVTRALIEEGVPSSSVFAAAFGSEQAVASNADAEGRAKNRRVEMAPTPRQA 210


>gi|19704600|ref|NP_604162.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714896|gb|AAL95461.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 202

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  +++ + L G  A               ++I++        F   S+         L
Sbjct: 64  DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANITSGFYSAL 113

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD +        N  LS  RA +  Q L+  GVS +RI  
Sbjct: 114 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSNRIVA 170

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++        NRR++I +   Q
Sbjct: 171 -NGFGSSNPIASNSTPEGRLQNRRVEIKILPAQ 202


>gi|83643650|ref|YP_432085.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83631693|gb|ABC27660.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 464

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 11/129 (8%)

Query: 218 ETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           +    G  I + +     +   F  +S+    E +  ++K+ E +    +    + GHTD
Sbjct: 333 KVDNRGCRIQLSETVTITLNVTFPTNSAAITDEFVSEVEKLAEFMRQYPDTKAVVEGHTD 392

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330
               R     N +LS  RA +  Q++++  G++ +RIS + G+   R    ++     SA
Sbjct: 393 D---RGQDAYNQKLSEKRASAVRQMVVERFGIAGERISSV-GYGETRPIGDNNTADGRSA 448

Query: 331 NRRIDILVE 339
           NRR+  +VE
Sbjct: 449 NRRVVGVVE 457


>gi|186471185|ref|YP_001862503.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184197494|gb|ACC75457.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 215

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS     A+K+++      K +   L+G +A           T     I I       +
Sbjct: 43  ELSARLDDAVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S    P+   +L+ +   L+       E++ + G  D    R   R   DNW LS 
Sbjct: 93  FALNSDQLQPQGRDLLKSLAAPLSAYLRSHDEILMVSGFADDQQVRAGNRRFADNWELSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            RA +  +  + SG+    +   + F   +     A     + NRR++I    R
Sbjct: 153 QRALTVTRAFIDSGIPASSVFAAA-FGSEQPVSSNADSEGRAKNRRVEIAAVPR 205


>gi|88798562|ref|ZP_01114146.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Reinekea sp. MED297]
 gi|88778662|gb|EAR09853.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Reinekea sp. MED297]
          Length = 224

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    K++   L G        GV  + T  G  I +I       FD +SS      I  
Sbjct: 82  MDQQEKELRDELVGT-------GVQVKRTEEG-QIDLI-MPGNITFDVNSSTVADGFIPT 132

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ + +VL       ++I GHTD+         N  LS  RA S   ++++ G+  +R++
Sbjct: 133 LRSVAKVLKEYENTLVTISGHTDS---SGSEDYNQLLSEQRATSVANIILQEGIVVERVA 189

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339
             +G+   +   ++D     + NRR++I ++
Sbjct: 190 A-AGYGELQPIASNDTPEGRAENRRVEITLD 219


>gi|310814625|ref|YP_003962589.1| OmpA family protein [Ketogulonicigenium vulgare Y25]
 gi|308753360|gb|ADO41289.1| OmpA family protein [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 10/209 (4%)

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
               Q+                +  +   + S ++  N  +       + A+  +   + 
Sbjct: 24  PIQGQTNDNTRQGAMVGAGLGAVVGALTGDDSNDRWRNAAIGAAVGGGLGAVGGQALDRQ 83

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
            A+   +     +   +   V        + +++       +F  +S+    ++   L+ 
Sbjct: 84  EAELARARQEAELRQQLGGNVGIVNNGQNLTVTM---PQDVLFGTNSTAVSIQSQTDLRT 140

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L       IS+ GHTD++     A  N  LS+ RA +   VL+  GV+  R+  + 
Sbjct: 141 VAASLNRYPNTSISVIGHTDST---GSASYNQDLSVRRAQAVASVLINGGVAPARVYTV- 196

Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVED 340
           G    +   ++   +    NRR++I++  
Sbjct: 197 GRGASQPIASNATPDGRQLNRRVEIIITP 225


>gi|146283087|ref|YP_001173240.1| OmpA family protein [Pseudomonas stutzeri A1501]
 gi|145571292|gb|ABP80398.1| OmpA family protein [Pseudomonas stutzeri A1501]
 gi|327481439|gb|AEA84749.1| OmpA family protein [Pseudomonas stutzeri DSM 4166]
          Length = 260

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 16/239 (6%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
              +N  D +   +  +   +  +       ++       N    +    K + +   L 
Sbjct: 23  QPNQNLEDARSSYSALQADSRASKLAALETQDAGNMLDKANKAYLNDADEKTVDQLAYLT 82

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           K   +     +   S E+ L     +R +   +   + +  L  D   K      T  G 
Sbjct: 83  KRRIELAEQTIALRSAEEELGKTSAQRAEARLEAREAQIRKLQEDMQAKQ-----TERGT 137

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L++  D     +FD   +   P  +  +QK+ + L  + E  + + G+TD++     A  
Sbjct: 138 LVTFGD----VLFDYDRAELKPGGMRSVQKLADFLNDNPERKVIVEGYTDST---GSAEY 190

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           N RLS  RA +    L+K GV   RI    G+         +     + NRR+++ + D
Sbjct: 191 NQRLSERRADAVRMALVKMGVDPQRIVS-QGYGKEYPVASNSDSAGRAMNRRVEVTISD 248


>gi|312962474|ref|ZP_07776965.1| Outer membrane porin F [Pseudomonas fluorescens WH6]
 gi|311283401|gb|EFQ61991.1| Outer membrane porin F [Pseudomonas fluorescens WH6]
          Length = 326

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+K GV+  R++ + G+   R     A++   + NRR++  VE
Sbjct: 278 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|315225528|ref|ZP_07867338.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287]
 gi|314944472|gb|EFS96511.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287]
          Length = 456

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E T   +   + D   T +FD + +   P++  VL +I +VL        SI G+TD   
Sbjct: 336 EVTEE-VQKKLNDFARTILFDVNKATIKPQSATVLNQIVDVLNQYKNAKFSIEGYTD--- 391

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
                  N +LS DRAYS    L++ G+ E R++   GF   +   ++        NRR+
Sbjct: 392 ISGKRDKNQKLSEDRAYSVKAYLIEKGIDEGRLTA-KGFGPDKPIASNKTKKGRELNRRV 450

Query: 335 DI 336
           +I
Sbjct: 451 EI 452


>gi|237744199|ref|ZP_04574680.1| outer membrane protein [Fusobacterium sp. 7_1]
 gi|256027684|ref|ZP_05441518.1| Outer membrane protein [Fusobacterium sp. D11]
 gi|260494220|ref|ZP_05814351.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
 gi|289765644|ref|ZP_06525022.1| outer membrane protein [Fusobacterium sp. D11]
 gi|229431428|gb|EEO41640.1| outer membrane protein [Fusobacterium sp. 7_1]
 gi|260198366|gb|EEW95882.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
 gi|289717199|gb|EFD81211.1| outer membrane protein [Fusobacterium sp. D11]
          Length = 212

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  +++ + L G  A    +G         ++I++        F   S+         L
Sbjct: 74  DNQERELKAKLQGTQAQVKKEG-------NALVINL---PGGVTFASDSANISSGFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD +        N  LS  RA +  Q L+  GVS  RI  
Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSSRIIA 180

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++   +    NRR++I +   Q
Sbjct: 181 -NGFGSSNPIASNSTPDGRLQNRRVEIKILPAQ 212


>gi|167721446|ref|ZP_02404682.1| ompA family protein [Burkholderia pseudomallei DM98]
          Length = 243

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 96  EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 153 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 209

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 210 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 238


>gi|300870134|ref|YP_003785005.1| OmpA family outer membrane protein [Brachyspira pilosicoli 95/1000]
 gi|300687833|gb|ADK30504.1| outer membrane protein, OmpA family [Brachyspira pilosicoli
           95/1000]
          Length = 401

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + ++ +      + DN+   V+ +T   G++I +       +FD  S     +    +  
Sbjct: 260 ITEEENELNRKKIEDNLNDDVVVDTVPEGLVIRL----GEILFDTDSYTLKEDAKDTVDN 315

Query: 255 IGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I   +  +     I + GHTD +     A  N  LS  RA +    ++   +  D++   
Sbjct: 316 IINAIKQTYPDREIIVEGHTDNT---GEANYNQALSEKRAKTVADYILPK-LEHDKL-SY 370

Query: 313 SGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            GF       ++D       NRR+DI+++ R
Sbjct: 371 RGFGDKEPIASNDNPDGRQKNRRVDIIIKLR 401


>gi|71065432|ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4]
 gi|71038417|gb|AAZ18725.1| probable OmpA/MotB [Psychrobacter arcticus 273-4]
          Length = 211

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 29/170 (17%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
               ++++  L + I ++++   A N+      +       I++ D     +F + S+  
Sbjct: 48  QQSDRQKIATLLEDIQTSVATQGAGNL-----IDFNMEQSKITLKDN----VFARGSACI 98

Query: 245 LPETIVVL----QKIGEVLAHSTE-VISIRGHTDASPFR----------NIARDNWRLSL 289
            PE          KI   L  S+   I + GHTD  P             +  DN+ LS 
Sbjct: 99  TPEAKTAFNNIEDKITSFLQQSSNAKIFVEGHTDNIPVSQPVTDYRRFCTVYDDNYTLSA 158

Query: 290 DRAYSAYQVLMKSGVSEDRISK---ISGFAHHRLKIASDPMNSANRRIDI 336
            RA  A ++L+  G  +  I+K   ++G+   +      P + ANRR+++
Sbjct: 159 ARAREARKLLV--GQLDTSIAKRIVVAGYGDSQPIKGISPEDDANRRVEV 206


>gi|152970821|ref|YP_001335930.1| hypothetical protein KPN_02274 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955670|gb|ABR77700.1| putative exported protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 565

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257
           + + ++        + V+ +  +    I +    +  +FD   S   P +  +L   +  
Sbjct: 401 VEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLLVNSLLG 457

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           + A    +I + GHTD+       R N +LSL RA +    +  +G   +    + G+  
Sbjct: 458 IKAKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGA 514

Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342
            R   +++     + NRR++I +  ++
Sbjct: 515 SRPVASNETPEGRAQNRRVEISLVPQK 541


>gi|329915272|ref|ZP_08276241.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544948|gb|EGF30290.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 212

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 16/165 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            LS      + +++  +     +   L+  +A           T     I I       +
Sbjct: 42  ELSSSLQDEIAKRQAEEQRRMTLEKALAIPLATG-------RITLNNGRIGIS---GQVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
           F  +S    PE   +L  + + L        E++ + G TD    R     DNW LS  R
Sbjct: 92  FGLNSDQLQPEGRQLLTTLVKPLQAYLTTRDELLMVSGFTDDISIRGGRFADNWELSAQR 151

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRID 335
           A +  + L+  G+    +   +  A   +     D   + NRR++
Sbjct: 152 ALTVTRALIDEGMPSAMVFAAAFGAEQPVSPNTDDAARAQNRRVE 196


>gi|330820825|ref|YP_004349687.1| OmpA/MotB [Burkholderia gladioli BSR3]
 gi|327372820|gb|AEA64175.1| OmpA/MotB [Burkholderia gladioli BSR3]
          Length = 228

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232
            +  E    +  + R + +  +   TL   +A  +  G           ++++D R    
Sbjct: 39  GMQLEASSRLADEVRQRQVETQRRKTLEQALAGPLAAG----------RVTLVDGRIGIA 88

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNW 285
              +F  +S    PE   +L+ +   L        +++ + G  D    R   R   DNW
Sbjct: 89  GNVLFAVNSDQLQPEGRDLLRSLAGPLTAYLHDRDQILMVSGFADDQLVRAGNRRFADNW 148

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            LS +RA +  +  + SGV    +   + F   +     A +   + NRR++I    R
Sbjct: 149 ELSAERALTVTRAFIDSGVPAASVFAAA-FGSEQPVSSNADEAGRARNRRVEIAAVPR 205


>gi|284035678|ref|YP_003385608.1| V-type H(+)-translocating pyrophosphatase [Spirosoma linguale DSM
           74]
 gi|283814971|gb|ADB36809.1| V-type H(+)-translocating pyrophosphatase [Spirosoma linguale DSM
           74]
          Length = 890

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 19/204 (9%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               +   R+    +      DLEKS   E       + K K         L  + K   
Sbjct: 703 STTASEGNREGITAQGGMHGVDLEKSTAAENVTVTENVLKFKNDKTGVDLNLSGVGKIEE 762

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +  + +D  V    +               +   F+   +   PE+ V L  + ++L 
Sbjct: 763 QLIEFINSDKAVDKETWF------------DFDRLTFETGKATLKPESQVQLGNVAQILK 810

Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
               V + + G+TD +     A  N +LS +RA S    L K G+ + R+    G+    
Sbjct: 811 AYPNVNVKVGGYTDNT---GNANANLKLSGERASSVEAELEKLGIDKSRLEA-EGYGQEH 866

Query: 320 LKIASDPM--NSANRRIDILVEDR 341
              ++D     + NRRI + V  +
Sbjct: 867 PVASNDTEEGRAQNRRISMRVTKK 890


>gi|641920|gb|AAA85840.1| protein F precursor [Pseudomonas fluorescens]
          Length = 317

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|190572988|ref|YP_001970833.1| putative outer membrane protein [Stenotrophomonas maltophilia
           K279a]
 gi|190010910|emb|CAQ44519.1| putative outer membrane protein [Stenotrophomonas maltophilia
           K279a]
          Length = 366

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 257 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 313

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 314 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 366


>gi|167826034|ref|ZP_02457505.1| ompA family protein [Burkholderia pseudomallei 9]
          Length = 247

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 100 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 157 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 213

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 214 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 242


>gi|119899491|ref|YP_934704.1| lipoprotein attached to the membrane by a lipid anchor [Azoarcus
           sp. BH72]
 gi|119671904|emb|CAL95818.1| lipoprotein attached to the membrane by a lipid anchor [Azoarcus
           sp. BH72]
          Length = 193

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
            N+       P + EK  A   K     L K++S  L G+    +      E T  GI +
Sbjct: 28  ANRPSEGGSTPPAAEKRAASTAKIDWAALQKELSGALRGVQDAEVG-----EATADGIHL 82

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
            I        F    S P P    VL  +   LA    V I + GHTD          N 
Sbjct: 83  RIPVSNG---FASGGSEPRPALTKVLDSLVAPLAARPGVGIKVIGHTDGL---GSEMYNL 136

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +LS+ RA +  + L   G++ DR+S   G         +  +   + NRR++I++
Sbjct: 137 KLSIQRAEAVMEYLRSRGIAFDRLSA-DGKGETEPIADNAKEATRARNRRVEIVL 190


>gi|94309565|ref|YP_582775.1| OmpA/MotB [Cupriavidus metallidurans CH34]
 gi|93353417|gb|ABF07506.1| putative OmpA/MotB (family of outer membrane porins precursor)
           [Cupriavidus metallidurans CH34]
          Length = 572

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           I+  +  +F   S++    +  VL    E++    +  + + GHTD+      +R N +L
Sbjct: 440 IELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLVAGHTDSV---GDSRANLKL 496

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           S  RA S    L  +         I G+   R K  ++P    +ANRR++I +  
Sbjct: 497 SEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRAANRRVEITLVP 551


>gi|332886090|gb|EGK06334.1| hypothetical protein HMPREF9456_00208 [Dysgonomonas mossii DSM
           22836]
          Length = 295

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 92/243 (37%), Gaps = 20/243 (8%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           +  +       ++ S  ++    R  N     + ++       SL ++++   ++ K  D
Sbjct: 48  ESQLQLAESRTRVASLEERLAEARKNNEDLRAAYAEMQGLLNKSLLQNTQGNVNITKLVD 107

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
              S N+   + +           + K R   L   + + L+  +  + ++ +  +  + 
Sbjct: 108 EINSSNRFIQHLV-----------QAKNRSDSLNIVMINNLTRSLTRDEMQDLDIKVLKG 156

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281
            + IS+ D     ++         +   +L KI +++       + + G+TD  P     
Sbjct: 157 VVYISLDD---RMLYRSGGYEISTKAGEILSKIAKIIMDYKDYSVLVEGNTDTDPISRPN 213

Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            R+NW LS  RA S  Q L  + GV   R++  +G   +     +      + NRR  I+
Sbjct: 214 IRNNWDLSALRASSVVQALQNNYGVDPKRLTA-AGRGEYNPIATNSTAEGKALNRRTQII 272

Query: 338 VED 340
           +  
Sbjct: 273 ITP 275


>gi|115372711|ref|ZP_01460017.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1]
 gi|310823482|ref|YP_003955840.1| thrombospondin type 3 repeat protein, outer membrane
            domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|115370192|gb|EAU69121.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1]
 gi|309396554|gb|ADO74013.1| Thrombospondin type 3 repeat protein, outer membrane domain protein
            [Stigmatella aurantiaca DW4/3-1]
          Length = 5149

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 27/282 (9%)

Query: 70   NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
             P  K ++           P        +D   DE    +  +   G  +   +      
Sbjct: 4869 KPEEKPVVEPVAVPQQAPAPVCPQGPEDMDGFQDEDGCADPDNDGDGILDASDKCPNAPE 4928

Query: 130  NIFYL------SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
                        +        ++         D C +   +K   ++E+    P + +  
Sbjct: 4929 TKNGFQDEDGCPDEAPPPPPVDTDGDGLTDDVDRCPNEPEDKDGFRDEDGCPDPDNDQDG 4988

Query: 184  LAMKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILISIIDQRNTPMFDKS 240
            +A    K           T++G+  ++       V     R  I+I      +   F   
Sbjct: 4989 IADASDKCPNQ-----PETINGVTDEDGCPDKGKVKVLVEREKIVIL-----DKIFFTSK 5038

Query: 241  SSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
              + LP++  +L+++ +VL    E   + + G+TD         +N RLS  RA +  + 
Sbjct: 5039 MDVILPKSFSLLKQVAQVLKAHPEIEKVRVEGYTDDQ---GPDEENLRLSERRAKAVLER 5095

Query: 299  LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            L++ GV+ +R+  + GF   R   ++       ANRR++  V
Sbjct: 5096 LVQEGVAAERLDSV-GFGEARPVASNKTSKGRDANRRVEFSV 5136


>gi|325278144|ref|ZP_08143653.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51]
 gi|324096719|gb|EGB95056.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51]
          Length = 263

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  Q+       T+D++   +      +++   K+      
Sbjct: 21  SHDPNANLEAARTNFSALQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEGELKNAAAQRAQAKLDARDAQIAKLQNSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSASYNQS 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI    G+         +S+   + NRR+++ + +
Sbjct: 194 LSERRANSVRMALVRAGVDPARIVA-QGYGKEYPVADNSSNSGRAQNRRVEVTISN 248


>gi|307825940|ref|ZP_07656155.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307733059|gb|EFO03921.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 288

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                   ++G   E  RT      +   +   F   S+   P+    L  + +VL    
Sbjct: 79  QQEEMQQSLQGTGIEVQRTAENTLNLTMPSNVTFAFDSATLTPQAQGALDSVAKVLNQYP 138

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  I++ GHTD          N  LS  RA S    L + GV+  R+++  G      K+
Sbjct: 139 DSTINVTGHTDDV---GSDSYNQVLSERRAASVSSYLAQHGVTPSRLTQ-QGMGEKMPKV 194

Query: 323 A--SDPMNSANRRIDI-LVEDRQG 343
              ++     NRR+++ +V ++  
Sbjct: 195 PNVNEANRGQNRRVELAIVANKNA 218


>gi|148549426|ref|YP_001269528.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148513484|gb|ABQ80344.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 263

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 18/235 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  Q+       T+D++   +      +++   K+      
Sbjct: 21  SHDPNANLESARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEAELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSSAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI S+  G  +     +S+   + NRR+++ + +
Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248


>gi|108757918|ref|YP_632429.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108461798|gb|ABF86983.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 620

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 16/243 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D+   E  T NS   + G  +    +Q                     +  D +   D  
Sbjct: 372 DVCPTEPETFNSFQDEDGCPDDPNAHQPPTEAGQPAPAPAPLALPPAPVDTDKDGVVDSE 431

Query: 159 K--STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
               T+ E     E+    P    ++      + +    A+ I+        D       
Sbjct: 432 DLCQTEPEDLDGFEDEDGCPDPDNDQDGIPDAEDQCPLEAETINGVQD---DDGCPDKGK 488

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDA 274
            +    G  I I+D      F     + L  +  +L+++   L  +  +  + + GHTD 
Sbjct: 489 AQVRVEGARIVILD---KVYFGTGQDVILARSHGLLRQVAATLKANPRILMVRVEGHTDD 545

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                    N  LS  RA +    L+K G++  R+  + G+   +    ++       NR
Sbjct: 546 Q---GNDMKNLDLSQRRARNVVAFLVKEGIAAQRLDAV-GYGEAKPVDTNETAKGRENNR 601

Query: 333 RID 335
           R++
Sbjct: 602 RVE 604


>gi|108759418|ref|YP_635012.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108463298|gb|ABF88483.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 543

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFR 278
           R G  I I++Q N   F     I L E+  +L+++  V+  +T  + + + GHTD+   R
Sbjct: 386 RDGNRIVILEQLN---FATDQDIILSESFPILEEVARVMNENTEADRVHVEGHTDS---R 439

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
                N  LS  RA S  + L++SGV+ +R+    GF   R     A++   + NRR+D 
Sbjct: 440 ASDAYNLDLSRRRAASVMRFLVESGVAAERLCS-QGFGRSRPLADNATEEGMALNRRVDF 498

Query: 337 LVED 340
            ++ 
Sbjct: 499 TIQP 502


>gi|296533201|ref|ZP_06895824.1| type VI secretion system OmpA/MotB family protein [Roseomonas
           cervicalis ATCC 49957]
 gi|296266471|gb|EFH12473.1| type VI secretion system OmpA/MotB family protein [Roseomonas
           cervicalis ATCC 49957]
          Length = 162

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA ++   L+  +A  +V  V  +  RT + I       + M+   S+      + +L +
Sbjct: 15  LAARLREFLAPEIAQGLV-TVTGDVQRTMVRIQ-----GSGMYASGSATLNERFVPLLTR 68

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311
           IGE +         I GH+D  P R +    N+ LS  RA +A +V+ ++ G+   R  +
Sbjct: 69  IGEAVREEDAGRTDILGHSDNQPIRTLRFPSNFHLSQARAEAALEVIRRASGLEAARF-Q 127

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             G         +       ANRRI+++V +R+
Sbjct: 128 AEGRGDAEPVADNRTAEGREANRRIEVVVLNRR 160


>gi|153006608|ref|YP_001380933.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030181|gb|ABS27949.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 440

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 10/251 (3%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P +R      D   D     + V  K  +   +              +        +S  
Sbjct: 189 PEDRDGFQDEDGCPDADNDGDGVVDKADACPLEPGAVEARGCPVKDRDGDGVSDPADSCP 248

Query: 149 RDSE-KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
             +  K    C  +D +   + E+       +KE             LA +I    +   
Sbjct: 249 DVAGIKALAGCPDSDSDGIPDAEDKCPQQAGTKENGGCPDADTDGDALADRIDKCPTQF- 307

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
                 G   + T   +    ID +    F  +    LP++  +L ++ +VL       I
Sbjct: 308 -GPRPDGCPKKYTLVQVRREKIDIKQQVHFATAKFRVLPDSFPLLNQVVQVLRDFPNMQI 366

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           SI GHTD+         N RLS  RA +    L+  GVS +R+  I GF   +   ++  
Sbjct: 367 SIEGHTDSV---GGEALNMRLSQQRAEAVLDYLISKGVSPERLEAI-GFGPTKPIASNKT 422

Query: 327 --MNSANRRID 335
               + NRR +
Sbjct: 423 ASGRARNRRTE 433


>gi|146276251|ref|YP_001166410.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554492|gb|ABP69105.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 228

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 +             +     G  L        S NK E   +   +   IL   
Sbjct: 26  SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
               L   A  + +++           V    T + +++++       +F   S+   P+
Sbjct: 85  VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L  + + L       I + GHTD++     A  N  LS+ RA S   VL+ +GV  
Sbjct: 135 LQRDLAAVAQNLLRYPNSTIMVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPS 191

Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            R++ + G    +   ++      + NRR+DI++  
Sbjct: 192 YRVASL-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226


>gi|167912756|ref|ZP_02499847.1| ompA family protein [Burkholderia pseudomallei 112]
          Length = 248

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+   P+ 
Sbjct: 101 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 157

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++   LA  +   + I GHTD          N  LS  RA +    L+  G++  
Sbjct: 158 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 214

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335
           +++  +G    +    +D     + NRRI+
Sbjct: 215 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 243


>gi|152983975|ref|YP_001346830.1| outer membrane protein [Pseudomonas aeruginosa PA7]
 gi|150959133|gb|ABR81158.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
          Length = 261

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 90/237 (37%), Gaps = 13/237 (5%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
           T  + +L+   +N      + +        ++ +        +  + G+D      L   
Sbjct: 22  TPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
            N+        +      +  +    Q    ++ +  + L  D +   +  + T  G ++
Sbjct: 82  TNQRIELAKQTIVLRNAESQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           +  D     +FD   S   P  +  +Q++ E L  + E  + + G+TD++     A  N 
Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           RLS  RA S    L+  G+S +R+    G+       ++      + NRR+++ + +
Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248


>gi|110834388|ref|YP_693247.1| OmpA family protein [Alcanivorax borkumensis SK2]
 gi|110647499|emb|CAL16975.1| OmpA family protein [Alcanivorax borkumensis SK2]
          Length = 362

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +  +L ++ + L   T   + I GHTD+      A  N  LS  RA + 
Sbjct: 259 FELDSANITASSRPILDRLVKALKSQTNFDVEIAGHTDS---SGSAEYNEGLSDRRAKAV 315

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            Q L+  G+S +R++   G+       +++     + NRR++
Sbjct: 316 RQYLIDQGISSERLTA-RGYGEVVPVASNETASGRAMNRRVE 356


>gi|290508935|ref|ZP_06548306.1| OmpA domain-containing protein [Klebsiella sp. 1_1_55]
 gi|289778329|gb|EFD86326.1| OmpA domain-containing protein [Klebsiella sp. 1_1_55]
          Length = 565

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L   + + ++        + V+ +  +    I +    +  +FD   S   P +  +L
Sbjct: 395 MRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLL 451

Query: 253 -QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
              +  + A    +I + GHTD+       + N +LSL RA +    +  +G   +    
Sbjct: 452 VNSLLGIKAKPGWLIVVAGHTDSI---GNDKSNQQLSLKRAEAVRDWMRDTGDVPESCFA 508

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           + G+   R   +++     + NRR++I +  ++
Sbjct: 509 VQGYGASRPVASNETPDGRAQNRRVEISLVPQK 541


>gi|168260613|ref|ZP_02682586.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350258|gb|EDZ36889.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 220

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGADTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|294678012|ref|YP_003578627.1| OmpA family protein [Rhodobacter capsulatus SB 1003]
 gi|294476832|gb|ADE86220.1| OmpA family protein [Rhodobacter capsulatus SB 1003]
          Length = 224

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 17/218 (7%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                       S     ++   +  G  +        + +++            ++   
Sbjct: 21  TEPYSQGYTGSSSADPNANMRGGAITGALIGGVLGATSNGDEKLEKAAAGAIVGGLIGGA 80

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
              +L   A+++   L                 R G  + I+      +F   S+   P+
Sbjct: 81  IGNQLDKQAQELRRDLDTN---------GVSVVRQGNQL-IVTMPQDVLFAVDSAAVRPD 130

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L  +   L    +  + + GHTD+      A  N RLS DRA +  ++L+ +GV  
Sbjct: 131 LQRDLYTLSGSLNRYPDTTVDVVGHTDSD---GDAAYNQRLSQDRANAVARILIGAGVPS 187

Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
            R+    G    +   ++      + NRR++ ++   +
Sbjct: 188 YRVVA-YGRGEEQPVASNLSAAGKAQNRRVEFIIRPNR 224


>gi|110642959|ref|YP_670689.1| OmpA family membrane protein [Escherichia coli 536]
 gi|191171277|ref|ZP_03032827.1| OmpA domain protein [Escherichia coli F11]
 gi|300976455|ref|ZP_07173440.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|110344551|gb|ABG70788.1| putative OmpA-family membrane protein [Escherichia coli 536]
 gi|190908577|gb|EDV68166.1| OmpA domain protein [Escherichia coli F11]
 gi|300308536|gb|EFJ63056.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|324015357|gb|EGB84576.1| OmpA family protein [Escherichia coli MS 60-1]
          Length = 550

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|126724952|ref|ZP_01740795.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126706116|gb|EBA05206.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 218

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 14/207 (6%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              + + +N    ++  G  +         +  ++N  L  +    I A       Q L 
Sbjct: 21  DTAANNERNGPNANANVGAAIGGMLGGFVGLKSDDNKLLKGVVGAGIGAAIGGAIGQSLD 80

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++ +     L  D+            G  + ++      +FD  S          L K+ 
Sbjct: 81  RQAADLEKSLDNDD------VSIVNEGDRL-VVTLPQDILFDVDSDFVSSSLRGDLYKVA 133

Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L       I I GHTD       A  N  LS  RA S   +L+  GV+  R+    G 
Sbjct: 134 NNLNSYPNSTIQIIGHTDN---SGSAAHNQDLSARRAGSVSGILIDGGVAAGRVVS-FGR 189

Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340
              +    +      + NRR++I++  
Sbjct: 190 GEDQPVATNLTAEGRAENRRVEIIILP 216


>gi|124007750|ref|ZP_01692453.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123986872|gb|EAY26644.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 274

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     ++  +L  + + +    E  I + GHT           N RLS  RA + 
Sbjct: 168 FKLGSDELDEKSKALLDSVAQKMMEFPEAEIEVSGHTCNI---GTKAGNLRLSKKRAEAV 224

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
            + LM+  G+   RI K +G+A +R  +   ++P    NRR+
Sbjct: 225 RKYLMEYDGIDPKRI-KTAGYADNRPLVPNINEPNRKKNRRV 265


>gi|298372337|ref|ZP_06982327.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275241|gb|EFI16792.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 700

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P +  VL+ I +++ ++    + I GHTD+         N  LS  RA + 
Sbjct: 591 FDTGKATIKPVSRGVLKLIVDIMRNNPDYNLIIAGHTDSQ---GNDALNMTLSEKRAAAV 647

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            + L   G+ + R+    G+        +      + NRR++  V
Sbjct: 648 RKYLEDRGIDKRRLQS-KGYGETLPVATNKTAKGRAQNRRVEFTV 691


>gi|284037622|ref|YP_003387552.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283816915|gb|ADB38753.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 241

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD+SS +  PE+   L K+ + L    + VI I GHTD        R N  LS +R
Sbjct: 134 DNVYFDQSSYVLRPESYPQLNKLIKTLVTIPKLVIEIAGHTDNV---GDKRLNQALSENR 190

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           A      L+ +G+ E+R+ + +G+   +    +D       NRR++ +V 
Sbjct: 191 AKIITNYLVTNGIPENRL-RHNGYGSSKPAAPNDTEENKRKNRRVEFVVL 239


>gi|331658933|ref|ZP_08359875.1| OmpA family of outer membrane porins [Escherichia coli TA206]
 gi|331053515|gb|EGI25544.1| OmpA family of outer membrane porins [Escherichia coli TA206]
          Length = 550

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|34763092|ref|ZP_00144063.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887226|gb|EAA24326.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 202

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  +++ + L G  A               ++I++        F   S+         L
Sbjct: 64  DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANISSGFYSAL 113

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I + L +  E  I + G+TD +        N  LS  RA +  Q L+  GV+ +RI  
Sbjct: 114 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVASNRIVA 170

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +GF       ++        NRR++I +   Q
Sbjct: 171 -NGFGSSNPVASNSTQEGRLQNRRVEIKILPAQ 202


>gi|113868899|ref|YP_727388.1| outer membrane protein peptidoglycan-associated(lipo)proteins
           [Ralstonia eutropha H16]
 gi|113527675|emb|CAJ94020.1| outer membrane protein peptidoglycan-associated(lipo)proteins
           [Ralstonia eutropha H16]
          Length = 212

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 205 GLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HS 262
            L  D    G        G + ++I    +   FD  S+   P    VL ++ + L  H 
Sbjct: 77  KLNKDTAGTGTQITEQPDGTLKVNI---PSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQ 133

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
               ++ GHTD++        N +LS  RA S    L   GV+ +R++   G    +   
Sbjct: 134 DVSANVVGHTDST---GNPNYNMQLSQRRAQSVAGYLGDRGVARNRLTA-EGRGQSQPVA 189

Query: 323 AS--DPMNSANRRIDILVEDRQG 343
            +  +   + NRR++I ++  QG
Sbjct: 190 DNGTEAGRAQNRRVEIFLKPIQG 212


>gi|288942206|ref|YP_003444446.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288897578|gb|ADC63414.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 225

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +++  +     L+  +A  +++       +      ++       F+  S    P     
Sbjct: 79  MEEQQRDFERQLAPEIASGVIRVQKLPDHQ-----LLVGMTGATAFEVDSDRIQPGFYST 133

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+KI  ++    +  +++ GHTD++     A  N  LS  RA S    L +SGV   RI 
Sbjct: 134 LEKISAIVRKYGKTQLAVSGHTDST---GAAAYNQTLSERRAASVGYYLERSGVLPQRIY 190

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             +G+  ++   ++   +    NRR+DIL+  
Sbjct: 191 S-AGYGMNQPIASNATEDGRRLNRRVDILIMP 221


>gi|78221730|ref|YP_383477.1| surface antigen protein [Geobacter metallireducens GS-15]
 gi|78192985|gb|ABB30752.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Geobacter
           metallireducens GS-15]
          Length = 218

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 12/205 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              +         G        L ++I +     L   +   +        + +   K  
Sbjct: 22  PMTRTQTGAALGTGVGAAVGAGLGQAIGRNTESTLIGAAAGALAGGLTGGAIGNYMDKQE 81

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +   VA+  V+G   +  +  + ++    ++  +F  +S++  P     + ++ +VL 
Sbjct: 82  QAMRQAVAN--VEGASIQRDQNVLAVTF---KSDILFPINSAVLQPGANDEITRVAQVLT 136

Query: 261 HST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I GHTD++        N  LS  RA +    L   GV+  R++ I GF   +
Sbjct: 137 QYPATTITIAGHTDST---GSDALNQTLSERRATAVKNALAARGVAPARMNAI-GFGKSK 192

Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342
                +++   S NRR++I +  +Q
Sbjct: 193 PIADNSTEAGRSMNRRVEITIVPQQ 217


>gi|307545103|ref|YP_003897582.1| OmpA/MotB [Halomonas elongata DSM 2581]
 gi|307217127|emb|CBV42397.1| OmpA/MotB [Halomonas elongata DSM 2581]
          Length = 270

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+        VL  +   L  +    + I GHTD+      A+ N  LS  RA S 
Sbjct: 168 FEFDSAQLTMGAESVLTDVASKLRANENVRVRIEGHTDSV---GPAQYNKDLSQRRADSV 224

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L   G++ +R++ I G+   +   ++D     + NRR+++
Sbjct: 225 ASFLASQGIAANRMTTI-GYGEEQPVASNDTKAGRAENRRVEL 266


>gi|114707989|ref|ZP_01440881.1| OmpA family protein [Fulvimarina pelagi HTCC2506]
 gi|114536618|gb|EAU39750.1| OmpA family protein [Fulvimarina pelagi HTCC2506]
          Length = 221

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268
             ++G     TR G  I I++  +   F    S  LP     L  +  VL    E I ++
Sbjct: 89  QQLQGTGVSVTRVGDRI-ILNMPSNVTFPSDQSQILPGFYPTLDSVAIVLQKFDETIVNV 147

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GHTD+         N  LS  RA S  Q L   GV+ +R++   G+   +     +++ 
Sbjct: 148 YGHTDSQ---GGDGYNLSLSQQRASSVSQFLASRGVNPNRLN-TQGYGESQPIADNSTEA 203

Query: 327 MNSANRRIDILV 338
             + NRR+++ +
Sbjct: 204 GRARNRRVEVQI 215


>gi|126662605|ref|ZP_01733604.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
 gi|126625984|gb|EAZ96673.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
          Length = 467

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 92/261 (35%), Gaps = 25/261 (9%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+ + +  P+       D          + +L     N        E+       ++  
Sbjct: 227 AGLPEFKGCPDTDKDGIQDSEDACPEEAGTKELNGCPDNDGDGIINSEDACPEEKGTKMM 286

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C ++         D C +         ++N   P    +      +  +   +A  ++
Sbjct: 287 NGCPDADGDGVADKDDNCPTV-----AGAKDNAGCPWPDTDGDGVADKDDKCPTVAGTVA 341

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           +     V+D+ +K              + D   T +F+   +    +TI VLQ +  +L 
Sbjct: 342 NNGCPEVSDDTMKK-------------LNDYGKTILFNSGKASFQKQTIPVLQAMTAILK 388

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                  S+ GHTD++        N +LS +RA +    L+++G+   R+S   GF    
Sbjct: 389 EYPTAKFSLEGHTDST---GADALNQKLSEERAAAVKNFLVENGIDASRLSS-KGFGESM 444

Query: 320 LKIASDP--MNSANRRIDILV 338
              ++      + NRR+++ +
Sbjct: 445 PVDSNKTAKGKANNRRVEVKL 465


>gi|117621166|ref|YP_856420.1| OmpA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562573|gb|ABK39521.1| OmpA family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 162

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           GL A+ I  +K   F  T  G  +   D  N  +F  ++    P+T VV++K+G+ L   
Sbjct: 28  GLTAEQIAVLKEQGFRLTDEGWTL---DFSNRVLFANNADALTPKTRVVVEKLGKTLQEV 84

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
                 I GHTD++     A  N +LS  RA S   VL+  G+ +  +  I G       
Sbjct: 85  GLNRARIDGHTDSN---GAADYNDQLSYKRAQSVADVLVSVGMPQANLD-IRGRGERDPI 140

Query: 322 --IASDPMNSANRRIDILVED 340
               +    + NRR+ I++ +
Sbjct: 141 ADNKTAAGRAENRRVAIVISN 161


>gi|327397929|gb|AEA73286.1| MopB [Stenotrophomonas maltophilia]
          Length = 363

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 254 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 310

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 311 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 363


>gi|262375753|ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145]
 gi|262309356|gb|EEY90487.1| OmpA/MotB [Acinetobacter lwoffii SH145]
          Length = 215

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 27/188 (14%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S+ ++    L    + +     ++KR+ ++   + +++    A N+   + F+       
Sbjct: 29  SVLQKTYAELRHKQELEQGGAAQQKRISEMLTDLKNSVDETGASNL---ISFDIADG--K 83

Query: 226 ISIIDQRNTPMFDKSSSIPLPE----TIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-- 278
           I++ +     +F+  S+   P        + Q+I   L  + +  + + GHTD S  +  
Sbjct: 84  ITLKEN----IFNVGSACITPSAAKTFKSLDQRIVSFLKENPKASVFVEGHTDNSIVKQP 139

Query: 279 --------NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN 328
                    +  DN+ LS  RA  A ++++ S +  +  +++   G+   R     DP +
Sbjct: 140 VLDFKEKCTVYDDNFTLSAARAREARKLIISS-LDANEANRVVVAGYGDSRPLNGIDPSD 198

Query: 329 SANRRIDI 336
             NRR++I
Sbjct: 199 GRNRRVEI 206


>gi|254428815|ref|ZP_05042522.1| OmpA family protein [Alcanivorax sp. DG881]
 gi|196194984|gb|EDX89943.1| OmpA family protein [Alcanivorax sp. DG881]
          Length = 356

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+     +  ++ ++ + L   T   + I GHTD++     A  N  LS +RA + 
Sbjct: 253 FELNSAKLTATSRPLVDRLVKALKSQTNFDVEIAGHTDST---GSAEYNETLSDERAKAV 309

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            Q L+ +GV+ +R++   G+       +++     + NRR++
Sbjct: 310 RQYLIDNGVAAERLTA-RGYGEVVPVASNETSSGRAMNRRVE 350


>gi|108759406|ref|YP_634375.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108463286|gb|ABF88471.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 538

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S         L  I + L  +  V + I GHTD +        N  LS DRA + 
Sbjct: 433 FPVGQSTLSDSERRNLDAIADYLKANPGVSLRIEGHTDNT---GPEELNRTLSQDRADAV 489

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            Q L++ G+   R++   G+   +   ++D     SANRR++ +
Sbjct: 490 RQYLIQQGIESSRLTA-KGYGPAQPIASNDTPEGRSANRRVEFV 532


>gi|4580974|gb|AAD24561.1|AF117969_1 OprF [Pseudomonas fluorescens]
          Length = 326

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|222034509|emb|CAP77251.1| hypothetical protein LF82_430 [Escherichia coli LF82]
 gi|312947346|gb|ADR28173.1| hypothetical protein NRG857_13805 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 550

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|331004882|ref|ZP_08328299.1| OmpA/MotB [gamma proteobacterium IMCC1989]
 gi|330421336|gb|EGG95585.1| OmpA/MotB [gamma proteobacterium IMCC1989]
          Length = 232

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
               E    ++ +   + + ++    L   ++D +  G     T     I I       +
Sbjct: 37  GFQLELSQNLEEETAKRKMEEQRRMALEQALSDPLATG---RVTLRDGRIGIS---GNVL 90

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289
           F  +SS        +L  +   L        +++ + G TD  P +       DNW LS 
Sbjct: 91  FANNSSTLQENGRELLNTLVAPLKIYLSEREQLLMVSGFTDDKPIQTGNLNFSDNWDLSA 150

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
            RA +  + L++ G+    +   + F   +  + +      + NRR++
Sbjct: 151 QRALTVTRALIEEGMPSSMVFAAA-FGAQQPVVPNTDRASRAKNRRVE 197


>gi|26249224|ref|NP_755264.1| hypothetical protein c3389 [Escherichia coli CFT073]
 gi|227888360|ref|ZP_04006165.1| OmpA family membrane protein [Escherichia coli 83972]
 gi|301049415|ref|ZP_07196377.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|26109631|gb|AAN81834.1|AE016765_236 Hypothetical protein c3389 [Escherichia coli CFT073]
 gi|227834629|gb|EEJ45095.1| OmpA family membrane protein [Escherichia coli 83972]
 gi|300298792|gb|EFJ55177.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|307554790|gb|ADN47565.1| OmpA family protein [Escherichia coli ABU 83972]
          Length = 550

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|320158865|ref|YP_004191243.1| outer membrane protein A [Vibrio vulnificus MO6-24/O]
 gi|319934177|gb|ADV89040.1| outer membrane protein A precursor [Vibrio vulnificus MO6-24/O]
          Length = 357

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q N  +F   SS         L  + EVL    +    I GHTD++      + N R+S 
Sbjct: 238 QYNQELFATGSSKLSAGGKQALTPLAEVLIKYPDAEAEIVGHTDST---GSEKVNQRISE 294

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA +    L++ GV  +++ K+SG    +   ++      + NRR+++ +
Sbjct: 295 QRAQAVADYLVEQGVKAEQL-KVSGAGESQPIASNKTAEGRAQNRRVEVTI 344


>gi|13470497|ref|NP_102066.1| hypothetical protein mlr0220 [Mesorhizobium loti MAFF303099]
 gi|14021239|dbj|BAB47852.1| mlr0220 [Mesorhizobium loti MAFF303099]
          Length = 216

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270
           ++G     TR+G  I I++  +   F+       P    VL  +  VL       + + G
Sbjct: 88  LEGTGVSVTRSGDQI-ILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD++      + N+ LS  RA +    L   GV + R   ++GF   R   ++      
Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLSGQGVDQRRF-AVTGFGKTRPIASNATAAGR 202

Query: 331 --NRRIDI 336
             NRR++I
Sbjct: 203 EQNRRVEI 210


>gi|300980597|ref|ZP_07175094.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|300409214|gb|EFJ92752.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|315293784|gb|EFU53136.1| OmpA family protein [Escherichia coli MS 153-1]
          Length = 550

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|299137972|ref|ZP_07031152.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599902|gb|EFI56060.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 513

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 102/258 (39%), Gaps = 20/258 (7%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D QN     S    D  ++    + +V     +     + Q  E      ++ +Q++   
Sbjct: 259 DLQNADTMDSSKHRDQKMEITYAREAVQKAEDARISSLRKQASERQQQERADKEQAQADA 318

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI-LAMKRKKRLQDLAKKISSTL 203
                 +       ++    K+  + +       + E    A K +     + +K+ + L
Sbjct: 319 AQSQIAAANANAQAEAAAAAKARAEADAANARAQAAESQHNAQKSEADASAVREKLRAQL 378

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + ++A           +  G+++++ D     +FD +     P+T V L K+  +L    
Sbjct: 379 NSVLA--------TSESARGLIVNMSD----VLFDTAKFTLKPDTKVSLAKVATILQLYP 426

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + G+TD+         N +LS +RA + +  L+++GV    ++  +G+  ++   
Sbjct: 427 GLKVQVEGYTDSV---GGDEYNQKLSENRANAVHDFLVQNGVPAANVTA-AGYGKNKPVA 482

Query: 323 AS--DPMNSANRRIDILV 338
            +      + NRR++++V
Sbjct: 483 DNGTAAGRAQNRRVNLVV 500


>gi|347163|gb|AAA62423.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K GV+  R++ + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|146337865|ref|YP_001202913.1| hypothetical protein BRADO0750 [Bradyrhizobium sp. ORS278]
 gi|146190671|emb|CAL74675.1| hypothetical protein; putative Outer membrane protein containing
           OmpA/MotB domain [Bradyrhizobium sp. ORS278]
          Length = 429

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + +   PE+  +L K+  ++    +    I GHTD          N RLS  RA S
Sbjct: 323 LFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHTDNV---GGDDYNMRLSDARAAS 379

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
               L + GV+  R++   G+   R    +  D   + NRR++I+
Sbjct: 380 VRTWLTQHGVAAARLTS-HGYGKTRPVADNGTDQGRALNRRVEIV 423


>gi|86136455|ref|ZP_01055034.1| flagellar motor protein [Roseobacter sp. MED193]
 gi|85827329|gb|EAQ47525.1| flagellar motor protein [Roseobacter sp. MED193]
          Length = 791

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 17/290 (5%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           ++ +    N        A K     Q      +Q +  LS  + ++  +         Q 
Sbjct: 499 QQRLLAALNAQQDAEAGAEKDRSLAQERAALLAQAQAALSDQKTVSAEAQRETALLNQQV 558

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              +     +  + +  Q+      +   +                 +          + 
Sbjct: 559 AALREQLGGLQAILDDYQARDDAQQVQLQNLGQDLNSALARAASEERRRRLLEESERKRL 618

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDK 239
           +  A +   + + L  K +  L    ++   +      ++ G+ I        +  +F  
Sbjct: 619 EAEAAELASKAESLETK-AQDLERYRSEFFGRLRNLLGSQEGVRIEGDRFVFASEVLFAS 677

Query: 240 SSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI--ARDNWRLSL 289
            S+         + K+ ++L             +I + GHTD +         DNW LS 
Sbjct: 678 GSADLSRAGEGEVAKVAQILQSVAAEIPPELNWIIRVDGHTDNTAMAGSEKYSDNWELSQ 737

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            RA S  + ++++ G++ DR++  +GF   +     D     + NRRI++
Sbjct: 738 GRALSVVRFMIENLGIAPDRLAA-NGFGEFQPVNTDDTPEARAQNRRIEL 786


>gi|283786451|ref|YP_003366316.1| T6SS protein Cts1O [Citrobacter rodentium ICC168]
 gi|282949905|emb|CBG89530.1| T6SS protein Cts1O [Citrobacter rodentium ICC168]
          Length = 594

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           P+F   SS  +P++   L  I  V+  S E    I GH+D++     A  N  LS  RA 
Sbjct: 488 PLFANGSSNLMPDSEKTLLTIVPVIRRSPEKTFLIIGHSDST---GSAATNMALSAARAQ 544

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              + L+   G+   +     G    R    +D     + NRR++I+   R
Sbjct: 545 VIKEWLVAHTGLPAGQFI-TEGAGDTRPIANNDTKEGRAQNRRVEIIPLPR 594


>gi|326319363|ref|YP_004237035.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376199|gb|ADX48468.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 217

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + ++   +++     G         V+ +T    + +   D  +   F  + S   P   
Sbjct: 72  QHMERQKQEMQQVTQG------TGVVVTQTQDNQLKL---DIPSDISFATNRSDIQPNFA 122

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL +  E L ++    + I G+TD++   +I      LSLDRA S    L   GVS  R
Sbjct: 123 PVLDRFAEGLRNNPNAEVRIVGYTDSTGNDSINNP---LSLDRATSTRNYLTSRGVSGAR 179

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV--EDRQG 343
           I ++ G         +D     + NRR++I V    RQG
Sbjct: 180 I-QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG 217


>gi|229592015|ref|YP_002874134.1| putative outer membrane porin A protein [Pseudomonas fluorescens
           SBW25]
 gi|229363881|emb|CAY51363.1| putative outer membrane porin A protein [Pseudomonas fluorescens
           SBW25]
          Length = 326

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|260597724|ref|YP_003210295.1| hypothetical protein CTU_19320 [Cronobacter turicensis z3032]
 gi|260216901|emb|CBA30471.1| hypothetical protein CTU_19320 [Cronobacter turicensis z3032]
          Length = 520

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTE 264
           L     +   + + T    +   +   +  +FD       P  T V++  +  + A    
Sbjct: 363 LALQQAIDSYVSQPTPRDSIPHTVRLDSLSLFDTGQWRLKPGSTKVLVNALVGIKAKPGW 422

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           +I + GHTD        R N +LSL RA S    +  +G   +    + G+   R    +
Sbjct: 423 LIVVAGHTDDV---GDERANQQLSLKRAESVRDWMRDTGDVPESCFAVQGYGESRPAAPN 479

Query: 325 DPM--NSANRRIDILVEDR 341
                 + NRR++I +  +
Sbjct: 480 TTTQGRALNRRVEISLVPQ 498


>gi|332669308|ref|YP_004452316.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332338346|gb|AEE44929.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484]
          Length = 377

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           G  I +       +FD  S     +    L  + +VLA       + GHTD+    +   
Sbjct: 262 GTRIVL---DAAVLFDFGSHAVRADARATLDAVAQVLADVP-AARVEGHTDSV---SSDE 314

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRID 335
            N  LS  RA +    L + GVS     +  GF   R    ++            NRR++
Sbjct: 315 LNQALSERRADAVATALGERGVSAA--LETQGFGESRPVAPNEVDGVDNPAGRQLNRRVE 372

Query: 336 ILV 338
           I+V
Sbjct: 373 IVV 375


>gi|149913202|ref|ZP_01901736.1| OmpA family domain protein [Roseobacter sp. AzwK-3b]
 gi|149813608|gb|EDM73434.1| OmpA family domain protein [Roseobacter sp. AzwK-3b]
          Length = 222

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++  +  + L   + D+       + T TG  + I+      +FD  S+         L 
Sbjct: 80  NMLDRQEAQLRQQLDDD-----RVQITNTGDRL-IVTLPQDILFDVDSASVRSGLRDDLM 133

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +   L    +  + + GHTD +     A  N +LS  RA +   VLM  GV+  RI + 
Sbjct: 134 TVASSLRDYPDSTVQVVGHTDNT---GDAGYNQQLSERRANAVADVLMDGGVAFSRI-QT 189

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340
            G   ++    +  D   + NRR++I++  
Sbjct: 190 FGRGENQPVADNLTDAGRAQNRRVEIVILP 219


>gi|190895276|ref|YP_001985569.1| hypothetical protein RHECIAT_PC0000949 [Rhizobium etli CIAT 652]
 gi|190700937|gb|ACE95019.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652]
 gi|327193548|gb|EGE60440.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512]
          Length = 441

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--RNIARDNWRLSLD 290
           +F  +          ++  I  VL  +      I+I GHTD  P    N   +N RLS  
Sbjct: 329 LFQSARPELTKGFEPLVASIATVLKQNAELIGGITITGHTDNVPLQASNPLSNNQRLSEA 388

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           RA +   +L  SGV   ++    G A       +D     +ANRRI+IL++ R
Sbjct: 389 RAATIASLLAASGVPAGQLKS-QGRAATEPLAGNDSREGRAANRRIEILIQKR 440


>gi|110638825|ref|YP_679034.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281506|gb|ABG59692.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 320

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F+  S + +  +   L  + +VL ++    + I GHTD          N  LS  R
Sbjct: 214 DNLLFETGSDVIVSSSFQSLDDLAKVLRNNPLYNLYIEGHTDNV---GDDEANLDLSKRR 270

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           A S    L+  GV   R++   GF   R    +D       NRR+++ + 
Sbjct: 271 AISVKNYLVSKGVGAARLT-TDGFGEARPVDTNDTPEGRKKNRRVEMHIL 319


>gi|56415540|ref|YP_152615.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129797|gb|AAV79303.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 216

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 79  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 137

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 138 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 193

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 194 ASNSTAEGKAQNRRVEITLSPLQ 216


>gi|115375599|ref|ZP_01462856.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|310823174|ref|YP_003955532.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367375|gb|EAU66353.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|309396246|gb|ADO73705.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 468

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 225 LISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIA 281
            I I  Q N   F   S+     +++ +L+ I  VL      + + I GHTD+       
Sbjct: 354 RIEIKKQIN---FGTGSAKIVGAQSLAILKDIALVLVDMPIIKKVRIEGHTDSQ---GAD 407

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             N RLS  RA +    L+K G+   R+  + G+   +   ++      + NRR +  + 
Sbjct: 408 ASNLRLSQKRADAVMAQLIKLGIDPGRLEAV-GYGETKPIASNATKAGRAENRRTEFNIV 466

Query: 340 DR 341
           ++
Sbjct: 467 EQ 468


>gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1]
 gi|300076456|gb|ADJ65855.1| OmpA family protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            R+++  + +     G          + +T    + + I    +   FD   +   PE  
Sbjct: 74  NRMENQKRAMEEATQGTGVQ------VSQTADNRLKLEI---PSDISFDTGRADIKPEMR 124

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL +    L  +    ++I GHTD +        N  LSL RA      L   GV+ +R
Sbjct: 125 PVLDRFAATLVENPATTVTIVGHTDNT---GSDAINDPLSLQRASRTRDYLSSRGVAANR 181

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
              I G   H   +A+  D   + NRR++I V
Sbjct: 182 F-SIQGRGSHEPLVANTSDANRARNRRVEIFV 212


>gi|295675817|ref|YP_003604341.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295435660|gb|ADG14830.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 217

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272
           G    I +Q +  +         FD SS    P    VL ++ + L  + EV+ S+ GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTSSYAIKPTFAPVLDQLAQTLQQNPEVVASVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D +      + N  LS++RA S    L + G++  R+S  +G   ++    ++     +A
Sbjct: 145 DNT---GSLQYNQTLSVNRAQSVTGYLTQRGIAPQRLSA-TGMGPNQPIADNNTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|254436394|ref|ZP_05049900.1| Thrombospondin type 3 repeat family [Nitrosococcus oceani AFC27]
 gi|207088084|gb|EDZ65357.1| Thrombospondin type 3 repeat family [Nitrosococcus oceani AFC27]
          Length = 344

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P    +L K+ E +    +  I+I GHTD++     A  N RLS  RA +A
Sbjct: 240 FGFDSAKLSPNAHTILDKVVENMRTYPDLEITIAGHTDST---GNADYNQRLSQLRAEAA 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L   G+   R+  I G+   R   ++      + NRR+++
Sbjct: 297 MNYLASKGIDPSRMEAI-GYGEERPIASNSTKEGRAKNRRVEL 338


>gi|319783265|ref|YP_004142741.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169153|gb|ADV12691.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 216

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270
           ++G     TR+G  I I++  +   F+       P    VL  +  VL       + + G
Sbjct: 88  LEGTGVSVTRSGDQI-ILNMPSDITFNSDQDAVKPGFYQVLNSVALVLKKFKQTTVDVFG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++      + N+ LS  RA +    L   GV + R   ++GF   R   ++      
Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLSGQGVDQRRF-AVTGFGKTRPVASNATAEGR 202

Query: 329 SANRRIDI 336
           + NRR++I
Sbjct: 203 AQNRRVEI 210


>gi|167770207|ref|ZP_02442260.1| hypothetical protein ANACOL_01550 [Anaerotruncus colihominis DSM
           17241]
 gi|167667529|gb|EDS11659.1| hypothetical protein ANACOL_01550 [Anaerotruncus colihominis DSM
           17241]
          Length = 321

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 10/214 (4%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           ++++ E    + +   +  + +      ++           P   +K    +  +++   
Sbjct: 39  DAEKWEMIVKAFSNPGDDTQQVVIGNAQDQGDQLLTATGDMPPPGDKESLERTDQQMPAN 98

Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++   L    A   +   V        + I     +N   F   S+  L +   +L  
Sbjct: 99  FDELYEYLKSYAASQGMEDSVQISKGDGRVYIRF---QNNLFFAPDSAAILADAYPLLDF 155

Query: 255 IGEVLAHSTEVI---SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +G+ L    + I   +I GHT A P     +  +W LS +RA +    L      + +  
Sbjct: 156 LGDCLNAVDDEILLVNINGHTAAVPNGETYQVSDWMLSSERASNIAIYLDDKKDVDPKKL 215

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           +  G+  +     +D +     NRR+DI++   Q
Sbjct: 216 RPMGYGKNFPVADNDTIAGREENRRVDIVIISNQ 249



 Score = 37.6 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +KKKV     P + G+W   Y+D +T+L+ FF++++ +++ D +  + I + F+  G + 
Sbjct: 1   MKKKVR---PPEDTGTWMNTYSDLVTLLLTFFVLLYSMSSVDAEKWEMIVKAFSNPGDDT 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G   +Q     ++   +    D+   + +      + ++  +Y +       + +
Sbjct: 58  QQVVIGNAQDQGDQLLTATGDMPPPGDKESLERTDQQMPANFDELYEYLKSYAASQGMED 117

Query: 137 SQQSEHCKNSLTRDSEKG 154
           S Q       +    +  
Sbjct: 118 SVQISKGDGRVYIRFQNN 135


>gi|288550313|ref|ZP_05969946.2| membrane protein OmpA-family [Enterobacter cancerogenus ATCC 35316]
 gi|288315417|gb|EFC54355.1| membrane protein OmpA-family [Enterobacter cancerogenus ATCC 35316]
          Length = 563

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257
           + + ++        + ++ +  +    I +    +  +FD       P +  +L   +  
Sbjct: 398 VEAAINDWTPPPPPRPIIKQIVQGPQTIRL---DSMSLFDTGRWALKPGSTKLLVNSLVG 454

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           + A    +I + GHTD++      + N  LSL RA S    +  +G   +    + G+  
Sbjct: 455 IKAKPGWLIVVAGHTDST---GDDKSNQVLSLKRAESVRDWMRDTGDVPESCFAVQGYGE 511

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
            R    +D     + NRR++I +  +
Sbjct: 512 SRPVATNDTPEGRALNRRVEISLVPQ 537


>gi|167990874|ref|ZP_02571973.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205330659|gb|EDZ17423.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
          Length = 220

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|120437695|ref|YP_863381.1| thrombospondin repeat-containing OmpA/MotB family outer membrane
           protein [Gramella forsetii KT0803]
 gi|117579845|emb|CAL68314.1| OmpA/MotB family outer membrane protein containing thrombospondin 3
           repeats [Gramella forsetii KT0803]
          Length = 472

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIAR 282
           ++  + +   T +FD + +   PE+   LQ I +++   +  I  I GHTD+        
Sbjct: 345 VISELNEYSKTVLFDLNKATIRPESEEALQSIHDIMHEYSTTIFHIEGHTDS---SGSDS 401

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            N +LS +RA S    L ++G+   R++   G+   +    +        NRR++I ++ 
Sbjct: 402 YNMKLSKERAASVATWLEQNGIPAKRLTS-EGYGETQPIATNSTAKGRQDNRRVEISLDK 460

Query: 341 RQ 342
            +
Sbjct: 461 DK 462


>gi|15964027|ref|NP_384380.1| hypothetical protein SMc00354 [Sinorhizobium meliloti 1021]
 gi|15073203|emb|CAC41711.1| Probable porin [Sinorhizobium meliloti 1021]
          Length = 221

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   F       +P     L  +  VL    +  I + G
Sbjct: 91  LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFNKTLIDVDG 149

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD++     A  N  LS  RA S    L   GV + R+S + G+   R   ++      
Sbjct: 150 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGLERPIASNATEVGR 205

Query: 329 SANRRIDILVED-RQG 343
           + NRR++I +   +QG
Sbjct: 206 AQNRRVEISIAPIKQG 221


>gi|115378368|ref|ZP_01465532.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364644|gb|EAU63715.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 494

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279
            G  I I++  N   F     I L E+  +L+++ ++L    E   + + GHTD+   R+
Sbjct: 343 QGNKILILEPIN---FATDQDILLSESWPILEEVSQMLKTHPEIKRLLVEGHTDS---RS 396

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
               N  LS  RA S    L +SGV  +R+    GF   R      ++   + NRR++  
Sbjct: 397 SDEYNLELSRRRAASIRVYLEESGVESERLCS-QGFGRSRPVADNKNEEGMALNRRVEFT 455

Query: 338 VEDRQG 343
           V     
Sbjct: 456 VLPPPA 461


>gi|327405440|ref|YP_004346278.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320948|gb|AEA45440.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 367

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +       V D+I +      T   + +  +   +   F+   SI LP     L+     
Sbjct: 227 LEENKKPPVQDSIHEKANTVDTSINLTVGDVYVLHNLQFESGKSILLPNEYPELENFIRH 286

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +       + + GHTD         DN  LSL+RA +  Q L+  G+++++I  I G   
Sbjct: 287 VEKYPNQTLLVTGHTDNV---GNKGDNKMLSLERANAIKQYLVAKGINKNKIV-IEGKGD 342

Query: 318 HRLKIASDPMNSA--NRRIDILV 338
                +++       NRR++I +
Sbjct: 343 EIPLDSNETEEGRKKNRRVEISI 365


>gi|317060136|ref|ZP_07924621.1| outer membrane protein [Fusobacterium sp. D12]
 gi|313685812|gb|EFS22647.1| outer membrane protein [Fusobacterium sp. D12]
          Length = 193

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    +  R G  IS+        F   S+         L  I +VL    E  I ++G
Sbjct: 64  LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 122

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++      + N  LS  RA S  Q L+  GV+ +R++   GF  +     +      
Sbjct: 123 HTDST---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLTS-QGFGPNNPVADNSTPEGR 178

Query: 329 SANRRIDILVEDR 341
             NRR++I +  +
Sbjct: 179 QMNRRVEIKIAPK 191


>gi|182678181|ref|YP_001832327.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634064|gb|ACB94838.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 459

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+ + +     +  +L +I   + H  E  I I GHTD++        N  LS  RA +
Sbjct: 357 LFETNGATISKSSEGLLDRIVTTIGHCPEATIEISGHTDST---GNEPFNLALSERRAKA 413

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
            +  L+ +G+  D++S  +G+   R   ++D     + NRRI+  V+
Sbjct: 414 VFDYLVAAGIPADKLSA-TGYGSSRPVASNDTEEGRAKNRRIEFTVK 459


>gi|225849650|ref|YP_002729884.1| OmpA family protein [Persephonella marina EX-H1]
 gi|225646341|gb|ACO04527.1| OmpA family protein [Persephonella marina EX-H1]
          Length = 235

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 13/153 (8%)

Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L K I+  +   +   +       E     I++ +    N  +F   S+    ++   L+
Sbjct: 72  LQKDIALEIKNRIKRILPMHAYQIEAIENYIVVRLF---NDVIFKPDSAELTEKSKKALR 128

Query: 254 KIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            +   L    +    + I GH   +       D W+LS+ RA    Q L++ GV+ ++I 
Sbjct: 129 GVANALKALDKAYSEVLINGH---AYVVTKGIDPWKLSIKRAVVVAQYLIEHGVNPEKI- 184

Query: 311 KISGFAHHRLKIA-SDPMN-SANRRIDILVEDR 341
            ++G+ + +     + P+    N R++I ++ +
Sbjct: 185 AVTGYGNTKPVYTWNHPLLKRRNDRVEIFIKLK 217



 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 60/144 (41%), Gaps = 4/144 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   +     + +W I ++D M++L+ FF++++ ++  D         YF      +
Sbjct: 1   MARKKKEECPS--VPAWIISFSDLMSLLLTFFILLYSMSVLDIKKLMKFLWYFQGEEAFV 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T +  +    +  ++    +I   I   +  ++   +I +       +   + IF   +
Sbjct: 59  ATKTVTVIPPISLLQKDIALEIKNRIKRILPMHA--YQIEAIENYIVVRLFNDVIFKPDS 116

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKS 160
           ++ +E  K +L   +   K L K+
Sbjct: 117 AELTEKSKKALRGVANALKALDKA 140


>gi|197364467|ref|YP_002144104.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095944|emb|CAR61525.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 205

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 68  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 126

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 127 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 182

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 183 ASNSTAEGKAQNRRVEITLSPLQ 205


>gi|307727734|ref|YP_003910947.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307588259|gb|ADN61656.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 321

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 10/154 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++ + + Q LA  +++ L+      I  G+    +  G+L   +  R    F+  S+  
Sbjct: 170 EVRNESQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 226

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
             +   +L ++   +   T   ++I GHTD          N  LS  RA +    L+  G
Sbjct: 227 TAQGRAILDQMAAAMQKMTTRTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKG 283

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           +   +++  +G    +    +D     + NRRI+
Sbjct: 284 IPPQQMT-TTGVGPDQPIATNDTADGRARNRRIE 316


>gi|298530631|ref|ZP_07018033.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510005|gb|EFI33909.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 274

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 17/154 (11%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L  L+ D+  K + F   R    + I       +++   +    E I VL K+  VL 
Sbjct: 93  KQLMPLLWDDKRKDLNFLEKRF---VQIFSINTELLYEPGETELSSEGIEVLDKVVPVLK 149

Query: 261 HSTEVISIRGHTD-----------ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
                + + GHT            A     I    WRLSLDRA + Y+ +M+ GV  + +
Sbjct: 150 DLEYPVLLAGHTSLVRDEFGAGWQALKDDVIINPTWRLSLDRALNVYRYIMEQGVDPE-M 208

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            ++  F   + +    ++     NRR++I+++ R
Sbjct: 209 VRLEAFGEFQPRYGTRTEANRRQNRRVEIVLDRR 242


>gi|313500273|gb|ADR61639.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 263

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 18/235 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  Q+       T+D++   +      +++   K+      
Sbjct: 21  SHDPNANLEAARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L           A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEADLKNASAERAKAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSNAYPNVTKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI S+  G  +     +S+   + NRR+++ + +
Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248


>gi|257126323|ref|YP_003164437.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050262|gb|ACV39446.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 215

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
           GV    T  G  I +    N   FD +S +  P+    L  +  VL    +  I + GHT
Sbjct: 89  GVEVRRTGEG-EIKLTAPENIT-FDLNSYVVKPQFRGTLDSVATVLKTYPDSTIIVSGHT 146

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D S   N A +N  LS++RA S    L   G++  R++   G+         A++   + 
Sbjct: 147 DTS--GNDAINN-PLSVNRAASVASYLQSQGIASSRMT-YRGYGSKMPIASNATEAGRAQ 202

Query: 331 NRRIDILVEDRQ 342
           NRR++I +   Q
Sbjct: 203 NRRVEIAIIANQ 214


>gi|196231290|ref|ZP_03130149.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
 gi|196224626|gb|EDY19137.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
          Length = 316

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 16/265 (6%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P  +    + ++I E     S       T  K              + + S    + L 
Sbjct: 54  RPAITPIKMVRVNITEPPAAESKTETTPKTPVKPIKIEETKPFADEVDLKPSAPDVSPLV 113

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFL--PPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
               K  DL        S+   E      P    ++ LA+ R+ +++  A          
Sbjct: 114 PAKPKNLDLSGFETPASSVAALEKQLSAKPGAILDQSLAVGRQPKIKLPAGPKGGEGGVG 173

Query: 207 VADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +I            +       I  +   +F+   +  LP+ I  LQK+ +++  + 
Sbjct: 174 SDGSIPGRASLNDALGNVGAFNNKPIAMQGGALFEWGKAELLPQAIQNLQKLAQLIRLNP 233

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           +    I GHTD +        N  LS  RA S    L+ + G+   RI+ + G A     
Sbjct: 234 KATFIISGHTDHT---GTHEGNLILSQQRADSVRDWLVANLGIDPMRITTV-GKADDEAF 289

Query: 322 IASDP-----MNSANRRIDILVEDR 341
               P       + NRR++I+++ R
Sbjct: 290 PNLGPDKSIEEQAPNRRVEIVIKTR 314


>gi|310818239|ref|YP_003950597.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391311|gb|ADO68770.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 565

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279
            G  I I++  N   F     I L E+  +L+++ ++L    E   + + GHTD+   R+
Sbjct: 414 QGNKILILEPIN---FATDQDILLSESWPILEEVSQMLKTHPEIKRLLVEGHTDS---RS 467

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
               N  LS  RA S    L +SGV  +R+    GF   R      ++   + NRR++  
Sbjct: 468 SDEYNLELSRRRAASIRVYLEESGVESERLCS-QGFGRSRPVADNKNEEGMALNRRVEFT 526

Query: 338 VEDRQG 343
           V     
Sbjct: 527 VLPPPA 532


>gi|189179677|dbj|BAG39458.1| outer membrane protein [Gluconacetobacter intermedius]
          Length = 364

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +     +  ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 256 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTSAHPGPRGEKYNLGLSMRR 315

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV  + I  + G+      + +  D     NRR++I++
Sbjct: 316 ADSVKAELIRDGVPANAID-VHGYGEAHPLVPTGPDTREPQNRRVEIIL 363


>gi|153867892|ref|ZP_01998087.1| OmpA family protein [Beggiatoa sp. SS]
 gi|152144788|gb|EDN71913.1| OmpA family protein [Beggiatoa sp. SS]
          Length = 170

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP 276
            T  G+  ++     +  F    +  LPE    + +  E++    +   I++ GHTD   
Sbjct: 48  ETDRGLQFTLY----SVFFKTGKAKLLPEGEQQITEFVELIQEYDDSRAIAVEGHTDN-- 101

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
            R     N RLS  RA +    L+  G+  +R+  I GF        +   N    NRR+
Sbjct: 102 -RGSKAYNQRLSKRRAETVQNALITKGIEPNRLI-IKGFGEKEPLTTNATKNGRQQNRRV 159

Query: 335 DILVEDRQ 342
           +I++   Q
Sbjct: 160 EIILLKNQ 167


>gi|307301173|ref|ZP_07580935.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|307321074|ref|ZP_07600479.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306893246|gb|EFN24027.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306903629|gb|EFN34216.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 227

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   F       +P     L  +  VL    +  I + G
Sbjct: 97  LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFNKTLIDVDG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD++     A  N  LS  RA S    L   GV + R+S + G+   R   ++      
Sbjct: 156 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGLERPIASNATEVGR 211

Query: 329 SANRRIDILVED-RQG 343
           + NRR++I +   +QG
Sbjct: 212 AQNRRVEISIAPIKQG 227


>gi|66967954|gb|AAY59422.1| outer membrane protein A [Allochromatium vinosum]
          Length = 225

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +++  +     L+  +A  +++       +      ++       F+  S    P     
Sbjct: 79  MEEQQRDFERQLAPEIASGVIRVQKLPDHQ-----LLVGMTGATAFEVDSDRIRPGFYST 133

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+KI  ++    +  +++ GHTD++     A  N  LS  RA S    L +SGV   RI 
Sbjct: 134 LEKISAIVRKYGKTQLAVSGHTDST---GAAAYNQTLSERRAASVGYYLERSGVLPQRIY 190

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             +G+  ++   ++   +    NRR+DIL+  
Sbjct: 191 S-AGYGMNQPIASNATEDGRRLNRRVDILIMP 221


>gi|257091971|ref|YP_003165612.1| hypothetical protein CAP2UW1_0326 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044495|gb|ACV33683.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 214

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E    ++ + + + + +K    L   +A  +  G     T     I I     + +
Sbjct: 38  GVQLELATHLEAEVQKRQMEEKRRMALEKALAIPLATG---RVTLNNGRIGIS---GSVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR---NIARDNWRLSL 289
           F  +S    P   ++L+ +   L        E++ + G TD  P +   +   DNW LS 
Sbjct: 92  FALNSDQLQPAGRLLLKSLVAPLRVYLGERDELLMVSGFTDDVPIQHGNSRFVDNWELSA 151

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            RA +  + L+  G+    I   + G        A D   S NRR++
Sbjct: 152 QRALTVTRALIDEGMPSSLIFAAAFGTEQPVASNADDRGRSQNRRVE 198


>gi|16762663|ref|NP_458280.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766931|ref|NP_462546.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29144150|ref|NP_807492.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62182147|ref|YP_218564.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161505818|ref|YP_001572930.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161616710|ref|YP_001590675.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549121|ref|ZP_02342880.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168232486|ref|ZP_02657544.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235246|ref|ZP_02660304.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241813|ref|ZP_02666745.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168465059|ref|ZP_02698951.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818532|ref|ZP_02830532.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446335|ref|YP_002042894.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450414|ref|YP_002047675.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470919|ref|ZP_03076903.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738075|ref|YP_002116578.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250152|ref|YP_002148575.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264832|ref|ZP_03164906.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245549|ref|YP_002217605.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387506|ref|ZP_03214118.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928737|ref|ZP_03219936.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|213426937|ref|ZP_03359687.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580286|ref|ZP_03362112.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213622354|ref|ZP_03375137.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646868|ref|ZP_03376921.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852846|ref|ZP_03382378.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585444|ref|YP_002639243.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910327|ref|ZP_04654164.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289811587|ref|ZP_06542216.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824292|ref|ZP_06543885.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25512154|pir||AC0982 probable outer membrane protein STY4157 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422210|gb|AAL22505.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504969|emb|CAD07983.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139787|gb|AAO71352.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129780|gb|AAX67483.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160867165|gb|ABX23788.1| hypothetical protein SARI_03994 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366074|gb|ABX69842.1| hypothetical protein SPAB_04529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404998|gb|ACF65220.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408718|gb|ACF68937.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457283|gb|EDX46122.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713577|gb|ACF92798.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632363|gb|EDX50847.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213855|gb|ACH51252.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243087|gb|EDY25707.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291562|gb|EDY30914.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940065|gb|ACH77398.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604604|gb|EDZ03149.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322170|gb|EDZ07368.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205325701|gb|EDZ13540.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333235|gb|EDZ19999.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338706|gb|EDZ25470.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344463|gb|EDZ31227.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|224469972|gb|ACN47802.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|267995894|gb|ACY90779.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914671|dbj|BAJ38645.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088065|emb|CBY97827.1| Inner membrane lipoprotein yiaD Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226700|gb|EFX51750.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613966|gb|EFY10902.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620335|gb|EFY17203.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625340|gb|EFY22167.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629993|gb|EFY26766.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634183|gb|EFY30918.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635916|gb|EFY32625.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643166|gb|EFY39740.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644613|gb|EFY41149.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650855|gb|EFY47247.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652981|gb|EFY49316.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659944|gb|EFY56184.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663277|gb|EFY59481.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668763|gb|EFY64916.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674434|gb|EFY70527.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678358|gb|EFY74419.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680864|gb|EFY76898.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687200|gb|EFY83173.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716635|gb|EFZ08206.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132006|gb|ADX19436.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192159|gb|EFZ77392.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200663|gb|EFZ85737.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201373|gb|EFZ86439.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206773|gb|EFZ91727.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211797|gb|EFZ96629.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216156|gb|EGA00884.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220379|gb|EGA04833.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226236|gb|EGA10451.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228356|gb|EGA12487.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234177|gb|EGA18265.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237162|gb|EGA21229.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244681|gb|EGA28685.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249162|gb|EGA33080.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250719|gb|EGA34599.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257594|gb|EGA41281.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262303|gb|EGA45864.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266142|gb|EGA49633.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268777|gb|EGA52235.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625391|gb|EGE31736.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629887|gb|EGE36230.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990496|gb|AEF09479.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 220

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|319785152|ref|YP_004144628.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171040|gb|ADV14578.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 335

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +     PE+   L +I +VL       + I GHTD       A  N  LS  RA +
Sbjct: 232 LFDYNQDAVKPESKPALDEIAKVLTDKPALRLKIIGHTDN---AGSAAYNLDLSTRRAAN 288

Query: 295 AYQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
               L+   G+   R+S + +G +       +D   + NRR++++V+
Sbjct: 289 VSAALVGGYGIDPARLSFEGAGLSRPIESNDTDEGRAKNRRVELVVQ 335


>gi|116329294|ref|YP_799014.1| flagellar motor protein MotB [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330099|ref|YP_799817.1| flagellar motor protein MotB [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122038|gb|ABJ80081.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123788|gb|ABJ75059.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 275

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E + +    K L    K  +      V    VK         G++IS++       F+  
Sbjct: 78  ESLPSQTTGKALSKSKKLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291
           S+I      + L+K   ++      + + GH DA+                +NW L+  R
Sbjct: 132 SAILTDSIKITLRKASSLIKELDRFVRVEGHCDANALNPGVAPGKEERAYINNWDLAGAR 191

Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342
           A  +   ++    +       +S F   R  +   A  P   A NRRIDI+V   +
Sbjct: 192 AINATDYIINVEKLDPSWFQAVS-FGAFRPLVIEYAGTPEAKAYNRRIDIVVMTEK 246



 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N+  + + Y D +T+L+ FF++++    T+    + I   F          
Sbjct: 3   KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           + G FD      +    ++ ++I+   ++ + 
Sbjct: 55  TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86


>gi|323700139|ref|ZP_08112051.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323460071|gb|EGB15936.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 241

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 10/205 (4%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            +    + LT+ +    DL             +   +  L ++    + +++R++DL   
Sbjct: 37  MASMDNSILTKVTLTTADLGLLDKRGSGRVNAKERLIVELMEKPWEVLDKQQRIKDLLFP 96

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                  +    +   +     + G+ +   D     +F    S        ++ ++  +
Sbjct: 97  DDILPDEISKAELNDNLDVLAKQDGVALVFTD---RILFAPGGSELSDTGKFLMARLVPM 153

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +  +   I++ G+TDA    +  +    LS DRA +    L+  GV + R   +S +   
Sbjct: 154 MTQTDAPINVAGYTDA---SDATQTPLELSGDRALAVLAFLVDKGVHDSRF-SLSAYGDA 209

Query: 319 RLKIAS---DPMNSANRRIDILVED 340
              I        +  NRR++IL++ 
Sbjct: 210 FPVINELGRPVASPRNRRVEILLKT 234


>gi|171915499|ref|ZP_02930969.1| OmpA/MotB domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 355

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 98/306 (32%), Gaps = 26/306 (8%)

Query: 53  IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
            +        KA     NP       A + I D   P +++   ++   + +       D
Sbjct: 55  SMLPVTQTKAKADRIAINPEALKEQQAIQHIPDLIAPSDKAEP-QLKADLQDIAEMIPED 113

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---- 168
             +  T    +           + +  +     +   D   G DL  S D  KS      
Sbjct: 114 RPLNLTPDVDKVTNFLAPKSNPNATSPAHAPSMAAIADMAPGPDLASSMDAIKSSALRQA 173

Query: 169 -KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-- 225
             ++   LP    +K L     K L  L  +  +      A      +     R G +  
Sbjct: 174 VSDQQLVLPAKPLDKELEGMDGKLLDRLNNQSKAGDGSPRAMAGYSNLEDLLARGGAVNA 233

Query: 226 ----ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
               I +       +F+  S        + L K+G ++  +      I GHTD       
Sbjct: 234 STAPIML---PTDLLFEYGSDQLAENARLSLMKLGYLITKNPNSRFIIEGHTDTI---GS 287

Query: 281 ARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN-----SANRRI 334
           A  N  LS  RA +    L++S  +S DRI  + G    R     +P       + NRR+
Sbjct: 288 AEFNLDLSQRRANAVVGWLIRSLRLSNDRIDAV-GMGESRPLARVNPNGTKEEQALNRRV 346

Query: 335 DILVED 340
           +I V  
Sbjct: 347 EIKVRP 352


>gi|261417272|ref|YP_003250955.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373728|gb|ACX76473.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 294

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 10/192 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIV 212
            ++  K     ++I   +       S +       K+ ++    K+ ++    +   N +
Sbjct: 104 AENWEKRAATNRTIEAIQEQIGEARSGKVSDLEAEKQAIKAQKDKLEASKNEAMDKLNAL 163

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271
           +  + + T+    I +    +  +FD   +    + +  L KI  +L+ +    +SI G+
Sbjct: 164 QSQMIQVTKDARGIIL--SMSDILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGN 221

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD +        N  LS  RA +  + L++ G++E R++   G         +       
Sbjct: 222 TDNT---GSEEFNMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMTMPIADNSTKEGRQ 277

Query: 330 ANRRIDILVEDR 341
            NRR+D+++ DR
Sbjct: 278 KNRRVDLVITDR 289


>gi|162448390|ref|YP_001610757.1| putative ompA family protein [Sorangium cellulosum 'So ce 56']
 gi|161158972|emb|CAN90277.1| putative ompA family protein [Sorangium cellulosum 'So ce 56']
          Length = 617

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 22/266 (8%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P +R     +D       T    +             R ++ I    ++   +    +  
Sbjct: 354 PSDRDEDGFLDRVDACPDTPGIANDDPKKHGCPPPGDRDKDGITDDVDAC-PDEAGPANE 412

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA------MKRKKRLQDLAKKISST 202
              + G       D +  I+ E+     P  +    A       +    ++D        
Sbjct: 413 DPKKHGCPPPPDRDGDGVIDAEDACPDIPGIRTSDPATNGCPGDRDGDTVRDDQDACPDE 472

Query: 203 LSGLVADNIVKG--VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                 D    G  V    T T I+I          FD   +     +  +L ++  VL 
Sbjct: 473 KGKPDPDPTKNGCPVAVRMTETEIVIL-----QQVQFDTGKATIKKVSDPLLDEVAGVLK 527

Query: 261 HSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
              E   I ++GHTD    R     N +LS  RA S  + L++ G+  +R++   G+   
Sbjct: 528 EHPEITKIEVQGHTDP---RGGRAYNIKLSQARAESVTKALVQRGIEAERLAS-KGYGPD 583

Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342
                +D       NRR+   + +++
Sbjct: 584 VPIAENDTDEGRQKNRRVQFKILEKK 609


>gi|293194233|ref|ZP_06609955.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus
           F0309]
 gi|292819752|gb|EFF78765.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus
           F0309]
          Length = 348

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281
           G +I++ D     +FD   S   P+    L K+  VL  +    + I GHTD+    +  
Sbjct: 229 GTVITLEDS---ILFDFGESDIRPDAAHTLSKLATVLNDAKVPAAHIYGHTDSV---SDE 282

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333
             N +LS DRA +    L K G S   I   +G+   +    ++           + NRR
Sbjct: 283 AFNQKLSEDRANAVSAELKKDGASA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 340

Query: 334 IDILV 338
           ++I +
Sbjct: 341 VEIFI 345


>gi|319796493|ref|YP_004158133.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315598956|gb|ADU40022.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 219

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPET 248
           +R+++  +++ +   G        GV    T+   + ++I    +   FD   +   P  
Sbjct: 74  QRMENQKRQMEAATQGT-------GVAVTQTQNNELKLAI---PSDVSFDVGRANIKPNF 123

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             VL +    L ++    + I GHTD++    I      LS+DRA S    L+  GV+  
Sbjct: 124 APVLDQFASGLRNNPNAEVRIIGHTDSTGSDAINNP---LSVDRAASTRDYLVARGVNAA 180

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
              +I G   H       SD   + NRR++I V +R
Sbjct: 181 -AFRIEGRGSHEPVADNNSDAGRAQNRRVEIYVGER 215


>gi|261414988|ref|YP_003248671.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371444|gb|ACX74189.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326246|gb|ADL25447.1| ompA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 756

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+  L  +   L  I  +L       + ++GHTD          N +LS DRA+S 
Sbjct: 547 FEFDSAKLLKSSYPTLDDIIALLEKIPEVKLEVQGHTD---IVGTEDYNQKLSEDRAHSV 603

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
                  G++ DR+  I GF        +  D   + NRR++++
Sbjct: 604 TDYFQSKGIAADRLRAI-GFGTRMPLADNVTDEGRAKNRRVELI 646


>gi|284048599|ref|YP_003398938.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952820|gb|ADB47623.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 235

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 34/169 (20%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRN------TPMFDKSSSIPLPETIVVLQKIGEVL- 259
           + + ++K V  +    G+ + I  ++       + +F+   +    +    + K+ + L 
Sbjct: 56  LRNQLLKDVGKDLQAQGLQVRIDTKQGVLRIPESVLFESGEANIKEQGQAAVGKLSQSLL 115

Query: 260 --------AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE---- 306
                     + E + I GHTD  P  N     NW LS  RA + +  LM++ V E    
Sbjct: 116 KTMTRPEYREALETVFIEGHTDNVPIHNEFFQSNWELSTQRAINTWN-LMRNDVPEFNWL 174

Query: 307 -----DRISKISGFAHHRLKIAS--DPM----NSANRRIDI--LVEDRQ 342
                + I   SG+A  R    +  DP      +ANRRIDI  ++   Q
Sbjct: 175 VNPRGEPIFSCSGYAETRPVRENGLDPNSEEGRAANRRIDIRFVMMPPQ 223


>gi|120613225|ref|YP_972903.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120591689|gb|ABM35129.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 296

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           K      +  +  ++ +   +   +  +     + +      +   +       +  ++ 
Sbjct: 108 KKAGADAERLRLTSEADRARMQAEANARSAQQAQLQAASAEQRAADNAARVRALEAQLRD 167

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+L+++ D     +F  + +    +    L K+   L    +  + I GHTD
Sbjct: 168 IEAQQTERGLLVTLGD----VLFAFNKAELSAQAGPRLDKLANFLRQFPDRKLIIEGHTD 223

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331
           +         N  LS  RA +    L++ GV+ DRI+   G+        +      + N
Sbjct: 224 SV---GGDAYNQSLSERRAQAVQSALVQRGVAPDRITA-RGYGKTYPVADNSSPEGRAMN 279

Query: 332 RRIDILVEDRQG 343
           RR++I++ D +G
Sbjct: 280 RRVEIVIADEKG 291


>gi|148260706|ref|YP_001234833.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326403901|ref|YP_004283983.1| hypothetical protein ACMV_17540 [Acidiphilium multivorum AIU301]
 gi|146402387|gb|ABQ30914.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
 gi|325050763|dbj|BAJ81101.1| hypothetical protein ACMV_17540 [Acidiphilium multivorum AIU301]
          Length = 342

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 104/327 (31%), Gaps = 20/327 (6%)

Query: 28  NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
           N L  W        T+LM    V+ +    +     A+    N     L +    +    
Sbjct: 10  NGLEIWPGYVDALSTLLMVTIFVLLVFVLAEAFLSVALSGR-NKTITALRSEIAQLSHVL 68

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
              +  + +  D          +   +  +          +      + +         +
Sbjct: 69  ALQKSKTASLQDELASMASLMKAAKTREAALMAANAALTAKTATLGAAVTAAGGKLAGQV 128

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
             ++++ + +        ++  +       L   +    +   ++ DL ++++  L+  V
Sbjct: 129 KLNAQELQTVSLLNQQIAALRLQLATIAAALDAAQKKDQEEHVQIADLGQRLNEALARKV 188

Query: 208 AD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
                       +++  L +     ++       +  +F   S+    +    + K+ + 
Sbjct: 189 QSLEQYRSEFFGVLRKALADQKDIKVVGDRFVFESAVLFPSDSARLSAKGKAEIAKVAQA 248

Query: 259 LAHSTEVI--------SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +      I        S+ G+ D          DN+ LS  RA S   +L+  GV ++R+
Sbjct: 249 IEAIAPKIPDKINWVLSVTGYADKEAITGGPYKDNFDLSAARALSVLHLLIADGVPKNRV 308

Query: 310 SKISGFAHHRLKIASDPMN-SANRRID 335
                 A H +   + P + + NRRI+
Sbjct: 309 VAAGFGADHPIATGNTPQDLAQNRRIE 335


>gi|306812301|ref|ZP_07446499.1| OmpA family membrane protein [Escherichia coli NC101]
 gi|305854339|gb|EFM54777.1| OmpA family membrane protein [Escherichia coli NC101]
          Length = 550

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           + I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|293410201|ref|ZP_06653777.1| flagellar motor protein MotB [Escherichia coli B354]
 gi|291470669|gb|EFF13153.1| flagellar motor protein MotB [Escherichia coli B354]
          Length = 58

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
          KNQ +   I++K++ A      + GSWKI YADFMT +MAFFLVMW+I+ +       I
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQI 58


>gi|332879143|ref|ZP_08446844.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682943|gb|EGJ55839.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 454

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E T+  +   +     T +FD   S   PE+  VL  I  VL        S+ G+TD   
Sbjct: 334 EVTQE-VQTQLNSFAKTILFDVGKSTIRPESATVLNNIVNVLNKYKNSKFSVEGYTDT-- 390

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
                  N RLS DRAYS    L+  G++  R+S   GF   +   ++        NRR+
Sbjct: 391 -SGNKDKNQRLSEDRAYSVKAYLVDKGINPARLSA-KGFGPEKPIASNKTKKGRELNRRV 448

Query: 335 DI 336
           +I
Sbjct: 449 EI 450


>gi|45656521|ref|YP_000607.1| flagellar motor protein MotB [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45599756|gb|AAS69244.1| sodium translocating Bacterial Flagellar Motor protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 275

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E + +    K L    +  +      V    VK         G++IS++       F+  
Sbjct: 78  ESLPSQTTGKALSKSKQLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291
           S+I      + L+K   ++      + + GH DA+                +NW L+  R
Sbjct: 132 SAILTDSIKIALRKASSLIKDLNRFVRVEGHCDANAVNPGVAPGKEERAYINNWDLAGAR 191

Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342
           A  S   ++    +       +S F   R  +   A  P   A NRRIDI++   +
Sbjct: 192 AINSTDYIINVEKLDPSWFQAVS-FGAFRPLVVEYAGTPEAKAYNRRIDIVIMTEK 246



 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N+  + + Y D +T+L+ FF++++    T+    + I   F          
Sbjct: 3   KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           + G FD      +    ++ ++I+   ++ + 
Sbjct: 55  TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86


>gi|307718829|ref|YP_003874361.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
 gi|306532554|gb|ADN02088.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
          Length = 414

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E    GI I++        F    ++ LP     L  + E L    +  I + GHT   
Sbjct: 295 VEEVPEGIKITLRTLH----FLPDQAVLLPGEEEKLDLLAEALNAIPDRTILVVGHTADV 350

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                      LS  RA +  + L+K GV  +R+    G         +D       NRR
Sbjct: 351 GKPRGQM---ALSEARAKTIVEELVKRGVKPERLI-YLGKGGTEPVAPNDTEEGRRLNRR 406

Query: 334 IDILVED 340
           ++I V +
Sbjct: 407 VEIFVLE 413


>gi|187929665|ref|YP_001900152.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J]
 gi|309781567|ref|ZP_07676302.1| inner membrane lipoprotein YiaD [Ralstonia sp. 5_7_47FAA]
 gi|187726555|gb|ACD27720.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|308919672|gb|EFP65334.1| inner membrane lipoprotein YiaD [Ralstonia sp. 5_7_47FAA]
          Length = 209

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + + L   
Sbjct: 73  SKLAGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAQTLTQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   ++ GHTD++        N  LS  RA S    L   GV+ +R+S   G   ++  
Sbjct: 130 PELAANVVGHTDST---GNPNYNLTLSQKRAQSVASYLTDRGVARNRLSA-EGRGQNQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   + NRR++I ++  QG
Sbjct: 186 ADNATEAGRAQNRRVEIYLKPIQG 209


>gi|160901602|ref|YP_001567183.1| OmpA/MotB domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359246|gb|ABX30860.1| OmpA/MotB domain protein [Petrotoga mobilis SJ95]
          Length = 290

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           I   L  ++ D   KG +  E T  G +IS+ D      F   S+    E   +L +IG 
Sbjct: 80  IRQELLKIIEDEKYKGKITIEETDKGTIISMRDI---AFFRPGSAELTAEAKDLLYRIGT 136

Query: 258 V-LAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           + L H++  I + G TD  P    ++   NW LS  RA S         +   R+  +  
Sbjct: 137 IILEHTSNAIEVYGFTDDQPVLPSSVYPSNWHLSAARAASVVNFFTIE-LKNRRL--VEK 193

Query: 315 FAH 317
            A 
Sbjct: 194 MAE 196



 Score = 39.5 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA----IEQYFNPFGKNLM 77
                      W   ++D  T+L+  F+ ++ +        +     ++  F      ++
Sbjct: 3   RKKREKTGDAKWMQTFSDMTTLLLTMFIALFSMATISPGKFQQAVVSLQNVFEGQPIGVL 62

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              + I DE          +  L I E   K    + I  T++       +   F   ++
Sbjct: 63  VGGRSISDEPLITSNPGIRQELLKIIED-EKYKGKITIEETDKGTIISMRDIAFFRPGSA 121

Query: 138 QQSEHCKNSLTRDS 151
           + +   K+ L R  
Sbjct: 122 ELTAEAKDLLYRIG 135


>gi|84684107|ref|ZP_01012009.1| OmpA/MotB domain protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84667860|gb|EAQ14328.1| OmpA/MotB domain protein [Rhodobacterales bacterium HTCC2654]
          Length = 481

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI----SIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S+     ++ ++  +  +L H T+ I    +I GHTD+        +N+RLS+ RA
Sbjct: 376 FVTGSAELDTASMSIINDMAGLLLHCTDKIGMRVTIGGHTDSQ---GDDNENYRLSVARA 432

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
            +    L+  GV   R+ +  GF        +D     +ANRR
Sbjct: 433 NAVRDALVARGVPAGRM-QALGFGETEPIADNDTEEGRAANRR 474


>gi|255534904|ref|YP_003095275.1| OmpA/MotB domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341100|gb|ACU07213.1| OmpA/MotB domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 230

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +   AK+I  TL G            E    GI +++ +      FD  SS       
Sbjct: 80  RNMDKQAKEIKETLPGA---------EVERVGEGIRVTMKENMVNFGFD--SSELTSAAK 128

Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+ +VL  +    I+I GHTD+   +     N  LS  RA +    L+  GV+  R
Sbjct: 129 TNLDKLAQVLKNNMDTNINIYGHTDS---KGTDAYNLSLSERRAAAVRSYLISQGVASSR 185

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +    G        ++D     + NRR++  +   +
Sbjct: 186 ML-TMGVGEKEPVASNDTDAGRAENRRVEFAITANE 220


>gi|92115424|ref|YP_575352.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91798514|gb|ABE60653.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 71/210 (33%), Gaps = 17/210 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +  QQ +H K                           +  L   +    +       + 
Sbjct: 26  QTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGSTSRRDRALIGAAAGAAIGGGVGAYMD 85

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              +K+   L G               R G  I +    ++  FD  SS         L 
Sbjct: 86  AQEEKLRRDLDGT---------GIGVDRQGDNIVLN-MPSSVTFDVDSSALKTPARQALN 135

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
               V+    +  I++ G+TD++     A  N RLS  RA +    L + G++ +RI+ +
Sbjct: 136 DATAVMREYPKTRINVAGYTDST---GSADYNQRLSERRAQAVADYLGQGGIAANRINTV 192

Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVED 340
            G+   +   ++D     + NRR++I +  
Sbjct: 193 -GYGERQPVASNDTESGRAQNRRVEITLTP 221


>gi|262041860|ref|ZP_06015044.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040765|gb|EEW41852.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 565

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 236 MFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   S   P +  +L   +  +      +I + GHTD+       R N +LSL RA +
Sbjct: 435 LFDTGKSALKPGSTKLLVNSLLGIKVKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEA 491

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               +  +G   +    + G+   R   +++     + NRR++I +  ++
Sbjct: 492 VRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQK 541


>gi|94311700|ref|YP_584910.1| OmpA/MotB [Cupriavidus metallidurans CH34]
 gi|93355552|gb|ABF09641.1| outer membrane protein, OmpA/MotB family(modular protein)
           [Cupriavidus metallidurans CH34]
          Length = 294

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
           G    I +Q +  +         FD  SS   P    VL ++ + LA H     ++ GHT
Sbjct: 166 GTGTQITEQPDGSLKVNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHT 225

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D++   N    N +LS  RA S    L   GV+  R+S   G    +     +++   + 
Sbjct: 226 DST--GNPQY-NMQLSQRRAQSVAGYLGDRGVARTRLSA-EGRGQTQPVADNSTEAGRAQ 281

Query: 331 NRRIDILVEDRQG 343
           NRR++I ++   G
Sbjct: 282 NRRVEIFLKPISG 294


>gi|91212188|ref|YP_542174.1| hypothetical protein UTI89_C3194 [Escherichia coli UTI89]
 gi|218559806|ref|YP_002392719.1| hypothetical protein ECS88_3087 [Escherichia coli S88]
 gi|91073762|gb|ABE08643.1| hypothetical protein UTI89_C3194 [Escherichia coli UTI89]
 gi|218366575|emb|CAR04328.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|294493880|gb|ADE92636.1| OmpA domain protein [Escherichia coli IHE3034]
 gi|307625612|gb|ADN69916.1| hypothetical protein UM146_02475 [Escherichia coli UM146]
 gi|315289326|gb|EFU48721.1| OmpA family protein [Escherichia coli MS 110-3]
 gi|323951748|gb|EGB47623.1| OmpA family protein [Escherichia coli H252]
 gi|323957271|gb|EGB52994.1| OmpA family protein [Escherichia coli H263]
          Length = 550

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|119476926|ref|ZP_01617207.1| ompA family protein [marine gamma proteobacterium HTCC2143]
 gi|119449733|gb|EAW30970.1| ompA family protein [marine gamma proteobacterium HTCC2143]
          Length = 213

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G      R G  I +I    +  F+  S +       VL+ +G VLA  
Sbjct: 76  VQESALREQLQGSGVRVVREGDNIRLI-MPGSITFETDSYVLRRSFSPVLESVGLVLAKY 134

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E ++ + GHTD +      + N RLS DRA S    LM  GV  +R+  I G       
Sbjct: 135 NETMMRVTGHTDNT---GGEQYNQRLSEDRAQSVASNLMSQGVDGNRLY-IQGSGETMPI 190

Query: 322 IASDP--MNSANRRIDILVED 340
             ++     ++NRR+++ +  
Sbjct: 191 ADNNTSSGRASNRRVELYILP 211


>gi|108761291|ref|YP_633197.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108465171|gb|ABF90356.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 640

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR 282
            I +++      F+ +  I +  +  +L  +  +L    E   + + GHTD    R    
Sbjct: 511 RIQLLE---AVYFENNKDIIIARSNKLLDTVANILIAHPEVEKVRVEGHTDN---RGNPD 564

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID--IL- 337
            N  LS  RA +  + L+  GV+ +R+    GF   +    ++     + NRR++  I+ 
Sbjct: 565 YNLDLSQRRADAVVRYLVSKGVARERLDA-KGFGPTQPIADNNTTQGRAKNRRVEFKIVG 623

Query: 338 ----VEDRQG 343
               V+ +QG
Sbjct: 624 DAEGVQTQQG 633


>gi|27366989|ref|NP_762516.1| outer membrane protein A [Vibrio vulnificus CMCP6]
 gi|37676767|ref|NP_937163.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|27358557|gb|AAO07506.1| Outer membrane protein A precursor [Vibrio vulnificus CMCP6]
 gi|37201310|dbj|BAC97133.1| outer membrane protein [Vibrio vulnificus YJ016]
          Length = 357

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q N  +F   SS         L  + EVL    +    I GHTD++      + N R+S 
Sbjct: 238 QYNQELFATGSSKLSAGGKQALTPLAEVLIKYPDAEAEIVGHTDST---GSEKVNQRISE 294

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            RA +    L++ GV  +++ K+ G    +   ++      + NRR+++ +
Sbjct: 295 QRAQAVADYLVEQGVKAEQL-KVRGAGESQPIASNKTAEGRAQNRRVEVTI 344


>gi|288959500|ref|YP_003449841.1| ompA/MotB domain protein [Azospirillum sp. B510]
 gi|288911808|dbj|BAI73297.1| ompA/MotB domain protein [Azospirillum sp. B510]
          Length = 416

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P+   +++          L  +I+  L+  +    V+ +  E     ++I I       M
Sbjct: 256 PIEIARLVPPPPPTAGPALIARITGQLAPEIRTGAVEVLAGE--DGALVIRI---PAAAM 310

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSA 295
           F             +++++G+ LA     + +  HTD   P          L+  RA + 
Sbjct: 311 FATGGDAVKARHRAIVERVGQTLAAEPGGVLVVAHTDDQSPTTGRLPTGQALTDARAEAV 370

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            ++L +S +   R+S   G         +D      ANRRIDI
Sbjct: 371 RRLLERS-IPPARLSA-EGHGDQEPVALNDTPAGRDANRRIDI 411


>gi|205354747|ref|YP_002228548.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858882|ref|YP_002245533.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274528|emb|CAR39567.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710685|emb|CAR35045.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261248795|emb|CBG26648.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301160182|emb|CBW19704.1| putative outer membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
          Length = 209

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 72  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 130

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG       
Sbjct: 131 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 186

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 187 ASNSTAEGKAQNRRVEITLSPLQ 209


>gi|117625045|ref|YP_854033.1| putative outer membrane protein [Escherichia coli APEC O1]
 gi|115514169|gb|ABJ02244.1| putative outer membrane protein [Escherichia coli APEC O1]
          Length = 537

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 386 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 444

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 445 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 500

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 501 LGESQPAATNDTPQGRAVNRRVEISLVPR 529


>gi|326319300|ref|YP_004236972.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376136|gb|ADX48405.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 296

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           K      +  +  ++ +   +   +  +     + +      +   +       +  ++ 
Sbjct: 108 KKAGADAERLRLTSEADRARMQAEANARSAQQAQLQAASAEQRAADNAARVRALEAQLRD 167

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T  G+L+++ D     +F  + +    +    L K+   L    +  + I GHTD
Sbjct: 168 IEAQQTERGLLVTLGD----VLFAFNKAELSAQAGPRLDKLANFLRQFPDRKLIIEGHTD 223

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331
           +         N  LS  RA +    L++ GV+ DRI+   G+        +      + N
Sbjct: 224 SV---GGDAYNQSLSERRAQAVQSALVQRGVAPDRITA-RGYGKTYPVADNSSPEGRAMN 279

Query: 332 RRIDILVEDRQG 343
           RR++I++ D +G
Sbjct: 280 RRVEIVIADDKG 291


>gi|189179676|dbj|BAG39457.1| outer membrane protein [Gluconacetobacter intermedius]
          Length = 373

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +     +  ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 265 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTSAHPGPRGEKYNLGLSMRR 324

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV  + I  + G+      + +  D     NRR++I++
Sbjct: 325 ADSVKAELIRDGVPANAID-VHGYGEAHPLVPTGPDTREPQNRRVEIIL 372


>gi|186476941|ref|YP_001858411.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184193400|gb|ACC71365.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 217

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + L  + EV++ + GHT
Sbjct: 86  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHT 145

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++        N  LS++RA S  Q L   GV+  R+S  +G   ++    ++     + 
Sbjct: 146 DST---GQPAYNQTLSVNRAQSVAQQLATDGVAPQRLSA-TGMGANQPIADNNTETGRAQ 201

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 202 NRRVEIYL 209


>gi|90019934|ref|YP_525761.1| hypothetical protein Sde_0285 [Saccharophagus degradans 2-40]
 gi|89949534|gb|ABD79549.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 364

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE+   L ++  +L       I I GHTD       ++ N +LS  RA S 
Sbjct: 199 FDSGKSALKPESDSELAELATILNEHPALKIKIVGHTDNV---GDSKANLKLSAARAKSV 255

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
              L+K+  V+   +S   G    +    +  D   + NRR++I+  + +
Sbjct: 256 LNALVKNFNVNAANLSA-EGQGETQPVDTNSTDMGRAKNRRVEIIAINPE 304


>gi|222081943|ref|YP_002541308.1| OmpA/MotB domain protein [Agrobacterium radiobacter K84]
 gi|221726622|gb|ACM29711.1| OmpA/MotB domain protein [Agrobacterium radiobacter K84]
          Length = 494

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P +  VL  I   +       + + GHTD+         N  LS  RA + 
Sbjct: 393 FDTGKARISPASSGVLDTIVATIGRCPGNAVEVSGHTDS---SGDEAANVALSEQRAKAV 449

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
              L  +GV   R++ + G    R   ++D     + NRRI+  V+
Sbjct: 450 VTYLTDAGVPASRLTAV-GLGSSRPVASNDTDEGKALNRRIEFSVK 494


>gi|167032120|ref|YP_001667351.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166858608|gb|ABY97015.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 263

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  QS       T+D++   +      +++   K+      
Sbjct: 21  SHDPNANLEAARTNFSSLQSDPQSSKVAALETKDAQDWLNKADKAYMDREDQKQVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRIEVAKQTIALRTAEGELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +         + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQS 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           LS  RA S    L+++GV   RI    G+        +  +   + NRR+++ + +
Sbjct: 194 LSERRAGSVRMALVRAGVDPARIVS-QGYGKEYPVADNGSNSGRAQNRRVEVTISN 248


>gi|120555732|ref|YP_960083.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120325581|gb|ABM19896.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 236

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++G      R G  I +I       FD   S         L+ +  VL    + +I I
Sbjct: 106 QKLEGTGVRVVRNGDQIDLI-MPGNITFDTDQSTIRSGFTGTLESVALVLKEFDKTIIQI 164

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GHTD++        N  LS  RA S    L+  G+   R ++ +G+       ++D   
Sbjct: 165 EGHTDST---GSDSYNQLLSERRASSVRDFLLNQGIEPRR-TRATGYGERYPIASNDTAA 220

Query: 329 SA--NRRIDILVEDRQ 342
               NRR+++ +   Q
Sbjct: 221 GREQNRRVELTLVPMQ 236


>gi|237654130|ref|YP_002890444.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|237625377|gb|ACR02067.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 222

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +Q    ++    +G          + +TT   + + I    +   FD       P   
Sbjct: 78  QNMQKQRAEMEQATAGTGIG------ISQTTDNQLKVDIPADVS---FDVGRHAIKPNMR 128

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL ++   L       ++I GHTD++        N  LS++RA +    L++ GVS  R
Sbjct: 129 PVLDRLASTLNQHPVTTVTIIGHTDST---GSDAVNDPLSINRAAATRDYLVQRGVSAQR 185

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I  + G    +    +      + NRR++I +
Sbjct: 186 I-AVDGRGSRQPVADNSTASGRAMNRRVEIFI 216


>gi|238024317|ref|YP_002908549.1| hypothetical protein bglu_2g09050 [Burkholderia glumae BGR1]
 gi|237878982|gb|ACR31314.1| OmpA/MotB [Burkholderia glumae BGR1]
          Length = 236

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232
            +  E    +  + + + L  +   TL   +A  +  G           ++++D R    
Sbjct: 39  GMQLEASSRLADEIKQRQLETQRRKTLEQALAGPLAAG----------RVTLVDGRIGIS 88

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNW 285
              +F  +S    P+   +L+ +   L+       +++ + G  D            DNW
Sbjct: 89  GNVLFAVNSDQLQPQGRALLRSLAGPLSAYLRDRDQILMVSGFADDQQVHAGNARFADNW 148

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            LS +RA +  +  +++GV    +   + F   +     A +   + NRR++I    R
Sbjct: 149 ELSAERALTVTRAFIEAGVPAGSVFAAA-FGSEQPVSSNADEAGRAKNRRVEIAAVPR 205


>gi|310822654|ref|YP_003955012.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395726|gb|ADO73185.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 653

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           V  +  +     +       + + + +Q+            +K +    +    K +   
Sbjct: 434 VPGQPQTVEVALESMAQPATLSFSTTAQKKPVAATLRLSGPQKQELATSAAAPTKLVLPP 493

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
            +Y +  ++   +   +  +  +  A+  +  L       +   V     +  +L  +  
Sbjct: 494 GHYLVDVMAPGYLAQTREVQVAEGTAQSFAFDLKPAPKKKL---VTVADNKLALLQQVQ- 549

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                 F    ++    +  +L ++ +V+  +  + + +  HTD          N +LS 
Sbjct: 550 ------FADGKAVIQANSQPLLAQVVDVIVRNNIQRVRVEAHTDNQ---GNPAANLKLSQ 600

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +RA +    L +SG+   R+  + G+   R    +        NRR++ ++ ++
Sbjct: 601 ERAQAVATFLAQSGLDAARME-VQGYGDARPIAPNLTPRGKELNRRVEFIILEQ 653


>gi|262194964|ref|YP_003266173.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262078311|gb|ACY14280.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 623

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 22/275 (8%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G  D    P+  +       + E    N  + + G  +      R  +      +  Q 
Sbjct: 354 DGFADSDGCPDLDNDGDGIPDL-EDGAPNEPEDRDGFEDGDGVPDRDNDGDGINDD--QD 410

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK----KRLQDLA 196
                + T++  +  D C            ++    P   E + + + +    +      
Sbjct: 411 ACPLKAETQNGFQDDDGCPDVADSDGDGLADDVDACPEQAEDMDSFQDEDGCPEENDRDG 470

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTG--IL---ISIIDQRNTPMFDKSSSIPLPETIVV 251
             +         +          T+ G  +    I II+      F  + +  LP +  V
Sbjct: 471 DTVLDRQDTCPDEPGKPEFEGCPTKPGAALRDGSIEIIE---KVYFPNNQARILPRSFPV 527

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+++  VL +  +  + + GHTD    R     N +LS  RA S    L++ G++ +R+S
Sbjct: 528 LKEVARVLNNHPDIELRVEGHTDD---RGNDTYNRKLSQRRADSVVAFLVEQGIAAERLS 584

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              GF   R     AS      NRR++ ++ +  G
Sbjct: 585 A-KGFGEERPIADNASAQGRDQNRRVEFVITNGDG 618


>gi|315298823|gb|EFU58077.1| OmpA family protein [Escherichia coli MS 16-3]
          Length = 550

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           + I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|258621036|ref|ZP_05716070.1| outer membrane protein OmpA [Vibrio mimicus VM573]
 gi|262166295|ref|ZP_06034032.1| outer membrane protein A precursor [Vibrio mimicus VM223]
 gi|258586424|gb|EEW11139.1| outer membrane protein OmpA [Vibrio mimicus VM573]
 gi|262026011|gb|EEY44679.1| outer membrane protein A precursor [Vibrio mimicus VM223]
          Length = 322

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  +  + +  + +V+ V    T T          ++  F  +S+   P     L K+ 
Sbjct: 179 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 232

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L    +  + + GHTD++        N +LS  RA +  + L   GV   RI+   G 
Sbjct: 233 GYLNQYPQAKVEVVGHTDSN---GSEAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 288

Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338
                  ++        NRR+++++
Sbjct: 289 GESNPIASNATAEGREKNRRVELVI 313


>gi|77165990|ref|YP_344515.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|76884304|gb|ABA58985.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
          Length = 319

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P    +L K+ E +    +  I+I GHTD++     A  N RLS  RA +A
Sbjct: 215 FGFDSAKLSPNAHTILDKVVENMRTYPDLEITIAGHTDST---GNADYNQRLSQLRAEAA 271

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L   G+   R+  I G+   R   ++      + NRR+++
Sbjct: 272 MNYLASKGIDPSRMEAI-GYGEERPIASNSTKEGRAKNRRVEL 313


>gi|120555939|ref|YP_960290.1| hypothetical protein Maqu_3029 [Marinobacter aquaeolei VT8]
 gi|120325788|gb|ABM20103.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 217

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +  E   ++  +   ++  ++    L   + D + KG+    T     I I       +
Sbjct: 38  GIQLELSQSLAEEIEKREAEEQRRMALEQALEDPLTKGL---VTFRDGRIGIS---GNVL 91

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR--NIARDNWRLSLD 290
           F+ +S     E   VL+ +   L        E++ + G TD  P    N  +DNW LS  
Sbjct: 92  FELNSDQLQAEGEEVLESLIRPLQAYLEQHDELLMVSGFTDDLPMHPGNRYQDNWGLSAQ 151

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           RA +  + L + G+  DR+   + F  H   + +      + NRR++I    R
Sbjct: 152 RALTVTRTLTELGLPNDRVFAAA-FGPHHPAVPNVDAESRAQNRRVEISTVPR 203


>gi|110636612|ref|YP_676819.1| peptidoglycan-associated outer membrane protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279293|gb|ABG57479.1| peptidoglycan-associated outer membrane protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 239

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 221 RTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
              I I +I             FD +     PE    +  +   L  +    I I GHTD
Sbjct: 114 DQEIRIKLIRDYARIFTLDNVYFDVNKWNIKPECEPAIDNLYNSLTLNPNMHIEIAGHTD 173

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNS-AN 331
           +      A DN  LS  RA +    L++ G+   R+ +  G+  ++    +D P N   N
Sbjct: 174 SD---GDAHDNLVLSQRRAEAVMNHLIQKGLDPKRV-QAKGYGEYKPIAPNDSPQNKYRN 229

Query: 332 RRIDILVED 340
           RR ++ V D
Sbjct: 230 RRTEVRVLD 238


>gi|317494692|ref|ZP_07953104.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917294|gb|EFV38641.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 219

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           + ++G     TR G  I I++  N   FD SSS   P     L  +  VL    +  +++
Sbjct: 90  DKMRGTGVSVTRQGDNI-ILNMPNNVTFDSSSSTLKPAGANTLTGVAMVLKEYPKTAVNV 148

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            G+TD++        N RLS  RA S    L+  GV   R+ +  G        ++    
Sbjct: 149 VGYTDST---GSQDLNMRLSQQRADSVASALIVQGVEASRV-RTQGMGPANPIASNSTAE 204

Query: 329 --SANRRIDILV 338
             + NRR++I +
Sbjct: 205 GKAQNRRVEITL 216


>gi|238751686|ref|ZP_04613175.1| hypothetical protein yrohd0001_18130 [Yersinia rohdei ATCC 43380]
 gi|238710096|gb|EEQ02325.1| hypothetical protein yrohd0001_18130 [Yersinia rohdei ATCC 43380]
          Length = 575

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S      T V++  +  + A    +I + GHTD       ++ N  LSL RA 
Sbjct: 443 SLFDVGQSTLKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGESKSNQILSLKRAE 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKPNDTETGRALNRRVEISLVPQ 549


>gi|254487455|ref|ZP_05100660.1| OmpA family domain protein [Roseobacter sp. GAI101]
 gi|214044324|gb|EEB84962.1| OmpA family domain protein [Roseobacter sp. GAI101]
          Length = 221

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               I    N   ++    +L            S              L   +    +  
Sbjct: 22  EPGPIGGNPNDPNAKTRNGALIGAGAGAVIGALSKGDGNRAEGALAGALAGGAVGAGVGY 81

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              ++  DL +++ S             V+   T   +++++       +F   S+    
Sbjct: 82  TLDQQEADLRRQLDS------------NVIITNTGDRLIVTL---PQDILFATDSTTVQS 126

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
                L  +   +   +   + + GHTD+      A  N +LS  RA +   VL+ +GV 
Sbjct: 127 GMQSDLAALARNVNVYSNSTLQVIGHTDSV---GDASYNQQLSEGRANAVANVLIGNGVP 183

Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
            +RI  + G    +   +  +    + NRR++I++  
Sbjct: 184 RNRIQAV-GRGESQPVASNLNASGKAQNRRVEIVILP 219


>gi|182412224|ref|YP_001817290.1| OmpA/MotB domain-containing protein [Opitutus terrae PB90-1]
 gi|177839438|gb|ACB73690.1| OmpA/MotB domain protein [Opitutus terrae PB90-1]
          Length = 266

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 3/176 (1%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV--KGVLFETTRTG 223
             N + +    P   E+  A   +  +  L    S     L  D  +  K +  + T  G
Sbjct: 65  PSNSQSSRSQGPDKGERQRAKHNQMEMAFLNSVASDFYKTLRLDQDITDKPIEIQVTADG 124

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIAR 282
           + +++ D+   P+F  +++        V+Q +   +      ++I GHT A         
Sbjct: 125 LRLTVFDRARKPVFVGNTAEFTEWGRFVMQNLSWTVDRHKFRVTIDGHTKAQLDLGPGEY 184

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             W LS DRA +A + L+   V    I +++G+A  R      P   +N+RI + +
Sbjct: 185 TPWELSADRANAARRALVHYAVDPALIDRVTGYADTRPVEGESPEAESNQRITLSL 240



 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
                  + G+WK+ YADF+T +MA F+V+W I+A D     A  QYF    +  M A+
Sbjct: 2  ARKKAAAGHGGAWKVAYADFVTAMMALFMVLW-ISAQDQKILIATSQYFQNPFQAPMLAA 60

Query: 81 KGIFDEQNPPERS 93
           G+    +   RS
Sbjct: 61 SGVLPSNSQSSRS 73


>gi|83746716|ref|ZP_00943765.1| Hypothetical Protein RRSL_03628 [Ralstonia solanacearum UW551]
 gi|207721381|ref|YP_002251822.1| bacterial outer membrane protein [Ralstonia solanacearum MolK2]
 gi|207742640|ref|YP_002259032.1| bacterial outer membrane protein [Ralstonia solanacearum IPO1609]
 gi|83726669|gb|EAP73798.1| Hypothetical Protein RRSL_03628 [Ralstonia solanacearum UW551]
 gi|206586540|emb|CAQ17127.1| bacterial outer membrane protein [Ralstonia solanacearum MolK2]
 gi|206594034|emb|CAQ60961.1| bacterial outer membrane protein [Ralstonia solanacearum IPO1609]
          Length = 209

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + E L   
Sbjct: 73  SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAMIKPSFRGPLDSVAETLTQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   S+ GHTD++        N  LS  RA S    L   GV+ +R++   G    +  
Sbjct: 130 PELAASVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARNRLTA-EGRGQTQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   + NRR++I ++  QG
Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209


>gi|255622212|ref|XP_002540262.1| conserved hypothetical protein [Ricinus communis]
 gi|223497476|gb|EEF22121.1| conserved hypothetical protein [Ricinus communis]
          Length = 160

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +S+I LPE+   L  + +V+       + I GHTD          N  LS  RA
Sbjct: 49  RILFQANSAIILPESYADLDIVYDVVKEWGNDKVEIAGHTDKRNTSKEKY-NLVLSEKRA 107

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            +    L+K G+   R+  + G+   +    +DP   N ANRR++++
Sbjct: 108 KAVADYLVKKGMDAQRLV-VKGYGFSQPIAENDPVSGNDANRRVEVI 153


>gi|118474477|ref|YP_891591.1| outer membrane fibronectin-binding protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413703|gb|ABK82123.1| outer membrane fibronectin-binding protein [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 345

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 18/157 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILIS------IIDQRNTPMFDKSS 241
           ++      + +   + D    GVL        T  G+++       +I       F   S
Sbjct: 187 EEQPAPAPTKIVPAIGDEDGDGVLDNVDRCPGTPKGVVVDEYGCEKVIRLSLKANFAFDS 246

Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   PE    ++++ +V+  +    + + GHTD++        N +LS+ RA +    L 
Sbjct: 247 AKVTPEYEAKIKEVADVMVANPEYRVILEGHTDST---GPEDYNKKLSVKRADAVAATLE 303

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           K GVS+++I+ + GF   +   ++      + NRR++
Sbjct: 304 KMGVSKNKITTV-GFGEEQPIASNATKEGRAENRRVE 339


>gi|319957287|ref|YP_004168550.1| ompa/motb domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419691|gb|ADV46801.1| OmpA/MotB domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 351

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
           G++   T  G ++++       +FD +  I  PE    L  + + +       I + G+T
Sbjct: 228 GIIVRKTSEGSMLTV---PEKVLFDFNKFILKPEAKKALDVVADYIRSHPARQIVVTGYT 284

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D       A  N RLSL RA S    LM  G  + ++ KI G          A++   + 
Sbjct: 285 DN--IGTDAY-NLRLSLQRAQSVADYLMDCGKVDPKLFKIVGKGKANPIADNATEEGRAK 341

Query: 331 NRRIDI 336
           NRR++I
Sbjct: 342 NRRVEI 347


>gi|167035287|ref|YP_001670518.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861775|gb|ABZ00183.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 239

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDN 284
           + I+D     MF   S+   P     LQ +  ++ + +   + + GHTD          N
Sbjct: 127 VIILDDNGAVMFAFDSADLTPAAQQRLQGLVAKLDSPTVAKVRVIGHTDNV---GSDSYN 183

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             LS  RA S  + L+  G+   +++   G         ++     + NRR+++ +
Sbjct: 184 QALSERRASSVAEYLIGQGLEAGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238


>gi|300690749|ref|YP_003751744.1| outer membrane lipoprotein [Ralstonia solanacearum PSI07]
 gi|299077809|emb|CBJ50447.1| putative outer membrane lipoprotein [Ralstonia solanacearum PSI07]
          Length = 209

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + E L   
Sbjct: 73  SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLTQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   ++ GHTD++        N  LS  RA S    L   GV+ +R++   G    +  
Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARNRLTA-EGRGQTQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   S NRR++I ++  QG
Sbjct: 186 GDNATEAGRSQNRRVEIYLKPIQG 209


>gi|59713685|ref|YP_206460.1| outer membrane protein [Vibrio fischeri ES114]
 gi|59481933|gb|AAW87572.1| outer membrane protein [Vibrio fischeri ES114]
          Length = 208

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 17/198 (8%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +SL   + K K+     D E          +      + L     +   D  ++++  L+
Sbjct: 21  SSLLDIAPKTKEDAPFPDFENPETAPVEE-METSEMTRALTGPNGELKDDDMRQVAQQLT 79

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            +           +     ++ISI ++ +   F  + +   P    +L K+  V+A   E
Sbjct: 80  NMGIQ------YHKVGNDQLVISIQEKVH---FSSAKAELTPLARSLLNKLIVVMASKPE 130

Query: 265 VISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +  +  GHTD          N  LS  R+    + L+ + ++  ++    GF  +     
Sbjct: 131 LALVLDGHTD---VTGDPIKNQNLSEQRSNEVRRYLLANKLNASQLYS-RGFGEYLPLCD 186

Query: 324 SDPMNSA--NRRIDILVE 339
           +D +     NRR++I + 
Sbjct: 187 NDTILGRKCNRRVEITIL 204


>gi|197336770|ref|YP_002158098.1| outer membrane protein [Vibrio fischeri MJ11]
 gi|197314022|gb|ACH63471.1| outer membrane protein [Vibrio fischeri MJ11]
          Length = 208

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 17/198 (8%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +SL   + K K+     D E          +      + L     +   D  ++++  L+
Sbjct: 21  SSLLDTAPKTKEDAPFPDFENPETAPVEE-METSEMTRALTGPNGELKDDDMRQVAQQLT 79

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            +           +     ++ISI ++ +   F  + +   P    +L K+  V++   E
Sbjct: 80  NMGIQ------YHKVGNDQLVISIQEKVH---FSSAKAELTPLARSLLNKLIVVMSSKPE 130

Query: 265 VISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +  +  GHTD          N  LS  R+    + L+ + ++  ++    GF  +     
Sbjct: 131 LALVLDGHTD---VTGDPIKNQNLSEQRSNEVRRYLLANKLNASQLYS-RGFGEYLPLCD 186

Query: 324 SDPMNSA--NRRIDILVE 339
           +D +     NRR++I + 
Sbjct: 187 NDTILGRKCNRRVEITIL 204


>gi|254428835|ref|ZP_05042542.1| Rickettsia 17 kDa surface antigen family [Alcanivorax sp. DG881]
 gi|196195004|gb|EDX89963.1| Rickettsia 17 kDa surface antigen family [Alcanivorax sp. DG881]
          Length = 221

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  I I++      F   S+        VL  + EVL   
Sbjct: 83  VQEAKLRQKLEGAGVSVTRDGENI-ILNMPGNLTFATDSTNVKSSFDPVLDAVSEVLNEY 141

Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            + +I + GHTD++      R N  LS  RA +    L   GV + R+  + GF   +  
Sbjct: 142 KSTMIQVAGHTDST---GGDRYNLLLSQQRAQAVSNKLSGYGVEQVRLDTV-GFGETQPI 197

Query: 322 IASDPMNSA--NRRIDILVED 340
            +++  +    NRR+++ +  
Sbjct: 198 ASNNTASGREQNRRVELTLLP 218


>gi|238792655|ref|ZP_04636287.1| hypothetical protein yinte0001_22390 [Yersinia intermedia ATCC
           29909]
 gi|238728011|gb|EEQ19533.1| hypothetical protein yinte0001_22390 [Yersinia intermedia ATCC
           29909]
          Length = 575

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S+     T V++  +  + A    +I + GHTD        + N  LSL RA 
Sbjct: 443 SLFDVGQSMLKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQALSLKRAE 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R   ++D     + NRR++I +  +
Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 549


>gi|238024505|ref|YP_002908737.1| outer membrane protein [Burkholderia glumae BGR1]
 gi|237879170|gb|ACR31502.1| Outer membrane protein [Burkholderia glumae BGR1]
          Length = 602

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++   +  +FD   S   P  T  ++  +  + AH  + I + G+TD          N +
Sbjct: 481 VVTLDSMSLFDSGRSQLKPGSTRAMVGALEMIKAHPDKRILVAGYTDN---SGNPNRNLK 537

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS  RA +    L+++ G+   +   I G+   R   ++D     + NRR++I +  
Sbjct: 538 LSTARARAVRDWLIEASGIPTTQF-AIQGYGDTRPIASNDTPEGRARNRRVEITLVP 593


>gi|49079216|gb|AAT49867.1| PA1041 [synthetic construct]
          Length = 211

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   SS         L  I E L    ++  +SI GHTD+         N +LS  RA +
Sbjct: 105 FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 161

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
               L+ +GV    I  + G    +    +      + NRR++IL++ R+G
Sbjct: 162 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIK-REG 211


>gi|110834272|ref|YP_693131.1| OmpA family protein [Alcanivorax borkumensis SK2]
 gi|110647383|emb|CAL16859.1| OmpA family protein [Alcanivorax borkumensis SK2]
          Length = 221

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  I I++      F   S+   P    VL+ + EVL   
Sbjct: 83  VQEAKLRQKLEGAGVSVTRDGENI-ILNMPGNLTFATDSTDVKPSFDPVLEAVAEVLKEY 141

Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            + +I + GHTD++      R N  LS  RA +    L   GV + R+  + GF   +  
Sbjct: 142 KSTMIQVAGHTDST---GGDRYNLLLSQQRAQAVSNKLSAFGVEQVRLDPV-GFGETQPI 197

Query: 322 IASDPMNSA--NRRIDILVED 340
            ++   +    NRR+++ +  
Sbjct: 198 ASNSSASGREQNRRVELTLLP 218


>gi|49188511|ref|YP_025325.1| OmpA [Pseudomonas alcaligenes]
 gi|5123490|gb|AAD40344.1|U88088_22 OmpA [Pseudomonas alcaligenes]
          Length = 220

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             +KG   +  R G  I I+       F    +   P     L ++     +  +  + +
Sbjct: 84  EQMKGSGVQVERQGDEIVIV-MPGAITFATGKAEIQPNFANTLNQLAGSFRNYPDSRLIV 142

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD+         N  LS  RA S  Q L  +GV  DRI  + G   ++   ++    
Sbjct: 143 TGHTDSV---GSYEANELLSQRRAQSVAQFLRGNGVQTDRIE-VIGAGPNQPVASNATAE 198

Query: 327 MNSANRRIDILVEDR 341
             + NRR++I +  R
Sbjct: 199 GRAQNRRVEIKLAPR 213


>gi|213419089|ref|ZP_03352155.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 126

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%)

Query: 31  GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           GSWKI YADFMT +MAFFLVMW+I+ +       I +YF       +T    I + ++P 
Sbjct: 1   GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSPI 60

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
                +      +     N  +LK      +    R + +    S+ +
Sbjct: 61  PGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPK 108


>gi|59713771|ref|YP_206546.1| OmpA family domain-containing protein [Vibrio fischeri ES114]
 gi|197337822|ref|YP_002158145.1| OmpA family protein [Vibrio fischeri MJ11]
 gi|59482019|gb|AAW87658.1| OmpA family domain protein [Vibrio fischeri ES114]
 gi|197315074|gb|ACH64523.1| OmpA family protein [Vibrio fischeri MJ11]
          Length = 184

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
              S +++  +     +       +  L   V ++I        T   I+I +   ++  
Sbjct: 19  QSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGS---VAQTNEEIIILLNGDKS-- 73

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S     E+ +VL ++ ++L    E  + I GHTD+   R   + N  LS  RA S
Sbjct: 74  -FDSGSIEIKNESKLVLSQLAKLLNDKPESEVFIAGHTDS---RGSKKFNMSLSNQRADS 129

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
              +L ++GV  +RI+   GF          +      NRRI+I +  
Sbjct: 130 VLALLEENGVDGNRIN-TYGFGESEPIATNINAEGRKKNRRIEIRITP 176


>gi|347159|gb|AAC36902.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K GV+  RI+ + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315


>gi|262170812|ref|ZP_06038490.1| outer membrane protein A precursor [Vibrio mimicus MB-451]
 gi|261891888|gb|EEY37874.1| outer membrane protein A precursor [Vibrio mimicus MB-451]
          Length = 322

 Score = 83.4 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  +  + +  + +V+ V    T T          ++  F  +S+   P     L K+ 
Sbjct: 179 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 232

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L    +  + + GHTD++        N +LS  RA +  + L   GV   RI+   G 
Sbjct: 233 GYLNQYPQAKVEVVGHTDSN---GSKAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 288

Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338
                  ++        NRR+++++
Sbjct: 289 GESNPIASNATAEGREKNRRVELVI 313


>gi|116249829|ref|YP_765667.1| hypothetical protein RL0063 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254477|emb|CAK05551.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 418

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S   P    +L  I   L +     + I GHTDA      A  N RLSL+RA + 
Sbjct: 81  FGVGKSTLQPGAETLLDDIATALKNFPDWSLRIVGHTDA---SGNAETNERLSLERANAI 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L++ GV+ DR+   +G    R   +++     + NRR++++
Sbjct: 138 KAALVERGVNTDRLLA-AGAGQTRPIASNETAEGKALNRRVELV 180


>gi|110636904|ref|YP_677111.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279585|gb|ABG57771.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 620

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 103/305 (33%), Gaps = 39/305 (12%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPP--------------ERSSQNKIDLSIDEHITKNSV 111
             Y +P GK L  +SKG                        +  + ++ + D+     S 
Sbjct: 324 APYMHPDGKTLYFSSKGHSTMGGYDVFKTTKLANGVWSTPENMGSPVNTAGDDVYFVLSA 383

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI---- 167
           D KIG  +  K+    + +I+ +         + +L +         K T+   +I    
Sbjct: 384 DGKIGYYSSNKEGGFGKQDIYSIRMPAAENEPELALLKGKILDDQTGKPTEASITITDNA 443

Query: 168 ----------NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
                     N E   +L  L   K   +  +K       +  +  +        + +  
Sbjct: 444 TKEIVARYRSNSETGEYLLSLPAGKNYGIAIEKEGHLFYSENMTLNNTNGFKEYKQDITL 503

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASP 276
            T +T   I +        FD   +    E+   L K+ ++L ++    I I GHTD   
Sbjct: 504 VTIKTSGKIILR----NIFFDSGKATIRLESTAELLKLVDLLKNNPTLRIEIAGHTDNI- 558

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
                  N +LS +RA +    L  +G+S  R+    G+   +    +  D     NRR 
Sbjct: 559 --GDETLNQKLSEERAKNVVTFLTANGISAGRLVA-KGYGSSQPVAPNTTDTGRQQNRRT 615

Query: 335 DILVE 339
           +I + 
Sbjct: 616 EIKIL 620


>gi|304398526|ref|ZP_07380399.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304354031|gb|EFM18405.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 570

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD   ++     T +++  +  + A    +I + GHTD +      + N  
Sbjct: 432 IVRLDSMSLFDSGKAVLKTGSTRMLVNSLVGIKAKPGWLIVVSGHTDNT---GNPQLNQT 488

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA +    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 489 LSLRRAAAVRDWMRDTGDVPESCFAVQGYGESRPVATNDTPAGRALNRRVEISLVPQ 545


>gi|300113303|ref|YP_003759878.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299539240|gb|ADJ27557.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113]
          Length = 283

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P    +L K+ E +       ++I G+TD+    N    N RLS  RA +A
Sbjct: 181 FGFDSAKLSPNAHTILDKVAEKMRAHPNLKVTITGYTDS--IGNADY-NMRLSKLRAEAA 237

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L   G+   R+  + G    R   ++      + NRR+++
Sbjct: 238 MDYLSSEGIDPSRMEAV-GRGEERPVASNSTKEGRAKNRRVEL 279


>gi|253582681|ref|ZP_04859902.1| outer membrane protein [Fusobacterium varium ATCC 27725]
 gi|251835551|gb|EES64091.1| outer membrane protein [Fusobacterium varium ATCC 27725]
          Length = 216

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    + ++ G  +++        F   SS  +P     L  I  VL    E  I + G
Sbjct: 88  LKNTEVQVSQKGDNLNLN-LPGGVTFATDSSNIVPSFYGPLNSIATVLVQYPETRIIVNG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329
           +TD       A  N  LS  RA S    L++ GVS  RIS +  G  + R   ++    +
Sbjct: 147 YTDNV---GSASYNITLSEKRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 203

Query: 330 ANRRIDILVED 340
            NRR+++ +  
Sbjct: 204 ENRRVELEILP 214


>gi|170722410|ref|YP_001750098.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169760413|gb|ACA73729.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 383

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 236 MFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S    P +  +L   +  + A    +I I GH DA   R  A  N  LS  RA +
Sbjct: 263 LFDPGSDELKPGSTKLLVNALVGIKAQPGWLIVISGHADA---RGDAAKNLDLSRARASA 319

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               + + G   D    + G A  +   ++D     + NRR+DI +  +
Sbjct: 320 VRDWMQRMGDIPDSCFAVQGVAASQPVSSNDTVNGRAENRRVDIRLVPQ 368


>gi|17548982|ref|NP_522322.1| lipoprotein [Ralstonia solanacearum GMI1000]
 gi|17431232|emb|CAD17912.1| putative outer membrane protein [Ralstonia solanacearum GMI1000]
          Length = 277

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 84/283 (29%), Gaps = 22/283 (7%)

Query: 62  KKAIEQYFNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
             AI   F P        +    G       P   +       +   +    +     + 
Sbjct: 3   LDAIRYGFRPATVLAAALAAACLGTLPAHAAPGDPAPASATSPVPGPVVAGGMVPDEATK 62

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
                  R       + +  +  +  +         K L              +     +
Sbjct: 63  ASVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVSRGQLNIDGTQVAV 122

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTP 235
             +     +R++   D+A  + ++ +   GL    + +  L + T    +I         
Sbjct: 123 HGDVQNEAQRQQLASDMATTLGASYTIKNGLRVAAVSEQSLLDQTLANRIIE-------- 174

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  S+   P+   +L ++  VL       I I GHTD          N  LS  RA +
Sbjct: 175 -FETGSATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAET 230

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRID 335
               L+  G     ++ I G    +     A+D   S NRRI+
Sbjct: 231 VKNYLISKGAEPGTLTAI-GVGPDQPVAPNATDEGRSRNRRIE 272


>gi|299069126|emb|CBJ40378.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia
           solanacearum CMR15]
          Length = 279

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 22/283 (7%)

Query: 62  KKAIEQYFNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
             AI+  F P        +    G       P   +       +   +    +     + 
Sbjct: 5   LDAIKYGFRPATVLAAALAAACLGTLPAHAAPGDPAPVSAASPVPGQVVAGGMVPDEATK 64

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
                  R       + +  +  +  +         K L              +     +
Sbjct: 65  ANVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVSRGQLNIDGTQVAV 124

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTP 235
             +     +R++   D+A  + ++ +   GL    + +  L + T    +I         
Sbjct: 125 HGDVQNEAQRQQLASDMATTLGASYTIKNGLRVAAVSEQSLLDQTLANRIIE-------- 176

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  S+   P+   +L ++  VL       I I GHTD          N  LS  RA +
Sbjct: 177 -FETGSATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAET 232

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRID 335
               L+  G     ++ I G    +     A+D   S NRRI+
Sbjct: 233 VKSYLISKGAEPGTLTAI-GVGPDQPVAPNATDEGRSRNRRIE 274


>gi|170723276|ref|YP_001750964.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169761279|gb|ACA74595.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 262

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S +     +    N   L +  Q+       T+D++   +      +E+  +K+      
Sbjct: 21  SHDPNANLESARTNFSSLQSDPQASKIAALETKDAQDWLNKADKAYMEREDSKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRSAENELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +      +  + K+ + L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSSALPNVTKLAQFLQENPERKVIVEGYTDSV---GSANYNQS 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           LS  RA +    L+++GV   RI    G+         +S+   + NRR+++ + +
Sbjct: 194 LSERRAGAVRMALVRAGVDPARIVA-QGYGKEYPVADNSSNSGRAQNRRVEVTISN 248


>gi|241759693|ref|ZP_04757793.1| inner membrane lipoprotein YiaD [Neisseria flavescens SK114]
 gi|241319701|gb|EER56097.1| inner membrane lipoprotein YiaD [Neisseria flavescens SK114]
          Length = 226

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
               E  R G  I ++   N   F   S+    +    L    + L    +  ++I GHT
Sbjct: 90  NTNIEVERQGNQIKLVMPENVT-FATGSAALSGQAQSALSVAAQTLVQYPDTTLTINGHT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D +        N  LS +RA S    L   GVS  R+    G+   +   ++      + 
Sbjct: 149 DNT---GNDAINEPLSRNRAESVAIFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204

Query: 331 NRRIDILVEDRQ 342
           NRR++IL+   Q
Sbjct: 205 NRRVEILINPDQ 216


>gi|254524919|ref|ZP_05136974.1| outer membrane protein [Stenotrophomonas sp. SKA14]
 gi|219722510|gb|EED41035.1| outer membrane protein [Stenotrophomonas sp. SKA14]
          Length = 363

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 254 FDFDKSNLRPDAVAILGEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 310

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 311 YNYLTKNGVDAGRLIGPVGYGKSRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 363


>gi|170722426|ref|YP_001750114.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169760429|gb|ACA73745.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 576

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +F+  S+   PE+   L      + A    +I I GHTDA+        N RLS  RA 
Sbjct: 446 SLFNSGSAQLKPESTKFLVNAFAGIKAQPGWLIVITGHTDAT---GSDEQNLRLSRARAA 502

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
           + +  +   G   +    + G        ++D     S NRR++I +    G
Sbjct: 503 AVHDWIQHMGDIPNNCFAVQGLGASEPVASNDTEQGRSTNRRVEIRLVPEAG 554


>gi|162452165|ref|YP_001614532.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161162747|emb|CAN94052.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 467

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++     +   L+ + ++L       + I GHTDA      A  N  LSL RA   
Sbjct: 364 FQFGTTELTEASRPKLEALADILDAYPTARVRIEGHTDAV---GGAEGNRSLSLARAQEV 420

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              L    ++ DRI  ++G   ++    +D     + NRRID+ V  R
Sbjct: 421 RNELTARQIAPDRIE-VAGMGANQPVAPNDTAGGRAQNRRIDVTVLSR 467


>gi|327395890|dbj|BAK13312.1| inner membrane lipoprotein YiaD precursor [Pantoea ananatis
           AJ13355]
          Length = 237

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 100 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSSLKPAGANTLTGVAMVLKEY 158

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRL 320
            +  +++ GHTD++  R +   N RLS  RA S    L+  GV+ DR+  + +G      
Sbjct: 159 PKTAVNVVGHTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLHTRGAGPDSPVA 215

Query: 321 KIASDPMNSANRRIDILV 338
             +++   + NRR++I +
Sbjct: 216 TNSTEAGKAQNRRVEITL 233


>gi|320106074|ref|YP_004181664.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319924595|gb|ADV81670.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4]
          Length = 524

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 92/253 (36%), Gaps = 9/253 (3%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           N  +     K D  ++    + +V     +     + +  E     +   Q +E      
Sbjct: 264 NADDMDGSKKRDEKMEITYAREAVQRAEDARLSSIRKRIAEERQAEVDARQTAEAQAQQS 323

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
              +++ +        E   +            +   A        D A++    L   +
Sbjct: 324 AMAAQQSQLDAAKAQAEAERSAAAKAQADAQRAQAEAAAANANASADAAREAVVKLRQQM 383

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
            D +   +  + T  G+++S+ D     +FD        +T + L K+  ++A   +  +
Sbjct: 384 RDQLNSILATKETPRGLVVSLSD----VLFDTGKYTLKGDTKISLAKVAVIVASHPDLKL 439

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASD 325
            + G+TD+         N +LS +RA S    L+ + V+   I+ +  G +H      + 
Sbjct: 440 QVEGYTDSV---GSDDLNQKLSENRANSVKAFLIANSVNPGNITSLGYGKSHPVADNGTS 496

Query: 326 PMNSANRRIDILV 338
              + NRR+++++
Sbjct: 497 AGRAQNRRVELVI 509


>gi|227824113|ref|YP_002828086.1| putative outer membrane protein, OmpA/MotB domain protein
           [Sinorhizobium fredii NGR234]
 gi|227343115|gb|ACP27333.1| putative outer membrane protein, OmpA/MotB domain protein
           [Sinorhizobium fredii NGR234]
          Length = 221

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   F       +P     L  +  VL    +  I + G
Sbjct: 91  LQGTGISVTRQGDRI-ILNMPSNITFATDRDQVIPPFYPTLDSVAIVLRKYNKTLIDVDG 149

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           HTD++     A  N  LS  RA S    L   G+ + RI    G+   R   ++  +   
Sbjct: 150 HTDST---GSAAHNQDLSERRAASVANYLGSRGIDQRRI-STMGYGMERPVASNSSEAGR 205

Query: 329 SANRRIDILVED-RQG 343
           + NRR++I +   +QG
Sbjct: 206 AQNRRVEISIAPIKQG 221


>gi|262378528|ref|ZP_06071685.1| OmpA/MotB [Acinetobacter radioresistens SH164]
 gi|262299813|gb|EEY87725.1| OmpA/MotB [Acinetobacter radioresistens SH164]
          Length = 485

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        +L +   +L     V+ +++GHTDA        +N  LS+ RA + 
Sbjct: 365 FASGSAQVPDVNKPILDQAAALLQRVPNVVVTVKGHTDAE-GSEAVNNN--LSVQRAQAV 421

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              L+  GVS  ++ +  G+   +    +        NRRI+  + +
Sbjct: 422 VNYLVSRGVSPSKL-QALGYGQDQPVTDNATSQGKFQNRRIEFEILN 467


>gi|308270955|emb|CBX27565.1| hypothetical protein N47_H23870 [uncultured Desulfobacterium sp.]
          Length = 229

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           M R++     A   S   S      ++     ++++    +  +  ++  ++  +SS   
Sbjct: 73  MDRQEAAMRQALADSEAASINREQQVLAQATADSSKKVRDVLTVTFKSDFLYAVNSSTLF 132

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           P     L ++ +V+    +  I + GHTD++     A  N +LS  RA +    L+  GV
Sbjct: 133 PGAYDELDRVAKVINQYPDTRIQVGGHTDST---GSAEYNQKLSEQRAQAVKNALVSRGV 189

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           +  RIS I G+  ++   +++       NRR++I +   Q
Sbjct: 190 NASRISAI-GYGENKSIASNETEAGRQQNRRVEIRIIPNQ 228


>gi|115376409|ref|ZP_01463646.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366616|gb|EAU65614.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 723

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           V  +  +     +       + + + +Q+            +K +    +    K +   
Sbjct: 504 VPGQPQTVEVALESMAQPATLSFSTTAQKKPVAATLRLSGPQKQELATSAAAPTKLVLPP 563

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
            +Y +  ++   +   +  +  +  A+  +  L       +   V     +  +L  +  
Sbjct: 564 GHYLVDVMAPGYLAQTREVQVAEGTAQSFAFDLKPAPKKKL---VTVADNKLALLQQVQ- 619

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                 F    ++    +  +L ++ +V+  +  + + +  HTD          N +LS 
Sbjct: 620 ------FADGKAVIQANSQPLLAQVVDVIVRNNIQRVRVEAHTDNQ---GNPAANLKLSQ 670

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +RA +    L +SG+   R+  + G+   R    +        NRR++ ++ ++
Sbjct: 671 ERAQAVATFLAQSGLDAARME-VQGYGDARPIAPNLTPRGKELNRRVEFIILEQ 723


>gi|256820114|ref|YP_003141393.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581697|gb|ACU92832.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 456

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E T   +   + D   T +FD + +   P++  VL +I +VL        SI G+TD   
Sbjct: 336 EVTEE-VQKKLNDFARTILFDVNKATIRPQSATVLNQIVDVLNQYKNAKFSIEGYTD--- 391

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
                  N +LS +RAYS    L++ G+ E R++   GF   +   ++        NRR+
Sbjct: 392 ISGKRDKNQKLSENRAYSVKAYLIEKGIDEGRLTA-KGFGPDKPIASNKTKKGRELNRRV 450

Query: 335 DI 336
           +I
Sbjct: 451 EI 452


>gi|255319448|ref|ZP_05360662.1| outer membrane protein [Acinetobacter radioresistens SK82]
 gi|255303388|gb|EET82591.1| outer membrane protein [Acinetobacter radioresistens SK82]
          Length = 486

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        +L +   +L     V+ +++GHTDA        +N  LS+ RA + 
Sbjct: 366 FASGSAQVPDVNKPILDQAAALLQRVPNVVVTVKGHTDAE-GSEAVNNN--LSVQRAQAV 422

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              L+  GVS  ++ +  G+   +    +        NRRI+  + +
Sbjct: 423 VNYLVSRGVSPSKL-QALGYGQDQPVTDNATSQGKFQNRRIEFEILN 468


>gi|209550136|ref|YP_002282053.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535892|gb|ACI55827.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 221

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       P     L  +  VL        I + 
Sbjct: 91  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+  
Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|110637988|ref|YP_678195.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280669|gb|ABG58855.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 517

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
             + + +       G  + +    N   FD S S    E+   L ++  +L ++    I 
Sbjct: 390 QEVKQDLYLVPVEIGQTVQL----NNIFFDVSKSTLRQESYAELDRLYLILQNNPVMEIE 445

Query: 268 IRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I GHTD    P  N+      LS DRA +    L+K G++  RI    GF   +  +++D
Sbjct: 446 IDGHTDNVGDPIINMQ-----LSNDRANAVKDYLLKKGIAPGRIV-TKGFGGTKPIVSND 499

Query: 326 PMNSA--NRRIDILVE 339
                  NRR++  + 
Sbjct: 500 TEELKKLNRRVEFTIL 515


>gi|227115434|ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 505

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + R + LAK        +    +       T   G++  + D     MFD +S+    + 
Sbjct: 78  QNREEALAKIAQEENIAMTTRALQSQEKSGTETVGLVAQVQDS---GMFDTNSAQLSTDG 134

Query: 249 IVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           +  ++KI   +     + VI + GHTDA+     A  N RLS  RA +  +VL ++G+S 
Sbjct: 135 LRQVKKIATAMKEGDQSGVILVVGHTDAT---GSAEWNQRLSEQRAQNVGRVLEQAGLSA 191

Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337
            ++  + +G A      A+    +ANRR++I+
Sbjct: 192 QKLYFQGAGSARPVADNATVTGRTANRRVEIV 223


>gi|209522383|ref|ZP_03270996.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209497180|gb|EDZ97422.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 150

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272
           G    I +Q +  +         FD SS    P    VL ++ + L  + EV+ S+ GHT
Sbjct: 18  GTGTQITEQPDGSLKLNIPSSVTFDTSSYTIKPSFAPVLDQLAQTLQQNPEVVASVVGHT 77

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++      + N  LS++RA S    L + G++  R+S  +G   ++    ++     +A
Sbjct: 78  DST---GSLQYNQTLSVNRAESVTGYLTQRGIAPQRLSA-TGMGPNQPIADNNTEAGRAA 133

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 134 NRRVEIYL 141


>gi|148254500|ref|YP_001239085.1| putative outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Bradyrhizobium
           sp. BTAi1]
 gi|146406673|gb|ABQ35179.1| putative outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Bradyrhizobium
           sp. BTAi1]
          Length = 707

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLD 290
           +    FD  S+    E++ +L  I  V        I I GHTD         DN  LS  
Sbjct: 601 KGRIRFDTGSAELSRESLALLDHIVVVAQRCKDAEIVIEGHTDNV---GDEEDNMDLSKR 657

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           RA +    + ++G+   R++  +G+   R   ++D     + NRRI+ +V+
Sbjct: 658 RAVAVVGYIGEAGIDTSRMTS-AGYGQTRPIASNDTAEGRAQNRRIEFVVK 707


>gi|254411320|ref|ZP_05025097.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181821|gb|EDX76808.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
          Length = 293

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 89/259 (34%), Gaps = 18/259 (6%)

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           F  +  PE+    K+    +E +   S      S  +          +       Q    
Sbjct: 50  FYPRTNPEKPFFLKMASHFEEQMPVVSPHTTPTSIPEPTGSPPQLTPVQRQQVQAQLTQL 109

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           +  L   SE    L       +     E   L  ++ +        +         ++T+
Sbjct: 110 QGQLRSLSEGVATLEVQLGSSRPNESLE-ARLQAIALQLEGVQPPPEEATSNGNNPNATV 168

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHS 262
               +D+       + T            +  +F+ ++S+  PE  ++L KI  ++  + 
Sbjct: 169 MAASSDSFGSSQTLKVT----------LPSDVLFEGNNSLLRPEAGLILDKIIADLRNYP 218

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  I I  HTD+        DN  LS  RA +  Q   ++   + R   + G+   R  +
Sbjct: 219 SSTIRIAAHTDSQ---GEPEDNRELSFRRAKAVEQYFARALGDDYRWL-VVGYGEIRPLV 274

Query: 323 ASDPMN--SANRRIDILVE 339
           A+D       NRRI+I VE
Sbjct: 275 ANDTDANQQRNRRIEISVE 293


>gi|197117628|ref|YP_002138055.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
 gi|197086988|gb|ACH38259.1| OmpA family outer membrane protein, OprF domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 434

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P+    L+ + + L         I GHTD          N +LS  RA + 
Sbjct: 328 FDTNKADLKPQYRPELKALADFLNEFPNATGVIEGHTDNV---GPKALNMKLSQSRADTI 384

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
              L+K  G++ +RI  + G+   +   ++      + NRRI+
Sbjct: 385 RNSLIKEFGIAPERIKAV-GYGPTKPVASNKDKAGKAKNRRIE 426


>gi|310816653|ref|YP_003964617.1| flagellar motor protein [Ketogulonicigenium vulgare Y25]
 gi|308755388|gb|ADO43317.1| flagellar motor protein [Ketogulonicigenium vulgare Y25]
          Length = 510

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 98/267 (36%), Gaps = 29/267 (10%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
              D ++ +   + ++         ++Q    +  +   + + Q+   +N L  D +   
Sbjct: 225 GARDTALTDAEAQAALLALAQQQLSEQQEMSSQAQLQVEALNAQAAALRNQL-GDLQGLL 283

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D     D    +  E        +  ++ A +R+ R  + A++I             + +
Sbjct: 284 DASAVADSVAQVQIESLGSQLNAALARVAAEERRARTLEEAERIRLEEEARRLAEEAESL 343

Query: 216 L-FETTRTGILISIIDQRN-------------TPMFDKSSSIPLPETIVVLQKIGEVL-- 259
             + +   G L +++D ++               +F+  S+         +  +  +L  
Sbjct: 344 EQYRSEFFGSLRALLDGQDGVQIVGDRFVFSSEVLFEAGSATLSAAGDAEIANVAALLRR 403

Query: 260 ------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY-QVLMKSGVSEDRIS 310
                 +    VI + GHTD +P        +NW LS  RA S    ++   G+  +R++
Sbjct: 404 IASEIPSQIDWVIRVDGHTDNTPLSGTGEFANNWELSQARALSVVLYMIQNEGIPPNRLA 463

Query: 311 KISGFAHHRLKIASDP--MNSANRRID 335
             +GF  ++    ++     + NRRID
Sbjct: 464 A-NGFGEYQPLNPANTPEARAQNRRID 489


>gi|312963125|ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
 gi|311282636|gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6]
          Length = 229

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRT 222
           ++   E    +     E     +R K        +S  L+ + +D     +  L +    
Sbjct: 32  QNKAAEAAMAVEKQQMEAARQEERSKGDAAQRASLSKLLAAMQSDLQRTGETDLVDIDIQ 91

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVL----QKIGEVLAHST-EVISIRGHTDASPF 277
              +++ D      F + S+   P     L     ++   +       + + GHTD  P 
Sbjct: 92  NRRLTLPDNA----FARGSACITPAAQGALTLLSARVATFIKDYGQGQVLVEGHTDNLPV 147

Query: 278 R----------NIARDNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDP 326
                       +  DN+ LS  RA  A ++L+++   +  R   ++G+   R K   DP
Sbjct: 148 SRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQARRVVVAGYGDSRPKPGIDP 207

Query: 327 MNSANRRIDI 336
            ++ NRR+++
Sbjct: 208 ASALNRRVEV 217


>gi|51244080|ref|YP_063964.1| outer membrane protein F [Desulfotalea psychrophila LSv54]
 gi|50875117|emb|CAG34957.1| probable outer membrane protein F [Desulfotalea psychrophila LSv54]
          Length = 216

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    FD +S    P     + ++  VL       I + GHTD+         N +LS  
Sbjct: 111 KGETFFDTNSFTIKPGGWAEVNRVATVLNKYPNTNIKVAGHTDSL---GNEAYNQQLSER 167

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           RA +    L++ GV+ +RI  I G+       +S+   + NRR++I++   Q 
Sbjct: 168 RARAVKNALIQYGVNGNRIRAI-GYGESLPISSSN---AQNRRVEIVITPNQA 216


>gi|332667579|ref|YP_004450367.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336393|gb|AEE53494.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 239

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 18/225 (8%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
           K  Q+ + +    S+  +S   K +                +    N      +   +  
Sbjct: 19  KSAQKTQTSTGQRSDKPKSAKDKTTKGAVIGAAGGAVIGGIIGNKGNNTVIGAIIGAAAG 78

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             +      ++   AKK+   L              E    GI ++     +  +FD   
Sbjct: 79  GAVGAVIGSKMDKQAKKMEEDLGNTA--------TVERVGEGIKVTF---NSQLLFDFGK 127

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S  +      L+   E L  + +  + I GHTD          N  LS +RA +    L 
Sbjct: 128 SSLMESNKQTLESFAETLKQNPDTDLLIVGHTDNV---GSDAFNQSLSENRAAAVSNHLS 184

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
             GVS  R+ KI G    +  +A+      + NRR++I +   + 
Sbjct: 185 TFGVSSSRL-KIQGMGEKQPLVANTTESERAQNRRVEIAIIANEA 228


>gi|77919760|ref|YP_357575.1| outer membrane protein [Pelobacter carbinolicus DSM 2380]
 gi|77545843|gb|ABA89405.1| outer membrane protein [Pelobacter carbinolicus DSM 2380]
          Length = 224

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++   + +   L+G      V+G   +     + ++    ++  +FD +S          
Sbjct: 76  MEKQEQAMRQQLAG------VEGASIQRDAEVLAVTF---KSDVLFDVNSYSVKSGGYDE 126

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           LQ++  VL +  +  I I GHTD++      + N +LS  RA +   VL+  GV+  R+ 
Sbjct: 127 LQRVAGVLNNYPQTSIQIAGHTDST---GSEQYNMQLSRQRAEAVKNVLVGYGVAPARLM 183

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            + G+   +     A++     NRR+ I +   Q
Sbjct: 184 TV-GYGESKPIASNANEAGRQINRRVAITITPNQ 216


>gi|300703368|ref|YP_003744970.1| outer membrane lipoprotein [Ralstonia solanacearum CFBP2957]
 gi|299071031|emb|CBJ42340.1| putative outer membrane lipoprotein [Ralstonia solanacearum
           CFBP2957]
          Length = 209

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           S L  D    G        G + ++I    +   FD  S++  P     L  + E L   
Sbjct: 73  SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAMIKPSFRGPLDSVAETLTQH 129

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E   S+ GHTD++        N  LS  RA S    L   GV+  R++   G    +  
Sbjct: 130 PELAASVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARTRLTA-EGRGQTQPV 185

Query: 322 --IASDPMNSANRRIDILVEDRQG 343
              A++   + NRR++I ++  QG
Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209


>gi|260890151|ref|ZP_05901414.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260860174|gb|EEX74674.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 215

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           N +KG   +  RTG     +       FD +S +  P+    L  +  VL    +  I +
Sbjct: 83  NKLKGTGVDVKRTGEGEIKLTAPENITFDINSYVIKPQFRNTLDSVATVLKTYPDSTIVV 142

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD +   N A +N  LS++RA S    L   G+S  RI+   GF   +   ++  + 
Sbjct: 143 SGHTDTT--GNDAINN-PLSINRASSVESYLESQGISSSRITS-RGFGSKQPIASNSTEA 198

Query: 327 MNSANRRIDI-LVEDRQ 342
             + NRR++I ++ ++Q
Sbjct: 199 GRAQNRRVEIAIIANQQ 215


>gi|91777910|ref|YP_553118.1| putative flagellar motor protein motB [Burkholderia xenovorans
           LB400]
 gi|91690570|gb|ABE33768.1| Putative flagellar motor protein motB [Burkholderia xenovorans
           LB400]
          Length = 170

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 2   NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
           NS   + ++    +I+++ K   D   ++ G+WKI YAD +T +MAFFL+MW++ +T   
Sbjct: 6   NSRAPQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADCVTAMMAFFLLMWLLGSTSKY 65

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQ-NPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
            K+ IE YFN    +L+  ++G    + +  +   ++  D      +   S    +   +
Sbjct: 66  DKQGIEDYFNTPLSSLIGGNEGTAAARPSVVQGGGRDISDTRPATAVCIESNACALSFPS 125

Query: 120 QKKQYQRLENNIFYLS 135
                 R    +   S
Sbjct: 126 HGSPSFRCIRPVLRQS 141


>gi|162448339|ref|YP_001610706.1| outer membrane porin precursor [Sorangium cellulosum 'So ce 56']
 gi|161158921|emb|CAN90226.1| outer membrane porin precursor [Sorangium cellulosum 'So ce 56']
          Length = 608

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHT 272
           V    T T I+I          FD   +   P +  +L ++  VL    E   I ++GHT
Sbjct: 482 VAVRVTETEIVIL-----QQVQFDTGKATIRPVSNELLDEVAGVLKDHPEILKIEVQGHT 536

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D    R   + N +LS  RA S  + L++ G++  R+ +  G+          ++     
Sbjct: 537 DD---RGTRQFNTKLSQARAESVLKALVERGIAAQRL-QAKGYGPDVPIAENKTEAGRQK 592

Query: 331 NRRIDILVEDRQ 342
           NRR+   + +++
Sbjct: 593 NRRVQFNIIEKE 604


>gi|313677015|ref|YP_004055011.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312943713|gb|ADR22903.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 670

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  SS    E++  L+ I ++L +S +  + I GHTD     N    N  LS  R
Sbjct: 558 KNIFFDTGSSDLRTESLGELKVIKDLLTNSPDLRVQINGHTDN--VGNSVY-NKLLSKKR 614

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVE 339
           A S    L+ +G++ +R+    GF   +  +++D        NRR +I + 
Sbjct: 615 AQSVVDYLIANGINSERLEA-KGFGEEKPLVSNDDEIGGREINRRTEIEIL 664


>gi|331648547|ref|ZP_08349635.1| putative OmpA-family membrane protein [Escherichia coli M605]
 gi|330908848|gb|EGH37362.1| putative outer membrane lipoprotein [Escherichia coli AA86]
 gi|331042294|gb|EGI14436.1| putative OmpA-family membrane protein [Escherichia coli M605]
          Length = 550

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWHPPEQKMEVTAS-LPVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|332975535|gb|EGK12425.1| OmpA domain protein [Desmospora sp. 8437]
          Length = 243

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               +FD   S    +    L K+G+ L      + I G+TD    R  A  N +LS +R
Sbjct: 135 PGHILFDTDQSTIRAKARPELDKLGKSLKEYKGTVRIYGYTDD---RGSAAYNQKLSQER 191

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           A +    L+K  G++ D + KI GF      + +  D     NRR++I+V+ +
Sbjct: 192 AEAVKAYLVKECGIAGDHL-KIKGFGKKHPVVPNNSDSNRQKNRRVEIIVDSK 243


>gi|255264641|ref|ZP_05343983.1| inner membrane lipoprotein YiaD [Thalassiobium sp. R2A62]
 gi|255106976|gb|EET49650.1| inner membrane lipoprotein YiaD [Thalassiobium sp. R2A62]
          Length = 223

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 20/208 (9%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK--KRLQDL 195
           Q   +   +  + +  G     +  +    + EE      L             +RL   
Sbjct: 30  QDPNNPNRNTQQGALIGAATGIAVGILAGDDPEERRRGALLGAVVGGGGGALIGQRLDQQ 89

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
              +  +L G         V    T + +++S+       +F   SS         L  +
Sbjct: 90  EVALRQSLGG--------NVGITNTGSELIVSL---PQDILFATDSSTLTGGLQSDLNAL 138

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              L       +++ GHTD     +   ++  LS  RA +   VL+ +GVS  RI+   G
Sbjct: 139 ANNLNQYPNTTVNVIGHTDN--VGDAGYND-GLSTRRATAVANVLLNAGVSSGRINA-FG 194

Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340
               +    +  D   + NRR++I++  
Sbjct: 195 RGEAQPIATNLTDEGRAQNRRVEIVITP 222


>gi|241764375|ref|ZP_04762401.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241366218|gb|EER60782.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 215

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + ++   +++     G        G+    T+   L   +D  +   F    +   P   
Sbjct: 71  QNMERQKREMEQATRGT-------GIAVSQTQDNQL--KLDIPSDISFAVGRADIQPNFA 121

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL +  E L    E  + I GHTD +        N  LS++RA S    LM  GV   R
Sbjct: 122 PVLDRFAEGLRAHPETDVRIVGHTDNT---GSDAVNDPLSVNRASSTRNYLMNRGVDGRR 178

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           I  + G    +     A+    S NRR++I V +R
Sbjct: 179 I-SVEGMGERQPIATNATAEGRSRNRRVEIFVGER 212


>gi|222150201|ref|YP_002551158.1| porin [Agrobacterium vitis S4]
 gi|221737183|gb|ACM38146.1| porin [Agrobacterium vitis S4]
          Length = 221

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   F       LP     L  +  VL        + + 
Sbjct: 91  LQGTGVSVTRQGDRI-ILNMPSNITFPTDQDQVLPPFYPTLNSVAIVLKKF-NRTLVDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD++      + N  LS  RA S    L   GV   R+S + GF   +    +     
Sbjct: 149 GHTDST---GGLQHNQDLSQRRAESVLNYLGSQGVDPRRMSAM-GFGPSQPIATNATPQG 204

Query: 328 NSANRRIDILVEDRQ 342
            + NRR+++ +   +
Sbjct: 205 RAQNRRVEVAISPLK 219


>gi|24216275|ref|NP_713756.1| flagellar motor protein MotB [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197541|gb|AAN50774.1| flagellar motor protein MotB [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 275

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 21/176 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           E + +    K L    +  +      V    VK         G++IS++       F+  
Sbjct: 78  ESLPSQTTGKALSKSKQLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291
           S+I      + L+K   ++ +    + + GH DA+                +NW L+  R
Sbjct: 132 SAILTDSIKIALRKASSLIKNLNRFVRVEGHCDANAVNPGVAPGKEERAYINNWDLAGAR 191

Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342
           A  S   ++    +       +S F   R  +   A  P   A NRRIDI++   +
Sbjct: 192 AINSTDYIINVEKLDPSWFQAVS-FGAFRPLVVEYAGTPEAKAYNRRIDIVIMTEK 246



 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K    +   N+  + + Y D +T+L+ FF++++    T+    + I   F          
Sbjct: 3   KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           + G FD      +    ++ ++I+   ++ + 
Sbjct: 55  TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86


>gi|255037616|ref|YP_003088237.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254950372|gb|ACT95072.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ S    LPE+   L ++ +V++ S    I + GHTD          N  LS  RA S 
Sbjct: 310 FETSKYTLLPESYEELNRLVDVMSDSPTVKIRVEGHTDNV---GDFDKNLELSRQRAESV 366

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILVED 340
              L++ G+   RI    G+   R     S+     NRR++ ++ D
Sbjct: 367 KNYLVEKGIEGSRIEA-KGYGGTRPITKGSEEERKKNRRVEFVITD 411


>gi|323495403|ref|ZP_08100480.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546]
 gi|323310326|gb|EGA63513.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546]
          Length = 322

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +SS    E+  +L ++ + +    +  + I G+TD+      A  N +LS  R
Sbjct: 211 DSGSFALNSSELKEESKSILDELVQFMNQYPQANVEITGYTDS---SGAAAYNQKLSEKR 267

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L   G+   RI+ +SG   +    +++       NRR++I+V
Sbjct: 268 AQSVANALESEGIDSSRIT-VSGEGENNPIASNETREGREQNRRVEIVV 315


>gi|289209442|ref|YP_003461508.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945073|gb|ADC72772.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 221

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++G     TR G  I I++      FD   +   PE   VL  +  VLA   +  I +
Sbjct: 89  EQLRGTGVSVTRDGDNI-ILNMPGHITFDIDRTDIKPEFEEVLNSVALVLAEYDQTGIEV 147

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD          N  LS  RA S  + L++ GV   R+  + GF  H+    ++   
Sbjct: 148 AGHTD---ITGRVEYNMDLSERRAQSVGRALIRRGVQSVRVDTV-GFGPHQPIATNETAE 203

Query: 327 MNSANRRIDILV 338
             + NRR+++ +
Sbjct: 204 GRALNRRVELTL 215


>gi|86358413|ref|YP_470305.1| outer membrane lipoprotein [Rhizobium etli CFN 42]
 gi|86282515|gb|ABC91578.1| outer membrane lipoprotein [Rhizobium etli CFN 42]
          Length = 221

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       P     L  +  VL        I + 
Sbjct: 91  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+  
Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|330959172|gb|EGH59432.1| ompA family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 260

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E        ++ +    +   +     +D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNYTALQTNPEATKVAALETKDASEWLDKAEKAFRDDEDVKKVDQLAY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248


>gi|320354509|ref|YP_004195848.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320123011|gb|ADW18557.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 212

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD +SS   P     L +I  VL +  +  I + GHTDA   R   + N +LS  RA +
Sbjct: 110 FFDTNSSQLKPGAYNELNRITNVLNNYPQTTIRVEGHTDA---RGSDQYNQQLSERRAMA 166

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
               L + GV+  RI  + G+   +   +SD M   NRR++I++
Sbjct: 167 VKNALAQQGVNPSRIEAV-GYGESQPISSSDAM---NRRVNIVI 206


>gi|114776497|ref|ZP_01451542.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Mariprofundus ferrooxydans PV-1]
 gi|114553327|gb|EAU55725.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Mariprofundus ferrooxydans PV-1]
          Length = 499

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 14/255 (5%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D    E I     D +              N +   +   +       + +     +   
Sbjct: 248 DTGSHEAIILKQRDFRFKLATLLDIDTDSNNPMLSRTQPAKIIAAVREMKQTLATERKAR 307

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           K+  ++     E         +   L+  ++ ++ ++ +   + L     +   +  L  
Sbjct: 308 KAERVQLKQQYETELKARLAEETSQLSKAQQSQMSNIKEAFQAKLERETYEQKRQQRLRA 367

Query: 219 TTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270
             +   +  + +   + +       F   SS    +   +L ++ E  A ++   I I G
Sbjct: 368 LFKPNQVELLANLDGSILMRLSALKFASGSSKINAKYYDMLGQVKEAFAIYADRKIRIEG 427

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           HTD    +   + N RLSL RA +    L+ +G    R+  + G+   R   ++  D   
Sbjct: 428 HTDN---KGDVKVNQRLSLKRAEAVRDFLIAAGADGSRLKAL-GYGEVRPIASNEFDRGR 483

Query: 329 SANRRIDILVEDRQG 343
           + NRRID+++E   G
Sbjct: 484 AMNRRIDVVIEAPAG 498


>gi|60115453|dbj|BAD90019.1| MotB [Pectobacterium carotovorum subsp. carotovorum]
          Length = 175

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
             Q  II+KK       ++ GSWKI YADFMT +MA FLVMW+I  +       I +YF 
Sbjct: 2   KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKI--DLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
              K  +T+     D  +P      +    D  + + I  ++V+ K+      +  +RL+
Sbjct: 62  TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121

Query: 129 NNIFYLSN 136
             I     
Sbjct: 122 QLIEADPR 129



 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226
            +++      +  + +     + RL  L +++   +        ++  +L E    G+ I
Sbjct: 89  TQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLIEADPRLRALRPHLLIEMIDEGLRI 148

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            IID +N PMF   S+   P    +L+
Sbjct: 149 QIIDSQNRPMFKTGSAQVEPYMRDILR 175


>gi|15596238|ref|NP_249732.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
 gi|116048969|ref|YP_792229.1| hypothetical protein PA14_50880 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152988234|ref|YP_001349691.1| hypothetical protein PSPA7_4338 [Pseudomonas aeruginosa PA7]
 gi|218892997|ref|YP_002441866.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254234177|ref|ZP_04927500.1| hypothetical protein PACG_00011 [Pseudomonas aeruginosa C3719]
 gi|254239398|ref|ZP_04932720.1| hypothetical protein PA2G_00011 [Pseudomonas aeruginosa 2192]
 gi|296390597|ref|ZP_06880072.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           PAb1]
 gi|313105992|ref|ZP_07792253.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|9946954|gb|AAG04430.1|AE004536_9 probable outer membrane protein precursor [Pseudomonas aeruginosa
           PAO1]
 gi|115584190|gb|ABJ10205.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166108|gb|EAZ51619.1| hypothetical protein PACG_00011 [Pseudomonas aeruginosa C3719]
 gi|126192776|gb|EAZ56839.1| hypothetical protein PA2G_00011 [Pseudomonas aeruginosa 2192]
 gi|150963392|gb|ABR85417.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
 gi|218773225|emb|CAW29037.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|310878755|gb|EFQ37349.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 210

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   SS         L  I E L    ++  +SI GHTD+         N +LS  RA +
Sbjct: 105 FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 161

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
               L+ +GV    I  + G    +    +      + NRR++IL++ 
Sbjct: 162 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIKR 209


>gi|241205517|ref|YP_002976613.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859407|gb|ACS57074.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 221

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       P     L  +  VL        I + 
Sbjct: 91  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+  
Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|332297244|ref|YP_004439166.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332180347|gb|AEE16035.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 436

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 18/182 (9%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           +E +      +     ++ +  A +   RL D+ ++I            ++         
Sbjct: 270 VESAYGNTFEFSGKAQAEVQEFASRSADRLADVRERIDQL--------GIENAQVRADEK 321

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           G+ IS+        F   S++ L    + L+KI E+L+      + I GHT A      +
Sbjct: 322 GLTISL----ENIQFKADSAVLLESEKMKLRKIAEILSLFPENDLLITGHT-ALAGTAAS 376

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           R    LS  RA +  + LM+ G+ +       G         +      + NRR++I V 
Sbjct: 377 RT--ALSEQRAKAVAEYLMQLGIRDSYHIFTQGLGGEHPIAPNTTEANKARNRRVEITVM 434

Query: 340 DR 341
           D+
Sbjct: 435 DK 436


>gi|120613283|ref|YP_972961.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120591747|gb|ABM35187.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 217

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + ++   +++     G         V+ +T    + +   D  +   F  + S   P   
Sbjct: 72  QHMERQKQEMQQVTQG------TGVVVTQTQDNQLKL---DIPSDISFATNRSDIQPNFA 122

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL +  E L ++    + I G+TD++   N A +N  LSLDRA S    L   GV+  R
Sbjct: 123 PVLDRFAEGLRNNPNAEVRIVGYTDST--GNDAINN-PLSLDRATSTRNYLTARGVNGAR 179

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV--EDRQG 343
           + ++ G         +D     + NRR++I V    RQG
Sbjct: 180 V-QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG 217


>gi|154247748|ref|YP_001418706.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154161833|gb|ABS69049.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2]
          Length = 729

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +  ++ ++   L      ++ I GHTD       A  N RLS  RA + 
Sbjct: 624 FASGSAEIDRHSRGLIDRLAVALKRCPTAMVRILGHTDGV---GDAEFNKRLSEARANAV 680

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              L+ +GV+ DR+S  +GF   +    +D     + NRRI+  V++R
Sbjct: 681 LAYLVTAGVTADRLSA-AGFGAGQPLAPNDTEAGKALNRRIEFEVKER 727


>gi|261856894|ref|YP_003264177.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261837363|gb|ACX97130.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 331

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L ++ ++L       + I GHTD +        N +LS DRA + 
Sbjct: 229 FATDSAALEASSDKELGEMAKMLKQEPSAHVYIVGHTDDT---GALPHNLKLSRDRADAV 285

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            + L+ + G+S +R+    G A        ASD   + NRR++I+++
Sbjct: 286 VKALITRYGISSNRLVA-EGVASFAPVASNASDQGRALNRRVEIVLQ 331


>gi|190892542|ref|YP_001979084.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           CIAT 652]
 gi|190697821|gb|ACE91906.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           CIAT 652]
 gi|327192440|gb|EGE59397.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           CNPAF512]
          Length = 221

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       P     L  +  VL        I + 
Sbjct: 91  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+  
Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|332085086|gb|EGI90266.1| inner membrane lipoprotein yiaD [Shigella boydii 5216-82]
          Length = 238

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 102 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 160

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 161 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 216

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 217 ASNSTAEGKAQNRRVEITL 235


>gi|294852539|ref|ZP_06793212.1| outer membrane protein [Brucella sp. NVSL 07-0026]
 gi|294821128|gb|EFG38127.1| outer membrane protein [Brucella sp. NVSL 07-0026]
          Length = 258

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 216

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 217 AQNRRVEIQISPLRG 231


>gi|261854755|ref|YP_003262038.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261835224|gb|ACX94991.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 364

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   ++  PE+   L +  ++L   ++  + I GHTD +        N +LS  R
Sbjct: 259 DGIFFDSGKALLKPESNPALDQAVQLLRQQASLKLLIAGHTDDT---GSHAANQKLSQQR 315

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
           A +    L+  G++ DR++   GF         ASD   + NRR++++
Sbjct: 316 AEAVRNALLARGIAADRLTA-QGFGSGVPLADNASDAGRAQNRRVELV 362


>gi|304321111|ref|YP_003854754.1| hypothetical protein PB2503_07784 [Parvularcula bermudensis
           HTCC2503]
 gi|303300013|gb|ADM09612.1| hypothetical protein PB2503_07784 [Parvularcula bermudensis
           HTCC2503]
          Length = 231

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAH 261
            D   + +  E   TG+ +  +      +      F    +   PE    L  + +V+  
Sbjct: 91  MDRQEQELRRELASTGVRVQRVGNDIRLIMPGNITFATGQASVRPEFYATLNSVAKVIER 150

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             +  + + GHTD+         N +LS+ RA S    L   GV+  RI  I G+   + 
Sbjct: 151 YQQTAVLVEGHTDSV---GTEDSNVQLSIARAESVGNYLAAQGVAVPRIRAI-GYGESQP 206

Query: 321 KIAS--DPMNSANRRIDILVEDRQ 342
             ++  D     NRR++I +   Q
Sbjct: 207 VASNGTDSGRQQNRRVEIQLSPTQ 230


>gi|283787805|ref|YP_003367670.1| outer membrane protein [Citrobacter rodentium ICC168]
 gi|282951259|emb|CBG90953.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 220

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N RLS  RA S    L+  GV   RI + SG       
Sbjct: 142 PKTAVNVIGYTDST---GGQDLNMRLSQQRADSVASALITQGVEAGRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220


>gi|300719120|ref|YP_003743923.1| outer membrane protein [Erwinia billingiae Eb661]
 gi|299064956|emb|CAX62076.1| Putative outer membrane protein [Erwinia billingiae Eb661]
          Length = 220

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R +      LS  RA S    L+  GV+ +R+ + SG       
Sbjct: 142 PKTAVNVAGYTDSTGSRQLNMT---LSQQRADSVGSALITQGVAANRV-RTSGMGPDNPV 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|320182069|gb|EFW56974.1| Outer membrane protein A precursor [Shigella boydii ATCC 9905]
          Length = 219

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|89054158|ref|YP_509609.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88863707|gb|ABD54584.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 219

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           + +L E T   +++++       +FD  S+         L+ +   L    +  + + GH
Sbjct: 95  ERILIENTGEALILTL---PEGILFDVDSAAIRAGLQGDLRALAFNLNQYPDTRVVVEGH 151

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329
           TD +     A  N  LS  RA +   VL++ GV+  R+  + G         +       
Sbjct: 152 TDNT---GSASYNQDLSTRRAQAVSGVLLEGGVAPFRVQSV-GRGESAPIATNLTPEGRQ 207

Query: 330 ANRRIDILVEDR 341
            NRR+++++  +
Sbjct: 208 QNRRVEVIIRPQ 219


>gi|170691988|ref|ZP_02883152.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170143272|gb|EDT11436.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 217

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + L  + EVI+ + GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++        N  LS++RA S    L + GV+  R+S   G   ++    ++     +A
Sbjct: 145 DST---GQPAYNQTLSVNRAQSVTGYLAQRGVAPQRLSA-EGMGQNQPIADNNTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|293194231|ref|ZP_06609953.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces
           odontolyticus F0309]
 gi|292819750|gb|EFF78763.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces
           odontolyticus F0309]
          Length = 403

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G +I++ D     +FD   S   PE    L+ +  VL ++      I GHTD+    +  
Sbjct: 284 GTVITLED---GVLFDFGKSDIRPEAAQTLKSLAGVLNNAKVPTAHIYGHTDSI---SDE 337

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333
             N +LS +RA +    L K GVS   I   +G+   +    ++           + NRR
Sbjct: 338 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 395

Query: 334 IDILV 338
           ++I +
Sbjct: 396 VEIFI 400


>gi|116253010|ref|YP_768848.1| OmpA family outer membrane protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257658|emb|CAK08755.1| putative OmpA family outer membrane protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 221

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       P     L  +  VL        I + 
Sbjct: 91  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+  
Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|257458255|ref|ZP_05623405.1| OmpA family protein [Treponema vincentii ATCC 35580]
 gi|257444365|gb|EEV19458.1| OmpA family protein [Treponema vincentii ATCC 35580]
          Length = 436

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +     D   + +  +  +  I I++ D R    F   S+  LP+    L  I E L 
Sbjct: 300 RDIEKFFLDREPESITVKAPKNIIKITMYDIR----FVADSAEILPDETGRLDVIAEALK 355

Query: 261 HS-TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                    I GHT         R    LSL RA    + L K G+   R+   +G+   
Sbjct: 356 KVGPNTHFLIEGHTANLNRPEGERI---LSLQRADKIAEELAKRGIEASRME-TAGYGAT 411

Query: 319 RLKIASDP--MNSANRRIDILVED 340
           R    +D     + NRR++I +  
Sbjct: 412 RPIAPNDTAENRAKNRRVEITILR 435


>gi|149374667|ref|ZP_01892441.1| outer membrane protein; OmpA family [Marinobacter algicola DG893]
 gi|149361370|gb|EDM49820.1| outer membrane protein; OmpA family [Marinobacter algicola DG893]
          Length = 271

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 105/277 (37%), Gaps = 20/277 (7%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N      ++ S  +    + P+ +++     +  E I  +    + G    +   ++L  
Sbjct: 5   NMTLGMAVSVSVLVAGCASTPQDNAKVDEARAAYEEIRNDPNVARSGDRQLRSAREQLSR 64

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
               L++       +++    +   +   +  +  +   + ++        E  +     
Sbjct: 65  AESLLADGADIAEIEHAAYLANRHAQIAGEQGERAELQEQIDSAEARRKELELEMRADEA 124

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            + +  AK++   +  + A         E T  G+++++ D     +FD   +       
Sbjct: 125 AQARREAKELRLQMEAMQA---------EQTDRGMVLTLGD----VLFDLDKAELKSSGE 171

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++++ E +A      + + G+TD++     A  N  LS  RA +    L++ G+S  R
Sbjct: 172 ATVRRLAEFMAEYENRRVRVEGYTDST---GEASYNQGLSERRAQAVSDTLIEMGISRTR 228

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           +    GF       ++D       NRR++I++ D +G
Sbjct: 229 VE-TKGFGEQFPVASNDTSGGRQQNRRVEIVISDEEG 264


>gi|329114347|ref|ZP_08243109.1| Outer membrane protein [Acetobacter pomorum DM001]
 gi|326696423|gb|EGE48102.1| Outer membrane protein [Acetobacter pomorum DM001]
          Length = 376

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   S+       ++ +  +   H  T  I + G+TD   A P     + N  LSL R
Sbjct: 268 FFDWDKSVLTARARQIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSLRR 327

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A S    L++ GV    I  + G+      + + P      NRR++I++
Sbjct: 328 ADSVKAELIRDGVPASAID-VHGYGEAHPLVPTGPNTREPQNRRVEIIL 375


>gi|224417757|ref|ZP_03655763.1| motility protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|253827100|ref|ZP_04869985.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|313141298|ref|ZP_07803491.1| motb protein [Helicobacter canadensis MIT 98-5491]
 gi|253510506|gb|EES89165.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|313130329|gb|EFR47946.1| motb protein [Helicobacter canadensis MIT 98-5491]
          Length = 256

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 18/195 (9%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G        LE  +  + N   P L+      ++ ++ ++D     +S ++     N + 
Sbjct: 52  GSLEGTFAVLENGVKTQINPPAPILAT----PIEAQQEMEDATNIFASLITEYNEINKLA 107

Query: 214 G---VLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR 269
               V FE    G++I I     + +F+  S+       +  L+++        E   I+
Sbjct: 108 NGPAVEFEEAEEGVIIRI---PESLLFESGSATLTNSSGLAFLKRLTLEFDKLPETALIK 164

Query: 270 --GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324
             GHTD  P R   I  DN  LS+ R  +  ++++  G+S++R+    G        ++ 
Sbjct: 165 AIGHTDNVPMRENPIFADNLELSIARGVNVAELIITEGISKERVLG-GGEGEFSPIASNK 223

Query: 325 -DPMNSANRRIDILV 338
              + + NRR+D+ +
Sbjct: 224 IPELRAKNRRVDLYI 238


>gi|154508489|ref|ZP_02044131.1| hypothetical protein ACTODO_00990 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798123|gb|EDN80543.1| hypothetical protein ACTODO_00990 [Actinomyces odontolyticus ATCC
           17982]
          Length = 403

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G +I++ D     +FD   S   PE    L+ +  VL ++      I GHTD+    +  
Sbjct: 284 GTVITLED---GVLFDFGKSDIRPEAAQTLKSLAGVLNNAKVPTAHIYGHTDSI---SDE 337

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333
             N +LS +RA +    L K GVS   I   +G+   +    ++           + NRR
Sbjct: 338 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 395

Query: 334 IDILV 338
           ++I +
Sbjct: 396 VEIFI 400


>gi|332665208|ref|YP_004447996.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334022|gb|AEE51123.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 291

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 97/272 (35%), Gaps = 10/272 (3%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
            G  L   S      +N        K ++       +NS D       Q  + +     +
Sbjct: 7   LGAALFLLSACGVSNKNVLAMEQSYKTEIGTLNEQLRNSRDEITRMQLQIAERKGENTAL 66

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
               +       +     D  + + L K + L  ++  + +  L   ++   +    K+ 
Sbjct: 67  LATQDKYLKRLDELEEELDKAQNQALTKQSSLGDALKAKNDQILSLENQIAAIRGALKQE 126

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIV 250
           L+ L ++I+      +A   V     E     I++++ +     +F    S+   P    
Sbjct: 127 LETL-QQIAKEFQDSLAKFPVAQYSVEVRNGKIVLALTES---LLFKSGVSNRIEPNGQA 182

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308
            L+ IG +L  +  + I + GHTD         D+W  +  RA +  + L+    +  +R
Sbjct: 183 ALKAIGTLLNANPVLLIQVLGHTDNQAASRKNLDSWDFTSLRAATVVRSLIDTHDLGANR 242

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +    G        +++     S NRR+++ +
Sbjct: 243 VIS-GGRGEFDPITSNETSEGQSRNRRVELSL 273


>gi|315605260|ref|ZP_07880306.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313077|gb|EFU61148.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 401

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281
           G +I++ D     +FD   S   P+    L  +  VL ++    + I GHTD+    +  
Sbjct: 282 GTVITLEDS---ILFDFGKSDIRPDAAQTLSTLATVLNNAKVPAAHIYGHTDSV---SDE 335

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333
             N +LS DRA +    L K+GV+       +G+   +    ++           + NRR
Sbjct: 336 AFNQKLSEDRANAVMNDLSKNGVTAT--LDATGYGETKPVAPNENPDGSDNPAGRALNRR 393

Query: 334 IDILV 338
           ++I +
Sbjct: 394 VEIYI 398


>gi|311697206|gb|ADQ00078.1| secreted protein containing outer membrane protein, OmpA/MotB,
           C-terminal domain [marine bacterium HP15]
          Length = 366

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 101/300 (33%), Gaps = 27/300 (9%)

Query: 48  FLVMWIINATDDDTKKAIEQY--FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
           F V+   +  + +T+        F       +   K       P   +  +  D+ +D+ 
Sbjct: 72  FSVLLQGSYAEPETRTQNLDTELFRGSLGARLHPGKFRLGGWRPFGGAGYSYTDIDVDQG 131

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK---GKDLCKSTD 162
             K    + +    Q+    R        + ++  E   +           G++   +  
Sbjct: 132 GGKTEDAIYLEGGFQRMVAPRFMIETGVRARTELEEGYVDGQYFAGIHYLFGREFPAAPK 191

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
              ++  +    + P        +     + DL K   + +  LV  +     L +  + 
Sbjct: 192 PVVAVQPKPEPVVRPPMDTDGDGV-----IDDLDKCPDTPMGALVDSDGCPKELTKDIKE 246

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
            + +          FD   +   P+    + ++ +VL       I + GHTD++     A
Sbjct: 247 TLYVE---------FDLDKTEVKPQFYPEIGELAKVLKQYPTSTILLEGHTDST---GSA 294

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             N +LS  RA +  +VL+    +   RI   +G    +   ++      + NRR++ +V
Sbjct: 295 SYNQQLSKSRADAVMKVLIDRFSIPSTRI-STTGMGESQPIASNATVEGRAQNRRVEAIV 353


>gi|281179819|dbj|BAI56149.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 550

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        + T + + +  +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMDVTAS-LPVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|152993615|ref|YP_001359336.1| hypothetical protein SUN_2037 [Sulfurovum sp. NBC37-1]
 gi|151425476|dbj|BAF72979.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 232

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           ++  D+A+ + + ++      +        +  G  + I+  R+  MF   SS       
Sbjct: 75  QQANDIARSLGTGVNNDPLAYLDPNQDLIVSNNGRYVKIM-FRDRMMFPTGSSRLTSSAS 133

Query: 250 VVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             + K+G++L    + I  + G TD    R     N+RLS +RA +    L + G++   
Sbjct: 134 YKVGKVGKILREYPQTIVQVAGFTDD---RGGYDYNYRLSRNRAKTVSDRLYREGINNP- 189

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            S ++G ++++  + ++     + NRR++I +
Sbjct: 190 -SYVTGCSYNKPLVPNNSERNMALNRRVEIYL 220


>gi|258541881|ref|YP_003187314.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01]
 gi|256632959|dbj|BAH98934.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01]
 gi|256636016|dbj|BAI01985.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-03]
 gi|256639071|dbj|BAI05033.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-07]
 gi|256642125|dbj|BAI08080.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-22]
 gi|256645180|dbj|BAI11128.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-26]
 gi|256648235|dbj|BAI14176.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-32]
 gi|256651288|dbj|BAI17222.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654279|dbj|BAI20206.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-12]
          Length = 375

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   S+       ++ +  +   H  T  I + G+TD   A P     + N  LSL R
Sbjct: 267 FFDWDKSVLTARARQIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSLRR 326

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A S    L++ GV    I  + G+      + + P      NRR++I++
Sbjct: 327 ADSVKAELIRDGVPASAID-VHGYGEAHPLVPTGPNTREPQNRRVEIIL 374


>gi|146339724|ref|YP_001204772.1| putative Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Bradyrhizobium
           sp. ORS278]
 gi|146192530|emb|CAL76535.1| Conserved hypothetical protein; Putative Outer membrane protein and
           related peptidoglycan-associated (lipo)proteins
           [Bradyrhizobium sp. ORS278]
          Length = 707

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLD 290
           +    F   S+    E++ +L  I +V        I+I GHTD         DN  LS  
Sbjct: 601 KGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEGHTDNV---GNEADNIDLSKR 657

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           RA +    + ++G+   R+S   G+  +R   ++D     + NRRI+ +V+
Sbjct: 658 RAAAVVSYISEAGIDTSRMSS-EGYGQNRPVASNDSAEGRAQNRRIEFVVK 707


>gi|220921336|ref|YP_002496637.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219945942|gb|ACL56334.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 178

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S    P     L +  + L  +        + GHTDA   R     N  LS  RA 
Sbjct: 76  FEYNSDALTPAAKQNLDEFAKALQDARLRSASFVVEGHTDA---RGGEEFNLGLSTRRAD 132

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  + L   GV + +++   GF   R     DP++ ANRR++
Sbjct: 133 AVVKYLSGRGVPQGQLTA-RGFGKSRPL-TDDPLDPANRRVE 172


>gi|241663775|ref|YP_002982135.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D]
 gi|240865802|gb|ACS63463.1| OmpA/MotB domain protein [Ralstonia pickettii 12D]
          Length = 209

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S++  P     L  + + L    E   ++ GHTD++        N  LS  RA S 
Sbjct: 104 FDTDSAVIKPSFRGPLDSVAQTLTQHPELAANVVGHTDST---GNPNYNMTLSQKRAQSV 160

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L   GV+ +R+S   G   ++     A++   + NRR++I ++  QG
Sbjct: 161 ASYLTDRGVARNRLSA-EGRGQNQPVADNATEAGRAQNRRVEIYLKPIQG 209


>gi|197116453|ref|YP_002136880.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
 gi|197085813|gb|ACH37084.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
          Length = 333

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+    L+ + + L        +I GHTD+         N +LS  RA S 
Sbjct: 229 FDTNKSDIKPQYHDELKALADFLKEFPNATGTIEGHTDSV---GDKAANMKLSQRRADSV 285

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            + L+   G++ +R+  + G+   +    +        NRRI+
Sbjct: 286 RKYLVDKFGIAPERVKAV-GYGPTKPAADNKTAAGKQKNRRIE 327


>gi|153875874|ref|ZP_02003478.1| OmpA/MotB [Beggiatoa sp. PS]
 gi|152067662|gb|EDN66522.1| OmpA/MotB [Beggiatoa sp. PS]
          Length = 263

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            T + +    GS   K      E    Y   +             ++K  +  ++ +  +
Sbjct: 20  ATISGLTTSCGSNISKNDGILKEARDTYAVAAAYESSANLEALSKAKKALENAENAETVE 79

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-- 223
            I                +A ++K   + L  + +S +   + +   + V          
Sbjct: 80  EIKHFAYLAKQQAQIAISIAERQKTERERLVGQKNSRIDKPILETQQQSVSINPQLEKQL 139

Query: 224 ----------ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
                     + I++ +     +F+   +         ++ +   L       ISI GHT
Sbjct: 140 NNWQQRQTGRLTITLNE-----VFENDRTDLSQTAQSDIKTLAAFLKQHPYFRISIEGHT 194

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D +        N  LS  RA S    LM  G++  RI+ + GF   R      +      
Sbjct: 195 DNAGIHTH---NLGLSERRATSVKFALMNDGITSKRIT-VKGFGETRPIGSNRTQQGRQK 250

Query: 331 NRRIDILV 338
           NRR++I++
Sbjct: 251 NRRVEIII 258


>gi|197106951|ref|YP_002132328.1| OmpA family protein [Phenylobacterium zucineum HLK1]
 gi|196480371|gb|ACG79899.1| OmpA family protein [Phenylobacterium zucineum HLK1]
          Length = 221

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G  I +    +   F    S        VL  I   L+   +  I + GH D++
Sbjct: 97  VEVERRGDDIVLN-MPSDVTFGVDQSDVQSRFYPVLDDIAATLSRYPQTLIDVAGHADST 155

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S    L+  GV +DR+  + G+   R     A++   + NRR
Sbjct: 156 ---GADAYNQALSERRASSVASYLVSRGVLQDRLY-VVGYGESRPVASNATEQGRAQNRR 211

Query: 334 IDILVEDRQG 343
           ++I V   +G
Sbjct: 212 VEITVRPFRG 221


>gi|126739844|ref|ZP_01755535.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6]
 gi|126719076|gb|EBA15787.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6]
          Length = 791

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 16/250 (6%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
            ++         +    NQ+    R +                    +    G+DL  + 
Sbjct: 538 SEQDAKTVKAQRETALLNQQVAALRQQLGSLQAILDDYEARDAAQRVQLQNLGQDLNAAL 597

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
               S  +          K             +  +  +  L    ++   +       +
Sbjct: 598 ARAASEERRRRLLEEKERKRLEAEAAALASKAEELENKAQDLERYRSEFFGRLRDVLGKQ 657

Query: 222 TGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271
            G+ I        +  +F   S+         + K+ ++L        A    +I + GH
Sbjct: 658 EGVRIEGDRFVFASEVLFPPGSADLSAAGQAEIGKVAQILQSVVVEIPAEINWIIRVDGH 717

Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP-- 326
           TD +         DNW LS  RA S  + ++++ G+   R++  +GF   +   ++D   
Sbjct: 718 TDNTTMLGHPKYSDNWELSQGRALSVVRYMIENLGIPPGRLAA-NGFGEFQPVNSADTPE 776

Query: 327 MNSANRRIDI 336
             + NRRI++
Sbjct: 777 ARAQNRRIEL 786


>gi|253771615|ref|YP_003034446.1| outer membrane lipoprotein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163475|ref|YP_003046583.1| putative outer membrane lipoprotein [Escherichia coli B str.
           REL606]
 gi|297520666|ref|ZP_06939052.1| putative outer membrane lipoprotein [Escherichia coli OP50]
 gi|300928223|ref|ZP_07143762.1| OmpA family protein [Escherichia coli MS 187-1]
 gi|242379069|emb|CAQ33870.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)]
 gi|253322659|gb|ACT27261.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975376|gb|ACT41047.1| predicted outer membrane lipoprotein [Escherichia coli B str.
           REL606]
 gi|253979532|gb|ACT45202.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)]
 gi|300463768|gb|EFK27261.1| OmpA family protein [Escherichia coli MS 187-1]
          Length = 219

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|163794140|ref|ZP_02188113.1| hypothetical protein BAL199_01964 [alpha proteobacterium BAL199]
 gi|159180754|gb|EDP65273.1| hypothetical protein BAL199_01964 [alpha proteobacterium BAL199]
          Length = 250

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           RL  L   +++ LSG   D +++          ++I++    +  +F+   +        
Sbjct: 98  RLSYLEPLLTAKLSG---DPVLRTARIVRAGDRLIITL---PSDLLFEAGQARLSTTARS 151

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308
            + ++   L      I + GH D  P    A    N  LSL RA +    L+ +G+S  R
Sbjct: 152 AVAELATALVTLPNRIDVVGHADPRPIPPGAPFGTNRALSLARADAVAVALVDAGLS--R 209

Query: 309 ISKISGFAHHR--LKIASDPMNSA---NRRIDILVEDRQG 343
           +  + G    R      + PM       RR+D+++   + 
Sbjct: 210 MPTVEGMGDSRFYTIAPTAPMERRYALARRVDVVLFPERA 249



 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 18/49 (36%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68
                      SW +   D +++++AFF++ + + + +          
Sbjct: 18 GRRAGRKYGGGPSWLVTLVDLVSLMLAFFVMRFAMTSIESPRFDEAAAS 66


>gi|194430954|ref|ZP_03063247.1| OmpA family protein [Shigella dysenteriae 1012]
 gi|194420409|gb|EDX36485.1| OmpA family protein [Shigella dysenteriae 1012]
 gi|332085980|gb|EGI91144.1| inner membrane lipoprotein yiaD [Shigella dysenteriae 155-74]
          Length = 219

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|90416505|ref|ZP_01224436.1| ompA family protein [marine gamma proteobacterium HTCC2207]
 gi|90331704|gb|EAS46932.1| ompA family protein [marine gamma proteobacterium HTCC2207]
          Length = 220

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G+     T +  SI       +  L  +   + KR KR+  LA        G   D    
Sbjct: 28  GEQKTTKTAIGASIGAGVGAVVAYLDNKDEDSRKRNKRI--LAAAGGGAAIGYYMDAQEA 85

Query: 214 GVLFETTRTGILISII-DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266
            +  +   +G+ +  + D  N  M     F  +S+        VL  +  VL    +  +
Sbjct: 86  KLRQQLRGSGVSVERVGDNINLIMPGNITFASNSADINASFYSVLDSVALVLEEYDKTLV 145

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + GHTD+      A  N  LS  RA S    L+   +   R+  + GF   +    +D 
Sbjct: 146 VVAGHTDSD---GGAAFNEDLSERRAQSVSGYLVSQSILPIRLETV-GFGERQPIAGNDS 201

Query: 327 MNSA--NRRIDILVEDRQG 343
                 NRR++I +    G
Sbjct: 202 AAGKQLNRRVEITLLPIAG 220


>gi|260574860|ref|ZP_05842862.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259022865|gb|EEW26159.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 218

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +  +      +  G  +  +    +         L   +   ++       L   A  +
Sbjct: 27  PDDPQARTRNGAVAGALIGGTLGATQHGRNRFGNALLGATLGGLVGGAIGNTLDQQAADL 86

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            S +S           +   T   +++++       +F   S+   P+    L+ +   L
Sbjct: 87  RSQMSN--------STMVTNTGNSLVVTM---PQDILFALDSANLRPDLQADLRAVSNNL 135

Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  I + GHTD       A  N  LS  RA +   VL   GV   RIS   G    
Sbjct: 136 LDYPDSTIEVVGHTDD---SGSAAYNQDLSERRARAVAAVLRNGGVPGGRISA-YGRGED 191

Query: 319 RLKIASDP--MNSANRRIDILVED 340
           +   ++      + NRR++I++  
Sbjct: 192 QPIASNQTVNGRAQNRRVEIIIHP 215


>gi|238799328|ref|ZP_04642769.1| hypothetical protein ymoll0001_24410 [Yersinia mollaretii ATCC
           43969]
 gi|238716817|gb|EEQ08692.1| hypothetical protein ymoll0001_24410 [Yersinia mollaretii ATCC
           43969]
          Length = 574

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S      T V++  +  + A    +I + GHTD       ++ N  LSL RA 
Sbjct: 442 SLFDVGKSELKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDSQSNQILSLKRAE 498

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R   ++D     + NRR++I +  +
Sbjct: 499 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 548


>gi|238790227|ref|ZP_04634002.1| hypothetical protein yfred0001_31620 [Yersinia frederiksenii ATCC
           33641]
 gi|238721670|gb|EEQ13335.1| hypothetical protein yfred0001_31620 [Yersinia frederiksenii ATCC
           33641]
          Length = 575

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   SI     T V++  +  + A    +I + GHTD       ++ N  LSL RA 
Sbjct: 443 SLFDVGQSILKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDSQSNQILSLKRAE 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           S    +  +G   +    + G+   R   ++D     + NRR++I +  +
Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGESRPLKSNDTEAGRALNRRVEISLVPQ 549


>gi|301063232|ref|ZP_07203781.1| OmpA family protein [delta proteobacterium NaphS2]
 gi|300442660|gb|EFK06876.1| OmpA family protein [delta proteobacterium NaphS2]
          Length = 214

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S    PE+  +L+++G+ LA       +I I GHTD+       + N RLSLDRA 
Sbjct: 108 FDVNSYTIRPESYNLLRELGKALADPRLRDRIIIINGHTDSD---GKEKYNVRLSLDRAA 164

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +    L+   GV+ DR+  + G+        +    +   NRR++I+ E +
Sbjct: 165 AVKTYLIDHCGVAPDRLE-VVGYGESMPLTPNTSKENKQLNRRVEIVAEKK 214


>gi|332283816|ref|YP_004415727.1| OmpA/MotB domain protein [Pusillimonas sp. T7-7]
 gi|330427769|gb|AEC19103.1| OmpA/MotB domain protein [Pusillimonas sp. T7-7]
          Length = 223

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L     L  +   R ++  ++IS  L   +A  + +G +         I I     + +
Sbjct: 41  QLELSAKLEEEVLHRQEETQRRIS--LEQALARPLAEGSVTLIDG---RIGIS---GSVL 92

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289
           F  +S+    E   VL+ +   L+       +++ + G TD        R   DNW LS 
Sbjct: 93  FALNSAQLQAEGHDVLESLVAPLSDYLQSHDQILMVSGFTDDQQVLQGNRRFDDNWDLSA 152

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDI 336
            RA +  + L+ +G+    +   +  A   +   A +   + NRR++I
Sbjct: 153 QRALTVTRALIAAGIPSSSVFAAAFGAEQPVASNADEQGRAKNRRVEI 200


>gi|256830501|ref|YP_003159229.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579677|gb|ACU90813.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 260

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 18/144 (12%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K + FE+ R    +SI       +F   S+        +L ++  V+  S+  + + GHT
Sbjct: 84  KDLRFESNRFMQRLSIGAD---ALFAPGSADLTAGGRSLLDRLRPVVMESSHPLGLSGHT 140

Query: 273 D-----------ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
                       A P+  +    W LSL R  + Y+  +++GV  +++ ++  F   R +
Sbjct: 141 SEGMDEFGPDYLAKPWIKVDFS-WELSLARVMAVYKYFIETGVEPEKL-RLEAFGRFRPR 198

Query: 322 IASDP--MNSANRRIDILVEDRQG 343
           + ++       NRR++I ++ R G
Sbjct: 199 LTTEAPGERQTNRRVEITLDRRVG 222



 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93
            I ++D +T++M FF+V+  + +  D  K+ +            T +  + D      R+
Sbjct: 1   MITFSDLVTLMMTFFIVLVSMASLTDIYKRKVA--IGSVSGTFGTGAPSMNDLTTVDTRT 58

Query: 94  SQNKIDLSIDEHITK--------NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
             +   +++ + ++            DL+  S    ++     + +F   ++  +   ++
Sbjct: 59  QVDPGPINVFKDLSPVRDHLWEDPDKDLRFESNRFMQRLSIGADALFAPGSADLTAGGRS 118

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            L R      +      L    ++  + F P  
Sbjct: 119 LLDRLRPVVMESSHPLGLSGHTSEGMDEFGPDY 151


>gi|163759606|ref|ZP_02166691.1| OmpA/MotB [Hoeflea phototrophica DFL-43]
 gi|162283203|gb|EDQ33489.1| OmpA/MotB [Hoeflea phototrophica DFL-43]
          Length = 215

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD   S   P+    L  +  VL       + + G
Sbjct: 87  LQGTGVSVTRVGDKI-ILNMPSNITFDSDQSAVKPQFYETLNSVALVLQKFNRSLVDVAG 145

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           HTD++        N  LS  RA S    L+  G    R     GF   R    +  D   
Sbjct: 146 HTDST---GSDSYNLTLSQQRAQSVSSYLISQGNDARRFY-TQGFGESRPIADNGTDAGR 201

Query: 329 SANRRIDILV 338
           +ANRR++I +
Sbjct: 202 AANRRVEIQI 211


>gi|320173827|gb|EFW49008.1| putative outer membrane lipoprotein [Shigella dysenteriae CDC
           74-1112]
          Length = 195

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 59  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 117

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 118 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 173

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 174 ASNSTAEGKAQNRRVEITL 192


>gi|149185339|ref|ZP_01863656.1| outer membrane protein [Erythrobacter sp. SD-21]
 gi|148831450|gb|EDL49884.1| outer membrane protein [Erythrobacter sp. SD-21]
          Length = 210

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   +  L       G+    T  G  I +++  +   F   S+         L  +  
Sbjct: 55  RMDQQIKELEEQTAGSGIDVSETDGGNAI-LVNLPDGVTFATGSATINSAFRNTLDNVAA 113

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L       I + G+TD +        N RLS  RA +    L+  GVS  RI +  G+ 
Sbjct: 114 NLVQYPNSLIDVYGYTDTT---GSDSLNQRLSEQRAQAVANYLISRGVSSSRI-RWQGYG 169

Query: 317 HH----RLKIASDPMNSANRRIDILVED 340
                 ++K A       NRR++I +  
Sbjct: 170 EQYEHLKVKTADGVNEPMNRRVEIKIIP 197


>gi|62290115|ref|YP_221908.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700038|ref|YP_414612.1| outer membrane protein MotY [Brucella melitensis biovar Abortus
           2308]
 gi|189024353|ref|YP_001935121.1| outer membrane protein [Brucella abortus S19]
 gi|254689424|ref|ZP_05152678.1| Bacterial outer membrane protein [Brucella abortus bv. 6 str. 870]
 gi|254697559|ref|ZP_05159387.1| Bacterial outer membrane protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730453|ref|ZP_05189031.1| Bacterial outer membrane protein [Brucella abortus bv. 4 str. 292]
 gi|256257670|ref|ZP_05463206.1| Bacterial outer membrane protein [Brucella abortus bv. 9 str. C68]
 gi|260546663|ref|ZP_05822402.1| bacterial outer membrane protein [Brucella abortus NCTC 8038]
 gi|260754947|ref|ZP_05867295.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|260758163|ref|ZP_05870511.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260761989|ref|ZP_05874332.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62196247|gb|AAX74547.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616139|emb|CAJ11182.1| MotY protein:Bacterial outer membrane protein:OmpA/MotB domain
           [Brucella melitensis biovar Abortus 2308]
 gi|189019925|gb|ACD72647.1| Bacterial outer membrane protein [Brucella abortus S19]
 gi|260095713|gb|EEW79590.1| bacterial outer membrane protein [Brucella abortus NCTC 8038]
 gi|260668481|gb|EEX55421.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|260672421|gb|EEX59242.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675055|gb|EEX61876.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str.
           870]
          Length = 220

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 90  LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +  +++      
Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 204

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 205 AQNRRVEIQISPLRG 219


>gi|146308382|ref|YP_001188847.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145576583|gb|ABP86115.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 261

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S       +   NN   L +  QS       T+++++  +      +E+   K+      
Sbjct: 21  SHQPNANLESARNNFSTLQSDPQSNKLAALETKEAQEWLNKADKAYMERDDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRAAENELKNTSAQRAKALLDARDAQIRKLQDSLNAKQTERGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +      +  + ++   L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKAELKSSALPNVTQLARFLQENPERQVIVEGYTDSV---GSASYNQG 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           LS  RA S  + L+++GV   RI    G+         +SD   + NRR+++ + +
Sbjct: 194 LSERRAESVRRALIRAGVEPTRIVA-QGYGKEYPVADNSSDSGRAQNRRVEVTISN 248


>gi|15804098|ref|NP_290137.1| putative outer membrane lipoprotein [Escherichia coli O157:H7
           EDL933]
 gi|15833691|ref|NP_312464.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|26250192|ref|NP_756232.1| putative outer membrane lipoprotein [Escherichia coli CFT073]
 gi|49176370|ref|YP_026228.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89110462|ref|AP_004242.1| predicted outer membrane lipoprotien [Escherichia coli str. K-12
           substr. W3110]
 gi|110643800|ref|YP_671530.1| putative outer membrane lipoprotein [Escherichia coli 536]
 gi|157158823|ref|YP_001465027.1| putative outer membrane lipoprotein [Escherichia coli E24377A]
 gi|157163027|ref|YP_001460345.1| putative outer membrane lipoprotein [Escherichia coli HS]
 gi|168746904|ref|ZP_02771926.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168753370|ref|ZP_02778377.1| OmpA family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168759642|ref|ZP_02784649.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168765965|ref|ZP_02790972.1| OmpA family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168772488|ref|ZP_02797495.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168779701|ref|ZP_02804708.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168785422|ref|ZP_02810429.1| OmpA family protein [Escherichia coli O157:H7 str. EC869]
 gi|168797388|ref|ZP_02822395.1| OmpA family protein [Escherichia coli O157:H7 str. EC508]
 gi|170018219|ref|YP_001723173.1| putative outer membrane lipoprotein [Escherichia coli ATCC 8739]
 gi|170083060|ref|YP_001732380.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170680831|ref|YP_001745838.1| putative outer membrane lipoprotein [Escherichia coli SMS-3-5]
 gi|170766985|ref|ZP_02901438.1| OmpA family protein [Escherichia albertii TW07627]
 gi|188495948|ref|ZP_03003218.1| OmpA family protein [Escherichia coli 53638]
 gi|191165316|ref|ZP_03027159.1| OmpA family protein [Escherichia coli B7A]
 gi|191170332|ref|ZP_03031885.1| OmpA family protein [Escherichia coli F11]
 gi|193061844|ref|ZP_03042941.1| OmpA family protein [Escherichia coli E22]
 gi|193068535|ref|ZP_03049497.1| OmpA family protein [Escherichia coli E110019]
 gi|194427518|ref|ZP_03060067.1| OmpA family protein [Escherichia coli B171]
 gi|194435666|ref|ZP_03067769.1| OmpA family protein [Escherichia coli 101-1]
 gi|195935083|ref|ZP_03080465.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808020|ref|ZP_03250357.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208812888|ref|ZP_03254217.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208819372|ref|ZP_03259692.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400986|ref|YP_002273038.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115]
 gi|209921016|ref|YP_002295100.1| putative outer membrane lipoprotein [Escherichia coli SE11]
 gi|215488837|ref|YP_002331268.1| putative outer membrane lipoprotein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326256|ref|ZP_03442340.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588]
 gi|218556112|ref|YP_002389025.1| putative outer membrane lipoprotein [Escherichia coli IAI1]
 gi|218691843|ref|YP_002400055.1| putative outer membrane lipoprotein [Escherichia coli ED1a]
 gi|218697269|ref|YP_002404936.1| putative outer membrane lipoprotein [Escherichia coli 55989]
 gi|218702317|ref|YP_002409946.1| putative outer membrane lipoprotein [Escherichia coli IAI39]
 gi|218707187|ref|YP_002414706.1| putative outer membrane lipoprotein [Escherichia coli UMN026]
 gi|227883718|ref|ZP_04001523.1| outer membrane lipoprotein [Escherichia coli 83972]
 gi|238902640|ref|YP_002928436.1| putative outer membrane lipoprotein [Escherichia coli BW2952]
 gi|254795509|ref|YP_003080346.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020901|ref|ZP_05434766.1| putative outer membrane lipoprotein [Shigella sp. D9]
 gi|256025721|ref|ZP_05439586.1| putative outer membrane lipoprotein [Escherichia sp. 4_1_40B]
 gi|260846733|ref|YP_003224511.1| putative outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
 gi|260858052|ref|YP_003231943.1| putative outer membrane lipoprotein [Escherichia coli O26:H11 str.
           11368]
 gi|260870283|ref|YP_003236685.1| putative outer membrane lipoprotein [Escherichia coli O111:H- str.
           11128]
 gi|261224871|ref|ZP_05939152.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254230|ref|ZP_05946763.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284929|ref|YP_003501747.1| Inner membrane lipoprotein yiaD precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|293407175|ref|ZP_06651099.1| outer membrane lipoprotein [Escherichia coli FVEC1412]
 gi|293417001|ref|ZP_06659638.1| outer membrane lipoprotein [Escherichia coli B185]
 gi|293453862|ref|ZP_06664281.1| outer membrane lipoprotein [Escherichia coli B088]
 gi|298382924|ref|ZP_06992519.1| outer membrane lipoprotein [Escherichia coli FVEC1302]
 gi|300815222|ref|ZP_07095447.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|300822046|ref|ZP_07102189.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300898736|ref|ZP_07117047.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|300920432|ref|ZP_07136866.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300925626|ref|ZP_07141493.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300937157|ref|ZP_07152011.1| OmpA family protein [Escherichia coli MS 21-1]
 gi|300971377|ref|ZP_07171446.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|300976951|ref|ZP_07173686.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|301026191|ref|ZP_07189658.1| OmpA family protein [Escherichia coli MS 69-1]
 gi|301028182|ref|ZP_07191452.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|301304604|ref|ZP_07210713.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|301646016|ref|ZP_07245922.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|307140242|ref|ZP_07499598.1| putative outer membrane lipoprotein [Escherichia coli H736]
 gi|307314313|ref|ZP_07593920.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|309796193|ref|ZP_07690604.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|312968105|ref|ZP_07782316.1| inner membrane lipoprotein yiaD [Escherichia coli 2362-75]
 gi|312972173|ref|ZP_07786347.1| inner membrane lipoprotein yiaD [Escherichia coli 1827-70]
 gi|331644263|ref|ZP_08345392.1| inner membrane lipoprotein YiaD [Escherichia coli H736]
 gi|331655189|ref|ZP_08356188.1| inner membrane lipoprotein YiaD [Escherichia coli M718]
 gi|331659868|ref|ZP_08360806.1| inner membrane lipoprotein YiaD [Escherichia coli TA206]
 gi|331665175|ref|ZP_08366076.1| inner membrane lipoprotein YiaD [Escherichia coli TA143]
 gi|331670386|ref|ZP_08371225.1| inner membrane lipoprotein YiaD [Escherichia coli TA271]
 gi|331675043|ref|ZP_08375800.1| inner membrane lipoprotein YiaD [Escherichia coli TA280]
 gi|331679633|ref|ZP_08380303.1| inner membrane lipoprotein YiaD [Escherichia coli H591]
 gi|331685215|ref|ZP_08385801.1| inner membrane lipoprotein YiaD [Escherichia coli H299]
 gi|332282119|ref|ZP_08394532.1| OmpA family protein [Shigella sp. D9]
 gi|54042327|sp|P37665|YIAD_ECOLI RecName: Full=Inner membrane lipoprotein yiaD; Flags: Precursor
 gi|12518287|gb|AAG58701.1|AE005582_4 putative outer membrane protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110621|gb|AAN82806.1|AE016768_224 Hypothetical lipoprotein yiaD precursor [Escherichia coli CFT073]
 gi|13363911|dbj|BAB37860.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|48994946|gb|AAT48190.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85676493|dbj|BAE77743.1| predicted outer membrane lipoprotien [Escherichia coli str. K12
           substr. W3110]
 gi|110345392|gb|ABG71629.1| putative outer membrane lipoprotein [Escherichia coli 536]
 gi|157068707|gb|ABV07962.1| OmpA family protein [Escherichia coli HS]
 gi|157080853|gb|ABV20561.1| OmpA family protein [Escherichia coli E24377A]
 gi|169753147|gb|ACA75846.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|169890895|gb|ACB04602.1| predicted outer membrane lipoprotein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170124423|gb|EDS93354.1| OmpA family protein [Escherichia albertii TW07627]
 gi|170518549|gb|ACB16727.1| OmpA family protein [Escherichia coli SMS-3-5]
 gi|187771758|gb|EDU35602.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188018309|gb|EDU56431.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188491147|gb|EDU66250.1| OmpA family protein [Escherichia coli 53638]
 gi|189002241|gb|EDU71227.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189358800|gb|EDU77219.1| OmpA family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189364720|gb|EDU83139.1| OmpA family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189369665|gb|EDU88081.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189374556|gb|EDU92972.1| OmpA family protein [Escherichia coli O157:H7 str. EC869]
 gi|189380056|gb|EDU98472.1| OmpA family protein [Escherichia coli O157:H7 str. EC508]
 gi|190904718|gb|EDV64424.1| OmpA family protein [Escherichia coli B7A]
 gi|190909140|gb|EDV68726.1| OmpA family protein [Escherichia coli F11]
 gi|192932634|gb|EDV85231.1| OmpA family protein [Escherichia coli E22]
 gi|192958186|gb|EDV88627.1| OmpA family protein [Escherichia coli E110019]
 gi|194414558|gb|EDX30831.1| OmpA family protein [Escherichia coli B171]
 gi|194425209|gb|EDX41193.1| OmpA family protein [Escherichia coli 101-1]
 gi|208727821|gb|EDZ77422.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734165|gb|EDZ82852.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208739495|gb|EDZ87177.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209162386|gb|ACI39819.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115]
 gi|209755238|gb|ACI75931.1| putative outer membrane protein [Escherichia coli]
 gi|209755240|gb|ACI75932.1| putative outer membrane protein [Escherichia coli]
 gi|209755242|gb|ACI75933.1| putative outer membrane protein [Escherichia coli]
 gi|209755244|gb|ACI75934.1| putative outer membrane protein [Escherichia coli]
 gi|209755246|gb|ACI75935.1| putative outer membrane protein [Escherichia coli]
 gi|209914275|dbj|BAG79349.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215266909|emb|CAS11352.1| predicted outer membrane lipoprotien [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322477|gb|EEC30901.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588]
 gi|218354001|emb|CAV00488.1| putative outer membrane lipoprotien [Escherichia coli 55989]
 gi|218362880|emb|CAR00514.1| putative outer membrane lipoprotien [Escherichia coli IAI1]
 gi|218372303|emb|CAR20168.1| putative outer membrane lipoprotien [Escherichia coli IAI39]
 gi|218429407|emb|CAR10226.1| putative outer membrane lipoprotien [Escherichia coli ED1a]
 gi|218434284|emb|CAR15206.1| putative outer membrane lipoprotien [Escherichia coli UMN026]
 gi|227839298|gb|EEJ49764.1| outer membrane lipoprotein [Escherichia coli 83972]
 gi|238862715|gb|ACR64713.1| predicted outer membrane lipoprotein [Escherichia coli BW2952]
 gi|254594909|gb|ACT74270.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359]
 gi|257756701|dbj|BAI28203.1| predicted outer membrane lipoprotein [Escherichia coli O26:H11 str.
           11368]
 gi|257761880|dbj|BAI33377.1| predicted outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
 gi|257766639|dbj|BAI38134.1| predicted outer membrane lipoprotein [Escherichia coli O111:H- str.
           11128]
 gi|260447432|gb|ACX37854.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|284923586|emb|CBG36682.1| putative outer membrane protein [Escherichia coli 042]
 gi|290764802|gb|ADD58763.1| Inner membrane lipoprotein yiaD precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|291321988|gb|EFE61419.1| outer membrane lipoprotein [Escherichia coli B088]
 gi|291425986|gb|EFE99020.1| outer membrane lipoprotein [Escherichia coli FVEC1412]
 gi|291431577|gb|EFF04562.1| outer membrane lipoprotein [Escherichia coli B185]
 gi|298276760|gb|EFI18278.1| outer membrane lipoprotein [Escherichia coli FVEC1302]
 gi|299878738|gb|EFI86949.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|300308421|gb|EFJ62941.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|300357615|gb|EFJ73485.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|300395632|gb|EFJ79170.1| OmpA family protein [Escherichia coli MS 69-1]
 gi|300411301|gb|EFJ94839.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|300412565|gb|EFJ95875.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300418280|gb|EFK01591.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300457770|gb|EFK21263.1| OmpA family protein [Escherichia coli MS 21-1]
 gi|300525409|gb|EFK46478.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300532114|gb|EFK53176.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|300840082|gb|EFK67842.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|301075768|gb|EFK90574.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|306906028|gb|EFN36548.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|307555658|gb|ADN48433.1| putative outer membrane protein [Escherichia coli ABU 83972]
 gi|308120254|gb|EFO57516.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|310334550|gb|EFQ00755.1| inner membrane lipoprotein yiaD [Escherichia coli 1827-70]
 gi|312287364|gb|EFR15273.1| inner membrane lipoprotein yiaD [Escherichia coli 2362-75]
 gi|315062837|gb|ADT77164.1| predicted outer membrane lipoprotein [Escherichia coli W]
 gi|315138128|dbj|BAJ45287.1| inner membrane lipoprotein yiaD precursor [Escherichia coli DH1]
 gi|315254081|gb|EFU34049.1| OmpA family protein [Escherichia coli MS 85-1]
 gi|315294130|gb|EFU53482.1| OmpA family protein [Escherichia coli MS 153-1]
 gi|315300095|gb|EFU59333.1| OmpA family protein [Escherichia coli MS 16-3]
 gi|315618412|gb|EFU98999.1| inner membrane lipoprotein yiaD [Escherichia coli 3431]
 gi|320191391|gb|EFW66041.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320201426|gb|EFW76007.1| putative outer membrane protein [Escherichia coli EC4100B]
 gi|320639873|gb|EFX09467.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           G5101]
 gi|320645036|gb|EFX14060.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str.
           493-89]
 gi|320650303|gb|EFX18786.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str.
           H 2687]
 gi|320655878|gb|EFX23801.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661658|gb|EFX29073.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666682|gb|EFX33665.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323153881|gb|EFZ40115.1| inner membrane lipoprotein yiaD [Escherichia coli EPECa14]
 gi|323160679|gb|EFZ46618.1| inner membrane lipoprotein yiaD [Escherichia coli E128010]
 gi|323174210|gb|EFZ59838.1| inner membrane lipoprotein yiaD [Escherichia coli LT-68]
 gi|323179484|gb|EFZ65051.1| inner membrane lipoprotein yiaD [Escherichia coli 1180]
 gi|323182708|gb|EFZ68110.1| inner membrane lipoprotein yiaD [Escherichia coli 1357]
 gi|323376572|gb|ADX48840.1| OmpA/MotB domain protein [Escherichia coli KO11]
 gi|323934746|gb|EGB31133.1| OmpA family protein [Escherichia coli E1520]
 gi|323939549|gb|EGB35757.1| OmpA family protein [Escherichia coli E482]
 gi|323944551|gb|EGB40622.1| OmpA family protein [Escherichia coli H120]
 gi|323959435|gb|EGB55094.1| OmpA family protein [Escherichia coli H489]
 gi|323966022|gb|EGB61463.1| OmpA family protein [Escherichia coli M863]
 gi|323971357|gb|EGB66598.1| OmpA family protein [Escherichia coli TA007]
 gi|323975035|gb|EGB70144.1| OmpA family protein [Escherichia coli TW10509]
 gi|324007339|gb|EGB76558.1| OmpA family protein [Escherichia coli MS 57-2]
 gi|324014213|gb|EGB83432.1| OmpA family protein [Escherichia coli MS 60-1]
 gi|324021134|gb|EGB90353.1| OmpA family protein [Escherichia coli MS 117-3]
 gi|324116568|gb|EGC10485.1| OmpA family protein [Escherichia coli E1167]
 gi|326337443|gb|EGD61278.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           1044]
 gi|326339968|gb|EGD63775.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           1125]
 gi|327251203|gb|EGE62896.1| inner membrane lipoprotein yiaD [Escherichia coli STEC_7v]
 gi|331036557|gb|EGI08783.1| inner membrane lipoprotein YiaD [Escherichia coli H736]
 gi|331047204|gb|EGI19282.1| inner membrane lipoprotein YiaD [Escherichia coli M718]
 gi|331053083|gb|EGI25116.1| inner membrane lipoprotein YiaD [Escherichia coli TA206]
 gi|331057685|gb|EGI29671.1| inner membrane lipoprotein YiaD [Escherichia coli TA143]
 gi|331062448|gb|EGI34368.1| inner membrane lipoprotein YiaD [Escherichia coli TA271]
 gi|331067952|gb|EGI39350.1| inner membrane lipoprotein YiaD [Escherichia coli TA280]
 gi|331072805|gb|EGI44130.1| inner membrane lipoprotein YiaD [Escherichia coli H591]
 gi|331077586|gb|EGI48798.1| inner membrane lipoprotein YiaD [Escherichia coli H299]
 gi|332104471|gb|EGJ07817.1| OmpA family protein [Shigella sp. D9]
 gi|332345519|gb|AEE58853.1| inner membrane lipoprotein YiaD [Escherichia coli UMNK88]
          Length = 219

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|110637965|ref|YP_678172.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280646|gb|ABG58832.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 641

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
             I   +  +    G  I +    N   FD + S    E+   L K+ ++L+ + +  I 
Sbjct: 514 KEIDDVICLDKIDIGTTIVL----NNVFFDVNKSTLRKESETELDKLFDILSKNPKIKIE 569

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-P 326
           + GHTD+       + N  LS  RA++    L+  G+S DRI  + G    +  + +D P
Sbjct: 570 VAGHTDSD---GDTQANLTLSDARAHTVKDYLIGKGISADRIIYV-GHGEGKPVVPNDTP 625

Query: 327 MN-SANRRIDILVED 340
            N   NRR +I + +
Sbjct: 626 ENKQLNRRTEIKILE 640


>gi|157156833|ref|YP_001464142.1| OmpA domain-containing protein [Escherichia coli E24377A]
 gi|157078863|gb|ABV18571.1| OmpA domain protein [Escherichia coli E24377A]
          Length = 550

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EQIRQPVLRAIRDYRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|330752331|emb|CBL87285.1| protein with similarity to outer membrane OmpA family protein
           [uncultured Flavobacteria bacterium]
          Length = 266

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 11/148 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A+ I   L+  +     K    E  + G  I +       +F    +     +   L ++
Sbjct: 126 AQSIKLELNKAIPKQKKKWFERELVK-GDKIRL----KNILFVGGEARFRAVSYKDLNQL 180

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             V+       I + GH   SP +     N  LS  RA +  + L+K G+ E R+S I G
Sbjct: 181 LAVMNAYPNLKILVEGHV-NSPGKRNTNTNQVLSTQRAEAVVKYLIKKGIRESRLSFI-G 238

Query: 315 FAHHRLKIASDPMNSA---NRRIDILVE 339
           F + ++   +  +      NRR++ILV+
Sbjct: 239 FGNTKMIYPNTKLEYEMQFNRRVEILVQ 266


>gi|262068012|ref|ZP_06027624.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378280|gb|EFE85798.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 212

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            + A+++ + L G  A+              +++++        F   S+         L
Sbjct: 74  DNQARELKAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             + + L    E  I + G+TD++        N  LS  RA +  Q  +  GVS +RI  
Sbjct: 124 NGVAQTLVKYPETRIQVNGYTDST---GGDAHNLDLSQRRANAVAQYFIAQGVSSNRIVA 180

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +GF       ++       ANRR+++ +   Q
Sbjct: 181 -NGFGSSNPIASNATPEGRQANRRVEVRILPAQ 212


>gi|156936614|ref|YP_001440528.1| hypothetical protein ESA_pESA3p05495 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534868|gb|ABU79692.1| hypothetical protein ESA_pESA3p05495 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 567

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 13/158 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-L 245
           + +K +  L   IS   + + +  + K ++ E     I +         +FD        
Sbjct: 398 QGEKLIPPLDAAISDWSAPVSSPPVNKNIITE--PQTIRL-----DALSLFDTGQWRLKT 450

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
             T V++  +  + A    +I + GHTD        R N +LSL RA +    +  +G  
Sbjct: 451 GSTKVLVNALVGIKARPGWLIVVAGHTDDV---GDERANQQLSLKRAEAVRDWMRGTGDV 507

Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            +    + G+   R  + +      + NRR++I +  +
Sbjct: 508 PESCFAVQGYGESRPAVPNTTAEGRALNRRVEISLVPQ 545


>gi|297537693|ref|YP_003673462.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297257040|gb|ADI28885.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 224

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 16/151 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR ++  +++    +G              T+T      +D  +   F    +   P   
Sbjct: 73  KRQEEQKRQMEEATAGT---------GVAVTQTADNRLKLDIPSDISFAVGRADVQPNFR 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L      L  +    ++I GHTD++    +      LSL+RA S    L    V+ +R
Sbjct: 124 AILDTFANGLVTNPNSNVTIIGHTDSTGSDAVNNP---LSLNRAASVRDYLTSKRVASNR 180

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           I+ I G       +A+D     + NRR++I 
Sbjct: 181 IT-IDGRGSREPLVANDTAANKAKNRRVEIF 210


>gi|89899024|ref|YP_521495.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89343761|gb|ABD67964.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 217

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     P    +L +  + L+      I I GHTD++   +I      LS++RA SA
Sbjct: 110 FDINRFDIKPNMRPILDQFAQGLSSQPNTEIRIIGHTDSTGSDSINDP---LSVNRAASA 166

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
              L+  GV   RI +I+G   H     ++     + NRRI+I + +R
Sbjct: 167 RDYLVARGVDGRRI-QINGRGSHEPIADNNTERGRAQNRRIEIFLAER 213


>gi|315635918|ref|ZP_07891180.1| outer membrane fibronectin-binding protein [Arcobacter butzleri
           JV22]
 gi|315479897|gb|EFU70568.1| outer membrane fibronectin-binding protein [Arcobacter butzleri
           JV22]
          Length = 338

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +         + +  +V+    +   +I  HTD+         N +LS  RA SA
Sbjct: 236 FDTAKADIKDSYNSRINEFAKVMKADPKLKANIEAHTDSV---GTDAYNQKLSERRATSA 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L+ +GV +DRI  + G+   R   ++D     + NRR++
Sbjct: 293 VNALVAAGVEKDRIKAV-GYGESRPIASNDTVEGRAENRRVE 333


>gi|323525137|ref|YP_004227290.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323382139|gb|ADX54230.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 217

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + L  + EVI+ + GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D++        N  LS++RA S    L + GV+  R+S   G   ++     +++   +A
Sbjct: 145 DST---GQPAYNQTLSVNRAQSVVGFLEQRGVAPQRLSA-QGMGQNQPIADNSTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|152969879|ref|YP_001334988.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954728|gb|ABR76758.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 568

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETI 249
           R + +   +   + G V        +       I +      +  +FD    +  P  T 
Sbjct: 398 RGEQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTK 452

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            ++  + ++ A    +I + GHTD+       + N  LSL RA S    +  +G   D  
Sbjct: 453 RLVNSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSC 509

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             + G+   R    +D     + NRR++I +  +
Sbjct: 510 FAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543


>gi|84500108|ref|ZP_00998374.1| flagellar motor protein [Oceanicola batsensis HTCC2597]
 gi|84392042|gb|EAQ04310.1| flagellar motor protein [Oceanicola batsensis HTCC2597]
          Length = 852

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 93/291 (31%), Gaps = 27/291 (9%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           +D ++ +        +    A + + + +       Q   +L  ++  + ++        
Sbjct: 571 EDLRRQLAAALAAKLEAERAAEESMSEAEQRAALLRQATQELESEQASSADAARRTTVLN 630

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q  Q +   +++  L +  +     N +   S                 +         
Sbjct: 631 QQVAQLRAQLSSLQALLDDYKDRDAANQVQIQSLGSDLNAALAQKAAEERRRRQLEEAER 690

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            + +  A + +K   +   ++    +G     IV      ++               +FD
Sbjct: 691 RRLEAEAERLQKYRSEFFGQLRDVFAGQEGVKIVGDRFVFSSE-------------VLFD 737

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA--RDNWRLS 288
              +         +  I   L    + I         + GHTD  P       +DNW LS
Sbjct: 738 PGQADLSEGGQRQIAGIAATLRSLADEIPEGIDWVLRVDGHTDDVPLSGQGEFQDNWELS 797

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
             RA S  + +    G   DR++  +GF  H+   + D     +ANRRI++
Sbjct: 798 QARALSVVRYMEDFLGFPPDRLAA-NGFGEHQPIASGDSEAARAANRRIEL 847


>gi|193065118|ref|ZP_03046192.1| OmpA domain protein [Escherichia coli E22]
 gi|194426303|ref|ZP_03058858.1| OmpA domain protein [Escherichia coli B171]
 gi|260845464|ref|YP_003223242.1| putative outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
 gi|192927249|gb|EDV81869.1| OmpA domain protein [Escherichia coli E22]
 gi|194415611|gb|EDX31878.1| OmpA domain protein [Escherichia coli B171]
 gi|257760611|dbj|BAI32108.1| predicted outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
          Length = 550

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|254038735|ref|ZP_04872791.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226839241|gb|EEH71264.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|309703955|emb|CBJ03298.1| putative outer membrane protein [Escherichia coli ETEC H10407]
          Length = 219

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|45656435|ref|YP_000521.1| peptidoglycan associated periplasmic protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45599670|gb|AAS69158.1| peptidoglycan associated periplasmic protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 660

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           I I    N   F+  S    PE+   L ++ E++  + +  I I GHTD        +DN
Sbjct: 547 IQI----NNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNI---GKKKDN 599

Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             LS  RA +  + L  K  +S+ RI +  GF        +D   +   NRR++  +  +
Sbjct: 600 LILSEKRAAAVAEYLFQKHSISKTRI-QTKGFGDSVPLSKNDSEEARKKNRRVNFTILKK 658


>gi|24216384|ref|NP_713865.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24197668|gb|AAN50883.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
          Length = 660

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           I I    N   F+  S    PE+   L ++ E++  + +  I I GHTD        +DN
Sbjct: 547 IQI----NNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNI---GKKKDN 599

Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             LS  RA +  + L  K  +S+ RI +  GF        +D   +   NRR++  +  +
Sbjct: 600 LILSEKRAAAVAEYLFQKHSISKTRI-QTKGFGDSVPLSKNDSEEARKKNRRVNFTILKK 658


>gi|308273523|emb|CBX30125.1| hypothetical protein N47_D29340 [uncultured Desulfobacterium sp.]
          Length = 212

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             KI     G + +N    +  +T   G    ++      +F  +  +  PE+  +L+K+
Sbjct: 42  KGKILEKALGGINENANDDIGIKT---GAGREVLTMGEKALFYTNRHLLKPESFALLKKV 98

Query: 256 GEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
           G  +      + I GHTD           NW +S   A    +  ++   +  DRI+   
Sbjct: 99  GNFINQGNYKVLIVGHTDNRDAQEKGYNSNWEISSLMAVQLQKYFIEECKIKPDRITA-Y 157

Query: 314 GFAHHRLKIASDP--MNSANRRIDIL 337
           G+   +   ++D       NRRI+I+
Sbjct: 158 GYGSQQPAASNDTPESRQKNRRIEII 183


>gi|237740687|ref|ZP_04571168.1| outer membrane protein [Fusobacterium sp. 2_1_31]
 gi|229422704|gb|EEO37751.1| outer membrane protein [Fusobacterium sp. 2_1_31]
          Length = 212

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            + A+++ + L G  A+              +++++        F   S+         L
Sbjct: 74  DNQARELRAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             + + L    E  I + G+TD++        N  LS  RA S  Q L+  GVS  RI  
Sbjct: 124 NGVAQTLVRYPETRIQVNGYTDST---GGDAHNQELSQRRANSVAQYLISQGVSSSRIVA 180

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +GF       ++       ANRR+++ +   Q
Sbjct: 181 -NGFGSSNPIASNATPEGRQANRRVEVRILPAQ 212


>gi|330993344|ref|ZP_08317279.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
 gi|329759374|gb|EGG75883.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
          Length = 368

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +     +  ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 260 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTAAHPGPRGQQYNLGLSMRR 319

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV  + I  I G+      + +  D     NRR++I++
Sbjct: 320 ADSVKAELIRDGVPANAID-IHGYGEAHPLVPTGPDTREPQNRRVEIIL 367


>gi|300950898|ref|ZP_07164778.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|300449827|gb|EFK13447.1| OmpA family protein [Escherichia coli MS 116-1]
          Length = 217

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|296115020|ref|ZP_06833663.1| outer membrane protein OmpA [Gluconacetobacter hansenii ATCC 23769]
 gi|295978438|gb|EFG85173.1| outer membrane protein OmpA [Gluconacetobacter hansenii ATCC 23769]
          Length = 392

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +        ++ +  +   H  T  I + G+TD   A P     + N  LSL R
Sbjct: 284 FFDWDGAALTGRAREIVAEAAQASTHVQTTRIEVNGYTDNSAAQPGPRGQQYNMGLSLRR 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV  + I  I G+      + +  D     NRR++I++
Sbjct: 344 ANSVKAELIRDGVPANAID-IQGYGEAHPLVPTGPDTREPQNRRVEIIL 391


>gi|293194235|ref|ZP_06609957.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus
           F0309]
 gi|292819754|gb|EFF78767.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus
           F0309]
          Length = 235

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281
           G +I++ D     +FD   S    +    L K+  VL  +    + I GHTD+    +  
Sbjct: 116 GTVITLED---GVLFDFGKSDIRSDAAHTLSKLATVLNDAKVPAAHIYGHTDSI---SDE 169

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333
             N +LS +RA +    L K GVS   I   +G+   +    ++           + NRR
Sbjct: 170 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 227

Query: 334 IDILV 338
           ++I +
Sbjct: 228 VEIFI 232


>gi|307728928|ref|YP_003906152.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583463|gb|ADN56861.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 217

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + L  + EVI+ + GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++        N  LS++RA S    L + GV+  R+S   G   ++    ++     +A
Sbjct: 145 DST---GQPAYNQTLSVNRAQSVVSFLEQRGVAAQRLSA-QGMGQNQPIADNNTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|254786261|ref|YP_003073690.1| hypothetical protein TERTU_2240 [Teredinibacter turnerae T7901]
 gi|237686902|gb|ACR14166.1| conserved repeat domain protein [Teredinibacter turnerae T7901]
          Length = 3228

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 10/148 (6%)

Query: 194  DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             +  +I      + A+   + V+       +            F  +S+         LQ
Sbjct: 3079 KVVAEIPEAKPAIPAEPAKEYVVISKDDCAL---FSGTLEGVTFATASAQLTEAAQHTLQ 3135

Query: 254  KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
               + L       ISIR HTDA      A DN  LS  RA +  Q  + +GV  +R+S  
Sbjct: 3136 NAVDALQRYPRLAISIRAHTDAV---GKAEDNLALSEARALAVQQFFVAAGVDNERLSA- 3191

Query: 313  SGFAHHRLK--IASDPMNSANRRIDILV 338
             G+         ++    + NRR+++ +
Sbjct: 3192 RGYGEAEPVADNSTAAGRAQNRRVELKL 3219


>gi|237815623|ref|ZP_04594620.1| OmpA family protein [Brucella abortus str. 2308 A]
 gi|237788921|gb|EEP63132.1| OmpA family protein [Brucella abortus str. 2308 A]
          Length = 243

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +  +++      
Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 227

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 228 AQNRRVEIQISPLRG 242


>gi|82545917|ref|YP_409864.1| outer membrane lipoprotein [Shigella boydii Sb227]
 gi|187734257|ref|YP_001882255.1| putative outer membrane lipoprotein [Shigella boydii CDC 3083-94]
 gi|81247328|gb|ABB68036.1| putative outer membrane protein [Shigella boydii Sb227]
 gi|187431249|gb|ACD10523.1| OmpA family protein [Shigella boydii CDC 3083-94]
 gi|320187083|gb|EFW61791.1| Outer membrane protein A precursor [Shigella flexneri CDC 796-83]
 gi|332089323|gb|EGI94427.1| inner membrane lipoprotein yiaD [Shigella boydii 3594-74]
          Length = 219

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|254693909|ref|ZP_05155737.1| Bacterial outer membrane protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214200|ref|ZP_05928481.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915807|gb|EEX82668.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 216

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 86  LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 144

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +  +++      
Sbjct: 145 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 200

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 201 AQNRRVEIQISPLRG 215


>gi|238894412|ref|YP_002919146.1| putative outer membrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238546728|dbj|BAH63079.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 568

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            +I   +  +FD    +  P  T  ++  + ++ A    +I + GHTD+       + N 
Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA S    +  +G   D    + G+   R    +D     + NRR++I +  +
Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543


>gi|293412987|ref|ZP_06655655.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468634|gb|EFF11127.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 219

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDAGRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|289675211|ref|ZP_06496101.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
 gi|330896025|gb|EGH28248.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936859|gb|EGH41006.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975430|gb|EGH75496.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 260

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        +        ++ +        +      D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDDDVQKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRIELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   RI  +  G  +     +S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248


>gi|330950708|gb|EGH50968.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 260

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        +        ++ +        +     +D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDEDVQKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRIELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +     +S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248


>gi|309796906|ref|ZP_07691307.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|308119434|gb|EFO56696.1| OmpA family protein [Escherichia coli MS 145-7]
          Length = 550

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|290509857|ref|ZP_06549228.1| outer membrane protein [Klebsiella sp. 1_1_55]
 gi|289779251|gb|EFD87248.1| outer membrane protein [Klebsiella sp. 1_1_55]
          Length = 568

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            +I   +  +FD    +  P  T  ++  + ++ A    +I + GHTD+       + N 
Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA S    +  +G   D    + G+   R    +D     + NRR++I +  +
Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543


>gi|466690|gb|AAB18529.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
          Length = 219

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL    +  +++
Sbjct: 90  DKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNV 148

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            G+TD++   ++   N RLS  RA S    L+  GV   RI +  G        ++    
Sbjct: 149 IGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPIASNSTAE 204

Query: 329 --SANRRIDILV 338
             + NRR++I +
Sbjct: 205 GKAQNRRVEITL 216


>gi|157149164|ref|YP_001456483.1| putative outer membrane lipoprotein [Citrobacter koseri ATCC
           BAA-895]
 gi|157086369|gb|ABV16047.1| hypothetical protein CKO_05004 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N RLS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 NKTAVNVVGYTDST---GGQDLNMRLSQQRADSVASALITQGVAANRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|312885261|ref|ZP_07744938.1| outer membrane protein A precursor [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367068|gb|EFP94643.1| outer membrane protein A precursor [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 323

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 228 IIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
           I D +      F+  S+   PE+   L  I EVL      V+ + G+TD        + N
Sbjct: 203 IFDAKVMGAGNFEFDSAKLKPESANELDSIVEVLEDYPQSVVEVSGYTDT---SGPEKYN 259

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            +LS  RA +   VL+  G+ E RI+ I G        +++ +     NRR++I
Sbjct: 260 QKLSEQRAQAVKAVLIAKGIDESRITAI-GKGEANPIASNETLEGRKQNRRVEI 312


>gi|78223923|ref|YP_385670.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78195178|gb|ABB32945.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 398

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  S++  P +   L  I  +L       I I G+TD        + N +LS DR
Sbjct: 291 DRLQFETGSAVLKPSSQEQLGNIAAILKAFPQVAIKIGGYTDNV---GDPQANLKLSRDR 347

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           A +  Q L+K G+   R+    G+         A++     NRRID+ V  +
Sbjct: 348 ASNTMQELVKLGIDPSRLES-EGYGEEHPVADNATEEGRQQNRRIDVRVTKK 398


>gi|163740474|ref|ZP_02147868.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161386332|gb|EDQ10707.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 216

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                  +  S+    +L            + D ++ +       +   +   I      
Sbjct: 19  TDPATIGTPGSKTQNGALIGGLIGAGVGAAANDSDRGLGAVTGALVGAAAGSVI-----G 73

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L    +++  ++S         G+    T   +++S+    N   F   S+   P   
Sbjct: 74  NQLDAQERELRQSISN-------DGISIVNTGDRLIVSL---PNDLTFATDSAAVSPAVR 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+   L       + + GHTD+      A  N  LS  RA +    +   GV  +R
Sbjct: 124 SDLNKVASSLVRYPNSQVQVIGHTDSD---GDAGYNQGLSERRANAVADQIQAGGVPYNR 180

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           + +I G    +   ++      + NRR++I+V  +
Sbjct: 181 V-QIIGRGESQPVASNLTAEGKARNRRVEIVVIPQ 214


>gi|237703321|ref|ZP_04533802.1| OmpA family protein [Escherichia sp. 3_2_53FAA]
 gi|226902585|gb|EEH88844.1| OmpA family protein [Escherichia sp. 3_2_53FAA]
 gi|315285303|gb|EFU44748.1| OmpA family protein [Escherichia coli MS 110-3]
 gi|323954903|gb|EGB50683.1| OmpA family protein [Escherichia coli H263]
          Length = 219

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|288958638|ref|YP_003448979.1| ompA-family protein [Azospirillum sp. B510]
 gi|288910946|dbj|BAI72435.1| ompA-family protein [Azospirillum sp. B510]
          Length = 502

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295
           F   S    P  + + + + E L      IS+ G+TD+   R+     N  LS  RA+  
Sbjct: 391 FASGSDRIEPRYVELFRHVAEALRPEQGRISVIGNTDSVAIRSTRYRSNQELSEARAFRV 450

Query: 296 YQVLM-----KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +++       +G          G         +       ANRR+DI++  
Sbjct: 451 QRLMTDILGKDAGRDGGSRLSAEGRGDGDPIAPNTTAEGRQANRRVDIVLVP 502


>gi|66044564|ref|YP_234405.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63255271|gb|AAY36367.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 260

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        +        ++ +        +     +D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDEDVQKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248


>gi|330014716|ref|ZP_08307964.1| OmpA family protein [Klebsiella sp. MS 92-3]
 gi|328532776|gb|EGF59559.1| OmpA family protein [Klebsiella sp. MS 92-3]
          Length = 568

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETI 249
           R + +   +   + G V        +       I +      +  +FD    +  P  T 
Sbjct: 398 RGEQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTK 452

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            ++  + ++ A    +I + GHTD+       + N  LSL RA S    +  +G   D  
Sbjct: 453 RLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSC 509

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             + G+   R    +D     + NRR++I +  +
Sbjct: 510 FAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543


>gi|317046265|ref|YP_004113913.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b]
 gi|316947882|gb|ADU67357.1| OmpA/MotB domain protein [Pantoea sp. At-9b]
          Length = 220

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSSSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R +   N RLS  RA S    L+  GV  +R+ +  G       
Sbjct: 142 PKTAVNVTGYTDSTGTRAL---NMRLSQQRAESVASALIVQGVEANRL-RTQGLGPDNPV 197

Query: 322 IASDPMN--SANRRIDILVED 340
            ++      + NRR++I +  
Sbjct: 198 ASNSTEAGKAQNRRVEITLTP 218


>gi|332704092|ref|ZP_08424180.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332554241|gb|EGJ51285.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 253

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           +          Q++  +              S      +   S    D+ K   +  S+ 
Sbjct: 6   DETPPVPPRRTQEEAPEEGAPGWMTTFADMMSLLLCFFILLLSFSSMDVAKYEKVLGSLK 65

Query: 169 KEENYFLPPLSKEKILAMKRKKRL-QDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
                   P   E        + L ++L+      L  ++    +     +     ++ S
Sbjct: 66  YAFGVQRTPSDSEFASPPGVSQELSENLSADQKDILGLVLVLRKLVHQDVDVKDLAVVSS 125

Query: 228 -----IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281
                ++  +   MFD  S+   PE + ++ K   +L      + IRGHTD+    +   
Sbjct: 126 DRNGALLRVQAGAMFDPGSAALKPEAVKIIDKAVTILKERNFSVVIRGHTDSHIVHSAQF 185

Query: 282 RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             NW LS  RA ++ +++++ G +  +RI  I G+A  R  + +  +   + NRR++
Sbjct: 186 PSNWELSAARAAASARLVIERGAIDTNRIKAI-GYADSRPLVPNSTEENRAFNRRVE 241


>gi|50956547|gb|AAT90794.1| conserved hypothetical protein [uncultured proteobacterium QS1]
          Length = 511

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV--LQKI 255
           I  TL   +   + +G +       G  + I        F    +    E      ++++
Sbjct: 344 IMETLPQPLPKILSEGWLEVRADPRG-WLLIFTSDGA--FATGQARLSEEFKKKRNIERL 400

Query: 256 GEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS- 313
           GE LA     + + GHTD  P+RN  +  N +LS  RA +    + +S  S      ++ 
Sbjct: 401 GEALAPWPGDLEVIGHTDNKPYRNSPSNSNLKLSEGRAQTVADKMRESMQSSKYQRSVTS 460

Query: 314 -GFAHHRLKIASDPM--NSANRRIDIL--VEDRQG 343
            G         +D     S NRR+DIL  + +R+ 
Sbjct: 461 VGKGDTEPLDTNDTEQGRSRNRRVDILWKIGEREA 495


>gi|330807883|ref|YP_004352345.1| hypothetical protein PSEBR_a1163 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375991|gb|AEA67341.1| Conserved hypothetical protein; putative outer membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 231

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+ + +   P    VL  +   L   T    + + GHTD+         N RLS  RA S
Sbjct: 127 FEFNKATLTPADKDVLSGVATRLKQETSTTQLRVTGHTDSV---GSDAYNQRLSEKRANS 183

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             Q L+ +GV       +SG    +    +      + NRR +I +
Sbjct: 184 VVQYLVDNGVPRASFVSVSGAGESQPVADNKTADGRAMNRRTEIKI 229


>gi|253568033|ref|ZP_04845444.1| outer membrane protein [Bacteroides sp. 1_1_6]
 gi|298387668|ref|ZP_06997219.1| lipoprotein PG3 [Bacteroides sp. 1_1_14]
 gi|251842106|gb|EES70186.1| outer membrane protein [Bacteroides sp. 1_1_6]
 gi|298259524|gb|EFI02397.1| lipoprotein PG3 [Bacteroides sp. 1_1_14]
          Length = 260

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 88  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 136

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   +RN   +     N  LS +R
Sbjct: 137 TGNATLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 196

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 197 AQSVASYLLNCGVSSNQIKGVQGMGESDPIASNDTAAGREQNRRVEV 243


>gi|225024496|ref|ZP_03713688.1| hypothetical protein EIKCOROL_01371 [Eikenella corrodens ATCC
           23834]
 gi|224942771|gb|EEG23980.1| hypothetical protein EIKCOROL_01371 [Eikenella corrodens ATCC
           23834]
          Length = 217

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 237 FDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+SS     P     L ++   L +      I++ GHTD   +      N  LS  RA 
Sbjct: 102 FDRSSEQDLQPRGREELTELAAQLRNFEQLNSITVIGHTD---YLGSDAYNQNLSQQRAE 158

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILVE 339
           +  + L   G+  D+I  + G    +     D              NRR++I V+
Sbjct: 159 TVRRYLAAQGLPADKIRAV-GMGESQPVKQCDNHGGRSQLIACLQPNRRVEIQVD 212


>gi|206579667|ref|YP_002238891.1| OmpA domain protein [Klebsiella pneumoniae 342]
 gi|206568725|gb|ACI10501.1| OmpA domain protein [Klebsiella pneumoniae 342]
          Length = 567

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            +I   +  +FD    +  P  T  ++  + ++ A    +I + GHTD+       + N 
Sbjct: 428 DVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 484

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA S    +  +G   D    + G+   R    +D     + NRR++I +  +
Sbjct: 485 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 542


>gi|313200172|ref|YP_004038830.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312439488|gb|ADQ83594.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 170

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F  T  G  +S  D     +FD + ++    +   +QK+ + L       + I G
Sbjct: 45  LKEQGFVHTDDGWALSFAD---KLLFDTNQAVLNDRSRGAVQKVSKALQSVGLNKMRIEG 101

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           H DA+        N  LS  RA++     ++SG+ +  I  + G        ++      
Sbjct: 102 HADAT---GRESYNVELSEQRAWAVADAFIQSGMPKSGII-VRGMGSQSPVASNATVAGR 157

Query: 329 SANRRIDILVED 340
           + NRR+ I+V  
Sbjct: 158 AENRRVSIIVVT 169


>gi|323435973|ref|ZP_01049351.2| OmpA family protein [Dokdonia donghaensis MED134]
 gi|321496288|gb|EAQ39323.2| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 547

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 211 IVKGVLFETTR-------TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
            VK ++ E T           +I I    +  +FD  S+     + + L  +   L  + 
Sbjct: 412 FVKNLILEATPAPIVKTTEKTIIKI----DNILFDLDSAKIKEISTITLNTVVATLKANP 467

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           E  I+I  HTDA      A  N RLS+ RA SA + L+  G+S+DR+S   GF   +L I
Sbjct: 468 ELKIAINAHTDAQ---GSASYNKRLSMRRAASAMEYLLSKGISKDRLSS-QGFGEEQLLI 523

Query: 323 A----SDPMNSANRRIDILVEDRQ 342
                +   N  NRRI+ +V  ++
Sbjct: 524 NCTSCTPQENELNRRIEFVVISKE 547


>gi|325923680|ref|ZP_08185304.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
 gi|325545846|gb|EGD17076.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
          Length = 407

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+   +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 298 FDFNKSTLRPDAQSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 354

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 355 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 407


>gi|254303029|ref|ZP_04970387.1| OmpA family membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323221|gb|EDK88471.1| OmpA family membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 386

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
            + S            Q       ++   N   +     + +  ++    +  + D   +
Sbjct: 158 AQGSGQYLDDKNKVSFQIAADGTGVYKDENDDVTITIAENSSTYTKGNITVKNNDDGSGT 217

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
            N ++   L     +    +  K++  ++  K            +V  V        +LI
Sbjct: 218 YNDKDKDLLIENDGKGKAIITLKEKSTEVEAKPLEKPEKFPKLKMVPPV-PSIEANSLLI 276

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNW 285
           ++    +  +FD       PE    L  +  VL  +      I GHTD+         N 
Sbjct: 277 TL---DSGILFDVDKYDVRPEAERALASLATVLKEADVKAFEIDGHTDSDA---SDEYNQ 330

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            LS  RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 331 ALSEKRANAVKDFLASQGLTSE--ITIIGYGESRPVASNDTPEGKQKNRRVEIII 383


>gi|148559799|ref|YP_001259124.1| OmpA family protein [Brucella ovis ATCC 25840]
 gi|148371056|gb|ABQ61035.1| OmpA family protein [Brucella ovis ATCC 25840]
          Length = 243

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 227

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 228 AQNRRVEIQISPLRG 242


>gi|150398661|ref|YP_001329128.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030176|gb|ABR62293.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 221

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   F       +P     L  +  VL   ++  I + G
Sbjct: 91  LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFSKTLIDVDG 149

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD++     A  N  LS  RA S    L   GV + R+S + G+   R   ++      
Sbjct: 150 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGMERPVASNASEIGR 205

Query: 329 SANRRIDILVED-RQG 343
             NRR++I +   +QG
Sbjct: 206 VQNRRVEISIAPIKQG 221


>gi|237800117|ref|ZP_04588578.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022973|gb|EGI03030.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 260

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E        ++ +    +   +     +D  K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLDKADKAFRDSEDAQKVDQLAY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLDARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLASFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248


>gi|291615624|ref|YP_003518366.1| YiaD [Pantoea ananatis LMG 20103]
 gi|291150654|gb|ADD75238.1| YiaD [Pantoea ananatis LMG 20103]
          Length = 237

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 100 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSSLKPAGANTLTGVAMVLKEY 158

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRL 320
            +  +++ GHTD++  R +   N RLS  RA S    L+  GV+ +R+  + +G      
Sbjct: 159 PKTAVNVVGHTDSTGSRAL---NMRLSQQRAESVASALIVQGVAGNRLHTQGAGPDSPVA 215

Query: 321 KIASDPMNSANRRIDILV 338
             +++   + NRR++I +
Sbjct: 216 TNSTEAGKAQNRRVEITL 233


>gi|224367491|ref|YP_002601654.1| OmpA1 [Desulfobacterium autotrophicum HRM2]
 gi|223690207|gb|ACN13490.1| OmpA1 [Desulfobacterium autotrophicum HRM2]
          Length = 374

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 123/336 (36%), Gaps = 46/336 (13%)

Query: 39  DFMTVLMAFFLVMWIINATDDD--------TKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90
           D+++ L  F +++   ++ DD         T + I ++ +     L   + G+    + P
Sbjct: 42  DYVSALDNFLIILDASSSMDDRYNGNKKFVTAREIVKHLSQTLPEL-GQNAGLRSFGHSP 100

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
           + S +  +     E  T+  ++ K G  ++      +   +       ++   K ++   
Sbjct: 101 KVSDKLTVLFYGMEEYTQKGLNEKSGLVSRAGGTSPMHTALTAAREDLKTFSGKTAVVII 160

Query: 151 SEKGKDLC-------KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-----K 198
           S+  + +        ++    K+   E+  F P    +    M   + + ++ K     K
Sbjct: 161 SDGQEAMGLKLPITLEAAQALKNQMGEDLCFYPIFVGDDEKGMHLMEEIANIGKCGFVTK 220

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILIS------IIDQR---------NTPMFDKSSSI 243
               ++G      V+ V         ++       I+                FD   SI
Sbjct: 221 ADKLMTGSGMGQFVQDVFLTKKP---MVQAPAPTPIVATPPAVEKAWVVGEAYFDFDKSI 277

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P     L K+ +VL       + I+GHTD+        ++  LSL RA +    L+  
Sbjct: 278 IKPAGFEFLDKVVDVLKSRPALFVKIQGHTDS--IGTRKYND-ALSLRRAKAVKTYLINK 334

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           G+ ++R+    GFA  +   ++      + NRR+++
Sbjct: 335 GIDKNRL-SCEGFAFSKPVASNKTAEGRAMNRRVEL 369


>gi|161504616|ref|YP_001571728.1| hypothetical protein SARI_02730 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865963|gb|ABX22586.1| hypothetical protein SARI_02730 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 574

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S      T +++  +  + A    +I + GHTD +      + N  LSL RA 
Sbjct: 443 SLFDSGKSALKAGSTRMLVNSLVGIKAKPGWLIVVSGHTDNT---GNPKLNQTLSLKRAE 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 500 AVRNWMRDTGDVPESCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 549


>gi|78356732|ref|YP_388181.1| OmpA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219137|gb|ABB38486.1| OmpA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 352

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 20/280 (7%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
              + F         G + +    +     K D  I    T     L +         + 
Sbjct: 80  ASMHMFAPYEEVVPYGPYSKSGFEQGIMSLKADKEIFARRTPMGDGLNMLRPAADNMARN 139

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDL-------CKSTDLEKSINKEENYFLPPLS 179
               I     S              E    L        ++   +  +++        ++
Sbjct: 140 AAVIIVSDGESNFGSDPVAQAQALYESAPGLCLHVVSVAETEAGKAVLDRIAALKGCSVT 199

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            +    +  ++ L    K +      +        V+   T   I++  +       F  
Sbjct: 200 ADAATLLADEQALNGFVKDVFYDTREVKKAPAPAPVVTPETEEVIVLRSVQ------FAF 253

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            S+    E   VL +   ++       +++ GHTD++        N +LS  RA S    
Sbjct: 254 DSAEISNEAEDVLTEAATLIEEHAGKQVTLAGHTDST---GPEAYNQKLSQRRAESVKAF 310

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           L K GV  +RI  + GF     K  ++       NRR++I
Sbjct: 311 LAKEGVDANRIKAV-GFGESEPKFDNNTAEGRKLNRRVEI 349


>gi|21241777|ref|NP_641359.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|294627877|ref|ZP_06706456.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666871|ref|ZP_06732103.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|21107151|gb|AAM35895.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292597791|gb|EFF41949.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603388|gb|EFF46807.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 365

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365


>gi|91213065|ref|YP_543051.1| putative outer membrane lipoprotein [Escherichia coli UTI89]
 gi|117625836|ref|YP_859159.1| putative outer membrane lipoprotein [Escherichia coli APEC O1]
 gi|218560629|ref|YP_002393542.1| outer membrane lipoprotein [Escherichia coli S88]
 gi|306816094|ref|ZP_07450232.1| putative outer membrane lipoprotein [Escherichia coli NC101]
 gi|331649382|ref|ZP_08350468.1| inner membrane lipoprotein YiaD [Escherichia coli M605]
 gi|91074639|gb|ABE09520.1| putative outer membrane protein [Escherichia coli UTI89]
 gi|115514960|gb|ABJ03035.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218367398|emb|CAR05180.1| putative outer membrane lipoprotien [Escherichia coli S88]
 gi|281180597|dbj|BAI56927.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|294489870|gb|ADE88626.1| OmpA family protein [Escherichia coli IHE3034]
 gi|305850490|gb|EFM50947.1| putative outer membrane lipoprotein [Escherichia coli NC101]
 gi|307628634|gb|ADN72938.1| putative outer membrane lipoprotein [Escherichia coli UM146]
 gi|323949796|gb|EGB45680.1| OmpA family protein [Escherichia coli H252]
 gi|330909615|gb|EGH38129.1| outer membrane protein A precursor [Escherichia coli AA86]
 gi|331041880|gb|EGI14024.1| inner membrane lipoprotein YiaD [Escherichia coli M605]
          Length = 219

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|163737113|ref|ZP_02144531.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|161389717|gb|EDQ14068.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 219

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                  +  S+    +L            + D ++ +       +   +   I      
Sbjct: 22  TDPATIGTPGSKTQNGALIGGLIGAGVGAAANDSDRGLGAVTGALVGAAAGSVI-----G 76

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L    +++  ++S         G+    T   +++S+    N   F   S+   P   
Sbjct: 77  NQLDAQERELRQSISN-------DGISIVNTGDRLIVSL---PNDLTFATDSAAVSPAVR 126

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+   L       + + GHTD+      A  N  LS  RA +    +   GV  +R
Sbjct: 127 SDLNKVASSLVRYPNSQVQVIGHTDSD---GDAGYNQGLSERRANAVADQIQAGGVPYNR 183

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           + +I G    +   ++      + NRR++I+V  +
Sbjct: 184 V-QIIGRGESQPVASNLTAEGKARNRRVEIVVIPQ 217


>gi|163782256|ref|ZP_02177254.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882289|gb|EDP75795.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 313

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S++  P +   L++I   L  + +  + + GHTD +        N +LSL RA + 
Sbjct: 211 FDHGSAVIKPGSEKTLKEIARYLKMNPKARLYVVGHTDGT---GSYDYNLKLSLKRAEAV 267

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + L+K  G+S  R+  + G         +      + NRR++++
Sbjct: 268 VRRLVKEYGISPKRLKAV-GVGPVAPVDTNRTPEGRARNRRVELV 311


>gi|332185595|ref|ZP_08387343.1| rickettsia 17 kDa surface antigen family protein [Sphingomonas sp.
           S17]
 gi|332014573|gb|EGI56630.1| rickettsia 17 kDa surface antigen family protein [Sphingomonas sp.
           S17]
          Length = 225

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L ++ ++L+      I + GHTD++        N  LS  RA + 
Sbjct: 116 FAYDSSTVQPQFRQTLDQVADILSQYKQTYIDVYGHTDST---GSDSYNQALSERRAVAV 172

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED-RQG 343
              L   GV   RI    GF   +   ++D     +ANRR++I +   R+G
Sbjct: 173 ADYLASRGVQPARIG-TRGFGKSQPIASNDTDAGRAANRRVEIKIVPIREG 222


>gi|145299366|ref|YP_001142207.1| OmpA family protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852138|gb|ABO90459.1| OmpA family protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 162

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 12/146 (8%)

Query: 200 SSTLSGLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            S   GL+A+ I  +K   F  T  G  +   D  N  +F   S    P+T V+++K+G 
Sbjct: 23  QSAPRGLMAEQIGVLKEQGFRLTDEGWTL---DFSNRVLFANDSEALNPDTRVLVEKLGM 79

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L         I GHTD++        N +LSL RA S   VL+  G+    +  I G  
Sbjct: 80  TLLGVGLNKARIDGHTDSN---GPEAYNDQLSLKRAKSVADVLVPVGMQPANLD-IRGRG 135

Query: 317 HHRLK--IASDPMNSANRRIDILVED 340
                    +    + NRR+ I++ +
Sbjct: 136 ERDPVADNKTAAGRAENRRVGIIISN 161


>gi|240145494|ref|ZP_04744095.1| putative chemotaxis protein MotB [Roseburia intestinalis L1-82]
 gi|257202309|gb|EEV00594.1| putative chemotaxis protein MotB [Roseburia intestinalis L1-82]
          Length = 267

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 8/178 (4%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILI 226
           +K  +       +E  +  + K++  + ++K+S  L   +A   I   V  +     +++
Sbjct: 86  DKANSETDQETDEENDVVEEYKEQALEESEKMSEQLEDAIARYGIQDQVEVDFNAQYVML 145

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR-DN 284
           ++       +FD   +    E   ++ K+G+++      +I + GHTD  P  +    DN
Sbjct: 146 NM---NGALLFDSGHAEIRSEAYPLIDKLGKLIEPYQDNIIEVEGHTDNVPIHSAKYEDN 202

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L      E    K SG   +     +      S NRR+ I + +
Sbjct: 203 DVLSFYRARAVTDYLRDITTVEPAHLKASGRGEYVPVADNTTQEGRSRNRRVIIKIYN 260


>gi|78046598|ref|YP_362773.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925345|ref|ZP_08186747.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
 gi|78035028|emb|CAJ22673.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544223|gb|EGD15604.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
          Length = 365

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365


>gi|329902399|ref|ZP_08273103.1| Outer membrane lipoprotein omp16 precursor [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548814|gb|EGF33448.1| Outer membrane lipoprotein omp16 precursor [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 224

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 16/155 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R+++  + +     G          + +T    + ++I    +   FD + S   P+   
Sbjct: 82  RMENQKQAMEQATRGTGVQ------VTQTADNRLKLAI---PSDISFDTNRSDIKPDFRP 132

Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL + G  L   ++ V++I GHTD +    I      LS+DRA      L+  GV+  R 
Sbjct: 133 VLDRFGNSLNDNASTVVTIIGHTDNTGSAAINDP---LSVDRAGRTRDYLISRGVAPYRF 189

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           + I G   +    +++     + NRR++I V +RQ
Sbjct: 190 T-IEGRGENDPIASNNDSTGRARNRRVEIFVAERQ 223


>gi|317151982|ref|YP_004120030.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942233|gb|ADU61284.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 273

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            +L  L  +NI   + F + R    + I+    + +F   +         VL     V A
Sbjct: 86  ESLKALKWENIDDDINFRSNRF---VQILSIDASLLFGPDAVTLSESGQAVLDGYMPVFA 142

Query: 261 HSTEVISIRGHT---------DASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRI 309
                + + GHT         D  P  +    +  W++SL RA + Y+ L+  G+    +
Sbjct: 143 QVQYPLLLAGHTSQLRDELGADYKPGDDEENPDLSWKISLSRALAVYRHLIDRGMRPG-M 201

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            ++ GF  +            + NRR+DI+++ R
Sbjct: 202 LRVEGFGKYMPFYTQTTVESRARNRRVDIVLDKR 235



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKN 75
           + KK         +  W I ++D MT+++ FF+++  ++  D      A+      FG  
Sbjct: 1   MAKKGKKHICEE-MPPWMITFSDVMTLMLTFFVLLVSMSHIDPRRKLVALGSIIGTFGWE 59

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHI 106
              AS  +F +++         ID    E +
Sbjct: 60  --DASYEVFSKKDTRRTVEPGPIDSGDLESL 88


>gi|23502081|ref|NP_698208.1| OmpA family protein [Brucella suis 1330]
 gi|161619159|ref|YP_001593046.1| OmpA/MotB domain-containing protein [Brucella canis ATCC 23365]
 gi|163843469|ref|YP_001627873.1| OmpA/MotB domain-containing protein [Brucella suis ATCC 23445]
 gi|225852700|ref|YP_002732933.1| OmpA/MotB domain-containing protein [Brucella melitensis ATCC
           23457]
 gi|254701944|ref|ZP_05163772.1| OmpA family protein [Brucella suis bv. 5 str. 513]
 gi|254704489|ref|ZP_05166317.1| OmpA family protein [Brucella suis bv. 3 str. 686]
 gi|254706615|ref|ZP_05168443.1| OmpA family protein [Brucella pinnipedialis M163/99/10]
 gi|254710275|ref|ZP_05172086.1| OmpA family protein [Brucella pinnipedialis B2/94]
 gi|254714272|ref|ZP_05176083.1| OmpA family protein [Brucella ceti M644/93/1]
 gi|254717709|ref|ZP_05179520.1| OmpA family protein [Brucella ceti M13/05/1]
 gi|256031769|ref|ZP_05445383.1| OmpA family protein [Brucella pinnipedialis M292/94/1]
 gi|256044854|ref|ZP_05447758.1| OmpA family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061284|ref|ZP_05451434.1| OmpA family protein [Brucella neotomae 5K33]
 gi|256113758|ref|ZP_05454562.1| OmpA family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256159939|ref|ZP_05457657.1| OmpA family protein [Brucella ceti M490/95/1]
 gi|256255170|ref|ZP_05460706.1| OmpA family protein [Brucella ceti B1/94]
 gi|256369628|ref|YP_003107138.1| OmpA family protein [Brucella microti CCM 4915]
 gi|260168903|ref|ZP_05755714.1| OmpA family protein [Brucella sp. F5/99]
 gi|260565544|ref|ZP_05836028.1| bacterial outer membrane protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260566267|ref|ZP_05836737.1| bacterial outer membrane protein [Brucella suis bv. 4 str. 40]
 gi|261219551|ref|ZP_05933832.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261314075|ref|ZP_05953272.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317837|ref|ZP_05957034.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261322046|ref|ZP_05961243.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261752512|ref|ZP_05996221.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261755171|ref|ZP_05998880.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|261758395|ref|ZP_06002104.1| bacterial outer membrane protein [Brucella sp. F5/99]
 gi|306840330|ref|ZP_07473102.1| OmpA family protein [Brucella sp. BO2]
 gi|306844105|ref|ZP_07476699.1| OmpA family protein [Brucella sp. BO1]
 gi|23348039|gb|AAN30123.1| OmpA family protein [Brucella suis 1330]
 gi|161335970|gb|ABX62275.1| OmpA/MotB domain protein [Brucella canis ATCC 23365]
 gi|163674192|gb|ABY38303.1| OmpA/MotB domain protein [Brucella suis ATCC 23445]
 gi|225641065|gb|ACO00979.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457]
 gi|255999790|gb|ACU48189.1| OmpA family protein [Brucella microti CCM 4915]
 gi|260151612|gb|EEW86706.1| bacterial outer membrane protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155785|gb|EEW90865.1| bacterial outer membrane protein [Brucella suis bv. 4 str. 40]
 gi|260924640|gb|EEX91208.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1]
 gi|261294736|gb|EEX98232.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1]
 gi|261297060|gb|EEY00557.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261303101|gb|EEY06598.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261738379|gb|EEY26375.1| bacterial outer membrane protein [Brucella sp. F5/99]
 gi|261742265|gb|EEY30191.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261744924|gb|EEY32850.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|306275548|gb|EFM57280.1| OmpA family protein [Brucella sp. BO1]
 gi|306289729|gb|EFM60918.1| OmpA family protein [Brucella sp. BO2]
          Length = 220

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 90  LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 204

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 205 AQNRRVEIQISPLRG 219


>gi|298372336|ref|ZP_06982326.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275240|gb|EFI16791.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 705

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S     +  VL  + +++ ++    + I GHTD+         N  LS  RA + 
Sbjct: 595 FDTGKSTIKSVSYGVLNMVVDIMKNNPDYNLVIAGHTDSQ---GNDDFNMTLSDKRAAAV 651

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            Q L+  GV + R+  I G+   +    +      + NRR++  V
Sbjct: 652 RQYLIDKGVEDARLQSI-GYGETKPVATNKTAKGRAQNRRVEFTV 695


>gi|288935830|ref|YP_003439889.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|288890539|gb|ADC58857.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
          Length = 568

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            +I   +  +FD    +  P  T  ++  + ++ A    +I + GHTD+       + N 
Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA S    +  +G   D    + G+   R    +D     + NRR++I +  +
Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543


>gi|71734248|ref|YP_276006.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487118|ref|ZP_05641159.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626062|ref|ZP_06459016.1| ompA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646239|ref|ZP_06477582.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488307|ref|ZP_07006339.1| Outer membrane lipoprotein omp16 precursor [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554801|gb|AAZ34012.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157129|gb|EFH98217.1| Outer membrane lipoprotein omp16 precursor [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323146|gb|EFW79235.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329582|gb|EFW85571.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867556|gb|EGH02265.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330878322|gb|EGH12471.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330892526|gb|EGH25187.1| ompA family protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330985082|gb|EGH83185.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009256|gb|EGH89312.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 260

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E        ++ +        +      D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248


>gi|152966787|ref|YP_001362571.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
 gi|151361304|gb|ABS04307.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
          Length = 471

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVI 266
           A+++   V  ET+  G  +++       +F   S+   PE   VL+    +VL      +
Sbjct: 256 AEDLQGTVRTETSDAGARVALAAD---VLFALDSAELSPEARAVLETAATDVLTRRPGPV 312

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324
           ++ GHTD          N  LS  RA +   VL    +  D   ++ G       +   S
Sbjct: 313 AVVGHTDDQ---GADDYNLDLSRRRAQAVADVL-GPLLGADYPLQVDGRGEAEPAVPGPS 368

Query: 325 DPMNSANRRIDILV 338
               + NRR++++V
Sbjct: 369 TEARARNRRVELVV 382


>gi|29346604|ref|NP_810107.1| OmpA family outer membrane protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338500|gb|AAO76301.1| outer membrane protein, OmpA family [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 266

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 94  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 142

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   +RN   +     N  LS +R
Sbjct: 143 TGNATLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 202

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 203 AQSVASYLLNCGVSSNQIKGVQGMGESDPIASNDTAAGREQNRRVEV 249


>gi|313497484|gb|ADR58850.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 239

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I++ D     MF   S+   P     LQ +   L   T   + + GHTD+         
Sbjct: 127 VITL-DDNGAVMFAFDSAELTPAAQQRLQGLVAKLNSPTVAKVRVIGHTDSV---GSDSY 182

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           N  LS  RA S  + L+  G+   +++   G         ++     + NRR+++ +
Sbjct: 183 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238


>gi|222035267|emb|CAP78012.1| Inner membrane lipoprotein yiad [Escherichia coli LF82]
 gi|312948118|gb|ADR28945.1| putative outer membrane lipoprotein [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320193935|gb|EFW68568.1| Outer membrane protein A precursor [Escherichia coli WV_060327]
          Length = 219

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTSEGKAQNRRVEITL 216


>gi|218887301|ref|YP_002436622.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758255|gb|ACL09154.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 311

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 43/242 (17%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S   + +L+R      +  +          E    L PL          ++ +++L  
Sbjct: 67  SMSSMNRVTLSRIGSHFGEAGEQALGVTGSVPERIRLLEPLLARPAQVFAHQREIKELLF 126

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
             +    G+    + K +       G+++++ D     +F          +  +L  + E
Sbjct: 127 PGAELPPGIDRSTLDKNLRILEHPEGVVLALTDD---LLFAPGQWQLREASRPLLGMLAE 183

Query: 258 VLAHSTEVISIRGHTDAS-----------------PFRNIARDNWRLSLDRAYSAYQVLM 300
           VL + T  ++I GH+D                            + L+  RA +  +  +
Sbjct: 184 VLEYVTADVAIAGHSDPRTEGVSALEQAAGAGGGAGVVTGDAIGYELAGRRALTVLEYFV 243

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNS----------------------ANRRIDILV 338
           +  +   R   ++G+   R  +A  P +                        NRR++ILV
Sbjct: 244 QRKLDPARF-SVAGYGPDRPSLAGQPPSPGAPGVPEASGEPDAAAGSSDPDRNRRVEILV 302

Query: 339 ED 340
           + 
Sbjct: 303 KT 304


>gi|109947291|ref|YP_664519.1| flagellar motor protein MotB [Helicobacter acinonychis str. Sheeba]
 gi|109714512|emb|CAJ99520.1| flagellar motor rotation protein MotB [Helicobacter acinonychis
           str. Sheeba]
          Length = 253

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLP 246
              ++ +S  S   + N    +       G ++  IDQ       +  +F+ + S     
Sbjct: 77  QEEEQTASESSKPASQNTESKITITRKGEGSVLEQIDQGSILKLPSNLLFENAVSDAINQ 136

Query: 247 ETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSG 303
           + ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ G
Sbjct: 137 DMMLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLMQYG 196

Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           V  D++   S +        +D       N R++I 
Sbjct: 197 VDPDQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + KI  T + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGQEEEQTASESSKPASQNTESKITITRKGEGS 107


>gi|119385600|ref|YP_916655.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119376195|gb|ABL70959.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 215

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +    G  +S++    + +F   S+    +    L  I   L       I I GHTD++
Sbjct: 92  IQIVNHGTHLSVV-MPESTLFATDSAAVGAQGQNDLYTIARNLTQYPNSRIQIVGHTDST 150

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                A  N  LS  RA S   +L   GV++ R++ + G    +   ++D     + NRR
Sbjct: 151 ---GSAAYNQDLSERRARSVAGILTAGGVAQSRVTTL-GRGATQPVASNDTAAGRAQNRR 206

Query: 334 IDILVED 340
           ++IL+  
Sbjct: 207 VEILITP 213


>gi|330504604|ref|YP_004381473.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328918890|gb|AEB59721.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 261

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 90/236 (38%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170
           S       +   +N   L +  QS       T+++++  +      ++K   K+      
Sbjct: 21  SHQPNANLESARSNFSSLQSDPQSSKVAALETKEAQEWLNKADKAYMDKEDEKKVDQLAY 80

Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +    +   L     +     A++  + L    A    + + +  + T  G L++
Sbjct: 81  LTNQRVEVAKQTIALRTAEAELKNSSAQRAQALLDARDAQIRKLQESLNAKQTERGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +FD + +      +  + ++   L  + E  + + G+TD+      A  N  
Sbjct: 141 FGD----VLFDFNKADLKSSALPNITQLARFLQENPERQVIVEGYTDSV---GSASYNQG 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           LS  RA S  + L+++GV   RI    G+         +SD   + NRR+++ + +
Sbjct: 194 LSERRAESVRRALIRAGVEPTRIVA-QGYGKEYPVADNSSDSGRAQNRRVEVTISN 248


>gi|291276590|ref|YP_003516362.1| putative flagellar motor protein [Helicobacter mustelae 12198]
 gi|290963784|emb|CBG39619.1| putative flagellar motor protein [Helicobacter mustelae 12198]
          Length = 258

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 86/209 (41%), Gaps = 14/209 (6%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           S Q++    +L  +  K  D     +  + + +      P    ++    K ++     A
Sbjct: 38  SAQNKAKVEALKTEFIKIFDATPKPETIQPVTRI--PPNPGDVTDQEDGDKAQQSQDSNA 95

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKI 255
            K    +  L    I +G + E    GI + +    +  +FD  S+     E    L+ +
Sbjct: 96  VKTVENIVQL-EQIIQEGGVLEQIEHGITLQL---PSDLLFDNGSAELANDEMKDYLRNM 151

Query: 256 GEVLAHST--EVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             V+        I+++G+TD +P    +  ++++ L+  RA +   VL++ GV++ ++  
Sbjct: 152 ANVIKKFPPQVSINVKGYTDNAPLPPNSPYKNHYLLAAARAMAVMNVLIQQGVNQKQL-S 210

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338
            + +  +     ++     + N R++I +
Sbjct: 211 FTSYGKNSPIAPNNTPANRAKNNRVEIYL 239



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F      +
Sbjct: 1   MAKKAKKQECPA-GEKWAVPYADFLSLLLALFIALYAISAQNKAKVEALKTEF----IKI 55

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
             A+      Q P  R   N  D++  E   K        +    +   +LE  I     
Sbjct: 56  FDATPKPETIQ-PVTRIPPNPGDVTDQEDGDKAQQSQDSNAVKTVENIVQLEQIIQEGGV 114

Query: 137 SQQSEHC 143
            +Q EH 
Sbjct: 115 LEQIEHG 121


>gi|86138080|ref|ZP_01056655.1| hypothetical protein MED193_01095 [Roseobacter sp. MED193]
 gi|85825107|gb|EAQ45307.1| hypothetical protein MED193_01095 [Roseobacter sp. MED193]
          Length = 347

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              I+ Q  +  F   +S     +   L  + ++++     VI + GHTD    +  A  
Sbjct: 233 RFDILSQSRSVNFAPGTSRLDQRSTSFLDSLFDIISRCPAMVIEVGGHTDD---KGSAAA 289

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           N RLS  RA S  + L   G++ DR+  + G+      + ++     + NRRI   V +
Sbjct: 290 NTRLSQKRASSVVRYLSDKGIARDRLQSV-GYGESTPLVPNNSAQNRAKNRRIAFKVLN 347


>gi|209964212|ref|YP_002297127.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW]
 gi|7025367|gb|AAF35853.1|AF220007_1 polar flagellar motor protein MopB [Rhodospirillum centenum]
 gi|209957678|gb|ACI98314.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW]
          Length = 239

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            VL       +++++       +F    +   P  +  L  +G V  +    + + GHTD
Sbjct: 108 QVLITRRDGRLVLAL---PADLLFAPGDAALSPAGLRALFVLGGVAGNIGNALEVVGHTD 164

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-----HRLKIASDPMN 328
             P  +    NW LSL RA +    L  +G    R   + G A          +      
Sbjct: 165 PRPAGSRWPSNWELSLARAQAVADALHGAGYL--RAITVRGQADAQFPETAPFLPVAERM 222

Query: 329 SANRRIDILV 338
              RR+D++V
Sbjct: 223 RLARRVDVIV 232



 Score = 42.6 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 31/90 (34%)

Query: 30  LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89
             +W + + D + +++ FF++++ ++   D   +A+    +                 N 
Sbjct: 19  GRAWLVSFTDLVCLMLTFFVMLYAMSDPADPRYRALAGGLHGDLAVRAEGEAAPEAAFNV 78

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              + +  IDL     + +  +        
Sbjct: 79  DRLNREQAIDLGYLGRVFETQMAGHPELAQ 108


>gi|307312753|ref|ZP_07592383.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|306907188|gb|EFN37694.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|315062099|gb|ADT76426.1| Putative outer membrane protein/OmpA domain protein [Escherichia
           coli W]
 gi|323377319|gb|ADX49587.1| OmpA/MotB domain protein [Escherichia coli KO11]
          Length = 550

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDTL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|116623978|ref|YP_826134.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227140|gb|ABJ85849.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 388

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             +   FD  S+   P +   L  I  VL +     + I G+TD       A  N RLS 
Sbjct: 280 TMDQIAFDSGSATLKPASQTQLNNIATVLNNCPGVRLDIAGYTDNV---GSAESNLRLSR 336

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
           +RA S   VL+K GV  +R +   G+        +  +   + NRR+
Sbjct: 337 NRANSVVAVLVKEGVPRERFNA-EGYGEEDPVADNSIEQGRAQNRRV 382


>gi|294782159|ref|ZP_06747485.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480800|gb|EFG28575.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 212

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            + A+++ + L G  A+              +++++        F   S+         L
Sbjct: 74  DNQARELKAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             + + L    E  I + G+TD++        N  LS  RA S  Q L+  GVS +RI  
Sbjct: 124 NGVAQTLVRYPETRIQVNGYTDST---GGDAHNQELSQRRANSVAQYLISQGVSSNRIVA 180

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +GF       ++       ANRR+++ +   Q
Sbjct: 181 -NGFGSLNPIASNATPEGRQANRRVEVRILPAQ 212


>gi|225627675|ref|ZP_03785712.1| OmpA family protein [Brucella ceti str. Cudo]
 gi|225617680|gb|EEH14725.1| OmpA family protein [Brucella ceti str. Cudo]
          Length = 243

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 227

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 228 AQNRRVEIQISPLRG 242


>gi|21230404|ref|NP_636321.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769602|ref|YP_244364.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992813|ref|YP_001904823.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111963|gb|AAM40245.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574934|gb|AAY50344.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734573|emb|CAP52783.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           campestris]
          Length = 365

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ + +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 365


>gi|260883956|ref|ZP_05895570.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297248510|ref|ZP_06932228.1| outer membrane protein [Brucella abortus bv. 5 str. B3196]
 gi|260873484|gb|EEX80553.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|297175679|gb|EFH35026.1| outer membrane protein [Brucella abortus bv. 5 str. B3196]
          Length = 232

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +  +++      
Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 216

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 217 AQNRRVEIQISPLRG 231


>gi|254483376|ref|ZP_05096606.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
 gi|214036360|gb|EEB77037.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
          Length = 214

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH- 261
           +        ++G   +  R G  I +I       F+  S         VL  +G+VL+  
Sbjct: 76  VQEAKLKEELQGTGVQVVREGDNIRLI-MPGNITFETDSYNLRSSFYSVLNSVGQVLSKY 134

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           +   + + GHTD +      + N  LS  RA S    L    V   R+  + G    +  
Sbjct: 135 ADTTLRVSGHTDNT---GSRQYNQTLSERRAGSVADYLATREVDRARML-VQGMGFDQPI 190

Query: 322 IAS--DPMNSANRRIDILVEDRQ 342
             +      + NRR+++ +   Q
Sbjct: 191 ADNGSAAGRAQNRRVELYILPNQ 213


>gi|91787475|ref|YP_548427.1| OmpA/MotB [Polaromonas sp. JS666]
 gi|91696700|gb|ABE43529.1| OmpA/MotB [Polaromonas sp. JS666]
          Length = 227

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           +KK+    + +       GV    T     + + D  +   FD   +   P    +L + 
Sbjct: 81  SKKMQEQKAAMERATAGTGVAVSQTPDN-RLKL-DIPSDVSFDVGRAAIKPNFAPILNQF 138

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              L  +    ++I GHTD++    I      LS+DRA +A   L+  GV+  RI    G
Sbjct: 139 ATSLNQNQVTTVTIIGHTDSTGSDAINNP---LSVDRANAARDYLVSRGVARTRI-ATDG 194

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
                    ++       NRR++I V
Sbjct: 195 RGSREPVADNNTQQGRDKNRRVEIYV 220


>gi|13472147|ref|NP_103714.1| hypothetical protein mlr2348 [Mesorhizobium loti MAFF303099]
 gi|14022892|dbj|BAB49500.1| mlr2348 [Mesorhizobium loti MAFF303099]
          Length = 442

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF--RNIAR 282
           II   N  +F  S          ++Q I +V+         I+I GHTD       N   
Sbjct: 322 IIQSSNPELFQSSRPTLSQGYEPLIQSIAKVILANQELIGNITIVGHTDNVRLQRSNPLA 381

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            N RLS  RA +   +L+++GV ++RI    G A       +      + NRR+++LVE 
Sbjct: 382 SNQRLSEARAQTIADLLVQAGVPQERIHS-EGRADSDPVADNSTREGRALNRRVEVLVEK 440

Query: 341 R 341
           R
Sbjct: 441 R 441


>gi|163760609|ref|ZP_02167690.1| OmpA/MotB [Hoeflea phototrophica DFL-43]
 gi|162282224|gb|EDQ32514.1| OmpA/MotB [Hoeflea phototrophica DFL-43]
          Length = 588

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 22/224 (9%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
             +Q         + + +  +    + L   S   +D   S   E             L 
Sbjct: 384 DDRQRVAAGAPGGFETAALAALQALSRLDEASVVLRDGALSVRGEALSGNAAADLQRQLE 443

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            +   A   ++ +  L    S  LSG    N++  +L   T                FD 
Sbjct: 444 ADLPEAFAAQQSVA-LKPLPSEDLSGPSCQNVLNQLLAANTIR--------------FDT 488

Query: 240 SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             +     +   L +I           + I GHTDA         N  LS  RA +    
Sbjct: 489 GQAGIQHHSFGFLDRIAFAARQCRDVRLEISGHTDAD---GDEGANQTLSERRAEAVVAY 545

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           ++ +GV  DR+  I G+   R    +  D   +ANRRI+I V +
Sbjct: 546 MVAAGVGPDRVVAI-GYGESRPVADNETDTGKAANRRIEIRVVN 588


>gi|26987858|ref|NP_743283.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24982561|gb|AAN66747.1|AE016303_2 OmpA family protein [Pseudomonas putida KT2440]
          Length = 264

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I++ D     MF   S+   P     LQ + E L   T   + + GHTD+         
Sbjct: 152 VITL-DDNGAVMFAFDSAELTPAAQQRLQGLVEKLNSPTVAKVRVIGHTDSV---GSDSY 207

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           N  LS  RA S  + L+  G+   +++   G         ++     + NRR+++ +
Sbjct: 208 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 263


>gi|585710|sp|P37726|PORF_PSEFL RecName: Full=Outer membrane porin F; AltName: Full=Root adhesin;
           Flags: Precursor
 gi|5668610|gb|AAD45981.1| OprF [Pseudomonas fluorescens]
          Length = 326

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +A      + + GHTD+         N +LS  RA   
Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI---GPDAYNQKLSQRRADRV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+K GV+  RI+ + G+   R     A++   + NRR++  VE
Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322


>gi|332996326|gb|EGK15953.1| inner membrane lipoprotein yiaD [Shigella flexneri VA-6]
          Length = 219

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|300718501|ref|YP_003743304.1| OmpA family protein [Erwinia billingiae Eb661]
 gi|299064337|emb|CAX61457.1| OmpA family protein [Erwinia billingiae Eb661]
          Length = 500

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             R+K L  +A +    +S         G   +    GI+  + D     MFD  S+   
Sbjct: 78  QNREKALAKIAAEEHIVISSSPLQAQESGGKKDV---GIVAQVEDN---GMFDTDSAQLS 131

Query: 246 PETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            + +  ++K+  V+       V+ I GHTDA+   +    N +LS  RA S  +VL ++G
Sbjct: 132 VDGLRQVRKLAAVMKQDDQQGVVLIVGHTDATGNASW---NQKLSESRAQSVGRVLQQAG 188

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           ++  R+    G    R    +      SANRR++I+
Sbjct: 189 LNPQRLY-FQGAGSSRPIADNATLAGRSANRRVEIV 223


>gi|157736742|ref|YP_001489425.1| outer membrane fibronectin-binding protein [Arcobacter butzleri
           RM4018]
 gi|157698596|gb|ABV66756.1| outer membrane fibronectin-binding protein [Arcobacter butzleri
           RM4018]
          Length = 338

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+        + +  +V+    +   +I  HTD+         N +LS  RA SA
Sbjct: 236 FDTDKSVIKDSYNSRINEFAKVMKADPKLKANIEAHTDSV---GTDAYNQKLSERRATSA 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L+ +GV +DRI  + G+   R   ++D     + NRR++
Sbjct: 293 VNALVAAGVEKDRIKAV-GYGESRPIASNDTVEGRAENRRVE 333


>gi|258625264|ref|ZP_05720172.1| outer membrane protein OmpA [Vibrio mimicus VM603]
 gi|258582437|gb|EEW07278.1| outer membrane protein OmpA [Vibrio mimicus VM603]
          Length = 328

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  +  + +  + +V+ V    T T          ++  F  +S+   P     L K+ 
Sbjct: 185 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 238

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L    +  + + GHTD++        N +LS  RA +  + L   GV   RI+   G 
Sbjct: 239 GYLNQYPQAKVEVVGHTDSN---GSEAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 294

Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338
                  ++        NRR+++++
Sbjct: 295 DESNPIASNATAEGREKNRRVELVI 319


>gi|146309839|ref|YP_001174913.1| putative outer membrane lipoprotein [Enterobacter sp. 638]
 gi|145316715|gb|ABP58862.1| OmpA/MotB domain protein [Enterobacter sp. 638]
          Length = 220

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I I++  +   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMQGTGVSVTRNGDNI-ILNMPSNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           ++  +++ G+TD++        N RLS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 SKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASSLITQGVAANRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            +++     + NRR++I +   Q
Sbjct: 198 ASNNTAEGKAQNRRVEITLSPIQ 220


>gi|89055525|ref|YP_510976.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88865074|gb|ABD55951.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 487

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V   L    R G  + ++   N   F   S+    + I V  +IG+ LA     +++ GH
Sbjct: 332 VDDGLVRLYREGDAV-LVRVANAGAFGSGSAEIEDDFIDVFDRIGQALAAEDFAVTVLGH 390

Query: 272 TDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           TD    R     +N+ LS  RA +   VL++  V   R+  I G    R   ++      
Sbjct: 391 TDNVAIRTAPFPNNYFLSRARANAVRDVLLQY-VDPVRVD-IEGQGPDRPIASNITPAGQ 448

Query: 329 SANRRIDILVED 340
            ANRR +ILV +
Sbjct: 449 EANRRTEILVRE 460


>gi|319943060|ref|ZP_08017343.1| lipoprotein [Lautropia mirabilis ATCC 51599]
 gi|319743602|gb|EFV96006.1| lipoprotein [Lautropia mirabilis ATCC 51599]
          Length = 319

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 79/241 (32%), Gaps = 16/241 (6%)

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
           S      +       G   ++     +   +     +   +  + +              
Sbjct: 10  SAQSLTVQARPQTGTGRGARQAVVTAVAVALLVAGCAGMDDTQRRTAAGAGIGAAVGAAL 69

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
                      N  L   +   I      +++++  + +    +G        GV    T
Sbjct: 70  GGNAAGGKGVRNGALIGGAIAGIGTYIWSRQMEEQKRAMEEATAGT-------GVQVTQT 122

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279
           R  +L   +D  +   F  +S+  LP    +L +  + L  +    + I GHTD++    
Sbjct: 123 RENLL--QLDIPSDISFRVNSAAILPNFQPILDRFAQTLVANPATTVQIIGHTDSTGTDA 180

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           I      LS++RA SA   L+  GV   RI  I G         +      + NRR++I 
Sbjct: 181 INNP---LSVNRAASARDYLVARGVQVSRIM-IDGRGSRDPIADNSTPAGRAQNRRVEIY 236

Query: 338 V 338
           V
Sbjct: 237 V 237


>gi|255323068|ref|ZP_05364204.1| outer membrane fibronectin-binding protein [Campylobacter showae
           RM3277]
 gi|255299930|gb|EET79211.1| outer membrane fibronectin-binding protein [Campylobacter showae
           RM3277]
          Length = 332

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           N   GV+ + T    +I + D      FD  S    P+ +  ++K+   +  +    + +
Sbjct: 205 NTPAGVVVDETGCEKVIVLRDIGVNFAFD--SYKITPKYLEEIRKVANFMGENPGYRVVL 262

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD+         N +LS  RA +  + L + GVS D+I+ + G+   +   ++    
Sbjct: 263 SGHTDSV---GAEAYNQKLSEKRANAVAKALEELGVSADKITTV-GYGELKPVASNKTKE 318

Query: 327 MNSANRRID 335
             + NRR++
Sbjct: 319 GRAENRRVE 327


>gi|126741131|ref|ZP_01756812.1| hypothetical protein RSK20926_01427 [Roseobacter sp. SK209-2-6]
 gi|126717768|gb|EBA14489.1| hypothetical protein RSK20926_01427 [Roseobacter sp. SK209-2-6]
          Length = 346

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              I+ +  +  F   +S    ++I  L  + ++++   E +I + GHTD    +     
Sbjct: 232 RFEILSRSRSVNFAPGTSRLDGKSISFLDSLYDIVSRCPELIIEVGGHTDD---KGSEAA 288

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           N RLS  RA S  + L   G+  +R+    G+      + +      + NRRI  +V++
Sbjct: 289 NIRLSQKRANSVVRYLAGKGIQTERLVA-QGYGEASPLVPNTSAANRAKNRRITFVVQN 346


>gi|289664228|ref|ZP_06485809.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668820|ref|ZP_06489895.1| OmpA family outer membrane protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 365

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ I +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365


>gi|239818112|ref|YP_002947022.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239804689|gb|ACS21756.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 219

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPET 248
           +R+++  +++ +   G        GV    T    + + I    +   FD   S      
Sbjct: 74  QRMENQKRQMEAATQGT-------GVAVTQTPNNELKLQI---PSDVSFDVGRSNIKSNF 123

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             VL +    L ++    + I GHTD +    I      LS+DRA S    L+  GVS  
Sbjct: 124 APVLDQFASGLRNNPNAEVRIIGHTDNTGSDAINNP---LSVDRAASTRDYLVARGVSAA 180

Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
              +I G   H     +  D   + NRR++I V +R
Sbjct: 181 -AFRIEGRGSHEPIANNNSDAGRAQNRRVEIYVGER 215


>gi|149203135|ref|ZP_01880106.1| OmpA/MotB [Roseovarius sp. TM1035]
 gi|149143681|gb|EDM31717.1| OmpA/MotB [Roseovarius sp. TM1035]
          Length = 210

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +   I+      +F    +   P     L K+ + L    
Sbjct: 76  EAELRQQLDGDVRIVNTGDRL---ILTMPQDILFPVDGATVAPALRDDLFKVSQSLQAYP 132

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + GHTD+      A  N  LSL RA +   VL   GV   R+  I G    +   
Sbjct: 133 NTTVQVVGHTDSD---GDAGYNQGLSLRRANAVADVLASGGVPYARLRAI-GRGEDQPVA 188

Query: 323 AS--DPMNSANRRIDILVED 340
           ++      + NRR++I++  
Sbjct: 189 SNLTSEGKAQNRRVEIVILP 208


>gi|110597916|ref|ZP_01386198.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340493|gb|EAT58979.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Chlorobium
           ferrooxidans DSM 13031]
          Length = 229

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           N V GV  E    GI +++    +  +F   SS     +   ++K+  +     +  + I
Sbjct: 88  NEVNGVQVEREGEGIRVTM---DSGILFTSGSSTLTSTSRANIEKLARIFNRYNDTKVVI 144

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GHTD +     A  N  LS  RA S  ++L   GVS+ R+S + G+   R   ++D   
Sbjct: 145 EGHTDNT---GSAASNQLLSERRAESVAKLLSAYGVSDRRLSPV-GYGQSRPVASNDTEY 200

Query: 329 SA--NRRIDILV 338
               NRR+++L+
Sbjct: 201 GRQNNRRVEVLI 212


>gi|110807356|ref|YP_690876.1| putative outer membrane lipoprotein [Shigella flexneri 5 str. 8401]
 gi|229088112|ref|NP_709330.3| putative outer membrane lipoprotein [Shigella flexneri 2a str. 301]
 gi|229089132|ref|NP_839340.2| putative outer membrane lipoprotein [Shigella flexneri 2a str.
           2457T]
 gi|110616904|gb|ABF05571.1| putative outer membrane protein [Shigella flexneri 5 str. 8401]
 gi|281602912|gb|ADA75896.1| putative outer membrane protein [Shigella flexneri 2002017]
 gi|313647591|gb|EFS12041.1| inner membrane lipoprotein yiaD [Shigella flexneri 2a str. 2457T]
 gi|332750012|gb|EGJ80424.1| inner membrane lipoprotein yiaD [Shigella flexneri K-671]
 gi|332750169|gb|EGJ80580.1| inner membrane lipoprotein yiaD [Shigella flexneri 4343-70]
 gi|332751243|gb|EGJ81646.1| inner membrane lipoprotein yiaD [Shigella flexneri 2747-71]
 gi|332997456|gb|EGK17072.1| inner membrane lipoprotein yiaD [Shigella flexneri K-218]
 gi|333012432|gb|EGK31813.1| inner membrane lipoprotein yiaD [Shigella flexneri K-304]
          Length = 216

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 80  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 138

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 139 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 194

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 195 ASNSTAEGKAQNRRVEITL 213


>gi|295095145|emb|CBK84235.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMKGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAAVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N RLS  RA S    L+  GV  +RI + SG       
Sbjct: 142 NKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASSLIAQGVEANRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220


>gi|225024888|ref|ZP_03714080.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC
           23834]
 gi|224942346|gb|EEG23555.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC
           23834]
          Length = 219

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G  I +    +   F  +SS   P+ +  L  +  VL    E  I++ GHTD +
Sbjct: 91  VEVQRQGDQIKLT-MPSGVTFATNSSSLSPDAVNSLNTVANVLTQYPETTITVAGHTDNT 149

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                 R N  LS +RA S    L   GV+  RIS + G+         +++   + NRR
Sbjct: 150 ---GNDRINNPLSKNRARSVAGYLTGRGVAASRISTV-GYGSRSPVADNSTESGRAQNRR 205

Query: 334 IDILV 338
           ++IL+
Sbjct: 206 VEILI 210


>gi|302187874|ref|ZP_07264547.1| ompA family protein [Pseudomonas syringae pv. syringae 642]
          Length = 260

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E        ++ +        +      D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLAKAEQAFRNDDDVQKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             ++        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTSQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  + +  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   RI  +  G  +     +S+   + NRR+++ + +
Sbjct: 192 QSLSERRADSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248


>gi|315187219|gb|EFU20976.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 430

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  L+ L  +N       E    GI I++        F    ++ LP     L  + E L
Sbjct: 299 AEELASLGEEN-----SVEKVPEGIKITLRTLH----FLPDQAVLLPGEEAKLDILAEAL 349

Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             + +  I + GHT              LS+ RA +  + L+K G+  DR+    G    
Sbjct: 350 KKAPDRTILVVGHTADVGKPQGQM---ALSVARAKTIVEELVKRGIEPDRLI-YLGKGGT 405

Query: 319 RLKIASDPMNSA--NRRIDILVED 340
                +        NRR++I + +
Sbjct: 406 EPVAPNHTEEGRRLNRRVEIFLLE 429


>gi|158422035|ref|YP_001523327.1| outer membrane protein [Azorhizobium caulinodans ORS 571]
 gi|158328924|dbj|BAF86409.1| outer membrane protein [Azorhizobium caulinodans ORS 571]
          Length = 381

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +S++  PE+   L +I  +L  + +  + + GHTD          N +LS  RA +
Sbjct: 278 LFDFNSAVIKPESKATLDEIASLLRKAPDLKLVVVGHTDNV---GGMDSNMKLSQARAEA 334

Query: 295 AYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337
             + L++   ++  R+    +GF        +D   + NRR++++
Sbjct: 335 VRRALVEQYAIAAARLQAWGAGFMAPVASNRTDEGRAKNRRVELV 379


>gi|83643665|ref|YP_432100.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83631708|gb|ABC27675.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 494

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
            F   ++Q  E    +L R  ++   L  +    +    +    L  + +E    +   +
Sbjct: 280 PFEKGSAQVKESINEALNRLQQEKLTLRHALTEAEVREVQSAASLETMKQEMEQKLLAVQ 339

Query: 191 RLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
              D  K+ +  +         +      +  R    + I        F   SS    + 
Sbjct: 340 LETDAVKRANEEIQRRFEFVQELFTLTEADVYRQNANVLIRAHGFK--FASGSSEVQRDN 397

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSE 306
           + +L KI + +       I I GHTD    R     N  LS  RA +  + L   G +  
Sbjct: 398 VTLLNKIIDAIEAFPNCKIRISGHTDN---RGDRALNQSLSEKRASNVAKFLANVGSIDS 454

Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            RI    GF   R    +D     +ANRR+++L+ +
Sbjct: 455 SRIEA-EGFGASRPVANNDTKEGRAANRRVEVLIIN 489


>gi|192362185|ref|YP_001983947.1| OmpA domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688350|gb|ACE86028.1| OmpA domain protein [Cellvibrio japonicus Ueda107]
          Length = 349

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           D   K  +T+SGL  D     V+ E T   ++I++       +FD + S   P+ +  ++
Sbjct: 203 DSKDKCPNTVSGLKVDADGCPVVLEKT---LVINL-----EILFDTAKSEVKPQYLPQVK 254

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311
           K+ + L      V+++ GHTD+      A  N RLS  RA +    L++  G++ DR++ 
Sbjct: 255 KLADALTQYENTVVTVEGHTDSQ---GSAAFNKRLSQQRADAVKAALVEKFGIAADRVTA 311

Query: 312 ISGFAHHRLKIASDP--MNSANRRI 334
           + G+   R    +      + NRR+
Sbjct: 312 V-GYGLERPIANNATAEGRAQNRRV 335


>gi|284036695|ref|YP_003386625.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283815988|gb|ADB37826.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 658

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           +  N   F+        ++   L ++   +  +    + I GHTD    +  A  N  LS
Sbjct: 550 ETLNNLFFESGRYDLAEKSRTELDRLSVFMQANPTVAVEISGHTDD---KGDAAANLALS 606

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             RA +    L K+G+   RI  + G+   R  + +  D     NRRID
Sbjct: 607 QKRAQAVVTYLTKAGIQPSRIKAV-GYGKARPLVPNTTDENRRLNRRID 654


>gi|99082288|ref|YP_614442.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99038568|gb|ABF65180.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 221

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 17/211 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
              S  +    N     +  G  +        + + +    +   +   +      + L 
Sbjct: 23  DPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVGALAGGLIGRELD 82

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
               ++  +L           +    T   +++S+    N   F   S+         L+
Sbjct: 83  KQEAELRQSLDN-------DSISIVNTGDRLIVSL---PNDLTFATDSAAISSVVRSDLR 132

Query: 254 KIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+   L      I  + GHTD+      A  N+ LS  RA +    +   GVS  R+ +I
Sbjct: 133 KVAGSLQRYPGSIVQVIGHTDSD---GAASYNYSLSERRANAVADEIAAGGVSYGRM-RI 188

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            G    +   ++      + NRR++I++  +
Sbjct: 189 IGRGEDQPVASNLTPEGKARNRRVEIVIIPQ 219


>gi|222086409|ref|YP_002544943.1| outer membrane lipoprotein [Agrobacterium radiobacter K84]
 gi|221723857|gb|ACM27013.1| outer membrane lipoprotein [Agrobacterium radiobacter K84]
          Length = 222

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I I++  +   FD       PE    L  +  VL        I + 
Sbjct: 91  LQGTGVSVTRVGDRI-ILNMPSAITFDIDRDEIKPEFFATLNSVAIVLRKF-NRTLIDVN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD++      + N  LS  RA S    L   G+ + R+S + GF   +     A++  
Sbjct: 149 GHTDST---GSLQHNQDLSERRAGSVASYLGSQGIDQRRVSAV-GFGPTQPVASNANESG 204

Query: 328 NSANRRIDILV 338
            + NRR++I +
Sbjct: 205 RAQNRRVEIQI 215


>gi|254447788|ref|ZP_05061253.1| OmpA family protein [gamma proteobacterium HTCC5015]
 gi|198262568|gb|EDY86848.1| OmpA family protein [gamma proteobacterium HTCC5015]
          Length = 225

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268
             ++       R G  I++I       F   SS        VL  +  VL    + I ++
Sbjct: 92  EKLRDSGVSVERDGDNINLI-MPGNITFQTDSSDVSSSFYNVLDSVAIVLEEFDKTIVAV 150

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GHTD++        N  LS  RA S    L   GV  +R   + GF   R    +   +
Sbjct: 151 SGHTDST---GSDSYNQVLSEKRASSVASYLKSKGVLNERFE-VIGFGEARPIADNSTES 206

Query: 329 SA--NRRIDILVED 340
               NRR++I +  
Sbjct: 207 GREQNRRVEITLLP 220


>gi|166710885|ref|ZP_02242092.1| outer membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 365

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ I +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365


>gi|326799819|ref|YP_004317638.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326550583|gb|ADZ78968.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 434

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 12/280 (4%)

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
           + +      F    +    G+ +  N       N  +    + ++ N VD+        +
Sbjct: 162 QELGSTTKAFIPAGLGFKFGVANGINIDLGYQVNLANTGTLDGLSTNKVDMFSYVHAGLE 221

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                    F  + +   +  K       E    L    +  +++  +    L     + 
Sbjct: 222 FALGDATKPFLGNRNPVVDMRKEYQASYDELAAALKAQKEENEALKAQLTTDLADDDGDG 281

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPM-FDKS 240
           +     K        K+  +   L  A  +V+ +            ++D+    + FD S
Sbjct: 282 VANKFDKCPGTAADAKVDGSGCPLPEAKKVVQQITVTEEDR----RVVDEAIKNLEFDLS 337

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
            +   P +   L K+  +L      + + GHTD +      + N RLS +RA +    L+
Sbjct: 338 KATIRPTSYPSLDKVARLLVEKNFSLKLAGHTDNT---GSMKLNMRLSKERAEAVKAYLV 394

Query: 301 KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             G +  RI   +G+   +     A+     ANRR++  +
Sbjct: 395 SKGANPSRIEA-TGYGPTQPIATNATAEGRQANRRVEFTL 433


>gi|311106926|ref|YP_003979779.1| OmpA family protein 3 [Achromobacter xylosoxidans A8]
 gi|310761615|gb|ADP17064.1| OmpA family protein 3 [Achromobacter xylosoxidans A8]
          Length = 199

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 18/150 (12%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            +++ + GL A +   G+     +  + ++++      +FD   +   P     L+ I  
Sbjct: 56  DLNAQIDGLAARH--DGLSVRQDKNAVTVAML---GDVLFDFDKTAIRPAAEPTLRDIAS 110

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++  S+   ++I GHTD+   +  A  N  LSL RA +  Q L   GV + R++ + G  
Sbjct: 111 LIKASSAGTVAIEGHTDS---KGSASYNKDLSLRRAQAVAQWLTSHGVDKARLT-VKGLG 166

Query: 317 HHRLKI-------ASDP-MNSANRRIDILV 338
             +          A +P   + NRR++ ++
Sbjct: 167 DTQPIQSNRLANGADNPQGRAQNRRVEFVL 196


>gi|300716419|ref|YP_003741222.1| type IV / VI secretion system family protein, DotU [Erwinia
           billingiae Eb661]
 gi|299062255|emb|CAX59372.1| Type IV / VI secretion system family protein, DotU [Erwinia
           billingiae Eb661]
          Length = 408

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           +  P    E +      + + DL  ++   +       + + +       G  + I   +
Sbjct: 234 WQTPLPKAEPVRRSNSTQAMLDLRTRLDDLI-------VDRTLDVADGANGSKVIIAADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
              +F++  S   P    ++ ++   + +    + +  +TD  P R      N+  SL +
Sbjct: 287 ---LFNRGGSDLTPAGRAIMVRVAAAMDNIKGTLQVSVYTDNQPQRTARFPSNYEYSLAQ 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A++   +L +  +    + +  G       + +D     + NRR++IL+
Sbjct: 344 AHTLTSLLQQLMIQPGHMIRGEGRGDSNPLLPNDSQENRAQNRRVEILL 392


>gi|114777177|ref|ZP_01452188.1| outer membrane protein [Mariprofundus ferrooxydans PV-1]
 gi|114552322|gb|EAU54805.1| outer membrane protein [Mariprofundus ferrooxydans PV-1]
          Length = 212

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+   P ++  L K    L   +T  + +  HTD+         N  LS  RA S 
Sbjct: 110 FDNDSAKLRPASVATLDKAVATLNRRATIKVEVAAHTDS---SGSDAYNLSLSERRAASV 166

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              L+  G+   R++   G+   +   ++      + NRR+++ V +
Sbjct: 167 RDYLVAHGIDAARLTS-KGYGETQPIASNATKEGRAKNRRVELRVMN 212


>gi|300778373|ref|ZP_07088231.1| inorganic diphosphatase [Chryseobacterium gleum ATCC 35910]
 gi|300503883|gb|EFK35023.1| inorganic diphosphatase [Chryseobacterium gleum ATCC 35910]
          Length = 909

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS   P   + L  + E+L       I + G+TD          N  LS  RA +A
Sbjct: 805 FETGSSDLKPGYELQLNTLAEILNAYPNLKIKLGGYTDN---SGNEESNLSLSNLRAQTA 861

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSANRRIDILVE 339
              L++ GVS DRI    G+           +D   + NRRID+ V 
Sbjct: 862 KLKLLELGVSADRIEA-EGYGSQHPVCEANDTDECKAKNRRIDVRVL 907


>gi|148252339|ref|YP_001236924.1| OmpA domain-containing protein [Bradyrhizobium sp. BTAi1]
 gi|146404512|gb|ABQ33018.1| putative outer membrane protein with ompA domain [Bradyrhizobium
           sp. BTAi1]
          Length = 464

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    ++  +L ++ E+        + I GHTDA      A  N  LS  RA + 
Sbjct: 363 FETGRSDLDRDSTGLLDRLVEIAMRCPAANVEIAGHTDAE---GDAAANQALSEKRAQAV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+K+G+  +R + + G+   +   ++D     + NRRI+ LV
Sbjct: 420 VDYLVKAGLPAERFTAV-GYGSAQPVASNDTGDGRAQNRRIEFLV 463


>gi|332996878|gb|EGK16497.1| inner membrane lipoprotein yiaD [Shigella flexneri K-272]
 gi|333013437|gb|EGK32809.1| inner membrane lipoprotein yiaD [Shigella flexneri K-227]
          Length = 219

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|325918947|ref|ZP_08181016.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534834|gb|EGD06761.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 365

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+   +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAQSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 365


>gi|254719262|ref|ZP_05181073.1| OmpA family protein [Brucella sp. 83/13]
 gi|265984261|ref|ZP_06096996.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306838013|ref|ZP_07470871.1| OmpA family protein [Brucella sp. NF 2653]
 gi|264662853|gb|EEZ33114.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13]
 gi|306406937|gb|EFM63158.1| OmpA family protein [Brucella sp. NF 2653]
          Length = 220

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
            +G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 90  SQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 204

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 205 AQNRRVEIQISPLRG 219


>gi|108763188|ref|YP_632960.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467068|gb|ABF92253.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 615

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273
           L E     +++          F+ + +     +  +L  +  V+    E+  + +  HTD
Sbjct: 485 LVEIRPDRLVV-----MGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTD 539

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
               R    DN RLS  RA +  Q L+   ++ +R+  + G+   R   ++   N    N
Sbjct: 540 D---RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENN 595

Query: 332 RRIDILVEDRQ 342
           RR++ L+ D Q
Sbjct: 596 RRVEFLLADPQ 606


>gi|218960421|ref|YP_001740196.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729078|emb|CAO79989.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 781

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 220 TRTGILISIIDQRN-----TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTD 273
            R  + +  +D           FD  S++   E+  +L +I   +L + T  + I GHT 
Sbjct: 656 VRQDLRLEPLDLDKVFVFSNIQFDYDSAVLKAESYPILNEIALTLLNNPTIRVEISGHTC 715

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331
            +      + N  LS +RA +    L   GV+ +R+  + G+   R    +  +   + N
Sbjct: 716 ENQ--GGEKYNTTLSENRAAAVLSYLKGKGVNANRMISV-GYGLSRPLNNNLSEEDKALN 772

Query: 332 RRIDILV 338
           RR+++ +
Sbjct: 773 RRVEVKI 779


>gi|262279684|ref|ZP_06057469.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202]
 gi|262260035|gb|EEY78768.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202]
          Length = 473

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A       Q ++  +S++ + L A +   
Sbjct: 295 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPVTAEQSVSNSLSASQTALTAID-PN 353

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   +++ GHT
Sbjct: 354 NVDVNALVKALNLQIIN------FASGSSEIPADNKAILDQAVTLLNKVSGVKLNVGGHT 407

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D++     A  N  LS  RA +    L   GV   ++    G    +      +D     
Sbjct: 408 DST---GNAASNKALSQRRAQAVVDYLTSKGVDASKLVA-QGHGSDQPVAENTTDEGRFK 463

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 464 NRRIEFSV 471


>gi|311108875|ref|YP_003981728.1| OmpA family protein 4 [Achromobacter xylosoxidans A8]
 gi|310763564|gb|ADP19013.1| OmpA family protein 4 [Achromobacter xylosoxidans A8]
          Length = 264

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            ++ +   Q +A   +++L+          V       G+L  ++  R    F+  S+  
Sbjct: 111 EVQNEASRQQIASAFATSLNPTYKIVNGLRVSASKDEQGLLDQVLTNRVVE-FETGSATL 169

Query: 245 LPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                 +L K+ +V+    ++ + I GHTD+         N  LS  RA +    L+  G
Sbjct: 170 TTRGRELLDKVADVVPKLHSDKVQIIGHTDS---SGSRSTNLALSQARADAVKTYLVDKG 226

Query: 304 VSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
           +   R   + G    +     A+    + NRRI+
Sbjct: 227 LPPARFETL-GAGPDQPLATNATAEGRAKNRRIE 259


>gi|223039024|ref|ZP_03609315.1| outer membrane fibronectin-binding protein [Campylobacter rectus
           RM3267]
 gi|222879663|gb|EEF14753.1| outer membrane fibronectin-binding protein [Campylobacter rectus
           RM3267]
          Length = 293

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           N   GV+ + T    +I + D      FD  S    P+ +  ++K+   +  +    I +
Sbjct: 166 NTPAGVVVDETGCEKVIFLRDLDVNFAFD--SYKITPKYLEEIKKVAMFMGENPGYRIVL 223

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD+         N +LS  RA +  + L + GVS D+I+ I G+   +    +    
Sbjct: 224 SGHTDSV---GTEAYNQKLSEKRANAVAKALEELGVSADKITAI-GYGELKPIATNKTKE 279

Query: 327 MNSANRRID 335
             + NRR++
Sbjct: 280 GRAENRRVE 288


>gi|77918162|ref|YP_355977.1| hypothetical protein Pcar_0547 [Pelobacter carbinolicus DSM 2380]
 gi|77544245|gb|ABA87807.1| conserved OmpA/MotB domain protein [Pelobacter carbinolicus DSM
           2380]
          Length = 420

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   ++  PE    L K    +  +  V  I + GHTD+   +     N RLS  RA +
Sbjct: 312 FDFDQAVIKPEFKGELDKAAAFVRANANVPFILLAGHTDS---KGRDTYNQRLSEKRAEA 368

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
             Q L+ + G+   ++    G+   +    +D       NRR++++
Sbjct: 369 VRQALIDNYGLDAAKLKS-RGYGEAQPVATNDTEEGRYLNRRVELI 413


>gi|330993342|ref|ZP_08317277.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
 gi|329759372|gb|EGG75881.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
          Length = 364

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +     +  ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 256 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTAAHPGPRGQQYNLGLSMRR 315

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV  + I  I G+      + +  D     NRR++I++
Sbjct: 316 AESVKAELIRDGVPANAID-IHGYGEAHPLVPTGPDTREPQNRRVEIIL 363


>gi|74314194|ref|YP_312613.1| putative outer membrane lipoprotein [Shigella sonnei Ss046]
 gi|73857671|gb|AAZ90378.1| putative outer membrane protein [Shigella sonnei Ss046]
 gi|323166955|gb|EFZ52694.1| inner membrane lipoprotein yiaD [Shigella sonnei 53G]
          Length = 219

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLTEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|302381938|ref|YP_003817761.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192566|gb|ADL00138.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 356

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 13/207 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N   S   +++     +    L  +     ++   +   + P++   +        L   
Sbjct: 135 NESGSGDNRSTSNPRFQAMLPLDGAFGGGTALGASQMSGMRPVAVSTLRTSAGTGSLAGG 194

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A   +S+L+ + A  +   +    T  G ++++        FD   +   P+    L ++
Sbjct: 195 AGVATSSLATVQA--LKSDLGAIETDRGTVVALS---GDVTFDFDQATIRPDARPTLDRL 249

Query: 256 GEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            E++  +  T  I+I GHTD+         N  LS  RA +    L+  G S DR+  + 
Sbjct: 250 AELIQATGGTGRIAIEGHTDSE---GTDAYNHDLSERRAEAVKAYLVPRGTSGDRLEAM- 305

Query: 314 GFAHHRLKIAS--DPMNSANRRIDILV 338
           G    R  +A+  D     NRR+++++
Sbjct: 306 GIGEARPAVANDDDAGRRRNRRVEVIL 332


>gi|260778449|ref|ZP_05887341.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604613|gb|EEX30908.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 222

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 16/213 (7%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C+ +  +++  G+    S      +       +   + +     ++   +        
Sbjct: 15  SGCQATQRQNATTGESETNSVTKGALLGALAGAAVGLATGDDATERRQHALIGAAGGAAV 74

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETIVVL 252
               G   D     +  E   +G+ +  +   N  M        F   S    P     L
Sbjct: 75  GGGVGYYFDQQEAALRKELLDSGVQVERV-GENQLMLRMENGIGFQTGSYNLDPSIHNTL 133

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           + + ++L    +  + I GHTD++        N  LS  RA S    L+  GV+  R   
Sbjct: 134 RGVAKILVEYPDTSLVIEGHTDST---GSDTTNQVLSERRAESVRSYLISQGVASGRAIA 190

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             G         ++     + NRR++I +   +
Sbjct: 191 -RGNGERFPLCTNNTSEGRACNRRVEIKILPLK 222


>gi|107100485|ref|ZP_01364403.1| hypothetical protein PaerPA_01001510 [Pseudomonas aeruginosa PACS2]
          Length = 188

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   SS         L  I E L    ++  +SI GHTD+         N +LS  RA +
Sbjct: 83  FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
               L+ +GV    I  + G    +    +      + NRR++IL++ 
Sbjct: 140 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIKR 187


>gi|254475762|ref|ZP_05089148.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214030005|gb|EEB70840.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 219

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 17/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L    +++  ++S         G+    T   +++S+    N   F   SS   P   
Sbjct: 78  NQLDAQERELRQSISN-------DGITIVNTGDRLIVSL---PNDLTFATDSSAISPAVR 127

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+   L       + + GHTD+      A  N  LS  RA +    +   GV  +R
Sbjct: 128 SDLNKVAASLVRYPNSLVQVIGHTDSD---GSASYNQALSERRANAVADQIQAGGVPYNR 184

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           +  I G    +   ++      + NRR++I+V  +
Sbjct: 185 L-AIIGRGEDQPVASNLTPEGKARNRRVEIVVIPQ 218


>gi|170720329|ref|YP_001748017.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169758332|gb|ACA71648.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 237

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +IS+ D +   MF   S+     +   LQ +   L       I + GHTD          
Sbjct: 125 VISL-DDQGQVMFAFDSADLTAGSQQRLQSLLPRLNELGVSRIKVVGHTDNV---GSDSY 180

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           N  LS  RA S  Q L+  G++  +++   G         +D     + NRR+D+ +
Sbjct: 181 NQALSERRAASVAQYLISQGLAPQKVTS-EGRGASEPVAENDTEQGRAQNRRVDLHL 236


>gi|126666899|ref|ZP_01737875.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
 gi|126628615|gb|EAZ99236.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
          Length = 232

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +     ++G      R G  IS++       FD + +    +    L+ +  VL    
Sbjct: 96  QEVQLRQQLEGTGVRVVRNGDEISLV-MPGNITFDLNQTSIRSQFAGTLESVALVLKEFD 154

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           + +I I GHTD+         N  LS  RA S    L+  G+ E R ++  G+       
Sbjct: 155 QTIIQIEGHTDSQ---GGDSYNQLLSERRASSVRDFLLNQGI-ESRRTRAVGYGERYPVA 210

Query: 323 ASDPMNSA--NRRIDILVED 340
           ++D       NRR+++ +  
Sbjct: 211 SNDTSGGREQNRRVELTLVP 230


>gi|17987069|ref|NP_539703.1| outer membrane protein [Brucella melitensis bv. 1 str. 16M]
 gi|261222366|ref|ZP_05936647.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|261325291|ref|ZP_05964488.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|265988867|ref|ZP_06101424.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|265991281|ref|ZP_06103838.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995118|ref|ZP_06107675.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998331|ref|ZP_06110888.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|265999432|ref|ZP_05466341.2| bacterial outer membrane protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|17982726|gb|AAL51967.1| outer membrane protein [Brucella melitensis bv. 1 str. 16M]
 gi|260920950|gb|EEX87603.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94]
 gi|261301271|gb|EEY04768.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33]
 gi|262552799|gb|EEZ08789.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1]
 gi|262766231|gb|EEZ12020.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002065|gb|EEZ14640.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093937|gb|EEZ17871.1| bacterial outer membrane protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661064|gb|EEZ31325.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|326409224|gb|ADZ66289.1| OmpA/MotB domain-containing protein [Brucella melitensis M28]
 gi|326538933|gb|ADZ87148.1| OmpA/MotB domain protein [Brucella melitensis M5-90]
          Length = 232

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD        +    L  +  VL    +  + + G
Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD++     A  N  LS  RA S    L   G+   R   + G+   +   ++      
Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 216

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   +G
Sbjct: 217 AQNRRVEIQISPLRG 231


>gi|83944251|ref|ZP_00956706.1| OmpA family protein [Sulfitobacter sp. EE-36]
 gi|83953292|ref|ZP_00962014.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842260|gb|EAP81428.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83844795|gb|EAP82677.1| OmpA family protein [Sulfitobacter sp. EE-36]
          Length = 222

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 22/217 (10%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               I    N   +     +L            S              +   +       
Sbjct: 22  EPGPIGGNPNDPNANTRNGALIGAGTGAVIGALSKGDGNRAQGALAGAVAGGALGAGYGY 81

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
              K+  DL +++ S             V+   T   +++++       +F   S+    
Sbjct: 82  SLDKQEADLRRQLDS------------DVIITNTGDRLIVTL---PQDILFATDSTQVQA 126

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
                L  +   +   +   + I GHTD+      A  N +LS  RA +   VL+ +GV 
Sbjct: 127 GMQNDLAALARNVNVYSNSTLQIVGHTDSD---GEASYNQQLSEGRARAVANVLVSNGVP 183

Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
             RI  + G    +   +  +    + NRR++I++  
Sbjct: 184 GSRIQSV-GRGESQPVASNLNAAGKAQNRRVEIVILP 219


>gi|224370810|ref|YP_002604974.1| OmpF [Desulfobacterium autotrophicum HRM2]
 gi|223693527|gb|ACN16810.1| OmpF [Desulfobacterium autotrophicum HRM2]
          Length = 213

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  SS   P     L ++ +VL    +  I + GHTD+   +   + N  LS  RA +
Sbjct: 112 FFDFDSSTLKPGAYSELDRVAKVLRDFPQTRIRVEGHTDS---KGTDQYNMLLSQRRAQA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
               L++ GV   R+  I GF   +   ++D     NRR++I++   Q
Sbjct: 169 VTDALVQRGVDPMRMESI-GFGESQPVSSNDGD---NRRVNIVIIPVQ 212


>gi|238020688|ref|ZP_04601114.1| hypothetical protein GCWU000324_00578 [Kingella oralis ATCC 51147]
 gi|237867668|gb|EEP68674.1| hypothetical protein GCWU000324_00578 [Kingella oralis ATCC 51147]
          Length = 224

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             ++G      R G  I +        F  +S+    +    L +  + LA  T+  I+I
Sbjct: 86  EQLQGSGVAVDRQGDQIKLT-MPAAVTFATNSATLSAQAQNSLSQAAQTLATYTDTTITI 144

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GHTD +   N A +N  LS +RA S    L + GV+ +R+  +SG    +     +++ 
Sbjct: 145 VGHTDNT--GNDAINN-PLSYNRAQSVANYLNQHGVAANRM-SVSGQGSRQPVADNSTEA 200

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 201 GRAQNRRVEILINPDQ 216


>gi|284039490|ref|YP_003389420.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283818783|gb|ADB40621.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 361

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++SS I +PE+   L+K+   +  +    I + GHTD        R N  LS +RA   
Sbjct: 260 FEQSSYILVPESSAELEKLVRAMKENPLRSIDVSGHTDNV---GDPRLNLALSENRAKVV 316

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L + G+++DRI+ I G+   R    ++     + NRR++I +
Sbjct: 317 ASYLKRRGIADDRITTI-GYGGTRPIGNNNTEGERAKNRRVEITI 360


>gi|167588752|ref|ZP_02381140.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 224

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIA 281
           +  ++     +F    +   P     L  +   LA         +S+ G+TD+       
Sbjct: 111 VEHVNLAGDALFATGLATLTPTARASLDAL---LARQGNTAFTRVSVTGYTDSV---GGD 164

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             N  LS  RA +    L   G++  R   ++G        ++      ++NRR++I +E
Sbjct: 165 ASNLALSQRRAQAVAGYLKSHGLNA-RTVAVTGRGSADPVASNATAEGRASNRRVEISLE 223

Query: 340 D 340
            
Sbjct: 224 R 224


>gi|116327025|ref|YP_796745.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332316|ref|YP_802034.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116119769|gb|ABJ77812.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116126005|gb|ABJ77276.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 667

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 18/153 (11%)

Query: 199 ISSTLSGLVADNIVKGVLF-----ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +S  L+     N  + V            G  I I    N   F+  S   +PE+   L 
Sbjct: 524 VSQNLNLNSKKNFSEKVEVLLQLPRIEERG-TIQI----NNLFFESKSFRIIPESEPELN 578

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISK 311
           ++ E++  + +  I I GHTD        +DN  LS  RA +  + L  K  +  +RI K
Sbjct: 579 RLAEIMKENPDIKIQIEGHTDNV---GKKKDNLLLSEKRAIAIAEYLSQKHSIPTERI-K 634

Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
             GF  +     +D       NRR++  +   +
Sbjct: 635 TRGFGDNFPLSKNDSEEGRRKNRRVNFTILKSK 667


>gi|327481279|gb|AEA84589.1| ompA family protein [Pseudomonas stutzeri DSM 4166]
          Length = 265

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +  + E            +   R +R+   A+ +++   G   ++ +  +    T  
Sbjct: 84  SEIAAQQGELLQHQEQVARLEMERDRLRRMLQDAQLMTAEQQGRWLEDQMMSLAASETDR 143

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G+++++ D     +F   S+         L K+   L  + +  + I G++D+   R   
Sbjct: 144 GLVMTLGD----VLFHPDSAELGNSANRTLLKLVHFLQLNPQRKVRIEGYSDS---RGDP 196

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
           + N  LS  RA +   +L+  G+  +R+  + G+         AS    + NRR++IL
Sbjct: 197 QANLELSRARAQTVADLLISLGIEAERVE-VRGYGERFPIAENASARGRAQNRRVEIL 253


>gi|124003367|ref|ZP_01688217.1| outer membrane protein [Microscilla marina ATCC 23134]
 gi|123991465|gb|EAY30896.1| outer membrane protein [Microscilla marina ATCC 23134]
          Length = 116

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLD 290
           N   F+ +      ++ V L  + + L  +   IS  I GHTD     + AR N  LS  
Sbjct: 6   NNVFFEYNKYALKDKSKVELDNLVKFLKENP-EISGEISGHTDN--IGDKAR-NRELSQQ 61

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           RA S    L+  GV   R+    G+   +    +D     + NRRI+  + 
Sbjct: 62  RANSVRDYLVSHGVDASRLV-YKGYGDSKPAATNDTEEGRAKNRRIEFKIL 111


>gi|71066360|ref|YP_265087.1| OmpA/OmpF family outer membrane protein [Psychrobacter arcticus
           273-4]
 gi|71039345|gb|AAZ19653.1| outer membrane protein, OmpA/OmpF family [Psychrobacter arcticus
           273-4]
          Length = 217

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++  AK++   ++G        GV       G  I ++    +  F    +         
Sbjct: 74  MERQAKQLEQQMAGT-------GVTVTPNANG-NIDLV-MPGSITFSFDDATLNNSFKPT 124

Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+   +   +   I+I GHTD+   +     N +LS DRAY+    L   GV+ +RI+
Sbjct: 125 LDKLAATMNEYNQNTITIAGHTDS---KGTDAYNMKLSRDRAYAVANYLSARGVASNRIN 181

Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
            +  +   R    ++       NRR+++ V   Q
Sbjct: 182 -VVAYGESRPVADNNSEYGRQQNRRVELTVNAPQ 214


>gi|330504866|ref|YP_004381735.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328919152|gb|AEB59983.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 222

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G +I +I       F   S+         L  +       +   I + G
Sbjct: 91  MQGTGVEVQRQGDVIQLI-MPGNITFATDSAQIASSFYQPLNNLANSFRQYNQNSIEVVG 149

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++        N  LS  RA S    L+  G+   R+    G    +   ++      
Sbjct: 150 HTDST---GSHSHNMALSQRRAQSVADYLLAQGIDPSRV-STRGMGPDQPVASNATADGR 205

Query: 329 SANRRIDILVEDRQG 343
           + NRR+++ +    G
Sbjct: 206 AQNRRVEVTLRPLPG 220


>gi|296282332|ref|ZP_06860330.1| putative outer membrane lipoprotein [Citromicrobium bathyomarinum
           JL354]
          Length = 238

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++SS+  +P +  +L ++   +      I +I GHTD        + N  LS DRA   
Sbjct: 123 FEESSAEFIPGSEELLDELATAMRPCVGAIVAISGHTDT---SGSPKVNLALSQDRAQMV 179

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L++ G+    +   +GF   R      P + ANRRI+
Sbjct: 180 RRELIERGIPGQNLIA-NGFGSSRPVEGLSPADPANRRIE 218


>gi|327403673|ref|YP_004344511.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319181|gb|AEA43673.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 223

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S   P +   L  + E++    E  I I GHTD+       + N +LS  RA S 
Sbjct: 122 FETGKSDLKPISYGALNNLVEIMKRKKEIKIQIDGHTDSD---GDNQANQQLSQKRAESV 178

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L+  G+   R+    G    +    ++     + NRR +I + 
Sbjct: 179 RNYLISKGIDATRVKA-KGNGESKPIADNNTAQGKAQNRRTEITIL 223


>gi|86141022|ref|ZP_01059581.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
 gi|85832964|gb|EAQ51413.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis
           MED217]
          Length = 268

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTD 162
            + K          + +++Y   + N+  L +S  +   +   +L  +S++ ++L    D
Sbjct: 61  QLEKELAQATSERDDLQRKYATAQANLKNLQDSYDALEANSSKALAENSKQNRELLAQLD 120

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +++    E   L  + ++     +R + L+ +     + +  L   + +   L +    
Sbjct: 121 EKQADLAAEQNRLEKMQRDLTERSRRVEELESMIAAKDAKMRAL--KDAISKALVDFEGN 178

Query: 223 GILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
           G+ +   D        N  +F+  S     +    + ++G VLA + E+ + I GHTD  
Sbjct: 179 GLTVEQRDGKVYVSLENKLLFESGSWNVGAKGRQAVNQLGSVLAQNPEIAVLIEGHTDDV 238

Query: 276 PFRNIAR--DNWRLSLDRAYSA 295
           P+       DNW LS  RA + 
Sbjct: 239 PYGGNGPLKDNWDLSTKRATAI 260


>gi|28868712|ref|NP_791331.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969090|ref|ZP_03397229.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301384017|ref|ZP_07232435.1| ompA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058723|ref|ZP_07250264.1| ompA family protein [Pseudomonas syringae pv. tomato K40]
 gi|302131685|ref|ZP_07257675.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851951|gb|AAO55026.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926088|gb|EEB59644.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|331016335|gb|EGH96391.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 260

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 89/237 (37%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E+       ++ +        +      D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPESTKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  +T+  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENTDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +     +S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248


>gi|332995852|gb|AEF05907.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Alteromonas sp. SN2]
          Length = 202

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDAS 275
            +  R G  + +I       F   SS   P    VLQ + +V+ +  + +  I+GHTD +
Sbjct: 77  VQVVREGDNLRLI-MPGDITFATDSSSISPNFNPVLQDVAKVVNNYEKTVLMIKGHTDDT 135

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                 + N  LS  RA +   VL+   V+  RI+ + G   ++ K+ +D   +   NRR
Sbjct: 136 ---GSEQYNQGLSERRAGAVRNVLLNYSVNSTRITTV-GMGEYQPKVPNDTAANRSMNRR 191

Query: 334 IDILVED 340
           +++ ++ 
Sbjct: 192 VELEIQP 198


>gi|331684442|ref|ZP_08385034.1| putative OmpA-family membrane protein [Escherichia coli H299]
 gi|331078057|gb|EGI49263.1| putative OmpA-family membrane protein [Escherichia coli H299]
          Length = 550

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 ERIRQPVLRTIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|253698707|ref|YP_003019896.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251773557|gb|ACT16138.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 333

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+    L+ + + L        +I GHTD+         N +LS  RA S 
Sbjct: 229 FDTNKSDIKPQYHDELKALADFLKEFPNASGTIEGHTDSV---GDKAANMKLSQRRADSV 285

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            + L+   GV+ +R+  + GF   +    +        NRRI+
Sbjct: 286 RKYLVDRFGVAPERVKAV-GFGPTKPAADNKTAAGKQKNRRIE 327


>gi|162452747|ref|YP_001615114.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161163329|emb|CAN94634.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 386

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+       PE+  +L  + +VL  + +  I I+GHTD    +  A  N +LS  RA S 
Sbjct: 281 FEFDKDKIRPESFPILDAVVDVLQQNPKIKIEIQGHTDN---KGAAAYNKKLSDRRAASV 337

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
            + L+  G+ E R++   G+   +  + +  D   + NRR+  +
Sbjct: 338 KKYLVAKGIDEARLTS-KGYGMEQPIVPNTSDQNRALNRRVQFV 380


>gi|300955043|ref|ZP_07167452.1| OmpA family protein [Escherichia coli MS 175-1]
 gi|300318040|gb|EFJ67824.1| OmpA family protein [Escherichia coli MS 175-1]
          Length = 215

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDI 336
            ++      + NRR++I
Sbjct: 198 ASNSTAEGKAQNRRVEI 214


>gi|298528936|ref|ZP_07016339.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510372|gb|EFI34275.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 223

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMF 237
             + +       +LQ L  +    LS   A      V  + T  G +LIS+        F
Sbjct: 65  WNQAVQNQSSSLQLQGLYTQAREKLSTPGAP-----VSVKMTEQGSVLISLF---GEVFF 116

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAY 296
              S+   PE+   LQ+I E+++ +   + + G TD+        R  + +S  RA    
Sbjct: 117 SPGSADLNPESNKYLQQIAEIVSLAQGQVKVAGFTDSRENSVQGDRSIFEISAMRAARIG 176

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           + L +S G+ ++ +  I G    R ++  +    +  NRR++I + D
Sbjct: 177 EELTRSRGLRQENLV-IQGHGTPRPQVPENSPVGSEMNRRVEIRIVD 222


>gi|86135195|ref|ZP_01053777.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85822058|gb|EAQ43205.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 452

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
              + +F+   +         L  I +V+A   +   SI GHTD+      +  N RLS 
Sbjct: 343 TAKSILFNSGRATFKAGVTKQLDAIVDVMAKYPKATFSIGGHTDS---SGSSSLNLRLSE 399

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            RA +    L+K+GV   R+  I G+        +      + NRR++I V +
Sbjct: 400 KRAIAVRDYLVKNGVETTRLEAI-GYGEGFPIDTNKTRAGRANNRRVEIKVTN 451


>gi|332977451|gb|EGK14226.1| outer membrane protein [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV- 265
           N    V+ + T   + + I D+        FD   S+   +    + K+ E +       
Sbjct: 234 NTPANVVVDETGCPVQVQIDDELKMELRVFFDNDKSVIKEQYKPEIAKVAEKMREYPNSS 293

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
            SI GH  AS     AR N RLS  RA +   +L    GV+ +R+S + G+ + R    +
Sbjct: 294 ASIEGH--ASKTGPSARYNQRLSEARAIAVKTMLTNEFGVAPNRLSTV-GYGYDRPIAPN 350

Query: 325 DPM--NSANRRI 334
           D     + NRR+
Sbjct: 351 DTEEGRAMNRRV 362


>gi|259417844|ref|ZP_05741763.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346750|gb|EEW58564.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 221

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
              S  +    N     +  G  +        S + +    +   +   +      + L 
Sbjct: 23  DPASYGAPGGINRSQNGAIIGGLIGAGIGAATSDDDKAETIIGTAAVGALAGGLIGRELD 82

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
               ++  +L           +    T   +++S+    N   F   SS         L+
Sbjct: 83  KQEAELRQSLDN-------DSISIVNTGDRLIVSL---PNDLTFATDSSAISSVVRSDLR 132

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+   L      V+ + GHTD+      A  N+ LS  RA +    +   GVS +R+ +I
Sbjct: 133 KVAGSLQRYPGSVVQVIGHTDSD---GAASYNYSLSERRANAVADEIAAGGVSYNRM-RI 188

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            G    +   ++      + NRR++I++  +
Sbjct: 189 IGRGEDQPVASNLTAEGKARNRRVEIVIIPQ 219


>gi|327404889|ref|YP_004345727.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320397|gb|AEA44889.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 688

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD + +   PE+   ++++ +++       I I GHTD +     A  N  LS  RA +
Sbjct: 584 FFDVNKATLRPESNAEMERLVQLMKDVPRLKIEISGHTDNT---GSATLNETLSQQRAEA 640

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
               L+  G++ +R+    G+   +   +++  +    NRR +  ++
Sbjct: 641 VVAYLVSKGIAANRMIA-KGYGSSQPIASNNSEDGKQQNRRTEFEIK 686


>gi|292491797|ref|YP_003527236.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
 gi|291580392|gb|ADE14849.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4]
          Length = 202

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S   L ET   L ++G +L       E I I GHTDA    +   +NW LS +RA 
Sbjct: 95  FALNSFEILDETRPYLDEVGRLLNMEQFKEERIIIEGHTDAQ--GSENYNNW-LSQERAK 151

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           S    L+ S  V  +R+  + G          +P N  NRR+++
Sbjct: 152 SVKNYLVSSFRVDPERLM-VVGRGEREPLPDLNPNNGLNRRVEL 194


>gi|317064862|ref|ZP_07929347.1| outer membrane protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690538|gb|EFS27373.1| outer membrane protein [Fusobacterium ulcerans ATCC 49185]
          Length = 211

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    + ++ G  +++        F   SS  +      L  I  VL    E  I + G
Sbjct: 82  LKNTEVQVSQNGDNLNLN-LPGGVTFATDSSNIVSSFYGPLNSIATVLVQYPETRIIVNG 140

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329
           +TD     + + +   LS  RA S    L++ GVS  RIS +  G  + R   ++    +
Sbjct: 141 YTDN--VGSASYNV-SLSERRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 197

Query: 330 ANRRIDILVED 340
            NRR+++ +  
Sbjct: 198 ENRRVELEILP 208


>gi|310817591|ref|YP_003949949.1| outer membrane protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390663|gb|ADO68122.1| outer membrane protein [Stigmatella aurantiaca DW4/3-1]
          Length = 632

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 82/271 (30%), Gaps = 11/271 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P         + + D+      ++  +     D    ++S D    +          + +
Sbjct: 357 PLKDEDKDGVEDVADKCPQTPGAASAQGCPDQDGDGIQDSEDKCPAAAGNAAGQGCPDKD 416

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              + ++      +               +  +    +   N    P  K          
Sbjct: 417 GDGIDDASDRCPAEAGPAERQGCPIKDADNDGVLDEQDSCPNEAGLPELKGCPAKDADND 476

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L D      +    +                   I I   +    FD ++S     +  
Sbjct: 477 TLADHLDNCPNEAGPVDNQGCPAKQKQLVAIRQDRIEI---KEAVYFDSNASTIQARSNG 533

Query: 251 VLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L ++ ++L    E++S  I GHTD    R  A  N  LS  RA +    L+K GV+ +R
Sbjct: 534 LLDQMAKLLNEHPEIVSVLIEGHTDD---RGAADYNRTLSKQRADTVRDYLVKKGVAAER 590

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           +    G+   R    +        NRR+D L
Sbjct: 591 LE-TQGYGPDRPVQPNTTAAGRTANRRVDFL 620


>gi|299768758|ref|YP_003730784.1| Outer membrane protein A precursor [Acinetobacter sp. DR1]
 gi|298698846|gb|ADI89411.1| Outer membrane protein A precursor [Acinetobacter sp. DR1]
          Length = 159

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            ++K   F  T  G  + +       +FD +++         L ++   L       + I
Sbjct: 33  KLLKKEGFVLTDEGWTLGL---PERLLFDFNNAELKQSHEAELVRLANQLNKYDLNKLKI 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD       A  N +LS +RA S   + +  G  ++ I  + G    +  + +  + 
Sbjct: 90  VGHTDDV---GDAAYNQKLSEERAQSVANLFLARGFKKENIY-VIGRGSTQPYVPNTTNE 145

Query: 327 MNSANRRIDILVED 340
             + NRR+ I+V  
Sbjct: 146 NRAINRRVAIVVIP 159


>gi|261341826|ref|ZP_05969684.1| hypothetical protein ENTCAN_08313 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316202|gb|EFC55140.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           ++  +++ G+TD++        N RLS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 SKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220


>gi|320182433|gb|EFW57330.1| Putative outer membrane lipoprotein [Shigella boydii ATCC 9905]
          Length = 550

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           + I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542


>gi|330872771|gb|EGH06920.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330964108|gb|EGH64368.1| ompA family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 260

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
            TK + +L+   +N        E+       ++ +        +      D+ K   L  
Sbjct: 21  ATKPNPNLEQARSNFTALQTNPESTKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             N+        ++     A  +         ++ +  + + A  +   +  + T  G L
Sbjct: 81  LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           ++  D     +FD + +   P     + K+   L  +T+  + + G+TD++     A  N
Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENTDRKVIVEGYTDST---GSASYN 191

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248


>gi|218778169|ref|YP_002429487.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759553|gb|ACL02019.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 381

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +    +   ++ K   VL    +  + I GHTD+   R   + N  LS DRA + 
Sbjct: 277 FKTNKADIAKKYYPIMDKAICVLKKYPDLKVLIGGHTDS---RGPDKFNQELSQDRAQAV 333

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
              ++K GV+ +R+  + GF   +   A+D     + NRR+ +
Sbjct: 334 MDYMVKKGVAPERL-SVRGFGAAKPIAANDSKEGRAQNRRVTL 375


>gi|254524607|ref|ZP_05136662.1| hypothetical protein SSKA14_3746 [Stenotrophomonas sp. SKA14]
 gi|219722198|gb|EED40723.1| hypothetical protein SSKA14_3746 [Stenotrophomonas sp. SKA14]
          Length = 250

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           ++ E      R++   DL+  ++S  S  V + +  G         +   II+      F
Sbjct: 98  ITGEVGNEALRQQVASDLS--LASNTSYTVTNALKVGSQQNVLDQTLANRIIE------F 149

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
              S+   P  + +L ++   +A   +    I GHTD          N  LS  RA +  
Sbjct: 150 QSGSARLTPFGMSILDEMVAKMAQMPDSRFLIIGHTDNV---GQRESNLTLSHARALAVK 206

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
             +M  G+    +  + G         +  +   + NRRI+  ++
Sbjct: 207 NYMMSKGIPGSHMD-VLGKGPDEPVADNTSNDGRARNRRIEFKIQ 250


>gi|218961893|ref|YP_001741668.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730550|emb|CAO81462.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 911

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + ++  P+++ +L+ I   +  + T  I + GHTD     +    N +LS  RA + 
Sbjct: 690 FEFNKAVLTPKSLEILKPILATMKENETLEIELSGHTDN--IGSKQY-NRKLSEARAKAV 746

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L+K+G+   RI  + G+   +   ++D       NRR ++ + 
Sbjct: 747 ADYLIKNGIDPKRIKTV-GYGFDKPIASNDTPEGRQRNRRTEMKIL 791


>gi|319796166|ref|YP_004157806.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315598629|gb|ADU39695.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 273

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 79/239 (33%), Gaps = 18/239 (7%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
            ++ +    V  +       +  +R+      +   +            +   + +  + 
Sbjct: 42  GEQVVAGGQVPDEATRVAVIEALRRIYGPSGVVDKIEVVNTVSMPANWSANVQRLITPAL 101

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFET 219
                   +       LS E      R+K + D+A  +  + T+   +   + + +  + 
Sbjct: 102 KDIHRGQFQIEGTQMALSGEVGNEALRQKIVSDMANSLNPTYTIKNSLRVPVSEQITVDQ 161

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
                 I          F+  S+    +   +L ++  +L   T   +++ GHTD     
Sbjct: 162 ALANRTIE---------FELGSATLTRKGRDILDEMAPILQKLTNKSVAVIGHTDN---A 209

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                N  LS  RA +    L+  G+    ++  SG    +     A+D   S NRRI+
Sbjct: 210 GSRASNLALSQSRAEAVKGYLVGKGIDPMTLT-TSGVGPDQPVANNATDEGRSRNRRIE 267


>gi|319952716|ref|YP_004163983.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421376|gb|ADV48485.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 337

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 106/283 (37%), Gaps = 24/283 (8%)

Query: 58  DDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGS 117
           +D  K  +  YF+ + K +M      F+                +D  ++  +++ +   
Sbjct: 74  NDVAKNGMTNYFD-YNKLIMYTGTSFFNADGK---------KAELDFAMSDRTIEFEQYK 123

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            +Q  ++         +   Q        L ++ +K        D   S +  ++Y L  
Sbjct: 124 FDQSIEHYLERIGAQLIFKGQIPREKIEHLNKEDDKTVFKYIQGDPYNS-SPVKHYVLNH 182

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           ++ + I  +       ++      + +  +       +  +  +TG  I  I+      F
Sbjct: 183 VNGKIIFQVWSNSARAEIGVVALESFNQTIKAPTASEMKSDIDKTGKAILNIN------F 236

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D   +   P+   ++ +I  +L  +    +SI GHTD+         N +LS+DRA +  
Sbjct: 237 DTDKATLKPDGETLVAEIFTLLNENDSLKLSIEGHTDS---SGNVERNKQLSMDRANTVL 293

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             L   G++ +R++   GF        +D     + NRR++++
Sbjct: 294 YTLAGKGIAINRLTA-KGFGAKNPISPNDSEENKAKNRRVELV 335


>gi|114800290|ref|YP_762003.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114740464|gb|ABI78589.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 211

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
           G   E  R G  I++    +   F + S+   P     L  +   L       + IRGH 
Sbjct: 84  GTGIEVERQGDQIALT-MPSGISFQQGSAQIQPAFYQTLNDVAATLNEYPSTAVDIRGHA 142

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331
            +   R+    N RLS  RA +    L   GV   R+S +  G  +     +++   S N
Sbjct: 143 SSEGARDF---NQRLSQQRADAVRSYLTNQGVQGVRMSAVGMGIDYPVADNSTEAGRSQN 199

Query: 332 RRIDILVED 340
           RR++I++  
Sbjct: 200 RRVEIILTP 208


>gi|91782349|ref|YP_557555.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|296162308|ref|ZP_06845102.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|91686303|gb|ABE29503.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
 gi|295887462|gb|EFG67286.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 217

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + +  + E+I+ + GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++        N  LS++RA S    L + GV+  R+S   G    +    ++     +A
Sbjct: 145 DST---GQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA-QGMGQTQPIADNNTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|262404553|ref|ZP_06081108.1| outer membrane protein A precursor [Vibrio sp. RC586]
 gi|262349585|gb|EEY98723.1| outer membrane protein A precursor [Vibrio sp. RC586]
          Length = 321

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   P     L K+   L    +  + + GHTD++        N +LS  R
Sbjct: 208 DSGTFANNSAQLKPAMESKLDKLVGYLKQYPQATVEVVGHTDST---GSDAYNQKLSEKR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L   G+   RI+   G        ++        NRR+++++
Sbjct: 265 AQAVAKALEAQGIEASRITA-KGQGESNPIASNATAEGREKNRRVELVI 312


>gi|224372468|ref|YP_002606840.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH]
 gi|223589113|gb|ACM92849.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH]
          Length = 373

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 17/126 (13%)

Query: 219 TTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
            T  G+++   D+    M       FD  S+   P+ +  +++  E L  +      I+G
Sbjct: 249 NTPKGVVV---DEHGCAMTYDFGITFDNDSADIKPQFMKKIEEFAEFLKQNPAYKAEIQG 305

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-- 328
           +TD+   +  A  N +LS  RA + Y+VL+K G+S+DR+    G+       ++D  +  
Sbjct: 306 YTDS---KGSAEYNQKLSERRAKAVYEVLIKQGISKDRL-SYKGYGEANPVASNDTPDGK 361

Query: 329 SANRRI 334
           + NRR+
Sbjct: 362 AQNRRV 367


>gi|253700958|ref|YP_003022147.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251775808|gb|ACT18389.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 222

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           +  R G  I +    +  +FDK+  +  P  +  L +    L  S   I I+GHTD+   
Sbjct: 90  QVERQGEKIYVT-LPSGILFDKNKDLLKPAFMESLARAASSLRESQTDIIIQGHTDS--- 145

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
                 N  LS  RA      L+  GV   R+  I G+   R +  +D   +   NRR+ 
Sbjct: 146 SGSDAINLPLSQRRADRVRDYLVAQGVPTSRLIAI-GYGATRPQFPNDSEANRLLNRRVQ 204

Query: 336 ILV 338
           + +
Sbjct: 205 LEI 207


>gi|146282939|ref|YP_001173092.1| ompA family protein [Pseudomonas stutzeri A1501]
 gi|145571144|gb|ABP80250.1| ompA family protein [Pseudomonas stutzeri A1501]
          Length = 263

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E +  + E            +   R +R+   A+ +++   G   ++ +  +    T  
Sbjct: 82  SEIAARQGELLQHQEQVARLEMERDRLRRMLQDAQLMTAEQQGRWLEDQMMSLAASETDR 141

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G+++++ D     +F   S+         L K+   L  + +  + I G++D+   R   
Sbjct: 142 GLVMTLGD----VLFHPDSAELGNSANRTLLKLVHFLQLNPQRKVRIEGYSDS---RGDP 194

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
           + N  LS  RA +   +L+  G+  +R+  + G+         AS    + NRR++IL
Sbjct: 195 QANLELSRARAQTVADLLISLGIEAERVE-VRGYGERFPIAENASARGRAQNRRVEIL 251


>gi|159045565|ref|YP_001534359.1| OmpA/MotB domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157913325|gb|ABV94758.1| OmpA/MotB domain protein [Dinoroseobacter shibae DFL 12]
          Length = 208

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +      L A+     V    T + +++++       +F   S++        L  +   
Sbjct: 70  LDRQARDLQAELGNDAVQIVNTGSELVVTM---PQDILFAVDSAVVQSTLQSDLAALSRN 126

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L    +  + + GHTD +     A  N  LS  RA +   +L+++GV   R+    G   
Sbjct: 127 LLDYPDTTVQVVGHTDNT---GSAGYNQELSQRRASAVAAILLQNGVPSSRVVA-FGRGE 182

Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341
            +   ++  +   + NRR++I++  R
Sbjct: 183 DQPIASNLDEAGRAQNRRVEIIITPR 208


>gi|260599847|ref|YP_003212418.1| putative outer membrane lipoprotein [Cronobacter turicensis z3032]
 gi|260219024|emb|CBA34379.1| Inner membrane lipoprotein yiaD [Cronobacter turicensis z3032]
          Length = 220

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR+G  I I++  N   FD S +   P     L  +  VL   
Sbjct: 83  VQEAKLRQKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSQANLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N +LS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 PKTAVNVVGYTDST---GGQALNMKLSQQRAESVASALITQGVAANRI-RTSGMGPANPV 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTEEGKAQNRRVEITLSPLQ 220


>gi|124007996|ref|ZP_01692696.1| outer membrane protein [Microscilla marina ATCC 23134]
 gi|123986580|gb|EAY26379.1| outer membrane protein [Microscilla marina ATCC 23134]
          Length = 336

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
             I   +       G+ I +    N   F  SSS     +   L ++   L    + V+ 
Sbjct: 209 KEIKVDLFVTPIEKGVKILL----NNLFFGVSSSKIESTSFDELDRLVRTLNEYPKMVVQ 264

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           + GHTD       A  N  LS  RA S    L   G++  R+ K+ GF   +    ++  
Sbjct: 265 LNGHTDNQ---GGATRNQLLSQHRARSVRNYLANKGIARHRV-KVKGFGASQPIADNNTL 320

Query: 327 -MNSANRRIDILVED 340
                NRR++  V +
Sbjct: 321 KGRIRNRRVEFEVLE 335


>gi|296100590|ref|YP_003610736.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055049|gb|ADF59787.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 220

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMKGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N RLS  RA S    L+  GV  +RI + SG       
Sbjct: 142 NKTAVNVIGYTDST---GSQELNMRLSQQRADSVASSLITQGVEANRI-RTSGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPIQ 220


>gi|256425383|ref|YP_003126036.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040291|gb|ACU63835.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 449

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+  +   L  D + K V+ + T        I D      F+ + S     +   L ++ 
Sbjct: 309 KVDGSGCELPKDTMPKQVITKVTITEDDRRLIKDAIQNLEFEFAKSSIKASSYPSLDRVA 368

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           E+L      + + GHTD       A  N  LS DRA S  Q L++ G +  +I  + G+ 
Sbjct: 369 EMLRTKGFSLKLGGHTDNV---GNATKNMALSKDRAESVKQYLVEHGANPSKIEAV-GYG 424

Query: 317 HHRLKIASDPMNSA--NRRIDILV 338
            ++   ++        NRR++  +
Sbjct: 425 ANQPIASNKTAAGRQKNRRVEFTI 448


>gi|218550833|ref|YP_002384624.1| outer membrane lipoprotein [Escherichia fergusonii ATCC 35469]
 gi|218358374|emb|CAQ91021.1| putative outer membrane lipoprotien [Escherichia fergusonii ATCC
           35469]
 gi|324111886|gb|EGC05866.1| OmpA family protein [Escherichia fergusonii B253]
 gi|325499107|gb|EGC96966.1| outer membrane lipoprotein [Escherichia fergusonii ECD227]
          Length = 219

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD +S+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N RLS  RA S    L+  GV+ +RI+   G       
Sbjct: 142 PKTAVNVLGYTDST---GGYDLNMRLSQQRADSVASALITQGVAANRIN-TRGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|169796598|ref|YP_001714391.1| hypothetical protein ABAYE2575 [Acinetobacter baumannii AYE]
 gi|215484059|ref|YP_002326284.1| OmpA family protein [Acinetobacter baumannii AB307-0294]
 gi|301344741|ref|ZP_07225482.1| OmpA family protein [Acinetobacter baumannii AB056]
 gi|301510762|ref|ZP_07235999.1| OmpA family protein [Acinetobacter baumannii AB058]
 gi|301595171|ref|ZP_07240179.1| OmpA family protein [Acinetobacter baumannii AB059]
 gi|332853538|ref|ZP_08434802.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332868403|ref|ZP_08438134.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|169149525|emb|CAM87414.1| conserved hypothetical protein; putative bacterial outer membrane
           domain [Acinetobacter baumannii AYE]
 gi|213987872|gb|ACJ58171.1| OmpA family protein [Acinetobacter baumannii AB307-0294]
 gi|332728571|gb|EGJ59943.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332733402|gb|EGJ64585.1| OmpA family protein [Acinetobacter baumannii 6013113]
          Length = 471

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   T   + + GHT
Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVTGVKLDVGGHT 405

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 462 NRRIEFSV 469


>gi|30043431|gb|AAP19151.1| putative outer membrane protein [Shigella flexneri 2a str. 2457T]
 gi|56383924|gb|AAN45037.2| putative outer membrane protein [Shigella flexneri 2a str. 301]
 gi|332763439|gb|EGJ93678.1| ompA family protein [Shigella flexneri 2930-71]
          Length = 208

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 72  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 130

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 131 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 186

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 187 ASNSTAEGKAQNRRVEITL 205


>gi|320535353|ref|ZP_08035469.1| OmpA family protein [Treponema phagedenis F0421]
 gi|320147797|gb|EFW39297.1| OmpA family protein [Treponema phagedenis F0421]
          Length = 437

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            +  + +      +        I I++ D R    F   S   LPE    +  I   L  
Sbjct: 302 NIKKMFSKETPDSINMRPGINTIKITMYDIR----FIADSPEILPEEKGRVDIIARALRA 357

Query: 262 ST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                   I GHT      N  ++   LS+ RA    + L K G+   R++  +G+   R
Sbjct: 358 MGPYTKFLIEGHTADI---NQPKNQLVLSVARADKIAEELAKRGIDASRMT-TAGYGGTR 413

Query: 320 LKIASD--PMNSANRRIDILVED 340
               +D  P  + NRR++I +  
Sbjct: 414 PIAPNDTSPNRAKNRRVEITIMR 436


>gi|347155|gb|AAC36900.1| protein F [Pseudomonas fluorescens]
          Length = 317

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K G++ +R+S + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315


>gi|312795362|ref|YP_004028284.1| OmpA family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167137|emb|CBW74140.1| OmpA family protein [Burkholderia rhizoxinica HKI 454]
          Length = 224

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           + I + LSG  A     G        G + ++I    ++  FD +S    P    VL ++
Sbjct: 81  QAIKNKLSGATAG---TGTQVSEQPDGSLKLNI---PSSVSFDTNSYAIKPSFTPVLDQV 134

Query: 256 GEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            + L    E+++ + GHTD++      R N  LS +RA S  Q L   GV+  R++   G
Sbjct: 135 AQTLTQHPELVAHVVGHTDST---GQPRYNQMLSQERAQSVAQYLALHGVAAQRLAA-EG 190

Query: 315 FAHHRLK--IASDPMNSANRRIDILV 338
               +     +++   + NRR++I +
Sbjct: 191 RGQSQPIADNSTEAGRAQNRRVEIYL 216


>gi|312890939|ref|ZP_07750468.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296722|gb|EFQ73862.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 252

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           +  R G  I I+   +  +FD   +   P     + ++   L  + E  I I GHTD + 
Sbjct: 118 QVVREGEGI-IVKFDSGILFDIDKTALKPVAKTNIDQLSASLKKNPETNILIVGHTDNT- 175

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
               A  N  LS+ RA +     + +GV   R++   G         +  ++    NRR+
Sbjct: 176 --GTAAHNMDLSVRRAEAVKAYAIAAGVDASRLT-TQGKGDTEPIADNTTVDGRTQNRRV 232

Query: 335 DILV 338
           +I++
Sbjct: 233 EIVI 236


>gi|309787755|ref|ZP_07682366.1| inner membrane lipoyiaD domain protein [Shigella dysenteriae 1617]
 gi|308924505|gb|EFP70001.1| inner membrane lipoyiaD domain protein [Shigella dysenteriae 1617]
          Length = 147

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 11  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 69

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 70  PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 125

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 126 ASNSTAEGKAQNRRVEITL 144


>gi|257470656|ref|ZP_05634746.1| Outer membrane protein [Fusobacterium ulcerans ATCC 49185]
          Length = 217

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K    + ++ G  +++        F   SS  +      L  I  VL    E  I + G
Sbjct: 88  LKNTEVQVSQNGDNLNLN-LPGGVTFATDSSNIVSSFYGPLNSIATVLVQYPETRIIVNG 146

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329
           +TD     + + +   LS  RA S    L++ GVS  RIS +  G  + R   ++    +
Sbjct: 147 YTDN--VGSASYNV-SLSERRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 203

Query: 330 ANRRIDILVED 340
            NRR+++ +  
Sbjct: 204 ENRRVELEILP 214


>gi|188036026|pdb|2K1S|A Chain A, Solution Nmr Structure Of The Folded C-Terminal Fragment
           Of Yiad From Escherichia Coli. Northeast Structural
           Genomics Consortium Target Er553
          Length = 149

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 5   VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 63

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 64  PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 119

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 120 ASNSTAEGKAQNRRVEITL 138


>gi|332143465|ref|YP_004429203.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553487|gb|AEB00206.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 213

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDAS 275
            +  R G  + +I       F   S+   P    VLQ + +V+ +  + +  I+GHTD +
Sbjct: 86  VQVVREGDNLRLI-MPGDITFATDSASISPNFNPVLQDVAKVVNNYEKTVLMIKGHTDDT 144

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                 + N  LS  RA +   +L+   V+  RI+ + G   +  K+ ++     S NRR
Sbjct: 145 ---GSEQYNQSLSERRAGAVKNLLINYSVNPTRITTV-GMGEYSPKVPNNSAANRSMNRR 200

Query: 334 IDILVED 340
           +++ ++ 
Sbjct: 201 VEMEIQP 207


>gi|37521397|ref|NP_924774.1| outer membrane protein [Gloeobacter violaceus PCC 7421]
 gi|35212394|dbj|BAC89769.1| glr1828 [Gloeobacter violaceus PCC 7421]
          Length = 227

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 20/213 (9%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                + +R  E             +++  E   + P   E           +      S
Sbjct: 24  NPAPTTASRSGEPAVSTQPIGRSLVALDPSEVALMSPTGSETAADSAGGSATRSTQIAAS 83

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            T    V + I+     + T +GI++++       +FD   +   P   V LQK+ +V+ 
Sbjct: 84  ET---QVVNQILSDFNAQRTASGIVVTL---PEDILFDFDKADLRPSAQVALQKMAQVIN 137

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
                 I I GHTD+   +     N  LS  RA +    L  +  V+  R++   G    
Sbjct: 138 FYKNAPIEISGHTDS---KGADGYNRSLSERRAEAVRSYLANNFSVTTGRLTA-RGLGEG 193

Query: 319 RLKIAS-------DP-MNSANRRIDILVEDRQG 343
           +    +       DP     NRR++IL++++ G
Sbjct: 194 KPVAPNTKPDGSDDPAGRQKNRRVEILIKNQPG 226


>gi|330959642|gb|EGH59902.1| hypothetical protein PMA4326_13904 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 220

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L  +   L      +++I GHTD++   +   +N  LS  RA + 
Sbjct: 117 FATGSADLQPAAFQGLSAVANALKDQKDLMLNITGHTDST--GSRQFNNL-LSYARAQAV 173

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            Q L  +GV   ++  + G                + NRR++I +  +QG
Sbjct: 174 AQYLYAAGVPA-QVIAVRGVGPSMPVATDATSQGRAQNRRVEIQI--KQG 220


>gi|319778078|ref|YP_004134508.1| ompa/motb domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171797|gb|ADV15334.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 369

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA--SPFRNIARDNWRLSLDRAY 293
           F  +S+    ++  +L ++  V+       + + GHTD+  SP       N RLS  RA 
Sbjct: 264 FRTASARLDSQSRPLLAEVVGVVGKCPGLKVEVSGHTDSDGSPIE-----NKRLSERRAQ 318

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           +    ++ +G+   +I+  +G+   R    +D     + NRRI+
Sbjct: 319 AVADAIVAAGIPRTQIAA-TGYGEERPVADNDTPKNKALNRRIE 361


>gi|84503479|ref|ZP_01001534.1| OmpA family protein [Oceanicola batsensis HTCC2597]
 gi|84388157|gb|EAQ01110.1| OmpA family protein [Oceanicola batsensis HTCC2597]
          Length = 226

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +++++       +F   S+   P+    L  +   L    
Sbjct: 92  EAALRSELGSNVQIVNTGDRLVVTM---PQDILFATDSASLRPDLTTDLVTVARSLNEYP 148

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + GHTD +     A  N +LS  RA +   VL+ SGVS  RI    G    + + 
Sbjct: 149 RTTVQVVGHTDNT---GDAAYNQQLSARRASAVANVLINSGVSAGRIQS-FGRGEDQPRA 204

Query: 323 AS--DPMNSANRRIDILVED 340
            +        NRR+DI++  
Sbjct: 205 TNLTPEGRQLNRRVDIVILP 224


>gi|301047095|ref|ZP_07194195.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300300982|gb|EFJ57367.1| OmpA family protein [Escherichia coli MS 185-1]
          Length = 219

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANPLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALIPQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAEGKAQNRRVEITL 216


>gi|115373807|ref|ZP_01461100.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369206|gb|EAU68148.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 663

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 82/271 (30%), Gaps = 11/271 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P         + + D+      ++  +     D    ++S D    +          + +
Sbjct: 388 PLKDEDKDGVEDVADKCPQTPGAASAQGCPDQDGDGIQDSEDKCPAAAGNAAGQGCPDKD 447

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              + ++      +               +  +    +   N    P  K          
Sbjct: 448 GDGIDDASDRCPAEAGPAERQGCPIKDADNDGVLDEQDSCPNEAGLPELKGCPAKDADND 507

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            L D      +    +                   I I   +    FD ++S     +  
Sbjct: 508 TLADHLDNCPNEAGPVDNQGCPAKQKQLVAIRQDRIEI---KEAVYFDSNASTIQARSNG 564

Query: 251 VLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L ++ ++L    E++S  I GHTD    R  A  N  LS  RA +    L+K GV+ +R
Sbjct: 565 LLDQMAKLLNEHPEIVSVLIEGHTDD---RGAADYNRTLSKQRADTVRDYLVKKGVAAER 621

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           +    G+   R    +        NRR+D L
Sbjct: 622 LE-TQGYGPDRPVQPNTTAAGRTANRRVDFL 651


>gi|300779346|ref|ZP_07089204.1| proteobacterial sortase system OmpA family protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504856|gb|EFK35996.1| proteobacterial sortase system OmpA family protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 229

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   A+ I  TL G   + +  G+           SI++      F   SS       
Sbjct: 79  NKMDKQARDIKETLPGAQVERVGDGIKVTMNE-----SIVN------FAFDSSNLTSVAQ 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+ EVLA++ +  I+I GHTD+   +     N +LS  RA +    L   G++  R
Sbjct: 128 TNLDKLAEVLANNPDTNINIYGHTDS---KGSDDYNLKLSQRRADAVKAYLTGKGIASSR 184

Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
           +    G        ++D     + NRR++  +   +
Sbjct: 185 MF-TKGEGEAMPVASNDTEEGRAKNRRVEFAITANE 219


>gi|330829325|ref|YP_004392277.1| OmpA family protein [Aeromonas veronii B565]
 gi|328804461|gb|AEB49660.1| OmpA family protein [Aeromonas veronii B565]
          Length = 162

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   F  T  G  +   D  N  +F  +     P+T   ++K+G+ L     +   + 
Sbjct: 36  VLKEQGFYLTDEGWTL---DLANRVLFANNVGALNPQTRQSVEKLGKTLLGVGLDKARVD 92

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD +     +  N +LSL RA S   VL+  G+    +  I G         +     
Sbjct: 93  GHTDNT---GESSYNQQLSLKRAQSVADVLVSVGMKPANLE-IHGRGETMPLADNKTREG 148

Query: 328 NSANRRIDILVEDR 341
            +ANRR+ I++ D+
Sbjct: 149 RAANRRVAIVISDQ 162


>gi|146281506|ref|YP_001171659.1| OmpA family protein [Pseudomonas stutzeri A1501]
 gi|145569711|gb|ABP78817.1| OmpA family protein [Pseudomonas stutzeri A1501]
 gi|327479683|gb|AEA82993.1| OmpA family protein [Pseudomonas stutzeri DSM 4166]
          Length = 217

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             ++G   +  R G  +++I       F  +S+         L  + +V    +   + I
Sbjct: 88  QTLQGTGVQVQRNGDNLTLI-MPGNITFASNSADISSSFYPTLNSLVQVFKEFNKNGVDI 146

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD++      + N  LS  RA S    L+ +GV+  RIS   G    +   ++D   
Sbjct: 147 VGHTDST---GSLQLNQDLSNRRAQSVASYLIANGVAPARISS-YGAGPSQPIASNDTAA 202

Query: 327 MNSANRRIDI 336
             + NRR++I
Sbjct: 203 GRAQNRRVEI 212


>gi|183221257|ref|YP_001839253.1| OmpA domain-containing protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911348|ref|YP_001962903.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167776024|gb|ABZ94325.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779679|gb|ABZ97977.1| Putative outer membrane protein, OmpA domain; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 271

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 199 ISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIG 256
           +++    +  +   +G+ L ++ R G  +++    +  + F+   +    +    + K+ 
Sbjct: 128 LNTMYDNMAEEMKKQGITLTKSERGGETVALTATMDGGIAFEDGKADLKGKGKENVDKLA 187

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E LA   E  I+I GH + +        N RLS DRA +A   ++++GV   RI  + G 
Sbjct: 188 EALAAYPETKINITGHANRT---GAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGTVQGL 244

Query: 316 AHHRLKIASDPMNSANRRIDILVED 340
                    DP + +NRR+++ +  
Sbjct: 245 GSSTPMKNVDPKDGSNRRVEVEIVP 269


>gi|332296685|ref|YP_004438607.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332179788|gb|AEE15476.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 475

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268
           N       E T+ G+ +S+ D R    F   S+  L E    L  I ++L    + +  +
Sbjct: 350 NTASLFEIEDTQQGLRLSVRDIR----FRPDSAEILSEESWRLDAIADMLRSEPDAVYLV 405

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHT +       +   +LS++RA +    L+  G  +++    +G+   R    +    
Sbjct: 406 EGHTASVGKPEGEK---KLSVERAQAVVAALVSRGFRKEQFL-FTGYGGTRSVADNGTAA 461

Query: 327 MNSANRRIDILVED 340
             + NRR++I +  
Sbjct: 462 GRAENRRVEITILR 475


>gi|325294095|ref|YP_004279959.1| porin [Agrobacterium sp. H13-3]
 gi|325061948|gb|ADY65639.1| porin [Agrobacterium sp. H13-3]
          Length = 220

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I +    +   F       +P     L  +  VL        I I 
Sbjct: 91  LQGTGVSVTRRGDSIVLN-MPSNITFATDQDQVIPPFYQTLDSVAIVLNKF-NRTLIDIN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD++      + N  LS  RA S    L   GV + RIS + GF   +   ++     
Sbjct: 149 GHTDST---GSQQHNQALSERRAASVANYLGARGVDQRRISTL-GFGPSQPIASNATPDG 204

Query: 328 NSANRRIDILVEDRQG 343
            + NRR+++L+   +G
Sbjct: 205 RAQNRRVEVLISPLKG 220


>gi|311277523|ref|YP_003939754.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308746718|gb|ADO46470.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 220

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++G     TR+G  I I++  N   FD SS+   P     L  +  VL    +  +++
Sbjct: 90  QKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYEKTAVNV 148

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            G+TD++  +++   N RLS  RA S    L+  GV+ +RI + +G        ++    
Sbjct: 149 VGYTDSTGSKDL---NMRLSQQRADSVASSLITQGVAANRI-RTTGMGQANPIASNSTAE 204

Query: 329 --SANRRIDILVEDRQ 342
             + NRR++I +   Q
Sbjct: 205 GKAQNRRVEITLSPLQ 220


>gi|156936282|ref|YP_001440198.1| putative outer membrane lipoprotein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534536|gb|ABU79362.1| hypothetical protein ESA_04181 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR+G  I I++  N   FD S +   P     L  +  VL   
Sbjct: 83  VQEAKLRQKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSQANLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N +LS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 PKTAVNVVGYTDST---GGQALNMKLSQQRAESVASALITQGVAANRI-RTSGMGPANPV 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTEEGKAQNRRVEITLSPLQ 220


>gi|260060612|ref|YP_003193692.1| OmpA family protein [Robiginitalea biformata HTCC2501]
 gi|88784742|gb|EAR15911.1| OmpA family protein [Robiginitalea biformata HTCC2501]
          Length = 623

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 17/221 (7%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G     +   R  ++I+  + +Q+       ++      +D        + +++ +    
Sbjct: 377 GYFASNRPGGRGSDDIYGFTTTQKPGLKTLVVSGQVVSSEDAGVQQARVRLLDEADRVVR 436

Query: 176 PPLSKEK-----ILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGV-------LFETTRT 222
              +++       +  +   RL  D  +  S+ L G   D+I+ GV         +    
Sbjct: 437 ETYTRQNGAFRIEIPWQENMRLSIDKPRYTSAALGGPGQDSIISGVPARIALRSVDEVVR 496

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
            +      +     F + SS    E    LQ+  + L       I I  HTD+   R   
Sbjct: 497 SVRERQELKAEKFYFGRGSSRLTDEIRTALQEPLQALRDFPGLHIRIEAHTDS---RGSE 553

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           + N  LS  RA +    L+++G+  +RI  I GF   +L+ 
Sbjct: 554 QANLSLSRQRAEAIRDYLVENGIDAERIEGIEGFGESQLQN 594


>gi|239993109|ref|ZP_04713633.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Alteromonas macleodii ATCC 27126]
          Length = 213

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268
           N +     +  R G  + +I       F   SS   P    VLQ + +V+ +  + +  I
Sbjct: 79  NELSDTGVQVVREGDNLRLI-MPGDITFATDSSSISPNFNPVLQDVAKVVNNYEKTVLMI 137

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326
           +GHTD +      + N  LS  RA +   +L+   V+  RI+ + G   +  K+ ++   
Sbjct: 138 KGHTDDT---GSEQYNQSLSERRAGAVKNLLINYSVNPTRITTV-GMGEYAPKVPNNSAA 193

Query: 327 MNSANRRIDILVED 340
             S NRR+++ ++ 
Sbjct: 194 NRSMNRRVEMEIQP 207


>gi|157736518|ref|YP_001489201.1| OmpA domain-containing protein [Arcobacter butzleri RM4018]
 gi|315635678|ref|ZP_07890941.1| OmpA domain protein [Arcobacter butzleri JV22]
 gi|157698372|gb|ABV66532.1| OmpA domain protein [Arcobacter butzleri RM4018]
 gi|315479975|gb|EFU70645.1| OmpA domain protein [Arcobacter butzleri JV22]
          Length = 241

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 192 LQDLAKKISSTLSGLVADNIV------KGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +   A++++ +L+  V +N        + ++   T   + I   D     MF+ +S+ P 
Sbjct: 82  MDKQAQEVAQSLNTNVNNNPQAVLDPNQDLIVSNTDNYVKIMFRDSM---MFETNSANPT 138

Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
                 + KI  VL       + + GHTD+   R     N  LS  RA +   ++  SGV
Sbjct: 139 YSAQTKISKIYSVLQKYPNTLVQVVGHTDS---RGTHTYNQTLSEQRATNVGNIIYNSGV 195

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           S    S+   F        S+   + NRR+++ +   Q
Sbjct: 196 SNQIFSRGCSFDKPVALNNSESNMALNRRVEVYLYPNQ 233


>gi|262068028|ref|ZP_06027640.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693]
 gi|291378250|gb|EFE85768.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693]
          Length = 403

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE  V L+ +  VL  +      I GHTD+         N  
Sbjct: 292 LITLDSGILFDVDKYDVRPEAEVALKNLAVVLKEADVKAFQIDGHTDSDA---SDEHNQV 348

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           LS +RA +    L   G++ +    I+G+   R   ++D       NRR++I++
Sbjct: 349 LSENRANAVKSFLAAQGLTAE--ISINGYGESRPIASNDTAEGKQKNRRVEIII 400


>gi|152972417|ref|YP_001337563.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206578997|ref|YP_002236080.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|238897010|ref|YP_002921755.1| putative outer membrane lipoprotein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040618|ref|ZP_06013856.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|288933077|ref|YP_003437136.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|290511871|ref|ZP_06551239.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55]
 gi|329999890|ref|ZP_08303557.1| OmpA family protein [Klebsiella sp. MS 92-3]
 gi|150957266|gb|ABR79296.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206568055|gb|ACI09831.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|238549337|dbj|BAH65688.1| putative outer membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041982|gb|EEW43015.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|288887806|gb|ADC56124.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|289775661|gb|EFD83661.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55]
 gi|328538172|gb|EGF64327.1| OmpA family protein [Klebsiella sp. MS 92-3]
          Length = 220

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +S+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMQGTGVSVTRNGDNIVLN-MPNNVTFDSNSANLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  +++   N RLS  RA S    L+  GV+ +RI + +G       
Sbjct: 142 EKTAVNVVGYTDSTGSKDL---NMRLSQQRADSVASALITQGVAANRI-RTTGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220


>gi|261416894|ref|YP_003250577.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373350|gb|ACX76095.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326780|gb|ADL25981.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 774

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIARDN 284
           +++     F   S+        +L+ I + L          I I+GHTD    R  A+ N
Sbjct: 646 VEKLEGISFKSGSATVNANAKRILKGIAQKLKEDEAYKDLKIVIQGHTDN---RGKAKKN 702

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
            +LS  RA +  + L K GV+++RI  + G         +   +    NRRI+
Sbjct: 703 LKLSDRRAKAVMKQLTKFGVAKNRIKAV-GLGSTCPVDDNSTADGREMNRRIE 754


>gi|327405084|ref|YP_004345922.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320592|gb|AEA45084.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 681

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 97/256 (37%), Gaps = 18/256 (7%)

Query: 97  KIDLSIDEHITKNSVDLKIGS--TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
            I+ + DE     S D K+    + Q+  +     +++  +  +     K  L   + K 
Sbjct: 429 PINTAEDEIGIFVSTDGKLAYYSSQQQGNWDIYGFDLYEEARPKAVTIIKGDLKDPTGKP 488

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            +        +S +K E   +     +  + +K +K  QD+   +    +   +  I K 
Sbjct: 489 IENAIIEVAYESSDKVEQVRVNGNDGKYAVVVKTEKP-QDIMVSVKKDGAAFDSKLITKE 547

Query: 215 VLFETTRT--------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
            + +             + +      N  ++D +S     ++  +L++    L  +    
Sbjct: 548 EIVKKENRVNNNLEVKELKVGEAYTINDILYDYNSDFLSTKSKFILREFARFLKSNPTVK 607

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I ++GHTD+         N  LS  RA      L   G+  DR+    G+   + K+ +D
Sbjct: 608 IMVQGHTDSD---GDDAKNLDLSDRRAKGVKAYLQSQGIESDRLEA-KGYGETKPKVEND 663

Query: 326 -PMN-SANRRIDILVE 339
            P N + NRR D L++
Sbjct: 664 TPENKAKNRRTDFLIQ 679


>gi|194365341|ref|YP_002027951.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348145|gb|ACF51268.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 231

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I +    +   FD   +   P+    L  +   L    + +I + GHT
Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKATLKPQFYGSLNGVAGTLRDYNQTMIEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+    + A +N RLS +RA S  Q L+  GV   RI  + +G ++     ++D   + N
Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLVGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219

Query: 332 RRIDILVEDRQ 342
           RR++I V   +
Sbjct: 220 RRVEIRVIPLK 230


>gi|124002652|ref|ZP_01687504.1| OmpA/MotB [Microscilla marina ATCC 23134]
 gi|123991880|gb|EAY31267.1| OmpA/MotB [Microscilla marina ATCC 23134]
          Length = 352

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  S +     +  +L ++  +L    +  I + GHTD        + N  LS +RA
Sbjct: 236 KVLFAFSKAEIKTVSFSILDEVVRLLKKYPKSNIHLEGHTDNV---GKDQSNLILSKNRA 292

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
            S  Q  +  G++ +RI+ I G    R    +        NRR+D++
Sbjct: 293 ASVRQYFINKGINANRITSI-GHGEQRPIDTNTTAKGRQNNRRVDMV 338


>gi|78213752|ref|YP_382531.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Synechococcus sp. CC9605]
 gi|78198211|gb|ABB35976.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Synechococcus sp. CC9605]
          Length = 217

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +ID  +  +FD   S   P     L+   + +       + I GHTD+   +     N  
Sbjct: 97  LIDISSDILFDFDKSSLKPSAFPSLRIASKQITEMARGDVRIEGHTDS---KGADAYNQS 153

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--------MNSANRRIDILV 338
           LS  RA S  + L+++G   D    + GF   +    ++             NRR++I+V
Sbjct: 154 LSEARAESVRKWLVENGGLTDINFVVRGFGETKPIEPNETDKGEDNPAGRQRNRRVEIIV 213


>gi|269793616|ref|YP_003313071.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Sanguibacter keddieii DSM 10542]
 gi|269095801|gb|ACZ20237.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Sanguibacter keddieii DSM 10542]
          Length = 430

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281
           G  I++ D     +FD       PE+   L  +   LA +   +  I GHTD+    + A
Sbjct: 311 GTTITLSD---AALFDFGKHTLRPESQQTLDSLAAALAETGAPVLQIGGHTDS--ISDDA 365

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP-MNSANRR 333
             N  LS DRA +    L++ GV+     + +G+   +            +P     NRR
Sbjct: 366 F-NQTLSEDRAQAVADGLVERGVTAT--LETTGYGETQPVAPETTADGADNPAGRQLNRR 422

Query: 334 IDILV 338
           ++I V
Sbjct: 423 VEIFV 427


>gi|302326566|gb|ADL25767.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 215

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 10/192 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIV 212
            ++  K     ++I   +       S +       K+ ++    K+ ++    +   N +
Sbjct: 25  AENWEKRAATNRTIEAIQEQIGEARSGKVSDLEAEKQAIKAQKDKLEASKNEAMDKLNAL 84

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271
           +  + + T+    I +    +  +FD   +    + +  L KI  +L+ +    +SI G+
Sbjct: 85  QSQMIQVTKDARGIIL--SMSDILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGN 142

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD +        N  LS  RA +  + L++ G++E R++   G         +       
Sbjct: 143 TDNT---GSEEFNMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMTMPIADNSTKEGRQ 198

Query: 330 ANRRIDILVEDR 341
            NRR+D+++ DR
Sbjct: 199 KNRRVDLVITDR 210


>gi|4580969|gb|AAD24556.1|AF117964_1 OprF [Pseudomonas fuscovaginae]
          Length = 326

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + ++  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 221 FDFNKAVVKPNSYGDVKNLADFMKQYPQTTTVVSGHTDSV---GTDAYNQKLSQRRADAV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+K G++ +RI  +  +   R     A++   + NRR++  VE
Sbjct: 278 KQVLVKDGIAPNRIQSVV-YGKTRPVADNATEAGRAINRRVEASVE 322


>gi|291619700|ref|YP_003522442.1| Hypothetical Protein PANA_4147 [Pantoea ananatis LMG 20103]
 gi|291154730|gb|ADD79314.1| Hypothetical Protein PANA_4147 [Pantoea ananatis LMG 20103]
          Length = 595

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD   S      T +++  +  + A    +I + GHTD +      + N  
Sbjct: 457 IVRLDSMSLFDSGKSALKDGSTKMLVNSLVGIKAKPGWLIIVSGHTDNT---GNPQLNQA 513

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA +    +  +G   +    + G+   R   A+      + NRR++I +  +
Sbjct: 514 LSLKRAEAVRNWMRDTGGVPESCFAVQGYGESRPVAANGTPEGRALNRRVEISLVPQ 570


>gi|85375533|ref|YP_459595.1| outer membrane protein [Erythrobacter litoralis HTCC2594]
 gi|84788616|gb|ABC64798.1| outer membrane protein [Erythrobacter litoralis HTCC2594]
          Length = 231

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +  +    +  L       GV  E       I ++   +   F   S+         L +
Sbjct: 74  IGDQFDDQIRELDEQTAGSGVDVEEVGDQDAI-LVRLPDGVTFASGSARINSAFYPTLNE 132

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I E L       I + G TD +        N +LS  RA +    L+  GV+  RI    
Sbjct: 133 IAESLKRYPNSLIDVYGFTDTT---GSDALNQQLSESRAQTVADYLVARGVARSRI-ATQ 188

Query: 314 GFAHHRLK----IASDPMNSANRRIDILVED 340
           G+   R       A +     NRR++I +  
Sbjct: 189 GYGERREYLRIQTADNVNEPLNRRVEIKITP 219


>gi|315127968|ref|YP_004069971.1| lipoprotein [Pseudoalteromonas sp. SM9913]
 gi|315016482|gb|ADT69820.1| lipoprotein [Pseudoalteromonas sp. SM9913]
          Length = 210

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            E  R G  + ++   +   F    S         L  I  V+    +  +S+ GHTD++
Sbjct: 85  VEVVREGDNLRLV-MPSNITFATDQSYISSGFHDTLNAIASVMNKYEKTYLSVEGHTDST 143

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                   N  LS  RA S    L+   +   R+   SG+   R    +D  N  + NRR
Sbjct: 144 ---GKDSYNMTLSEQRAQSVKNYLVNQQIMAARV-STSGYGESRPIATNDTANGRAQNRR 199

Query: 334 IDI-LVEDRQG 343
           ++I +V + QG
Sbjct: 200 VEIQIVPNTQG 210


>gi|262281579|ref|ZP_06059357.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202]
 gi|262256955|gb|EEY75695.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202]
          Length = 159

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            ++K   F  T  G  + +       +FD +++         L ++   L       + I
Sbjct: 33  KLLKKEGFVLTNEGWTLGL---PERLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKI 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD       A  N +LS +RA S   + +  G  ++ I  + G    +  + +  + 
Sbjct: 90  VGHTDDV---GDAAYNQKLSEERAQSVANLFLARGFKQENIY-VIGRGSTQPYVPNTTNE 145

Query: 327 MNSANRRIDILVED 340
             + NRR+ I+V  
Sbjct: 146 NRAINRRVAIVVIP 159


>gi|260557560|ref|ZP_05829775.1| OmpA/MotB [Acinetobacter baumannii ATCC 19606]
 gi|260409186|gb|EEX02489.1| OmpA/MotB [Acinetobacter baumannii ATCC 19606]
          Length = 471

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVASAPETAEQSVSNSLSASQTALTAID-PN 351

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 462 NRRIEFSV 469


>gi|193076900|gb|ABO11623.2| OmpA/MotB [Acinetobacter baumannii ATCC 17978]
          Length = 471

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 462 NRRIEFSV 469


>gi|319778099|ref|YP_004134529.1| type IV / vi secretion system protein, dotu family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317171818|gb|ADV15355.1| type IV / VI secretion system protein, DotU family [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 440

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF--RNIARD 283
           I   N  +F  S          ++  + +V+         I++ GHTD+ P    N    
Sbjct: 321 IQASNPELFQSSRPQLTEGFEPLIGSLAKVILANQELIGNITVVGHTDSVPLQKTNPLST 380

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           N RLS  RA +   +L+++GV  DR+    G A              + NRR+++LVE R
Sbjct: 381 NQRLSEARAQTIADMLVQNGVPRDRVHS-EGRAATDPVATDSTREGRALNRRVEVLVEKR 439


>gi|325105621|ref|YP_004275275.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974469|gb|ADY53453.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 230

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   AK+I + + G            E    G  I I+   +  +FD + +       
Sbjct: 80  KKMDKQAKEIEAAIPGA-----------EVIPAGEGI-IVKFDSGLLFDFNKATLSATAK 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +  +   L    +  I + GHTDA      A +N +LSL+RA S     +  GVS  R
Sbjct: 128 QNIDNLAASLNKYPDTDILVVGHTDA--IGTDAVNN-KLSLERANSVVSYAISKGVSSGR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +   SG        ++D     + NRR++I++
Sbjct: 185 LKS-SGKGKTEPIASNDTDAGRAQNRRVEIVI 215


>gi|332969616|gb|EGK08634.1| OmpA family protein [Kingella kingae ATCC 23330]
          Length = 258

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +     E  R G  I +    N   F        P     L    + LA   E  I+I
Sbjct: 123 EQLANTGVEVERQGNQIKLTMPENVT-FATGRYDLSPAAQSALANAAQTLATYNETTITI 181

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GHTD++    I      LS +RA +    L + GV+ +R+  +SG    +     ++D 
Sbjct: 182 VGHTDSTGSDAINNP---LSYNRANAVASYLNQRGVAANRM-SVSGQGSRQPIADNSTDY 237

Query: 327 MNSANRRIDILV 338
             + NRR++IL+
Sbjct: 238 GRAQNRRVEILI 249


>gi|184157492|ref|YP_001845831.1| outer membrane protein [Acinetobacter baumannii ACICU]
 gi|332872459|ref|ZP_08440430.1| OmpA family protein [Acinetobacter baumannii 6014059]
 gi|183209086|gb|ACC56484.1| Outer membrane protein [Acinetobacter baumannii ACICU]
 gi|332739345|gb|EGJ70201.1| OmpA family protein [Acinetobacter baumannii 6014059]
          Length = 471

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 462 NRRIEFSV 469


>gi|347161|gb|AAC36903.1| protein F [Pseudomonas tolaasii]
          Length = 317

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+K G++ +R+S + G+   R     A++   + NRR++
Sbjct: 275 KQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315


>gi|58040218|ref|YP_192182.1| Outer membrane protein [Gluconobacter oxydans 621H]
 gi|58002632|gb|AAW61526.1| Outer membrane protein [Gluconobacter oxydans 621H]
          Length = 379

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   S        ++ +  +   H  T  I + G+TD   A P     + N  LS  R
Sbjct: 271 FFDWDKSDLTGRAREIVAQAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSNRR 330

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           A S    L++ GV    I  I G+   +  + + P      NRR++I+++
Sbjct: 331 ASSVKAELIRDGVPAAAID-IHGYGESKPLVPTGPNTREPQNRRVEIILK 379


>gi|239503512|ref|ZP_04662822.1| OmpA family protein [Acinetobacter baumannii AB900]
          Length = 471

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 462 NRRIEFSV 469


>gi|162451106|ref|YP_001613473.1| hypothetical protein sce2834 [Sorangium cellulosum 'So ce 56']
 gi|161161688|emb|CAN92993.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 634

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 76/258 (29%), Gaps = 8/258 (3%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P  R +             +N   ++    +       L                     
Sbjct: 381 PGARDACPYAHGPASADAKRNGCPVEDEDEDGVADQDDLCPRAAAGPGGGDPSRRGCPAD 440

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
           +D +   D   +   EK                +    +    L D A            
Sbjct: 441 QDGDGLPDALDACPAEKGDAAGGATRPGCPPAPRQPTDQDGDGLPDDADACPREKGPASG 500

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVI 266
           D    G        G  I +++     +     +   P++  VL ++ +V+        I
Sbjct: 501 DARASGCPTRVRVQGEQIVLLEPVVFRVLKNDPAPIDPKSEAVLAEVRDVIEQHPEWVKI 560

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324
            +  HTD       AR N  L+  RA +  + L+  G++ +R+    G+   +      S
Sbjct: 561 EVSAHTDG---AGNARFNETLTTARAEAVRRWLVGKGIAAERLVA-KGYGASQPISDDRS 616

Query: 325 DPMNSANRRIDILVEDRQ 342
                 NRR+ +LV +++
Sbjct: 617 AAGREKNRRVQLLVLEKR 634


>gi|150025962|ref|YP_001296788.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772503|emb|CAL43986.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 710

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           T+ G + +N    V  +  +      + D   T +F+ S S     T  VLQ I  +L  
Sbjct: 578 TVKGTIKNNGCPEVTADVMKK-----LNDYAKTILFEVSKSSFQQRTFPVLQSILAILKE 632

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                 SI GHTD+         N  LS  RA +    L+K+G+   R++   GF   + 
Sbjct: 633 YPVAKFSIEGHTDSD---GKDTANQTLSETRAAAVMAYLVKNGIDASRLAS-KGFGESKP 688

Query: 321 KIASDPMNSA--NRRIDILVED 340
              +        NRR+++ + +
Sbjct: 689 IATNKTKVGKILNRRVEVKLVN 710


>gi|119897129|ref|YP_932342.1| outer membrane protein [Azoarcus sp. BH72]
 gi|119669542|emb|CAL93455.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72]
          Length = 224

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+Q    ++    +G        GV    T     + + D  +   FD       PE  
Sbjct: 79  QRMQAQKAEMERATAGT-------GVSVSQTADN-RLKL-DIPSDVSFDTGRYDIKPEMR 129

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL +    L   T   +SI GHTD++    +      LS++RA +    L+  GV+  R
Sbjct: 130 PVLDRFANTLNQHTVTTVSIIGHTDSTGSDAVNNP---LSVNRAAATRDYLVARGVAGSR 186

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I  I G         +      + NRR++I V
Sbjct: 187 I-AIDGRGAREPIADNGTVAGRAQNRRVEIFV 217


>gi|298206796|ref|YP_003714975.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
 gi|83849428|gb|EAP87296.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
          Length = 630

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           +     ++ + T     I +     T  FD   +   P+   VL K  +++    + VI+
Sbjct: 497 ERAKDMIVVDETTKQEKIDL----ETIYFDFDKADITPKAAAVLDKAVKLMNFYPDMVIN 552

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---- 323
           I  HTD+   R   + N+ LS  RA +  Q +   G++E+RI    G+   RL       
Sbjct: 553 IESHTDS---RGSKKYNYSLSDRRAKATQQYIYSQGIAEERIVSAQGYGEQRLLNECKDG 609

Query: 324 ---SDPMNSANRRIDILVEDR 341
              SD  +  NRR D ++  R
Sbjct: 610 VKCSDEEHDVNRRSDFIILKR 630


>gi|253582159|ref|ZP_04859382.1| outer membrane protein OmpF [Fusobacterium varium ATCC 27725]
 gi|251835698|gb|EES64236.1| outer membrane protein OmpF [Fusobacterium varium ATCC 27725]
          Length = 186

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 11/166 (6%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           KE ++     + + +       TL  ++  N  KGV        +++S+       +FD 
Sbjct: 28  KELVIEETENEFIMEDIDVSKKTLEEIIVFN-EKGVTIRREGNNLVLSM---PELVLFDF 83

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           +      +    L  + + L  + +  I I G+TD   F      N  LS+ RA +    
Sbjct: 84  NKYEVKNKVKGSLNALAKALEENPDIRIKIDGYTD---FIGSEGYNLELSVKRANAIKDY 140

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           L   GV    I  I G+       ++  +   + NRR++ ++   +
Sbjct: 141 LTNRGVKPSNI-SIEGYGKQNPIASNQTETGRAKNRRVEFIISRDK 185


>gi|298372474|ref|ZP_06982464.1| OmpA family outer membrane protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275378|gb|EFI16929.1| OmpA family outer membrane protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 633

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + ++       V  +  ++G  I++    N   F  +S    P++   + ++   L  + 
Sbjct: 503 AKIITSKNTLNVYLQPIKSGNKITL----NNIFFAFNSYELEPKSEREIMQLYSFLRKNP 558

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +V I I GHTD          N  LS +RA +    L++ G+   R+    G    +   
Sbjct: 559 DVSIEIVGHTDNI---GGENFNQTLSENRALAVMMALIEKGIDAGRLY-YRGMGLSQPIA 614

Query: 323 ASDPMNSA--NRRIDILVE 339
           +++       NRR++ +++
Sbjct: 615 SNNTEEGREKNRRVEFVIK 633


>gi|94263332|ref|ZP_01287147.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456287|gb|EAT06417.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 272

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 52/207 (25%)

Query: 179 SKEKILAMKRKKRLQDLAK--KISSTLSGL--VADNIVKGVLFETTRTGILIS------- 227
            K K   ++R++ L++  +   I   L+ +  V D++++ +  +  + G+ +        
Sbjct: 47  QKSKQAEIERQELLREQKRYSLIVDDLTNIGHVRDSLLEDIGSKLRQLGVQVETDLEHGI 106

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---------------------EVI 266
           +        F    +I   E +  L K+G+VL  +                      E +
Sbjct: 107 VHLTEQAINFPSGQAILPEEELAKLAKVGDVLVDTLPCYTADPPAYLNCSPEHAGKLESV 166

Query: 267 SIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLM------------KSGVSEDRISK 311
            I GHTD  P R+ +R   DNW LS  RA  AY+ ++             +G     I  
Sbjct: 167 FIEGHTDNVPLRDGSRKFQDNWDLSAQRAIFAYRSMVIGEQPLLGQLTNTAGFP---IFS 223

Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDI 336
           +SG+   R +    +   ++ANRRID+
Sbjct: 224 VSGYGEGRPRNRYEAPTADAANRRIDL 250


>gi|254524462|ref|ZP_05136517.1| outer membrane protein [Stenotrophomonas sp. SKA14]
 gi|219722053|gb|EED40578.1| outer membrane protein [Stenotrophomonas sp. SKA14]
          Length = 231

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I +    +   FD   +   P+    L  +   L    + +I + GHT
Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKATLKPQFYGSLNGVAGTLRDYNQTMIEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+    + A +N RLS +RA S  Q L+  GV   RI  + +G ++     ++D   + N
Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLIGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219

Query: 332 RRIDILVEDRQ 342
           RR++I V   +
Sbjct: 220 RRVEIRVIPLK 230


>gi|154250728|ref|YP_001411552.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154678|gb|ABS61895.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 224

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              TR G  I I++      F  +SS    +   VL  +  VL    +  I + GHTD++
Sbjct: 99  VSVTRVGNDI-ILNMPGNVTFATNSSDINAKFYDVLNSVAIVLKEYDKTLIDVTGHTDST 157

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                 + N  LS  RA S    L+   V   R   I G    +    +D       NRR
Sbjct: 158 ---GSDQYNLELSQKRAQSVASYLIGQSVDSRRFY-IVGAGESQPIATNDTPQGREQNRR 213

Query: 334 IDI 336
           ++I
Sbjct: 214 VEI 216


>gi|257091687|ref|YP_003165328.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044211|gb|ACV33399.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 202

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P +   L +I ++L+ + +  I + GHTDA      A  N  LS DRA S 
Sbjct: 100 FRPGSANITPASGNTLIEIAKILSLTPDRCIIVEGHTDAE---GNADRNMALSRDRANSV 156

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            + +   G  E R     G          DP +S NRR+
Sbjct: 157 VKFISDKGAVERRRLVPVGKGSTDPLKDLDPRDSRNRRV 195


>gi|298208747|ref|YP_003716926.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
 gi|83848674|gb|EAP86543.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
          Length = 233

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   A+KI   + G            E    GI+++  D+ +   FD + S    ++ 
Sbjct: 78  NKMDKQAQKIEQEIPGA---------QVERIDDGIVVT-FDENSGVYFDTNKSNINAKSQ 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  VL       + + GHTD++     A  N  LS DRA S        G+S  R
Sbjct: 128 ETLDKLSNVLVEYPNTDVLVVGHTDST---GSAEYNMSLSRDRANSVTNYFTSKGLSSGR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +    F   +    +D     + NRR+ + +   +
Sbjct: 185 FT-TKWFGETKPAYTNDTAEGRAKNRRVQLAILPNE 219


>gi|88798412|ref|ZP_01113997.1| OmpA/MotB [Reinekea sp. MED297]
 gi|88778852|gb|EAR10042.1| OmpA/MotB [Reinekea sp. MED297]
          Length = 373

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     + V LQ+    L    +  I I  HTD++   + A  N  LS  RA + 
Sbjct: 255 FAVDSAQLNDTSRVRLQEAANTLRQFPDINIQIEAHTDST--ASEAY-NLSLSDQRAQAI 311

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L++ G+ E R++  +G+   + + +++       NRR++
Sbjct: 312 RDYLIELGIDEQRLTA-TGYGESQPRASNESEEGRSLNRRVE 352


>gi|86609769|ref|YP_478531.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558311|gb|ABD03268.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 243

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
              Q       I       Q+     S T D++  ++    TDLE  I +     +  L 
Sbjct: 18  SPTQPASPTPPILPTLAPPQANPPVASPTADADPEENHESPTDLEAEIREIRQQVIQLLI 77

Query: 180 KEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           + + L  + ++     A    ++ S+    +  +          T   +    I      
Sbjct: 78  RIEELESRLQRLRSQTAPEPVRESSTAAEIVPGEESTPAPTKTLTSFQVGTQTISLPGDL 137

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +   PE   +L ++ + L       + + GHTD          N  LSL RA +
Sbjct: 138 LFDFDKAEIRPEAASLLAQVAKSLEAMPGARVQVNGHTDNI---GPLNYNLALSLRRANA 194

Query: 295 AYQVLMKSGVSEDRISK--ISGFAHHRLKIASDPM--NSANRRIDILV 338
               L K  + E        SGF        +D       NRR+D+++
Sbjct: 195 VKDYLTKL-LPEGHPISWTTSGFGPTLPVADNDTEAGRQRNRRVDLVI 241


>gi|116748592|ref|YP_845279.1| OmpA/MotB domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697656|gb|ABK16844.1| OmpA/MotB domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 182

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   P+    +  + EVLA      I + G TD +   +   D+  ++  RA +
Sbjct: 78  LFPDDSTELKPDAPARIAPVAEVLAKYPATSIKVDGFTDRT--GSEKYDH-EITESRATA 134

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              VL+  G+   RI +  GF   +     A+D     NRR+ I +
Sbjct: 135 VRDVLVGKGIDPARI-RARGFGDSKPLTTNATDEGRRTNRRVTITI 179


>gi|221640398|ref|YP_002526660.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161179|gb|ACM02159.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 310

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L  + + L       + I GHTDA         N  LS  RA S 
Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339
            + L+   GV   +++    G+   R    ++   + NRR+++++ 
Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308


>gi|257453597|ref|ZP_05618887.1| OmpA/MotB [Enhydrobacter aerosaccus SK60]
 gi|257449055|gb|EEV24008.1| OmpA/MotB [Enhydrobacter aerosaccus SK60]
          Length = 385

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279
              + + +        FD   ++   +    +QK+ E +        SI GH  AS    
Sbjct: 255 DDALRMEL-----RVFFDNDKTVIKDQYKPEIQKVAEKMNEYPNSTASIEGH--ASKTGP 307

Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI-D 335
            AR N RLS  RA +   +L+   GV+  RIS + G+ + R    ++     + NRR+  
Sbjct: 308 SARYNQRLSEARANAVKSMLVNQFGVAPQRISTV-GYGYDRPIADNNTAEGRAMNRRVYA 366

Query: 336 ILVEDRQG 343
           I+  ++ G
Sbjct: 367 IITGNKSG 374


>gi|260642406|ref|ZP_05415772.2| lipoprotein PG3 [Bacteroides finegoldii DSM 17565]
 gi|260622249|gb|EEX45120.1| lipoprotein PG3 [Bacteroides finegoldii DSM 17565]
          Length = 260

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 88  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLKAVKVTFDSGI-----------LFT 136

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291
             ++   P     L K    VL  + +  +SI G+TD   +RN   +     N  LS +R
Sbjct: 137 TGNASLSPAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 196

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 197 AQSVASYLLNCGVSSNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 243


>gi|296534445|ref|ZP_06896882.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957]
 gi|296265230|gb|EFH11418.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957]
          Length = 143

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 5   GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64
             +++     I+++++    D  ++ G+WKI YADF+T +MAFFL+MW+INAT D  +  
Sbjct: 2   AKRDKNQRTVIVVRREEGGGDGGHHGGAWKIAYADFVTAMMAFFLLMWLINATSDAQRVG 61

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           +  YF P    L     G  +       +S N +       + +  +     +   + + 
Sbjct: 62  LADYFAPTNV-LSRGPSGAGEPFGGRTINSTNTLAGETPPAMGERPMSPLPWTREDRPED 120

Query: 125 QRLENNIFYLSN 136
           +  +        
Sbjct: 121 EPDDPPAEPQPP 132


>gi|326561460|gb|EGE11810.1| outer membrane protein CD [Moraxella catarrhalis 46P47B1]
 gi|326562231|gb|EGE12559.1| outer membrane protein CD [Moraxella catarrhalis 7169]
 gi|326567185|gb|EGE17307.1| outer membrane protein CD [Moraxella catarrhalis BC1]
 gi|326568467|gb|EGE18547.1| outer membrane protein CD [Moraxella catarrhalis BC7]
 gi|326572021|gb|EGE22023.1| outer membrane protein CD [Moraxella catarrhalis BC8]
 gi|326574959|gb|EGE24889.1| outer membrane protein CD [Moraxella catarrhalis 101P30B1]
          Length = 453

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L+  + Q     FD   SI  P+    + K+   +        +I GH      R+ AR 
Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           N RLS  RA +   +L    G++ +R++ + G+   R    +      + NRR++ ++
Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436


>gi|126463345|ref|YP_001044459.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105009|gb|ABN77687.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 310

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L  + + L       + I GHTDA         N  LS  RA S 
Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339
            + L+   GV   +++    G+   R    ++   + NRR+++++ 
Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308


>gi|77464505|ref|YP_354009.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388923|gb|ABA80108.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1]
          Length = 310

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L  + + L       + I GHTDA         N  LS  RA S 
Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339
            + L+   GV   +++    G+   R    ++   + NRR+++++ 
Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308


>gi|222054259|ref|YP_002536621.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563548|gb|ACM19520.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 242

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E  R G  +  +   +  +FD             L K    L  S   I ++GHTD++  
Sbjct: 111 EVVRDGDKV-YVALPSGILFDLGKDALKSGAKESLSKAAATLKASETNIVVQGHTDST-- 167

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N  LS  RA      L  +GV   R++ + G+   R  +A+D     + NRR+ 
Sbjct: 168 -GSDAINQPLSERRAKQVRDFLTANGVPAFRLTAV-GYGSSRPAVANDTDANRALNRRVQ 225

Query: 336 ILVEDRQ 342
           + +   +
Sbjct: 226 LEISPNE 232


>gi|217032506|ref|ZP_03437997.1| hypothetical protein HPB128_180g5 [Helicobacter pylori B128]
 gi|216945784|gb|EEC24407.1| hypothetical protein HPB128_180g5 [Helicobacter pylori B128]
          Length = 247

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            +++   S +        +D       N R++I   +R
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIFFSNR 235



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|146279022|ref|YP_001169181.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557263|gb|ABP71876.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 316

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     T   L ++ E L       + I GHTDA         N  LS  RA S 
Sbjct: 212 FASGSADLEDRTYPALAELAEWLKQDPARQVVIVGHTDA---SGGLEGNVSLSRARAASV 268

Query: 296 YQVLM-KSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339
            Q L+ + GV + ++S    G+   R    ++   S NRR+++++ 
Sbjct: 269 RQRLVSRHGVPDAQVSAEGVGYLAPRASNRTEEGRSRNRRVEVMLL 314


>gi|296113910|ref|YP_003627848.1| outer membrane protein CD [Moraxella catarrhalis RH4]
 gi|149757|gb|AAA66180.1| outer membrane protein CD [Moraxella catarrhalis]
 gi|45685720|gb|AAS75593.1| OmpCD [Moraxella catarrhalis O35E]
 gi|295921604|gb|ADG61955.1| outer membrane protein CD [Moraxella catarrhalis RH4]
 gi|326560587|gb|EGE10968.1| outer membrane protein CD [Moraxella catarrhalis 103P14B1]
 gi|326573968|gb|EGE23918.1| outer membrane protein CD [Moraxella catarrhalis O35E]
          Length = 453

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L+  + Q     FD   SI  P+    + K+   +        +I GH      R+ AR 
Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           N RLS  RA +   +L    G++ +R++ + G+   R    +      + NRR++ ++
Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436


>gi|255033902|ref|YP_003084523.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254946658|gb|ACT91358.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 638

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F     I   ++ V L K+ + L  + T  I I GHTD         +N  LS  R
Sbjct: 533 NNIFFKTGEYILDDKSKVELDKMSDFLHKNKTIKIEISGHTDDV---GSDTENMALSQRR 589

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
           A S    L +SG++ DRI    G+     K  +  D     NRRI+
Sbjct: 590 AQSVQYYLQQSGIAADRILA-KGYGETTPKAPNDSDENRQKNRRIE 634


>gi|118419991|gb|ABK88265.1| outer membrane protein CD [Moraxella catarrhalis]
          Length = 427

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L+  + Q     FD   SI  P+    + K+   +        +I GH      R+ AR 
Sbjct: 294 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 353

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           N RLS  RA +   +L    G++ +R++ + G+   R    +      + NRR++ ++
Sbjct: 354 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 410


>gi|326576289|gb|EGE26204.1| outer membrane protein CD [Moraxella catarrhalis CO72]
          Length = 453

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L+  + Q     FD   SI  P+    + K+   +        +I GH      R+ AR 
Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           N RLS  RA +   +L    G++ +R++ + G+   R    +      + NRR++ ++
Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436


>gi|229592593|ref|YP_002874712.1| putative lipoprotein [Pseudomonas fluorescens SBW25]
 gi|229364459|emb|CAY52284.1| putative putative lipoprotein [Pseudomonas fluorescens SBW25]
          Length = 163

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   FE T  G            +F          +  ++Q+IG+ L     E + I 
Sbjct: 37  VLKQQGFELTDEGWA---FGLSGKVLFGSDVEALNQPSTDIVQRIGKALLGVGIERVRID 93

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA         N +LSL RA S   VLM  G+ E+ I ++ G        ++D    
Sbjct: 94  GHTDA---SGKETYNQQLSLRRAKSVATVLMSVGMKEENI-QLRGLGSSEPVASNDTAAG 149

Query: 330 A--NRRIDILVED 340
              NRR+ I+V  
Sbjct: 150 RTENRRVSIVVMS 162


>gi|326565587|gb|EGE15750.1| outer membrane protein CD [Moraxella catarrhalis 12P80B1]
          Length = 449

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           L+  + Q     FD   SI  P+    + K+   +        +I GH      R+ AR 
Sbjct: 316 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 375

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           N RLS  RA +   +L    G++ +R++ + G+   R    +      + NRR++ ++
Sbjct: 376 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 432


>gi|162456349|ref|YP_001618716.1| exported OmpA domain-containing protein [Sorangium cellulosum 'So
           ce 56']
 gi|161166931|emb|CAN98236.1| exported OmpA domain protein [Sorangium cellulosum 'So ce 56']
          Length = 610

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 87/307 (28%), Gaps = 24/307 (7%)

Query: 39  DFMTVLMAFFLVMWIINATDDDTKKAIEQYFN--PFGKNLMTASKGIFDEQNPPERSSQN 96
           D   V MA F          D  +  I    +  P    + +          PP+R +  
Sbjct: 296 DVRAVAMAAF----TPEQPTDQDRDGIGDLEDACPSVPGVRSGDPKKNGCPPPPDRDADG 351

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS---QQSEHCKNSLTRDSEK 153
            +D                          R  + I    ++          +        
Sbjct: 352 IVDAEDACPAVAGVRSDDPKKNGCPPPPDRDADGIVDAEDACPAVAGVRSDDPKKNGCPP 411

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--ISSTLSGLVADNI 211
            +D     D E +    +       +K            +D           +    +  
Sbjct: 412 DRDDDGVADAEDACPDVKGVRSKDPAKNGCPRDTDGDTFRDDVDACPREKGFADPDPEKN 471

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIR 269
                   T   ++I          FD   +   P +  +L ++ EVL       +I I+
Sbjct: 472 GCPKAVRVTEKHVVIL-----QQVQFDTDKATIKPVSDPLLDEVAEVLKEHPEIVLIEIQ 526

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327
           GHTD    R     N  LS +RA S    L++ G+   R++   G+   +     A++  
Sbjct: 527 GHTDN---RGTVEHNRILSQNRANSVMAALVRRGIDSTRLTA-QGYGREQPIDDNATEAG 582

Query: 328 NSANRRI 334
              NRR+
Sbjct: 583 RQRNRRV 589


>gi|300697371|ref|YP_003748032.1| outer membrane protein; OmpA/MotB domain [Ralstonia solanacearum
           CFBP2957]
 gi|299074095|emb|CBJ53637.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia
           solanacearum CFBP2957]
          Length = 279

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 19/254 (7%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P   +      S+   +    +     +        R       + +  +  +  +  
Sbjct: 34  GAPGDPAPATAANSVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 93

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204
                  K L              +     +  +     +R++   D+A  + ++ +   
Sbjct: 94  NWTGNVQKILSPQIKQVNRGQLNIDGTQVAVHGDVQNEAQRQQLASDMATTLGASYTIKN 153

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           GL    + +  L + T    +I          F+  S+   P+   +L ++  VL     
Sbjct: 154 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 204

Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I I GHTD          N  LS  RA +    L+  G     ++ I G    +   A
Sbjct: 205 RKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLINKGAEPGTLTAI-GVGPDQPVAA 260

Query: 324 S--DPMNSANRRID 335
           +  D   S NRRI+
Sbjct: 261 NTTDEGRSRNRRIE 274


>gi|294012887|ref|YP_003546347.1| OmpA-family protein [Sphingobium japonicum UT26S]
 gi|292676217|dbj|BAI97735.1| OmpA-family protein [Sphingobium japonicum UT26S]
          Length = 226

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239
           + +K L      ++    G   D   + +  ET  +G+ + I D  N  +       F  
Sbjct: 60  RTEKILGAGIGAVAGAGIGAYMDAQERKLREETAGSGVDV-IRDGDNLVLRMPSGITFAT 118

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            SS   P+    L  +  VLA   +  I + GHTD+         N  LS  RA +    
Sbjct: 119 DSSAVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDS---DGTDTYNQALSERRAQAVGDY 175

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           L   GV   RI    GF   +   ++      ++NRR++I +
Sbjct: 176 LTTHGVQSARI-ATRGFGETQPIASNATAEGKASNRRVEIKI 216


>gi|146306455|ref|YP_001186920.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574656|gb|ABP84188.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 244

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275
            E      +I + D  N  +F   S+    E   +L  +   L  ++   + + GHTD+ 
Sbjct: 123 MEPVAQDEVIVLSDLGN-VLFAFDSAELTAEARRLLTDVSARLTGASLVSVKVVGHTDSV 181

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRR 333
                   N  LS  RA S    L+  GV   ++    G    +    +  D   + NRR
Sbjct: 182 ---GSDAYNQGLSERRARSVADFLVAQGVPAGKL-STEGRGESQPVADNGSDAGRAQNRR 237

Query: 334 IDILV 338
           +++ V
Sbjct: 238 VELYV 242


>gi|193076988|gb|ABO11733.2| putative outer membrane lipoprotein [Acinetobacter baumannii ATCC
           17978]
          Length = 255

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S++       +L ++   L       + I GHTD+      A  N +LS DRA + 
Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDANKNLKLSQDRALAV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
              L+   +  D +    G    +    +        NRRI+  V 
Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255


>gi|254302309|ref|ZP_04969667.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322501|gb|EDK87751.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 189

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S   PE   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 60  TIVLDERALNFDFDKSNVKPEYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 116

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G++EDRI  I      +    ++     + NRR++  +  R+
Sbjct: 117 LSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 174


>gi|83748126|ref|ZP_00945154.1| Hypothetical Protein RRSL_01752 [Ralstonia solanacearum UW551]
 gi|207739125|ref|YP_002257518.1| outer membrane protein [Ralstonia solanacearum IPO1609]
 gi|83725208|gb|EAP72358.1| Hypothetical Protein RRSL_01752 [Ralstonia solanacearum UW551]
 gi|206592498|emb|CAQ59404.1| outer membrane protein [Ralstonia solanacearum IPO1609]
          Length = 277

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 10/277 (3%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
             AI+  F P    L   +  +              +  + +    +      +     K
Sbjct: 3   LDAIKHGFRPAILALAATAACLGAALPAYGAPGDPALATTANPVPGQVVAGGMVPDEATK 62

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                    ++  +N        N ++  +  G      +   K +N+ +          
Sbjct: 63  ASVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVNRGQLNIDGTQVAV 122

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
                   +R Q LA  +++TL       I  G+         L+          F+  S
Sbjct: 123 HGDVQNEAQR-QQLASDMATTLGASYT--IKNGLRVAAVSEQSLLDQTLANRIIEFETGS 179

Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   P+   +L ++  VL       I I GHTD          N  LS  RA +    L+
Sbjct: 180 ATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLI 236

Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             G     ++ I G    +   A+  D   S NRRI+
Sbjct: 237 NKGAEPGTLTAI-GVGPDQPVAANTTDEGRSRNRRIE 272


>gi|332668211|ref|YP_004450999.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332337025|gb|AEE54126.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 317

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +    GI I   ++ +   F+   S  +     +L     +L ++ E    I GHTD  
Sbjct: 197 IQQDGEGIKIRFSEKVS---FETGKSELVAAADSILAITVRMLNYNPEAKCRIEGHTDDV 253

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                A+DN  LS  RA +    L   G+      ++ G+   +   ++        NRR
Sbjct: 254 ---GNAKDNLLLSQSRAKAVATALKNRGIPTSVQLEVKGYGSTKPVASNSSAEGKSLNRR 310

Query: 334 IDILVE 339
           +DI++E
Sbjct: 311 VDIVIE 316


>gi|237738475|ref|ZP_04568956.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817]
 gi|229420355|gb|EEO35402.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817]
          Length = 185

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 11/166 (6%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           KE  +     + + +        L  ++  N  +GV+       +++S+       +FD 
Sbjct: 25  KEITIKESETQYILEDVTTTEKPLEDIIVFN-EEGVVIRKDGNNLVLSM---PVEILFDF 80

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            SS         L  +G+ LA + +  + I GHTD   +    + N  LSL RA S    
Sbjct: 81  DSSKVKEGVKESLNTLGKALAENKDIKLKIDGHTD---YIGTEQYNLNLSLKRANSIKNY 137

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           L+  GVS + I  I G+        +  +   + NRR++ ++   +
Sbjct: 138 LIGRGVSANNI-SIEGYGKQNPVANNSTEAGRAKNRRVEFIISRDK 182


>gi|311747916|ref|ZP_07721701.1| OmpA family protein [Algoriphagus sp. PR1]
 gi|126575910|gb|EAZ80220.1| OmpA family protein [Algoriphagus sp. PR1]
          Length = 225

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +  ++      L  D  ++G   E    GI I+     +  MFD   +     +   L +
Sbjct: 70  IGNEMDKAAEELQRD--LEGATVERVGEGIKITF---DSGLMFDVDKATLNSNSRDNLME 124

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           + E L    E  I + GHTDA+        N  LS  RAYS    L   G+ + R+  I+
Sbjct: 125 LSETLKKYDETNILVEGHTDAT---GSDDYNLDLSRKRAYSVEDYLTNLGIQKSRLE-IT 180

Query: 314 GFAHHRLKIASDPMNSA--NRRIDILV 338
            +  ++    ++       NRR+++ +
Sbjct: 181 AYGENQPIATNETEAGRQQNRRVEVAI 207


>gi|27804808|gb|AAO22853.1| outer membrane protein A-like protein [Myxococcus xanthus]
          Length = 241

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273
           L E     +++          F+ + +     +  +L  +  V+    E+  + +  HTD
Sbjct: 111 LVEIRPDRLVV-----MGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTD 165

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
               R    DN RLS  RA +  Q L+   ++ +R+  + G+   R   ++   N    N
Sbjct: 166 D---RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENN 221

Query: 332 RRIDILVEDRQ 342
           RR++ L+ D Q
Sbjct: 222 RRVEFLLADPQ 232


>gi|77457447|ref|YP_346952.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77381450|gb|ABA72963.1| putative outer membrane protein A precursor [Pseudomonas
           fluorescens Pf0-1]
          Length = 231

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283
           I I D      F    +   P   +VL K+   L    ST  +++ GHTD+         
Sbjct: 120 IVIRDVH----FQFDKATLTPADKLVLDKVASRLKQESSTAQLTVTGHTDSV---GSDAY 172

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           N +LS  RA+S  + L++SGV +     ++G    +    +      + NRR +I +
Sbjct: 173 NQKLSDRRAHSVVKYLVESGVPQSSFVSVTGAGESQPVADNKTADGRALNRRTEIKI 229


>gi|327396585|dbj|BAK14006.1| putative OmpA-family membrane protein [Pantoea ananatis AJ13355]
          Length = 353

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           +I+   +  +FD   S      T +++  +  + A    +I + GHTD +      + N 
Sbjct: 214 TIVRLDSMSLFDSGKSALKDGSTKMLVNSLVGIKAKPGWLIIVSGHTDNT---GNPQLNQ 270

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA +    +  +G   +    + G+   R   A+      + NRR++I +  +
Sbjct: 271 ALSLKRAEAVRNWMRDTGGVPESCFAVQGYGESRPVAANGTPEGRALNRRVEISLVPQ 328


>gi|325300740|ref|YP_004260656.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324320293|gb|ADY38183.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 209

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             + +K++ + + KK+    + L     +     + T  G  I     +N  +F   S  
Sbjct: 53  AELIKKEQEKAINKKLLERENKLKNIPGLVVTTIDET-NGKKIFKATMQNEILFKFDSHE 111

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
                  +L ++  ++       I + GHTD          N  LS +RA +    L  +
Sbjct: 112 LNKNAKSILDEMIGIINEIPNTKIKVIGHTDN--IGEKGY-NILLSQNRAAAVGNYLRNA 168

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           G+    I++  G           ++   + NRR++I + +
Sbjct: 169 GIETKNITE-EGKGFDEPVSSNKTEAGRAKNRRVEIFLSN 207


>gi|269119617|ref|YP_003307794.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613495|gb|ACZ07863.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 179

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++++   +I++     V +      + +     +   I    N   FD   S   PE  
Sbjct: 24  KQMRNDTIRINALEVEFVEEKAAVQEVKQNGSGEVKKIIRLNENKLYFDFDDSRIKPEYY 83

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L+++ E +      + IRG+TD+        +N RLS  RA S    L++ G+   R+
Sbjct: 84  GLLREMVEEIKAMDSDVIIRGYTDSK--GTDEYNN-RLSQRRAESVRDKLIEFGLESGRV 140

Query: 310 SKISGFAHHRLKIAS-------DP-MNSANRRIDI 336
            K  G         +       +P   + NRRI++
Sbjct: 141 LKTEGMGERNPIAPNTNKDGSDNPAGRALNRRIEL 175


>gi|325954634|ref|YP_004238294.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437252|gb|ADX67716.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 234

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +   A+KI   L G              T  GI + I+++ ++  FD +S     +  
Sbjct: 81  QHMDKQAEKIEQVLPGA---------EVVRTDEGINL-ILNENSSVTFDYNSENLTSKAK 130

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+ +V     +  + I GHTD          N  LS  RA S    L+  G+S  R
Sbjct: 131 NSLDKLIQVFKEYPDTNLLIVGHTDNV---GSQNFNLPLSEKRAKSVVNYLVSKGISSSR 187

Query: 309 I-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           + SK  G +      ++    + NRR++I +   +
Sbjct: 188 LTSKGVGLSEPIADNSTAAGRAQNRRVEIAITANE 222


>gi|238023632|ref|YP_002907864.1| outer membrane protein [Burkholderia glumae BGR1]
 gi|237878297|gb|ACR30629.1| Outer membrane protein [Burkholderia glumae BGR1]
          Length = 569

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +++   +     ++ ++      + R  +L +  +  +   +   + +G         + 
Sbjct: 384 ALDAYRDTPALDIAAKRAAVGALRARFAELERYANQGVPTGLGWGLYRGAPL---HEAVR 440

Query: 226 ISI--------IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASP 276
            +I        +      +FD   +    + I  L+  +G +LA+  + + I GHTD   
Sbjct: 441 RAIASWRPASGVTLDQLSLFDSGRATLKRDAIPKLRNVLGRILANRDQRVLIAGHTDDV- 499

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
                  N +LS  RA +     ++ G        I  +   R    +      + NRR+
Sbjct: 500 --GSPEANLKLSQARALAIRDWFVRVGALPVTRFAIQAYGDTRPIADNLTPQGRAMNRRV 557

Query: 335 DIL 337
           +IL
Sbjct: 558 EIL 560


>gi|169633170|ref|YP_001706906.1| hypothetical protein ABSDF1479 [Acinetobacter baumannii SDF]
 gi|169151962|emb|CAP00823.1| conserved hypothetical protein; putative bacterial outer membrane
           domain [Acinetobacter baumannii]
          Length = 471

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 17/225 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
            T+Q       + +               SL    +K           +++  +    +P
Sbjct: 259 DTSQTYAAAFTDKDALAGVLGALKGIPNASLEWVGDKITLKAGDAAALEALTAKVKALVP 318

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
                       ++ + +      + L+ +  +N+ +  L +     + + II+      
Sbjct: 319 HTEVVATAPETAEQSVSNSLSASQTALTAIDPNNVDENALVK----ALNLQIIN------ 368

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    +   +L +   +L   +   + + GHTD++     A  N  LS  RA + 
Sbjct: 369 FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHTDST---GNAAANKALSQRRAQAV 425

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L+  GV   ++    G    +    +        NRRI+  V
Sbjct: 426 VDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFKNRRIEFSV 469


>gi|213963452|ref|ZP_03391706.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213953860|gb|EEB65188.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 454

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 34/288 (11%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE------------HITKNSVDL 113
           E YF       +   K   D+    ++      D    E                ++   
Sbjct: 180 EDYFQHAAGITIKFGKKDRDKDGVADKDDACPDDPGKKELNGCPDRDNDGVADKDDACPD 239

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDL-EKSINKEE 171
           + G    K    R  + I    ++   E  K       +  G  +  + D  +     +E
Sbjct: 240 EAGLPELKGCPDRDGDGIADKDDACPDEAGKPEFNGCPDTDGDGVADNVDQCKDVAGPKE 299

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           N   P    +    + +                   A         E T+  +   +   
Sbjct: 300 NNGCPWPDTDGDGVLDKDDE------------CPEEAGPASNNGCPEVTQE-VQTQLNSF 346

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
             T +FD + +   PE+  VL  I  VL        SI G+TD          N +LS D
Sbjct: 347 AKTILFDVNKATIRPESATVLNNIVNVLNKYKNAKFSIEGYTDT---SGNKAKNQKLSED 403

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           RAYS    L+  G+ + R++   GF   +   ++        NRR++I
Sbjct: 404 RAYSVKAYLIDKGIDQARLTA-KGFGPEKPIASNKTKKGRELNRRVEI 450


>gi|51245063|ref|YP_064947.1| outer membrane porin F [precursor] [Desulfotalea psychrophila
           LSv54]
 gi|50876100|emb|CAG35940.1| related to outer membrane porin F [Precursor] [Desulfotalea
           psychrophila LSv54]
          Length = 241

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+        +L ++   L         + I+GHTD+         N +LS  RA 
Sbjct: 133 FDLNSARLRRSAYPLLAELARALEDERVVEHQVCIKGHTDS---AGAGSYNLQLSYSRAN 189

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +    L  +G+S D++  + G+  +   + +  +     NRR+++ +
Sbjct: 190 AVRDYLAGAGMSVDKLE-VFGYGENMPLVTNSSEANRQLNRRVEVSL 235


>gi|254454298|ref|ZP_05067735.1| OmpA family domain protein [Octadecabacter antarcticus 238]
 gi|198268704|gb|EDY92974.1| OmpA family domain protein [Octadecabacter antarcticus 238]
          Length = 219

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +        T + +++++       +FD  S+         L  +   + +  
Sbjct: 85  EAELRQQMGSNAQIVNTGSQLIVTL---PQDILFDTGSAALSGGLRSDLNALAASMNNFP 141

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              +++ GHTD+      A  N  LS  RA +   VL++SGVS +RI  I G        
Sbjct: 142 NSTVNVIGHTDSD---GTAAFNQDLSARRAQAVSSVLIQSGVSANRIRSI-GRGEDAPIA 197

Query: 323 A--SDPMNSANRRIDILVED 340
           +  +      NRR++I +  
Sbjct: 198 SNLNAEGKRQNRRVEITITP 217


>gi|254438169|ref|ZP_05051663.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198253615|gb|EDY77929.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 220

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +        T + +++++       +FD  SS         L  +   +    
Sbjct: 86  EAELRQEMGSSAQIVNTGSQLIVTL---PQDILFDTGSSALTGGLRNDLNTLAGSMNRFP 142

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              +++ GHTD   +   A  N  LS  RA +   VL++SGV+ +RI  I G        
Sbjct: 143 NSTVNVIGHTD---WDGSAAFNQDLSARRAQAVSAVLIQSGVAPNRIRSI-GRGEDAPIA 198

Query: 323 A--SDPMNSANRRIDILVED 340
              ++     NRR++I +  
Sbjct: 199 TNLNEEGKRQNRRVEITITP 218


>gi|150024266|ref|YP_001295092.1| OmpA family outer membrane protein P60 [Flavobacterium
           psychrophilum JIP02/86]
 gi|113927364|emb|CAL07968.2| outer membrane protein A [Flavobacterium psychrophilum JIP02/86]
 gi|149770807|emb|CAL42272.1| Outer membrane protein OmpA family P60 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 465

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST- 263
             V   +      E +   I   + D   T +FD +      +T+ +L  +  +L     
Sbjct: 332 PTVKGTVANNGCPEVSEEAIK-KLNDYAKTILFDNAKFTFQKQTLPILDAMVAILNEFPT 390

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
              SI G+TD          N  LS +RA +    L+  G+S DR++ I G+       +
Sbjct: 391 SKFSIEGNTDN---SGKKATNQTLSENRAKAVADFLISKGISSDRLTSI-GYGDSMPIAS 446

Query: 324 SDPMN--SANRRIDILV 338
           +      + NRR+++ V
Sbjct: 447 NKTKAGKAQNRRVEVKV 463


>gi|108761081|ref|YP_635504.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|108464961|gb|ABF90146.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 352

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLD 290
               F   ++   P     L  + +VL       VI+I GHTD     ++ R    ++L 
Sbjct: 240 ERITFAPGTAALQPRVQPALDNVADVLLVHPRLGVIAIEGHTDNRGDPDVQR---EVTLA 296

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           RA +    L++ GV  DR+    GF   +   +++      ANRR+D+ V   +G
Sbjct: 297 RAEAVRDYLVERGVPPDRLEA-WGFGPDKPVESNETAQGREANRRLDLRVVAPRG 350


>gi|285017363|ref|YP_003375074.1| ompa family outer membrane protein precursor [Xanthomonas
           albilineans GPE PC73]
 gi|283472581|emb|CBA15086.1| putative ompa family outer membrane protein precursor [Xanthomonas
           albilineans]
          Length = 366

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ I +L +   +L    +  + + GHTD+       + N +LS  RA   
Sbjct: 256 FDFNKSTLRPDAIGLLNEAVGILNSYPDLKVQVAGHTDSI---GSDKYNQKLSERRARVV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDR 341
           Y  L+K GV   R+    G+   R    +       +P   + NRR ++ VE++
Sbjct: 313 YDYLVKHGVDASRLDGPIGYGKTRPIAPNTNPDGSDNPEGRAKNRRTELNVENK 366


>gi|332186728|ref|ZP_08388471.1| type IV / VI secretion system , DotU family domain protein
           [Sphingomonas sp. S17]
 gi|332013380|gb|EGI55442.1| type IV / VI secretion system , DotU family domain protein
           [Sphingomonas sp. S17]
          Length = 475

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 11/179 (6%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
                    ++ A+  + RL       +   +     + ++  L    R G++    D +
Sbjct: 297 ASSGDTPSTRLAALNPEARLTLSRPAAAMPAASSAQASKLRRFLEPEIREGLVKVEEDAQ 356

Query: 233 NT-------PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284
                     +F   S    P    +  +IG  +      + I GH D +P   +   DN
Sbjct: 357 TVRARTTIGQLFRSGSDELEPGREPLFHRIGRAIEDEKGGVVIEGHADNTPVATVRFPDN 416

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
             LS  RA +  +++        R++   G        ++      S NRR++I+V  R
Sbjct: 417 MALSEARAETVAKLIRSDLSDPSRVT-TKGLGDTVPIASNADAAGKSQNRRVEIVVPRR 474


>gi|190573806|ref|YP_001971651.1| putative outer membrane lipoprotein [Stenotrophomonas maltophilia
           K279a]
 gi|190011728|emb|CAQ45347.1| putative outer membrane lipoprotein [Stenotrophomonas maltophilia
           K279a]
          Length = 231

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I +    +   FD   S   P+    L  +   L    + +I + GHT
Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKSTLKPQFYGALNGVAGTLRDYNQTMIEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+    + A +N RLS +RA S  Q L+  GV   RI  + +G ++     ++D   + N
Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLIGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219

Query: 332 RRIDILVEDRQ 342
           RR++I V   +
Sbjct: 220 RRVEIRVIPLK 230


>gi|153873003|ref|ZP_02001734.1| outer membrane protein ompA [Beggiatoa sp. PS]
 gi|152070531|gb|EDN68266.1| outer membrane protein ompA [Beggiatoa sp. PS]
          Length = 301

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD-----NWRLSLD 290
           F+ S++     +   LQKI  VL      ++ ++GH+DA P+R  ++      N +LS  
Sbjct: 192 FNTSTTTLKQASTRQLQKIASVLKMVDPTMVKVKGHSDAQPWRGRSQSESKRLNLKLSQQ 251

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           RA S   VL+  G  ++ +++  G+  +   +  +     + NRR++I V+
Sbjct: 252 RAESVKNVLVNEGFPKN-LTQAKGYGSNDPLVLGNSPAIWAKNRRVEIEVK 301


>gi|89070689|ref|ZP_01157958.1| OmpA family protein [Oceanicola granulosus HTCC2516]
 gi|89043710|gb|EAR49914.1| OmpA family protein [Oceanicola granulosus HTCC2516]
          Length = 229

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +  ++   V  + T   +++++       +FD  S+         L  +   L +  
Sbjct: 95  EAELRRSLGNNVRIDNTGDSLVVTL---PQDILFDTDSATLSGSLQSDLNALARSLNNYP 151

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              I++ GHTD +     A  N  LS  RA +    L+ SGVS  RI+ + G        
Sbjct: 152 STTITVIGHTDNT---GEASYNQNLSRRRAQAVTSTLISSGVSAGRINTV-GRGEDAPIA 207

Query: 323 AS--DPMNSANRRIDILV 338
            +  +     NRR++I++
Sbjct: 208 TNLTEDGRRQNRRVEIII 225


>gi|313203887|ref|YP_004042544.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312443203|gb|ADQ79559.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 506

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+    +    +  +L K+ +V+  +    + I GHTD       A  N  LS  RA + 
Sbjct: 404 FESGKDVIKKSSFAILNKVVKVMNDNPSYNLEINGHTDNQ---GAAAMNLTLSQKRADAV 460

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L K+GV   +++   GF         A+    + NRR++  V
Sbjct: 461 KAYLTKNGVDAGKLAA-KGFGQTVPVADNATAAGRAKNRRVEFKV 504


>gi|229591493|ref|YP_002873612.1| hypothetical protein PFLU4061 [Pseudomonas fluorescens SBW25]
 gi|229363359|emb|CAY50495.1| putative outer membrane protein [Pseudomonas fluorescens SBW25]
          Length = 257

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 19/235 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL- 175
           +  +  Q  +  +    L    +S       TR +    D      L    + + +    
Sbjct: 22  TPPENPQLLQARSQFSSLQQKPESNTLAAVETRIASNAVDRANQLSLHNRTDPQIDQLAY 81

Query: 176 -----PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI--VKGVLFETTRTGILISI 228
                  L+++ I++ K   +L ++A   +     +    +  ++ +    T  G +++ 
Sbjct: 82  LATQKIALAEQTIVSRKTDAQLDNIAVDRTQVQLDVRTAQLKALQAMKARPTERGQVVTF 141

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
            D     +FD   +   P +    Q +   L  + E  + + G TD++        N  L
Sbjct: 142 GD----VLFDTGRAELKPGSQRDFQGLATFLLQNPERQVRVEGFTDST---GGDAFNQSL 194

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           S  RA +  + L + GV   R+  + G+        +    S   NRR++++V +
Sbjct: 195 SERRAQAVARGLQQLGVGPQRM-AVMGYGKQFPVADNVSAQSRQLNRRVEVIVSN 248


>gi|3493603|gb|AAC33455.1| outer membrane protein homolog [Vitreoscilla sp. C1]
          Length = 217

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
               E  R G  I ++    +  F   S          L  +  VLA  T+  I+I GHT
Sbjct: 90  NTQVEVNRVGDEIRLV-MPESITFATGSYQLNSSASTSLNSVSSVLAQYTDTTINIVGHT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++        N  LS +RA +    L+   V+ +RI+ + G    +   +++     + 
Sbjct: 149 DST---GSDAINEPLSRNRASAVANYLVSRNVASNRITTV-GAGCRQPVASNNTVAGRAE 204

Query: 331 NRRIDILVEDRQ 342
           NRR++I V   Q
Sbjct: 205 NRRVEITVNPIQ 216


>gi|237741116|ref|ZP_04571597.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|229430648|gb|EEO40860.1| outer membrane protein [Fusobacterium sp. 4_1_13]
          Length = 144

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I+GHTD+    + A  N++
Sbjct: 18  TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIQGHTDS--IGSNAY-NFK 74

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G++EDRI  I      +    ++     + NRR++  +  R+
Sbjct: 75  LSRRRAESVKAKLLEFGLAEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 132


>gi|15836945|ref|NP_297633.1| outer membrane protein [Xylella fastidiosa 9a5c]
 gi|9105169|gb|AAF83153.1|AE003886_12 outer membrane protein [Xylella fastidiosa 9a5c]
          Length = 389

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + VL++  E+L    +  + + GHTD++     A  N +LS  RA   
Sbjct: 286 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 342

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           Y  L  +G+   R+    G+          +    + NRR ++ V++
Sbjct: 343 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 389


>gi|162147969|ref|YP_001602430.1| outer membrane lipoprotein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542586|ref|YP_002274815.1| OmpA/MotB domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|172046688|sp|P84838|OMPC_GLUDA RecName: Full=Outer membrane protein; AltName: Full=OMPC; Flags:
           Precursor
 gi|161786546|emb|CAP56128.1| Outer membrane lipoprotein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530263|gb|ACI50200.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 378

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   S        ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 270 FFDWDRSDLTARAREIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNMGLSIRR 329

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A S    L++ GV    I  I G+      + + P      NRR++I++
Sbjct: 330 AQSVKAELIRDGVPTGAID-IHGYGEQHPLVPTGPNTREPQNRRVEIIL 377


>gi|217415925|dbj|BAH03186.1| putative OmpA-family membrane protein [Edwardsiella tarda]
          Length = 576

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD   S+     T  ++  +  + A    +I + GHTD +      + N  
Sbjct: 438 IVRLDSMSLFDSGKSVLKTGSTKWLVNSLVGIKAKPGWLIVVSGHTDNT---GSPQLNQM 494

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA +    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 495 LSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVATNDTPEGRALNRRVEISLVPQ 551


>gi|241767706|ref|ZP_04765331.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241361321|gb|EER57865.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 219

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
             + + ++K++   +   ++    L   +A  +  G     T     I I     + +F 
Sbjct: 44  QIDLVASLKQEVEKRQQEEQRRMALEKALAIPLASG---RVTVHNGRIGIS---GSVLFA 97

Query: 239 KSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPF----RNIARDNWRLSLD 290
             S    PE   +L+ +   L        E++ + G TD +           DN  LS  
Sbjct: 98  TGSDELRPEGRQLLKSLVPPLQVYLRERDEMLMVSGFTDNTTLLRGPHQRFADNLELSAQ 157

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335
           RA +  + L+  G+   ++   +  A   +   +D    + NRR++
Sbjct: 158 RALTVARALIDEGMPSSQVFAAAFGAEQPVADNADEKGRAQNRRVE 203


>gi|237750612|ref|ZP_04581092.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC
           43879]
 gi|229373702|gb|EEO24093.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC
           43879]
          Length = 255

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHST-- 263
           +++ I  G L E    G  + +    +  +F+  ++  + +     L  +   +A     
Sbjct: 105 LSNLIQDGGLLEQIEQGTTLRL---PSDILFEPGTAELVNQDRKTELDLLATAIAKMPPE 161

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I+IRG+TD S      R+N+ L+  RA +  + LM  GV   R+   + +  +   + 
Sbjct: 162 VTINIRGYTDNSSPAG-YRNNYELAAARASNVMEYLMSRGVDPARL-SFTSYGQYNPIVP 219

Query: 324 SDP--MNSANRRIDIL 337
           +       AN R+++ 
Sbjct: 220 NTSEVNRRANNRVEVF 235



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 1/161 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK   ++ P     W + YADF+++L+A F+ ++ I+A +    KA+ + F       
Sbjct: 1   MAKKCKCEECPA-GEKWAVPYADFLSLLLALFIALYAISAANTSRVKAVTEAFITIFDAT 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
               + +     PP+  +  +      ++ + N        T  +      +  +     
Sbjct: 60  PMPERTMPVMIIPPDPGTVRQETKDTLKNTSTNLNAPTTVVTITQLSNLIQDGGLLEQIE 119

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
              +    + +  +    + + +    E  +       +PP
Sbjct: 120 QGTTLRLPSDILFEPGTAELVNQDRKTELDLLATAIAKMPP 160


>gi|34556650|ref|NP_906465.1| CADF precursor [Wolinella succinogenes DSM 1740]
 gi|34482364|emb|CAE09365.1| CADF PRECURSOR [Wolinella succinogenes]
          Length = 341

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P  +  ++     L  H      + GHTD+   +     N +LS  R+ + 
Sbjct: 236 FPFDSAEITPAYMDEVKDFALFLENHKGVSAKLEGHTDS---KGSDAYNKKLSAKRSNAV 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            + L+K G+ + R+S   GF   R     A+D     NRR++ ++   +
Sbjct: 293 KEALIKLGIDKSRLSS-EGFGEERPIADNATDEGRQKNRRVEAIIAPLK 340


>gi|153004024|ref|YP_001378349.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027597|gb|ABS25365.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 506

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289
           ++   FD        ++  VL  I  +LA   E   + + GHTD          N  LS 
Sbjct: 393 KDAIQFDTGRDTLRSQSFPVLDAISGILAAHPELRRVRVEGHTDDV---GTNAYNKDLSD 449

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            RA +  + L   G+   R+   +G+   R    +      + NRR++  + D
Sbjct: 450 RRARTVVRYLAGKGIVPGRLVP-AGYGEERPIAPNTSALGRAKNRRVEFTIVD 501


>gi|256846747|ref|ZP_05552203.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|256717967|gb|EEU31524.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
          Length = 190

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 61  TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 117

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 118 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 175


>gi|305432269|ref|ZP_07401432.1| fibronectin-binding protein [Campylobacter coli JV20]
 gi|304444617|gb|EFM37267.1| fibronectin-binding protein [Campylobacter coli JV20]
          Length = 332

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 229 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 285

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L K GV + RI  + G+   + + ++D     + NRR++
Sbjct: 286 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDTKEGRADNRRVE 326


>gi|226229138|ref|YP_002763244.1| hypothetical protein GAU_3732 [Gemmatimonas aurantiaca T-27]
 gi|226092329|dbj|BAH40774.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 457

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD    +  PE+   L++I  +L+ H+   + I GHTD       A  N  LS  RA + 
Sbjct: 355 FDTGKDVIRPESTPTLKEIAAMLSEHADLQLIIEGHTDNV---GAAPANLALSQRRADAV 411

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L+   G+   R++   G        A+        NRR++++
Sbjct: 412 RSALVSDYGIDGGRLTA-KGLGQTVPATANTTPEGRQQNRRVELV 455


>gi|187251173|ref|YP_001875655.1| peptidoglycan-associated (lipo)protein [Elusimicrobium minutum
           Pei191]
 gi|186971333|gb|ACC98318.1| peptidoglycan-associated (lipo)protein-like outer membrane protein
           [Elusimicrobium minutum Pei191]
          Length = 189

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRN 233
           P + K +   +  K + +   K +S  +SG   V     K V+  TT             
Sbjct: 36  PKVVKIEKKVVIVKHQAKPEPKNLSEEVSGYASVRQAGTKQVVTFTTP------------ 83

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F+ +S     E+   L+K+  VL         ++G+TD+    + A +   LS  RA
Sbjct: 84  -ILFETNSDKLKTESYDPLKKVAVVLKARPNMQTEVKGYTDS--LGDPAYNV-VLSEKRA 139

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
            S   VL+++GV+E  ++    G A       +    + NRR+++ + ++
Sbjct: 140 NSVRNVLVENGVNEANVTAKGYGAADPIADNKTKEGRAKNRRVELDITNK 189


>gi|92115867|ref|YP_575596.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91798761|gb|ABE61136.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 334

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 101/313 (32%), Gaps = 19/313 (6%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSI 102
            ++A  + ++   A   D     +   N     L+   +G F         +  K+ LS 
Sbjct: 26  AMLAIAMGLFGAIAAHADATIPSKDIANARDNALLKRYEGSFIMSYEKLAFTDFKVPLSK 85

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
            E    +  D       + K+   +E     ++    +E     + R+ +         +
Sbjct: 86  LEKAGNDRRDRMNNQVFKPKEEIEIEGARTRIAYLLPAERSPLEVLRNYQDV-VKAAGGE 144

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           +  +   EE    P  S +         +   L   +           +V  V  +    
Sbjct: 145 VLYACKGEECGGDPERSSDGGGDGYVTVQAFQLKDDLYCKALNERTVALVHIVEPKPREQ 204

Query: 223 GILISIIDQRNTP------------MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
            +++   D+                 FD + +   PE+   L +I  +L    +  + I 
Sbjct: 205 KMVVVKADEMARSIGATGRIALYGIFFDTAKADLKPESNPTLAEIAGLLNADPKLAVLIV 264

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           GHTD          N  LS  RA +  + L  +   E R  + +G        ++D    
Sbjct: 265 GHTDNQ---GAFDYNLDLSRRRAEAVVKTLAANFRVEPRRLRAAGVGMMAPAASNDAEDG 321

Query: 328 NSANRRIDILVED 340
            + NRR++++  +
Sbjct: 322 RAKNRRVEVVKLN 334


>gi|302337004|ref|YP_003802210.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301634189|gb|ADK79616.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 405

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 13/161 (8%)

Query: 185 AMKRKKRLQDLAKK-ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           A  R+ R + + K+ +   L   +A+N +          G++IS+        F   S++
Sbjct: 252 ATARQVRSRSMDKETVKDELERRIAENGIPDAGVRVGDDGVIISL----ENIQFKADSAV 307

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
           PLP  +  L+++  +L    +  I + GHT  +           LSL+RA +    L   
Sbjct: 308 PLPGEMDKLKRVVSLLKLYPDRDILVTGHTALAGTAEGRM---ALSLERARTVAAFLKDE 364

Query: 303 -GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             + +DR+  I G         +D       NRR++I + +
Sbjct: 365 LNIDDDRLM-IEGKGAGAPVAPNDTEEGKRKNRRVEITILE 404


>gi|255530097|ref|YP_003090469.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343081|gb|ACU02407.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR+   A +I + +              E  R G  I I+   +  +F    S    +  
Sbjct: 113 KRMDKQAAEIQNAIPNA-----------EVIREGEGI-IVKFDSGILFGFDKSDLTAQAK 160

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++ +   L       I + GHTD    +     N  LS  RA +     +  GV   R
Sbjct: 161 TNIKSLAGSLNQYPGTDIKVIGHTDN---KGTEAYNMGLSERRAAAVKAYAVSQGVPSSR 217

Query: 309 ISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           +  I  GF+      +++   +ANRR+++++
Sbjct: 218 LITIGKGFSEPIEDNSTEAGRAANRRVEVVI 248


>gi|222100883|ref|YP_002535451.1| Motility protein B [Thermotoga neapolitana DSM 4359]
 gi|221573273|gb|ACM24085.1| Motility protein B [Thermotoga neapolitana DSM 4359]
          Length = 288

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +++     +  E    G LI + D      F+  S+    E   +L K+G+ V+ H+T V
Sbjct: 88  LSEEYKGKITVEERDEGTLIILKDM---VFFETGSAKLTAEAKDLLAKVGQIVIEHTTNV 144

Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + + G+TD  P    +I   NW LS  RA S     +   + E R+
Sbjct: 145 LEVFGYTDDRPVLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 42/133 (31%), Gaps = 1/133 (0%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +       W   Y+D +T+L+ FF+ +  ++       + +             + 
Sbjct: 3   AKKQEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGQPPSV 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G       P  +S+  I   +     +    + +   ++       +   F   +++ 
Sbjct: 63  LMGGRSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIILKDMVFFETGSAKL 122

Query: 140 SEHCKNSLTRDSE 152
           +   K+ L +  +
Sbjct: 123 TAEAKDLLAKVGQ 135


>gi|192358872|ref|YP_001981881.1| putative agglutination protein [Cellvibrio japonicus Ueda107]
 gi|190685037|gb|ACE82715.1| probable agglutination protein [Cellvibrio japonicus Ueda107]
          Length = 599

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFR 278
           R  ++  + +     +FD  SS+  P     L  +   + ++ +V  I + GHTD +   
Sbjct: 478 RDELITDVNNLSGDALFDVGSSVLKPGATQKLDALIAQIKNTPKVVGIRVEGHTDNT--- 534

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
                N  LS  RA       + +G+ E+    + GF   R    ++     +ANRR++I
Sbjct: 535 GTDALNIPLSKARAQRVRDYAVLNGL-ENIPVSVDGFGASRPVADNNTEAGRAANRRVEI 593

Query: 337 LVEDR 341
            +  +
Sbjct: 594 SITRQ 598


>gi|294672984|ref|YP_003573600.1| OmpA family protein [Prevotella ruminicola 23]
 gi|294473810|gb|ADE83199.1| OmpA family protein [Prevotella ruminicola 23]
          Length = 374

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +F+   +   PE++  +QK+ + +  +      ++GHTD        + N  LS  R
Sbjct: 269 NNILFETGKATLKPESMEEIQKVADYMKKNPSVRFEVQGHTDNQ---GSDKINDPLSQQR 325

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
           A +  + L + G  E  +  + G   H       +D   + NRR++ +
Sbjct: 326 AEAVVKALAQLGCDEFNLRAV-GKGSHEPVADNKTDAGRAQNRRVEFI 372


>gi|213963523|ref|ZP_03391776.1| inner membrane lipoprotein YiaD [Capnocytophaga sputigena Capno]
 gi|213953803|gb|EEB65132.1| inner membrane lipoprotein YiaD [Capnocytophaga sputigena Capno]
          Length = 229

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++   AKKI   + G            +    GI+++  +      FD +      ++  
Sbjct: 76  QMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINEKSKQ 126

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L K+  +L    +  + + GHTD+         N  LS  RA +        G++  R 
Sbjct: 127 TLDKLAAILKEYPDTNVLVAGHTDSV---GKDEYNLGLSQRRAQAVTNYFKSKGLAGSRF 183

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +    +       ++D     + NRR+++++   +
Sbjct: 184 T-TKWYGEKNPIASNDTAEGRAKNRRVNVVIVPNE 217


>gi|15639284|ref|NP_218733.1| outer membrane protein (tpn50) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025526|ref|YP_001933298.1| outer membrane protein TpN50 [Treponema pallidum subsp. pallidum
           SS14]
 gi|586110|sp|P38369|TPN50_TREPA RecName: Full=Outer membrane protein tpn50; AltName: Full=Antigen
           tpp57; Flags: Precursor
 gi|3322558|gb|AAC65272.1| outer membrane protein (tpn50) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|7144504|gb|AAA20517.2| TpN50 precursor [Treponema pallidum]
 gi|189018101|gb|ACD70719.1| outer membrane protein TpN50 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059692|gb|ADD72427.1| outer membrane protein Tpn50 (Antigen tpp57) [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 417

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L   + D  +       T  G+ ISI        FD  S+   P     L+KI E+L  
Sbjct: 282 ELQETLKDLHMPDAKVRETEEGVTISI----ENVQFDADSASLAPSEYEKLRKIAELLRA 337

Query: 262 STEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             +  + + GH   +  R   +D  R+S +RA    + L + GV +       G    + 
Sbjct: 338 FPDRELLVSGH---AARRGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQS 394

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
              +D  +    NRR++I +  +
Sbjct: 395 IAPNDSEDGRRKNRRVEITIISK 417


>gi|50119379|ref|YP_048546.1| putative porin [Pectobacterium atrosepticum SCRI1043]
 gi|49609905|emb|CAG73343.1| putative porin [Pectobacterium atrosepticum SCRI1043]
          Length = 506

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + R + LAK        +   ++       T   G++  + D     MFD +S+    + 
Sbjct: 78  QNREEALAKIAQEENIAITTRSLQSQEKSGTETVGLVAQVQDS---GMFDTNSAQLSTDG 134

Query: 249 IVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           +  ++KI   +     + VI + GHTDA+     A  N RLS  RA +  +VL ++G+S 
Sbjct: 135 LRQVKKIATAMKEGDQSGVILVVGHTDAT---GSAEWNQRLSEQRAQNVGRVLEQAGLSA 191

Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337
            ++  + +G A       +    ++NRR++I+
Sbjct: 192 QKLYFQGAGSARPVADNVTITGRTSNRRVEIV 223


>gi|34556728|ref|NP_906543.1| motility protein MotB [Wolinella succinogenes DSM 1740]
 gi|34482442|emb|CAE09443.1| MOTB PROTEIN [Wolinella succinogenes]
          Length = 255

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 12/190 (6%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G        LEK    E        +      +   + +   A  I+   S +   +   
Sbjct: 51  GSIQGALGVLEKGQMTEIMPPKRIQALPIQQNVDTPEAINAFASMITEY-SEMTKISDGP 109

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRG 270
            V  E    G ++SI    +  +F+  S+     E I+ L++    +   +    I + G
Sbjct: 110 AVKMEEAEDGFILSI---PSELLFESGSATITNKEGILFLKRTALEINKLSNDMHIKVIG 166

Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
           HTD    R     +DNW LS+ R  +  ++L++  V+  RIS   G        ++    
Sbjct: 167 HTDNDRLRPTATYKDNWELSIARGVNVAKMLLEERVNPARISA-GGNGEFDPVASNATPE 225

Query: 327 MNSANRRIDI 336
             + NRR+D+
Sbjct: 226 GKAKNRRVDL 235


>gi|262275699|ref|ZP_06053508.1| outer membrane protein A precursor [Grimontia hollisae CIP 101886]
 gi|262219507|gb|EEY70823.1| outer membrane protein A precursor [Grimontia hollisae CIP 101886]
          Length = 331

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNW 285
           +  N  +F    +   P      Q++G +L           +I GHTD+         N 
Sbjct: 217 EADNVELFAFGKAELSPNAS---QQLGPMLKRLQNFDEATATIIGHTDSV---GSEAFNQ 270

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +LS  RA S     + +G+S +R++ I G        ++      + NRR++I
Sbjct: 271 KLSEQRAQSVANYFISNGISAERLT-IIGKGETSPIASNKTKEGRAKNRRVEI 322


>gi|262197467|ref|YP_003268676.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262080814|gb|ACY16783.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 540

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 23/135 (17%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279
            G  I I+D+ +   F     + L ++  VL+ + +VL    +   + I GHTD    R 
Sbjct: 410 EGDQIIILDKVH---FATDEDVILDDSKPVLEAVAQVLRTRPDIERVRIEGHTD---VRA 463

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSA-- 330
               N  LS  R  S  Q L+ SGV  +R+    G+ H R  I         + +++   
Sbjct: 464 SDAYNLDLSQRRVNSVMQFLIDSGVGAERLEA-KGWGHTRPIIDDAHCDRPDEQLDAECT 522

Query: 331 -----NRRIDILVED 340
                NRR++  +  
Sbjct: 523 RLTSMNRRVEFHIRR 537


>gi|207724483|ref|YP_002254880.1| outer membrane protein [Ralstonia solanacearum MolK2]
 gi|206589704|emb|CAQ36665.1| outer membrane protein [Ralstonia solanacearum MolK2]
          Length = 277

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 78/254 (30%), Gaps = 19/254 (7%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P   +       +   +    +     +        R       + +  +  +  +  
Sbjct: 32  GAPGDPAPATAANPVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 91

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204
                  K L              +     +  +     +R++   D+A  + ++ +   
Sbjct: 92  NWTGNVQKILSPQIKQVNRGQLNIDGTQVAVHGDVQNEAQRQQLASDMATTLGASYTIKN 151

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           GL    + +  L + T    +I          F+  S+   P+   +L ++  VL     
Sbjct: 152 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 202

Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I I GHTD          N  LS  RA +    L+  G     ++ I G    +   A
Sbjct: 203 RKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLINKGAEPGTLTAI-GVGPDQPVAA 258

Query: 324 S--DPMNSANRRID 335
           +  D   S NRRI+
Sbjct: 259 NTTDEGRSRNRRIE 272


>gi|262278657|ref|ZP_06056442.1| outer membrane protein [Acinetobacter calcoaceticus RUH2202]
 gi|262259008|gb|EEY77741.1| outer membrane protein [Acinetobacter calcoaceticus RUH2202]
          Length = 255

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 39/186 (20%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +    D++ +I   +    PP      L++ + ++               + D+ +K  +
Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E                  F+  S++       +L ++   L       + I GHTD+ 
Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAVALNKVGGKKVKIVGHTDS- 192

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                A  N +LS DRA +    L+   +  D +S   G    +    +        NRR
Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHLSA-EGLGSSKPVADNTSPEGRKKNRR 249

Query: 334 IDILVE 339
           I+  V 
Sbjct: 250 IEFTVL 255


>gi|253701760|ref|YP_003022949.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251776610|gb|ACT19191.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 486

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +F   SS   P+ +  ++KI ++L  +      + GHTD +      RDN +LSL RA
Sbjct: 377 TVLFAVDSSDVSPKYLGQIKKIADLLKANPGSTALVEGHTDNT---GALRDNLKLSLRRA 433

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
            +  + L++ GV   R+  + G    +     A++     NRR
Sbjct: 434 ENLKRALVRYGVDP-RLLAVKGEGSLQPVASNATEQGRQKNRR 475


>gi|104780438|ref|YP_606936.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109425|emb|CAK14126.1| putative outer membrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 230

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+         L  I   L     +  +S+ GHTD+       + N +LS  RA S
Sbjct: 126 FEFDSARLTANDKERLNTIATRLKKEAPSARLSVTGHTDSV---GSDKYNQKLSEARARS 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             + L++SGV       + G    +    +      + NRR +I ++ 
Sbjct: 183 VVEYLVESGVPRASFVSVVGAGETQPVADNATADGRAMNRRTEIKIQR 230


>gi|312173865|emb|CBX82119.1| putative type VI secretion system-associated hypothetical protein
           [Erwinia amylovora ATCC BAA-2158]
          Length = 551

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T   + +         +FD       P +  +L K    +       I + GHTD +   
Sbjct: 420 TPQAVRL-----DALSLFDTGKYQLKPNSTKMLVKALMGIKAKPGWLIVVAGHTDNT--- 471

Query: 279 NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             A  N  LS  RA +    +L  S VS      + G+   R   ++D      ANRR++
Sbjct: 472 GEANANQVLSHKRAEALRHWMLSTSDVSPT-CFAVQGYGATRPIASNDTVEGREANRRVE 530

Query: 336 ILVEDR 341
           I +  +
Sbjct: 531 ISLVPQ 536


>gi|292489687|ref|YP_003532577.1| putative type VI secretion system-associated protein [Erwinia
           amylovora CFBP1430]
 gi|292898097|ref|YP_003537466.1| outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291197945|emb|CBJ45046.1| putative outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291555124|emb|CBA23275.1| putative type VI secretion system-associated hypothetical protein
           [Erwinia amylovora CFBP1430]
          Length = 551

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T   + +         +FD       P +  +L K    +       I + GHTD +   
Sbjct: 420 TPQAVRL-----DALSLFDTGKYQLKPNSTKMLVKALMGIKAKPGWLIVVAGHTDNT--- 471

Query: 279 NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             A  N  LS  RA +    +L  S VS      + G+   R   ++D      ANRR++
Sbjct: 472 GEANANQVLSHKRAEALRHWMLSTSDVSPT-CFAVQGYGATRPIASNDTVEGREANRRVE 530

Query: 336 ILVEDR 341
           I +  +
Sbjct: 531 ISLVPQ 536


>gi|332559394|ref|ZP_08413716.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|332277106|gb|EGJ22421.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 310

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L  + + L       + I GHTDA         N  LS  RA S 
Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAASV 262

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339
            + L+   GV   +++    G+   R    ++   + NRR+++++ 
Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308


>gi|254706491|ref|ZP_05168319.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10]
          Length = 47

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 9  QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLV 50
          +   + II+++    D   ++ G WKI YADFMT +MAFFLV
Sbjct: 6  ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLV 47


>gi|149917198|ref|ZP_01905698.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149822114|gb|EDM81507.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 395

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 232 RNTPMFDKSSSIPLPET-----IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
               MFD                 +L  +  VL  + ++ I I GHTD+   +  +R N 
Sbjct: 275 DGKIMFDSGKYDLKSRKFADSNSKLLDDVYTVLNTNPDITIEIGGHTDS---KGSSRSNQ 331

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           RLS +R  S  + L+  G+   RI+   G+        +        NRR++IL
Sbjct: 332 RLSENRVKSVREYLVDKGIDGSRIT-FKGYGEDVPVDTNRTKEGRENNRRVEIL 384


>gi|293611455|ref|ZP_06693750.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826239|gb|EFF84609.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123511|gb|ADY83034.1| OmpA/MotB [Acinetobacter calcoaceticus PHEA-2]
          Length = 159

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            ++K   F  T  G  + +       +FD +++         L ++   L       + I
Sbjct: 33  KLLKKEGFVLTDEGWTLGL---PERLLFDFNNAQLKQSHEAELVRLANQLNKYDLNKLKI 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD       A  N +LS +RA S   + +  G  ++ I  + G    +  + +  + 
Sbjct: 90  VGHTDDV---GDATYNQKLSEERAQSVANLFLTRGFKKENIY-VIGRGSTQPYVPNTTNE 145

Query: 327 MNSANRRIDILVED 340
             + NRR+ I+V  
Sbjct: 146 NRAINRRVAIVVIP 159


>gi|15889974|ref|NP_355655.1| porin [Agrobacterium tumefaciens str. C58]
 gi|15157937|gb|AAK88440.1| porin [Agrobacterium tumefaciens str. C58]
          Length = 220

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           ++G     TR G  I +    +   F       +P     L  +  VL        I I 
Sbjct: 91  LQGTGVSVTRRGDSIVLN-MPSNITFATDQDQVIPPFYQTLDSVAIVLNKF-NRTLIDIN 148

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD++      + N  LS  RA S    L   GV + RIS + GF   +   ++     
Sbjct: 149 GHTDST---GSLQHNQALSERRAASVANYLGARGVDQRRISTL-GFGPSQPIASNATSDG 204

Query: 328 NSANRRIDILVEDRQG 343
            + NRR+++L+   +G
Sbjct: 205 RAQNRRVEVLISPLKG 220


>gi|330807884|ref|YP_004352346.1| OmpA/MotB, OmpA family protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375992|gb|AEA67342.1| Conserved hypothetical protein; putative OmpA/MotB, putative OmpA
           family protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 241

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I++ D     +FD   S    E    L  +   L+H+    I + GHTD+         
Sbjct: 128 VITLND-AGKVLFDFDKSDLTAEARSQLDGLMGKLSHANVASIRVVGHTDSV---GSDAY 183

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           N  LS  RA S  + L+  G++ D+++   G         +  D   + NRR+++ ++ 
Sbjct: 184 NQGLSERRASSVVEYLLTQGLAPDKLTS-EGKGESEPVADNETDEGRAQNRRVELHIQR 241


>gi|313205096|ref|YP_004043753.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312444412|gb|ADQ80768.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 426

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S      +   L +I   L    +   +S+ G+TD   +      N  LS+ RA S
Sbjct: 323 FEFGSDKLTTNSYATLDQIALTLKDKSAKVRLSVAGYTD---YIGTEEYNQILSVKRANS 379

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  GV    ++ I+G+        ++      ANRR++  +
Sbjct: 380 VRIYLLNKGVPASSVT-ITGYGEKDPVANNNTDKGRQANRRVEFQI 424


>gi|84625147|ref|YP_452519.1| outer membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578417|ref|YP_001915346.1| OmpA family outer membrane protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84369087|dbj|BAE70245.1| outer membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522869|gb|ACD60814.1| OmpA family outer membrane protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 365

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+ I +L +  E+L    +  + + GHTD+   +     N +LS  RA + 
Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
           Y  L K+GV   R+    G+   R    +       +P   + NRR ++ V++
Sbjct: 313 YDYLTKNGVDASRLVGPIGYGKSRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365


>gi|313674269|ref|YP_004052265.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312940967|gb|ADR20157.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 526

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
           + DN    +   + + G  I +     + +F + +S     +   L ++  +L  +    
Sbjct: 397 IEDNSTVKLELLSLKEGTTIQL----KSVLFKRGTSEIKDGSFEELDRVYTMLKKNPTVE 452

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324
           I + GHTD +     A+ N  LS  R+    + L++ G++  R+    G+   R   ++ 
Sbjct: 453 IELAGHTDNT---GSAKLNIELSQKRSDKIKEYLVEKGINPKRLQS-KGYGGARPIASNK 508

Query: 325 -DPMNSANRRIDILV 338
            +     NRR++  +
Sbjct: 509 SEATRKLNRRVEFTI 523


>gi|28199584|ref|NP_779898.1| outer membrane protein [Xylella fastidiosa Temecula1]
 gi|28057699|gb|AAO29547.1| outer membrane protein [Xylella fastidiosa Temecula1]
          Length = 389

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + VL++  E+L    +  + + GHTD++     A  N +LS  RA   
Sbjct: 286 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 342

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           Y  L  +G+   R+    G+          +    + NRR ++ V++
Sbjct: 343 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 389


>gi|121603984|ref|YP_981313.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592953|gb|ABM36392.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 220

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++QD    +    +G        GV    T+    + + D  +   FD   S       
Sbjct: 76  KKMQDQKIAMERATAGT-------GVAVSQTQDN-RLKL-DIPSDVSFDVGRSAIKSNFA 126

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL      L  +    +SI GHTD++   ++      LS+DRA +A   L+  GV+  R
Sbjct: 127 PVLTNFATSLNQNPITTVSIIGHTDSTGSDSVNNP---LSVDRANAARDYLVGRGVAAQR 183

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I    G         +      + NRR++I V
Sbjct: 184 I-ATDGRGSREPIADNSSAQGRAKNRRVEIYV 214


>gi|157370029|ref|YP_001478018.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568]
 gi|157321793|gb|ABV40890.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 569

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD          T +++  +  + A    +I + GHTD +        N  
Sbjct: 430 IVRLDSMSLFDSGKYALKAGSTKMLINSLVGIKAKPGWLIVVAGHTDNT---GNPALNQT 486

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LS  RA +    +  +G   +    + G+   R    +D     + NRR++I +  +
Sbjct: 487 LSQKRAAAVRDWMRDTGDVPESCFAVQGYGESRPVATNDTPEGRALNRRVEISLVPQ 543


>gi|312174309|emb|CBX82562.1| putative outer membrane lipoprotein yiaD precursor [Erwinia
           amylovora ATCC BAA-2158]
          Length = 221

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR+G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 84  VQEAKLRDKMKGTGVSVTRSGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 142

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD+       + N  LS  RA      L+  GV+ +R+ + +G       
Sbjct: 143 PKTAVNVVGYTDS---SGSRQLNMNLSQQRADGVGSALIAQGVAANRV-RTNGMGSDNPV 198

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 199 ASNSSAEGKAQNRRVEITLSPLQ 221


>gi|261252822|ref|ZP_05945395.1| outer membrane protein [Vibrio orientalis CIP 102891]
 gi|260936213|gb|EEX92202.1| outer membrane protein [Vibrio orientalis CIP 102891]
          Length = 222

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 16/210 (7%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  +++  G+    S      I       +   + +     ++   +           
Sbjct: 18  QATQRQNATTGESETNSATKGALIGALTGVAVGLATGDNADERRKHALIGAAGGAAVGGG 77

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETIVVLQKI 255
            G   D     +  E   +G+ +  +   N  M        F  SS    P     L+ +
Sbjct: 78  VGYYFDQQEAALRKELLDSGVQVERV-GENQLMLRLENGIGFQSSSYALDPSIHNTLRGV 136

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L    +  + I GHTD++        N  LS  RA S    L+  GV+  R     G
Sbjct: 137 ARILVEYPDTSLVIDGHTDST---GSDTTNQVLSERRAESVRSYLVSQGVAAGRAVA-RG 192

Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342
                    +D     + NRR++I +   +
Sbjct: 193 NGERYPICTNDTTTGRACNRRVEIQILPLK 222


>gi|296137072|ref|YP_003644314.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
 gi|294341249|emb|CAZ89650.1| putative OmpA family protein [Thiomonas sp. 3As]
 gi|295797194|gb|ADG31984.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
          Length = 226

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + +      L A     G   + T+T      ++      F   S+   P    +L+ + 
Sbjct: 80  QHLEKQKQDLQAQAQASGTGVQVTQTQDNRLKMNVPADAGFATGSAQLNPRMYPILESLA 139

Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L  +    + + G TD +        N+ LS +RA +    L+  GV+  R++   G 
Sbjct: 140 TGLNQNPSETVQVFGFTDNT---GTDAINYPLSENRALTVKNFLVSRGVAPQRVT-TQGL 195

Query: 316 AHHRLKIASDP--MNSANRRIDILV 338
                  ++      +ANRR++I V
Sbjct: 196 GPQNPVASNATAQGRAANRRVEIYV 220


>gi|77361745|ref|YP_341320.1| lipoprotein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876656|emb|CAI87878.1| putative lipoprotein [Pseudoalteromonas haloplanktis TAC125]
          Length = 209

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            E  R G  + ++   +   F    S         L  I +V+    +  +S+ GHTD++
Sbjct: 85  VEVVREGDNLRLV-MPSNITFATDQSYISSGFHNTLSAIAKVMNKYEKTYLSVEGHTDST 143

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                   N  LS  RA S    L+   +  +RI   +G+   R   ++D  N  + NRR
Sbjct: 144 ---GKDSYNMSLSQQRAQSVKNYLVNQQIMAERI-STTGYGETRPISSNDSANGRAQNRR 199

Query: 334 IDI-LVEDRQ 342
           ++I +V + Q
Sbjct: 200 VEIQIVPNTQ 209


>gi|126641241|ref|YP_001084225.1| OmpA/MotB [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 219 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 277

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 278 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 331

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 332 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 387

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 388 NRRIEFSV 395


>gi|312130324|ref|YP_003997664.1| v-type h(+)-translocating pyrophosphatase [Leadbetterella
           byssophila DSM 17132]
 gi|311906870|gb|ADQ17311.1| V-type H(+)-translocating pyrophosphatase [Leadbetterella
           byssophila DSM 17132]
          Length = 878

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 201 STLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           S +   + D +++ +  E ++ G     + +D      F + S+     ++  ++ I  +
Sbjct: 741 SFMDNGIEDQLIEFIEDENSKAGNDNWFNFVDLN----FKRGSNDIDESSMEEVKNIAAI 796

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I + G+TD +        N +LS +RA +  + L+  G+SEDR+S   GF  
Sbjct: 797 LKEYPQVKIKVGGYTDNT---GTPEGNLKLSEERATNVKKALIALGISEDRLSS-EGFGQ 852

Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341
                 +  +     NRRI I V ++
Sbjct: 853 EHPVADNTTEEGRQKNRRIAISVREK 878


>gi|224823894|ref|ZP_03697003.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224604349|gb|EEG10523.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 221

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                +   KG     ++T      +D  +   FD            +L +    L  + 
Sbjct: 83  QKAAMEQATKGTGVSVSQTADNQLKLDIPSDVSFDSGRYDIKSNMRPILDRFATTLNQNP 142

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTD++        N  LS++RA +    L+  GV+ +RI  I G        
Sbjct: 143 VTTVKIIGHTDST---GSDAINGPLSVNRASATRSYLVARGVAMNRI-SIDGRGSSEPIA 198

Query: 323 AS--DPMNSANRRIDILV 338
           ++      + NRR++I V
Sbjct: 199 SNGTAAGRAKNRRVEIFV 216


>gi|299770678|ref|YP_003732704.1| OmpA/MotB domain protein [Acinetobacter sp. DR1]
 gi|298700766|gb|ADI91331.1| OmpA/MotB domain protein [Acinetobacter sp. DR1]
          Length = 255

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 39/186 (20%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +    D++ +I   +    PP      L++ + ++               + D+ +K  +
Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E                  F+  S++       +L ++   L       + I GHTD+ 
Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAVALNKVGGKKVKIVGHTDS- 192

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                A  N +LS DRA +    L+   +  D +S   G    +    +        NRR
Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHLSA-EGLGSSKPVADNTSPEGRKKNRR 249

Query: 334 IDILVE 339
           I+  V 
Sbjct: 250 IEFTVL 255


>gi|170725705|ref|YP_001759731.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169811052|gb|ACA85636.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 190

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +  +     V  +I   L      + + GHTD+         N  LS  RA +  
Sbjct: 88  FEFAQAEVMFAQWQVFTRIKRFLQEHDVKLCLLGHTDSV---GAEAGNMALSHLRALNVK 144

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           ++L+   G + DR  ++ G A      ++D     + NRR+++ VE 
Sbjct: 145 RILVDDLGFNPDRF-QVKGMADTHPVASNDFPEGRAMNRRVELFVEP 190


>gi|322507807|gb|ADX03261.1| OmpA/MotB [Acinetobacter baumannii 1656-2]
 gi|323517407|gb|ADX91788.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 397

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   +++A   +   Q ++  +S++ + L A +   
Sbjct: 219 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 277

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   +   + + GHT
Sbjct: 278 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 331

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G    +    +        
Sbjct: 332 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 387

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 388 NRRIEFSV 395


>gi|256846250|ref|ZP_05551707.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|256718019|gb|EEU31575.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
          Length = 191

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 62  TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 118

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 119 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 176


>gi|86134861|ref|ZP_01053443.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85821724|gb|EAQ42871.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 234

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR+ + AKKI + + G            E    GI+++  D+ +   FD + S    ++ 
Sbjct: 81  KRMDEQAKKIETEVPGA---------KVERVDDGIVVT-FDENSGVYFDTNKSNINTKSQ 130

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L ++ +V     +  I + GHTD +     A  N  LS  RA S    L+  G++  R
Sbjct: 131 QTLDRLAKVFLEFPDTKILVVGHTDNT---GNADYNLTLSEKRAKSVTNYLISDGIASPR 187

Query: 309 ISKI-SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
              +  G A  +   ++    + NRR+++ +   +
Sbjct: 188 FQTLWYGEAQPKYDNSTAEGRAKNRRVNVAIVPNE 222


>gi|254473994|ref|ZP_05087387.1| OmpA family protein [Pseudovibrio sp. JE062]
 gi|211956883|gb|EEA92090.1| OmpA family protein [Pseudovibrio sp. JE062]
          Length = 220

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++      TR G  I +    N   F    +      + VL  +  V     +  +++
Sbjct: 90  QQLQSSGVSVTRNGNQIVLN-MPNDVTFAVGQATLSSRAMQVLNSVALVAKEFPQTRLNV 148

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GHTD +     A+ N +LS  RA S    L   GV+  RIS  +G+         A++ 
Sbjct: 149 YGHTDNT---GSAQFNLQLSQRRADSVSNYLFNQGVNGARISA-AGYGLTSPIASNATEA 204

Query: 327 MNSANRRIDILV 338
             + NRR++I++
Sbjct: 205 GRAQNRRVEIIL 216


>gi|220933311|ref|YP_002512210.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994621|gb|ACL71223.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 218

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G     TR G  + I++      FD +      E   VL  + +VL    +  I + G
Sbjct: 90  LEGTGVSVTRDGDNL-ILNMPGNITFDVNRDEVKSEFYPVLNSVAKVLKKYDKTAIEVAG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++        N  LSL RA S    L+  G+   RI+ I GF  HR    ++     
Sbjct: 149 HTDST---GTVEHNMALSLRRADSVAGYLLGQGIQNVRIATI-GFGPHRPIADNNTAQGR 204

Query: 329 SANRRIDILVED 340
           S NRR+++ +  
Sbjct: 205 SLNRRVELTLIP 216


>gi|50956519|gb|AAT90766.1| conserved hypothetical protein [uncultured proteobacterium QS1]
          Length = 372

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 229 IDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           +   +  +FD  S+   P  T V++  +  + A S  +I I GHTD +     A  N ++
Sbjct: 251 VQLDSLSLFDAGSTELKPGSTKVLINALANIKAQSGWLIEIVGHTDTT---GNAEQNLQI 307

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           S  RA +    + + G        + G A  +   ++D     +ANRR+DI
Sbjct: 308 SYARASAVRDWMQRMGDIPSNCFVVQGAAGSQPITSNDTASGRAANRRVDI 358


>gi|329946279|ref|ZP_08293873.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527571|gb|EGF54566.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 416

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281
           G +I++ D     +FD  SS    E    L  +  VL  S    + ++GHTD+    +  
Sbjct: 297 GTVITLEDS---VLFDFGSSDLRSEASTTLTNLATVLKDSKAPKVQVQGHTDSV---SDD 350

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333
             N  LS  RA +    L   GV+   I  + G+   R    +       +P     NRR
Sbjct: 351 ASNQTLSEQRAKAVTDALTSDGVTAA-IESV-GYGETRPVAPNESSDGFDNPAGRRLNRR 408

Query: 334 IDILV 338
           +++ V
Sbjct: 409 VEVFV 413


>gi|253998106|ref|YP_003050169.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253984785|gb|ACT49642.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 170

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F  T  G  +S  D     +FD + ++    +   +QK+ + L     + + I G
Sbjct: 45  LKEQGFVHTDDGWALSFAD---KLLFDTNQAVLNDRSRGAVQKVSKALQSVGLDKMRIEG 101

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           H DA+        N  LS  RA++     ++SG+ +  I  + G        ++      
Sbjct: 102 HADAT---GRESYNVELSEQRAWAVADAFIQSGMPKSGII-VRGMGSQSPVASNATVAGR 157

Query: 329 SANRRIDILVED 340
           + NRR+ I+V  
Sbjct: 158 AENRRVSIIVVT 169


>gi|227538390|ref|ZP_03968439.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241772|gb|EEI91787.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 438

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           K V+ E  +  +  +I D      FD   S   P +   L ++  +L      + + GHT
Sbjct: 318 KIVVTEADKKVVDEAIKDLE----FDLGKSTIRPTSYPSLDRVASLLIEKNFSLKLAGHT 373

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D +      + N RLS +RA +    L   G +  RI   +G+  ++    +        
Sbjct: 374 DNT---GSMQTNLRLSKERAEAVKAYLTSKGANPSRIEA-TGYGPNQPIATNATAEGRQQ 429

Query: 331 NRRIDILV 338
           NRR++  +
Sbjct: 430 NRRVEFTL 437


>gi|162145880|ref|YP_001600338.1| outer membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543812|ref|YP_002276041.1| OmpA/MotB domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784454|emb|CAP53984.1| Outer membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531489|gb|ACI51426.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 380

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   ++       ++    +    + T  I + G+TD   A P    AR N  LS+ R
Sbjct: 272 FFDWDQAVLTDRARAIVATAAQASTRTQTTRIEVDGYTDNSAAHPGPRGARYNMALSVRR 331

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +    L++ GV    I  + GF      +A+ P      NRR++I++
Sbjct: 332 AQAVQAELIRDGVPGTAID-VHGFGETHPLVATGPNTREPQNRRVEIIL 379


>gi|183220368|ref|YP_001838364.1| hypothetical protein LEPBI_I0964 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910483|ref|YP_001962038.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167775159|gb|ABZ93460.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778790|gb|ABZ97088.1| Hypothetical protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 229

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             + G +    V+    E     +   +I       F    S   P+   ++ K+G+ + 
Sbjct: 86  EEVGGSLVAKGVELKRIEDDEKRLRELLIIIDGDVAFPSGKSTLTPKAKELIAKVGDAME 145

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318
              E    I GHTD+         N +LS +R+ S  + L +   ++E+R  ++ G+A  
Sbjct: 146 AYPETNCRIGGHTDSV---GAFSMNLKLSKERSQSVKRELKLVHKIAEERFKEVDGYADQ 202

Query: 319 RLKIASDPMNSANRRIDILV 338
           +  + +      NRR +I V
Sbjct: 203 QKIVDTMLAEKKNRRTEIYV 222


>gi|170720328|ref|YP_001748016.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169758331|gb|ACA71647.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 230

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+   P     L  I   L     +  +S+ GHTD+         N  LS  RA+S
Sbjct: 126 FEFDSARLTPADKERLNTISTRLKQEAPSARLSVTGHTDSV---GSDSYNQNLSERRAHS 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
               L++SGV       + G    +    +   +    NRR +I +E 
Sbjct: 183 VTDYLVESGVPRASFVSVVGAGETQPVADNATADGRSMNRRTEIKIER 230


>gi|93006911|ref|YP_581348.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
 gi|92394589|gb|ABE75864.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
          Length = 217

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++  A+++   ++G        GV  +    G  I ++    +  F    +         
Sbjct: 74  MERQARQLEQQMAGT-------GVTVKPNANG-NIDLV-MPGSITFSFDDATLNNSFKPT 124

Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+   +   +   I+I GHTD+   +     N +LS DRAY+    L   GV+ +RI+
Sbjct: 125 LDKLAATMNEYNQNTITIAGHTDS---KGTDAYNMKLSRDRAYAVANYLSARGVASNRIN 181

Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
            +  +   R    ++       NRR+++ V   Q
Sbjct: 182 -VVAYGESRPVADNNSEFGRQQNRRVELTVNAPQ 214


>gi|260885301|ref|ZP_05734718.2| lipoprotein PG3 [Prevotella tannerae ATCC 51259]
 gi|260852896|gb|EEX72765.1| lipoprotein PG3 [Prevotella tannerae ATCC 51259]
          Length = 234

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           + +  +TG+    +   +  +F     +        L    + L      + + G+TD  
Sbjct: 90  VIKDDKTGLTYVKVTFPSGLLFQTGQDVLSSSARNDLATFAKNLTS-DMDLYVYGYTDNQ 148

Query: 276 PFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328
            +R  +       N  LS  RA S    L  +G+S  ++ ++ GF       ++D     
Sbjct: 149 GWRGASASESMNKNQVLSEQRANSVSSYLRSNGISSSQMKEVKGFGESNPVASNDSSTGR 208

Query: 329 SANRRIDILVEDRQ 342
             NRR+++ V   +
Sbjct: 209 EQNRRVEVYVMPSK 222


>gi|215433411|gb|ACJ66671.1| OmpA domain protein [Myxococcus fulvus HW-1]
          Length = 615

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
                F+ + +     +  +L  +  V+    E+  + +  HTD   F +    N RLS 
Sbjct: 496 MGKVFFEPTQARIQKRSFELLDWVARVIREHPEIPLVVVGAHTDDRGFPDA---NRRLSQ 552

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            RA +  Q L+   ++ +R+  + G+   R   ++   N    NRR++ L+ D Q
Sbjct: 553 ARAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENNRRVEFLLADPQ 606


>gi|323345464|ref|ZP_08085687.1| lipoprotein PG3 [Prevotella oralis ATCC 33269]
 gi|323093578|gb|EFZ36156.1| lipoprotein PG3 [Prevotella oralis ATCC 33269]
          Length = 229

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             K+++  +  V +  V+ V   T   G+    +   +  +F  + +     +   L K 
Sbjct: 74  MDKVAAETAAQVKNAKVEQV---TDANGLKAVKVTFDSGILFATNKAELNQSSKNELAKF 130

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL  + +  + I GHTD++    I   N  LS  RA S    L   GVS  +   + G
Sbjct: 131 STVLKKNADCYVDIYGHTDSTGNDGI---NIPLSNQRAQSVVAYLENCGVSASQFKNVVG 187

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
                   ++D  +    NRR+++ +   Q 
Sbjct: 188 KGSSDPVASNDTKSGRQLNRRVEVYMYASQA 218


>gi|209809406|ref|YP_002264944.1| putative outer membrane protein, OmpA family [Aliivibrio
           salmonicida LFI1238]
 gi|208010968|emb|CAQ81375.1| putative outer membrane protein, OmpA family [Aliivibrio
           salmonicida LFI1238]
          Length = 185

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
              S+++  A+K    ++         L+ ++ D+I  G + +         I+      
Sbjct: 19  QSTSEDETTAIKSTPTIESFITYHHDELNAIITDDI--GSVAQVNDE----IIVLLNGDT 72

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S +   E+   L ++ ++L +     + I GHTD+       + N  LS  RA S
Sbjct: 73  SFDSGSIVIKSESKDALTQLAQLLNNKPRSEVFIAGHTDS---SGSKQFNTSLSNKRANS 129

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
              +L + GV  +RI+   GF       +  +      NRRI+I +  
Sbjct: 130 VLALLEQKGVDANRIN-TYGFGEAEPIASNMNANGRKKNRRIEIRITP 176


>gi|77457448|ref|YP_346953.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77381451|gb|ABA72964.1| putative OmpA family protein [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276
           E      +I++ D     +FD   S   P     L  + + L ++  V I + GHTD+  
Sbjct: 120 EPAPQTEVITLND-AGNVLFDFDKSDLKPAAKSQLDTLMDKLRNADVVSIKVIGHTDS-- 176

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRI 334
            +     N  LS  RA S  + L+  G++ ++++   G           +D   + NRR+
Sbjct: 177 -KGSDAYNQALSERRASSVAEYLLSQGLAPNKLTS-EGRGESEPVADNNTDEGRAQNRRV 234

Query: 335 DILV 338
           ++ +
Sbjct: 235 ELHI 238


>gi|149194324|ref|ZP_01871421.1| Thrombospondin type 3 repeat:OmpA/MotB [Caminibacter mediatlanticus
           TB-2]
 gi|149135499|gb|EDM23978.1| Thrombospondin type 3 repeat:OmpA/MotB [Caminibacter mediatlanticus
           TB-2]
          Length = 209

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +           ++K+ E+L  +    I + GHTD     +    N +LS  RA + 
Sbjct: 101 FDFNKWNVKKIYYPQIKKVAEILKANPNLKIEVAGHTDN--IGSAKY-NLKLSQKRAEAV 157

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            ++L+    ++ +RI    G+      + +      + NRR++I+
Sbjct: 158 KKILVNVYHINPNRIVA-RGYGEKYPLVPNTTSTNRALNRRVEII 201


>gi|237740939|ref|ZP_04571420.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|229430983|gb|EEO41195.1| outer membrane protein [Fusobacterium sp. 4_1_13]
          Length = 147

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 18  TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 74

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 75  LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 132


>gi|294638308|ref|ZP_06716561.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
 gi|291088561|gb|EFE21122.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
          Length = 219

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R++   N RLS  RA S    L+  GV+  RI +  G       
Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALITQGVAAGRI-RTIGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|323525290|ref|YP_004227443.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323382292|gb|ADX54383.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 168

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              ++ N   G+       G+ + +     T +FD + S   P+   V+ +   +L  S 
Sbjct: 27  DTEMSLNKAAGIEVAPVANGVAVKL---PETALFDFNKSEVRPDASAVVDRSAVLLKRSK 83

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           + I + G+TD      +   N +LS  RA +    L+  GV  +RI +  G A++    +
Sbjct: 84  KPIIVEGYTDN--VGTLEY-NQQLSEARAVAVGYALVARGVPMERI-RTKGNAYNNPVAS 139

Query: 324 SDP--MNSANRRIDILV 338
           +D     + NRR +I+V
Sbjct: 140 NDTPEGRALNRRTEIVV 156


>gi|255067633|ref|ZP_05319488.1| membrane protein, OmpA family [Neisseria sicca ATCC 29256]
 gi|255048107|gb|EET43571.1| membrane protein, OmpA family [Neisseria sicca ATCC 29256]
          Length = 546

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           ++I++    +  +F+             ++  +  + +H    I + GHTD         
Sbjct: 429 VVITL---DSLALFETGQFELKNNANKALIGALKAIESHPDTRILVEGHTDNV---GNPV 482

Query: 283 DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
            N +LS  RA S    L+  S V E R   + G    +    +      + NRR++I++ 
Sbjct: 483 SNQQLSEKRAQSVKDWLVISSNVPESRFE-VKGLGDTKPIADNQTEEGKAKNRRVEIILI 541

Query: 340 D 340
            
Sbjct: 542 P 542


>gi|34558375|ref|NP_908190.1| putative flagellar motor protein [Wolinella succinogenes DSM 1740]
 gi|34484094|emb|CAE11090.1| HYPOTHETICAL PROTEIN-PUTATIVE FLAGELLAR MOTOR PROTEIN [Wolinella
           succinogenes]
          Length = 261

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 21/231 (9%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
            +    +  L  ++      + +E   +     S     L       +     E  F P 
Sbjct: 28  MSLLLTFFILLLSMATFDAKKLTEAEGSIQGALSILPGGLKTEPGKNRIQQLAEITFTPE 87

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
            ++E           Q++AK      S + + +            G ++ +       +F
Sbjct: 88  SAEEINRVESLFMEFQEMAKVAEGPSSAVGSGS-----------EGFIVRL---PAALLF 133

Query: 238 DKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR--GHTDASPF-RNIARDNWRLSLDRAY 293
            +        +  + ++++ E++    + + +   GHTD  P      +D   L+  RA 
Sbjct: 134 KEGGIEVENSDGFLFVKRMAEIVNRLPKDVHVEVRGHTDTLPLPAQAPQDKLELTAKRAL 193

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSA-NRRIDILVEDRQ 342
           S  ++L+K G+   RI+ + G         A  P     NRR+DI +  ++
Sbjct: 194 SVSKLLVKEGIDPKRITTV-GRGDQDPLTHARTPEAQESNRRVDIYLYPKE 243


>gi|332667773|ref|YP_004450561.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336587|gb|AEE53688.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 603

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+I LP +  +L ++  ++       + I+GHTD+         N  LS  RA S 
Sbjct: 499 FKTGSAILLPSSKKILDQVAALMNRYPAYKLDIQGHTDSQ---GKEDFNLSLSKKRAKSC 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           Y  L+   +   RI    GF   +   ++        NRR++ +++ +Q
Sbjct: 556 YDYLLLRSIDAKRIEH-EGFGETKPIASNKTPQGRVQNRRVEFVLDVKQ 603


>gi|146308664|ref|YP_001189129.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145576865|gb|ABP86397.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 218

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 213 KGVLFETTRTGILISII---DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAH-ST 263
           +      T  G  + +    D     M     F  +S+         L  +  V    + 
Sbjct: 83  QEAKLRQTLQGTGVQVQRNGDDLKLIMPGNITFASNSADISSSFYPTLNSLVLVFKEFNK 142

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321
             ++I GHTD++        N  LS  RA S    L  +GV   RIS   G    +    
Sbjct: 143 NGVNIVGHTDST---GSQELNQSLSSRRAQSVANYLTANGVPGQRISA-YGAGPSQPIAS 198

Query: 322 IASDPMNSANRRIDI 336
            A+D   + NRR++I
Sbjct: 199 NATDAGRAQNRRVEI 213


>gi|90022262|ref|YP_528089.1| OmpA family protein [Saccharophagus degradans 2-40]
 gi|89951862|gb|ABD81877.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 225

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G   +  R G  + ++       FD +      +   VL  +  VL    +  I + G
Sbjct: 97  LQGTGVQVRREGNNLFLV-MPGNITFDTAQYSIRSQFYEVLDSVAVVLKKYDKTAILVSG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD    R  +  N  LS  RA S    LM+ GV+  R++ + G+ +     ++D     
Sbjct: 156 HTDN---RGSSDYNQTLSEQRAGSVKAYLMQKGVAAGRVNSV-GYGYRYPVASNDSAAGR 211

Query: 331 --NRRIDILVEDRQ 342
             NRR+++ +E  +
Sbjct: 212 EQNRRVELKLEPIE 225


>gi|330982864|gb|EGH80967.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 137

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIR 269
           +   +  + T  G L++  D     +FD + +   P     + K+   L  + +  + + 
Sbjct: 1   MKNSLNAKQTERGTLVTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVE 56

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G+TD++     A  N  LS  RA S    L++ GV   RI  +  G  +     +S+   
Sbjct: 57  GYTDST---GSASYNQSLSERRANSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGR 113

Query: 329 SANRRIDILVED 340
           + NRR+++ + +
Sbjct: 114 AMNRRVEVTISN 125


>gi|225025598|ref|ZP_03714790.1| hypothetical protein EIKCOROL_02500 [Eikenella corrodens ATCC
           23834]
 gi|224941636|gb|EEG22845.1| hypothetical protein EIKCOROL_02500 [Eikenella corrodens ATCC
           23834]
          Length = 183

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           + ++ +   N   P   ++          L      +S+  S L +    +G     T T
Sbjct: 1   MPQTASDASNASAPAADEQASAVASASSALSAQGNSLSAQGSNLSS----QGSGLSATET 56

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           G  I I    +  +FD   +   PE    LQK  +++      VI I GHTD+   +   
Sbjct: 57  GFNIEIN-LSSDVLFDFDKAELKPEADADLQKAADIIRQKGQGVILITGHTDS---KGSD 112

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRR 333
             N RLSL RA +        G+ ++   ++ G    R    +       +P   + NRR
Sbjct: 113 AYNQRLSLARAQAVKNWFEAKGLQQN--YQLEGLGATRPIAPNTHPDGSDNPEGRAQNRR 170

Query: 334 IDILV 338
           ++I+V
Sbjct: 171 VEIIV 175


>gi|323498433|ref|ZP_08103429.1| outer membrane protein A precursor [Vibrio sinaloensis DSM 21326]
 gi|323316506|gb|EGA69521.1| outer membrane protein A precursor [Vibrio sinaloensis DSM 21326]
          Length = 322

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   PE+  +L ++   +    +  + + G+TD       A  N +LS  R
Sbjct: 210 DSGSFALNSTELKPESKQILNELVVFMNEYPQANVEVVGYTDT---SGAAAYNQKLSEKR 266

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L   G+   RI+ + G   +    +++       NRR++I V
Sbjct: 267 AQSVSDALQAEGIDASRIT-VRGEGENNPIASNETKEGRVQNRRVEITV 314


>gi|253997300|ref|YP_003049364.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983979|gb|ACT48837.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 217

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 16/210 (7%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +  +E  K +    +           +               +   +      KR ++  
Sbjct: 20  ANMTETQKGTAKGAAIGAGAGAVVGAIAGKGKGAAIGAAVGAAAGAVAGNVWTKRQEEQK 79

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++    +G          + +T    + +   D  +   FD   +        VL    
Sbjct: 80  RQMEEATAGTGVG------VTQTADNRLKL---DIPSDISFDVGRADIKANFRAVLDTFA 130

Query: 257 EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L ++    +++ GHTD +    +      LS++RA S    ++  GV   RI+ I G 
Sbjct: 131 TSLVNNPASNVTVIGHTDNTGSDAVNNP---LSVNRAASVRDYVVARGVQHSRIT-IEGR 186

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343
                 +A+D     + NRR++I V +  G
Sbjct: 187 GAREPLVANDTAANRAKNRRVEIFVAEPAG 216


>gi|237728863|ref|ZP_04559344.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2]
 gi|226909485|gb|EEH95403.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2]
          Length = 220

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             ++G     TR+G  I I++  N   FD SS+   P     L  +  VL    +  +++
Sbjct: 90  EKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNV 148

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            G TD++        N RLS  RA S    L+  GV+ +RI +  G        ++    
Sbjct: 149 LGFTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTQGMGPANPIASNSTAE 204

Query: 329 --SANRRIDILVEDRQ 342
             + NRR++I +   Q
Sbjct: 205 GKAQNRRVEITLSPIQ 220


>gi|307637506|gb|ADN79956.1| Flagellar motor rotation protein [Helicobacter pylori 908]
 gi|325996095|gb|ADZ51500.1| Flagellar motor rotation protein [Helicobacter pylori 2018]
 gi|325997691|gb|ADZ49899.1| Flagellar motor rotation protein [Helicobacter pylori 2017]
          Length = 257

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|238918002|ref|YP_002931516.1| outer membrane lipoprotein [Edwardsiella ictaluri 93-146]
 gi|238867570|gb|ACR67281.1| inner membrane lipoprotein YiaD [Edwardsiella ictaluri 93-146]
          Length = 219

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R++   N RLS  RA S    L+  GVS  RI +  G       
Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRI-RTIGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 198 ATNSTAAGKAQNRRVEITL 216


>gi|307826004|ref|ZP_07656218.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307732979|gb|EFO03842.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 266

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 12/258 (4%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            Q P + S  ++I L +   +          S  + +   +   N   +     ++    
Sbjct: 3   PQTPFQPSWLSRIPLVLLSALMTACAPSVNMSLERARSDYQQAANDPAVKADASADLFAA 62

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                  +          E             L++        K+  ++L+ K    +  
Sbjct: 63  EKLLQKAETSWQEDEDSEEIDHLSYLTSRKVDLARATASQTASKRAFEELSAK-RDEIRL 121

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTE 264
              D  +  +  +    GIL+++ D     +FD + S     ++  +  + E L  H+  
Sbjct: 122 KARDAEIARLKAKKVPQGILVTLGD----VLFDTARSDLKAGSLQNIYPLVEYLKVHADT 177

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           ++ I GHTD       +  N +LS  RA +    L+ +GV+ +RI+   G         +
Sbjct: 178 MVKIEGHTDNQ---GSSDYNAQLSQRRAEAVRNFLVTNGVAPERITA-QGMGKDYPIATN 233

Query: 325 DPMNSA--NRRIDILVED 340
                   NRR+++ + D
Sbjct: 234 SSAAGRQQNRRVEVTITD 251


>gi|269137375|ref|YP_003294075.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202]
 gi|267983035|gb|ACY82864.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202]
 gi|304557476|gb|ADM40140.1| Outer membrane protein [Edwardsiella tarda FL6-60]
          Length = 219

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R++   N RLS  RA S    L+  GVS  RI +  G       
Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRI-RTIGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 198 ATNSTAAGKAQNRRVEITL 216


>gi|218660571|ref|ZP_03516501.1| outer membrane lipoprotein [Rhizobium etli IE4771]
          Length = 196

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD       P     L  +  VL       I + G
Sbjct: 66  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 124

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           HTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+   
Sbjct: 125 HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 180

Query: 329 SANRRIDILV 338
           + NRR++I +
Sbjct: 181 AQNRRVEIQI 190


>gi|146344294|ref|YP_001202150.1| hypothetical protein pQBR0404 [Pseudomonas fluorescens SBW25]
 gi|146188106|emb|CAM96436.1| hypothetical protein pQBR0404 [Pseudomonas fluorescens SBW25]
          Length = 220

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+   P     L  I   L       + I GHTD +   +   +N  LS  RA + 
Sbjct: 117 FATASADLQPAAFQGLSAIATALKDQKDLRLEITGHTDGT--GSRQFNN-VLSYARAQAV 173

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
            Q L  +GV   ++  + G                + NRR++I +  +QG
Sbjct: 174 AQYLYAAGVPA-QVIAVRGVGPSMPVATDATTQGRAQNRRVEIQI--KQG 220


>gi|313681736|ref|YP_004059474.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154596|gb|ADR33274.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 15/253 (5%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           PE  +  K  +   +  +                 ++++                  +T 
Sbjct: 10  PECPAGEKWAVPTADFFSLLLALFIALFAIASVNKEKIKAVKEEFVKIYDYAPAPQEITP 69

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
             +   +   + D   +                    K  +   +  +KI   L      
Sbjct: 70  VVDMVSENNPTPDATANAAGSAPVTDGGSLLVGAPPTKSTEAASEAIQKIQQDLKNASMG 129

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVI 266
           +       + +  G+L+ +     +  F  +++    E + + L+++ +++        I
Sbjct: 130 SGP----LDQSMDGVLLKL---PTSIPFKGANATIDNEELHLFLRRVTDIINTLPPTVDI 182

Query: 267 SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
           SIRG+TD  P       +DN  LS  RA +  + L+++GV+ +R+   +GF   +     
Sbjct: 183 SIRGYTDNQPLPPGAGYKDNIELSSRRAETVMRELIRNGVAPERL-STAGFGAAKPVAEN 241

Query: 323 ASDPMNSANRRID 335
            ++   + NRR++
Sbjct: 242 TTEENRAKNRRVE 254


>gi|71898965|ref|ZP_00681131.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|71731211|gb|EAO33276.1| OmpA/MotB [Xylella fastidiosa Ann-1]
          Length = 375

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + VL++  E+L    +  + + GHTD++     A  N +LS  RA   
Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           Y  L  +G+   R+    G+          +    + NRR ++ V++
Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375


>gi|260555512|ref|ZP_05827733.1| outer membrane protein [Acinetobacter baumannii ATCC 19606]
 gi|260412054|gb|EEX05351.1| outer membrane protein [Acinetobacter baumannii ATCC 19606]
          Length = 255

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +  Q+L +      S L  +   + ++       +   II+      F+  S++      
Sbjct: 117 QSFQNLVQPPYQLFSQLSVNQAEQKII----DDALKNRIIE------FESGSAVLTEAGQ 166

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L ++   L       + I GHTD+      A  N +LS DRA +    L+   +  D 
Sbjct: 167 KILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAVKNYLISKNIPADH 223

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           +    G    +    +        NRRI+  V 
Sbjct: 224 L-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255


>gi|197116786|ref|YP_002137213.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
 gi|197086146|gb|ACH37417.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
          Length = 459

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE    +  +G+ +         I GHTD     +    N  LS  RA + 
Sbjct: 228 FDIDKAEIRPEYRDEVATVGKFMKQYPTTTAVIEGHTDN--VGDPQY-NLDLSKRRAQAV 284

Query: 296 YQVLMKS-GVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339
              L+ + G+   R+ ++  G A       +D    ANRRI+ +++
Sbjct: 285 VDYLVDNYGIERSRLEARGFGMARPIATNNTDEGRQANRRIEAIID 330



 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    + K+GE +         I GHTD       +  N +LS  RA +A
Sbjct: 352 FDSGKADIKPQYRDEMAKVGEYMNKYPTTTAVIEGHTDNV---GGSDYNMKLSQRRAENA 408

Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
            Q L+++ G+ + R+S   G+ + R     ++    + NRRI+ +++
Sbjct: 409 VQYLVQNFGIDKSRLSA-KGYGYTRRIAYNSTPEGRAKNRRINAVID 454


>gi|332087513|gb|EGI92641.1| ompA family protein [Shigella boydii 5216-82]
          Length = 318

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           + I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 167 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 225

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 226 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 281

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 282 LGESQPAATNDTPQGRAVNRRVEISLVPR 310


>gi|254784323|ref|YP_003071751.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Teredinibacter
           turnerae T7901]
 gi|237683781|gb|ACR11045.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Teredinibacter
           turnerae T7901]
          Length = 373

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 216 LFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
             +    G  +++ +  +  +   FD  S++  PE    ++K+ + +A      + I+GH
Sbjct: 238 RLKVDDRGCPVTLSETISINLKVNFDSGSAVVKPEFFSEIRKVADFMAQYENTRVEIQGH 297

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD       A  N  LS  RA +   VL+   GV+  R+    G+   +           
Sbjct: 298 TDT---SCAAAYNKSLSQRRASAVAAVLISEYGVAASRVDA-RGYGEEQPIADESTAAGR 353

Query: 331 --NRRI 334
             NRR+
Sbjct: 354 LANRRV 359


>gi|149371103|ref|ZP_01890698.1| OmpA domain protein [unidentified eubacterium SCB49]
 gi|149355889|gb|EDM44447.1| OmpA domain protein [unidentified eubacterium SCB49]
          Length = 466

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 224 ILISIIDQRN----TPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFR 278
           I + I+DQ N    T +FD + S    E+   ++ + +++    T    I GH+D+    
Sbjct: 347 ITVEIMDQINEYSRTILFDTNKSTIRKESHAAIRSMIDIMNEYKTANFLIEGHSDS---S 403

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             A  N  LS  RA +    L   GV   R++   GF   R K ++        NRR+++
Sbjct: 404 GSASYNLELSKKRAAAVKTFLESKGVDASRLTS-EGFGETRPKASNSTAAGRQENRRVEV 462

Query: 337 LV 338
            +
Sbjct: 463 SL 464


>gi|71276570|ref|ZP_00652844.1| OmpA/MotB [Xylella fastidiosa Dixon]
 gi|71901217|ref|ZP_00683319.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|170730957|ref|YP_001776390.1| outer membrane protein [Xylella fastidiosa M12]
 gi|71162641|gb|EAO12369.1| OmpA/MotB [Xylella fastidiosa Dixon]
 gi|71729028|gb|EAO31157.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|167965750|gb|ACA12760.1| outer membrane protein [Xylella fastidiosa M12]
          Length = 375

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + VL++  E+L    +  + + GHTD++     A  N +LS  RA   
Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           Y  L  +G+   R+    G+          +    + NRR ++ V++
Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375


>gi|239832093|ref|ZP_04680422.1| OmpA family protein [Ochrobactrum intermedium LMG 3301]
 gi|239824360|gb|EEQ95928.1| OmpA family protein [Ochrobactrum intermedium LMG 3301]
          Length = 260

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G     TR G  I I++  ++  FD        +    L  +  VL   +  ++ + G
Sbjct: 129 LQGTGVSVTRNGDQI-ILNMPSSITFDTDQDQVKSQFYPTLNSVAIVLRKFNQTLVDVYG 187

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++        N  LS  RA S    L   G+   R   + G+   +    +      
Sbjct: 188 HTDST---GSVSHNQALSQRRAASVASYLGSQGIDPRRF-AVIGYGASQPVATNATPEGR 243

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   + 
Sbjct: 244 AQNRRVEIQISPLRA 258


>gi|146308665|ref|YP_001189130.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145576866|gb|ABP86398.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 222

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G +I +I       F   S+         L  +       +   I + G
Sbjct: 91  MQGTGVEVQRQGDVIQLI-MPGNITFATDSAEIASSFYAPLNNLANSFRQYNQNSIEVVG 149

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++   +       LS  RA S    L+  GV   R+    G    +   ++      
Sbjct: 150 HTDSTGSHSYNMS---LSQRRAQSVASYLIAQGVDGSRV-STRGMGPDQPVASNATAEGR 205

Query: 329 SANRRIDILVEDRQG 343
           + NRR+++ +    G
Sbjct: 206 AQNRRVEVTLRPLPG 220


>gi|56698398|ref|YP_168771.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680135|gb|AAV96801.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 221

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L  +    G+    T   +++S+    N   FD  SS   P     LQK+   
Sbjct: 82  LDKQAAELRQELANDGITITNTGDRLIVSV---PNDITFDTDSSTVRPGLRSDLQKVAAH 138

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       + + GHTD+      A  N  LS  RA +   +L   GV+ DRIS + G   
Sbjct: 139 LVRYPQSSVQVIGHTDSD---GEAAYNQGLSERRAGAVADILQAGGVTYDRISTL-GMGE 194

Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341
           +    ++      + NRR++I+V  R
Sbjct: 195 NSPIASNLTPEGKARNRRVEIVVIPR 220


>gi|313674297|ref|YP_004052293.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312940995|gb|ADR20185.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 665

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
           VADN     + E T+      + +      F+ +S +   +++ +L K+  V+  +    
Sbjct: 536 VADNNGCPEITEETKE----VLKEALEGIEFELASDVIRAQSLPILDKVVTVMQENPDYK 591

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GHTD          N  LS  RA +  + LM  G++  R+  + G+   +   ++D
Sbjct: 592 LKISGHTDNQ---GDDDANLLLSHKRAQATKKYLMDQGIAILRLDAV-GYGEMQPIESND 647

Query: 326 P--MNSANRRID 335
                + NRR++
Sbjct: 648 TAEGRAKNRRVE 659



 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  ++ I   +    L +   +L  + +  + I GHT   P   +  +N RLS +RA + 
Sbjct: 402 FVNNADIFRSDAYYELDRFASLLQSNPQMQVEIIGHTAQLP---LEAENDRLSYNRAKAV 458

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----RRIDILV 338
                K  V  DR+ +I G        ++  +   N      RI I +
Sbjct: 459 ADYFEKKNVHPDRL-RIKGAGQKLAFSSNMDVALKNGIELEDRITIKI 505


>gi|532658|gb|AAA99311.1| antigen [Treponema pallidum]
          Length = 416

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L   + D  +       T  G+ ISI        FD  S+   P     L+KI E+L  
Sbjct: 281 ELQETLKDLHMPDAKVRETEEGVTISI----ENVQFDADSASLAPSEYEKLRKIAELLRA 336

Query: 262 STEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             +  + + GH +    R   +D  R+S +RA    + L + GV +       G    + 
Sbjct: 337 FPDRELLVSGHAER---RGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQS 393

Query: 321 KIASDPMNSA--NRRIDILVEDR 341
              +D  +    NRR++I +  +
Sbjct: 394 IAPNDSEDGRRKNRRVEITIISK 416


>gi|13472165|ref|NP_103732.1| hypothetical protein mll2368 [Mesorhizobium loti MAFF303099]
 gi|14022910|dbj|BAB49518.1| mll2368 [Mesorhizobium loti MAFF303099]
          Length = 167

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-----IRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L +  + L      +S     + GHTDA+      R N  LS  R
Sbjct: 65  FALDSAQLDQTARAELDEFAKALKD--NRLSTFSFVVEGHTDAT---GPDRYNQDLSQRR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           A S    L  +GV   R+  I G      ++A +P +  NRR+++ +  
Sbjct: 120 AQSVAAFLEANGVESVRLEAI-GLGKSHPRVA-NPYDPVNRRVEMRIRT 166


>gi|323159967|gb|EFZ45936.1| ompA family protein [Escherichia coli E128010]
          Length = 250

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           ++I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 99  EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 157

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 158 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 213

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR++I +  R
Sbjct: 214 LGESQPAATNDTPQGRAVNRRVEISLVPR 242


>gi|300714997|ref|YP_003739800.1| outer membrane protein [Erwinia billingiae Eb661]
 gi|299060833|emb|CAX57940.1| Outer membrane protein [Erwinia billingiae Eb661]
          Length = 564

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I+   +  +FD   ++  P ++ +L   + ++ A    +I + GHTD++        N +
Sbjct: 426 IVRLDSLSLFDTGKAVLKPGSLKMLVTALVDIKARPGWLIVVAGHTDSTGNVLA---NQQ 482

Query: 287 LSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LSL RA +    +L  S VS      + GF   R    +D     + NRR++I +  +
Sbjct: 483 LSLTRADALRDWMLSTSDVSPT-CFAVQGFGASRPIATNDTPAGRALNRRVEISLVPQ 539


>gi|159025752|emb|CAO02050.1| outer membrane protein A [Bordetella trematum]
          Length = 165

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   PE   +L ++ +          I  GHTD+      A  N +LS+ RA +
Sbjct: 58  FFDFDKATLKPEGRQLLDQVAQQAKAINLETIIAVGHTDS--IGTEAY-NMKLSVRRADA 114

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDR 341
               L+  G+  +RI    G    +   ++      + NRR++I +V  R
Sbjct: 115 VKAYLVGQGIDPNRIY-TEGKGEAQPIASNKTAEGRARNRRVEIEIVGSR 163


>gi|152971688|ref|YP_001336797.1| hypothetical protein KPN_03169 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956537|gb|ABR78567.1| hypothetical protein KPN_03169 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 567

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             + +  +   +  +FD   +      T V++  +  + A    +I + G+TD +     
Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476

Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + N +LSL RA +    +L  S +       + G         +D     +ANRR++I 
Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-FFAVQGLGESHPAATNDTPEGRAANRRVEIS 535

Query: 338 VEDR 341
           +  R
Sbjct: 536 LVPR 539


>gi|300693692|ref|YP_003749665.1| outer membrane protein; ompa/motb domain [Ralstonia solanacearum
           PSI07]
 gi|299075729|emb|CBJ35033.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia
           solanacearum PSI07]
          Length = 280

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 78/254 (30%), Gaps = 19/254 (7%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P   +       +   +    +     +        R       + +  +  +  +  
Sbjct: 35  GAPGDPAPASAATPVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 94

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204
                  K L              +     +  +     +R++   D+A  + ++ +   
Sbjct: 95  NWTGNVQKILSPQIKQVNRGQLNIDGTQVAMHGDVQNEAQRQQLASDMATTLGASYTIKN 154

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           GL    + +  L + T    +I          F+  S+   P+   +L ++  VL     
Sbjct: 155 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 205

Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I I GHTD          N  LS  RA +    L+  G     ++ I G    +   A
Sbjct: 206 RKIEIVGHTDN---SGSRAMNLNLSQTRAETVKNYLISKGAEPGTLTAI-GVGPDQPVAA 261

Query: 324 S--DPMNSANRRID 335
           +  D   S NRRI+
Sbjct: 262 NTTDEGRSRNRRIE 275


>gi|218462138|ref|ZP_03502229.1| hypothetical conserved membrane protein [Rhizobium etli Kim 5]
          Length = 386

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--RNIARDNWRLSLD 290
           +F  +          ++  I  VL  +      I+I GHTD  P    N   +N RLS  
Sbjct: 237 LFQSARPELTKSFEPLVASIAAVLKQNAELIGGITITGHTDNVPLQASNPLSNNQRLSEA 296

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
           RA +   +L  SGV   ++    G A  +    +D     +ANRRI+
Sbjct: 297 RAATIASLLAASGVPTGQLKS-QGRAATQPLAGNDSREGRAANRRIE 342


>gi|207092500|ref|ZP_03240287.1| flagellar motor protein MotB [Helicobacter pylori HPKX_438_AG0C1]
          Length = 260

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + +I  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|182682319|ref|YP_001830479.1| OmpA/MotB domain-containing protein [Xylella fastidiosa M23]
 gi|182632429|gb|ACB93205.1| OmpA/MotB domain protein [Xylella fastidiosa M23]
 gi|307578598|gb|ADN62567.1| OmpA/MotB domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 375

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+ + VL++  E+L    +  + + GHTD++     A  N +LS  RA   
Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           Y  L  +G+   R+    G+          +    + NRR ++ V++
Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375


>gi|146276274|ref|YP_001166433.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554515|gb|ABP69128.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 642

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
            I  +       F+  S+   P     L  + EV        + I GHTD+         
Sbjct: 487 RIRRVLAGQKITFEPGSAEIDPSARGTLDGLAEVFKDCKGMPLEISGHTDSQ---GSEGG 543

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           N  LS  RA +    L    V   R+  + G+   R       +    ANRRI+  +   
Sbjct: 544 NKALSQARAEAVLMALQGRRVDVGRMKAV-GYGEERPIADNRDEAGREANRRIEFTLLGD 602

Query: 342 QG 343
            G
Sbjct: 603 DG 604


>gi|193215633|ref|YP_001996832.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089110|gb|ACF14385.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 398

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+I  + +I  ++ AH+    S+ GHTD+      A  N  LS  RA S 
Sbjct: 297 FDVGKATLRPESIGPINEIYSLMKAHADIKFSVEGHTDSD---GDASSNQTLSEQRAKSV 353

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L++ G+S DR+ K  GF   +    +D     + NRR++ +
Sbjct: 354 MDELIRMGISADRL-KFKGFGESKPVDTNDTPEGKANNRRVEFV 396


>gi|83646323|ref|YP_434758.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83634366|gb|ABC30333.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 483

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 97/294 (32%), Gaps = 10/294 (3%)

Query: 54  INATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
           I+     T +  ++ +    K L          Q+  ++S  N +         K   + 
Sbjct: 191 IDDLAPKTMEMAQEEYQLALKTLDADRTDTERAQSHAQKSLWNVMRAEYIADTVKYFDES 250

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
                ++   YQ+         N Q      N                D + ++   EN 
Sbjct: 251 DFDEEDKVLWYQQQLATAVGPINQQLPFDQPNKEVVRQVNANIQGLMVDRDSALLALENA 310

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
               +           ++ ++  +K + T    V  ++      +  R    + I     
Sbjct: 311 KTREMRVASEKDELMAQQQREDQRKQAITAKFAVVQSLFTDKEADVYRQKDNVLIRAHGF 370

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F    S    E   ++ KI E +       + + GHTD    R     N  LS  RA
Sbjct: 371 N--FPSGKSEIQGENFALVNKIIEAVKEFPNAQVVVSGHTDN---RGSTELNQGLSQQRA 425

Query: 293 YSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
               ++L + G +  D+I+ + G+   R    +D M   + NRR+++L+ +  G
Sbjct: 426 EEVAKMLNEIGRIPSDKITAM-GYGEQRPVSTNDTMEGRADNRRVEVLIVNEGG 478


>gi|307293986|ref|ZP_07573830.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306880137|gb|EFN11354.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 226

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239
           + +K L      ++    G   D   K +  +T  +G+ + I D  N  +       F  
Sbjct: 60  RTEKILGAGIGAVAGAGIGAYMDAQEKKLREQTAGSGVDV-IRDGDNLVLRMPSGITFAT 118

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            SS   P+    L  +  VLA   +  I + GHTD+         N  LS  RA +    
Sbjct: 119 DSSAVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDS---DGTDVYNQGLSERRAQAVGDY 175

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           L   GV   RI    GF   +   ++      ++NRR++I +
Sbjct: 176 LTSHGVQSARI-ATRGFGETQPIASNATAEGKASNRRVEIKI 216


>gi|319763880|ref|YP_004127817.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|330823856|ref|YP_004387159.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317118441|gb|ADV00930.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
 gi|329309228|gb|AEB83643.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 171

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD +S     E   +L ++G  L       + + GH D          N RLSL R
Sbjct: 64  GKLLFDFNSDAMTGERREMLVRMGHALVGVGVRALRVEGHADDQ---GSPDYNERLSLRR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           A +  QVL ++G+  +RI  I G+   R  +   S+     NRR+ ++V
Sbjct: 121 AQAVAQVLAEAGIPRERID-IRGYGASRPLVIGTSEAARQENRRVALIV 168


>gi|260549981|ref|ZP_05824196.1| OmpA family protein [Acinetobacter sp. RUH2624]
 gi|260406973|gb|EEX00451.1| OmpA family protein [Acinetobacter sp. RUH2624]
          Length = 472

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  +        ++          +   ++++   +   Q ++  ++++ + L + +   
Sbjct: 294 GDKITLKAGDAAALEALTAKVKALVPHTEVVSAAPQTAEQSVSNSLTASQTALGSID-PN 352

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            V        + + II+      F   SS    +   +L +   +L   T   +++ GHT
Sbjct: 353 NVDVNALVKALNLQIIN------FASGSSEIPADNKAILDQAATLLNKVTSVKLNVGGHT 406

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D++     A  N  LS  RA +    L+  GV   ++    G         +        
Sbjct: 407 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-QGHGSENPVAENTTEEGRFK 462

Query: 331 NRRIDILV 338
           NRRI+  V
Sbjct: 463 NRRIEFSV 470


>gi|294787848|ref|ZP_06753092.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
 gi|294484141|gb|EFG31824.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
          Length = 217

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G  I +    N   F              L    + LA   E  ISI GHTD++
Sbjct: 93  VEVQREGNQIKLTMPENVT-FATGRYDLSVNAQNSLNGAAQTLATYNETTISIIGHTDST 151

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                   N  LS +RA +  Q L+  GVS  RI   +G    +   ++      + NRR
Sbjct: 152 ---GNDSINIPLSQNRANAVAQYLISKGVSSSRI-STAGHGASQPIASNSTAEGRAQNRR 207

Query: 334 IDILVEDR 341
           ++IL+  +
Sbjct: 208 VEILINPQ 215


>gi|71909465|ref|YP_287052.1| surface antigen protein [Dechloromonas aromatica RCB]
 gi|71849086|gb|AAZ48582.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Dechloromonas
           aromatica RCB]
          Length = 221

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                +   +G     T+T      +D  +   FD       P    VL +    L  + 
Sbjct: 83  QKAAMEQATQGTGIGVTQTADNQLKLDIPSDLSFDSGHYDINPALHAVLDRFASTLIQNP 142

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTD      I      LS++RA +    L   GV+ +RI  I G   H    
Sbjct: 143 VTHVRIVGHTDNVGGDAINNP---LSVNRAAATRDYLASRGVASNRI-SIDGRGSHEPIA 198

Query: 323 ASDP--MNSANRRIDILV 338
            +      + NRR++I V
Sbjct: 199 DNSTPAGRAKNRRVEIFV 216


>gi|110638110|ref|YP_678319.1| OmpA family peptidoglycan-associated lipoprotein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280791|gb|ABG58977.1| peptidoglycan-associated lipoprotein, OmpA family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 640

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   PE++  L K+ ++L H+    I + GHTD+         N  LS +RA +
Sbjct: 534 FFDVDKATLRPESVQELDKLVDILRHNPNLKIELSGHTDS---DGNDDHNMVLSDNRAKA 590

Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               L+ K G++ +R++   G+   +    +D       NRR ++ +   +
Sbjct: 591 VVDYLIKKGGINPNRLTW-KGYGETKPIELNDTPEHKQQNRRTEVKILSNE 640


>gi|332666790|ref|YP_004449578.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335604|gb|AEE52705.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 495

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S      +   L  + E +       I + GHTD          N  LS  RA + 
Sbjct: 392 FATGSEKLTGVSRYELDNLVEAMKEKKGLKIQLAGHTDDI---GEDAQNLALSQKRADAV 448

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
            + L+  GV   R+S   GF   +   A+  D   + NRR +
Sbjct: 449 MKYLVSKGVDASRLSA-KGFGESQPVAANDSDDNRAQNRRTE 489


>gi|332297510|ref|YP_004439432.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332180613|gb|AEE16301.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 469

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 14/149 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   ++  V +N V  V      TGI ISI + +    F   S+  LP   + L  I E+
Sbjct: 308 VMRDVAQFVYENKVPDVTITDDYTGIQISIQNLQ----FIADSAELLPAEKLRLDTIAEL 363

Query: 259 LAHST----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           L   T      + + GHT +       +   +LS++RA +    + + GV     +   G
Sbjct: 364 LKTVTADNEFSVIVEGHTASVGKPAGEQ---QLSIERAQAIISAMAQRGVDTGTFTS-KG 419

Query: 315 FAHHRLK--IASDPMNSANRRIDILVEDR 341
           F         A+    + NRR++IL+  +
Sbjct: 420 FGGTVPVGDNATPEGRAQNRRVEILIVPK 448


>gi|209965863|ref|YP_002298778.1| outer membrane protein OmpA (probable proton motor MotY)
           [Rhodospirillum centenum SW]
 gi|209959329|gb|ACI99965.1| outer membrane protein OmpA (probable proton motor MotY)
           [Rhodospirillum centenum SW]
          Length = 281

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 13/228 (5%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
             Q     +        + S+     +  +   +   +   ++   E    +        
Sbjct: 52  AAQAPVAFQEAERSVQRAQSRLGSAGEAEMEHLTYLAEVRLQTARAEAQAARFREERQSL 111

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNTP 235
           +++ + +    ++    LA+ ++      +   ++ ++      T  G ++++ +     
Sbjct: 112 VAQRESILRSAREDQLALARTVAEEDRQRIQQLESQLQQYQARETEAGTVLTLSNIN--- 168

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S+   P     L+ + E L    +  + I GHTD+      A  N  LS  RA +
Sbjct: 169 -FDLDSATLSPGDRQRLRPLVEYLRSQPDRAVLIEGHTDSQ---GPAAYNEELSQRRAEA 224

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
               L+  G+   RI+   G        +++       NRRI++ VE+
Sbjct: 225 VRDFLVDQGIQAARIT-TRGLGEGVPVASNETQAGRLQNRRIEVTVEN 271


>gi|88810246|ref|ZP_01125503.1| OmpA-OmpF family porin [Nitrococcus mobilis Nb-231]
 gi|88791876|gb|EAR22986.1| OmpA-OmpF family porin [Nitrococcus mobilis Nb-231]
          Length = 230

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  I I++  N   FD  SS   P     L  +  VL   
Sbjct: 94  VQEAKLREKMQGTGVSVTRQGDAI-ILNMPNNVTFDIDSSSLKPAGANTLTGVAMVLKEY 152

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ GHTD++        N +LS  RA S    L+  GV+ +RI + +G       
Sbjct: 153 DQTGVNVVGHTDST---GGHAHNMKLSKKRADSVASSLIIQGVAANRI-RTAGVGPDDPI 208

Query: 322 IASDP--MNSANRRIDILVED 340
            ++      + NRR++I +  
Sbjct: 209 ASNSTAEGRAQNRRVEITLTP 229


>gi|262042941|ref|ZP_06016085.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039658|gb|EEW40785.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 568

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVV 251
           + +   +   + G V        +       I +      +  +FD    +  P  T  +
Sbjct: 400 EQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTKRL 454

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +  + ++ A    +I + GHTD+       + N  LSL RA S    +  +G   D    
Sbjct: 455 VSSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSCFA 511

Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           + G+   R    +      + NRR++I +  +
Sbjct: 512 VQGYGESRPIATNGTPEGRALNRRVEISLVPQ 543


>gi|187923017|ref|YP_001894659.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187714211|gb|ACD15435.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 217

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272
           G    I +Q +  +         FD +S    P    VL ++ + +  + E+++ + GHT
Sbjct: 85  GTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELVAQVVGHT 144

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330
           D++        N  LS++RA S    L + GV+  R+S   G    +    ++     +A
Sbjct: 145 DST---GQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA-QGLGQTQPIADNNTEAGRAA 200

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 201 NRRVEIYL 208


>gi|308184601|ref|YP_003928734.1| flagellar motor protein MotB [Helicobacter pylori SJM180]
 gi|308060521|gb|ADO02417.1| flagellar motor protein MotB [Helicobacter pylori SJM180]
          Length = 257

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|292490116|ref|YP_003533011.1| putative outer membrane lipoprotein yiaD [Erwinia amylovora
           CFBP1430]
 gi|292901121|ref|YP_003540490.1| outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291200969|emb|CBJ48108.1| putative outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291555558|emb|CBA24133.1| putative outer membrane lipoprotein yiaD precursor [Erwinia
           amylovora CFBP1430]
          Length = 221

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR+G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 84  VQEAKLRDKMKGTGVSVTRSGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 142

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD+       + N  LS  RA      L+  GV+ +R+ + +G       
Sbjct: 143 PKTAVNVVGYTDS---SGSRQLNMNLSQQRADGVGSALIAQGVAANRV-RTNGMGPDNPV 198

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 199 ASNSSAEGKAQNRRVEITLSPLQ 221


>gi|296128006|ref|YP_003635256.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
 gi|296019821|gb|ADG73057.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
          Length = 560

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 77/280 (27%), Gaps = 11/280 (3%)

Query: 65  IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
           I   + P    LM  ++ +                       T+    L++         
Sbjct: 104 IASSWPPVNVRLMDLARDVVLHVGADSDGEPVVAPEDWSRFRTERGTRLQMPFAAPADDV 163

Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184
             L           Q       L   +    D+  +     +     +         +  
Sbjct: 164 DALSLFFPGAPLFAQVPIIDGELP-SAVHPDDVAAAEAAAATAAARASASPSATPDVEET 222

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A   +  L  + +     L    A+        E+T     + +    +  +F   S+  
Sbjct: 223 APPEELDLDAVVEAPVFPLESTTAELDGAVQTIESTE---KVEVT-LGSDVLFAFDSADL 278

Query: 245 LPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            PE+   +  + + LA      + + GHTD          N  LS  RA +    L    
Sbjct: 279 TPESADAVALVAQRLAEREAGSVEVVGHTDDQA---DDTYNLDLSRRRAQAVADALEAQV 335

Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
                  +++G       + +D     + NRR+ + +  +
Sbjct: 336 AGSGHRMRVAGRGESEPVVPNDSEENRALNRRVTVSLTSK 375


>gi|218673547|ref|ZP_03523216.1| outer membrane lipoprotein [Rhizobium etli GR56]
          Length = 180

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD       P     L  +  VL       I + G
Sbjct: 50  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 108

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           HTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+   
Sbjct: 109 HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 164

Query: 329 SANRRIDILV 338
           + NRR++I +
Sbjct: 165 AQNRRVEIQI 174


>gi|304391383|ref|ZP_07373325.1| inner membrane lipoprotein YiaD [Ahrensia sp. R2A130]
 gi|303295612|gb|EFL89970.1| inner membrane lipoprotein YiaD [Ahrensia sp. R2A130]
          Length = 219

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   VL  +  VL    +  +++ GHTD+       + N +LS  R  + 
Sbjct: 115 FNSGSADLKAQFFRVLNSVALVLKEYNKTLVNVSGHTDSD---GSDQFNQQLSERRGVNV 171

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            Q L++ G    R   + G+   R   ++        NRR++I
Sbjct: 172 AQYLVQQGTDSRRYY-VVGYGEERPIASNASAAGKEQNRRVEI 213


>gi|208434727|ref|YP_002266393.1| flagellar motor rotation protein [Helicobacter pylori G27]
 gi|208432656|gb|ACI27527.1| flagellar motor rotation protein [Helicobacter pylori G27]
          Length = 257

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|192359273|ref|YP_001981784.1| outer membrane protein A [Cellvibrio japonicus Ueda107]
 gi|190685438|gb|ACE83116.1| outer membrane protein A [Cellvibrio japonicus Ueda107]
          Length = 344

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
            T     I I +     +F+ + S     T  +   I  +L   +  +++ GHTD+   +
Sbjct: 221 VTEQ--RIVIDENLGGALFEFNKSEIR-NTAAIQPVIDVLLEDPSLYVNVIGHTDS---K 274

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
                N RLS  RA    + L   GVS  RI K+ G    +     +++   + NRR++ 
Sbjct: 275 GSEEYNQRLSQTRANVVAKYLNSKGVSLSRI-KVFGMGEDQPVADNSTEEGRAQNRRVEF 333

Query: 337 LVEDRQ 342
           ++ + Q
Sbjct: 334 IISNSQ 339


>gi|110633615|ref|YP_673823.1| OmpA/MotB [Mesorhizobium sp. BNC1]
 gi|110284599|gb|ABG62658.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 217

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   F   S+   P     L  +  VL    +  + + G
Sbjct: 87  LQGTGVSVTRQGDYI-ILNMPSNITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYG 145

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++      + N +LS  RA S    L+  G    R   + G    +   ++      
Sbjct: 146 HTDST---GSLQHNMQLSQRRAASVADYLIAQGTDSRRF-AVIGQGPSQPIASNATPEGR 201

Query: 329 SANRRIDI 336
           + NRR++I
Sbjct: 202 AQNRRVEI 209


>gi|109900555|ref|YP_663810.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109702836|gb|ABG42756.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 215

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 14/194 (7%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           +++KG  +             +N     +    + A+        + K+       L   
Sbjct: 29  NTQKGAGIGAIVGALIGKGTGDNDKSRYVWGAAVGALAGSAIGNYMDKQEEEFREELADS 88

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
                   E  R G  + +     +  F   ++        VL+ +  V+    +  + +
Sbjct: 89  G------VEVYREGDTLRLY-MPGSITFSSGNASVDSSFYPVLKDVALVINKYEKTTLMV 141

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GHTD +        N RLS  RA S    L+++GV   R+S + G   +      A+  
Sbjct: 142 EGHTDNT---GADDMNQRLSEARANSVKNYLVQNGVDNRRVSTL-GMGEYTPIADNATQA 197

Query: 327 MNSANRRIDILVED 340
               NRR+++ +  
Sbjct: 198 GRQKNRRVELKIIP 211


>gi|158523264|ref|YP_001531134.1| hypothetical protein Dole_3254 [Desulfococcus oleovorans Hxd3]
 gi|158512090|gb|ABW69057.1| conserved repeat domain [Desulfococcus oleovorans Hxd3]
          Length = 2118

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 230  DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR----DN 284
            +    P+F    +         ++ + + LA    + I + GHTD  P R  +R    DN
Sbjct: 909  EADQRPLFASFGTQLTENDKEQVRALRQSLAGRRIKRIIVTGHTDNQPIRARSRHIFADN 968

Query: 285  WRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              LSL RA S    L     +  +RI    G          A++   + NRR+ + V  
Sbjct: 969  DALSLGRAQSVATYLQTILNLPPERIEA-EGKGDREPVASNATEAGRAENRRVAVAVVS 1026


>gi|5081414|gb|AAD39369.1|AF117974_1 outer membrane protein OprF [Pseudomonas sp. DC]
          Length = 343

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 237 FDFDKSVVKPNSYRDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 293

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV  +R+S + G+   R     A+D   + NRR++
Sbjct: 294 KQVLVNQYGVGANRVSSV-GYGETRPVADNATDAGRAVNRRVE 335


>gi|296274015|ref|YP_003656646.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098189|gb|ADG94139.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 256

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           L+++ +  +       SK+         +    A    S ++  V + +           
Sbjct: 59  LDQTQDTIKRDESTNTSKDASNDADSNAQDTAAAADEMSQIAQEVNEQVSTQSEQVQITE 118

Query: 223 GILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRN 279
           G     +D  ++ MF++             + KI  V+        I I G+TD S F++
Sbjct: 119 GNNEFTLDIPSSIMFNEGEYNLSNKSAKNFISKIARVIRTMPQTFDIEIIGYTDRSNFKS 178

Query: 280 IA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               RD W LS  RA S  + L+K+ +   ++ K+S ++ +R K  +      NRR++I
Sbjct: 179 DTIPRDGWDLSALRAISVVKELIKNRIDPAQL-KVSAYSSYRPKSEN---AVENRRVEI 233


>gi|169633791|ref|YP_001707527.1| putative outer membrane lipoprotein [Acinetobacter baumannii SDF]
 gi|169796445|ref|YP_001714238.1| putative outer membrane lipoprotein [Acinetobacter baumannii AYE]
 gi|184157625|ref|YP_001845964.1| outer membrane protein [Acinetobacter baumannii ACICU]
 gi|215483907|ref|YP_002326132.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345916|ref|ZP_07226657.1| OmpA/MotB domain protein [Acinetobacter baumannii AB056]
 gi|301512888|ref|ZP_07238125.1| OmpA/MotB domain protein [Acinetobacter baumannii AB058]
 gi|332854748|ref|ZP_08435526.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332865708|ref|ZP_08436518.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332874587|ref|ZP_08442488.1| OmpA family protein [Acinetobacter baumannii 6014059]
 gi|169149372|emb|CAM87256.1| putative outer membrane lipoprotein [Acinetobacter baumannii AYE]
 gi|169152583|emb|CAP01565.1| putative outer membrane lipoprotein [Acinetobacter baumannii]
 gi|183209219|gb|ACC56617.1| Outer membrane protein [Acinetobacter baumannii ACICU]
 gi|213986628|gb|ACJ56927.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB307-0294]
 gi|322507933|gb|ADX03387.1| Putative outer membrane lipoprotein [Acinetobacter baumannii
           1656-2]
 gi|323517525|gb|ADX91906.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332727834|gb|EGJ59237.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332735135|gb|EGJ66217.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332737225|gb|EGJ68151.1| OmpA family protein [Acinetobacter baumannii 6014059]
          Length = 255

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S++       +L ++   L       + I GHTD+      A  N +LS DRA + 
Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
              L+   +  D +    G    +    +        NRRI+  V 
Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255


>gi|317048541|ref|YP_004116189.1| DotU family type IV / VI secretion system protein [Pantoea sp.
           At-9b]
 gi|316950158|gb|ADU69633.1| type IV / VI secretion system protein, DotU family [Pantoea sp.
           At-9b]
          Length = 404

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 13/168 (7%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y  P             + L DL ++++  ++          +       G  + I   +
Sbjct: 234 YQTPLPQITPGRRPTSPQALLDLHQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              +F    ++       +L  +   +      + +  +TD SP       ++  S  RA
Sbjct: 287 ---LFAADGTVVNQVGRALLAHVASAMKTVKGTVLVSVYTDNSPVDGRFVSSYEFSFARA 343

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            +  Q+L    ++E    K  G       + +D     + NRR++I +
Sbjct: 344 RAIAQLLNPQ-LAEGHSVKAEGRGDSNPLLPNDSNENRARNRRVEITL 390


>gi|163787730|ref|ZP_02182177.1| hypothetical protein FBALC1_04287 [Flavobacteriales bacterium
           ALC-1]
 gi|159877618|gb|EDP71675.1| hypothetical protein FBALC1_04287 [Flavobacteriales bacterium
           ALC-1]
          Length = 366

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           ++  S+   P +  V+ + +  +L      I I  HTD+   R     N  LS  RA S 
Sbjct: 258 YELGSARLTPASKKVIDERLLTILNDKPVNIEIMSHTDS---RGNDDFNQSLSQQRANSV 314

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              L+  G+S  R+S   G+   RL          S+  +  NRR +  V  
Sbjct: 315 VNYLVSKGISRSRLSA-KGYGETRLTNRCTNGADCSETQHQRNRRTEFRVLS 365


>gi|313204239|ref|YP_004042896.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312443555|gb|ADQ79911.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 410

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L    D   +   +       L          K +LQ   K I        ++     VL
Sbjct: 243 LKAIEDENAANKAKIQKLEADLQAANAERAADKAKLQADLKDIPQAKVSADSNQDALTVL 302

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDA 274
            +                  F+  SS     +  +L  +  VL    +   + I GHTD 
Sbjct: 303 LDVN----------------FEFGSSELSSRSRAILDDVALVLKVNKAWSKLLISGHTDN 346

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                  + N +LS +RA    + L+  G+S   +  ++GF   + K  ++       NR
Sbjct: 347 I---GGDKANKKLSEERAAGVKKYLISKGISAS-VIDVAGFGKEKPKTTNETKEGRYKNR 402

Query: 333 RIDILVE 339
           R ++++E
Sbjct: 403 RAELVIE 409


>gi|149919600|ref|ZP_01908079.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149819543|gb|EDM78971.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 458

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        ++I  L++  EVL    +  + I GHTD+   R   + N  LS  RA + 
Sbjct: 345 FETDKDTITKDSIPQLEQAAEVLNRFPDLRVEISGHTDS---RGGYQHNMDLSRRRAEAV 401

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            + L+ +GV   R+    G         +D       NRRI+  + 
Sbjct: 402 KKWLVDNGVDGSRLE-TRGAGPDEPIDTNDTSAGRFNNRRIEFTIL 446


>gi|294785320|ref|ZP_06750608.1| outer membrane porin F [Fusobacterium sp. 3_1_27]
 gi|294487034|gb|EFG34396.1| outer membrane porin F [Fusobacterium sp. 3_1_27]
          Length = 396

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      + GHTD+       + N  
Sbjct: 285 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 341

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           LS +RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 393


>gi|262193395|ref|YP_003264604.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262076742|gb|ACY12711.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 458

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 26/273 (9%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
           FG             +          +     +       D      ++ + Y R+++  
Sbjct: 189 FGFYYAFGPGEPAAPRTRRAEPVPYALASEPVDEDDDGVPDFSDACPSEPELYNRMDDED 248

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                    +    +     E+ +D     D +   + + +    P S ++         
Sbjct: 249 GCPERDPDGDGLFGAADECPEEAEDFEGFEDEDGCPDVDNDGDGNPDSADECPNRAETDN 308

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE-TIV 250
             +        +   VA+ I           GI            F   S+      +  
Sbjct: 309 GFEDEDGCPDEVPTRVAEYIG-------VLEGIR-----------FPSGSAKIRDRRSRR 350

Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L  +   LA      + I GHTD    R  A  N +LS +RA +    L+  G+   RI
Sbjct: 351 ILGDVAATLAEYPSVRVRISGHTDD---RGRAEKNVQLSRERADAVKWFLVDKGIEHTRI 407

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              +G+   R    +      + NRRI+  +  
Sbjct: 408 V-TAGYGPERPLADNGTRAGRAKNRRIEFELLT 439


>gi|153007835|ref|YP_001369050.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151559723|gb|ABS13221.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 200

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 30/187 (16%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGL------------VADNIVK---GVLFET 219
           LP ++  +  +      ++DL  +I   +S               A  IV+    +    
Sbjct: 18  LPSVATAQNTSADNSAYIRDLVPEIRDLVSASGSTDGKARGLSGAAQEIVEKSGNITMRE 77

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T   I++S+       +FD  S+    +    L  I ++L    +  + + G+TD+   +
Sbjct: 78  TEDSIVLSVTSD---VLFDFDSAKLTGKAKATLTDIAKILESMPDSAVRVVGYTDS---K 131

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331
                N +LS  RA +  + L+ +GV   R+ K  G         +      +P   + N
Sbjct: 132 GADSYNDKLSKSRADAVTKFLVNNGVQSARL-KPEGRGESEPVAPNEIKGKDNPDGRAQN 190

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 191 RRVEFVL 197


>gi|317491523|ref|ZP_07949959.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921070|gb|EFV42393.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 564

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD +S+      T V++  + ++ A    +I I GHTDA+     A+ N  LS  RA 
Sbjct: 445 SLFDTNSAKLKSGSTKVLVTALVDIKAQPGWLIVIAGHTDAT---GNAQRNLALSQARAE 501

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
           +    +   G        + G+   +   ++  D   +ANRR+DI +    G
Sbjct: 502 AVRDWMRSMGDIPVTCFAVQGYGASQPIASNETDAGRAANRRVDIRLVPEAG 553


>gi|157889006|dbj|BAF80954.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K         K++++   AK+I  +        ++  +  E T        I       F
Sbjct: 175 KAPKTPQTTTKQIEEKPQAKQIDKSCPEPRKGALLDHIGCEKT--------IALEGYFGF 226

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D+ S    PE    +Q++G+VL  + +  +I  GHTD++        N +LSL+RA +  
Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKVYNQKLSLERAKAVA 281

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           + L KSGV++++I+   G+   + K ++D     + NRR++
Sbjct: 282 KELEKSGVAKEKIAA-KGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|149277257|ref|ZP_01883399.1| lipoprotein PG3 [Pedobacter sp. BAL39]
 gi|149232134|gb|EDM37511.1| lipoprotein PG3 [Pedobacter sp. BAL39]
          Length = 226

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR+   A +I + +              E  R G  I I+   +  +F    +    +  
Sbjct: 76  KRMDKQAAEIQNAIPNA-----------EVIREGEGI-IVKFDSGILFGFDKADLTAQAK 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++ +   L       I + GHTD    +     N  LS  RA +     +  GV   R
Sbjct: 124 TNVKSLAGSLNQYPGTDIKVIGHTDN---KGTETYNMGLSERRAAAVKAYAVSQGVPSSR 180

Query: 309 ISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           +  +  GF+      +++   +ANRR+++++
Sbjct: 181 LITVGKGFSEPIDDNSTEAGRAANRRVEVVI 211


>gi|332308557|ref|YP_004436408.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175886|gb|AEE25140.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 215

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G ++ +     +  F   ++        VL+ +  V+    +  + + GHTD +
Sbjct: 90  VEVYREGDVLRLY-MPGSITFSSGNASVDSSFFPVLKDVALVINKYEKTTLMVEGHTDNT 148

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N RLS  RA S    L+++GV   R+S + G   +     +        NRR
Sbjct: 149 ---GADDMNQRLSEARANSVKNYLVQNGVDNRRVSTL-GMGEYTPIADNTTQAGRQKNRR 204

Query: 334 IDILVED 340
           +++ +  
Sbjct: 205 VELKIIP 211


>gi|302037886|ref|YP_003798208.1| putative OmpA/MotB family outer membrane protein [Candidatus
           Nitrospira defluvii]
 gi|300605950|emb|CBK42283.1| putative Outer membrane protein, ompA family [Candidatus Nitrospira
           defluvii]
          Length = 301

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S++   +   V+ K+   L  + E +I I GHTD+  + +    N +LS  RA + 
Sbjct: 198 FESNSAVLTSKGRAVVDKLVPALKRAPEAIIEIGGHTDS--YGDPEY-NLQLSRTRAEAV 254

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
            Q L++  V  +R++ + G+   R         +   NRRI+  V++ +
Sbjct: 255 RQYLVEHQV-PNRLTAV-GYGSTRPLSQDRTRAASKKNRRIEFRVKEER 301


>gi|256845382|ref|ZP_05550840.1| outer membrane porin F [Fusobacterium sp. 3_1_36A2]
 gi|256718941|gb|EEU32496.1| outer membrane porin F [Fusobacterium sp. 3_1_36A2]
          Length = 396

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      + GHTD+       + N  
Sbjct: 285 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 341

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           LS +RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 393


>gi|218514237|ref|ZP_03511077.1| outer membrane lipoprotein [Rhizobium etli 8C-3]
          Length = 141

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G     TR G  I I++  +   FD       P     L  +  VL       I + G
Sbjct: 11  LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 69

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           HTD++      + N  LS  RA S    L   G+ + R+S + GF   +     AS+   
Sbjct: 70  HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 125

Query: 329 SANRRIDILV 338
           + NRR++I +
Sbjct: 126 AQNRRVEIQI 135


>gi|326403344|ref|YP_004283425.1| hypothetical protein ACMV_11960 [Acidiphilium multivorum AIU301]
 gi|325050205|dbj|BAJ80543.1| hypothetical protein ACMV_11960 [Acidiphilium multivorum AIU301]
          Length = 215

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHS 262
            +    + T  G  + +    +  +         F   S+   P    +L ++G+ L  +
Sbjct: 73  AQKQALQRTAQGTGVQVSQTADNRLKLNVPADAGFATGSATLNPRLYPILDQLGQGLQQN 132

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             E + I G+TD++    I      LS +RA S    L+  G+S  RI    G       
Sbjct: 133 PTETVQIIGYTDSTGSNAINYP---LSDNRAASVKTYLVSRGISGQRI-ATRGMGPQDPV 188

Query: 322 --IASDPMNSANRRIDILV 338
              A+    +ANRR+DI V
Sbjct: 189 ASNATAAGRAANRRVDIYV 207


>gi|284034989|ref|YP_003384919.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283814282|gb|ADB36120.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 432

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 19/251 (7%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
             + K    L   S     + +    ++      + +     +L   S    D      +
Sbjct: 184 PKLPKKQTPLPQPSGESGGEMETPRTDVPKKETLKPAPAPVPTLVSVSGIVSDAKSKRPV 243

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
             +I+ + +     +   +  A     R+     ++ + ++         GVL  +   G
Sbjct: 244 TATIDYQLSSSKQAIDSVQSFASTGAYRMSLNKGQVYTYIASARGYQSASGVLDLSKVAG 303

Query: 224 ILISIIDQRNTPM------------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
                 D   TP+            F+ S S  L  +   L K+  ++  +  + I + G
Sbjct: 304 GQKLTRDIALTPLAVGDKVTLKNIYFEMSKSNLLSASFAELNKLVSMMQDNPNMSIRLEG 363

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMN 328
           HTD          N +LS DR  +  + L++ G+  DRI  I G+   R  +   +D   
Sbjct: 364 HTD---IIGDHDKNLQLSRDRVIACQRYLVQQGIDIDRIQTI-GYGDTRPILTKGTDEER 419

Query: 329 SANRRIDILVE 339
             NRR++ ++ 
Sbjct: 420 KVNRRVEFVIL 430


>gi|323189288|gb|EFZ74571.1| inner membrane lipoprotein yiaD [Escherichia coli RN587/1]
          Length = 219

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+         L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKLAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTSEGKAQNRRVEITL 216


>gi|225873103|ref|YP_002754562.1| ompA family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791640|gb|ACO31730.1| ompA family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 508

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +   +   +   +    +  G+++++ D     +F   S        + L +I  +L   
Sbjct: 345 MRNRLEQQLNAVLATRESARGLIVNMSD----VVFATGSYQIKTSAQIKLARIAGILMTY 400

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               + + G+TD       A  N +LS  RA +  + L+  GV  + IS   G+      
Sbjct: 401 PGLKVQVEGYTDNV---GSAAFNQKLSNQRANAVMKFLISQGVKANSISA-KGYGEADPV 456

Query: 322 IASDP--MNSANRRIDILV 338
            +++     + NRR+ ++V
Sbjct: 457 ASNNTVAGRAKNRRVQLVV 475


>gi|167644153|ref|YP_001681816.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167346583|gb|ABZ69318.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 224

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 9/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G      R G  I ++   +   F    S   P+   VL  +   L    +  I I G
Sbjct: 94  LEGSGVMIRRNGDQIVLV-MPSDVTFAVDKSEVQPQFTRVLDDVARTLNAYPQTTIDIVG 152

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--M 327
           H D+         N  LS  RA S    L   G V  DR+  ++G    +   ++D    
Sbjct: 153 HADS---SGPDDYNQTLSERRASSVASYLTNVGRVVPDRVF-VAGQGERQPIASNDTPEG 208

Query: 328 NSANRRIDILVED 340
            + NRR++I++  
Sbjct: 209 RAQNRRVEIILRP 221


>gi|153833224|ref|ZP_01985891.1| outer membrane protein OmpA [Vibrio harveyi HY01]
 gi|148870495|gb|EDL69410.1| outer membrane protein OmpA [Vibrio harveyi HY01]
          Length = 326

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  +  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 207 EEYGSGTFEFDSAKLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 263

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA +    L+ +G+  DR + ++G         +        NRR++++V
Sbjct: 264 ERRAQAVADYLIAAGIDADRFT-VTGMGEENPVADNSTHEGREQNRRVEVVV 314


>gi|261380477|ref|ZP_05985050.1| OmpA family protein [Neisseria subflava NJ9703]
 gi|284796724|gb|EFC52071.1| OmpA family protein [Neisseria subflava NJ9703]
          Length = 226

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
               E  R G  I ++   N   F   S+         L    + L    +  ++I GHT
Sbjct: 90  NTNIEVERQGNQIKLVMPENVT-FATGSAALSGHAQSALSAAAQTLVQYPDTTLTINGHT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D +        N  LS +RA S    L   GVS  R+    G+   +   ++      + 
Sbjct: 149 DNT---GNDAINEPLSRNRAESVATFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204

Query: 331 NRRIDILVEDRQ 342
           NRR++IL+   Q
Sbjct: 205 NRRVEILINPDQ 216


>gi|146328667|ref|YP_001209012.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
 gi|146232137|gb|ABQ13115.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
          Length = 225

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 223 GILISIIDQ-------RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDA 274
           GI +  IDQ           +F        P     L  + + +    + I  I GHTD+
Sbjct: 88  GINVQRIDQGTLQLNIPGDVLFATDEYQIRPNFYQTLNSVAQTMNQYPQTIVHIYGHTDS 147

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332
           +     A  N  LS  RA SA Q LM+ GV+  RI    G+  +  +  +      + NR
Sbjct: 148 T---GRAAYNQGLSERRANSAAQYLMQQGVNMQRILS-KGYGQNYPRANNATPDGRAQNR 203

Query: 333 RIDILVE 339
           R+++ ++
Sbjct: 204 RVEVYIK 210


>gi|157889051|dbj|BAF80990.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             K++++    K+I  T S      ++  +  E T     I++        F    +   
Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++        N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++++I    G+   + K ++D     + NRR++
Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|157889046|dbj|BAF80986.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             K++++    K+I  T S      ++  +  E T     I++        F    +   
Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++        N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++++I    G+   + K ++D     + NRR++
Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|157889041|dbj|BAF80982.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             K++++    K+I  T S      ++  +  E T     I++        F    +   
Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++        N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++++I    G+   + K ++D     + NRR++
Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|157889031|dbj|BAF80974.1| fibronectin-binding protein [Campylobacter lari]
 gi|157889036|dbj|BAF80978.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             K++++    K+I  T S      ++  +  E T     I++        F    +   
Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++        N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++++I    G+   + K ++D     + NRR++
Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|86141296|ref|ZP_01059842.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
 gi|85831855|gb|EAQ50310.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
          Length = 640

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 90/267 (33%), Gaps = 19/267 (7%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D+    E    NK   S D    K   D+   + N  K  Q +   ++ L   +  +  K
Sbjct: 383 DDFAYLEGDEPNKGFFSSDRPGGKGGDDIYAFNYNLAKCVQYISGTVYDLETKEPIKGAK 442

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
             +T   E GK+  +    +      E       + E   A   + +L      +     
Sbjct: 443 --VTVFDEDGKEYARIETGDDGSYSVELLCESTYTIEARKAGYSEDQLDFETDVLPDRKM 500

Query: 205 GLVADNIVKGVLFETTRTGI-LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
            +V   +        T   I  I I    +   F+           + L+++ EV+    
Sbjct: 501 NMVDFRLKDLSEIFVTDGDIEKIRI----DPIYFEYYRYNITDVAAIQLRRVIEVMDAYP 556

Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           E+I  I  HTD    R     N  LS +RA S    L+++G+   RI    G+   +   
Sbjct: 557 EMIIKIESHTDQ---RGTDYFNKTLSTNRANSTKDWLIENGIDPSRIQSAIGYGESQPIN 613

Query: 323 ASDPMN--------SANRRIDILVEDR 341
             D           S NRR + +V  R
Sbjct: 614 ICDEEGKTCTELEYSENRRSEFIVVSR 640


>gi|298369467|ref|ZP_06980784.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282024|gb|EFI23512.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 224

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +   AKK+  +L+             +  + G  I ++   N   F  +S+         
Sbjct: 77  MDYQAKKLRESLANTD---------VKVEQQGNQIKLVMPENVT-FATNSATLSANARDA 126

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L    + L    +  ++I GHTD +        N  LS +RA S    L   GV+  R++
Sbjct: 127 LTAASKTLVQYPDTTLTINGHTDNT---GSDAINDPLSRNRAQSVASFLQSQGVAGSRLT 183

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +G    +   ++      + NRR++IL+   Q
Sbjct: 184 -TAGHGSRQPVASNATPEGRAQNRRVEILINPDQ 216


>gi|88705660|ref|ZP_01103370.1| outer membrane protein; OprF [Congregibacter litoralis KT71]
 gi|88700173|gb|EAQ97282.1| outer membrane protein; OprF [Congregibacter litoralis KT71]
          Length = 247

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 16/132 (12%)

Query: 219 TTRTGILI---------SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268
            T  G+ +          ++   +   FD  S+    ++   L     V+  HS+  + +
Sbjct: 119 NTPEGVKVDATGCPIKDEVVLTVDRLSFDFDSAALDAQSRAALDAAVAVIKSHSSVKMDV 178

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD          N  LS  RA +A   L+  GV  D++ + +G        ++D   
Sbjct: 179 VGYTDT---SGPEEYNLGLSKRRAQAAVDYLVSQGVDADQL-RATGRGEADPVASNDTRD 234

Query: 327 MNSANRRIDILV 338
               NRR++++V
Sbjct: 235 GRERNRRVELVV 246


>gi|312892040|ref|ZP_07751540.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295412|gb|EFQ72581.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 460

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            + V    T     + + D      FD   +     ++  L K+ E+L +    + + GH
Sbjct: 336 AENVKVYITEEDKRV-VKDAIANLEFDLGKATIRAHSLPSLDKVAELLVNKNFSLKLAGH 394

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           TD       A  N RLS +RA +    L+  G +  RI   +G+  ++   ++       
Sbjct: 395 TDN---SGSAALNMRLSKERAEAIKTYLVSKGANASRIEA-TGYGMNQPIASNKTAAGRQ 450

Query: 331 -NRRIDILV 338
            NRR++  +
Sbjct: 451 QNRRVEFTL 459


>gi|237753154|ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375421|gb|EEO25512.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 466

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +   +KIS   +  +    +K    +     ++I     ++   F  +SS   P      
Sbjct: 82  RAEQRKISEAKNVKIEFENIKKDGTKQKNDKVII-----KDNNQFKSASSTLNPNAKDYY 136

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +I +      + I I GHTD +     +  N +LS  RA +  +V  ++GVS   I   
Sbjct: 137 TQIAKTYQVKDKKILIVGHTDDT---GNSAFNQKLSEKRARAVGKVFAQNGVSTKNIY-Y 192

Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
            G    + K  ++     + NRR++I+  D + 
Sbjct: 193 QGAGSTQPKADNNTEKGRAENRRVEIIELDNEA 225


>gi|291617209|ref|YP_003519951.1| YiaD [Pantoea ananatis LMG 20103]
 gi|291152239|gb|ADD76823.1| YiaD [Pantoea ananatis LMG 20103]
          Length = 405

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y +P             + L DL ++++  ++          +       G  + I   +
Sbjct: 234 YNMPLPQITVNRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291
              +F +  ++  P    +L ++   +      I +   TD  P   +    ++  S  R
Sbjct: 287 ---LFAEQGTVINPVGRAILARVSSAMKDVKGTILVSVFTDDKPVDGSRFASSYEFSFAR 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A S  Q+L    +++  + +  G       + +D     + NRR++I +
Sbjct: 344 ARSVSQLLQVQ-LADTHVIRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391


>gi|126641351|ref|YP_001084335.1| putative outer membrane lipoprotein [Acinetobacter baumannii ATCC
           17978]
          Length = 209

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S++       +L ++   L       + I GHTD+      A  N +LS DRA + 
Sbjct: 108 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDANKNLKLSQDRALAV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
              L+   +  D +    G    +    +        NRRI+  V 
Sbjct: 165 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 209


>gi|260062849|ref|YP_003195929.1| OmpA family protein [Robiginitalea biformata HTCC2501]
 gi|88784417|gb|EAR15587.1| OmpA family protein [Robiginitalea biformata HTCC2501]
          Length = 231

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R+   A+KI   L G            +    GI ++    +    F  + S     ++ 
Sbjct: 78  RMDRQAEKIEEELPGA---------EVKRVGEGINVTFTQDQGVH-FATNQSAIEGASVT 127

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L K+  +     + VI + GHTD+         N  LS  RA S    L+  G+ +DR 
Sbjct: 128 TLNKLAGIFKEYPKSVILVEGHTDS---AGPEDYNMSLSQRRAESVVNYLVAQGIDKDRF 184

Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           + +  +   + +  +      + NRR+++ +   + 
Sbjct: 185 T-VRWYGETQPRADNSTAEGKAQNRRVEMGIIASEA 219


>gi|254463375|ref|ZP_05076791.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206679964|gb|EDZ44451.1| OmpA family domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 222

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L        V    T   +++S+        F   S+         L  +   
Sbjct: 83  LDKQAAELQKSLGNDRVTITNTGDRLIVSLPQDIT---FASDSATLSSGIQSDLNAVATN 139

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       + + GHTD++     A  N  LS+ RA S   VL  +GVS  R+  I G   
Sbjct: 140 LQSYPNSTVQVIGHTDST---GEAGYNQNLSVQRANSVVNVLAGAGVSFTRLQGI-GRGE 195

Query: 318 HRLKIAS--DPMNSANRRIDILVED 340
            +   ++  +   + NRR++I++  
Sbjct: 196 DQPVASNLTEEGKAQNRRVEIVILP 220


>gi|254465245|ref|ZP_05078656.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206686153|gb|EDZ46635.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 219

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                  +  S   K ++            + D ++ +       +   +   I      
Sbjct: 22  TDPATVGTPGSNTQKGAVLGGIIGAGVGAIANDSDRGLGAATGALVGAAAGSVI-----G 76

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L    +++  TL+          +    T   +++S     N   F   S+   P   
Sbjct: 77  NQLDAQERELRQTLAN-------DSITIVNTGDRLILSF---PNDLTFATDSAAVAPAVQ 126

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+++ + L       I + GHTD+      A  N  LS  RA +    +   GV   R
Sbjct: 127 ADLRRVADSLVRYPNSAIQVIGHTDSD---GDAGYNQGLSERRANAVASHIQAGGVPYHR 183

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
           + +I G    +   ++      + NRR++++V  +  
Sbjct: 184 M-RIIGRGESQPVASNLTPEGKARNRRVEVVVIPQAA 219


>gi|189179675|dbj|BAG39456.1| outer membrane protein [Gluconacetobacter intermedius]
          Length = 405

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD   +     +  ++ +  +   H  T  I + G+TD   A P     + N  LS+ R
Sbjct: 297 FFDWDGAALTGRSREIVAQAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEQYNMGLSMRR 356

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A S    L++ GV    I  I G+      + +  D     NRR++I++
Sbjct: 357 ADSVKAELIRDGVPASGID-IHGYGEAHPMVPTGPDTREPQNRRVEIIL 404


>gi|94496613|ref|ZP_01303189.1| OmpA/MotB [Sphingomonas sp. SKA58]
 gi|94423973|gb|EAT08998.1| OmpA/MotB [Sphingomonas sp. SKA58]
          Length = 226

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 15/162 (9%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239
           + +K L      ++    G   D   + +  ET  TG+ + I D  N  +       F  
Sbjct: 60  RTEKILGAGIGAVAGAGIGAYMDAQERKLREETAGTGVDV-IRDGDNLLLRMPSGITFGY 118

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             +   P+    L  +  VLA   +  I + GHTD+         N  LS  RA +    
Sbjct: 119 DRADVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDSD---GSDAYNQTLSERRAQAVANY 175

Query: 299 LMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           L+  GV   RI    GF   +     A++   +ANRR++I +
Sbjct: 176 LVGRGVQSARIG-TRGFGETQPIASNATEEGKAANRRVEIKI 216


>gi|134094293|ref|YP_001099368.1| putative outer membrane protein; putative peptidoglycan-associated
           (lipo)-protein [Herminiimonas arsenicoxydans]
 gi|133738196|emb|CAL61241.1| conserved hypothetical protein; putative OmpA domain [Herminiimonas
           arsenicoxydans]
          Length = 225

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266
            +   +G   + T+T      +D  +   F    S        +L +    L  +    +
Sbjct: 81  MEQATQGTGVQVTQTSDNRLKLDIPSDISFATGRSDINSSFRPILDRFATGLVDNPAATV 140

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324
           +I GHTD++    I      LS DRA      L   GV+  RI  + G          A+
Sbjct: 141 TIIGHTDSTGSDAINNP---LSFDRASRTRDYLAGRGVAPQRIH-VDGRGSREPVASNAN 196

Query: 325 DPMNSANRRIDILV 338
           +   + NRR++I V
Sbjct: 197 EAGRARNRRVEIYV 210


>gi|261416280|ref|YP_003249963.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372736|gb|ACX75481.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 485

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    ++ + L K+ +++    E    I GHTD          N  LS DRA + 
Sbjct: 381 FESGKSTITQDSYISLMKVVDIMETFPEATFEIVGHTDNI---GNKDKNMTLSADRANAV 437

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L++ G++E R++   G    +   ++      + NRRI+ +
Sbjct: 438 KNFLVEKGIAESRMT-TQGMGDTKPVASNKTPEGRAQNRRIEFI 480


>gi|156072340|gb|ABU45492.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302328072|gb|ADL27273.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 511

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    ++ + L K+ +++    E    I GHTD          N  LS DRA + 
Sbjct: 407 FESGKSTITQDSYISLMKVVDIMETFPEATFEIVGHTDNI---GNKDKNMTLSADRANAV 463

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L++ G++E R++   G    +   ++      + NRRI+ +
Sbjct: 464 KNFLVEKGIAESRMT-TQGMGDTKPVASNKTPEGRAQNRRIEFI 506


>gi|327393665|dbj|BAK11087.1| flagellar motor protein YiaD [Pantoea ananatis AJ13355]
          Length = 405

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y +P             + L DL ++++  ++          +       G  + I   +
Sbjct: 234 YNMPLPQITVNRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291
              +F +  ++  P    +L ++   +      I +   TD  P   +    ++  S  R
Sbjct: 287 ---LFAEQGTVINPVGRAILARVSSAMKDVKGTILVSVFTDDKPVDGSRFASSYEFSFAR 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A S  Q+L    +++  + +  G       + +D     + NRR++I +
Sbjct: 344 ARSVSQLLQVQ-LADTHVIRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391


>gi|295681051|ref|YP_003609625.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295440946|gb|ADG20114.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 559

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K++   L  + A +    +   +    + I      N  +FD   +   P     L+ + 
Sbjct: 416 KQLQVALERVTATSHSPSIAAHSPPLAVTI-----DNFLLFDTGKTTLKPGAEPRLKGVL 470

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           +++  + +  I I GHTD       +  N +LS  RA +     + +         I G+
Sbjct: 471 DLIRANPDKRILIAGHTDNV---GPSVANQKLSEARAQAIRDWFVNTASLSVTRFAIQGY 527

Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340
              R   +++       NRR++I +  
Sbjct: 528 GDTRPIASNESRQGREMNRRVEISLIP 554


>gi|77919971|ref|YP_357786.1| outer membrane protein/peptidoglycan-associated (lipo)proteins
           [Pelobacter carbinolicus DSM 2380]
 gi|77546054|gb|ABA89616.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Pelobacter carbinolicus DSM 2380]
          Length = 427

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 22/272 (8%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D +N    S+         +  T   V                 +        +      
Sbjct: 164 DPENNFIYSAGLTYLFGSQQPATPRVVPKDTDQDGIIDANDACPDTPAGAPVDKLGCPL- 222

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +S        +D C  T    +++++             +  +      D        + 
Sbjct: 223 DSDKDGVPDYRDKCPGTPDSVAVDQQGCALDKDGDGVADIHDRCPDTPADTPVDTEGCMG 282

Query: 205 GLVADNIVKGV-LFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256
               D +   +     T  G+++   DQ+  P+       FD   +   P     L++  
Sbjct: 283 DADKDGVADQMDKCPGTPAGLMV---DQQGCPISLTLAIEFDVDKADIKPRYHSELKRGA 339

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314
           + +    E  I I GHTD++   + A  N  LS  RA S    ++ + G+  +R+    G
Sbjct: 340 DFIRKYPESRILIAGHTDST--ASDAY-NLALSQRRADSVRNYVISNFGIKAERLEA-KG 395

Query: 315 FAHHRLKIASDP--MNSANRRIDILV--EDRQ 342
           +        +        NRR+++ V   +++
Sbjct: 396 YGEAFPIADNATVQGRQRNRRVELSVYALNKK 427


>gi|86139806|ref|ZP_01058372.1| OmpA domain protein [Roseobacter sp. MED193]
 gi|85823435|gb|EAQ43644.1| OmpA domain protein [Roseobacter sp. MED193]
          Length = 218

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 21/206 (10%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q  E  +N L   +  G  L   ++                    ++  +  K+  +L +
Sbjct: 29  QPGEKERNGLIAGAIVGAGLAGLSNSSNKGAAVVAGAAAGALLGGVIGSQLDKQEAELRE 88

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            +S+            G+    T   +++S+    N   F   S+   P     L+++ +
Sbjct: 89  SLSN-----------NGITIVNTGDRLIVSL---PNDLTFASDSAAISPAVESDLRQVAQ 134

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            +       + + GHTD+      A  N  LS  RA +    +   GV  +R+ +  G  
Sbjct: 135 SIVRYPNSSVQVIGHTDSD---GDASYNQTLSEQRANTVADQVQAGGVPYNRL-QTFGRG 190

Query: 317 HHRLKIAS--DPMNSANRRIDILVED 340
             +   ++      + NRR++I++  
Sbjct: 191 ESQPVASNLTAEGKAQNRRVEIVIVP 216


>gi|104780439|ref|YP_606937.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109426|emb|CAK14127.1| putative outer memebrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 239

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I++ D +   +F  +S          L  +   L   +   I + GHTD+         
Sbjct: 127 VITL-DDQGQVLFAFNSDRLEAGAQERLHNLLPKLNDPSVLSIKVIGHTDSV---GSDSY 182

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           N  LS  RA S  + L+  G++ ++++   G         +D     + NRR+++ +
Sbjct: 183 NQGLSERRASSVAEYLISQGLAPEKVTS-QGRGESEPVADNDTEEGRAHNRRVELHL 238


>gi|92113921|ref|YP_573849.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91797011|gb|ABE59150.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 294

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    E   +L  +   L+ + +  + + G+TD+      A  N  LS  RA S 
Sbjct: 192 FEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSV---GSASYNKDLSQRRADSV 248

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            + L+  GV+ D I+   G+        ++     + NRR+++
Sbjct: 249 KEYLVSKGVNADSIT-TYGYGEQNPIATNETAEGRAENRRVEL 290


>gi|114319490|ref|YP_741173.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225884|gb|ABI55683.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 224

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G     TR G  + I++      F   S+    +   VL  +  V     + +I + G
Sbjct: 95  LRGTGVSVTRDGENV-ILNMPGHVTFAFDSADLRSDFFEVLDSVAIVANEFDQTMIEVAG 153

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           HTD++     A  N RLS  RA +  + L+   V+E R+  + GF   R   ++  +   
Sbjct: 154 HTDST---GPAEYNQRLSERRAQTVARYLVGRDVAEMRMIAV-GFGEERPIASNQTEEGR 209

Query: 329 SANRRIDILVED 340
             NRR++I    
Sbjct: 210 QQNRRVEITFLP 221


>gi|307823763|ref|ZP_07653991.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307735057|gb|EFO05906.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 322

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 91/273 (33%), Gaps = 20/273 (7%)

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           T S  + D   PP    Q ++  +  + +T+++ +  +     +                
Sbjct: 62  TQSPAVDDGLQPPITQLQGEVTQNQAKGLTESAQNKGLELEPTQSPVDEGSQPPITQPQG 121

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           + +      LT  ++      + T        +     P    +  +   + K L + A+
Sbjct: 122 EVTPDLAKGLTESTQNKGLELEPTQSPIDEGSQSAITQP----QGEVTPDQAKGLTESAQ 177

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
               +     A    +    E     +L+          F      P       +  I  
Sbjct: 178 PAGDSGFPTPAAEGKRSSQHEPVS--LLVL-----GGGFFSSGQITPRANIQDAIDNIIP 230

Query: 258 VLAHST-EVISIRGHTDA-SPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           ++     + + + GH D   PF      +++ N  +SL RA +  QVL K G++ DRI  
Sbjct: 231 LIQTRPLDNVVVEGHADKWVPFGASPAQVSKLNENISLRRANAIAQVLKKKGIASDRII- 289

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           + G        ++   +    NRR++I +   Q
Sbjct: 290 VHGLGDTVPLASNLTYDGRMKNRRVEIKLLPAQ 322


>gi|153009315|ref|YP_001370530.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561203|gb|ABS14701.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 221

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G     TR G  I I++  ++  FD        +    L  +  VL   +  ++ + G
Sbjct: 90  LQGTGVSVTRNGDQI-ILNMPSSITFDTDQDQVKSQFYPTLNSVAIVLRKFNQTLVDVYG 148

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           HTD++        N  LS  RA S    L   G+   R   + G+   +    +      
Sbjct: 149 HTDST---GSVSHNQALSQRRAASVASYLGSQGIDPRRF-AVIGYGASQPVATNATPEGR 204

Query: 329 SANRRIDILVEDRQG 343
           + NRR++I +   + 
Sbjct: 205 AQNRRVEIQISPLRA 219


>gi|4580971|gb|AAD24558.1|AF117966_1 OprF [Pseudomonas mendocina]
          Length = 318

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E+   ++ + + +    +  + + GHTD+         N  LS  RA + 
Sbjct: 219 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 275

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV   R++ + G+   R     A+D   + NRR++
Sbjct: 276 RNVLVNQYGVDGSRVNAV-GYGETRPVADNATDSGRAINRRVE 317


>gi|332828413|gb|EGK01122.1| hypothetical protein HMPREF9455_02644 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 224

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             + G   E+   G  I +    +  +F  +SS     +   L      L ++ +  + I
Sbjct: 84  EQINGAQVESINDGQAIKVT-FESGILFATNSSTLNSASQSALTSFATSLNNNPDTDVQI 142

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +    I      LS  RA S Y  L   GVS  R+    GF   +    +    
Sbjct: 143 YGHTDNTGSDAINNP---LSEKRAQSVYNFLQTKGVSGSRMVS-QGFGSTQPVADNSTVA 198

Query: 327 MNSANRRIDILVEDRQ 342
             S NRR++I +   +
Sbjct: 199 GRSQNRRVEIYILPNE 214


>gi|254511628|ref|ZP_05123695.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535339|gb|EEE38327.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 634

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDN 284
           I+ + Q +   F+  S+  + ++   L +I ++L       + I+GHTD+         N
Sbjct: 488 IAEVQQGSKIAFEPGSATVVADSRAALDQIADILRECGPIRLEIQGHTDSQ---GREEMN 544

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            +LS  RA S    L    V     S + G+        +D  +    NRRI+ L+   +
Sbjct: 545 QQLSQARAQSILNELRGRRVPTSSFSAV-GYGETLPIADNDTEDGREANRRIEFLLIRPE 603


>gi|56477938|ref|YP_159527.1| outer membrane lipoprotein [Aromatoleum aromaticum EbN1]
 gi|56313981|emb|CAI08626.1| outer membrane lipoprotein containing OmpA/MotB domain [Aromatoleum
           aromaticum EbN1]
          Length = 189

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F +  + P P     L ++   LA S    I + GHTD+    +    N +LS+ RA + 
Sbjct: 85  FSRGGTEPQPVLTPNLDRVASALASSPEVEIRVFGHTDSL---DSELHNLQLSIQRAETV 141

Query: 296 YQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVED 340
            + L + G+   R+     G A      A++   + NRR++I++  
Sbjct: 142 AEHLRRRGIPLVRLHADGKGEAEPIADNATEAGRAKNRRVEIVLRP 187


>gi|322509420|gb|ADX04874.1| Outer membrane protein [Acinetobacter baumannii 1656-2]
 gi|323519441|gb|ADX93822.1| putative lipoprotein precursor [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 154

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
               +FD + +         L ++   L       + I GHTD     N    N +LS +
Sbjct: 47  PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 103

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           RA S   + +  G  ++ I  + G    +  + +  +   + NRR+ I++  
Sbjct: 104 RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 154


>gi|169794682|ref|YP_001712475.1| putative lipoprotein precursor [Acinetobacter baumannii AYE]
 gi|213157946|ref|YP_002320744.1| OmpA/MotB [Acinetobacter baumannii AB0057]
 gi|215482270|ref|YP_002324452.1| Outer membrane protein A precursor [Acinetobacter baumannii
           AB307-0294]
 gi|239504137|ref|ZP_04663447.1| Outer membrane protein A precursor [Acinetobacter baumannii AB900]
 gi|260554079|ref|ZP_05826342.1| outer membrane protein A [Acinetobacter sp. RUH2624]
 gi|260558111|ref|ZP_05830321.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC
           19606]
 gi|301345841|ref|ZP_07226582.1| Outer membrane protein A precursor [Acinetobacter baumannii AB056]
 gi|301512157|ref|ZP_07237394.1| Outer membrane protein A precursor [Acinetobacter baumannii AB058]
 gi|301597153|ref|ZP_07242161.1| Outer membrane protein A precursor [Acinetobacter baumannii AB059]
 gi|332851565|ref|ZP_08433542.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332867764|ref|ZP_08437836.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332873499|ref|ZP_08441450.1| OmpA family protein [Acinetobacter baumannii 6014059]
 gi|169147609|emb|CAM85470.1| putative lipoprotein precursor [Acinetobacter baumannii AYE]
 gi|193078408|gb|ABO13390.2| putative lipoprotein precursor [Acinetobacter baumannii ATCC 17978]
 gi|213057106|gb|ACJ42008.1| OmpA/MotB [Acinetobacter baumannii AB0057]
 gi|213987976|gb|ACJ58275.1| Outer membrane protein A precursor [Acinetobacter baumannii
           AB307-0294]
 gi|260404818|gb|EEW98325.1| outer membrane protein A [Acinetobacter sp. RUH2624]
 gi|260408384|gb|EEX01692.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC
           19606]
 gi|332729910|gb|EGJ61242.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332733770|gb|EGJ64922.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332738324|gb|EGJ69200.1| OmpA family protein [Acinetobacter baumannii 6014059]
          Length = 159

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
               +FD + +         L ++   L       + I GHTD     N    N +LS +
Sbjct: 52  PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 108

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           RA S   + +  G  ++ I  + G    +  + +  +   + NRR+ I++  
Sbjct: 109 RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 159


>gi|163753146|ref|ZP_02160270.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
 gi|161326878|gb|EDP98203.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
          Length = 543

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 20/295 (6%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           + +   D    K I+  FN      M +S    ++         N    + +    K   
Sbjct: 263 YNLGGLDVFESKIIDGKFNFPVN--MGSSLNSTEDDFGFLMDQSNSGFFTSNRPGGKGGN 320

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
           D  I    ++K  Q L+  I     +    +   ++     +  D   S D         
Sbjct: 321 D--IYYFKREKTTQILQGTIVDYKTNMILPNATVTVVDAYGRVVDKITSDDKGVFTTTVI 378

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
            Y    L   K   ++ ++  +            +        ++ E     ++I I   
Sbjct: 379 PYNSYTLHASKDGFIETEEEFESFRGDDFKHTVTIKLPQAKAEIVKE--DEKLMIKI--- 433

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
                FD +  +   E+ + L KI +VL  + E  I I  HTD    R  A  N +LS  
Sbjct: 434 -ENIYFDYNKWMLKDESTLSLNKIIDVLNENPEMKIEINAHTDN---RGRATYNSKLSNK 489

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340
           RA SA   L+K+G+   R+   +G+   +         S+  +  NRRI+ L+ +
Sbjct: 490 RAASARAYLLKNGIDASRVIS-NGYGESQPIEDCGTKCSEAQHETNRRIEFLIVE 543


>gi|255533611|ref|YP_003093983.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255346595|gb|ACU05921.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 440

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V+ ++       ++    D      FD   +    ++   L ++ E+L      + + GH
Sbjct: 318 VEKIIITEADRKVV---ADAIKNLEFDLGKATIRQKSYATLNRVAELLIQKNFSLKLAGH 374

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           TD +     A  N RLS DRA S    L+  G +  RI   +G+  ++   ++       
Sbjct: 375 TDNT---GSAALNMRLSKDRAESVKAYLVSQGANASRIEA-TGYGMNQPIASNKTAAGRQ 430

Query: 331 -NRRIDILV 338
            NRR++  +
Sbjct: 431 QNRRVEFTL 439


>gi|33600833|ref|NP_888393.1| putative lipoprotein [Bordetella bronchiseptica RB50]
 gi|33568433|emb|CAE32345.1| putative lipoprotein [Bordetella bronchiseptica RB50]
          Length = 200

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271
           +GV     +  + I+++      +FD   +  L      LQ I +++   +T +++I GH
Sbjct: 70  EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLQDIAKLIKSPATGIVAIEGH 126

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------- 324
           TD+   +     N  LSL RA +  Q L   GV   ++  + G    R    +       
Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPNQLANGAD 182

Query: 325 DP-MNSANRRIDILVEDR 341
           +P   + NRR++ ++ +R
Sbjct: 183 NPQGRAQNRRVEFVLPNR 200


>gi|262364585|gb|ACY61142.1| OmpA domain protein [Yersinia pestis D182038]
          Length = 987

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 813 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 869

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 870 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 929

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 930 AIGRGESDPLADNATEEGRKRNRRVDIL 957


>gi|119944065|ref|YP_941745.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37]
 gi|119862669|gb|ABM02146.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37]
          Length = 215

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +          L  + +VL    +  + I GHTD+      +  N  LS  RA S 
Sbjct: 112 FDTGNYQLSGSIFSTLNGVAKVLNEYPKSSLRIIGHTDSV---GSSESNLTLSERRAESV 168

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              LM+  V   R+S + G+   R    +D     +ANRR++I
Sbjct: 169 SNYLMQRNVKSGRLSTL-GYGERRPIATNDTPYGRAANRRVEI 210


>gi|26987857|ref|NP_743282.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|148546400|ref|YP_001266502.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|24982560|gb|AAN66746.1|AE016303_1 OmpA family protein [Pseudomonas putida KT2440]
 gi|148510458|gb|ABQ77318.1| OmpA/MotB domain protein [Pseudomonas putida F1]
 gi|313497483|gb|ADR58849.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 230

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+         L  I   L     +  +S+ GHTD+         N +LS  RA+S
Sbjct: 126 FEFDSARLTASDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
               L++SGV       + G    +     A+    + NRR +I ++ 
Sbjct: 183 VTDYLVESGVPRSSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 230


>gi|37528060|ref|NP_931405.1| hypothetical protein plu4224 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787497|emb|CAE16596.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 558

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S   PE   VL   + E+ A    ++ I GHTD++     A  N  LSL RA 
Sbjct: 441 SLFDVGQSRLKPEAAKVLVNALIEIKAKPEWMVVITGHTDST---GDAVKNRELSLARAK 497

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +    +L  S VS      + G    +    +      + NRR++I +  
Sbjct: 498 AVRDWILQTSDVSPT-CFVVKGEGATQPIATNTTAVGRAVNRRVEISLMP 546


>gi|34763480|ref|ZP_00144424.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886853|gb|EAA23981.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 157

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 28  TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 85  LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142


>gi|297568668|ref|YP_003690012.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924583|gb|ADH85393.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 288

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +     +   LQ I  +L    +  + I+GHTD+      A  N +LS  RA S
Sbjct: 185 LFDYDRATLQQASSKQLQGIVTLLHDHPDLRLEIQGHTDSD---GSAAYNLQLSQRRAES 241

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
               L+  G+   R+    G+        +D     + NRR++++
Sbjct: 242 VLNYLLLFGIDPSRLKS-KGYGETMPVAPNDTAENKAKNRRVELV 285


>gi|254302656|ref|ZP_04970014.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322848|gb|EDK88098.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 157

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S   PE   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 28  TIVLDERALNFDFDKSNVKPEYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G++EDRI  I      +    ++     + NRR++  +  R+
Sbjct: 85  LSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 142


>gi|282881335|ref|ZP_06290015.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304811|gb|EFA96891.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 225

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             K+++  +  V +  V+ V   T + G+    +   +  +F  S +I    +   L K 
Sbjct: 70  MDKVAAETAAQVENAKVEEV---TDKNGLKAVKVTFDSGILFASSKAILNQASKNELAKF 126

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL  + +  + I GHTD++    I   N  LS DRA S    L   GVS  +   +SG
Sbjct: 127 STVLKKNRDCHVDILGHTDSTGNDGI---NIPLSNDRAQSVVNYLKSCGVSSSQFQNVSG 183

Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338
               +    ++       NRR+++ +
Sbjct: 184 MGSSQPVATNETKAGRQQNRRVEVYL 209


>gi|150007641|ref|YP_001302384.1| outer membrane lipoprotein [Parabacteroides distasonis ATCC 8503]
 gi|149936065|gb|ABR42762.1| outer membrane protein, putative OmpA domain protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 445

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE++  + +I +++  + +   S+ GHTD++        N  LS  R+ + 
Sbjct: 344 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 400

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L++ G+S DR+S  SG         +  D   + NRR++ +
Sbjct: 401 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 443


>gi|329297799|ref|ZP_08255135.1| putative outer membrane lipoprotein [Plautia stali symbiont]
          Length = 177

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD SS+   P     L  +  VL   
Sbjct: 40  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSSSANLKPAGANTLTGVAMVLKEY 98

Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G TD++  R +   N RLS  RA S    L+  GV+++R+ +  G       
Sbjct: 99  PKAAVNVVGFTDSTGTRAL---NMRLSQQRAESVASALIVQGVAQNRL-RTQGMGPDNPV 154

Query: 322 IASDPMN--SANRRIDI 336
            ++      + NRR++I
Sbjct: 155 ASNSTEAGKAQNRRVEI 171


>gi|254510549|ref|ZP_05122616.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221534260|gb|EEE37248.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 223

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 17/204 (8%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                 +  + +  G  +        + +      L   +           +L   A ++
Sbjct: 30  PADPNQNAKQGALLGGLIGAGVGAIANDSDPLLGALAGGAIGAAGGGVIGNQLDRQAAEL 89

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L+         G++       +++++    N   F   SS   P     L ++G+ L
Sbjct: 90  RQQLAN-------DGIIITNAGDRLIVTV---PNDITFATDSSTVNPALRADLVRVGQNL 139

Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  + + GHTD++     A  N  LS  RA S   +L  +GV+  R+S I G   +
Sbjct: 140 VRYPNSSVQVIGHTDST---GEASYNQGLSERRARSVADILQANGVNGARLSTI-GLGEN 195

Query: 319 RLKIAS--DPMNSANRRIDILVED 340
           R   ++      + NRR+DI +  
Sbjct: 196 RPAASNLTPEGRARNRRVDIEIIP 219


>gi|330830616|ref|YP_004393568.1| putative porin [Aeromonas veronii B565]
 gi|328805752|gb|AEB50951.1| putative porin [Aeromonas veronii B565]
          Length = 512

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETT----RTGILISIIDQRNTPMFDKSSSIP 244
           + RLQ+L +        +  + +        T      G++  I D     MF   S+  
Sbjct: 84  QSRLQELDRIAKEENLNIATEKLTVAEPSAVTGVPQDAGLVAQIPDS---GMFAIGSAQL 140

Query: 245 LPETIVVLQKIG-----EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
               + V+ K+         A ++    I + GH+DA+     A  N RLS  RA +  +
Sbjct: 141 TESGLRVVTKLAQLYSKPAAADASNARRILLVGHSDAT---GPAELNLRLSEQRARAVGK 197

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDIL-VEDRQG 343
           +L+ SG+    I      +   +   SDP +   NRR++I+ + + Q 
Sbjct: 198 ILVASGIPASFIYYQGAGSSRPIADNSDPLLRGQNRRVEIVELANEQA 245


>gi|124004618|ref|ZP_01689462.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123989741|gb|EAY29270.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 247

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S      T   L  I ++L    +  + I GHTD+       + N  LSL RA  
Sbjct: 144 LFPSGSPQINSGTYTQLNAIVKLLKKYPKARLLIEGHTDSV---GNTQKNKALSLKRASF 200

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                ++ G++  R+ K+ G        ++D     S NRRI++
Sbjct: 201 VQAYFVRQGIAAHRL-KVIGKGATTPIASNDTAVGRSKNRRIEV 243


>gi|322417908|ref|YP_004197131.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320124295|gb|ADW11855.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 169

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +  I  ++       + + GHTD          N +LS DRA + 
Sbjct: 65  FKTGKAEVDPACDRTMTAIAAIMTDYPGFHVQVDGHTDNV---GKPEANMKLSQDRADAV 121

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            + L  K GV   R+S   GF   +   ++      + NRR+D  V
Sbjct: 122 VKYLAEKKGVDAKRLSA-KGFGDTQPIASNKTKAGQAKNRRVDFTV 166


>gi|163787037|ref|ZP_02181484.1| membrane protein, OmpA family [Flavobacteriales bacterium ALC-1]
 gi|159876925|gb|EDP70982.1| membrane protein, OmpA family [Flavobacteriales bacterium ALC-1]
          Length = 531

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLD 290
            +  +FD   S   PE ++ L+++ + ++   +  + I GHTD       + +N  LSL 
Sbjct: 422 DSKVLFDSGKSELKPEGLLALKELAKNISVLKSGNVIIEGHTDDV---GSSENNKNLSLA 478

Query: 291 RAYSAYQVLMKSGVSEDRIS--KISGFAHHRLKIASDP--MNSANRRIDILVED 340
           RA S    L K  +   +    +  G+   +  + ++     + NRR++IL+  
Sbjct: 479 RAKSVSTELKK--LIPSKTFKWREKGYGEKKPLVENNSEKNRTKNRRVEILILP 530


>gi|78061843|ref|YP_371751.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77969728|gb|ABB11107.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 404

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           R  +L  LA+ +   L   VA   V+ +  ++ R  + +       + MF    +   P 
Sbjct: 254 RASQLDVLARNLEQQLRDEVAAGNVELIR-DSGRNALTLRF-----SGMFGPGEATVAPW 307

Query: 248 TIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGV 304
              V+   G  +A  T+   + + G+ D++P  +     N  LS  RA    Q+L+ +GV
Sbjct: 308 GASVVASAGREIAAVTKGATLRVAGYADSTPISSTRQASNQVLSDVRARHVAQILVAAGV 367

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           S  RI  + G         +      + NRR+++ + D
Sbjct: 368 SAPRI-SVEGNGDADSLADNGTASGRARNRRVEVTISD 404


>gi|260428759|ref|ZP_05782736.1| inner membrane lipoprotein YiaD [Citreicella sp. SE45]
 gi|260419382|gb|EEX12635.1| inner membrane lipoprotein YiaD [Citreicella sp. SE45]
          Length = 221

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +++++       +F   S+    +    ++ +G  L    
Sbjct: 87  EAELRQQLGNNVSINNTGDRLVVTM---PQDILFPFDSAALRSDLQADIRTVGRSLLQYP 143

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + GHTD+      A  N +LSL RA +   VL+  GV   RI  I G    +   
Sbjct: 144 NTTVQVLGHTDSD---GDAAYNQKLSLRRAQAVSSVLIAEGVPSSRIQSI-GRGEDQPIA 199

Query: 323 AS--DPMNSANRRIDILVED 340
           ++        NRR++I++  
Sbjct: 200 SNLTAEGKQQNRRVEIVILP 219


>gi|305665009|ref|YP_003861296.1| OmpA/MotB protein [Maribacter sp. HTCC2170]
 gi|88707423|gb|EAQ99668.1| OmpA/MotB [Maribacter sp. HTCC2170]
          Length = 404

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVL-A 260
           S   AD +            + I + +       +F       L +    L ++  +L  
Sbjct: 263 SAEPADFVQNPTAIRNNDRNL-IVLNETHLFENVLFHFDKYDLLGQAKNELDRVYRILEN 321

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S+  ISI GHTD+         N  LS  RA S     ++ G+S +RI   +G      
Sbjct: 322 DSSLSISIYGHTDSV---GAESYNLELSKLRAKSVANYFVELGLSSNRIKS-TGKGSSEP 377

Query: 321 KIASDPMNSA--NRRIDILVEDRQ 342
             ++   N    NRR++ ++ +++
Sbjct: 378 IASNASENGRKMNRRVEFVLSNKK 401


>gi|300723714|ref|YP_003713021.1| putative outer membrane protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297630238|emb|CBJ90889.1| putative outer membrane protein [Xenorhabdus nematophila ATCC
           19061]
          Length = 161

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           GL A+ I  +K   F+ T  G    +       +F  + S   PE    L+++  VL+  
Sbjct: 27  GLTAEQITTLKQQGFQQTDEG---WLFGMSEKVLFGNNQSHLRPEGEAKLKELASVLSKV 83

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
                 + GHTD   +  ++ +N +LSL RA +    L   G+    ++   G    +  
Sbjct: 84  GIHHARLDGHTDN--YGEVSYNN-QLSLKRANTVADALTDGGMQRANLT-TRGLGPSQPI 139

Query: 322 IASDP--MNSANRRIDILV 338
             +      + NRR+ I++
Sbjct: 140 ADNRSSKGRAENRRVAIVI 158


>gi|189219864|ref|YP_001940505.1| Flagellar motor protein [Methylacidiphilum infernorum V4]
 gi|189186722|gb|ACD83907.1| Flagellar motor protein [Methylacidiphilum infernorum V4]
          Length = 311

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKIL 184
           + E+ +    N +Q           ++ G  L    +L EK+    +        +E + 
Sbjct: 60  KEEDELLKQENQKQRAVVDQLQAELAQTGSLLKSQEELLEKTTQSLKAVESKKRQEEAVS 119

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +    + ++A+K+++  +  +       +        I+I       + +F       
Sbjct: 120 THENFTLIHEMAQKLNALFAEEIQKGESWVI---QNPQNIVIRFS---KSALFSYGGIKI 173

Query: 245 LPETIVVLQKIGEVLAH-STE----VISIRGHTDASP----FRNIARDNWRLSLDRAYSA 295
                 +L+K+   L           I +  +TD  P     +N+   NW +S  R+ + 
Sbjct: 174 SNSGKALLEKLITALKPYLDNSKEAKIEVCAYTDNDPPALEVQNVYPTNWEISAMRSAAV 233

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            + L++     + I  ++     +    +        NRR++I +
Sbjct: 234 IRTLIQLSQLPEDIFSLAAGGATKPIADNSFQEGKEKNRRVEITL 278


>gi|146307120|ref|YP_001187585.1| OmpF family protein [Pseudomonas mendocina ymp]
 gi|145575321|gb|ABP84853.1| OmpF family protein [Pseudomonas mendocina ymp]
          Length = 327

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E+   ++ + + +    +  + + GHTD+         N  LS  RA + 
Sbjct: 220 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 276

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV  +R++ + G+   R     A+D   + NRR++
Sbjct: 277 RNVLVNQYGVDGNRVNAV-GYGETRPVADNATDSGRAINRRVE 318


>gi|255013830|ref|ZP_05285956.1| outer membrane lipoprotein [Bacteroides sp. 2_1_7]
          Length = 435

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE++  + +I +++  + +   S+ GHTD++        N  LS  R+ + 
Sbjct: 334 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 390

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L++ G+S DR+S  SG         +  D   + NRR++ +
Sbjct: 391 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 433


>gi|124267239|ref|YP_001021243.1| outer membrane protein [Methylibium petroleiphilum PM1]
 gi|124260014|gb|ABM95008.1| outer membrane protein [Methylibium petroleiphilum PM1]
          Length = 235

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++++  + +  +  G   D      +  T    + +++    +   FD   S   PE  
Sbjct: 83  KKMEEKRRAMEQSTQGTGVD------VTRTADNQLKLNV---PSDISFDTGKSAIKPELR 133

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL      LA+     + + GHTD++    I      LS+DRA S    L   G+   R
Sbjct: 134 TVLDSFANGLANDPALQVRVIGHTDSTGSDAINNP---LSVDRAQSVRDYLAGRGILPTR 190

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           I   SG   H     +  +   + NRR++IL+ + +
Sbjct: 191 IE-TSGRGSHEPIADNTSEAGRAKNRRVEILLREPE 225


>gi|253699032|ref|YP_003020221.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251773882|gb|ACT16463.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 459

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE    +  +G  +         I GHTD     N    N  LS  RA S 
Sbjct: 228 FDIDKAEIRPEYKDEVATVGNFMKQYPTTTAVIEGHTDN--VGNPEY-NLDLSKRRAQSV 284

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
              L+ + G+   R+    GF   R   A+  D    ANRRI+ +++
Sbjct: 285 VDYLVDNYGIERSRLEA-RGFGMARPIAANSTDEGRQANRRIEAIID 330



 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P     + K+GE +         I GHTD       +  N +LS  RA +A
Sbjct: 352 FDSGKADIKPLYRGEMAKVGEYMNKYPTTTAVIEGHTDNV---GGSDYNMKLSQQRAENA 408

Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
            Q L+++ G+ + R+S   G+ + R     ++    + NRRI+ +++
Sbjct: 409 VQYLVQNFGIDKSRLSA-KGYGYTRRIAYNSTPEGRAKNRRINAVID 454


>gi|189499949|ref|YP_001959419.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495390|gb|ACE03938.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides BS1]
          Length = 229

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           + D AK+I         DN V G   E    GI + + D     +F   SS     +   
Sbjct: 79  MDDQAKEI---------DNQVDGAQVERVGEGIRV-VFDT--GLLFSTGSSTLTSTSSYN 126

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +QK+  +L   ++  I + GHTD+         N +LS  RA S   +L    VS+ RIS
Sbjct: 127 IQKLANILNKYSDTDIVVEGHTDSQ---GSETYNQQLSEKRAESVSSLLRAYNVSKSRIS 183

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338
            I G+   R   +++  +    NRR+++L+
Sbjct: 184 TI-GYGETRPVASNETASGRKLNRRVEVLI 212


>gi|255594982|ref|XP_002536202.1| conserved hypothetical protein [Ricinus communis]
 gi|223520472|gb|EEF26178.1| conserved hypothetical protein [Ricinus communis]
          Length = 113

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F+ + S   P+    + ++  VL+ + + + + GHTD          N +LS  RA S 
Sbjct: 2   LFNFNESSLRPDAGPAIARVVVVLSRTQKPMIVEGHTDNV---GTREYNQQLSEARAKSV 58

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L + G+S  RI+ + G+A  R    +D     + NRR +I+V+
Sbjct: 59  ANELERRGISASRITLV-GYAFDRPVADNDTPEGRARNRRTEIVVK 103


>gi|89056405|ref|YP_511856.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88865954|gb|ABD56831.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 658

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 94/300 (31%), Gaps = 14/300 (4%)

Query: 49  LVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE---- 104
           + +     T  +    +    +     + +    + + +     +   +   + D+    
Sbjct: 316 VTLIAAQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAAGPARFTATFDQAQGV 375

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
            +        IG + Q             ++  + ++  +    R       L +  D  
Sbjct: 376 RLRGRLPGGAIGQSVQAFAAATFGAGTTDIATREVADLPQGWSIRVMAGLTALSQLEDGV 435

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG- 223
            +I  +           ++++   ++  +DL       +  +  D  +  V  + T    
Sbjct: 436 LTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDM-NVAYDEALDPVASQPTPQEC 494

Query: 224 -ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA 281
              I  I       FD  S+        VL +I E+L       + I GHTDA       
Sbjct: 495 EARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSMEIGGHTDAQ---GGE 551

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             N  LS  RA +    L+  GV    ++   G+   +    ++  +    NRRI+  + 
Sbjct: 552 TMNLNLSQSRANAVLNGLLARGVLVSNLAA-QGYGESQPIADNETEDGREQNRRIEFRLL 610


>gi|94970975|ref|YP_593023.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553025|gb|ABF42949.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 407

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + +   PE+   L ++G +L A+S+  + ++GHTD          N  LS  RA S
Sbjct: 299 LFDFNKATLQPESDGPLGQVGALLTANSSLNVEVQGHTDNV---GTDAYNQTLSEARAKS 355

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
               L + GV+  R++   G+          +D     NRR++I
Sbjct: 356 VMTWLTQHGVAPGRMTA-KGYGKTMPVADNKTDDGRMKNRRVEI 398


>gi|226946867|ref|YP_002801940.1| OmpA/MotB family protein [Azotobacter vinelandii DJ]
 gi|226721794|gb|ACO80965.1| OmpA/MotB family protein [Azotobacter vinelandii DJ]
          Length = 261

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 13/233 (5%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
                   +  +  L+ N      +           + +E       S +    +     
Sbjct: 24  PNPNLEQARAAFTALQGNPRAGQLAPLETQDAAKQLKQAEDSYQSGASEERVDQLAYLTQ 83

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILISIID 230
             +    +  +L    ++  Q  +++  + L    A    + + +    T  G L++  D
Sbjct: 84  RRVEFAEQTILLRNAEREFQQTSSQRAEARLQARDAQIRQLQEELQASHTERGTLVTFGD 143

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
                +FD + +   P  +  +QK+ + L  + +  + + G+TD++        N  LS 
Sbjct: 144 ----VLFDYNRAELKPGGMHNVQKLADFLRANPQRQVIVEGYTDST---GSDAYNRDLSE 196

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            RA +    L+K G+   RI    G   +      AS    + NRR+++ + D
Sbjct: 197 RRAGAVRIALIKMGIDPRRI-ATQGHGKNYPVTSNASPAGRAMNRRVEVTISD 248


>gi|160896293|ref|YP_001561875.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160361877|gb|ABX33490.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 244

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + ++   +++     G   +      + +T    + +   D  +   FD + S       
Sbjct: 72  QNMEKQKREMEQATQGTGVN------VSQTADNQLKL---DIPSDISFDTNRSDIKGNFA 122

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L +  E L ++    + I GHTD++    I      LSLDRA S    L   GVS  R
Sbjct: 123 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLDRANSTRNYLTMRGVSGAR 179

Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           I    G   H+   ++D     + NRR++I V
Sbjct: 180 I-ATEGRGSHQPVASNDSASGRAMNRRVEIFV 210


>gi|330504865|ref|YP_004381734.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328919151|gb|AEB59982.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 218

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 213 KGVLFETTRTGILISII---DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAH-ST 263
           +      T  G  + +    D     M     F  +S+         L  +  V    + 
Sbjct: 83  QEAKLRQTLQGTGVQVQRNGDDLKLIMPGNITFASNSADISSSFYPTLNSLVLVFKEFNK 142

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321
             ++I GHTD++        N  LS  RA S    L  +GV   RIS   G    +    
Sbjct: 143 NGVNIVGHTDST---GSQELNQSLSQRRAQSVANYLTANGVPGQRISA-YGAGPSQPIAS 198

Query: 322 IASDPMNSANRRIDI 336
            A+D   + NRR++I
Sbjct: 199 NATDAGRAQNRRVEI 213


>gi|319638563|ref|ZP_07993325.1| hypothetical protein HMPREF0604_00949 [Neisseria mucosa C102]
 gi|317400312|gb|EFV80971.1| hypothetical protein HMPREF0604_00949 [Neisseria mucosa C102]
          Length = 226

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
               E  R G  I ++   N   F   S+    +    L    + L    +  ++I GHT
Sbjct: 90  NTNIEVERQGNQIKLVMPENVT-FATGSAALSGQAQSALSAAAQTLVQYPDTTLTINGHT 148

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D +        N  LS +RA S    L   GVS  R+    G+   +   ++      + 
Sbjct: 149 DNT---GNDAINEPLSRNRAESVATFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204

Query: 331 NRRIDILVEDRQ 342
           NRR++IL+   Q
Sbjct: 205 NRRVEILINPDQ 216


>gi|326772523|ref|ZP_08231807.1| hypothetical protein HMPREF0059_00908 [Actinomyces viscosus C505]
 gi|326637155|gb|EGE38057.1| hypothetical protein HMPREF0059_00908 [Actinomyces viscosus C505]
          Length = 417

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281
           G +I++ D     +FD  SS    E    L  +  V+  S    + I+GHTD+    +  
Sbjct: 298 GTVITLEDS---VLFDFGSSELRGEASTTLTNLATVIKDSKAPKVQIQGHTDSV---SDD 351

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333
             N +LS  RA +    L   GV+ D   +  G+   +    +       +P     NRR
Sbjct: 352 AFNQKLSEQRAQAVSSALKSDGVAAD--LEAVGYGETKPVAPNENPDGSDNPAGRRLNRR 409

Query: 334 IDILV 338
           +++ V
Sbjct: 410 VEVFV 414


>gi|288959276|ref|YP_003449617.1| outer membrane protein [Azospirillum sp. B510]
 gi|288911584|dbj|BAI73073.1| outer membrane protein [Azospirillum sp. B510]
          Length = 146

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S++  PE+  VL K+  V+  + T    I GHTDA         N  LS  RA + 
Sbjct: 44  FDFNSAVIKPESRAVLDKVAAVMTTAGTTRFRIVGHTDAV---GGDAANLALSKRRAAAV 100

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            + L      +    ++SG     L +   P  +ANRR++I+
Sbjct: 101 VEYLASRHRIQRDRLEVSGMGARELLLPDQPTAAANRRVEII 142


>gi|157368311|ref|YP_001476300.1| putative outer membrane lipoprotein [Serratia proteamaculans 568]
 gi|157320075|gb|ABV39172.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 220

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  ++I G+TD++  R +      LS  RA      L+  GV+ +R+ + SG       
Sbjct: 142 PKTAVNIIGYTDSTGSRALNMT---LSQQRADGVGSALITQGVAANRV-RTSGAGPDNPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTTEGKAQNRRVEITLSPLQ 220


>gi|253701635|ref|YP_003022824.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251776485|gb|ACT19066.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 432

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P+    L+ + + L         I GHTD          N +LS  RA   
Sbjct: 326 FDTNKADLKPQYRAELKALADFLNEFPNATGVIEGHTDNV---GPKALNMKLSQLRADKI 382

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
              L+K  G++ +RI  I G+   +   ++      + NRRI+
Sbjct: 383 RNSLIKEFGIAPERIKAI-GYGPAKPVASNKDKAGKAKNRRIE 424


>gi|39995916|ref|NP_951867.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982680|gb|AAR34140.1| OmpA domain protein [Geobacter sulfurreducens PCA]
 gi|298504930|gb|ADI83653.1| OmpA domain porin [Geobacter sulfurreducens KN400]
          Length = 466

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    ++++ + L         I GHTD          N RLS  RA S 
Sbjct: 233 FDIDKADVRPQYHDEVKRVADFLKEYPSTTAVIEGHTDNV---GDDAYNMRLSQRRAESV 289

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
              L+ + G+   R+S   GF   R    +        NRRI+ +++
Sbjct: 290 VNYLVDNFGIDRTRLSA-RGFGKTRPIADNSTEAGKQRNRRIEAIID 335



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           K + +A    +  +   ++I + +   + D  V   L +     + +          FD 
Sbjct: 311 KTRPIADNSTEAGKQRNRRIEAIIDCALEDPKVIAALPDRLCIALKVQ---------FDT 361

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
                 P+    + K+G+ +  +      I GHTD       A  N +LSL RA +    
Sbjct: 362 DKWDIKPQYRGEIAKVGDFMTRNPTTTAIIEGHTDRV---GTADHNMKLSLRRAEAVVNY 418

Query: 299 LMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           L++  G+   R+S   G+   R     ++    + NRRI+ +++
Sbjct: 419 LVEHFGIERSRLSA-KGYGFSRPIAYNSTAEGRALNRRINAIID 461


>gi|293609016|ref|ZP_06691319.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829589|gb|EFF87951.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 217

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDQKEKKLRQQMAGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GVS  RI 
Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVRSYLASQGVSASRID 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +   +    NRR++I +  +Q
Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217


>gi|316935074|ref|YP_004110056.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315602788|gb|ADU45323.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 446

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
            ++ +       F++ S++    +  +L K+   +       I + G+TDA         
Sbjct: 333 RVTAVASAEKINFERRSAVIDKASQPLLGKLAAAIKQCPAVTIEVAGYTDA---AGKKST 389

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           N  LS  RA +    L K+G+   ++    G+   +   ++D     + NRRI+ +V+
Sbjct: 390 NLALSKRRAEAVVASLTKAGIGSVKLVA-EGYGSAKPIASNDTAEGRAQNRRIEFVVK 446


>gi|163757275|ref|ZP_02164371.1| OmpA/MotB [Kordia algicida OT-1]
 gi|161322760|gb|EDP94113.1| OmpA/MotB [Kordia algicida OT-1]
          Length = 617

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 225 LISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
           +++I D         FD  SS        +L  I   L   +   ISI GH D+   R  
Sbjct: 497 VVTIPDPAVGERKVYFDFDSSKLDQNAKEILDNIAANLKNDAGYNISIIGHADS---RGT 553

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            R N +LS++RA +    L    +S   I+ I+G         +      + NRR+++++
Sbjct: 554 DRYNDKLSVERAQAIKNYLDSKKLSNSNIT-ITGKGESAPIAPNTTPEGRAKNRRVELII 612


>gi|78778212|ref|YP_394527.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
 gi|78498752|gb|ABB45292.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
          Length = 348

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S      ++  +++  E L         I GHTD+       +DN +LS +RA S 
Sbjct: 245 FDTASYKVDNASMPKVKEFAEFLKDMPNYNAKIVGHTDSV---GSDKDNQKLSENRANSV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
             +++K G+   RI+   G         +D     + NRRI+
Sbjct: 302 KTLIVKEGIDTKRIT-TEGKGEKSPIATNDTKEGKAQNRRIE 342


>gi|317014225|gb|ADU81661.1| flagellar motor protein MotB [Helicobacter pylori Gambia94/24]
          Length = 257

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKTTIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKTTIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|256839827|ref|ZP_05545336.1| outer membrane lipoprotein [Parabacteroides sp. D13]
 gi|298375585|ref|ZP_06985542.1| OmpA family protein [Bacteroides sp. 3_1_19]
 gi|256738757|gb|EEU52082.1| outer membrane lipoprotein [Parabacteroides sp. D13]
 gi|298268085|gb|EFI09741.1| OmpA family protein [Bacteroides sp. 3_1_19]
          Length = 428

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE++  + +I +++  + +   S+ GHTD++        N  LS  R+ + 
Sbjct: 327 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 383

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L++ G+S DR+S  SG         +  D   + NRR++ +
Sbjct: 384 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 426


>gi|149922900|ref|ZP_01911321.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149816217|gb|EDM75723.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 517

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 86/260 (33%), Gaps = 36/260 (13%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           DE   PE  S        D+    N  +      ++    +   +   +  +  Q     
Sbjct: 289 DEDGCPEPDSDG-DGFIDDKDTCPNEAETVNDYQDEDGCPESDRDGDGFWDD--QDSCPD 345

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            + T +  K +D C  +D +     +E    P   +             ++ K++++   
Sbjct: 346 EAETVNDYKDEDGCPESDRDGDGILDELDKCPDEPETANGYQDEDGCADEVPKEVAAFT- 404

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
                  +KG+                     F+  S      +   L K  +VL    +
Sbjct: 405 -----GAIKGIT--------------------FETDSDKIRKSSTRTLDKAVKVLTDFPD 439

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I + GHTD+   R     N  LS  RA S    L++ G+   RI+   GF   +    
Sbjct: 440 IRIKVTGHTDS---RGDHDHNVDLSKRRAESVKTYLVEHGIDASRIT-TDGFGPDKPVDT 495

Query: 324 SDP--MNSANRRIDILVEDR 341
           +D     + NRRI+  +  R
Sbjct: 496 NDTRAGRANNRRIEFEIVQR 515


>gi|119472020|ref|ZP_01614278.1| putative lipoprotein [Alteromonadales bacterium TW-7]
 gi|119445155|gb|EAW26447.1| putative lipoprotein [Alteromonadales bacterium TW-7]
          Length = 210

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            E  R G  + ++   N   F    S         L  I +V+    +  +S+ GHTD++
Sbjct: 85  VEVVREGDNLRLVIPSNIT-FATDQSYISTGFNDTLNAIAKVMNKYEKTYLSVEGHTDST 143

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                   N  LS +RA S    L    +   RI   SGF   R    +D  N  + NRR
Sbjct: 144 ---GQDSYNMNLSRERAQSVKAYLANQDIMAARI-STSGFGETRPIATNDTANGRAQNRR 199

Query: 334 IDI-LVEDRQG 343
           ++I +V + +G
Sbjct: 200 VEIQIVPNTEG 210


>gi|299770927|ref|YP_003732953.1| OmpA family protein [Acinetobacter sp. DR1]
 gi|298701015|gb|ADI91580.1| OmpA family protein [Acinetobacter sp. DR1]
          Length = 471

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 17/225 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
            T+Q       + +               SL    +K           +++  +    +P
Sbjct: 259 DTSQTYAASFTDKDALAGVLGALKGVPNASLEWVGDKITLKAGDAAALEALTAKVKALVP 318

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
                    +  ++ + +      + L  +  +N+    L +     + + II+      
Sbjct: 319 HTEVVGAAPVTAEQSVSNSLTASQTALGSIDPNNVDVNALVK----ALNLQIIN------ 368

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    +   +L +   +L   T   +++ GHTD++     A  N  LS  RA + 
Sbjct: 369 FASGSSDIPADNKAILDQAATLLNKVTSVKLNVGGHTDST---GNAAANKALSQRRAQAV 425

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L   GV   ++    G    +    +        NRRI+  V
Sbjct: 426 VDYLKSKGVDASKLVA-EGHGSDQPVAENTTEEGRFKNRRIEFSV 469


>gi|254508437|ref|ZP_05120557.1| outer membrane protein OmpA [Vibrio parahaemolyticus 16]
 gi|219548647|gb|EED25652.1| outer membrane protein OmpA [Vibrio parahaemolyticus 16]
          Length = 323

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +SS   PE+   L ++   +       + + G+TD++     A  N +LS  RA + 
Sbjct: 215 FELNSSKLKPESTQKLNELVAFMNQYPQSTVEVVGYTDST---GAAAYNQKLSEKRAQAV 271

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L   G+   RI+ +SG   +    +++       NRR+++ V
Sbjct: 272 ANELEAQGIDASRIT-VSGQGENNPVASNETKEGRMMNRRVEMTV 315


>gi|332525185|ref|ZP_08401360.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108469|gb|EGJ09693.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 211

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR+++  + +    +G   D      +  T    + +++    +   F    +   P   
Sbjct: 70  KRMEEKRRAMEQATAGTGID------VARTPDNELKVNV---PSDLSFAVGRADLQPSLR 120

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            VL +  + L  +   + I GHTD++        N  LSL RA +    L   GV   R+
Sbjct: 121 PVLDQFAKGLDQTM-HVRIVGHTDST---GSDAINDPLSLARARTVRDYLEDRGVPAARL 176

Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
             I+G         +  D   + NRR++I + +
Sbjct: 177 E-IAGRGSREPVADNGSDAGRAKNRRVEIFLRE 208


>gi|255624443|ref|XP_002540477.1| Inner membrane lipoprotein yiaD precursor, putative [Ricinus
           communis]
 gi|223495460|gb|EEF21906.1| Inner membrane lipoprotein yiaD precursor, putative [Ricinus
           communis]
          Length = 225

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +  R  ++ +   ++ +  ++    E         +      R +               
Sbjct: 27  NAARQRDEIRLQARTAEANQARMSAEQAKAQADQAKADADAARAQADAAANSAREEQAKN 86

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-E 264
                 +  +  + T  G++I++ D     +F+   +    E +   QK+ +VL      
Sbjct: 87  AALQQQLADLQAKQTDRGLIITLND----VLFNVDRAELSAEGMRTAQKLADVLLQEPQS 142

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           V+ + G TD++     +  N  LS  RA +    L+  GV  ++I    G+       ++
Sbjct: 143 VVLVEGFTDST---GTSSHNLDLSQRRAEAVRNALIGLGVPGNKI-ATRGYGEAYPVASN 198

Query: 325 DPMNSA--NRRIDILV 338
               S   NRR++I++
Sbjct: 199 ADAGSRQLNRRVEIVL 214


>gi|159025748|emb|CAO02048.1| outer membrane protein A [Bordetella holmesii]
          Length = 163

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 59  FFDFDKSVLKPEGRQLLDQVAQQAKAIDLETIIAVGHTDS--IGTEAY-NLKLSDRRAAS 115

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
               L+  G+  +RI    G    +      +    + NRR++I +
Sbjct: 116 VKAYLVSKGIDPNRIY-TEGKGEAQPIATNKTAEGRARNRRVEIEI 160


>gi|325525950|gb|EGD03642.1| putative OmpA/MotB family outer membrane protein [Burkholderia sp.
           TJI49]
          Length = 405

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 12/159 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R      LA+ +   L   VA   V+ +  +  R  + +  +      MF   +   
Sbjct: 252 QAQRMSPFDSLARDLEQRLRDEVAAGNVELIR-DPGRHALTLRFV-----GMFVPGAVTV 305

Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A   E  V+ + G+ D++P  +  +  N  LS  RA +  ++L+ 
Sbjct: 306 APWGASVVASAGREIASIAEGTVVRVVGYADSAPAGSARQVSNQALSEARAENVARILVA 365

Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +G+      ++ G         +  +   + NRR++++V
Sbjct: 366 AGIPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403


>gi|107103038|ref|ZP_01366956.1| hypothetical protein PaerPA_01004107 [Pseudomonas aeruginosa PACS2]
          Length = 314

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 171 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 227

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             + L  +GV E +I+ +  +      +A++     + NRR+ + +  R+ 
Sbjct: 228 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 276


>gi|166714357|gb|ABY87945.1| outer membrane protein [Acinetobacter sp. bm-8]
          Length = 355

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
           +I  ++      FD + S    +    + K+ E L         I GHTD +      + 
Sbjct: 226 VIEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLNEYPNATARIEGHTDNT---GPRKL 282

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           N RLSL RA S    L+     +       GFA  +    ++     + NRR+
Sbjct: 283 NERLSLARANSVKSALVSEYNIDSSRLAAQGFAWDQPIADNNTKEGRAMNRRV 335


>gi|85714945|ref|ZP_01045930.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85698142|gb|EAQ36014.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 209

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 15/179 (8%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           ++      LS  +I+   +  R + L+ +   +LS     N+ +     +  +G    + 
Sbjct: 25  KDQALAGELSARQIVDSLKAPRTRSLSVEERPSLSADELTNLTRIRRTRSLSSGDRAQMA 84

Query: 230 DQRN-------TPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRN 279
           +             FD  S+    +    L  +G+ L     +  VI + GHTDA   + 
Sbjct: 85  EIAGKRPGVDLQIYFDFDSAELSAKAEPQLNNLGQALTSPELAGSVIMLGGHTDA---KG 141

Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             R N  LS  RA +  + L++   +S + +  + G+   RLK  +DP  + NRR++I+
Sbjct: 142 SDRYNQSLSERRAETIKRFLIERYKISPENLVAV-GYGESRLKNKADPDAAENRRVEIV 199


>gi|254779211|ref|YP_003057316.1| flagellar motor protein MotB [Helicobacter pylori B38]
 gi|254001122|emb|CAX29077.1| Chemotaxis protein MotB (Motility protein B) [Helicobacter pylori
           B38]
          Length = 257

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV 
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLMQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|255531842|ref|YP_003092214.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255344826|gb|ACU04152.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 445

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 26/298 (8%)

Query: 63  KAIEQYFNPFGKN---LMTASKGIFDEQNPPERSSQN-------KIDLSIDEHITKNSVD 112
           KA   Y N         ++A++G  +    P  +           +DL  D +  K+   
Sbjct: 151 KAGAGYMNAGATTTNVPLSANEGYKERWFVPVGAGFKLGVAKGINVDLGYDVNFVKSDKF 210

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN-KEE 171
               S  +  ++      + +   S++    +N  +  + + +   +S +L ++++  E+
Sbjct: 211 DGFNSGGKNDKFSYGHIGLEFALGSKEKPQLQNYSSLANLRKQSKEESDELRRALSTAEQ 270

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILISI 228
           N         K +       + +   K   T SG V D     +K        T ++++ 
Sbjct: 271 NAARDREQYAKDMGDDDNDGVANKFDKCPGTASGTVVDGSGCPIKVQREVIKETKVVVTE 330

Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
            D++          FD   +    ++   L K+  +L      + + GHTD +       
Sbjct: 331 ADRKVVDEAIKNLEFDLGKATIRAKSYATLNKVAALLIEKNFSLKLAGHTDNT---GSMA 387

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            N RLS +RA +    L+  G +  RI   +G+  ++   ++        NRR++  +
Sbjct: 388 LNLRLSKERAEAIKAYLVSQGANASRIEA-TGYGPNQPIASNKTAEGRQKNRRVEFTL 444


>gi|309782736|ref|ZP_07677457.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
 gi|308918514|gb|EFP64190.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 274

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 185 AMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
             +R++   D+A  +  + +   GL    + +  L + T    +I          F+  S
Sbjct: 126 EAQRQQLTSDMATALGQSYTIKNGLRVAAVSEQGLLDQTLANRIIE---------FETGS 176

Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   P+   +L ++  VL       I I GHTD          N  LS  RA +    L+
Sbjct: 177 ATLTPKGRAILDEMAAVLPRLNGRKIEIVGHTDN---SGSRALNLNLSQARAETVKNYLI 233

Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             G  +  ++ + G    +   A+  D   S NRRI+
Sbjct: 234 AKGAEQGTLTAM-GVGPDQPVAANNTDEGRSRNRRIE 269


>gi|311746921|ref|ZP_07720706.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
 gi|126578612|gb|EAZ82776.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1]
          Length = 562

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 115/313 (36%), Gaps = 43/313 (13%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +AD MT            +         I Q F+     ++   K + D  N        
Sbjct: 280 FADLMT-----------FSTKVPLE---IPQEFSTAPPAILPPKKALADVSN-------- 317

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             + S +E +T   +  K      +   ++++        ++ +E              D
Sbjct: 318 --NKSSNEEVTLAPIYPKSSIGKPEVSMEQIQQMAEAKPVAEVTEAQTPEENPVEWLVLD 375

Query: 157 LCKST--DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK----ISSTLSGLVADN 210
              ST  D E      +N  +   S    L+  ++  +  +  K        L+    + 
Sbjct: 376 GKNSTRLDYEMKFFNGKNEVIFEDSSAYTLSFLKESNVNLIKVKSAGFFPKELTLKDINP 435

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST-EVISI 268
           + K V+  T      + +++  N   F + ++     ET  VL ++ E L+ ++   + I
Sbjct: 436 LDKTVVLMTKLESGSVLLLENVN---FKRGTAELEGEETEAVLSELAEFLSENSSVKLRI 492

Query: 269 RGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325
            GHTD           N  LSLDRA S    L+  GV+ + + +I+G+   R     A++
Sbjct: 493 NGHTDG----GGDPSLNKGLSLDRARSVRDYLVDHGVTFENL-RIAGWGGTRPIASNATE 547

Query: 326 PMNSANRRIDILV 338
              S NRR+++ V
Sbjct: 548 SGRSKNRRVELEV 560


>gi|298481010|ref|ZP_06999205.1| lipoprotein PG3 [Bacteroides sp. D22]
 gi|298273033|gb|EFI14599.1| lipoprotein PG3 [Bacteroides sp. D22]
          Length = 255

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 83  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 131

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 132 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 191

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 192 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 238


>gi|294506240|ref|YP_003570298.1| Outer membrane protein A [Precursor] [Salinibacter ruber M8]
 gi|294342568|emb|CBH23346.1| Outer membrane protein A [Precursor] [Salinibacter ruber M8]
          Length = 285

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D  +     E    GI ++     +  +FD  SS    E    L +  E +    +  I 
Sbjct: 140 DEELDNADVERVGEGIKVTF---DSGILFDFDSSTLRAEARQNLTEFAESMQGFEDTKIL 196

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GHTDA         N +LS  RA SA + L+  GV   R++ + G        +++  
Sbjct: 197 VVGHTDAQ---GSEEYNQKLSDRRAESATRHLVDRGVDPSRLTSV-GRGETEPVASNETE 252

Query: 328 NSA--NRRIDILV 338
                NRR+++ +
Sbjct: 253 EGRQQNRRVEVAI 265


>gi|86606634|ref|YP_475397.1| OmpA family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555176|gb|ABD00134.1| OmpA family protein [Synechococcus sp. JA-3-3Ab]
          Length = 273

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 82/278 (29%), Gaps = 22/278 (7%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
              F      ++    GI+     P+      + +   +  T   +              
Sbjct: 11  ATVFLNLSSGILLVGSGIWAGMVLPQPLQTQPLPVPQPQANTPPLLPTLSPPQASLPAVS 70

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
              ++     N   S   +  +    ++   L     +E+  ++ +    P  + E    
Sbjct: 71  PDADSPKGNPNHGGSTDLEREIRELRQQAIQL--LIRVEELESRLQRLSSPAAAPEPRRE 128

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                 +      + +  +     +   G    +    +           +FD   +   
Sbjct: 129 SATTAEIAPEGASVPAPTATPTPTSFQVGTRTISLPGDL-----------LFDFDKAEIR 177

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE   +L ++ + L       + + GHTD          N  LSL RA +    L  + +
Sbjct: 178 PEAASLLAEVAKSLREMPGARVQVNGHTDNI---GSLNYNLDLSLRRANAVKDYL-ANLL 233

Query: 305 SEDRISK--ISGFAHHRLKIASDPM--NSANRRIDILV 338
            ED       SGF        +D       NRR+D+++
Sbjct: 234 PEDHPISWTTSGFGPTLPVADNDTEEGRQRNRRVDLII 271


>gi|34763981|ref|ZP_00144872.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886240|gb|EAA23525.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 315

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      + GHTD+       + N  
Sbjct: 204 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNRI 260

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           LS +RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 261 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 312


>gi|149279062|ref|ZP_01885196.1| outer membrane protein, OmpA/MotB family [Pedobacter sp. BAL39]
 gi|149230341|gb|EDM35726.1| outer membrane protein, OmpA/MotB family [Pedobacter sp. BAL39]
          Length = 439

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            ++D+    + FD   ++   ++   L ++  +L      + + GHTD +        N 
Sbjct: 328 RVVDEAIKNLEFDLGKAVIRQKSYATLNRVAALLIEKNFSLKLAGHTDNT---GSMALNL 384

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           RLS DRA S    L+  G +  RI   +G+  ++      +     ANRR++  +
Sbjct: 385 RLSKDRAESVKAYLVSQGANASRIEA-TGYGPNQPIATNKTAAGRQANRRVEFTL 438


>gi|90578362|ref|ZP_01234173.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic components [Vibrio angustum S14]
 gi|90441448|gb|EAS66628.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic components [Vibrio angustum S14]
          Length = 508

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 227 SIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
            I   +  P +F   S    P     L    E L+H     I + GHT     R     N
Sbjct: 388 EIGTLKTRPVIFSSGSERLTPNGQQQLNLTAESLSHYPNFRILVEGHT---GLRGDKALN 444

Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA---NR--RIDILV 338
             LS  RA +    L+   G    RI  + G       I     +     NR  R++I +
Sbjct: 445 IELSAKRAKAVKSYLVNQLGFEASRIHAV-GKGSDEPLIQLSGESQRRYANRLMRVEIAL 503

Query: 339 ED 340
             
Sbjct: 504 MS 505


>gi|19705338|ref|NP_602833.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19705349|ref|NP_602844.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713317|gb|AAL94132.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713330|gb|AAL94143.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 151

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L  I E +  +   I+I GHTD+    + A  N++
Sbjct: 28  TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 85  LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142


>gi|90426398|ref|YP_534768.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90108412|gb|ABD90449.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 464

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +   P+++ +L ++ E  L   T  I I GHTD          N  LS  RA + 
Sbjct: 363 FESGRATIDPDSVGLLDRLIETALRCPTATIEIAGHTDGD---GDGAFNQTLSEKRAQAV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
            + ++++G+  +R   + G+          +D   + NRRI+ +V
Sbjct: 420 AEYMVRAGLPAERFRPV-GYGSTTPVAPNDNDEGKAQNRRIEFMV 463


>gi|237740698|ref|ZP_04571179.1| outer membrane porin F [Fusobacterium sp. 2_1_31]
 gi|229422715|gb|EEO37762.1| outer membrane porin F [Fusobacterium sp. 2_1_31]
          Length = 340

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL         I G+TD+         N  
Sbjct: 229 LITSDSGILFDVDKYDVRPEDKEVLKNLATVLKEMNVKNFEIDGYTDSD---GSDEHNQV 285

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS  RA S    L+  GV+ +      G+   +   ++D       NRR++I++
Sbjct: 286 LSEKRANSVKNFLVSQGVTAE--ITTKGYGESKPVASNDTAEGRQKNRRVEIII 337


>gi|302878485|ref|YP_003847049.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302581274|gb|ADL55285.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 347

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD SS+   P     L ++ +  A      ++I GHTD+   R   + N +LSL RA S 
Sbjct: 235 FDTSSAKIKPAADKKLNEVVDFAAKYKESNLAISGHTDS---RGSEKLNQKLSLSRAESV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              L+K GVS  RI+   G A  R      +    + NRR++I
Sbjct: 292 KAYLVKKGVSAARIT-TKGEASTRPVADNKTKAGRAQNRRVEI 333


>gi|319796494|ref|YP_004158134.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315598957|gb|ADU40023.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 188

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248
            RL  L   + ++  G        GV+ E T    + + I    N   FD   +      
Sbjct: 46  ARLAALKTDLEASTKGT-------GVVIEQTADNQLHVVI---PNELSFDTGRANVKRNL 95

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             VL K+ E L  +T   + + GHTDA+        N RLS+ RA S    L+  GVS  
Sbjct: 96  AQVLDKVAEGLKSATAASVRVVGHTDAT---GSEEGNERLSVSRADSVRNHLVGRGVSTT 152

Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            I+   G         +      + NRR++I V ++
Sbjct: 153 AIT-TDGRGSREPLADNGTAAGRAQNRRVEIFVAEK 187


>gi|330503542|ref|YP_004380411.1| OmpF family protein [Pseudomonas mendocina NK-01]
 gi|328917828|gb|AEB58659.1| OmpF family protein [Pseudomonas mendocina NK-01]
          Length = 326

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E+   ++ + + +    +  + + GHTD+         N  LS  RA + 
Sbjct: 219 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 275

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV   R++ + G+   R     A+D   + NRR++
Sbjct: 276 RNVLVNQYGVDGSRVNAV-GYGETRPVADNATDSGRAINRRVE 317


>gi|296271167|ref|YP_003653799.1| OmpA/MotB domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296093954|gb|ADG89906.1| OmpA/MotB domain protein [Thermobispora bispora DSM 43833]
          Length = 176

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-----RNTPMFDKSSSIPLPETIVVLQ 253
           I  ++  L   + ++ +        +   + D+      +  +F    +         + 
Sbjct: 26  IQESIRDLAVSDFIRDLTLTIEPLEVETQVGDRTTVSISSDVLFAFDKADLTEVAKRRIA 85

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           ++ + L +   V+ + GHTDA      A  N RLS  RA +  + L K+ V   +I  + 
Sbjct: 86  ELAKRLQNVKGVVLVEGHTDAL---GSAAYNLRLSRLRANAVKEELSKA-VPGLQIKAV- 140

Query: 314 GFAHHRLKIAS-------DPM-NSANRRIDI 336
           G+   R    +       +P   + NRR+ I
Sbjct: 141 GYGETRPIAPNKTKDGKDNPEGRAKNRRVTI 171


>gi|114569157|ref|YP_755837.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114339619|gb|ABI64899.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 227

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                   +        R G  + +I       F  +S+    +   +L  +  VL    
Sbjct: 89  QETAMREALSDTGVGVRREGNDLRLI-MPGDVTFATNSADIQGQFYGILSDVSTVLNRYP 147

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + GH D+      A  N +LS  RA S    L+  GV  DR   I+G        
Sbjct: 148 ATYVDVVGHADSV---GAADYNQQLSERRALSVGNYLIAQGVLRDRFY-IAGMGERSPIA 203

Query: 323 ASDPMNSA--NRRIDILVED 340
           +++       NRR++IL+  
Sbjct: 204 SNETAAGRQQNRRVEILIRP 223


>gi|254255311|ref|ZP_04948627.1| Outer membrane protein [Burkholderia dolosa AUO158]
 gi|124901048|gb|EAY71798.1| Outer membrane protein [Burkholderia dolosa AUO158]
          Length = 232

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
            I++    N   FD   +   P+    L  + +    +T   ++I G+TD++     A  
Sbjct: 122 RITLDSDAN---FDTDRATLKPDARDRLDVLIDAARGTTFQTVAIAGYTDST---GTAEH 175

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           N RLS  RA +  Q L + G+   +   + G+        +      + NRR+DI +E
Sbjct: 176 NQRLSERRAQAVAQYLREHGLRAQKFD-VRGYGESNPVATNTTAAGRAKNRRVDITLE 232


>gi|283835926|ref|ZP_06355667.1| OmpA family protein [Citrobacter youngae ATCC 29220]
 gi|291068103|gb|EFE06212.1| OmpA family protein [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR+G  I I++  N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMQGTGVSVTRSGDNI-ILNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G TD++        N RLS  RA S    L+  GV+ +RI +  G       
Sbjct: 142 DKTAVNVLGFTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTQGMGPANPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220


>gi|295691294|ref|YP_003594987.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295433197|gb|ADG12369.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 224

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G      R G  I ++   +   FD   S   P  + VL  +   L    +  I + G
Sbjct: 94  LEGSGVMIRRNGDQIVLV-MPSDVTFDVDRSDIQPRFVRVLDDVARTLNAYPQTTIDVVG 152

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--M 327
           H D+         N  LS  RA +    L   G V  DR+  ++G    +    +     
Sbjct: 153 HADS---SGADEYNQVLSERRASAVAGYLTSQGRVLPDRVF-VAGMGERQPIADNSTAAG 208

Query: 328 NSANRRIDILVED 340
            + NRR++I++  
Sbjct: 209 RAENRRVEIVLRP 221


>gi|297380015|gb|ADI34902.1| flagellar motor protein MotB [Helicobacter pylori v225d]
          Length = 255

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKSKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|325121713|gb|ADY81236.1| OmpA/MotB domain protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 255

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 39/186 (20%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +    D++ +I   +    PP      L++ + ++               + D+ +K  +
Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            E                  F+  S++       +L ++   L       + I GHTD+ 
Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAIALNKVGGKKVKIVGHTDS- 192

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
                A  N +LS DRA +    L+   +  D +    G    +    +        NRR
Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHL-STEGLGSSKPVADNTSPEGRKKNRR 249

Query: 334 IDILVE 339
           I+  V 
Sbjct: 250 IEFTVL 255


>gi|126643008|ref|YP_001085992.1| putative lipoprotein precursor [Acinetobacter baumannii ATCC 17978]
 gi|184159508|ref|YP_001847847.1| outer membrane protein [Acinetobacter baumannii ACICU]
 gi|183211102|gb|ACC58500.1| Outer membrane protein [Acinetobacter baumannii ACICU]
          Length = 126

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
               +FD + +         L ++   L       + I GHTD     N    N +LS +
Sbjct: 19  PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 75

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           RA S   + +  G  ++ I  + G    +  + +  +   + NRR+ I++  
Sbjct: 76  RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 126


>gi|326799764|ref|YP_004317583.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326550528|gb|ADZ78913.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 169

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TE-VISIR 269
           ++G     T  G++++     +  +F  +SS    +  V ++ +   +  +     I I 
Sbjct: 44  IEGGTVSRTDEGVVLTF---ESDVLFATNSSYLSEKAKVTMKNMVAYINKNYPNAQIQIN 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTD++       + W LS  RA S     +  G++   I K  G+   +    +   + 
Sbjct: 101 GHTDST--GEADYNQW-LSEKRAASVKNYAVSIGLNGSNI-KTKGYGKSKPVATNSTADG 156

Query: 330 A--NRRIDILVE 339
              NRR+++++ 
Sbjct: 157 RQKNRRVEVIIL 168


>gi|332879337|ref|ZP_08447034.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682757|gb|EGJ55657.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 422

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S    E+   L ++   L  +   I ++GHTD          N +LS  RA +  
Sbjct: 321 FDFGKSTIKTESYAYLNRLANTLVRTHARIEVKGHTDNV---GTEEFNMKLSHKRAQAVV 377

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             L+  GV +D++   S +   +    +D       NRR++  + 
Sbjct: 378 DYLIGRGVDKDKL-SYSYYGMSKPLTTNDTEEGRTMNRRVEFEIL 421


>gi|332533226|ref|ZP_08409093.1| putative lipoprotein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037305|gb|EGI73760.1| putative lipoprotein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 210

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            E  R G  + ++   +   F    S         L  I +V+    +  +SI GHTD++
Sbjct: 85  VEVVREGDNLRLV-MPSNITFATDQSYISSGFNDTLDAIAKVMNKYEKTYLSIEGHTDST 143

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
                   N  LS +RA S    L+   +  +R+    G+   R    +D  N  + NRR
Sbjct: 144 ---GKDSYNMNLSRERAQSVKNYLVNQQIMAERV-STMGYGETRPIATNDSANGRAQNRR 199

Query: 334 IDILVED 340
           ++I +  
Sbjct: 200 VEIQIVP 206


>gi|325121211|gb|ADY80734.1| OmpA domain protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 217

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
                  + KS            +   +L       L    KK+   ++G        GV
Sbjct: 41  GAAAGYGISKSNANSSRQNNRAAAIGAVLGAAGGVYLDQKEKKLRQQMAGT-------GV 93

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDA 274
                  G +  I+    +  FD + S   P     L K+ + LA  +   I + G+TD 
Sbjct: 94  DVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYATLNKVAQTLAEDNKSAILVTGYTDN 151

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
           +        N  LS  RA S    L   GVS  RI    G+        +   +    NR
Sbjct: 152 T---GNDSINIPLSQARAQSVRSYLASQGVSASRIDA-QGYGSSNPIADNSTASGREQNR 207

Query: 333 RIDILVEDRQ 342
           R++I +  +Q
Sbjct: 208 RVEISIYAKQ 217


>gi|124005143|ref|ZP_01689985.1| outer membrane protein, putative [Microscilla marina ATCC 23134]
 gi|123989395|gb|EAY28956.1| outer membrane protein, putative [Microscilla marina ATCC 23134]
          Length = 329

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L ++ ++L       I I  HTD+   R     N RLS  RA S 
Sbjct: 226 FATKSARLNTHSFEELGRVVKLLKDHPTSHILIEAHTDSDGTRLA---NLRLSQQRAKSV 282

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           Y  LMK G++  R+ +  G    +    ++     + NRR +++V  +
Sbjct: 283 YNYLMKQGIAAQRL-QTRGAGELKPIAPNNTEINKARNRRFELIVMKK 329


>gi|110638581|ref|YP_678790.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281262|gb|ABG59448.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 694

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267
             + + +      TG  I +    N   FD   S    E+   L +  E++  + T  I 
Sbjct: 567 KELERNLYLAPLITGQTIRL----NNLFFDTGKSDLRKESYAELNRTVELMKLYLTMTIE 622

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD         +N  LS +RA +    L+  G+   R+    G+   +    +D  
Sbjct: 623 ISGHTDNV---GGDAENQTLSENRAKAVVNYLVSHGIDASRVQS-KGYGKTKPVSTNDTD 678

Query: 328 NSA--NRRIDILV 338
           +    NRR+D  +
Sbjct: 679 HGRQLNRRVDFTI 691


>gi|83952523|ref|ZP_00961254.1| OmpA domain protein [Roseovarius nubinhibens ISM]
 gi|83836196|gb|EAP75494.1| OmpA domain protein [Roseovarius nubinhibens ISM]
          Length = 203

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L  D     V    T   +   I+      +F   SS         L  +   
Sbjct: 64  LDKQAAELERDLNNDSVTVNNTGDRL---IVTMPQDILFAIDSSTVNSGLRGDLLTVARS 120

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L    +  + + GHTD +     A  N  LS  RA +   VLM  GV+  RI +  G   
Sbjct: 121 LQSYPDTTVQVVGHTDNT---GSAAHNQALSERRANAVADVLMNGGVAFSRI-QTYGRGE 176

Query: 318 HRLKIAS--DPMNSANRRIDILVED 340
            +   ++      + NRR++I++  
Sbjct: 177 DQPLASNLTAEGRAQNRRVEIVILP 201


>gi|115375600|ref|ZP_01462857.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823151|ref|YP_003955509.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367376|gb|EAU66354.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396223|gb|ADO73682.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 249

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + +    E    L  + + +  S+  I+++GH D    R     N +LS  RA +  
Sbjct: 150 FGFNEASLSSEAQSRLSALADCIKASSGRITLQGHADE---RGTEEYNLQLSNSRASAVK 206

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN-SANRRID 335
           + L   GV  +R++ + G+   R    ASD    + NRR++
Sbjct: 207 RYLTTLGVPANRLATV-GYGETRPLNSASDEEAWAQNRRVE 246


>gi|312195438|ref|YP_004015499.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
 gi|311226774|gb|ADP79629.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
          Length = 440

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
               +  +F   SS   P     +  +   +  ++  ++I G+TD+        DN  LS
Sbjct: 177 FRLPSDVLFAFGSSTLSPSAARAIDALAHQITATSGTVTIAGYTDSI---GTDADNQALS 233

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILVED 340
           L RA +  Q  + + +  D   K  GF        +       +P   + NRR+++ V+ 
Sbjct: 234 LARASAVRQA-IAATLGPDFTYKAVGFGETSPVAPNTHQDGSDNPDGRARNRRVELTVDA 292

Query: 341 RQG 343
             G
Sbjct: 293 ATG 295


>gi|262407869|ref|ZP_06084417.1| outer membrane protein [Bacteroides sp. 2_1_22]
 gi|294646781|ref|ZP_06724404.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|262354677|gb|EEZ03769.1| outer membrane protein [Bacteroides sp. 2_1_22]
 gi|292637941|gb|EFF56336.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
          Length = 255

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 83  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 131

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 132 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 191

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 192 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 238


>gi|242309709|ref|ZP_04808864.1| cadf [Helicobacter pullorum MIT 98-5489]
 gi|239523710|gb|EEQ63576.1| cadf [Helicobacter pullorum MIT 98-5489]
          Length = 308

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   PE    +Q   E +  + +   +I GHTD++        N +LS  RA S 
Sbjct: 204 FPSDSSSVNPEYYPEIQDFAEYMKQNPDKTATISGHTDST---GSEAYNQKLSERRAISV 260

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + ++K G+S DR+    G+   +    +       ANRR++
Sbjct: 261 KEEIVKQGISPDRLD-TKGYGEEKPIATNKTKEGRQANRRVE 301


>gi|85704529|ref|ZP_01035631.1| hypothetical protein ROS217_05604 [Roseovarius sp. 217]
 gi|85670937|gb|EAQ25796.1| hypothetical protein ROS217_05604 [Roseovarius sp. 217]
          Length = 321

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              I+ +     F  +S+     +  +L  + +++    +  I I GHTD+      A  
Sbjct: 207 RFDILSRTGNIYFKPASAQLDGASGPLLDAVAQIVTRCPDLTIQIAGHTDSF---GSAAA 263

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           N  LS  RA S    L    VS  R+  + G+   R     +++     NRRI+  + D
Sbjct: 264 NQTLSERRAQSVVDYLATRDVSPSRLIAL-GYGETRPVADNSTEQGRRENRRIEFSISD 321


>gi|34763583|ref|ZP_00144517.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886747|gb|EAA23886.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 157

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L+ I E +  +   I+I GHTD+    + A  N++
Sbjct: 28  TIVLDERSLHFDFDKSNVKPQYYDLLKNIQEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 85  LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142


>gi|288927544|ref|ZP_06421391.1| lipoprotein PG3 [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330378|gb|EFC68962.1| lipoprotein PG3 [Prevotella sp. oral taxon 317 str. F0108]
          Length = 225

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A+ +    + E T   G+    +   +  +F  + +     +   L K  +V
Sbjct: 70  MDKVAKRTAEQVKNAKVEEVTDANGLKAVKVTFDSGILFATNKATLNQSSKNELAKFSQV 129

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  + +  + I GHTD +    I   N  LS  RA S    L   GV   +  K+ G   
Sbjct: 130 LKENRDCHVDIYGHTDNTGNDGI---NIPLSNSRAQSVVNYLANCGVPRSQFQKVEGKGS 186

Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343
                ++   +    NRR+++ +   + 
Sbjct: 187 SDPVASNSTASGRQQNRRVEVYLYASKA 214


>gi|323700000|ref|ZP_08111912.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323459932|gb|EGB15797.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 192

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E+  +L  I E   + S+  +S+ GHTD        + N+ LS+ RA   
Sbjct: 91  FHSDSTRLTDESKALLPDILESWRSRSSRDVSVVGHTDTL---GEKQYNYDLSVRRAEKV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             +L+K G+ ED I +++        I +        NRR+++LV
Sbjct: 148 RDLLVKGGMPED-IIEMTSHGEENPLIPTPDGRSEPRNRRVEVLV 191


>gi|15611819|ref|NP_223470.1| flagellar motor protein MotB [Helicobacter pylori J99]
 gi|298736519|ref|YP_003729045.1| chemotaxis protein MotB [Helicobacter pylori B8]
 gi|12229872|sp|Q9ZL29|MOTB_HELPJ RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|4155316|gb|AAD06331.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylori J99]
 gi|298355709|emb|CBI66581.1| chemotaxis protein MotB [Helicobacter pylori B8]
          Length = 257

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|19703598|ref|NP_603160.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713702|gb|AAL94459.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 157

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L  I E +  +   I+I GHTD+    + A  N++
Sbjct: 28  TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           LS  RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 85  LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142


>gi|115523809|ref|YP_780720.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517756|gb|ABJ05740.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 446

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E++ VL+K+G +L       I + GHTD          N  LS  RA + 
Sbjct: 343 FQPRSAEISKESLPVLEKLGAILVQCPAVTIEVAGHTDG---GGKKAKNQALSERRAEAV 399

Query: 296 YQVLMKS--GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L K+  GV   +++ + G+   +   ++D     + NRRI+ +V+
Sbjct: 400 VASLTKAKIGVGSAKLTAV-GYGSAKPIASNDTPEGRANNRRIEFVVK 446


>gi|257125214|ref|YP_003163328.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049153|gb|ACV38337.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 173

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I+   N   FD +S+    E   VL+K+   +      ISI G+TD+   +     N  L
Sbjct: 63  IVLDANALKFDFNSATIKEEYTPVLEKLKNYIESKNHKISITGYTDS---KGTKEYNREL 119

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
           SL RA S  + L++ G++ ++I +  G        ++D     S NRRI+I
Sbjct: 120 SLRRAESVEEKLIELGLAPEKIIETKGNGDANPIASNDTEEGRSVNRRIEI 170


>gi|282877937|ref|ZP_06286746.1| OmpA family protein [Prevotella buccalis ATCC 35310]
 gi|281299938|gb|EFA92298.1| OmpA family protein [Prevotella buccalis ATCC 35310]
          Length = 227

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
             K++   +  V +  V+ V  +     + ++     +  +F  S +     +   L K 
Sbjct: 72  MDKVAQETAAQVENAKVEEVKDKNGLDAVKVTF---DSGILFASSKANLNQTSKNELAKF 128

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             VL ++ +  I + GHTD++    I   N  LS DRA S    L   GV   +   + G
Sbjct: 129 STVLKNNKDCHIDVYGHTDSTGNDGI---NIPLSNDRARSVVNYLKSCGVPSSQFQNVVG 185

Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338
               +    +        NRR+++ +
Sbjct: 186 QGSTQPVADNATKAGRQLNRRVEVFL 211


>gi|238757311|ref|ZP_04618497.1| Inner membrane lipoprotein yiaD [Yersinia aldovae ATCC 35236]
 gi|238704350|gb|EEP96881.1| Inner membrane lipoprotein yiaD [Yersinia aldovae ATCC 35236]
          Length = 226

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 90  VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 148

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA S    L+  GV+ +RI + SG       
Sbjct: 149 DKTAVNVTGYTDST---GARAHNMTLSQQRADSVGSTLIVQGVAANRI-RTSGAGPDNPV 204

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 205 ATNSTAAGKAQNRRVEITL 223


>gi|256419485|ref|YP_003120138.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256034393|gb|ACU57937.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 225

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   A++I +          V     E    GI ++     +  +F    S    +  
Sbjct: 74  KKMDKQAQEIKTE---------VPNATVERVGEGINVTF---ASGVLFGFDKSDLTGQAQ 121

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++ +  +L    +  + + GHTD +        N  LS  RA +    L   GV+  R
Sbjct: 122 QNIKDLATILNKYPDTYVRVEGHTDTT---GTDSYNMGLSERRANAVATYLKSQGVAASR 178

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           + +   +   +  + +  D   + NRR++  +
Sbjct: 179 V-QTFWYGARQPVVPNNSDANKAKNRRVEFSI 209


>gi|253990531|ref|YP_003041887.1| hypothetical protein PAU_03057 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638897|emb|CAR67512.1| similar to putative membrane protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781981|emb|CAQ85145.1| similar to putative membrane protein [Photorhabdus asymbiotica]
          Length = 583

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 14/191 (7%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             +EKG        L       E Y+   +     L + + +RL+    ++ + ++  VA
Sbjct: 368 AITEKGHRAQAVAVLRADDKLLEAYYRDGVPWRLGLGLYQGERLR---PRLQAAIASDVA 424

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVIS 267
           +   K  +         IS+    +  +FD   +      T V++  +  + A    +I+
Sbjct: 425 EPSEKKPVTTAVPQ--TISL---NSLALFDVGQAKLKVGSTKVLVNALINIRAKPGWLIA 479

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325
           I G+TD++     A  N  LSL RA +    L+++         + G    R     ++ 
Sbjct: 480 ITGYTDST---GDAAKNRALSLARAEAVRDWLLQTSDIPLACFAVQGEGATRPVATNSTA 536

Query: 326 PMNSANRRIDI 336
              +ANRR++I
Sbjct: 537 AGRAANRRVEI 547


>gi|332292401|ref|YP_004431010.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170487|gb|AEE19742.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 652

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD +     P+  + L KI  +L+      I I  HTDA   R     N  LS  RA S
Sbjct: 542 FFDLNKDYIRPDAAMELNKIVTLLSQQPSIEIRIESHTDA---RADDNYNMELSQRRAIS 598

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
               L++ G++++RI    GF   +L           +  +  NRR + ++E
Sbjct: 599 TKNYLIRQGIAKERILSAQGFGETQLLNDCSNGVQCDEVQHQINRRSEFIIE 650


>gi|330814653|ref|YP_004362828.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3]
 gi|327374645|gb|AEA65996.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3]
          Length = 421

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +  L   +   L   +A   V+ +      T      +  R   M+        P    V
Sbjct: 275 IDRLGAALGEQLRDEIAAGNVELIKDTAADT------VTLRFNGMYASGDVTVAPWWASV 328

Query: 252 LQKIGEVLAHST--EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +  +G  +A S     + I G+TD  P        N  LS  RA    Q+   +GV ++R
Sbjct: 329 MASVGRAIASSPATTHVLITGYTDNLPASPAHQGSNHALSTARAQQVAQIFAVAGVPKER 388

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           I  + G +       +      + NRR+++ V +
Sbjct: 389 I-SVVGQSDADPLADNVSKEGRARNRRVEVTVSN 421


>gi|325275242|ref|ZP_08141202.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324099634|gb|EGB97520.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 231

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+         L  I   L     +  +S+ GHTD+         N +LS  RA+S
Sbjct: 127 FEFDSARLTATDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 183

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
               L++SGV       + G    +     A+    + NRR +I ++ 
Sbjct: 184 VTDYLVQSGVPRSSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 231


>gi|295134535|ref|YP_003585211.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294982550|gb|ADF53015.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 232

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            R+   AKKI + + G            E    GI ++  D+ +   F         ++ 
Sbjct: 78  NRMDKQAKKIETEVPGA---------EVERVGEGINVT-FDENSGVYFATEKYNINAKSE 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  +     +  I + GHTD +        N  LS +RA +    L   G++  R
Sbjct: 128 ETLNKLANIFKEYPDTNILVEGHTDNT---GSESYNLTLSKNRAQAVTNFLTDHGIAASR 184

Query: 309 I-SKISGFAHHRLKIASDPMNSANRRIDILV 338
             +K  G A  +   ++    S NRR++I +
Sbjct: 185 FDTKWYGEAQPKYDNSTAEGRSKNRRVEIAI 215


>gi|224023377|ref|ZP_03641743.1| hypothetical protein BACCOPRO_00070 [Bacteroides coprophilus DSM
           18228]
 gi|224016599|gb|EEF74611.1| hypothetical protein BACCOPRO_00070 [Bacteroides coprophilus DSM
           18228]
          Length = 239

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           KS            +   +L  K+  +    A++I       V DN     +  T  +GI
Sbjct: 52  KSAAIGAAVGAAVGTGAGVLIGKKMDKAAQQAQQIEGAEVEQVTDNNGLQAVKVTFDSGI 111

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIAR 282
                      +F  SS+         L K    VL  + +  ++I G+TD   +RN  +
Sbjct: 112 -----------LFTTSSATLSSAAKASLSKFANNVLNQNRDMDVAIYGYTDNQGWRNSTK 160

Query: 283 D-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
           +     N  LS +RA S    L+  GVS  +I  + G          +++     NRR++
Sbjct: 161 EQSVQKNLNLSQERAQSVSSYLLGCGVSASQIKSVEGMGESNPVADNSTEAGRQENRRVE 220

Query: 336 I 336
           +
Sbjct: 221 V 221


>gi|159025750|emb|CAO02049.1| outer membrane protein A [Bordetella holmesii]
          Length = 177

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 70  FFDFDKSVLKPEGRQLLDQVAQQAKAIDLETIIAVGHTDS--IGTEAY-NLKLSDRRAAS 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +      +    + NRR++I +V  R+
Sbjct: 127 VKAYLVSKGIDPNRIY-TEGKGEAQPIATNKTAEGRARNRRVEIEIVGSRR 176


>gi|315224547|ref|ZP_07866374.1| OmpA family protein [Capnocytophaga ochracea F0287]
 gi|314945568|gb|EFS97590.1| OmpA family protein [Capnocytophaga ochracea F0287]
          Length = 230

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   AKKI   + G            +    GI+++  +      FD +      ++ 
Sbjct: 75  NQMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINNKSR 125

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  +L    +  + + GHTD          N  LS  RA +        G++  R
Sbjct: 126 QTLDKLSAILKEYPDTNVIVAGHTDNV---GKDEYNLGLSQRRAQAVTNYFKSKGLAGSR 182

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +    +       +++     + NRR+++++   +
Sbjct: 183 FT-TKWYGERNPVASNETADGRAKNRRVNVVIVPNE 217


>gi|326773949|ref|ZP_08233231.1| hypothetical protein HMPREF0059_02355 [Actinomyces viscosus C505]
 gi|326636088|gb|EGE36992.1| hypothetical protein HMPREF0059_02355 [Actinomyces viscosus C505]
          Length = 505

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+   P     L+ +   LA       ++I GHTD          N  LS  RA +
Sbjct: 216 FASDSADLAPGAEAQLKTVAGQLAQYPDGGTLTIVGHTDDVQ---DDAYNQTLSEKRANA 272

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
               L +    +   + +SG      K+    D   + NRR++I +    G
Sbjct: 273 VKTRLAQLTTLDKWQTSVSGKGESEPKVKDTSDEARAVNRRVEITLTPTGG 323


>gi|110639902|ref|YP_680112.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282583|gb|ABG60769.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 505

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 11/129 (8%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           + +      +G  I +       +F+++S   L  ++  L ++  V+      +I + GH
Sbjct: 382 RIIELSKLSSGTNILLH----NVLFERTSYELLSSSLPALDQLVTVMNQYPGMIIELSGH 437

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           TD       A+ N  LS +R  SA + L+  G+S DRI  + G+       ++D   +  
Sbjct: 438 TDNV---GSAKKNMELSKNRVESAKKYLVSKGISADRIKSV-GYGSKYPVASNDGEQTRK 493

Query: 331 -NRRIDILV 338
            NRR+++ +
Sbjct: 494 YNRRVELRI 502


>gi|149276390|ref|ZP_01882534.1| possible outer membrane protein [Pedobacter sp. BAL39]
 gi|149232910|gb|EDM38285.1| possible outer membrane protein [Pedobacter sp. BAL39]
          Length = 620

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            L   +  K  + E     + +          FD +    LPE++  L  +  +L  +  
Sbjct: 485 PLTTGSSSKPFVVEIYLQKLKVGTNMVLKNIFFDTNDFKLLPESVSELSTLLNLLKSNPN 544

Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           V + I+GHTD        + N +LSL+RA + Y+ L+ + +   R+ +  G+   +  +A
Sbjct: 545 VQMEIQGHTDNV---GNDQLNEQLSLNRAKAVYEYLLDNQIDPQRL-QYKGYGAKKPVVA 600

Query: 324 SDPMNSA--NRRIDILV 338
           +D  ++   NRR   ++
Sbjct: 601 NDTEDNRRLNRRTSFVI 617


>gi|310818068|ref|YP_003950426.1| chemotaxis MotB protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391140|gb|ADO68599.1| chemotaxis MotB protein [Stigmatella aurantiaca DW4/3-1]
          Length = 284

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRA 292
           F+   S   P    VL + G VLA      + +  HTD  P          +W LS  RA
Sbjct: 144 FEPGQSNLTPRGTEVLARAGAVLAAVEGHTVEVAAHTDELPVPAEAETEGTSWELSTARA 203

Query: 293 YSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +  + L +    ++++R+S  +G A  R  + SD       NRR+ +++  
Sbjct: 204 ATVVRALHEGPARLAQERLSA-TGHASFRPVVPSDSPVNRLRNRRVTLMLRP 254


>gi|328947766|ref|YP_004365103.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
 gi|328448090|gb|AEB13806.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
          Length = 490

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            +     +  +  V      TGI I++ + R    F   S   LP+    + +I E L  
Sbjct: 346 QIKKYFFERKIPDVDLNEVLTGIQITMQNLR----FIADSYELLPQEKPRIAQIAESLKK 401

Query: 262 ST----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +T      I I GHT      N       LS+ RA    + L+ +G+ ++ +    GF  
Sbjct: 402 ATSSGEYTILIEGHTADVNKPNGQMT---LSIQRAQEIIKELVSNGIDKN-LFTYRGFGG 457

Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341
            +    +      + NRR++I++  +
Sbjct: 458 TKPVADNSTPQGRALNRRVEIIIMPK 483


>gi|237747593|ref|ZP_04578073.1| outer membrane protein A [Oxalobacter formigenes OXCC13]
 gi|229378955|gb|EEO29046.1| outer membrane protein A [Oxalobacter formigenes OXCC13]
          Length = 207

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   SI  PE    L ++ + L+     + +  GHTD   +    + N +LS  RA +
Sbjct: 98  FFDFDKSIVKPEGKAKLDELIKALSGMDTEVIVAVGHTD---WIGTDKYNQKLSERRANA 154

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
               L+  GV  ++I    G    +   ++      + NRR+++ V   +G
Sbjct: 155 VKAYLVSKGVPANKIF-TEGKGKKQPIASNKTREGRAKNRRVEVEVVANRG 204


>gi|91776742|ref|YP_546498.1| OmpA/MotB [Methylobacillus flagellatus KT]
 gi|91710729|gb|ABE50657.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 1402

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF----R 278
           +L  +++      F+   +     ++  L+++   L       I I GHTD        R
Sbjct: 103 VLTRLVENSGAAQFESGKADLTDSSVAALEQLAAQLQGKKNVRIDIAGHTDNQRLSPNAR 162

Query: 279 NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            I RDN  LS  R+ +    L  K G+ + ++  ISG+   +   ++D     + NRR+ 
Sbjct: 163 KIFRDNQGLSEARSLAVAAFLKQKLGLEDSQL-SISGYGESQPVTSNDTPEGMAQNRRVI 221

Query: 336 ILV 338
           I V
Sbjct: 222 IRV 224


>gi|325106498|ref|YP_004276152.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324975346|gb|ADY54330.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 435

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 218 ETTRTGILIS-----IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           E  R  I+++     I+D+    + FD   +     +   L ++ ++L      + + GH
Sbjct: 310 EIVREKIVVTEADRKIVDEAIKNLEFDLGKATIRSTSYATLNRVAQLLVEKNFSLKLAGH 369

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           TD +        N RLS +RA S    L+  G +  RI   +G+   +   ++       
Sbjct: 370 TDNT---GSMELNMRLSKERAESVKAYLVSQGANASRIEA-TGYGPTQPIASNKTAEGRQ 425

Query: 330 ANRRIDILV 338
            NRR++  +
Sbjct: 426 KNRRVEFTL 434


>gi|110678313|ref|YP_681320.1| OmpA family domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109454429|gb|ABG30634.1| OmpA family domain protein [Roseobacter denitrificans OCh 114]
          Length = 221

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L  D     V    T   +++S+       +F   S    P+    L  +   
Sbjct: 82  LDQQEAELRRDLGNDDVQITNTGDRLIVSL---PQDLLFATDSFSVRPDLQNDLYTVAGS 138

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L +     I + GHTD+      A  N RLS  RA S   +LM +GV+  R+  I G   
Sbjct: 139 LQNYPASTIQVIGHTDSD---GDAAYNQRLSERRAGSVAGILMDAGVTPSRLQTI-GRGE 194

Query: 318 HRLKIA--SDPMNSANRRIDILVED 340
            +   +  ++   + NRR++I++  
Sbjct: 195 SQPVASNLNEAGKAQNRRVEIIILP 219


>gi|108563226|ref|YP_627542.1| flagellar motor protein MotB [Helicobacter pylori HPAG1]
 gi|107836999|gb|ABF84868.1| flagellar motor rotation protein [Helicobacter pylori HPAG1]
          Length = 257

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N     +      G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKAIIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKAIIARKGEGS 107


>gi|310781368|gb|ADP24154.1| outer membrane protein A [Bordetella avium]
 gi|310781370|gb|ADP24155.1| outer membrane protein A [Bordetella avium]
          Length = 198

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   VL ++ + +        I  GHTD+         N +LS  RA +
Sbjct: 92  FFDFDKSTIKPEGRQVLDQVADTVQSIDLETLIATGHTDSI---GAEAYNQKLSERRANA 148

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  GV  DRI    G    +   ++      + NRR++I +V  R+
Sbjct: 149 VKAYLVNKGVPADRIY-TEGKGEAQPVASNKTREGRAQNRRVEIEIVGSRK 198


>gi|228474126|ref|ZP_04058867.1| inner membrane lipoprotein YiaD [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274640|gb|EEK13481.1| inner membrane lipoprotein YiaD [Capnocytophaga gingivalis ATCC
           33624]
          Length = 231

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S    E   +   +           ++   AKKI   + G            +    GI+
Sbjct: 54  SGGNSELGAVIGTAVGGAAGAVIGNQMDRQAKKIEEEIPGA---------EVKRVDDGIV 104

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           ++  D+++   F+ + +    E   +L K+  VL    +  + + GHTD+   +     N
Sbjct: 105 VT-FDEKSGVTFEFNKADLTSEAKTLLTKMAGVLKEYPDTNVIVAGHTDS---KGKPAYN 160

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             LS  RA +       SG+   R +    F   +     +++   + NRR++I +   +
Sbjct: 161 MGLSERRAKAVTNFFTASGLKASRFT-TKWFGATQPAYDNSTEEGRAKNRRVNIAIVPNE 219


>gi|124004962|ref|ZP_01689805.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123989640|gb|EAY29186.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 645

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F +  +  +P+    L K+  +LA   +  + I GHTD+      +  N +LS +RA + 
Sbjct: 539 FKEGKADVIPDMEADLDKLVILLADHPKLGLKISGHTDS---SGDSDANLKLSQNRADAI 595

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKI---ASDPMNSANRRID---ILVE 339
            + ++  G     R++ I G+      I    +D     NRR++   I +E
Sbjct: 596 KKYIVDKGKFDPKRVTAI-GYGDTVPIIKSEKTDEDKKINRRVEFEIITIE 645


>gi|94500908|ref|ZP_01307434.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65]
 gi|94427027|gb|EAT12009.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65]
          Length = 2033

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF----RNIA 281
            +      P F   S       I  ++ + E L    +  I + GHTD  P     R+I 
Sbjct: 832 EVHKPEEAPKFSSFSRDLSQADINAMKSVLEQLRGLEDLRIEVAGHTDNVPIAKRSRHIF 891

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-L 337
            +N+ LSL RA SA   LM+   +  ++++ ISG+   R      ++   + NRR+++ +
Sbjct: 892 NNNYELSLARARSAADYLMRELELGPEQVT-ISGYGSQRPVTNNGNEQSRALNRRVEVNI 950

Query: 338 VEDRQG 343
           +  R G
Sbjct: 951 LAARDG 956


>gi|206580585|ref|YP_002236817.1| OmpA domain protein [Klebsiella pneumoniae 342]
 gi|206569643|gb|ACI11419.1| OmpA domain protein [Klebsiella pneumoniae 342]
          Length = 567

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             + +  +   +  +FD   +      T V++  +  + A    +I + G+TD +     
Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476

Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + N +LSL RA +    +L  S +       + G         +D     +ANRR++I 
Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 535

Query: 338 VEDR 341
           +  R
Sbjct: 536 LVPR 539


>gi|83945760|ref|ZP_00958104.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850850|gb|EAP88711.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 217

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        VL  + +VL       + + GH D+      A  N  LS  RA S 
Sbjct: 112 FATNSAQIDQRFGPVLNDVADVLMTYPATYVDVIGHADSV---GDASYNQTLSERRASSV 168

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV  DR+  ++G    +   ++D     +ANRR++I +
Sbjct: 169 AAELIARGVMRDRLY-VAGMGESQPIASNDTDSGRAANRRVEIKI 212


>gi|322830754|ref|YP_004210781.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321165955|gb|ADW71654.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 220

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDTNSSTLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R +   N +LS  RA      L+  GV   R+   +G       
Sbjct: 142 PKTAVNVIGYTDSTGTRAL---NMKLSQQRADGVGSALITQGVEGSRVH-TTGAGPDNPI 197

Query: 322 --IASDPMNSANRRIDILVEDRQ 342
              +++   + NRR++I +   Q
Sbjct: 198 AGNSTEAGKAQNRRVEITLSPLQ 220


>gi|237721048|ref|ZP_04551529.1| outer membrane protein [Bacteroides sp. 2_2_4]
 gi|293372983|ref|ZP_06619352.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|229449883|gb|EEO55674.1| outer membrane protein [Bacteroides sp. 2_2_4]
 gi|292632051|gb|EFF50660.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|295084441|emb|CBK65964.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Bacteroides xylanisolvens XB1A]
          Length = 238

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 66  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221


>gi|110638537|ref|YP_678746.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281218|gb|ABG59404.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 510

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
            K    E TR   L+ I   ++  +    F+ S    LPE+   L K+ ++L  + +  I
Sbjct: 378 SKNEYIEITRDYYLVPIEVGQSIKLNHIYFETSKYDLLPESYYELDKVVKLLRENPKMKI 437

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            I GHTD       A  N  LS +RA S    ++  G++ DRI+   GF   +  + +D 
Sbjct: 438 EIEGHTDNQ---GNADKNMILSQNRAKSVMDYIISKGITADRITS-KGFGITKPMVDNDT 493

Query: 327 --MNSANRRIDILVEDR 341
                 NRR++  +  +
Sbjct: 494 PENRQLNRRVEFTILQK 510


>gi|209809526|ref|YP_002265064.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
 gi|208011088|emb|CAQ81507.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
          Length = 222

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 14/209 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  +++  G+    S              +   + +     ++   +   A       
Sbjct: 18  QATQRQNATTGETETNSATKGALAGILAGVAVGLATGDNAKERRKNALIGAAAGGAVGGG 77

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256
            G   D+  + +  E   +G+ +  +      +       F  SS          L  + 
Sbjct: 78  VGYYFDSQEQALRDELKSSGVQVERVGDNELKLIMDNGVGFQSSSYQLDASIYNTLNGVA 137

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L    +  + I GHTD+         N  LS  RA S    L+K  V+  R++   G+
Sbjct: 138 RILVEYPDTALQIDGHTDS---SGNDTKNQTLSEQRAESVRTYLIKQKVAAGRVNA-RGY 193

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   +      + NRR++I +   +
Sbjct: 194 GERYPVFDNSTSQGRACNRRVEITILPLK 222


>gi|170025766|ref|YP_001722271.1| hypothetical protein YPK_3551 [Yersinia pseudotuberculosis YPIII]
 gi|169752300|gb|ACA69818.1| type IV / VI secretion system protein, DotU family [Yersinia
           pseudotuberculosis YPIII]
          Length = 536

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506


>gi|91201036|emb|CAJ74094.1| hypothetical protein kuste3333 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 395

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 220 TRTGILISIIDQRN-----TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           T  G   +I+D R         F+        E    L  I +VL  + +  I I GHTD
Sbjct: 274 TPEG---AIVDSRGCWVVKGIAFEYKKWDIKEEFESNLTNIVDVLEKNPDLQIRIEGHTD 330

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331
                ++   N  LS  RA +    L++ G+ E RI   +GF        +  +   + N
Sbjct: 331 N--IGSMKY-NIDLSQKRALAVKDYLVEKGIHESRI-STTGFGFKHPIAPNVTEEGRALN 386

Query: 332 RRIDIL 337
           RR +I+
Sbjct: 387 RRAEIV 392


>gi|194434867|ref|ZP_03067114.1| OmpA domain protein [Shigella dysenteriae 1012]
 gi|194416886|gb|EDX33008.1| OmpA domain protein [Shigella dysenteriae 1012]
 gi|332089116|gb|EGI94226.1| ompA family protein [Shigella dysenteriae 155-74]
          Length = 550

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255
           + I   +   + D        E T + +    +   +  +FD   +      T V++  +
Sbjct: 399 EHIRQPVLRAIHDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314
             + A    +I + G+TDA+      + N +LSL RA +    +L  S +       + G
Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513

Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341
               +    +D     + NRR+ I +  R
Sbjct: 514 LGESQPAATNDTPQGRAVNRRVKISLVPR 542


>gi|217034137|ref|ZP_03439557.1| hypothetical protein HP9810_868g30 [Helicobacter pylori 98-10]
 gi|216943421|gb|EEC22877.1| hypothetical protein HP9810_868g30 [Helicobacter pylori 98-10]
          Length = 255

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|257459102|ref|ZP_05624221.1| outer membrane fibronectin-binding protein [Campylobacter gracilis
           RM3268]
 gi|257443487|gb|EEV18611.1| outer membrane fibronectin-binding protein [Campylobacter gracilis
           RM3268]
          Length = 340

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   PE +  ++ + +VL AH    + + GHTD++        N +LS  RA + 
Sbjct: 238 FATDSSKISPEFMNQIKNVSDVLVAHPDYKVILEGHTDST---GSNAYNQKLSERRAAAV 294

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
              L   GV   RI+ + G+   +     A+    + NRR+D
Sbjct: 295 GGALKSFGVDASRITTV-GYGETKPIATNATKAGRAQNRRVD 335


>gi|145600375|ref|YP_001164451.1| OmpA-family membrane protein [Yersinia pestis Pestoides F]
 gi|145212071|gb|ABP41478.1| OmpA-family membrane protein [Yersinia pestis Pestoides F]
          Length = 529

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 355 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 411

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 412 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 471

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 472 AIGRGESDPLADNATEEGRKRNRRVDIL 499


>gi|108809572|ref|YP_653488.1| hypothetical protein YPA_3581 [Yersinia pestis Antiqua]
 gi|108810554|ref|YP_646321.1| OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|150260448|ref|ZP_01917176.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125]
 gi|165928091|ref|ZP_02223923.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937799|ref|ZP_02226360.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008916|ref|ZP_02229814.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211978|ref|ZP_02238013.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401306|ref|ZP_02306806.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421902|ref|ZP_02313655.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426473|ref|ZP_02318226.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467268|ref|ZP_02331972.1| hypothetical protein YpesF_05092 [Yersinia pestis FV-1]
 gi|218927713|ref|YP_002345588.1| hypothetical protein YPO0514 [Yersinia pestis CO92]
 gi|229836901|ref|ZP_04457066.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A]
 gi|229840403|ref|ZP_04460562.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842483|ref|ZP_04462638.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900741|ref|ZP_04515865.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|270487887|ref|ZP_06204961.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294502609|ref|YP_003566671.1| hypothetical protein YPZ3_0499 [Yersinia pestis Z176003]
 gi|108774202|gb|ABG16721.1| OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|108781485|gb|ABG15543.1| putative OmpA-family membrane protein [Yersinia pestis Antiqua]
 gi|115346324|emb|CAL19195.1| putative OmpA-family membrane protein [Yersinia pestis CO92]
 gi|149289856|gb|EDM39933.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125]
 gi|165914211|gb|EDR32827.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919952|gb|EDR37253.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992255|gb|EDR44556.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206724|gb|EDR51204.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960039|gb|EDR56060.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049331|gb|EDR60739.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054571|gb|EDR64379.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229682080|gb|EEO78172.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|229690793|gb|EEO82847.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696769|gb|EEO86816.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705844|gb|EEO91853.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A]
 gi|262360640|gb|ACY57361.1| hypothetical protein YPD4_0452 [Yersinia pestis D106004]
 gi|270336391|gb|EFA47168.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294353068|gb|ADE63409.1| hypothetical protein YPZ3_0499 [Yersinia pestis Z176003]
          Length = 536

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506


>gi|194291785|ref|YP_002007692.1| outer membrane protein; ompa/motb domain [Cupriavidus taiwanensis
           LMG 19424]
 gi|193225689|emb|CAQ71635.1| putative outer membrane protein; OmpA/MotB domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 272

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  ++   P+   +L ++  VL   +   I I GHTD          N  LS  RA + 
Sbjct: 170 FETGAATLTPKGRAILDEMAAVLPRLSGRKIEIVGHTDN---SGSRALNLTLSQARAETV 226

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
              L+  G     ++ + G    +    +D     + NRRI+
Sbjct: 227 KNYLIGKGGEPGMLTAV-GVGPDQPVAPNDKEEGRAKNRRIE 267


>gi|322834544|ref|YP_004214571.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321169745|gb|ADW75444.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 165

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
               +F  + +    E+   ++K+   L H     +++ GHTD   + +   +N  LSL 
Sbjct: 58  DAKVLFGNNQATLSTESKQSVEKLASELLHVGLNKVNLDGHTDN--YGDAGYNN-DLSLR 114

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           RA +       +G+    I    G    +   ++      + NRR+ +++
Sbjct: 115 RANTVAAAFADAGMPRANIH-TRGLGQSQPVASNKTQAGRAQNRRVSVII 163


>gi|146305280|ref|YP_001185745.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145573481|gb|ABP83013.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 317

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    ++   L +I ++L A +   + + GHTDA         N  LS  RA S 
Sbjct: 213 FDTDKADMRADSQPQLAEIAKLLQASAQLQVLVVGHTDAQ---GALDYNRDLSQRRAQSI 269

Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
            + L+   G++  R+S +  G A        +   + NRR++++
Sbjct: 270 VEALVSQHGIARQRLSAVGVGMAAPVASNRDEAGRALNRRVELV 313


>gi|209695291|ref|YP_002263220.1| outer membrane protein A [Aliivibrio salmonicida LFI1238]
 gi|208009243|emb|CAQ79504.1| outer membrane protein A [Aliivibrio salmonicida LFI1238]
          Length = 367

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
           +++ +     +F   S+    E       I E L ++    +SI GHTD+       + N
Sbjct: 247 LTLNELNGQALFGFDSAKLSSEVEAHFDSILERLKNNPTSELSIVGHTDSQ---GSDKYN 303

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             LSL RA S       +G++  RI K+ G         ++     S NRR+D++
Sbjct: 304 EGLSLRRAQSVANYFESNGIAMSRI-KVEGRGETDPVADNNTLKGRSMNRRVDLI 357


>gi|257470361|ref|ZP_05634452.1| Outer membrane porin F [Fusobacterium ulcerans ATCC 49185]
 gi|317064570|ref|ZP_07929055.1| outer membrane porin F [Fusobacterium ulcerans ATCC 49185]
 gi|313690246|gb|EFS27081.1| outer membrane porin F [Fusobacterium ulcerans ATCC 49185]
          Length = 186

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 11/166 (6%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           KE ++     + + +       TL  ++  N  KGV        +++S+       +FD 
Sbjct: 28  KELVIEETENQFVMEDIDVSKKTLEEIIVFN-EKGVTIRREGNNLVLSM---PELVLFDF 83

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           +      +    L  + + L  + +  I I G+TD   F      N  LS+ RA +    
Sbjct: 84  NKYEVKNKIKGSLNALAKALEENPDIRIKIDGYTD---FIGSEGYNLELSVKRADAIKDY 140

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           L   GV    I  I G+       ++  +   + NRR++ ++   +
Sbjct: 141 LTNKGVKASNI-SIEGYGKQNPIASNQTETGRAKNRRVEFIISRDK 185


>gi|332284746|ref|YP_004416657.1| outer membrane protein A precursor [Pusillimonas sp. T7-7]
 gi|330428699|gb|AEC20033.1| outer membrane protein A precursor [Pusillimonas sp. T7-7]
          Length = 192

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   VL ++            I  GHTD+         N  LS  RA S
Sbjct: 86  FFDFDKSTLKPEGRQVLDQVASQADTINLETLIATGHTDS--IGTEQY-NQGLSQRRANS 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  GV+ DRI  + G        ++      + NRR++I +V  R+
Sbjct: 143 VKDYLVSKGVAADRIY-VEGKGETSPVASNSTREGRAQNRRVEIEIVGTRK 192


>gi|169634041|ref|YP_001707777.1| putative outer membrane protein [Acinetobacter baumannii SDF]
 gi|169152833|emb|CAP01862.1| putative outer membrane protein [Acinetobacter baumannii]
          Length = 217

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GV   RI 
Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGVPSSRID 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +   +    NRR++I +  +Q
Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217


>gi|42524180|ref|NP_969560.1| putative outer membrane protein [Bdellovibrio bacteriovorus HD100]
 gi|39576388|emb|CAE80553.1| putative outer membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 214

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266
              + K    + T  G+   I   ++  +FD   +   P     + ++  ++      ++
Sbjct: 78  QKELAKIAETKRTEQGL---ITKLKSDILFDTGKADLKPAAQTNINQLAAIMKKYPENIL 134

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324
           +++G+TD +  + +      LS  RA +    L+ +GV    ++ I G           +
Sbjct: 135 TVKGYTDDTGSQMVNNP---LSEQRAKAVSAQLVAAGVPAQTVTSI-GMGALNPVDPAKT 190

Query: 325 DPMNSANRRIDILV 338
               + NRR++I +
Sbjct: 191 KEARAKNRRVEIEI 204


>gi|51595006|ref|YP_069197.1| hypothetical protein YPTB0655 [Yersinia pseudotuberculosis IP
           32953]
 gi|153950101|ref|YP_001402377.1| hypothetical protein YpsIP31758_3422 [Yersinia pseudotuberculosis
           IP 31758]
 gi|186894007|ref|YP_001871119.1| hypothetical protein YPTS_0678 [Yersinia pseudotuberculosis PB1/+]
 gi|51588288|emb|CAH19895.1| putative OmpA-family membrane protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|152961596|gb|ABS49057.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|186697033|gb|ACC87662.1| type IV / VI secretion system protein, DotU family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 536

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506


>gi|162418688|ref|YP_001607328.1| hypothetical protein YpAngola_A2952 [Yersinia pestis Angola]
 gi|162351503|gb|ABX85451.1| OmpA domain protein [Yersinia pestis Angola]
          Length = 535

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 361 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 417

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 418 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 477

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 478 AIGRGESDPLADNATEEGRKRNRRVDIL 505


>gi|330009105|ref|ZP_08306392.1| OmpA family protein [Klebsiella sp. MS 92-3]
 gi|328534943|gb|EGF61477.1| OmpA family protein [Klebsiella sp. MS 92-3]
          Length = 567

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             + +  +   +  +FD   +      T V++  +  + A    +I + G+TD +     
Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476

Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + N +LSL RA +    +L  S +       + G         +D     +ANRR++I 
Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 535

Query: 338 VEDR 341
           +  R
Sbjct: 536 LVPR 539


>gi|329945590|ref|ZP_08293324.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528682|gb|EGF55644.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 321

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 22/240 (9%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP- 176
           T++      +    F     Q++    +  T   +K  D+      +       N  +P 
Sbjct: 56  TDRYTGADGVRLVDFDAGTVQETFKASSESTLLMDKEPDVTLHALFKPVDASTINVLVPE 115

Query: 177 -------PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL----FETTRTGIL 225
                  P+ ++  L+   KK L+D+     ST   +  +     V        T   + 
Sbjct: 116 SGLFEGVPVVRDGKLSEDAKKALEDVY-DTESTPDPVALETFTASVDGASDTRVTGKSVT 174

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           I++       +FD  S+    +    L+K  + L+      ++I GHTD          N
Sbjct: 175 ITLASD---VLFDSDSADLSAQADTTLKKAADQLSTYPGGQVTIVGHTDDVA---DDAHN 228

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
             LS  RA +    L +          +SG      ++ +D       NRR++I +   Q
Sbjct: 229 QDLSQRRAQAVSDRLGQLASMSAYSVSVSGKGESEPRVPNDSDENRQLNRRVEITLVPTQ 288


>gi|157889001|dbj|BAF80950.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%)

Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K         K++++   AK+I  +        ++  +  E T        I       F
Sbjct: 175 KAPKTPQTTTKQIEEKPQAKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D+ S    PE    +Q++G+VL  + +  +I  GHTD++        N +LSL+RA +  
Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKVYNQKLSLERAKAVA 281

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           + L KSGV++++I    G+   + K ++D     + NRR++
Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|148546401|ref|YP_001266503.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148510459|gb|ABQ77319.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 239

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I++ D     MF   S+         LQ +   L   T   + + GHTD          
Sbjct: 127 VITL-DDNGAVMFAFDSAELTLAAQQRLQGLVAKLNSPTVTKVRVIGHTDGV---GSDSY 182

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           N  LS  RA S  + L+  G+   +++   G         ++     + NRR+++ +
Sbjct: 183 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238


>gi|158522006|ref|YP_001529876.1| OmpA/MotB domain-containing protein [Desulfococcus oleovorans Hxd3]
 gi|158510832|gb|ABW67799.1| OmpA/MotB domain protein [Desulfococcus oleovorans Hxd3]
          Length = 388

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+++ +  + ++   L ++  VL ++ E  + ++GHTD+   R     N  LS  RA + 
Sbjct: 286 FERARADIMADSFAKLDEVVTVLKNNPELRLEVQGHTDS---RGNPGFNQVLSEQRAGAV 342

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            +  +  G++ DR+    GF   +    +D     + NRR+++
Sbjct: 343 VRYFVSRGIAADRLVS-KGFGPSQPIADNDTAEGRAENRRVEL 384


>gi|115374815|ref|ZP_01462090.1| flagellar motor protein MotB [Stigmatella aurantiaca DW4/3-1]
 gi|115368211|gb|EAU67171.1| flagellar motor protein MotB [Stigmatella aurantiaca DW4/3-1]
          Length = 261

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRA 292
           F+   S   P    VL + G VLA      + +  HTD  P          +W LS  RA
Sbjct: 121 FEPGQSNLTPRGTEVLARAGAVLAAVEGHTVEVAAHTDELPVPAEAETEGTSWELSTARA 180

Query: 293 YSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +  + L +    ++++R+S  +G A  R  + SD       NRR+ +++  
Sbjct: 181 ATVVRALHEGPARLAQERLSA-TGHASFRPVVPSDSPVNRLRNRRVTLMLRP 231


>gi|308062136|gb|ADO04024.1| flagellar motor protein MotB [Helicobacter pylori Cuz20]
 gi|308063396|gb|ADO05283.1| flagellar motor protein MotB [Helicobacter pylori Sat464]
          Length = 255

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|213156444|ref|YP_002318864.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057]
 gi|213055604|gb|ACJ40506.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057]
          Length = 255

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S++       +L ++   L     E + I GHTD+      A  N +LS DRA + 
Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGREKVKIVGHTDS---SGDATKNLKLSQDRALAV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
              L+   +  D +    G    +    +        NRRI+  V 
Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255


>gi|270264140|ref|ZP_06192407.1| hypothetical protein SOD_g00710 [Serratia odorifera 4Rx13]
 gi|270041789|gb|EFA14886.1| hypothetical protein SOD_g00710 [Serratia odorifera 4Rx13]
          Length = 219

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + +KG     TR G  I +    N   FD SS+   P     L  +  VL   
Sbjct: 82  VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 140

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD+         N  LS  RA      L+  GV+ +RI + SG       
Sbjct: 141 PKTAVNVIGYTDS---SGSRALNMTLSQQRADGVGSALITQGVAANRI-RTSGAGPDNPI 196

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 197 ASNSTAEGKAQNRRVEITLSPLQ 219


>gi|70729258|ref|YP_258995.1| outer membrane protein OprF [Pseudomonas fluorescens Pf-5]
 gi|68343557|gb|AAY91163.1| outer membrane protein OprF [Pseudomonas fluorescens Pf-5]
 gi|154759407|gb|ABS85198.1| major outer membrane porin [Pseudomonas fluorescens]
          Length = 325

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            QVL+ + GV  +R+  + G+   R     A++   + NRR++  VE
Sbjct: 276 KQVLVNQYGVGANRVQSV-GYGESRPVADNATEAGRAVNRRVEASVE 321


>gi|238798361|ref|ZP_04641844.1| Inner membrane lipoprotein yiaD [Yersinia mollaretii ATCC 43969]
 gi|238717819|gb|EEQ09652.1| Inner membrane lipoprotein yiaD [Yersinia mollaretii ATCC 43969]
          Length = 219

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G TD+         N  LS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 DKTAVNVTGFTDS---SGARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|293608672|ref|ZP_06690975.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829245|gb|EFF87607.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 473

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    +   +L +   +L   +   +++ GHTD++     A  N  LS  RA + 
Sbjct: 371 FASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDST---GNAAANKALSQRRAQAV 427

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L+  GV   ++    G    +    +        NRRI+  V
Sbjct: 428 VDYLISKGVDGTKLVA-QGHGSDQPVAENTTEEGRFKNRRIEFSV 471


>gi|237742042|ref|ZP_04572523.1| outer membrane porin F [Fusobacterium sp. 4_1_13]
 gi|229429690|gb|EEO39902.1| outer membrane porin F [Fusobacterium sp. 4_1_13]
          Length = 348

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      + GHTD+       + N  
Sbjct: 237 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 293

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS +RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 294 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTPEGKQKNRRVEIVI 345


>gi|197116705|ref|YP_002137132.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
 gi|197086065|gb|ACH37336.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
          Length = 169

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +  I  ++       + + GHTD          N +LS DRA + 
Sbjct: 65  FKTGKAEIDPSCDKTMTAIAAIMTDYPGFHVQVDGHTDNV---GKPEANQKLSQDRADAV 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            + L+     + +     GF   +    +      + NRR+D  V
Sbjct: 122 VKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNRRVDFTV 166


>gi|197117764|ref|YP_002138191.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
 gi|197087124|gb|ACH38395.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
          Length = 468

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +I  PE    + ++G  +         I GHTD          N  LS  RA + 
Sbjct: 237 FDIDKAIIRPEYKEEIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNQDLSQRRAEAV 293

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L++  G+   R+S   G+   R     A+D     NRRI+ +++
Sbjct: 294 VNYLVEQYGIERSRLSA-KGYGFTRPIADNATDEGKQKNRRIEAIID 339



 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +    + K+ + +   +T    I GHTD +        N +LS  RA + 
Sbjct: 361 FDAGKADVKSQYRNEIAKVADYMKRYNTTTAVIEGHTDNT---GSPEKNMKLSQQRAQNV 417

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339
              L+ + G+   R+S     A  R+   + P     NRRI+ +++
Sbjct: 418 VNYLVDNFGIERSRLSAKGYGATRRISYNNTPEGRQKNRRINAVID 463


>gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinobacterium sp. Marseille]
 gi|151281809|gb|ABR90219.1| OmpA family protein [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++++  + +     G          + +T+   + + I    +   F    S   P    
Sbjct: 73  KMENQKRAMEQATQGTGVQ------VSQTSDNRLKLEI---PSDISFATGRSDINPSLQP 123

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L +    L  +    ++I GHTD++    I      LS DRA      L   GV+  RI
Sbjct: 124 ILDRFATGLVDNPTATVTIIGHTDSTGSDAINNP---LSFDRASRTRDYLTGRGVAPQRI 180

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILV 338
             + G   H      A     + NRR++I V
Sbjct: 181 Y-VDGRGSHEPIASNADAAGRARNRRVEIFV 210


>gi|15645435|ref|NP_207609.1| flagellar motor protein MotB [Helicobacter pylori 26695]
 gi|3024164|sp|P56427|MOTB_HELPY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein
           MotB
 gi|2313948|gb|AAD07865.1| flagellar motor rotation protein (motB) [Helicobacter pylori 26695]
          Length = 257

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|157889011|dbj|BAF80958.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%)

Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K         K++++    K+I  +        ++  +  E T        I       F
Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D++S    PE    +Q++G+VL  + +  +I  GHTD++        N +LSL+RA +  
Sbjct: 227 DQTS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           + L KSGV++++I    G+   + K ++D     + NRR++
Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|167035288|ref|YP_001670519.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861776|gb|ABZ00184.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 230

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+         L  I   L     +  +S+ GHTD+         N +LS  RA+S
Sbjct: 126 FEFDSARLTSSDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
               L++SGV       + G    +     A+    + NRR +I ++ 
Sbjct: 183 VTDYLVESGVPRRSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 230


>gi|254254565|ref|ZP_04947882.1| OmpA domain protein [Burkholderia dolosa AUO158]
 gi|124899210|gb|EAY71053.1| OmpA domain protein [Burkholderia dolosa AUO158]
          Length = 226

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  ++     +F   ++   P     L K+       T   ++I G+TD+         N
Sbjct: 113 VEHVNLAGDALFATGAATLTPAARASLDKLLSARDDRTYSNVTITGYTDSV---GSDASN 169

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L   G+   R   ++G        ++      ++NRR++I ++ 
Sbjct: 170 VALSKRRAQAVAAYLNAHGLK-TRTLTVTGRGSADPVASNATADGRASNRRVEISLQR 226


>gi|256840118|ref|ZP_05545627.1| outer membrane protein [Parabacteroides sp. D13]
 gi|256739048|gb|EEU52373.1| outer membrane protein [Parabacteroides sp. D13]
          Length = 226

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +TL        V           + ++     +  +F  +SS     + 
Sbjct: 72  KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 122

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+     L  + +  I I G TD +        N  LS  RA S Y  LM  GVS DR
Sbjct: 123 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 179

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +    G   H    ++D     S NRR++I++   Q
Sbjct: 180 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 214


>gi|298368928|ref|ZP_06980246.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282931|gb|EFI24418.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 216

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            +  E      +++ ++ S  +       P++                A   +S+ +   
Sbjct: 15  QKPDEPAAQQQQASPVQASTTETPQTQPEPVAPSAPAHATTPAPASAPATAQNSSAAAQG 74

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266
           +    +      T TG  I I    +  +FD   +   PE    LQK  +++      +I
Sbjct: 75  SSLTAQSSSLSGTETGFNIQIN-LSSDVLFDFDKAELKPEADRELQKAADIIRQKGKGLI 133

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-- 324
            I G+TD+   +     N RLSL RA +        G+ ++   +  G         +  
Sbjct: 134 LISGYTDS---KGTDAYNKRLSLVRAQAVKNWFEAQGLHQN--YQTEGLGAANPVAPNTN 188

Query: 325 -----DPM-NSANRRIDILV 338
                +P   + NRR++I+V
Sbjct: 189 DDGSDNPEGRAKNRRVEIIV 208


>gi|307547058|ref|YP_003899537.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581]
 gi|307219082|emb|CBV44352.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581]
          Length = 223

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++G      R G  I +    +   F   SS   P     L  +  VL   T+  I+I G
Sbjct: 93  MQGTGIGVERQGNDIVLN-MPSEVTFGFDSSDLTPAATSALNDVSNVLTQYTDTRINIAG 151

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           HTD++     A  N RLS  RA +  Q L +SGVS  R++   G+  ++   ++D     
Sbjct: 152 HTDST---GDAGYNQRLSERRAQAVGQYLSQSGVSAGRLNM-QGYGENQPVASNDTEAGR 207

Query: 329 SANRRIDILVED 340
           + NRR+++ +  
Sbjct: 208 AQNRRVEMTLTP 219


>gi|290955106|ref|YP_003486288.1| lipoprotein [Streptomyces scabiei 87.22]
 gi|260644632|emb|CBG67717.1| putative lipoprotein [Streptomyces scabiei 87.22]
          Length = 393

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +   P     L+ + + L    +  V++I GHT            + LS  RA +
Sbjct: 277 FTADDARLAPGADRYLRPVADSLERCGTDVVVTITGHTARV---GAGASGFALSGRRARA 333

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-------NSANRRIDILVEDRQG 343
             + L++ GVS   I  + G    R ++ + P           NRR++I V  ++G
Sbjct: 334 VSERLVRLGVSPALIGSVEGVGSTRPRVDNMPGGVFAERLARQNRRVEITVTPKEG 389


>gi|148259686|ref|YP_001233813.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146401367|gb|ABQ29894.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 227

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHS 262
            +    + T  G  + +    +  +         F   S+   P    +L ++G+ L  +
Sbjct: 85  AQKQALQRTAQGTGVQVSQTADNRLKLNVPADAGFATGSATLNPRLYPILDQLGQGLQQN 144

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             E + I G+TD++    I      LS +RA S    L+  G+S  RI    G       
Sbjct: 145 PTETVQIIGYTDSTGSNAINYP---LSDNRAASVKTYLVSRGISGQRI-ATRGMGPQDPV 200

Query: 322 --IASDPMNSANRRIDILV 338
              A+    +ANRR+DI V
Sbjct: 201 ASNATAAGRAANRRVDIYV 219


>gi|110640101|ref|YP_680311.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282782|gb|ABG60968.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 670

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            I   +L     +G  + +        F +S+   +  +   L ++ EVL  +    I +
Sbjct: 546 EIKVDLLLVPIESGQKVEL----KNVFFHQSTPNLIETSYPELDRMVEVLKTNPTVRIEL 601

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD       A  N  LS  R  +    L+  G+   RI+    F   +    ++   
Sbjct: 602 DGHTDNQ---GDAALNLALSEKRVETVKAYLVSKGIDNKRIT-TRAFGGTKPIAPNNTEE 657

Query: 327 MNSANRRIDILVE 339
               NRR++I++ 
Sbjct: 658 NRKKNRRVEIIIL 670


>gi|22127533|ref|NP_670956.1| hypothetical protein y3659 [Yersinia pestis KIM 10]
 gi|45443397|ref|NP_994936.1| hypothetical protein YP_3665 [Yersinia pestis biovar Microtus str.
           91001]
 gi|21960635|gb|AAM87207.1|AE013969_3 hypothetical [Yersinia pestis KIM 10]
 gi|45438266|gb|AAS63813.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 545

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255
           I  TL   +++ + +G +       G  + I        F    +    E      ++++
Sbjct: 371 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 427

Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311
           G  LA     I + GHTD  PFR+    +N +LS  RA      L   + ++E   R   
Sbjct: 428 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 487

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337
             G          A++     NRR+DIL
Sbjct: 488 AIGRGESDPLADNATEEGRKRNRRVDIL 515


>gi|163732607|ref|ZP_02140052.1| OmpA family domain protein [Roseobacter litoralis Och 149]
 gi|161393967|gb|EDQ18291.1| OmpA family domain protein [Roseobacter litoralis Och 149]
          Length = 319

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S   P     L+++ E L+ +    I++ GHTD +        N  LS  RA S 
Sbjct: 214 FAIGTSDLGPGPFPALKELSEFLSTTEGIRIALVGHTDTT---GALATNISLSRARAQSV 270

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
              L++  GV+ D++    G  +      +  D     NRR+++++ + Q
Sbjct: 271 RARLIEVYGVAPDKVDA-EGMGYLAPIATNLTDEGRRQNRRVEVVLLNTQ 319


>gi|317012627|gb|ADU83235.1| flagellar motor protein MotB [Helicobacter pylori Lithuania75]
          Length = 257

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|237716264|ref|ZP_04546745.1| outer membrane protein [Bacteroides sp. D1]
 gi|294807688|ref|ZP_06766481.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443911|gb|EEO49702.1| outer membrane protein [Bacteroides sp. D1]
 gi|294445124|gb|EFG13798.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 238

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 66  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221


>gi|317182128|dbj|BAJ59912.1| flagellar motor protein MotB [Helicobacter pylori F57]
          Length = 255

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLMQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|296387971|ref|ZP_06877446.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           PAb1]
 gi|313108871|ref|ZP_07794854.1| putative outer membrane protein precursor, OmpA family [Pseudomonas
           aeruginosa 39016]
 gi|310881356|gb|EFQ39950.1| putative outer membrane protein precursor, OmpA family [Pseudomonas
           aeruginosa 39016]
          Length = 321

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             + L  +GV E +I+ +  +      +A++     + NRR+ + +  R+ 
Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283


>gi|150007860|ref|YP_001302603.1| OmpA family outer membrane protein [Parabacteroides distasonis ATCC
           8503]
 gi|262381639|ref|ZP_06074777.1| outer membrane protein [Bacteroides sp. 2_1_33B]
 gi|298376779|ref|ZP_06986734.1| lipoprotein PG3 [Bacteroides sp. 3_1_19]
 gi|301310112|ref|ZP_07216051.1| lipoprotein PG3 [Bacteroides sp. 20_3]
 gi|149936284|gb|ABR42981.1| outer membrane protein, OmpA family [Parabacteroides distasonis
           ATCC 8503]
 gi|262296816|gb|EEY84746.1| outer membrane protein [Bacteroides sp. 2_1_33B]
 gi|298266657|gb|EFI08315.1| lipoprotein PG3 [Bacteroides sp. 3_1_19]
 gi|300831686|gb|EFK62317.1| lipoprotein PG3 [Bacteroides sp. 20_3]
          Length = 227

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +TL        V           + ++     +  +F  +SS     + 
Sbjct: 73  KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 123

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+     L  + +  I I G TD +        N  LS  RA S Y  LM  GVS DR
Sbjct: 124 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 180

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +    G   H    ++D     S NRR++I++   Q
Sbjct: 181 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 215


>gi|74316262|ref|YP_314002.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
 gi|74055757|gb|AAZ96197.1| probable outer membrane protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 331

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 101/241 (41%), Gaps = 19/241 (7%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN-SLTRDSEKGKDLCKST 161
            E   + + ++ +   + ++   RLE     ++ ++Q       +  + +E+ + L    
Sbjct: 91  QETAKRKAAEISVTEASAERDRVRLEARTAEVAAARQQATQAELTAQQQAERDRALIAER 150

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           + E    +++       ++++  A++  +  +Q    +I+     L A N  K      T
Sbjct: 151 EAEVEAARQQAATAEEAARQRADALEAARLEIQRAQTRIAEQEEQLQALNAKK------T 204

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRN 279
             G+++++ D     +F  + +   P  +  +QK+ + L    T  + I GHTD++    
Sbjct: 205 DRGLVVTLGD----VLFGVNKADLTPGGMRNVQKLADFLKQYETRKLLIEGHTDST---G 257

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
               N  LS  RA +    L+  GV  +RI    G+       +++       NRR++++
Sbjct: 258 GDALNQALSERRAEAVKTALIGMGVDGERI-ATRGYGKAFPVASNNTAAGRQLNRRVEVV 316

Query: 338 V 338
           +
Sbjct: 317 L 317


>gi|19704459|ref|NP_604021.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714725|gb|AAL95320.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 315

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 12/246 (4%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
           NK+     +  T+              Q       ++   N+  +     + +  ++   
Sbjct: 76  NKVTGVTLQVDTQGEGQYLDEKNKISFQIGADGTGVYKDENNDTTITIGENNSTYTKGNI 135

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
            +  + D   + N +E   L     +    +  K +  ++  K            +V  V
Sbjct: 136 TIENNGDGSGTYNDKEKELLIENDGKGKAIITLKGKTIEVEAKPLEKPEKFPKLKMVPPV 195

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDA 274
                   +LI++    +  +FD       PE   VL+ +  VL  +      I GHTD+
Sbjct: 196 -PSIEANSLLITL---DSGILFDVDKYDVRPEAEEVLKNLVIVLKEADIKAFEIDGHTDS 251

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332
                    N  LS +RA +    L   G+  +    I G+   R   ++D       NR
Sbjct: 252 DA---SDEHNQVLSENRANAVKNFLTSQGIMAE--ITIKGYGESRPIASNDTPEGKQKNR 306

Query: 333 RIDILV 338
           R++I++
Sbjct: 307 RVEIVI 312


>gi|15598722|ref|NP_252216.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
 gi|218890247|ref|YP_002439111.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254242186|ref|ZP_04935508.1| hypothetical protein PA2G_02920 [Pseudomonas aeruginosa 2192]
 gi|9949675|gb|AAG06914.1|AE004773_3 probable outer membrane protein precursor [Pseudomonas aeruginosa
           PAO1]
 gi|126195564|gb|EAZ59627.1| hypothetical protein PA2G_02920 [Pseudomonas aeruginosa 2192]
 gi|218770470|emb|CAW26235.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
          Length = 321

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             + L  +GV E +I+ +  +      +A++     + NRR+ + +  R+ 
Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283


>gi|262041576|ref|ZP_06014773.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041137|gb|EEW42211.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 488

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
             + +  +   +  +FD   +      T V++  +  + A    +I + G+TD +     
Sbjct: 341 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 397

Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + N +LSL RA +    +L  S +       + G         +D     +ANRR++I 
Sbjct: 398 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 456

Query: 338 VEDR 341
           +  R
Sbjct: 457 LVPR 460


>gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gi|124483422|emb|CAM32584.1| signal peptide protein [Herbaspirillum seropedicae]
 gi|300075775|gb|ADJ65174.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   P     L ++   L      + I  GHTD+    ++A  N +LS+ RA S
Sbjct: 97  FFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDS--IGSVAY-NQKLSVRRAES 153

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342
               L+  GV  +R+    G    +      +    + NRR++I +V  R+
Sbjct: 154 VKAYLVSKGVEANRVY-TEGKGKSQPVADNKTAAGRAKNRRVEIEVVGTRK 203


>gi|124003886|ref|ZP_01688734.1| OmpA/MotB, putative [Microscilla marina ATCC 23134]
 gi|123990941|gb|EAY30408.1| OmpA/MotB, putative [Microscilla marina ATCC 23134]
          Length = 389

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               F+ + +  LP +   L K+  +L    +  + I GHTD          N +LS  R
Sbjct: 284 KNIFFEFAKARLLPASFPELDKLVNLLTTHPQIKVRIMGHTDNV---GTDTRNLQLSNRR 340

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A S    L K G+  +R++   GF   R   ++        NRR++ +V 
Sbjct: 341 AKSVVTYLKKQGIRANRLT-FKGFGESRPIDSNVTKEGRQKNRRVEFVVL 389


>gi|315586519|gb|ADU40900.1| flagellar motor protein MotB [Helicobacter pylori 35A]
          Length = 255

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ L++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|284035694|ref|YP_003385624.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283814987|gb|ADB36825.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 236

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+   A++I   +              E    GI +S+    +  +FD  S    PET 
Sbjct: 84  RRMDKQAEEIKRQM---------PNAQVERVGEGIKVSL---GSDILFDVDSYALKPETK 131

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L +  + L    +  + I GH DA+        N  LS  RA +    L   GV   R
Sbjct: 132 QQLIEFAKSLNKYEDTDVRIEGHADAT---GSDSHNLELSKQRAKAVGSFLESQGVKTSR 188

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           + +I G+   +     +++     NRR+D+ V
Sbjct: 189 VDEI-GYGEAQPVADNSTEAGRRKNRRVDVAV 219


>gi|116051525|ref|YP_789639.1| OmpA family membrane protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586746|gb|ABJ12761.1| putative outer membrane protein precursor, OmpA family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 321

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             + L  +GV E +I+ +  +      +A++     + NRR+ + +  R+ 
Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283


>gi|71907808|ref|YP_285395.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847429|gb|AAZ46925.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 261

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  ++   P   V+L ++   +    T  + + GHTD+       + N  LSL RA S 
Sbjct: 158 FEVGAATLTPAGRVILDEMYAAIKQIGTPKVQVIGHTDS---SGSRQANIALSLSRANSV 214

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
              L++ G+  D ++ + G    +   ++D     + NRRI+
Sbjct: 215 RSYLIEKGLPADGLTAV-GSGPDQPVGSNDSSEGRAKNRRIE 255


>gi|110638331|ref|YP_678540.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281012|gb|ABG59198.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 424

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           ++  + P   E    +     LQ      S  +     +   K       + G  I +  
Sbjct: 261 QDEPVKPAVIENTTVVSTTTILQ--PADTSKQIKTTKTEIKPKDESVFDVKKGDKIVL-- 316

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
                +F +S    LPE+   L ++   +    ++ I + GHTD    R++   N +LS 
Sbjct: 317 --KHVLFVQSKDDFLPESYAELDRLVATMNQHPQITIEVSGHTDNQGNRDL---NLKLSE 371

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           +RA      L+  G+   RI+ + G+   +   A+D       NRR++
Sbjct: 372 ERAIKVKDYLVSRGIEAKRIN-VKGYGPDKPISANDTEEHRRLNRRVE 418


>gi|126640934|ref|YP_001083918.1| putative outer membrane protein [Acinetobacter baumannii ATCC
           17978]
 gi|169796935|ref|YP_001714728.1| putative outer membrane protein [Acinetobacter baumannii AYE]
 gi|184157155|ref|YP_001845494.1| outer membrane protein, related peptidoglycan-associated
           (lipo)protein [Acinetobacter baumannii ACICU]
 gi|213156662|ref|YP_002318323.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057]
 gi|215484397|ref|YP_002326628.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB307-0294]
 gi|239503181|ref|ZP_04662491.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB900]
 gi|260555775|ref|ZP_05827995.1| type VI secretion system OmpA/MotB [Acinetobacter baumannii ATCC
           19606]
 gi|301347224|ref|ZP_07227965.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB056]
 gi|301512729|ref|ZP_07237966.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB058]
 gi|301597873|ref|ZP_07242881.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB059]
 gi|332853740|ref|ZP_08434952.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332871140|ref|ZP_08439738.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332874156|ref|ZP_08442080.1| OmpA family protein [Acinetobacter baumannii 6014059]
 gi|126386818|gb|ABO11316.1| putative outer membrane protein [Acinetobacter baumannii ATCC
           17978]
 gi|169149862|emb|CAM87753.1| putative outer membrane protein [Acinetobacter baumannii AYE]
 gi|183208749|gb|ACC56147.1| Outer membrane protein, related peptidoglycan-associated
           (lipo)protein [Acinetobacter baumannii ACICU]
 gi|213055822|gb|ACJ40724.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057]
 gi|213988304|gb|ACJ58603.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii
           AB307-0294]
 gi|260410686|gb|EEX03984.1| type VI secretion system OmpA/MotB [Acinetobacter baumannii ATCC
           19606]
 gi|322507052|gb|ADX02506.1| Putative outer membrane protein [Acinetobacter baumannii 1656-2]
 gi|323516919|gb|ADX91300.1| Outer membrane protein, related peptidoglycan-associated
           (lipo)protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332728426|gb|EGJ59801.1| OmpA family protein [Acinetobacter baumannii 6013150]
 gi|332731726|gb|EGJ63007.1| OmpA family protein [Acinetobacter baumannii 6013113]
 gi|332737631|gb|EGJ68534.1| OmpA family protein [Acinetobacter baumannii 6014059]
          Length = 217

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GV   RI 
Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGVPSSRID 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +   +    NRR++I +  +Q
Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217


>gi|148652893|ref|YP_001279986.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571977|gb|ABQ94036.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1]
          Length = 314

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+   S+  P     L ++ + +      I+ I GHTD    R     N  LS  RA +
Sbjct: 209 LFETDKSVVRPSYYRKLSEVADFMNKYPSTIATIEGHTDD---RASDSYNLALSQRRADA 265

Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              V + +  +  +R+  I G+   + +  +D       NRR+  ++E+
Sbjct: 266 VRNVFIHEFDIDSNRLKAI-GYGESKPRATNDTAEGRQLNRRVMAVIEE 313


>gi|325279362|ref|YP_004251904.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311171|gb|ADY31724.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 235

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+    K++ +     +    V+ V        I ++     N  +F  + S   P + 
Sbjct: 80  RRMDKQKKELEA-----IEGAKVESVQDVNNLQAIKVTF---DNGILFATNKSELSPASR 131

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K    L +S +  ++I GHTD +  R +   N R+S +RA +    L+  G+S  R
Sbjct: 132 EALTKFATSLKNSPDTDVTIYGHTDNTGTRAV---NERISKERADAVANFLVGQGISRSR 188

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           ++   G A  +    +      + NRR++I +
Sbjct: 189 LT-TEGLAFDQPVADNSTAEGRAQNRRVEIYI 219


>gi|170697917|ref|ZP_02889001.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170137192|gb|EDT05436.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 587

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           ++   +  +FD   +     T   +    E++       + + G+ D          N +
Sbjct: 462 VVTLDSMSLFDSGKARLRTGTTRAMVDALELIKAHPGKRVLVAGYADDQ---GRPDRNLK 518

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS+DRA +    L+++ G+   R   I G+   R    +      + NRR++I +  
Sbjct: 519 LSIDRASAVRDWLIEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 574


>gi|319955316|ref|YP_004166583.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319423976|gb|ADV51085.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 238

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 19/153 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPET 248
            R+   A++I   + G            E TR G  I+++   +  + FD + S+    +
Sbjct: 86  NRMDKQAERIEEEIPGA-----------EVTRVGEGINVVFNEDAGVYFDTNKSVVKGTS 134

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L ++  +L    +  I + GHTD+      A  N  LS  RA S    L   G+S +
Sbjct: 135 ATILDRLVGILKEYPDSNILVEGHTDS---AGPADYNMNLSKQRAESVTSYLNTHGISSN 191

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R++    +   + K  +      + NRR+++++
Sbjct: 192 RLT-TKWYGETQPKSDNSTTEGKAKNRRVEMVI 223


>gi|313674153|ref|YP_004052149.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312940851|gb|ADR20041.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 485

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 18/291 (6%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           W       +    I   F     ++  +   ++ +  P    ++N    ++ E + +  +
Sbjct: 208 WDEWTEPKNLGNVINTKFEETFVSIDPSFDYLYYDSYPSGAQNRNIWRATLSEELKEEII 267

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
             +  +  ++   +     I    + +QSE      T ++E   +  +    E +   E 
Sbjct: 268 KARDQNKKKEIIEEPQSEEIIAKESDKQSEKIP---TENAESVANAKQPLQDEPTTAMES 324

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
                 + +E     ++++  Q    +I   +     D  +K  L +    G  I     
Sbjct: 325 QPVAVKIDQEMDYVKEQERNNQGFLAQIGEKIGLGGKDEEIK--LIDAGAKGQKI----- 377

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
                F   S     +   +L KI E L  + +  I + GHTDA         N  LS  
Sbjct: 378 NRNVYFKFDSDKLQGKFNSLLDKISEELEKNPQIKIMLEGHTDAI---GGEDINIDLSCS 434

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILV 338
           RA      L+  G+++ RI  IS     R    +D        NRR++  +
Sbjct: 435 RANKVKDALIDRGINQYRIE-ISCEGKERPIATNDDEFEGRELNRRVEFYL 484


>gi|260494612|ref|ZP_05814742.1| OmpA family membrane protein [Fusobacterium sp. 3_1_33]
 gi|260197774|gb|EEW95291.1| OmpA family membrane protein [Fusobacterium sp. 3_1_33]
          Length = 396

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      I GHTD+       + N  
Sbjct: 285 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 341

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS +RA +    L   G++ +    I G+   R   ++D       NRR++I++
Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDTPEGKQKNRRVEIVI 393


>gi|152985175|ref|YP_001347005.1| outer membrane protein [Pseudomonas aeruginosa PA7]
 gi|150960333|gb|ABR82358.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
          Length = 321

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             + L  +GV E +I+ +  +      +A++     + NRR+ + +
Sbjct: 235 VQEYLKGNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL 279


>gi|308188742|ref|YP_003932873.1| OOP family outer membrane lipoprotein yiaD precursor [Pantoea
           vagans C9-1]
 gi|308059252|gb|ADO11424.1| Putative OOP family outer membrane lipoprotein yiaD precursor
           [Pantoea vagans C9-1]
          Length = 220

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD SSS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRNGDNIVLN-MPNNVTFDSSSSNLKPAGANTLTGVSMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R +   N RLS  RA S    L+  GV+ DR+ +  G       
Sbjct: 142 PKTAVNVVGYTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRL-RTQGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 198 ATNSTEAGKAQNRRVEITL 216


>gi|126740854|ref|ZP_01756539.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
 gi|126718150|gb|EBA14867.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
          Length = 308

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 21/211 (9%)

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
               +      SL           +  +    +  +     P  S   +  +  ++   D
Sbjct: 116 PGQAEQAQEVVSLLVSHSGYATFLQIIETGPVMEDQPPETEPAASSPNLSEVSDEEAKPD 175

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
                S  LS          V+ E    G++           F   S       +  L++
Sbjct: 176 SGDHQSEALSLSSQLLAEGHVILE----GLV-----------FKSGSVRLGQRAVQSLEE 220

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312
           + + L    E  + I GHTD+         N  LS  RA +    L+++ G+   R+   
Sbjct: 221 LAQFLKDHPEARVLIVGHTDSV---GSLASNRSLSERRAEAVRGALIENSGIDNARVQAT 277

Query: 313 -SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
             G+A       S      NRR++ ++   +
Sbjct: 278 GVGYAAPIASNLSPAGREKNRRVEAVLLSSK 308


>gi|317180579|dbj|BAJ58365.1| flagellar motor protein MotB [Helicobacter pylori F32]
          Length = 257

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|88857596|ref|ZP_01132239.1| probable outer membrane protein [Pseudoalteromonas tunicata D2]
 gi|88820793|gb|EAR30605.1| probable outer membrane protein [Pseudoalteromonas tunicata D2]
          Length = 293

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 32/254 (12%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC-KNSLTRDSEKGKDLCKSTDLEKSI 167
           NS++      N      R      + +     +    + L   +E+  D+ ++    + +
Sbjct: 43  NSLEGNQNLANMAPMAVRDARTAVFNAEQPSKDPELADHLVFIAERKVDIAQAESQRRYL 102

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI---------------- 211
            ++ + F+      ++ A  ++  L  L+   +   +     N+                
Sbjct: 103 EQQRSEFIAERDNMQLEARIKESELAKLSATQAKDEAAQAQQNLYYAKQETAGAKQKVKD 162

Query: 212 ----VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVI 266
               +  +    +  G +I++ D     +FD + S   P  I  L K+   L  +    I
Sbjct: 163 IQHQLDQLDARNSARGSVITLGD----VLFDFNKSDIKPAAISHLAKLATFLNTNIDRNI 218

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +I GHTD        + N  LS  RA S    L+  GV+  RI + SG       I +  
Sbjct: 219 TIEGHTDNI---GSKKFNLLLSQRRADSIKDYLIGQGVARGRI-QTSGKGISLPVIDNTT 274

Query: 327 MNSA--NRRIDILV 338
            +    NRR+++++
Sbjct: 275 ADHREQNRRVEVII 288


>gi|299145363|ref|ZP_07038431.1| lipoprotein PG3 [Bacteroides sp. 3_1_23]
 gi|298515854|gb|EFI39735.1| lipoprotein PG3 [Bacteroides sp. 3_1_23]
          Length = 238

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 66  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221


>gi|145219523|ref|YP_001130232.1| OmpA/MotB domain-containing protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205687|gb|ABP36730.1| OmpA/MotB domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 229

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 10/138 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                D+ V+G   E     I + + D     +F   SS     +   ++K+  +L   +
Sbjct: 82  QAEEIDSQVEGARVERVGESIRV-VFDS--GILFSTGSSTLTSTSRYNIEKLARILNRYS 138

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTDA         N  LS  RA S   +L   GVS  R+S + G+   R   
Sbjct: 139 NTNLVIEGHTDAI---GAESLNQTLSERRAESVANLLAGYGVSRYRLSPV-GYGETRPIA 194

Query: 323 ASDPM--NSANRRIDILV 338
           +++       NRR+++L+
Sbjct: 195 SNETEYGRRLNRRVEVLI 212


>gi|310780073|ref|YP_003968405.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
 gi|309749396|gb|ADO84057.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
          Length = 216

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS        VL  +  +L       I + GHTD +        N RLS +RA S 
Sbjct: 112 FRTGSSDINSGFYDVLDSVATILVEYKDTTIFVSGHTDNT---GSLATNQRLSQERANSV 168

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            + L   GV   RIS   GF +     ++   +    NRR++I +
Sbjct: 169 GRYLSSRGVLSSRISS-QGFDYQFPIASNSTASGREQNRRVEIEI 212


>gi|116326910|ref|YP_796630.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332434|ref|YP_802152.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116119654|gb|ABJ77697.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116126123|gb|ABJ77394.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 545

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
           F+    G  IS+    ++  F   S   L ++  +L+ +   L  +    I I GHTD  
Sbjct: 426 FQELEKGKSISL----DSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTD-- 479

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIA-SDP-MNSANR 332
                 +DN  LS +RA +    L++ G+   RI  ++ G       I   DP  +  NR
Sbjct: 480 -LNGDYQDNIILSHNRANAVKDYLVRKGIDSGRI--VTDGKGSSEPIIPRKDPKTDYKNR 536

Query: 333 RIDILV 338
           R +  +
Sbjct: 537 RTEFQI 542


>gi|148652191|ref|YP_001279284.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571275|gb|ABQ93334.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1]
          Length = 403

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 215 VLFETTRTG--ILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           V       G  + + I D+        FD   S+   +    + K+ E +        SI
Sbjct: 257 VNTVVDENGCPVQVQIDDELKMELRVFFDNDKSVIKEQYKPEIAKVAEKMREYPNSSASI 316

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM 327
            GH  AS     AR N RLS  RA +   +L    GV+ +R+S + G+ + R    +D  
Sbjct: 317 EGH--ASKTGPSARYNQRLSEARAIAVKTMLTNEFGVAPNRLSTV-GYGYDRPIAPNDTE 373

Query: 328 --NSANRRI 334
              + NRR+
Sbjct: 374 EGRAMNRRV 382


>gi|74316145|ref|YP_313885.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
 gi|74055640|gb|AAZ96080.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
          Length = 415

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           +    E ++ G ++ + +  N   F   S+   P+ + VL +   VL   T+  + + GH
Sbjct: 293 QAAQLERSQAGDVVVLPEGVN---FAFDSAELRPDAVTVLDEAVTVLNRRTDIKVDVVGH 349

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329
           T           N  LS  RA S Y   + +GV+ DR++   G+   R   ++D      
Sbjct: 350 TCNI---GPEAYNQGLSERRAKSVYDYFIDNGVAADRLT-TQGYGETRPAYSNDTREGRE 405

Query: 330 ANRRIDILVE 339
            NRR+++ V+
Sbjct: 406 KNRRVELHVK 415


>gi|85709715|ref|ZP_01040780.1| outer membrane protein [Erythrobacter sp. NAP1]
 gi|85688425|gb|EAQ28429.1| outer membrane protein [Erythrobacter sp. NAP1]
          Length = 231

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K+  D  +++   L G        GV  E       I ++   +   F   S+   P   
Sbjct: 76  KQFDDQIRELDEELEGT-------GVDVEEIGDQDAI-LVRLPDGVTFASGSATINPGFY 127

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L  +   L       + + G TD +        N RLS  RA +    L   GV+  R
Sbjct: 128 DSLNSVANSLIQYPNSLVDVYGFTDTT---GSDSLNQRLSEQRAQAVADYLASRGVARSR 184

Query: 309 ISKISGFAHH----RLKIASDPMNSANRRIDILVED 340
           +    G+       R+K A       NRR++I +  
Sbjct: 185 L-ATRGYGESYDYLRIKTADGVAEPLNRRVEIKIIP 219


>gi|332519368|ref|ZP_08395835.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045216|gb|EGI81409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 370

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              +F+   +I +  +I  L K+   L  +    I I GHTD      +A+ N  LSL R
Sbjct: 262 KNILFEFDKAILVNTSIEELDKLNLHLKENKNLNIEIYGHTDNI---GLAKRNQELSLQR 318

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           A S  + L+  G+ ++RI +  GF   +  + +  +   + NRR++  + D+
Sbjct: 319 AKSVSEYLISKGLKKERI-QWFGFGSSKPLVKNSSEDNRAKNRRVEFKLIDK 369


>gi|126736820|ref|ZP_01752555.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
 gi|126721405|gb|EBA18108.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
          Length = 205

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 17/157 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            +L    +++  +L+          +    T   +++S     N   F   S+   P   
Sbjct: 63  NQLDAQERELRQSLAN-------DSISIVNTGDRLILSF---PNDLTFATDSAAISPVVQ 112

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+ +   L       + + GHTD+      A  N  LS  RA +    +   GV   R
Sbjct: 113 ADLRSVAGSLVRYPNSTVQVIGHTDSD---GDASYNQGLSERRANAVADQIQAGGVPYHR 169

Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
           + +I G    +   ++      + NRR+++++  + G
Sbjct: 170 L-RIIGLGEEQPVASNLTPEGKARNRRVEVVIIPQAG 205


>gi|163786823|ref|ZP_02181271.1| peptidoglycan-associated lipoprotein [Flavobacteriales bacterium
           ALC-1]
 gi|159878683|gb|EDP72739.1| peptidoglycan-associated lipoprotein [Flavobacteriales bacterium
           ALC-1]
          Length = 367

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I +     V    +K +  +     I ++ +      +FD   S  L  +   L ++ + 
Sbjct: 226 IDNVSIESVEKKEMKPIKEKIEEPEIKVNEVYTFKNVLFDFDKSELLDVSKGELNQLYKH 285

Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +    + I GHTD      +   N  LS  RA +    L+  G+   RI +  GF  
Sbjct: 286 LKENKDLKVKIFGHTDNV---GLEARNKELSKQRAKAVVDYLISQGLDVSRI-QFIGFGS 341

Query: 318 HRLKIASDPMNSA--NRRIDILVED 340
            +    +D       NRR++  + D
Sbjct: 342 SKPISDNDTDEGRQLNRRVEFKLTD 366


>gi|312963035|ref|ZP_07777521.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311282804|gb|EFQ61399.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 163

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   FE T  G            +F        P +  ++Q+IG+ L     E + + 
Sbjct: 37  VLKQQGFELTDEGWA---FGLSGKVLFGSDVETLNPPSTEIVQRIGKALLGVGIERVRVD 93

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA         N +LSL RA S   VL   G+ E  + ++ G        ++D    
Sbjct: 94  GHTDA---SGKEIYNQQLSLRRAKSVATVLTGVGMKEQNV-QLRGLGSGEPVASNDTAAG 149

Query: 330 A--NRRIDILV 338
              NRR+ I+V
Sbjct: 150 RTENRRVSIVV 160


>gi|293393749|ref|ZP_06638056.1| OmpA family protein [Serratia odorifera DSM 4582]
 gi|291423576|gb|EFE96798.1| OmpA family protein [Serratia odorifera DSM 4582]
          Length = 220

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 8/143 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDTDSSTLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA      L+  GV+ +RI +  G       
Sbjct: 142 PKTAVNVVGYTDST---GARAHNMTLSQQRADGVASALITQGVAANRI-RTQGAGPDNPI 197

Query: 322 IASDPMN--SANRRIDILVEDRQ 342
            ++      + NRR++I +   Q
Sbjct: 198 ASNSTTEGKAQNRRVEITLSPLQ 220


>gi|149909453|ref|ZP_01898108.1| outer membrane protein [Moritella sp. PE36]
 gi|149807563|gb|EDM67512.1| outer membrane protein [Moritella sp. PE36]
          Length = 214

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +      +    L  + ++L    +  + I GHTD+      A+ N  LS +RA S 
Sbjct: 111 FQTAGYNLSGDIYSSLNSVAKILNEYPKSSLRIVGHTDSV---GSAQSNLTLSEERAESV 167

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            + L K G+   R+    G+   R   +++     +ANRR++I +
Sbjct: 168 SEYLNKRGIKSGRL-STRGYGERRPIASNETKSGRAANRRVEISI 211


>gi|206895822|ref|YP_002246694.1| OmpA family protein [Coprothermobacter proteolyticus DSM 5265]
 gi|206738439|gb|ACI17517.1| OmpA family protein [Coprothermobacter proteolyticus DSM 5265]
          Length = 237

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
                F PP+       M+    + +L   +      +      + +        + + I
Sbjct: 63  PSNPTFSPPMPIPPDFIMQGPMTVAELYSNLGGVEKSIQQQYGSEAIEVIEGVNEVRVRI 122

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIAR-DN 284
                  +F   S+   PET  +L  +   L  +      + I GH   +        D+
Sbjct: 123 S---GDLLFMPCSASIRPETSQILSALAPELVKAQKEGYRVYIEGHAAYTLSTCPGYIDD 179

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           + +S DRA +  +     G+ + +++ + G+  +     + +    + NRR++I +  
Sbjct: 180 FHISSDRALNVLERFKSLGLDDSKMALV-GYGDNVPVGDVNTPQGQAKNRRVEITIRR 236



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
              + +      W + Y D +T ++ FF++++  +  +    + +   F       +   
Sbjct: 3   KRKESSGPGAPLWCLSYGDLVTNMLVFFVMLFAFSTLNATKFEQMAYSF----VVALGGG 58

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
            G+               D  +   +T   +   +G   +  Q Q
Sbjct: 59  MGVLPSNPTFSPPMPIPPDFIMQGPMTVAELYSNLGGVEKSIQQQ 103


>gi|327334842|gb|EGE76553.1| putative outer membrane protein A [Propionibacterium acnes
           HL097PA1]
          Length = 368

 Score = 76.1 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVASNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|317177353|dbj|BAJ55142.1| flagellar motor protein MotB [Helicobacter pylori F16]
          Length = 255

 Score = 76.1 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLMQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVLVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|92116250|ref|YP_575979.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91799144|gb|ABE61519.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 463

 Score = 76.1 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +   P++I +L ++ E  L   T  I I GHTD+      A  N  LS  RA + 
Sbjct: 361 FETGRATLDPDSIGLLDRLTETALRCPTATIEIAGHTDSD---GDASFNQTLSERRAQAV 417

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
              L+K+G+  DR  K  G+   +   A+D     + NRRID  V
Sbjct: 418 VDYLVKAGMPADRF-KPMGYGSVQPIAANDTDEGKAKNRRIDFTV 461


>gi|114320567|ref|YP_742250.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226961|gb|ABI56760.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 326

 Score = 76.1 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +S+  LP++   L+ I E+++   +  + + GHTD++        N  LS++RA +
Sbjct: 221 LFAVNSAEILPDSADALEAIAELMSEQPDLTLLVVGHTDST---GDYDYNLTLSMERAEA 277

Query: 295 AYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
             + L +  G+  DR+    +G         ++   + NRR++++
Sbjct: 278 VVRWLQREHGIDGDRLQAAGAGMMAPVTSNRTEAGRAENRRVELV 322


>gi|52421234|ref|YP_087146.1| putative outer membrane protein [Bacteroides fragilis YCH46]
 gi|52218755|dbj|BAD51347.1| putative outer membrane protein [Bacteroides fragilis YCH46]
          Length = 212

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +N  +F+  S     +   +L ++  V+       ++I GHTD          N  LS +
Sbjct: 101 QNDILFNFDSFELSSQAQTMLNQLCVVINEIPNTKVNIIGHTDNV---GDKNYNMVLSKN 157

Query: 291 RAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           RA S    +  SGV  D I++   G +       ++   + NRR++I +
Sbjct: 158 RALSVGNYMRSSGVDGDNITEDGKGLSSPIADNKTESGRAKNRRVEIYI 206


>gi|170749438|ref|YP_001755698.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655960|gb|ACB25015.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 269

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLD 290
           T  F   S+   PE  + L+ +GE L           I GHTDA         N RLSL 
Sbjct: 117 TVFFAYDSARLTPEARIQLEPLGEALRAQPLAGHAFLIAGHTDA---AGGRAYNRRLSLA 173

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA +    L++  G++ +R+ ++ G+   R K    P++  NRR+++ +
Sbjct: 174 RARAVKAHLVETYGLAPERL-RVHGWGPARPKDPDAPLSRVNRRVEVSL 221


>gi|123444325|ref|YP_001008290.1| putative outer membrane lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122091286|emb|CAL14172.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 219

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 DKTAVNVTGYTDST---GARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|170739239|ref|YP_001767894.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193513|gb|ACA15460.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 178

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S          L +  + L       S   + GHTDA   R     N  LS  RA 
Sbjct: 76  FDYNSDQLTGAAKQNLDEFAKALRDDRLRSSTFLVEGHTDA---RGGEEFNLGLSGRRAD 132

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  + L   GV   +++   G    R     +P++ ANRR++
Sbjct: 133 AVVRYLSGRGVLAAQLTA-RGLGKSRPL-TDNPLDPANRRVE 172


>gi|254236451|ref|ZP_04929774.1| hypothetical protein PACG_02437 [Pseudomonas aeruginosa C3719]
 gi|126168382|gb|EAZ53893.1| hypothetical protein PACG_02437 [Pseudomonas aeruginosa C3719]
          Length = 322

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I ++L        I + GH+D          N  LS  RA +
Sbjct: 179 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             + L  +GV E +I+ +  +      +A++     + NRR+ + +  R+ 
Sbjct: 236 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 284


>gi|117620195|ref|YP_854667.1| putative outer membrane lipoprotein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561602|gb|ABK38550.1| inner membrane lipoprotein YiaD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 218

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  + I++  N   FD SS+         L  +  V+   
Sbjct: 81  VQEAKLREKLQGTGVSVTRNGDQL-ILNMPNNVTFDSSSAQLKAAGANTLSGVAMVVGEF 139

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ GHTD++  R +   N +LS  RA +    L+  GV+  RI   SG    +  
Sbjct: 140 DKTRLNVVGHTDSTGSREL---NMKLSAQRADAVAAQLIGQGVTGSRI-STSGVGPDQPV 195

Query: 322 IASDPMN--SANRRIDILVED 340
             +      + NRR+ I +  
Sbjct: 196 ATNSTAEGKAQNRRVTITLTP 216


>gi|172065635|ref|YP_001816347.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171997877|gb|ACB68794.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 231

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +    L  + E    +    ++I G+TD++     A  N +LS  RA S 
Sbjct: 130 FDTDKSTLKTDARDKLDVLIEAAHGTPFKTVTISGYTDST---GTAEHNQQLSQRRAQSV 186

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            Q L + G+S  +   + G+  +    ++      + NRR+DI +E
Sbjct: 187 AQYLREHGLSAQKFD-VRGYGENNPVASNATPAGRAKNRRVDITLE 231


>gi|313681313|ref|YP_004059051.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154173|gb|ADR32851.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 367

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 229 IDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI 280
           +D    P+       F   S+    E    + +    L  S     +I GHTD++   + 
Sbjct: 250 VDADGCPLKATLHLNFATDSTKVDAEGAAKVAEFASFLKESPAYKANIVGHTDST--ASD 307

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           A  N +LS  RA     +L++ GV   R++   G        ++      + NRRI++
Sbjct: 308 AY-NQKLSEKRAAKVKSMLIEDGVDSSRLTS-EGMGEKMPIASNKTKEGRAENRRIEV 363


>gi|210135015|ref|YP_002301454.1| flagellar motor protein MotB [Helicobacter pylori P12]
 gi|210132983|gb|ACJ07974.1| flagellar motor rotation protein MotB [Helicobacter pylori P12]
          Length = 257

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133
                       PP+   + +   S        + + K     + +     Q  + ++  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119

Query: 134 LSNSQQSEHCKNSLTRD 150
           L +S   E+  +     
Sbjct: 120 LPSSLLFENATSDAINQ 136


>gi|59713511|ref|YP_206286.1| outer membrane lipoprotein [Vibrio fischeri ES114]
 gi|197337177|ref|YP_002157921.1| inner membrane lipoprotein YiaD [Vibrio fischeri MJ11]
 gi|59481759|gb|AAW87398.1| predicted outer membrane lipoprotein [Vibrio fischeri ES114]
 gi|197314429|gb|ACH63878.1| inner membrane lipoprotein YiaD [Vibrio fischeri MJ11]
          Length = 222

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 14/209 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  +++  G+    S              +   + +     ++   +   A       
Sbjct: 18  QATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKERRKNALIGAAAGGAVGGG 77

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256
            G   D   K +  E   +G+ +  + +    +       F  SS          L  + 
Sbjct: 78  VGYYFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQSSSYQLDASIYNTLNGVA 137

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L    +  + I GHTD+      A  N  LS  RA S    L+K  V+  R++   G+
Sbjct: 138 RILVEYPDTALQIDGHTDS---SGNATKNQTLSEQRADSVRTYLIKQDVAAGRVNA-RGY 193

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQ 342
                    ++    + NRR++I +   +
Sbjct: 194 GARYPVCDNSTKQGRACNRRVEITILPLK 222


>gi|45655964|ref|YP_000050.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45599197|gb|AAS68687.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 687

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 18/274 (6%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
           F   L T      +  +P     ++ +DL  +  I KN    +       +  +      
Sbjct: 416 FATTLQTGKVYKIEISSPGFHPQEDILDLRGN--IGKNRKVYRTYVLLPIQVGEGKTEET 473

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                 +  +    +L              D + ++    N     L ++        K+
Sbjct: 474 KIEQPIENQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKK 533

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN-------TPMFDKSSSI 243
           L D   ++ +T S  ++++I   +    ++ G + I +  + +          F+ + + 
Sbjct: 534 LPDNDFELFATASKYISESI-NIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTK 592

Query: 244 PLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              E   +L  + G +L ++++ I I GHTD     +    N RLS  RA + Y+ L+  
Sbjct: 593 ITEENKKLLDPLVGYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRARNVYEYLLSK 649

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           G+ E R+ +I  + + +    ++     + NRR+
Sbjct: 650 GIPEKRM-RIRAYWYSQPDADNETETGRAKNRRV 682


>gi|284039059|ref|YP_003388989.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283818352|gb|ADB40190.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 427

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 85/270 (31%), Gaps = 16/270 (5%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
             K+  +  K     +  P R+          E +  ++  + +             N I
Sbjct: 168 PRKDSYSQRKPPVQPRQQPPRTVPRPQPEPPTEQLPPDNTPVPVQPKVLPAPATVAINGI 227

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
              + ++Q      +    S       +  D  +S +    Y +    +         K 
Sbjct: 228 TRDAKTKQPITATVTYRLISGAEASGDEPADSLQSGSLTGKYRIEIDRRGVYAVTASAKG 287

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
               +  + +        ++ +         G  I++        F+ S     PE+   
Sbjct: 288 YFSQSDTLVTN-----RVDVARDFNLVPIEAGAKITL----KNIYFNVSKYDLKPESYPE 338

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++  V+  +    I + GHTD          N  LS +R     + L+  G+S  RI 
Sbjct: 339 LDRLVTVMRSNPTMQIRLEGHTDTV---GEFDANVELSRNRVNEVKRYLVDKGISASRIE 395

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILV 338
            + G+   R    +        NRR+++++
Sbjct: 396 TV-GYGPSRPINTNKSLKERPENRRVEMVI 424


>gi|227873496|ref|ZP_03991745.1| OmpA family membrane protein [Oribacterium sinus F0268]
 gi|227840670|gb|EEJ51051.1| OmpA family membrane protein [Oribacterium sinus F0268]
          Length = 414

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 93/273 (34%), Gaps = 19/273 (6%)

Query: 73  GKNLMTASKGIFDEQNPPERS----SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
               + A +GI  ++N          Q  I L ++   T    D   G T Q  +     
Sbjct: 151 AGQYVDAERGITIQRNTDGSGQYVDEQKGITLQVNSDGTGQYSDDGQGITLQVSEGG--- 207

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           N IF  +  + +    +  T  ++   D+    D   S    E         +    +  
Sbjct: 208 NGIFTDTKKEITMMVSDDSTSYTQGSIDIDVKPDGSGSYYNSETGLSIKNDGQGKAVISL 267

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
               + +  +     + L   ++V  V        +LI++    +  +FD       P+ 
Sbjct: 268 GNDEKTVDARPLEKPTKLPKLSMVPAV-PSLEANSLLITL---DSGVLFDVDKYDIRPDA 323

Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L  +  VL         I GHTD+    +    N  LS +RA S    L   GV+ +
Sbjct: 324 EKILNDLATVLKEGGITAFQIDGHTDSM---DTDEHNQVLSENRANSVKSYLASQGVTAE 380

Query: 308 RISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
                 G+   R    +D       NRR++I+V
Sbjct: 381 --ITTHGYGESRPVATNDTAEGRQQNRRVEIIV 411


>gi|124007678|ref|ZP_01692381.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123986800|gb|EAY26572.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 705

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    ++ V L K+ +++  +    + I  HTD      +   N RLS  RA S 
Sbjct: 598 FASGSSKLDEDSYVELAKVVQLMENNKDIKLEISAHTDNV---GVYSRNMRLSRQRAQSV 654

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  L+K+GV + R+    G+   R  + +      + NRR++  V
Sbjct: 655 FNYLIKTGVDKKRLVS-KGYGSARPLVPNTTKKNKAKNRRVEFKV 698


>gi|238793173|ref|ZP_04636801.1| Inner membrane lipoprotein yiaD [Yersinia intermedia ATCC 29909]
 gi|238727546|gb|EEQ19072.1| Inner membrane lipoprotein yiaD [Yersinia intermedia ATCC 29909]
          Length = 219

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD+         N  LS  RA S    L+  GV+ +RI + SG       
Sbjct: 142 DKTAVNVTGYTDS---SGARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|296328184|ref|ZP_06870715.1| outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154696|gb|EFG95482.1| outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 394

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      I GHTD+         N  
Sbjct: 283 LITLDSGILFDVDKYDVRPEAEEVLKNLVIVLKEADIKAFEIDGHTDSDA---SDEHNQV 339

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS +RA +    L   G+  +    I G+   R   ++D       NRR++I++
Sbjct: 340 LSENRANAVKNFLTSQGIMAE--ITIKGYGESRPIASNDTPEGKQKNRRVEIVI 391


>gi|74318359|ref|YP_316099.1| hypothetical protein Tbd_2341 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057854|gb|AAZ98294.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 225

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +   AK +   L   +    +  V    +   +L+S+        FD  S+      +  
Sbjct: 78  MDQQAKDLQKQLRPEIEHGDIS-VEKRASDNALLVSMTASTG---FDNDSAALKAGYLPT 133

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L KI  VL    +  +++ GHTD+       + N  LS  RA S         V+  R+ 
Sbjct: 134 LDKISRVLNQYGKTTVTVIGHTDSV---GTTQYNQALSERRAQSVLDYFASQKVNPLRLE 190

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              G      +  +   +    NRR+++ +  
Sbjct: 191 S-YGKGETEPRADNSTEDGRRLNRRVELWILP 221


>gi|78358627|ref|YP_390076.1| OmpA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221032|gb|ABB40381.1| OmpA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 306

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           +   ++ I+   +  +F   S + LP  I VL +I   L      + + GHT        
Sbjct: 107 QQNSMVQILSINDAVLFRPGSFVLLPGGIKVLDRILPWLLRVEHPLLLAGHTATQRAEEG 166

Query: 281 AR-----------DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327
                          WRLS  R  + Y+ L   G+  + + K+  FAH+R +    +   
Sbjct: 167 QEYKVVFDEKQLAPTWRLSFMRVMAVYRYLTGRGMPAENL-KVEAFAHYRPRFDGTTPDG 225

Query: 328 NSANRRIDILVEDR 341
              N R+DI+++ R
Sbjct: 226 RRRNSRVDIVLDKR 239



 Score = 42.6 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKN 75
           + +K            W I ++D MT+++ FF+++  ++  D+      +      FG  
Sbjct: 1   MARKKNKKGGGGGAPKWLITFSDMMTLMLTFFVLLVSMSVLDERRKLVVLASVTGAFGIG 60

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
             + +    D  N        ++    D    K+
Sbjct: 61  SGSFNPHAEDGANRIVEPGPMQMGSVNDLQPLKD 94


>gi|314955058|gb|EFS99464.1| OmpA family protein [Propionibacterium acnes HL027PA1]
          Length = 368

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|313144174|ref|ZP_07806367.1| OmpA family protein [Helicobacter cinaedi CCUG 18818]
 gi|313129205|gb|EFR46822.1| OmpA family protein [Helicobacter cinaedi CCUG 18818]
          Length = 156

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270
           ++G     +R G  I I++      F   S     +   VL K  +VL    + I ++ G
Sbjct: 21  LQGTGVSVSREGDGI-ILNMPGDITFKSGSDDLSSDFYKVLNK--KVLNKYDKTIVTVVG 77

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD +      + N  LS  RA S    L    V  +R   + G        ++      
Sbjct: 78  FTDNT---GSDKTNLALSKKRAESVAAYLQNQKVKTERFV-VDGLGESEPIASNKTAEGR 133

Query: 329 SANRRIDILVEDRQ 342
           + NRR++I +   Q
Sbjct: 134 AKNRRVEISLTAIQ 147


>gi|153870654|ref|ZP_02000009.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS]
 gi|152072883|gb|EDN69994.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS]
          Length = 187

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 13/150 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP---MFDKSSSIPLPETIVVL 252
           A +I + L+        +         G+     D        +FD  S++  PE+  +L
Sbjct: 39  ADEIINALTPKPTYQRERKGFIR-DDKGVKAIRADDPKVGALILFDFDSAVIKPESYPLL 97

Query: 253 QKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
           ++  + L        I I GHTD          N  LS  R+ S    L+ + G+++ R+
Sbjct: 98  REFAKALQSGLVDAQIIIAGHTDN---SGTETYNLNLSEQRSQSVKAFLISAYGIADTRL 154

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           + I      +    ++  +    NRR++ +
Sbjct: 155 T-IKAHGESQPIEPNETESGRMKNRRVEFI 183


>gi|57169060|ref|ZP_00368187.1| fibronectin-binding protein [Campylobacter coli RM2228]
 gi|57019518|gb|EAL56209.1| fibronectin-binding protein [Campylobacter coli RM2228]
          Length = 332

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 229 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 285

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L K GV + RI  + G+   + + +++     + NRR+D
Sbjct: 286 AKELEKFGVDKSRIQTV-GYGQDKPRSSNETKEGRADNRRVD 326


>gi|148287120|emb|CAK36854.1| outer membrane protein A [Bordetella ansorpii]
          Length = 181

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++   +        I  GHTD+    + A  N +LS  RA S
Sbjct: 75  FFDFDKSTLKPEGRQLLDQVASQVNTINLETLIAVGHTDS--IGSDAY-NQKLSERRAAS 131

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +   ++      + NRR++I +V  R+
Sbjct: 132 VKSYLVSKGIDPNRIY-TEGKGEKQPVASNSTREGRAKNRRVEIEIVGTRR 181


>gi|50841753|ref|YP_054980.1| putative outer membrane protein A [Propionibacterium acnes
           KPA171202]
 gi|289424480|ref|ZP_06426263.1| OmpA family protein [Propionibacterium acnes SK187]
 gi|289428850|ref|ZP_06430530.1| OmpA family protein [Propionibacterium acnes J165]
 gi|295129833|ref|YP_003580496.1| OmpA family protein [Propionibacterium acnes SK137]
 gi|50839355|gb|AAT82022.1| putative outer membrane protein A [Propionibacterium acnes
           KPA171202]
 gi|289155177|gb|EFD03859.1| OmpA family protein [Propionibacterium acnes SK187]
 gi|289157851|gb|EFD06074.1| OmpA family protein [Propionibacterium acnes J165]
 gi|291376750|gb|ADE00605.1| OmpA family protein [Propionibacterium acnes SK137]
 gi|313765278|gb|EFS36642.1| OmpA family protein [Propionibacterium acnes HL013PA1]
 gi|313772807|gb|EFS38773.1| OmpA family protein [Propionibacterium acnes HL074PA1]
 gi|313793172|gb|EFS41239.1| OmpA family protein [Propionibacterium acnes HL110PA1]
 gi|313806398|gb|EFS44905.1| OmpA family protein [Propionibacterium acnes HL087PA2]
 gi|313810947|gb|EFS48661.1| OmpA family protein [Propionibacterium acnes HL083PA1]
 gi|313814554|gb|EFS52268.1| OmpA family protein [Propionibacterium acnes HL025PA1]
 gi|313815353|gb|EFS53067.1| OmpA family protein [Propionibacterium acnes HL059PA1]
 gi|313817476|gb|EFS55190.1| OmpA family protein [Propionibacterium acnes HL046PA2]
 gi|313821987|gb|EFS59701.1| OmpA family protein [Propionibacterium acnes HL036PA1]
 gi|313824117|gb|EFS61831.1| OmpA family protein [Propionibacterium acnes HL036PA2]
 gi|313826484|gb|EFS64198.1| OmpA family protein [Propionibacterium acnes HL063PA1]
 gi|313831713|gb|EFS69427.1| OmpA family protein [Propionibacterium acnes HL007PA1]
 gi|313834406|gb|EFS72120.1| OmpA family protein [Propionibacterium acnes HL056PA1]
 gi|313840403|gb|EFS78117.1| OmpA family protein [Propionibacterium acnes HL086PA1]
 gi|314917220|gb|EFS81051.1| OmpA family protein [Propionibacterium acnes HL050PA1]
 gi|314921721|gb|EFS85552.1| OmpA family protein [Propionibacterium acnes HL050PA3]
 gi|314926563|gb|EFS90394.1| OmpA family protein [Propionibacterium acnes HL036PA3]
 gi|314931072|gb|EFS94903.1| OmpA family protein [Propionibacterium acnes HL067PA1]
 gi|314959098|gb|EFT03200.1| OmpA family protein [Propionibacterium acnes HL002PA1]
 gi|314961372|gb|EFT05473.1| OmpA family protein [Propionibacterium acnes HL002PA2]
 gi|314964584|gb|EFT08684.1| OmpA family protein [Propionibacterium acnes HL082PA1]
 gi|314969683|gb|EFT13781.1| OmpA family protein [Propionibacterium acnes HL037PA1]
 gi|314974747|gb|EFT18842.1| OmpA family protein [Propionibacterium acnes HL053PA1]
 gi|314977055|gb|EFT21150.1| OmpA family protein [Propionibacterium acnes HL045PA1]
 gi|314980286|gb|EFT24380.1| OmpA family protein [Propionibacterium acnes HL072PA2]
 gi|314985460|gb|EFT29552.1| OmpA family protein [Propionibacterium acnes HL005PA1]
 gi|314987369|gb|EFT31460.1| OmpA family protein [Propionibacterium acnes HL005PA2]
 gi|314989090|gb|EFT33181.1| OmpA family protein [Propionibacterium acnes HL005PA3]
 gi|315082724|gb|EFT54700.1| OmpA family protein [Propionibacterium acnes HL027PA2]
 gi|315086083|gb|EFT58059.1| OmpA family protein [Propionibacterium acnes HL002PA3]
 gi|315087668|gb|EFT59644.1| OmpA family protein [Propionibacterium acnes HL072PA1]
 gi|315097294|gb|EFT69270.1| OmpA family protein [Propionibacterium acnes HL038PA1]
 gi|315099483|gb|EFT71459.1| OmpA family protein [Propionibacterium acnes HL059PA2]
 gi|315102012|gb|EFT73988.1| OmpA family protein [Propionibacterium acnes HL046PA1]
 gi|315106289|gb|EFT78265.1| OmpA family protein [Propionibacterium acnes HL030PA1]
 gi|327331336|gb|EGE73075.1| putative outer membrane protein A [Propionibacterium acnes
           HL096PA2]
 gi|327333322|gb|EGE75042.1| putative outer membrane protein A [Propionibacterium acnes
           HL096PA3]
 gi|327445201|gb|EGE91855.1| OmpA family protein [Propionibacterium acnes HL013PA2]
 gi|327447284|gb|EGE93938.1| OmpA family protein [Propionibacterium acnes HL043PA1]
 gi|327450270|gb|EGE96924.1| OmpA family protein [Propionibacterium acnes HL043PA2]
 gi|327454535|gb|EGF01190.1| OmpA family protein [Propionibacterium acnes HL087PA3]
 gi|327456606|gb|EGF03261.1| OmpA family protein [Propionibacterium acnes HL083PA2]
 gi|327457118|gb|EGF03773.1| OmpA family protein [Propionibacterium acnes HL092PA1]
 gi|328755590|gb|EGF69206.1| OmpA family protein [Propionibacterium acnes HL087PA1]
 gi|328756916|gb|EGF70532.1| OmpA family protein [Propionibacterium acnes HL025PA2]
 gi|328758401|gb|EGF72017.1| OmpA family protein [Propionibacterium acnes HL020PA1]
 gi|328761148|gb|EGF74692.1| putative outer membrane protein A [Propionibacterium acnes
           HL099PA1]
 gi|332674672|gb|AEE71488.1| putative outer membrane protein A [Propionibacterium acnes 266]
          Length = 368

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|326800605|ref|YP_004318424.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326551369|gb|ADZ79754.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 441

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F    +  LPE+  VL+ I  +LA      I + GHTDA       + N  LS  RA +
Sbjct: 337 LFSTGQATILPESEGVLKFIASILAEDQAAKIQVVGHTDAV---GDDKSNQILSERRAEA 393

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             + L       +   + SG         +      + NRR++ +
Sbjct: 394 VKRALTTRYGIAEISLQTSGKGESEPVADNQTVKGRTRNRRVEFI 438


>gi|315453529|ref|YP_004073799.1| putative flagellar motor protein [Helicobacter felis ATCC 49179]
 gi|315132581|emb|CBY83209.1| putative flagellar motor protein [Helicobacter felis ATCC 49179]
          Length = 253

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           + F P +        +++  +++      S  S      I +G + E T  G ++ +   
Sbjct: 63  DSFQPVIPIPPAPGGRQEDTIEERESTQQSNPSQTTIKKIGEGSVLEQTDQGSVLKL--- 119

Query: 232 RNTPMF-DKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPF--RNIARDNWR 286
            ++ +F +             + +I  ++        I++RG+TD +P       +D++ 
Sbjct: 120 PSSLIFTEPYGDTINATMQEYIGRIASIIRALPSQVQINVRGYTDNTPIPAHIPFKDHYA 179

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           L+  RA    + L+  G++  ++   + +  +   + +D       N R++I 
Sbjct: 180 LAASRASKVMRELIADGINPQKL-SFTSYGANNPIVPNDSIENRMRNNRVEIF 231



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KK   ++        W + YADF+++L+A F+ ++ I+  +    KA+++ F     +  
Sbjct: 3   KKAKKVECPA--GERWAVPYADFLSLLLALFIALYAISVVNKAKVKALKKEFLKI-FDYA 59

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       P      + D   +   T+ S   +       +  
Sbjct: 60  PIPDSFQPVIPIPPAPGGRQEDTIEERESTQQSNPSQTTIKKIGEGS 106


>gi|262194690|ref|YP_003265899.1| cysteine-rich repeat protein [Haliangium ochraceum DSM 14365]
 gi|262078037|gb|ACY14006.1| cysteine-rich repeat protein [Haliangium ochraceum DSM 14365]
          Length = 1793

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 231  QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
            Q    +F+ +S +   E+   L  +   L  +    + I GHT +      AR N RLS 
Sbjct: 1677 QVGKILFEFNSGVIKEESFPELDSVVRKLQSNPAVHLLIEGHTSSE---GSARYNRRLSG 1733

Query: 290  DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSA--NRRIDILVEDRQ 342
             RA S  + L++ GV  +R++   G    +L I   D   +   NRR++  +   +
Sbjct: 1734 VRAASVRKYLVEHGVEANRLAS-KGVGEAQLLIAPDDTEEARETNRRVEFTITRGR 1788



 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 226  ISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
            + I D      ++ +S+     +  +L + +  +L    +  + ++GHT           
Sbjct: 1552 LEIGDDFKIA-YELNSANLQAASKEMLERDVLWILRAHPQIRVEVQGHTSGE---GKLAY 1607

Query: 284  NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVED 340
            N  LS  RA S    L++ G+  +R+S + G       +    S+     NRRI+  ++ 
Sbjct: 1608 NMELSQRRAQSVVDFLVEHGIEGERLSAV-GHGPKVPLVTPENSEADRERNRRIEFSIQP 1666

Query: 341  RQ 342
            R+
Sbjct: 1667 RR 1668


>gi|15606304|ref|NP_213683.1| flagellar motor protein MotB-like [Aquifex aeolicus VF5]
 gi|2983508|gb|AAC07085.1| flagellar motor protein MotB-like [Aquifex aeolicus VF5]
          Length = 224

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 25/175 (14%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
             +N  +PP++  K  A+K KKR       IS  L                    I + +
Sbjct: 59  PPKNSVVPPITHPKDYAVKIKKR-------ISKVLPPWAYQ-------VVVAEEYIKLRL 104

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHT-DASPFRNIARDN 284
            D      F+        +    L++I  +L   ++ IS   + GH       +N    N
Sbjct: 105 FD---RIFFENGDYKLTEKGRKTLEEIAPLLIALSDEISSIRVEGHVGPTVEIKNPIIRN 161

Query: 285 -WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            W L+  RA    + L   GV  D++  +S +   R         +   N R++I
Sbjct: 162 KWELAGRRATEVIRYLENRGVPHDKLVAVS-YGDKRPLYRWRQSVLIERNNRVEI 215



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K   +       +W   ++D M++L+ FF++++ ++  +    +    YF    +     
Sbjct: 4   KKKEECPKP--PAWLTSFSDLMSLLLTFFILLYAMSTLEIPALEKFLSYFRKNPELYPPK 61

Query: 80  SKGIFDEQNPPERSSQNKIDLS 101
           +  +    +P + + + K  +S
Sbjct: 62  NSVVPPITHPKDYAVKIKKRIS 83


>gi|254227754|ref|ZP_04921185.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262395797|ref|YP_003287650.1| outer membrane protein A precursor [Vibrio sp. Ex25]
 gi|151939796|gb|EDN58623.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262339391|gb|ACY53185.1| outer membrane protein A precursor [Vibrio sp. Ex25]
          Length = 330

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPATYNQKLS 267

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA S    L  +G+  DR++ + G         +        NRR++++V
Sbjct: 268 ERRAQSVADYLTAAGIDSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318


>gi|189464066|ref|ZP_03012851.1| hypothetical protein BACINT_00401 [Bacteroides intestinalis DSM
           17393]
 gi|198275155|ref|ZP_03207686.1| hypothetical protein BACPLE_01313 [Bacteroides plebeius DSM 17135]
 gi|298482396|ref|ZP_07000582.1| outer membrane protein [Bacteroides sp. D22]
 gi|189438400|gb|EDV07385.1| hypothetical protein BACINT_00401 [Bacteroides intestinalis DSM
           17393]
 gi|198271975|gb|EDY96245.1| hypothetical protein BACPLE_01313 [Bacteroides plebeius DSM 17135]
 gi|298271375|gb|EFI12950.1| outer membrane protein [Bacteroides sp. D22]
          Length = 213

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            + +D EK + +  + +           + +++R + + +KI +  + L A + +  +  
Sbjct: 30  AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
              + G        ++  +F   S     E   +L  +  +++      I I GHTD   
Sbjct: 89  YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIISEIPNTKIKIIGHTDNI- 147

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335
                + N  LS +RA +    L  +G+  + I++   G++       S+   + NRR++
Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205

Query: 336 ILVEDRQ 342
           I + + +
Sbjct: 206 IFITNDE 212


>gi|99082187|ref|YP_614341.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99038467|gb|ABF65079.1| OmpA family protein [Ruegeria sp. TM1040]
          Length = 207

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    E   VL    + +         + GHTDA         N RL L RA +A
Sbjct: 66  FDFDSARLDGEARRVLDTQAKWIRQFPEVRFRVYGHTDAV---GSQTYNKRLGLRRARAA 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  ++ F   +  I +D     NRR
Sbjct: 123 VNYLVSRGISRSRLEAVASFGETQPLIVTDQRERRNRR 160


>gi|221209294|ref|ZP_03582275.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221169982|gb|EEE02448.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 220

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  +      +F    +   P     L K+       +   +S+ G+TD+         N
Sbjct: 107 VEHVSLAGDALFASGLATLTPAARASLDKLLNAYGDRSYTQVSVTGYTDSV---GSDASN 163

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             LS  RA +    L + G++  R   ++G          A+    + NRR++I ++ 
Sbjct: 164 LALSKRRAEAVAAYLQQRGLNA-RTLTVTGRGSADPIATNATAEGRATNRRVEISLQR 220


>gi|33596991|ref|NP_884634.1| putative lipoprotein [Bordetella parapertussis 12822]
 gi|33566442|emb|CAE37695.1| putative lipoprotein [Bordetella parapertussis]
          Length = 200

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271
           +GV     +  + I+++      +FD   +  L      LQ I +++   +T +++I GH
Sbjct: 70  EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLQDIAKLIKSPATGIVAIEGH 126

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------- 324
           TD+   +     N  LSL RA +  Q L   GV   ++  + G    R    +       
Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPNQLANGAD 182

Query: 325 DP-MNSANRRIDILVEDR 341
           +P   + NRR++ ++  R
Sbjct: 183 NPQGRAQNRRVEFVLPHR 200


>gi|296282963|ref|ZP_06860961.1| outer membrane protein [Citromicrobium bathyomarinum JL354]
          Length = 214

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L  +    +  L       GV  E       I ++   +   F  +S+   P     L  
Sbjct: 58  LGDQFDDQIRELDEQTAGSGVDVEEIGDQDAI-LVRLPDGVTFATNSANINPSFQRTLDT 116

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           + + +       I + G TD +        N +LS  RA +    L+  GVS  RI    
Sbjct: 117 VAQSMIRYPNSLIDVYGFTDTT---GSPSYNQQLSEQRAQAVANYLVSQGVSRARI-ATR 172

Query: 314 GFAHH----RLKIASDPMNSANRRIDILVED 340
           G+       R++   +     NRR++I +  
Sbjct: 173 GYGEDPQYLRVRTGDNVNEPLNRRVEIKIVP 203


>gi|260911422|ref|ZP_05918013.1| lipoprotein PG3 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634469|gb|EEX52568.1| lipoprotein PG3 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 225

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A+ +    + E T   G+    +   +  +F  + ++    +   L K  +V
Sbjct: 70  MDKVAKRTAEQVKSAKVEEVTDANGLKAVKVTFDSGILFATNKAVLSQSSKNELAKFSQV 129

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  + +  + I GHTD +    I   N  LS  RA S    L   GV   +  K+ G   
Sbjct: 130 LKENRDCHVDIYGHTDNTGNDGI---NIPLSNSRAQSVVNYLSNCGVPRGQFQKVEGKGS 186

Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343
                ++   +    NRR+++ +   + 
Sbjct: 187 SEPVASNASASGRQQNRRVEVYLYASKA 214


>gi|314916069|gb|EFS79900.1| OmpA family protein [Propionibacterium acnes HL005PA4]
          Length = 368

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|294782148|ref|ZP_06747474.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA]
 gi|294480789|gb|EFG28564.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA]
          Length = 396

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 228 IIDQRNTPMFDKSS--SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           +I+  +  +FD         PE   VL+ +  VL         I GHTD+         N
Sbjct: 283 LINLDSEVLFDVDKYDVRVHPEAEEVLKNLAIVLKEMDVKNFEIDGHTDSD---GSDEYN 339

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             LS  RA S    L+  GV+ +      G+   +   ++D       NRR++I++
Sbjct: 340 QVLSEKRANSVKNFLVSQGVTAE--ITTKGYGESKPVASNDTAEGKQKNRRVEIII 393


>gi|24212756|ref|NP_710237.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24193397|gb|AAN47255.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
          Length = 687

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 18/274 (6%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
           F   L T      +  +P     ++ +DL  +  I KN    +       +  +      
Sbjct: 416 FATTLQTGKVYKIEISSPGFHPQEDILDLRGN--IGKNRKVYRTYVLLPIQVEEGKTEET 473

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                 +  +    +L              D + ++    N     L ++        K+
Sbjct: 474 KIEQPIENQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKK 533

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN-------TPMFDKSSSI 243
           L D   ++ +T S  ++++I   +    ++ G + I +  + +          F+ + + 
Sbjct: 534 LPDNDFELFATASKYISESI-NIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTK 592

Query: 244 PLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              E   +L  + G +L ++++ I I GHTD     +    N RLS  RA + Y+ L+  
Sbjct: 593 ITEENKKLLDPLVGYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRARNVYEYLLSK 649

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           G+ E R+ +I  + + +    ++     + NRR+
Sbjct: 650 GIPEKRM-RIRAYWYSQPDADNETETGRAKNRRV 682


>gi|332293158|ref|YP_004431767.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171244|gb|AEE20499.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 236

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           E   +          +    ++   A++I   L G            E    GI+++  D
Sbjct: 62  ELGAVIGGVVGGGAGVLIGNKMDKQAQQIEQELPGA---------TVERIDDGIVVT-FD 111

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           + +   FD +       +  +L K+  ++    +  + + GHTD+        +N  LS 
Sbjct: 112 ENSGVYFDTAKYNVNTASQTLLNKLSNIMKEYNQTNVVVAGHTDSV---GSDTNNMTLSQ 168

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +RA +    ++ +G+S  R + +  +   +   ++D     + NRR+ + +   +
Sbjct: 169 NRANAVTNYMVGTGLSAGRFTTVW-YGETQPAASNDTAEGRAQNRRVQLAIVPNE 222


>gi|317011033|gb|ADU84780.1| flagellar motor protein MotB [Helicobacter pylori SouthAfrica7]
          Length = 257

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       ++ +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSSLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV 
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLAKTRFKSHYELAANRAYRVMKVLMQYGVD 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVLVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|76809785|ref|YP_332623.1| ompA family protein [Burkholderia pseudomallei 1710b]
 gi|76579238|gb|ABA48713.1| ompA family protein [Burkholderia pseudomallei 1710b]
          Length = 316

 Score = 75.7 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 209 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 265

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 266 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 314


>gi|58581150|ref|YP_200166.1| OmpA family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623073|ref|YP_450445.1| OmpA family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58425744|gb|AAW74781.1| OmpA family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367013|dbj|BAE68171.1| OmpA family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 241

 Score = 75.7 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   PE    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|120435967|ref|YP_861653.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578117|emb|CAL66586.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 235

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   AK+I   + G            E    GI ++  D+ +   FD        ++ 
Sbjct: 77  NKMDKQAKQIEEEIPGA---------EVERVGEGINVT-FDESSGVYFDTEKYNINAKSQ 126

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+ ++        + + GHTD +        N  LS +RA +    L+ +G+   R
Sbjct: 127 TTLNKLADIFKEYPQSNVLVEGHTDDT---GSDSYNLTLSKNRAQAVTGYLVDNGIDRGR 183

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            +    +   + K  +      S NRR+++ +
Sbjct: 184 FT-TKWYGESQPKYDNTTADGRSKNRRVELAI 214


>gi|146298460|ref|YP_001193051.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146152878|gb|ABQ03732.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 487

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           F+   +       ET   L  I E+L +      SI GHTD +     A+ N +LS DRA
Sbjct: 375 FNSGKATFKTGDKETPARLDAIKEILKNYPNAKFSIEGHTDNT---GSAKINDKLSQDRA 431

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            +    L++ GV+ + +    GF   +   ++      + NRR +I
Sbjct: 432 NAVLNALVERGVNPENLEA-KGFGSSQPVASNKTAAGKAQNRRTEI 476


>gi|4580966|gb|AAD24553.1|AF117961_1 OprF [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 325

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL    GV   R+  + G+   R     A++   + NRR++
Sbjct: 276 KQVLTSQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 317


>gi|332521405|ref|ZP_08397859.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042804|gb|EGI79003.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 646

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 16/145 (11%)

Query: 209 DNIVKGVLFETTRTGILIS--IIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           D     V  E T+  + ++  I+D     N   FD   S   P+    L+ I  V+    
Sbjct: 501 DIKTSEVNAEETQVDLFLTPLIVDSEIVINPIFFDYDKSNIRPDAAYELENIVVVMREHP 560

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             VI I  HTD+   R   + N +LS  RA S    L   G+++DRI    G+   +L  
Sbjct: 561 NMVIKIESHTDS---RGRDKYNEKLSDRRAKSTRDYLFSRGIAKDRIESAIGYGESQLLN 617

Query: 323 A-------SDPMNSANRRIDILVED 340
                   S+  +  NRR   ++  
Sbjct: 618 KCSNGVKCSEEEHQKNRRSKFIITS 642


>gi|313675126|ref|YP_004053122.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941824|gb|ADR21014.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 699

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +SS     +   L ++ +++       I I  HTD     + A  N RLS +RA S 
Sbjct: 590 FESNSSALFESSFEELDRVIKLMKSYPSMKIEIAAHTDD--VGSAAY-NTRLSQERANSV 646

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
              +  + ++E R+    G+   +  +A+D     + NRR+++ + D Q
Sbjct: 647 ISYITGNSIAEGRLIS-KGYGESKPVVANDSEENRAKNRRVELKILDIQ 694


>gi|332673379|gb|AEE70196.1| flagellar motor protein MotB [Helicobacter pylori 83]
          Length = 255

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|297564278|ref|YP_003683251.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848727|gb|ADH70745.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 534

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 21/189 (11%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +  ++   + +         PP S E +    R+     +A +    +   V   I    
Sbjct: 181 EEERADPQDPNGADHLTPDDPPPSGENLTFANRRPDADAVADE--GWVQSFVDSEIAS-- 236

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGH 271
              TTR G    II   +  MF+   S    E   V+++    LA + +    VI++ GH
Sbjct: 237 ---TTRDGDR-EIISLHSDVMFEFDRSDLTSEAEDVVRRAATSLARNVDPDEPVITVIGH 292

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDP 326
           TD+    +   DN  LS+ RA S   +L +  +  D   ++ G   H           D 
Sbjct: 293 TDSI-GDDAYNDN--LSVQRAESVRDLLAEE-LGTDYTLEVEGRGEHEPIAREGGPDDDE 348

Query: 327 MNSANRRID 335
             + NRR++
Sbjct: 349 ARARNRRVE 357


>gi|226951234|ref|ZP_03821698.1| OmpA/MotB domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|226838028|gb|EEH70411.1| OmpA/MotB domain-containing protein [Acinetobacter sp. ATCC 27244]
          Length = 213

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +  KK+   + G        GV       G +  I+    +  FD + S   P     
Sbjct: 73  LDNKEKKLRQQMQGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 123

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ +VL   +   I + G+TD +        N  LS  RA S    L   G++ +RI 
Sbjct: 124 LNKVAQVLGEDNQSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGIASNRID 180

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +        NRR++I +  +Q
Sbjct: 181 A-QGYGSSNPIADNSTAAGREQNRRVEISIYAKQ 213


>gi|224369820|ref|YP_002603984.1| OmpA2 [Desulfobacterium autotrophicum HRM2]
 gi|223692537|gb|ACN15820.1| OmpA2 [Desulfobacterium autotrophicum HRM2]
          Length = 503

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + +   P +   L  +  +L  +    I ++GHTD          N +LSL R+ +
Sbjct: 400 LFDYNKADIKPTSFDELDNVAMILKKNPALKIDLQGHTDNI---GSKNFNMKLSLKRSAA 456

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
               L+  GV  +R+ K  GF   R    +      + NRR+++L
Sbjct: 457 VKTYLVSKGVPSERL-KTEGFGFSRPVDTNKTKEGRAKNRRVELL 500


>gi|86130189|ref|ZP_01048789.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818864|gb|EAQ40023.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 236

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 19/176 (10%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           E   +          +    ++   A++I   + G            E    GI+++  D
Sbjct: 62  ELGAVIGGVVGGGAGVLIGNKMDKQAQQIEQEIPGA---------SVERVDDGIVVT-FD 111

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLS 288
           + +   FD +       +  +L K+  ++     T VI + GHTD+         N  LS
Sbjct: 112 ENSGVYFDTAKYNINANSQTMLNKLSNIMKEYNQTNVI-VAGHTDSV---GSDASNLTLS 167

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +RA +    ++ +G+S  R + +  +   +   ++D     + NRR+ + +   +
Sbjct: 168 QNRANAVTNYMIGTGLSAGRFTTVW-YGEAQPAASNDTAEGRAQNRRVQLAIVPNE 222


>gi|269959951|ref|ZP_06174328.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835250|gb|EEZ89332.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 326

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 207 EEYGTGTFEFDSATLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 263

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA S    L+ +G+  DR + + G         +        NRR++++V
Sbjct: 264 ERRAQSVADYLIAAGIDADRFT-VKGMGEENPVADNSTHEGREKNRRVEVVV 314


>gi|166712665|ref|ZP_02243872.1| OmpA family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 241

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   PE    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|304398041|ref|ZP_07379916.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304354327|gb|EFM18699.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 219

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRNGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVSMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++  R +   N RLS  RA S    L+  GV+ DR+ +  G       
Sbjct: 142 PKTAVNVVGYTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRL-RTQGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 198 ATNSTEAGKAQNRRVEITL 216


>gi|197295086|ref|YP_002153627.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
 gi|195944565|emb|CAR57169.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++  P     L K+   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTPAATATLDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D  +  +G        ++D     + NRR++I ++
Sbjct: 172 DAVAGYLREHGLKADSFAA-NGHGEANPAASNDTVEGRARNRRVEISLQ 219


>gi|171315988|ref|ZP_02905216.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171098892|gb|EDT43683.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 592

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++   +  +FD   +      T  ++  +  + AH  + + + G+ D          N +
Sbjct: 467 VVTLDSMSLFDSGKARLRTGTTRAMVDALELIKAHPDKRVLVAGYADDQ---GRPDRNLK 523

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS+DRA +    L+++ G+   R   I G+   R    +      + NRR++I +  
Sbjct: 524 LSIDRASAVRDWLVEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 579


>gi|256028784|ref|ZP_05442618.1| Outer membrane protein [Fusobacterium sp. D11]
          Length = 191

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   SI   +   +L+ I E +  +   I+I GHTD+    +    N+ 
Sbjct: 62  TIVLDERSLNFDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDS--IGSNQY-NFG 118

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           LS  RA +    L++ G++EDRI  I      +    +      + NRR++  +  R+ 
Sbjct: 119 LSRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQREA 177


>gi|189347522|ref|YP_001944051.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
 gi|189341669|gb|ACD91072.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
          Length = 349

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P +   L +I ++L       + + GHTD          N  LS  RA + 
Sbjct: 247 FDTNKADIKPASKPALGEIAKLLKKQPAMKLHVVGHTDN---AGGYEFNVSLSKRRADAV 303

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             VL K  G++  R++  +G A+     ++  +   + NRR++++
Sbjct: 304 VGVLQKEYGIAPGRLTA-NGVAYLAPVASNAAEAGRAKNRRVELV 347


>gi|153949077|ref|YP_001403078.1| outer membrane lipoprotein [Yersinia pseudotuberculosis IP 31758]
 gi|152960572|gb|ABS48033.1| OmpA family protein [Yersinia pseudotuberculosis IP 31758]
          Length = 219

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMSGTGVSVTRQGENIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA +    L+  GV+ +RI +  G       
Sbjct: 142 DKTAVNVTGYTDST---GARAHNIVLSQQRADNVASALIVQGVAANRI-RTYGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|299771293|ref|YP_003733319.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter sp. DR1]
 gi|298701381|gb|ADI91946.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter sp. DR1]
          Length = 217

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDQKEKKLRQQMAGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYST 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GVS  RI 
Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVRSYLASQGVSASRID 184

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              GF         ++      NRR++I +  +Q
Sbjct: 185 A-QGFGSSNPIADNSTATGREQNRRVEISIYAKQ 217


>gi|256819127|ref|YP_003140406.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256580710|gb|ACU91845.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 230

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   AKKI   + G            +    GI+++  +      FD +      ++ 
Sbjct: 75  NQMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINNKSR 125

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  +L    +  + + GHTD          N  LS  RA +        G+   R
Sbjct: 126 QTLDKLSAILKEYPDTNVIVAGHTDNV---GKDEYNLGLSQRRAQAVTNYFKSKGLVGSR 182

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +    +       +++     + NRR+++++   +
Sbjct: 183 FT-TKWYGERNPVASNETADGRAKNRRVNVVIVPNE 217


>gi|188575664|ref|YP_001912593.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520116|gb|ACD58061.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 241

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   PE    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|289766688|ref|ZP_06526066.1| outer membrane protein [Fusobacterium sp. D11]
 gi|289718243|gb|EFD82255.1| outer membrane protein [Fusobacterium sp. D11]
          Length = 180

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   SI   +   +L+ I E +  +   I+I GHTD+    +    N+ 
Sbjct: 51  TIVLDERSLNFDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDS--IGSNQY-NFG 107

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           LS  RA +    L++ G++EDRI  I      +    +      + NRR++  +  R+ 
Sbjct: 108 LSRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQREA 166


>gi|301059327|ref|ZP_07200254.1| OmpA family protein [delta proteobacterium NaphS2]
 gi|300446556|gb|EFK10394.1| OmpA family protein [delta proteobacterium NaphS2]
          Length = 434

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP----MFDKSSSIPLP 246
           R Q +   I S         ++K +        +   I+          +FD + +   P
Sbjct: 283 RAQPMGITIESRQCHRGKQALIKNIRIAKGAKNLYDRIMTDGKFVTRGILFDVNKATLKP 342

Query: 247 ETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            ++ V+ +I ++  AH    + I GHTD+         N +LS +RA +    L+ +GV 
Sbjct: 343 ASMGVINEIAKMMRAHEDINLRIEGHTDSD---GEKTFNQKLSEERAEAVKNALVDAGVD 399

Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             R+ K  GF   +    +      + NRR++ +
Sbjct: 400 SSRL-KTKGFGESKPVSDNTTAEGKANNRRVEFV 432


>gi|218778894|ref|YP_002430212.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760278|gb|ACL02744.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 215

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    P     L  +  VL  +    +SI GH  ++   N A +N+ LSL RA + 
Sbjct: 111 FDLNSMELNPAARSALDAVSSVLHVNKAVKLSIEGHACSA-GDNAAYNNY-LSLQRAQAV 168

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
              L+  GV   R+  ++G+  ++    ++       NRR++I+
Sbjct: 169 KDYLISRGVDGARM-SVTGYGANQPVKDNNSRAHRIQNRRVEIV 211


>gi|300770792|ref|ZP_07080670.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762349|gb|EFK59167.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 438

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263
            +    +V+ ++           ++D+    + FD   S     +   L ++  +L    
Sbjct: 309 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 364

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + GHTD +      + N RLS +RA +    L   G +  RI   +G+  ++   +
Sbjct: 365 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 420

Query: 324 SDPMNSA--NRRIDILV 338
           +        NRR++  +
Sbjct: 421 NATAEGRQQNRRVEFTL 437


>gi|300770791|ref|ZP_07080669.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762348|gb|EFK59166.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 440

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263
            +    +V+ ++           ++D+    + FD   S     +   L ++  +L    
Sbjct: 311 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 366

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + GHTD +      + N RLS +RA +    L   G +  RI   +G+  ++   +
Sbjct: 367 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 422

Query: 324 SDPMNSA--NRRIDILV 338
           +        NRR++  +
Sbjct: 423 NATAEGRQQNRRVEFTL 439


>gi|227538391|ref|ZP_03968440.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241773|gb|EEI91788.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 440

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263
            +    +V+ ++           ++D+    + FD   S     +   L ++  +L    
Sbjct: 311 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 366

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + GHTD +      + N RLS +RA +    L   G +  RI   +G+  ++   +
Sbjct: 367 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 422

Query: 324 SDPMNSA--NRRIDILV 338
           +        NRR++  +
Sbjct: 423 NATAEGRQQNRRVEFTL 439


>gi|322835249|ref|YP_004215275.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321170450|gb|ADW76148.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 558

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD       P ++ +L   + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 437 SLFDTGKYELKPGSLKMLVNTLVDIKAKPGWLIVVAGHTD---ITGDAKANQTLSLKRAG 493

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           S    +L  S VS      + G+   R    +D     +ANRR++I +  +
Sbjct: 494 SLRDWMLSTSDVSPT-CFAVQGYGATRPVATNDTPEGRAANRRVEISLVPQ 543


>gi|149195189|ref|ZP_01872279.1| OmpA domain protein [Caminibacter mediatlanticus TB-2]
 gi|149134622|gb|EDM23108.1| OmpA domain protein [Caminibacter mediatlanticus TB-2]
          Length = 383

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S+   PE +  ++K  E L +       I+G+TD    R  A  N  LS  RA + 
Sbjct: 281 FDTNSAKIKPEYMPKIEKFAEFLKNHPDVKAEIQGYTDN---RGSATYNMILSEKRAKAV 337

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           Y+ L+K GV++D+I+ + G+       ++D     + NRR+
Sbjct: 338 YEALLKLGVNKDQITFV-GYGEANPIASNDTPEGRAKNRRV 377


>gi|161520025|ref|YP_001583452.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189353793|ref|YP_001949420.1| OmpA/MotB family outer membrane protein [Burkholderia multivorans
           ATCC 17616]
 gi|160344075|gb|ABX17160.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189337815|dbj|BAG46884.1| OmpA/MotB family outer membrane protein [Burkholderia multivorans
           ATCC 17616]
          Length = 220

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  +      +F    +   P     L K+    A  +   +S+ G+TD+         N
Sbjct: 107 VEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSV---GSDASN 163

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L + G++  R   ++G        ++      + NRR++I ++ 
Sbjct: 164 LALSKRRAEAVAAYLQQRGLNA-RTLTVTGRGSADPIASNATAEGRATNRRVEISLQR 220


>gi|114764072|ref|ZP_01443311.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114543430|gb|EAU46445.1| OmpA domain protein [Roseovarius sp. HTCC2601]
          Length = 221

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +   I+      +F   S     +    ++ +G  L    
Sbjct: 87  EAELRQQLGNDVGIRNTGDRL---IVTMPQDILFGFDSDTLRNDLQADIRTVGSSLLQYP 143

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + + GHTD+      A  N  LS  RA S   VL+ SGV   RI  + G        
Sbjct: 144 NTSVQVVGHTDSD---GDAGYNQGLSQRRAQSVANVLVSSGVPSSRI-SVIGRGEAAPVA 199

Query: 323 AS--DPMNSANRRIDILVED 340
           ++      + NRR++I++  
Sbjct: 200 SNLTPEGKAQNRRVEIVILP 219


>gi|189423758|ref|YP_001950935.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189420017|gb|ACD94415.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 443

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI   +    L+ +G+ L         I GHTD        + N  LS  RA + 
Sbjct: 306 FDTGKSIIKKQYYDELKVVGDGLNEQKNLKGVIEGHTDNV---GSDKSNLALSQRRANAV 362

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              ++K+   + +     G+   +    +        NRRI+
Sbjct: 363 RDYIVKNFKIDRKRLAAKGYGESKPIADNATAEGREQNRRIE 404


>gi|224437727|ref|ZP_03658674.1| OmpA family protein [Helicobacter cinaedi CCUG 18818]
          Length = 147

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270
           ++G     +R G  I I++      F   S     +   VL K  +VL    + I ++ G
Sbjct: 12  LQGTGVSVSREGDGI-ILNMPGDITFKSGSDDLSSDFYKVLNK--KVLNKYDKTIVTVVG 68

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD +      + N  LS  RA S    L    V  +R   + G        ++      
Sbjct: 69  FTDNT---GSDKTNLALSKKRAESVAAYLQNQKVKTERFV-VDGLGESEPIASNKTAEGR 124

Query: 329 SANRRIDILVEDRQ 342
           + NRR++I +   Q
Sbjct: 125 AKNRRVEISLTAIQ 138


>gi|315082132|gb|EFT54108.1| OmpA family protein [Propionibacterium acnes HL078PA1]
          Length = 368

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASP 276
            T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+  
Sbjct: 249 VTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS-- 303

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRR 333
               A  N  LS  RA S  +VL         I+ ++ G        ++D       NRR
Sbjct: 304 -SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRR 360

Query: 334 IDILVED 340
           + I V++
Sbjct: 361 VTITVKE 367


>gi|244538688|dbj|BAH82838.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K         K++++    K+I  +        ++  +  E T        I       F
Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D+ S    PE    +Q++G+VL  + +  +I  GHTD++        N +LSL+RA +  
Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           + L KSGV++++I    G+   + K ++D     + NRR++
Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|154244938|ref|YP_001415896.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154159023|gb|ABS66239.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2]
          Length = 296

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 51/201 (25%)

Query: 184 LAMKRKKRLQDLAKKISSTL-----SGLVADNIVKGVLFETTRTGILISIIDQ------- 231
           +A +  ++L  ++ ++ S +     S  V   +++ +  +    G+ + I +Q       
Sbjct: 57  VAREVARKLDAMSGQVRSAIATVDASQQVRRQLLQDIESQLRAEGLNVQIDEQNGVLRLT 116

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------------------TEV------ 265
            +   F+ S S         + KI  VL                                
Sbjct: 117 EDAVRFEPSRSDLAGRARSNVDKIARVLDRVLPAYTACHVAEGAAGGTACQPGAGPSLET 176

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRISKISGFAH 317
           + I GHTD++        NW+LS +RA + Y+ ++           +  + I  +SG+A 
Sbjct: 177 VFIEGHTDST---GEDGTNWQLSTERAVNTYRAIVAGAPRLRGLRNLRGEEILSVSGYAS 233

Query: 318 HRLKIASDPMN--SANRRIDI 336
            R    ++     + NRRID+
Sbjct: 234 TRPIDPTESREAWARNRRIDL 254


>gi|289670151|ref|ZP_06491226.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 241

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   PE    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|172062678|ref|YP_001810329.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171995195|gb|ACB66113.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 587

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++   +  +FD   +      T  ++  +  + AHS + + + G+ D          N +
Sbjct: 462 VVTLDSMSLFDSGKATLRTGTTRAMVDALELIKAHSGKRVLVAGYADDQ---GRPDRNLK 518

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS+DRA +    L+++ G+   R   I G+   R    +      + NRR++I +  
Sbjct: 519 LSIDRASAVRDWLVEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 574


>gi|159025742|emb|CAO02045.1| outer membrane protein A [Bordetella hinzii]
 gi|159025744|emb|CAO02046.1| outer membrane protein A [Bordetella hinzii]
 gi|159025746|emb|CAO02047.1| outer membrane protein A [Bordetella hinzii]
          Length = 177

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 70  FFDFDKSVLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +      +    + NRR++I +V  R+
Sbjct: 127 VKAYLVSKGIDPNRIY-TEGKGELQPIATNKTAEGRARNRRVEIEIVGSRR 176


>gi|149276320|ref|ZP_01882464.1| OmpA/MotB [Pedobacter sp. BAL39]
 gi|149232840|gb|EDM38215.1| OmpA/MotB [Pedobacter sp. BAL39]
          Length = 448

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 103/335 (30%), Gaps = 44/335 (13%)

Query: 39  DFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKI 98
           D+   L A F     I     + KK I   +   G   M++   +  E   P  ++    
Sbjct: 122 DWSAALSANF----TIANLSLNQKKNILSPYATIGAGYMSSGATLRTEAGAPAIANATNQ 177

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
               +          K+G +N          N     N        N     +  G ++ 
Sbjct: 178 GF-HENWFVPVGAGFKLGISNGVNIDLGYNVNFVKGKNFDGVSGAANDRFSYAHAGVEIA 236

Query: 159 KSTDLEKSINK-------EENYFLPPLSKEKILAMKRKKRLQDL---AKKISSTLSGLVA 208
                   +          E          + L+ + + RL+D    AK +       VA
Sbjct: 237 LGKKGAPQLQNFSPIAALREQSAAESAELRRALSTEEQNRLRDQEQYAKDMGDDDGDGVA 296

Query: 209 DNI------------------VKGVLFETTRTGILIS----IIDQRNTPM-FDKSSSIPL 245
           +                    +K      T   I+      ++D+    + FD   +   
Sbjct: 297 NKFDKCPGTPANTQVDGAGCPLKTPRPIVTEKVIVTEADRRVVDEAIKNLEFDLGKATIR 356

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
             +   L ++  +L      + + GHTD +        N RLS +RA S    L+  GV+
Sbjct: 357 STSFNTLNRVAALLVEKNFSLKLAGHTDNT---GSMALNLRLSKERAESVKAYLVSQGVN 413

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             R+   +G+  ++    +        NRR++  +
Sbjct: 414 ASRVEA-TGYGPNQPIATNKTAAGRQQNRRVEFTL 447


>gi|213964216|ref|ZP_03392450.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sputigena
           Capno]
 gi|213953135|gb|EEB64483.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sputigena
           Capno]
          Length = 919

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 22/202 (10%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
              T +E  I + E   + P+ +  ++   +     +    +       + DN +  V  
Sbjct: 722 ASGTPIEAQIRQGEGEEMMPVDEVVVIEEGKLNADGNFEYNVGDLFQLSLFDNTMLEVGK 781

Query: 218 ETTRTGILISIIDQR--------------NTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
            ++   ++  I D+               +   F   S      +   L+ I  +L    
Sbjct: 782 NSSEAHLVKLIEDKSLTTPEQFKDNWITLDRTYFKTGSDELTEGSEQQLKNIVAILKAYP 841

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  I + G+TD +     A  N +LS  RA S    L+  G ++ ++S   G+       
Sbjct: 842 KAAIRLGGYTDNT---GSAEGNLKLSERRANSVLNKLVALGANKAQLSA-QGYGQEHPVC 897

Query: 323 ASDPMN---SANRRIDILVEDR 341
            ++  +   + NRRIDI +  +
Sbjct: 898 PANDTDECKAKNRRIDIRLTAK 919


>gi|188527339|ref|YP_001910026.1| flagellar motor protein MotB [Helicobacter pylori Shi470]
 gi|188143579|gb|ACD47996.1| flagellar motor protein MotB [Helicobacter pylori Shi470]
          Length = 255

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|78047093|ref|YP_363268.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294626580|ref|ZP_06705178.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665669|ref|ZP_06730945.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|78035523|emb|CAJ23169.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292599147|gb|EFF43286.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604564|gb|EFF47939.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 241

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERASAVAQYLTAQGVQRERMETMGAGKRYPIADNTTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|124005217|ref|ZP_01690059.1| outer membrane protein [Microscilla marina ATCC 23134]
 gi|123989469|gb|EAY29030.1| outer membrane protein [Microscilla marina ATCC 23134]
          Length = 687

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 12/189 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
              K+    +S  K   Y +    ++K   +   K    +   I         + +    
Sbjct: 508 STGKNVGRGRSNPKTGEYKVVLPLEQKYALLAEAKGFLSVDTTIDLKGITKYTEIVADLY 567

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           L      G++     + N   F + S+  LPE+   L ++ + +  +    I + GHT+ 
Sbjct: 568 LVPIESGGLV-----RLNNIFFSRGSARLLPESYPELNRLAKAMKENPTMRIRLEGHTEI 622

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
              +    +   LS  R  S  + L + G+++ R+ K+ GF + R       +   + NR
Sbjct: 623 FGNKKFLMN---LSKQRVKSVQKYLSEKGINDRRV-KLKGFGYKRPLSRKKDEKSRALNR 678

Query: 333 RIDILVEDR 341
           R+++ +  +
Sbjct: 679 RVEVRILSK 687


>gi|308182972|ref|YP_003927099.1| flagellar motor protein MotB [Helicobacter pylori PeCan4]
 gi|308065157|gb|ADO07049.1| flagellar motor protein MotB [Helicobacter pylori PeCan4]
          Length = 255

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|238783060|ref|ZP_04627087.1| Inner membrane lipoprotein yiaD [Yersinia bercovieri ATCC 43970]
 gi|238716061|gb|EEQ08046.1| Inner membrane lipoprotein yiaD [Yersinia bercovieri ATCC 43970]
          Length = 219

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD  SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMNGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G TD+         N  LS  RA S    L+  GV+ +R+ + SG       
Sbjct: 142 DKTAVNVTGFTDS---SGARAHNMTLSQQRADSVGSALIMQGVAANRV-RTSGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|326317618|ref|YP_004235290.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374454|gb|ADX46723.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 188

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   FE T  G  + +       +FD  S     E+   + ++G  LA    + + + 
Sbjct: 62  VLRQYGFEPTDAGWELQMS---GKLLFDFDSVELNAESHDGVLRMGRALADVGIDALRVE 118

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327
           GHTD          N RLSL RA +  +VL ++G+  D I  + G    R  +   S   
Sbjct: 119 GHTDEQ---GARAYNERLSLRRAQAVARVLAEAGLPADHIGTV-GLGASRPVVQGTSAAS 174

Query: 328 NSANRRIDILV 338
              NRR+ I+V
Sbjct: 175 RRENRRVAIIV 185


>gi|256822902|ref|YP_003146865.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256796441|gb|ACV27097.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069]
          Length = 221

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    K++   L+G               R G  I +I       F             V
Sbjct: 80  MDSQEKELREELAGT---------GVGVQRDGEQIHLI-MPGDITFQTDRYAIDSGFYPV 129

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  + +VL       + + G TD+         N  LS  RA S    L +  +  +R+ 
Sbjct: 130 LDSVSKVLYKFKDTNLEVAGFTDSV---GSDSYNQELSEKRANSVASYLRQREIPNNRL- 185

Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVED 340
           ++ G+        ++     S NRR+++ +  
Sbjct: 186 RVVGYGERYPVAPNETEAGRSKNRRVELTITP 217


>gi|222869877|gb|EEF07008.1| predicted protein [Populus trichocarpa]
          Length = 219

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D  +   FD + S        +L +  E L ++    + I GHTD++    I      LS
Sbjct: 81  DIPSDISFDTNRSDIKGNFAPILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LS 137

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           LDRA S    L   GVS  RI    G   H+   ++D     + NRR++I V
Sbjct: 138 LDRANSTRNYLTMRGVSGARI-ATEGRGSHQPVASNDSASGRAMNRRVEIFV 188


>gi|289662994|ref|ZP_06484575.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 241

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   PE    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+ +  +G  +      +D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMDTMGAGKRYPIADNNTDAGRAKN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|156974655|ref|YP_001445562.1| hypothetical protein VIBHAR_02373 [Vibrio harveyi ATCC BAA-1116]
 gi|156526249|gb|ABU71335.1| hypothetical protein VIBHAR_02373 [Vibrio harveyi ATCC BAA-1116]
          Length = 208

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   SS   P  +  +  +   L       I ++G+T           N  LS  RA
Sbjct: 85  RVLFANDSSAIEPVFVNQISDLSNFLKEYPTTSIELQGYTS---ITGTDEYNLALSKRRA 141

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            S  Q L+ +G+S +R+ +I GF    L      +  ++ NRR+   V   +G
Sbjct: 142 ESVRQELINNGISPERL-RIVGFGETNLASQGTDETSHALNRRVTATVVGYKG 193


>gi|78221563|ref|YP_383310.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Geobacter metallireducens GS-15]
 gi|78192818|gb|ABB30585.1| Thrombospondin type 3 repeat:OmpA/MotB [Geobacter metallireducens
           GS-15]
          Length = 447

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE    ++++ + L    +    I GHTD+   +   + N +LS  RA + 
Sbjct: 338 FDFDKANIKPEFRDEIKRVADFLKEYPDATAVIEGHTDS---KGTVKYNQKLSERRAKAV 394

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRI 334
            + L+   G+S  R+S   G+   +     A++     NRR+
Sbjct: 395 MKNLVDEFGISAKRLSA-KGYGETKPVADNATEEGRQKNRRV 435


>gi|85713659|ref|ZP_01044649.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85699563|gb|EAQ37430.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 463

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +   P++I +L ++ E  L   T  I I GHTD       A  N  LS  RA + 
Sbjct: 361 FETGKATLDPDSIGLLDQLTETALRCPTATIEIVGHTDGD---GDASFNQALSERRAQAV 417

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
              ++K+G+  +R  +  G+   +    +D     + NRRID +V
Sbjct: 418 VDFMVKAGLPANRF-RPIGYGSAQPIATNDTDEGKAKNRRIDFIV 461


>gi|238764428|ref|ZP_04625377.1| hypothetical protein ykris0001_27500 [Yersinia kristensenii ATCC
           33638]
 gi|238697344|gb|EEP90112.1| hypothetical protein ykris0001_27500 [Yersinia kristensenii ATCC
           33638]
          Length = 538

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVV 251
           Q L   +   +   +        + + T   + +         +FD       P  T ++
Sbjct: 383 QRLWLALQQAIDTYIPPPPPPTPVEKQTPKTVRL-----DALSLFDTGKYQLKPGSTKML 437

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRIS 310
           +  + ++ A    +I + GHTD       A  N  LSL RA +    +L  S VS     
Sbjct: 438 VSALIDIRAKPGWLIVVAGHTD---ITGDAGANQTLSLKRAEALRDWMLSTSDVSPT-CF 493

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            + G+   R    ++     + NRR++I +  +
Sbjct: 494 AVQGYGATRPIATNESTEGRALNRRVEISLVPQ 526


>gi|242278087|ref|YP_002990216.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120981|gb|ACS78677.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 356

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E +  L +   +L       + + GHTD+         N  LS  RA S 
Sbjct: 254 FGFDKYQITDEMVPALTEAATMLEEFPNLKVLVGGHTDS---SGSEAYNQGLSERRAKSV 310

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              L  +G++  R+  + G+     K  +        NRR++I VED
Sbjct: 311 ADWLAANGIAPKRLE-VKGYGEMNPKYDNKTKEGRKLNRRVEIDVED 356


>gi|149186172|ref|ZP_01864486.1| putative outer membrane lipoprotein [Erythrobacter sp. SD-21]
 gi|148830203|gb|EDL48640.1| putative outer membrane lipoprotein [Erythrobacter sp. SD-21]
          Length = 245

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F ++S+  LP + ++L ++   L   +  +I+I GHT+          N  LS+DRA   
Sbjct: 130 FQEASAALLPASRILLDEVAAALEPCSGAIIAITGHTNK---SGSEAANLALSMDRARVV 186

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            + L++ G+    + +  G           P + ANRRI+  V
Sbjct: 187 REALVRRGIPRSSL-RARGMGSSEPAERLKPEDPANRRIEFSV 228


>gi|21230892|ref|NP_636809.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769109|ref|YP_243871.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992257|ref|YP_001904267.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112502|gb|AAM40733.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574441|gb|AAY49851.1| outer membrane protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734017|emb|CAP52223.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris]
          Length = 241

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 104 NTGIDVQRQGDNITLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +     ++D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERANAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219

Query: 332 RRIDI 336
           RR++I
Sbjct: 220 RRVEI 224


>gi|22127962|ref|NP_671385.1| putative outer membrane lipoprotein [Yersinia pestis KIM 10]
 gi|45443710|ref|NP_995249.1| putative outer membrane lipoprotein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51598197|ref|YP_072388.1| outer membrane lipoprotein [Yersinia pseudotuberculosis IP 32953]
 gi|108808999|ref|YP_652915.1| putative outer membrane lipoprotein [Yersinia pestis Antiqua]
 gi|108813881|ref|YP_649648.1| putative outer membrane lipoprotein [Yersinia pestis Nepal516]
 gi|145597343|ref|YP_001161418.1| putative outer membrane lipoprotein [Yersinia pestis Pestoides F]
 gi|150260986|ref|ZP_01917714.1| putative lipoprotein [Yersinia pestis CA88-4125]
 gi|162420588|ref|YP_001608097.1| putative outer membrane lipoprotein [Yersinia pestis Angola]
 gi|165926066|ref|ZP_02221898.1| OmpA family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936922|ref|ZP_02225488.1| OmpA family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009516|ref|ZP_02230414.1| OmpA family protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213252|ref|ZP_02239287.1| OmpA family protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398489|ref|ZP_02304013.1| OmpA family protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421106|ref|ZP_02312859.1| OmpA family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425514|ref|ZP_02317267.1| OmpA family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467912|ref|ZP_02332616.1| OmpA family protein [Yersinia pestis FV-1]
 gi|170022281|ref|YP_001718786.1| putative outer membrane lipoprotein [Yersinia pseudotuberculosis
           YPIII]
 gi|186897420|ref|YP_001874532.1| putative outer membrane lipoprotein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218931056|ref|YP_002348931.1| putative outer membrane lipoprotein [Yersinia pestis CO92]
 gi|229839783|ref|ZP_04459942.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841867|ref|ZP_04462023.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229896745|ref|ZP_04511909.1| putative lipoprotein [Yersinia pestis Pestoides A]
 gi|229904405|ref|ZP_04519516.1| putative lipoprotein [Yersinia pestis Nepal516]
 gi|270488345|ref|ZP_06205419.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294505605|ref|YP_003569667.1| putative lipoprotein [Yersinia pestis Z176003]
 gi|21961106|gb|AAM87636.1|AE014011_3 putative outer membrane protein [Yersinia pestis KIM 10]
 gi|45438580|gb|AAS64126.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001]
 gi|51591479|emb|CAH23150.1| OmpA-OmpF family porin [Yersinia pseudotuberculosis IP 32953]
 gi|108777529|gb|ABG20048.1| lipoprotein [Yersinia pestis Nepal516]
 gi|108780912|gb|ABG14970.1| putative lipoprotein [Yersinia pestis Antiqua]
 gi|115349667|emb|CAL22647.1| putative lipoprotein [Yersinia pestis CO92]
 gi|145209039|gb|ABP38446.1| lipoprotein [Yersinia pestis Pestoides F]
 gi|149290394|gb|EDM40471.1| putative lipoprotein [Yersinia pestis CA88-4125]
 gi|162353403|gb|ABX87351.1| OmpA family protein [Yersinia pestis Angola]
 gi|165915164|gb|EDR33775.1| OmpA family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921926|gb|EDR39103.1| OmpA family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991438|gb|EDR43739.1| OmpA family protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205550|gb|EDR50030.1| OmpA family protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961235|gb|EDR57256.1| OmpA family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050993|gb|EDR62401.1| OmpA family protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055528|gb|EDR65321.1| OmpA family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169748815|gb|ACA66333.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
 gi|186700446|gb|ACC91075.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229678523|gb|EEO74628.1| putative lipoprotein [Yersinia pestis Nepal516]
 gi|229691206|gb|EEO83259.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696149|gb|EEO86196.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700284|gb|EEO88319.1| putative lipoprotein [Yersinia pestis Pestoides A]
 gi|262363769|gb|ACY60490.1| putative lipoprotein [Yersinia pestis D106004]
 gi|262367705|gb|ACY64262.1| putative lipoprotein [Yersinia pestis D182038]
 gi|270336849|gb|EFA47626.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294356064|gb|ADE66405.1| putative lipoprotein [Yersinia pestis Z176003]
 gi|320017406|gb|ADW00978.1| putative lipoprotein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 219

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        + G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLREKMSGTGVSVTRQGENIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA +    L+  GV+ +RI +  G       
Sbjct: 142 DKTAVNVTGYTDST---GARAHNIVLSQQRADNVASALIVQGVAANRI-RTYGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
            ++      + NRR++I +
Sbjct: 198 ASNSTAAGKAQNRRVEITL 216


>gi|149178718|ref|ZP_01857301.1| hypothetical protein PM8797T_01394 [Planctomyces maris DSM 8797]
 gi|148842416|gb|EDL56796.1| hypothetical protein PM8797T_01394 [Planctomyces maris DSM 8797]
          Length = 242

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYS 294
           F + S+   PE    L  I E+L  +   + +RGH    P    +   D+  LS  RA +
Sbjct: 125 FGRFSAELTPEIKQKLDIIAEILLPTPNRLIVRGHASPEPLPKDSKFLDSQELSFYRAKN 184

Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             + L   G+  +R I    G A  R    +      NRR+D+ + D
Sbjct: 185 VAEYLESKGIEPERLIVSSVGDAEPRTITRNPEEQYLNRRVDVFLID 231



 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFGKNLMTASK 81
           +D P  +  W + Y D M++L+ FF+++  ++    D+ + +A+              + 
Sbjct: 6   EDAPPGVPEWVVTYGDMMSLLLTFFIMLVSMSEIRNDEGSVRAMLDSLRERFGTHQGTAA 65

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
                 +P    S+     S  +  TK   +   G     K  +R+   
Sbjct: 66  VPGKSLDPTSNQSKPASKGSSSDGGTKTGKEKSSGGGGPNKTVERINTG 114


>gi|77747768|ref|NP_636149.2| hypothetical protein XCC0758 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|77761295|ref|YP_244539.2| hypothetical protein XC_3475 [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 403

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           G +I++ D     +FD   +   P+   VL  +   L   +   + +RGHTDA   +   
Sbjct: 286 GYVITLSD---RILFDFDKADIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 339

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334
             N  LS  RA +    L   G ++   +   G+   +    +      +P     NRR+
Sbjct: 340 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 397

Query: 335 DILVED 340
           ++ +  
Sbjct: 398 ELFLRT 403


>gi|33863187|ref|NP_894747.1| outer membrane protein [Prochlorococcus marinus str. MIT 9313]
 gi|33635104|emb|CAE21090.1| Bacterial outer membrane protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 214

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
            ++ E  +  ILI +       +FD   +   P  I  LQ + + +  S+   + I GHT
Sbjct: 84  NIVVEKEKE-ILIELAAD---VLFDFDKANLKPSAIKSLQGVAKRIRESSRGDVRIEGHT 139

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASD 325
           D+   +     N  LS  RA S     +  G   +      G    +  +       A D
Sbjct: 140 DS---KGSNEYNQTLSEKRAISVRDWFVSEGGLSNVQFATKGLGELKPVVSNTTEEGADD 196

Query: 326 P-MNSANRRIDILVED 340
           P     NRR++I+++ 
Sbjct: 197 PIGRQRNRRVEIIIKT 212


>gi|325105158|ref|YP_004274812.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974006|gb|ADY52990.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 593

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   S   P+   +L  +  +L  +    I +  HTD+   R     N RLS  RA SA
Sbjct: 482 YDFDKSDIRPDAARILDNLVNILKQNPSLRIELSSHTDS---RGSDAYNLRLSQKRAESA 538

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
            + L+  G+ + R+    GF   +L          +D  +  NRR ++ V 
Sbjct: 539 VKYLVDRGIDKSRLVA-RGFGETKLLNKCANEVDCTDAEHEVNRRTEVKVL 588


>gi|28897538|ref|NP_797143.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839084|ref|ZP_01991751.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
 gi|260364598|ref|ZP_05777200.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
 gi|260878297|ref|ZP_05890652.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|260898127|ref|ZP_05906623.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|260901940|ref|ZP_05910335.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|28805750|dbj|BAC59027.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747422|gb|EDM58382.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
 gi|308086135|gb|EFO35830.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|308090168|gb|EFO39863.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|308106787|gb|EFO44327.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|308115125|gb|EFO52665.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
          Length = 319

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  FD +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 206 GTGSFDLNSTTLKPESASKLDNLVAFLNEHPQAKVEVVGYTDT---SGAAAYNQKVSEKR 262

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L++ G+   RI +  G   +    ++D       NRR++I+V
Sbjct: 263 AESVANALVEKGIDASRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 310


>gi|328473467|gb|EGF44315.1| outer membrane protein OmpA [Vibrio parahaemolyticus 10329]
          Length = 319

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  FD +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 206 GTGSFDLNSTTLKPESASKLDNLVAFLNEHPQAKVEVVGYTDT---SGAAAYNQKVSEKR 262

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L++ G+   RI +  G   +    ++D       NRR++I+V
Sbjct: 263 AESVANALVEKGIDASRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 310


>gi|4580967|gb|AAD24554.1|AF117962_1 OprF [Pseudomonas chlororaphis subsp. chlororaphis]
          Length = 325

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +  + +  ++  GHTD+         N +LS  RA + 
Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQNPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL    GV   R+  + G+   R     A++   + NRR++
Sbjct: 276 KQVLTSQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 317


>gi|332666433|ref|YP_004449221.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335247|gb|AEE52348.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 958

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           T++G   D   K +           SI D     +F   S   LPE    L +  + +  
Sbjct: 826 TVAGSEDDIPTKNIKQFKIDENPDASIRD----VLFATGSYEILPEAHTYLIQWAKFIQR 881

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           +   I I+GHTD +   +    N  LS +RA +  Q L+++    + +    GF   + +
Sbjct: 882 NKLKIEIQGHTDNT---SSTEFNQVLSENRAQAVRQFLIENNCIAENL-STRGFGESKPE 937

Query: 322 --IASDPMNSANRRI 334
              A++   + NRR+
Sbjct: 938 ASNATEEGRAKNRRV 952


>gi|256425882|ref|YP_003126535.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040790|gb|ACU64334.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 630

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD         + + L ++  +L  +    I I GHTD        +DN  LS  RA +
Sbjct: 526 FFDTRQFALKTGSELELNRLVALLRENPTVTIEISGHTDNI---GNTKDNVLLSERRAQA 582

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
             + L+  G++ +R+ +  G+   +    +      + NRR ++ +  
Sbjct: 583 VVKYLVDKGIAAERL-QAKGYGETKPVADNMTAAGRAENRRTELKILT 629


>gi|146298022|ref|YP_001192613.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146152440|gb|ABQ03294.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 231

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 18/152 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   A++I   L G   + + +G+        +            FD + S   P   
Sbjct: 79  NKMDKQAREIDQALPGASVERVGEGIHLTLNENSVR-----------FDTNKSTLTPTAK 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  V     +  I I G+TD +        N  LS  RA S    L+  G+   R
Sbjct: 128 ANLDKLVPVFNEYGDTDIQIFGYTDNT---GKPEYNLTLSGQRAASVQAYLVSKGLKSSR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             K SG         +D     + NRR++  +
Sbjct: 185 F-KTSGLGIADPIATNDTPEGRAQNRRVEFSI 215


>gi|37523008|ref|NP_926385.1| photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacter
           violaceus PCC 7421]
 gi|68052682|sp|Q7NFT5|PSAB_GLOVI RecName: Full=Photosystem I P700 chlorophyll a apoprotein A2;
           AltName: Full=PsaB
 gi|35214011|dbj|BAC91380.1| Photosystem I P700 chlorophyll A apoprotein A2 [Gloeobacter
           violaceus PCC 7421]
          Length = 872

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 16/148 (10%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA- 260
            +S   A  ++     +    G+++ +       +FD   S    +    L ++  V+  
Sbjct: 726 AISAEQAKGVLSEFKAKPVPGGVMLLL---PENIVFDFDKSSVKLDADPALNRVVGVIQF 782

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           + +E + I GHTD+         N +LS +RA +      K G+  +R++   G+   + 
Sbjct: 783 YGSEPVEILGHTDSL---GEDAYNQKLSEERASAVKAFFEKKGIEAERLTA-KGYGETKP 838

Query: 321 KIAS-------DP-MNSANRRIDILVED 340
              +       +P     NRR++IL++ 
Sbjct: 839 VAPNAKPDGSDNPDGRQQNRRVEILIKT 866


>gi|146343548|ref|YP_001208596.1| putative outer membrane protein (ompA-like) [Bradyrhizobium sp.
           ORS278]
 gi|146196354|emb|CAL80381.1| conserved hypothetical protein; putative outer membrane protein
           (ompA-like) [Bradyrhizobium sp. ORS278]
          Length = 464

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    ++  +L ++ E+        + I GHTDA      +  N  LS  RA + 
Sbjct: 363 FETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTDAE---GDSAANQVLSQKRAQAV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L+K+G+  DR + I G+   +   ++D       NRRI+ +V
Sbjct: 420 ADYLVKAGLPADRFTPI-GYGSTQPIASNDTAEGRTQNRRIEFVV 463


>gi|104780138|ref|YP_606636.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109125|emb|CAK13822.1| putative outer membrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 239

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 13/215 (6%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                  Q +  +++    + K   L            + N                   
Sbjct: 22  SPNPYDNQGQSQESTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAG 81

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
               A K  + L   +A         E  R G  I +I       F   S+   P     
Sbjct: 82  YGYYADKQEAELRAKMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANISPSFYSP 135

Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +       +   I + G TD++      + N  LS  RA +    L   GV   R++
Sbjct: 136 LNNLANSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRVT 192

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            + G    +   ++      + NRR+++ ++   G
Sbjct: 193 -VRGMGPDQPIASNADANGRAQNRRVEVNLKPIPG 226


>gi|262368251|ref|ZP_06061580.1| inner membrane lipoprotein yiaD [Acinetobacter johnsonii SH046]
 gi|262315929|gb|EEY96967.1| inner membrane lipoprotein yiaD [Acinetobacter johnsonii SH046]
          Length = 254

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI- 226
               N  +P L K     +  +    +L  KISS+       N+ + ++    R    + 
Sbjct: 74  ESVANMVVPELKKVYQGKLSVRGTQMELNGKISSSNEVQPTTNLFQSLVTPPYRLNAQLS 133

Query: 227 ------SIIDQ--RNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
                  IID+  +N  + F+  S++       +L ++   L       + I GHTD+  
Sbjct: 134 VNQAEQQIIDEALKNRIIEFESGSAVLAVSGTQILDEMAVALNKVGGKKVKIIGHTDS-- 191

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
                  N  LS +RA +    L+   ++ +R+  + G   ++    +   +    NRRI
Sbjct: 192 -SGDVAKNLALSKERAVAVKNYLINKSIAAERL-SVEGLGSNKPVADNATADGRKKNRRI 249

Query: 335 D 335
           +
Sbjct: 250 E 250


>gi|122879266|ref|YP_202154.6| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 270

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R       + +  Q E   +         K +        +   E N     +S + +  
Sbjct: 65  RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 124

Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            +R++   DL  A   S T++  +     +  + + T    +I          F   SS 
Sbjct: 125 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 175

Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  + +L ++ E ++        I GHTD          N  LS  RA +    +++ 
Sbjct: 176 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 232

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           G+   R++ + G    +     AS    + NRRI   ++
Sbjct: 233 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 270


>gi|325274366|ref|ZP_08140461.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324100500|gb|EGB98251.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 163

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           D     +F         ++  ++++IG+ L     + + + GHTD+      A  N  LS
Sbjct: 53  DLSGKVLFGSDLDSLNSQSQAIVERIGKALLGVGIQRVRVDGHTDS---SGKAAYNQELS 109

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA S  + L+  G+    I    G    +    +        NRR+ I+V
Sbjct: 110 ERRAQSVAKALVGVGMQPQNIQS-QGLGSSQPVADNRTSAGRTENRRVSIVV 160


>gi|226946149|ref|YP_002801222.1| OmpA family protein [Azotobacter vinelandii DJ]
 gi|226721076|gb|ACO80247.1| OmpA family protein [Azotobacter vinelandii DJ]
          Length = 222

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 11/210 (5%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +Q       S    + K   L            + +           +           
Sbjct: 15  QTQDQNQAGQSGMSRTAKYGGLGALAGAAAGALIDHDNRGKGALIGAAVGGAAGAGYGYY 74

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A K  + L   +A     G   E  R G  I +I       F   S+         L  +
Sbjct: 75  ADKQEAQLRQQMA-----GTGVEVQRQGNDIKLI-MPGNITFATGSAEIASNFYTPLNDL 128

Query: 256 GEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKIS 313
                      I + GHTD++      + N  LS  RA S    L+  GV+  R+ ++ +
Sbjct: 129 ANSFKQYDQNSIEVIGHTDST---GSYQTNMSLSQRRAQSVANYLVAQGVNGARVTTRGA 185

Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           G        A++   S NRR++I +    G
Sbjct: 186 GPDSPVASNATESGRSQNRRVEINLRPLPG 215


>gi|302339083|ref|YP_003804289.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636268|gb|ADK81695.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 384

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNI 211
           K + + ++   + + + EE + L   +     ++ R    L +    +    S     + 
Sbjct: 201 KERIIRRTVADDGTTSDEEGFRLIWYTGVDGASLNRMIADLSEGNTAVHEAGSDGSDRDD 260

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270
              +L E    G+++++ +      F    +  LP+ +  L ++  VL+        + G
Sbjct: 261 DTSILVEERSEGVVLTLPNIH----FKPDEAEILPQEVSRLDELARVLSQIRDTSFLVVG 316

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328
           HT     +   +    LS+DRA      L + G+ E R     G    +   ++D     
Sbjct: 317 HTADVGTKESQK---ELSVDRARRIISELSQRGLDESRFL-YDGVGGTQPVASNDNEEGR 372

Query: 329 SANRRIDILVED 340
             NRR++I + +
Sbjct: 373 KKNRRVEIFLLE 384


>gi|260061787|ref|YP_003194867.1| outer membrane protein-like peptidoglycan-associated (lipo)protein
           [Robiginitalea biformata HTCC2501]
 gi|88785919|gb|EAR17088.1| Outer membrane protein-like peptidoglycan-associated (lipo)protein
           [Robiginitalea biformata HTCC2501]
          Length = 453

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD  S+   P ++ V+++I +VL     + + I GHTD+      A  N  LS  R
Sbjct: 347 NAILFDSGSANLQPRSMGVIRQISQVLQQDGGMSLQIVGHTDS---DGDADANVALSQAR 403

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           A +  + L+   GV   R+S + G         ++     + NRR++ +
Sbjct: 404 AEAVKKALVDVYGVDAGRLSTL-GKGESEPVSDNNSPAGKAQNRRVEFI 451


>gi|262376393|ref|ZP_06069622.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308532|gb|EEY89666.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 255

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKI 255
           +  +    GL+ +N          +    I     +N  + F+  S++     I +L ++
Sbjct: 113 QDTTEKFKGLIPENYRLNAQLSVNQAEQRIIDAALKNRIIEFESGSAVLATSGIQILDEM 172

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
              L   +   I I GHTD+         N  LS  RA +    L+   V    +    G
Sbjct: 173 VSALNKVSGKKIRIIGHTDS---SGDINKNLMLSQQRAEAVKSYLIAKNV-PTHLLSTKG 228

Query: 315 FAHHRLKIASDPMNS--ANRRIDILVE 339
               +    +   +    NRRI+  V 
Sbjct: 229 SGSSKPVADNATADGRKRNRRIEFEVL 255


>gi|114327023|ref|YP_744180.1| outer membrane protein A [Granulibacter bethesdensis CGDNIH1]
 gi|114315197|gb|ABI61257.1| outer membrane protein A [Granulibacter bethesdensis CGDNIH1]
          Length = 361

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +        ++ +            I + G+TD        + N RLS+ RA S
Sbjct: 259 FFDWDRADLTARAREIVAEAARASTQVQATRIEVNGYTDK---SGTPQYNQRLSVRRAQS 315

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
               L+K GV  + I  I GF      + +        NRR++I++
Sbjct: 316 VAAELVKDGVPRNVIF-IHGFGETHPLVPTAQGVREPQNRRVEIIL 360


>gi|218259786|ref|ZP_03475375.1| hypothetical protein PRABACTJOHN_01034 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224914|gb|EEC97564.1| hypothetical protein PRABACTJOHN_01034 [Parabacteroides johnsonii
           DSM 18315]
          Length = 227

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +TL        +           + ++     +  +F  +SS     + 
Sbjct: 72  KKMDKQKKELEATLPEETTVETINN------GEALKVTF---DSGILFATNSSTVSAASK 122

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED 307
             L+ +   L  + +  I I GHTD +        N  LS  RA S +  L    GVS  
Sbjct: 123 SALRDLAASLNANPDTDIKIIGHTDNT---GKVDYNQTLSEKRAKSVFDYLMEDQGVSSK 179

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           R++   G   H     +      + NRR++IL+  
Sbjct: 180 RMT-YEGKGVHEPVADNSTPEGRALNRRVEILILP 213


>gi|87311740|ref|ZP_01093855.1| probable outer membrane protein A (OmpA) [Blastopirellula marina
           DSM 3645]
 gi|87285524|gb|EAQ77443.1| probable outer membrane protein A (OmpA) [Blastopirellula marina
           DSM 3645]
          Length = 265

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 24/213 (11%)

Query: 135 SNSQQSEHCKNSL----TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
              QQS+  ++ +     +  + G+ L ++     S  +E    L    +     +    
Sbjct: 61  QTQQQSKILQDEVGLLKKQLRDAGEQLTQAQQQIASAKQENTTLLASTRQRGGATITPNN 120

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            LQ    +I            + G         I I I   +   +F   ++        
Sbjct: 121 SLQQSVSQIQ-----------ISGAQVRVDGDLIRIEIPADQ---IFMTGTNTLHQNAYG 166

Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307
            L ++   +       +I + GHTD            +LS   A + +  L+  G V  +
Sbjct: 167 TLDQVANAIRQQFPRNLIGVEGHTDNQAASPPFASQHQLSASMAQATFDQLVARGQVPPN 226

Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           R+  + G   +   +++      + NRRIDI++
Sbjct: 227 RLF-VVGHGGNHPVVSNATPAGQARNRRIDIVI 258


>gi|27376195|ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium japonicum USDA 110]
 gi|27349334|dbj|BAC46349.1| blr1084 [Bradyrhizobium japonicum USDA 110]
          Length = 464

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P++  +L  + E  L   T  I + GHTDA         N  LS  RA + 
Sbjct: 363 FATKRADIDPDSAGILDHLIETALRCPTTNIDVAGHTDAD---GEDAFNQALSEKRAQAV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
              L+K+G+   R + I G+   +    +D  +  + NRRI+ LV
Sbjct: 420 IDYLVKAGLPASRFTAI-GYGSTQPVAGNDTDDGKAQNRRIEFLV 463


>gi|329888176|ref|ZP_08266774.1| ompA family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846732|gb|EGF96294.1| ompA family protein [Brevundimonas diminuta ATCC 11568]
          Length = 330

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  L  +   +  + ++L       +S+ GHTD +        N  LS +RA + 
Sbjct: 228 FALDKADILDASRPQIDAMAQMLKDEAGLRLSVEGHTDNT---GAPARNRPLSEERARAV 284

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L + G+   R+    GF   +     ASD   + NRR++++
Sbjct: 285 VAALTQQGIDAKRLEA-KGFGADKPVADNASDEGRARNRRVELV 327


>gi|305666954|ref|YP_003863241.1| OmpA family protein [Maribacter sp. HTCC2170]
 gi|88709183|gb|EAR01417.1| OmpA family protein [Maribacter sp. HTCC2170]
          Length = 217

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 19/152 (12%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETI 249
           R+   A++I   + G            E TR G  I++       + FD S S     + 
Sbjct: 65  RMDRQAERIEEEIPGA-----------EVTRVGEGINVTFNEEAGVYFDTSKSNVKGTSA 113

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  +        + I GHTD+         N +LS  RA S    L+  G+  +R
Sbjct: 114 TTLDKLAGIFKEYPNSDVLIEGHTDS---AGPDDYNMKLSQQRAESVTNYLISKGIEANR 170

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338
                 +  ++ K  ++     + NRR+++ +
Sbjct: 171 F-STKWYGENQPKADNETTEGKAKNRRVELAI 201


>gi|298372894|ref|ZP_06982884.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275798|gb|EFI17349.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 587

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 17/239 (7%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
           K           +K+  +  E  +      + S     +     E   +  +   L  S 
Sbjct: 356 KTPSVKHDIYMQKKESAKPTEYTVMGKVMDEDSGKTIGNAVVTVENNTNGTEQNYLTNSF 415

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
             E +  L       I A   +    +  K    T        +   +  +  +    I 
Sbjct: 416 G-EYSVALKAYETYTISATAPECLPSEGKKFKKDTYDPSKTSTVENNIYLKRVKKNEAIR 474

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           +    +   +D + +   P+    L ++ + L  + +  + +  HTD+   R     N R
Sbjct: 475 L----DNVHYDLNKATIRPDARPELDRLVKYLKDNPKIRVEMSSHTDS---RGSDAYNQR 527

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           LS  RA +    L++ G++  RI  + G+   +L          ++  +  NRR ++ V
Sbjct: 528 LSQQRADAVKLYLVEKGIAPSRIKSV-GYGETKLLNNCGNGSNCTEEQHQLNRRTEMKV 585


>gi|153833086|ref|ZP_01985753.1| outer membrane protein [Vibrio harveyi HY01]
 gi|148870654|gb|EDL69561.1| outer membrane protein [Vibrio harveyi HY01]
          Length = 208

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   SS   P  +  +  + + L       I ++G+T           N  LS  RA
Sbjct: 85  RVLFANDSSAIDPVFVNQISDLSDFLKEYPTTSIELQGYTS---ITGTDEYNLALSKRRA 141

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            S  Q L+ +G+S +R+ +I GF    L      +  ++ NRR+   V   +G
Sbjct: 142 ESVRQELINNGISPERL-RIVGFGETNLASQGTDETSHALNRRVTATVVGYKG 193


>gi|167032610|ref|YP_001667841.1| OmpF family protein [Pseudomonas putida GB-1]
 gi|166859098|gb|ABY97505.1| OmpF family protein [Pseudomonas putida GB-1]
          Length = 344

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 295 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAINRRVE 336


>gi|4580972|gb|AAD24559.1|AF117967_1 OprF [Pseudomonas putida]
          Length = 338

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 295 KQVLTQQYGVESTRVDSV-GYGETRPVADNATEEGRAVNRRVE 336


>gi|58427732|gb|AAW76769.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 272

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R       + +  Q E   +         K +        +   E N     +S + +  
Sbjct: 67  RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 126

Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            +R++   DL  A   S T++  +     +  + + T    +I          F   SS 
Sbjct: 127 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 177

Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  + +L ++ E ++        I GHTD          N  LS  RA +    +++ 
Sbjct: 178 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 234

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           G+   R++ + G    +     AS    + NRRI   ++
Sbjct: 235 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 272


>gi|325928737|ref|ZP_08189907.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
 gi|325540905|gb|EGD12477.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
          Length = 229

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  IS+    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 92  NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 150

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 151 DSV---GSDAVNQRLSEERASAVAQYLTAQGVQRERMETMGAGKRYPIADNTTDAGRAKN 207

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 208 RRVEIRLIPLRA 219


>gi|312884493|ref|ZP_07744197.1| putative lipoprotein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367805|gb|EFP95353.1| putative lipoprotein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 222

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 200 SSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
               + L  + +  GV  E T    + + +    N   F   SS         L+ +  +
Sbjct: 83  DQQEAALRKELLNSGVQVERTGENQLRLRM---ENGIGFSSGSSTLDNSIHKTLRGVARI 139

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L    E  + I G+TD++      R N  LS  RA S    L+  GV+  R     G   
Sbjct: 140 LVEYPETSLVIEGNTDST---GSDRTNQILSEKRAESVRGYLVGQGVAPGRAVS-RGLGE 195

Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342
            +     ++    + NRR++I +   +
Sbjct: 196 RQPICTNSTKEGRACNRRVEIKILPLK 222


>gi|294649621|ref|ZP_06727038.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292824498|gb|EFF83284.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 217

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +  KK+   + G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDNKEKKLRQQMQGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ +VL   +   I + G+TD +        N  LS  RA S    L   G++ +RI 
Sbjct: 128 LNKVAQVLGEDNQSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGIASNRID 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +        NRR++I +  +Q
Sbjct: 185 A-QGYGSSNPIADNSTAAGREQNRRVEISIYAKQ 217


>gi|170724980|ref|YP_001759006.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810327|gb|ACA84911.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 229

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 17/214 (7%)

Query: 128 ENNIFYLSNSQQSEHCKNSLTRD-SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +  +      Q SE  +  L    S KG +L ++  +        +     + ++     
Sbjct: 24  QEMVSEPMQPQASEQGQYELASFCSAKGYNLSQNVTISDVAGIANHRDGYLMIRQDSDQA 83

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPL 245
           + K  L  LAK  +  +S    + +    L E  +  G+L           FD  S    
Sbjct: 84  EIKTALLKLAK--NQDVSINCMEYLSSNGLVEFGSGEGLL-------ARVYFDFDSKSLT 134

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           PE+ ++L K+ + L  + EVI + GHTD          N+ L L RA +A   L K GV 
Sbjct: 135 PESRLILDKVAKRLVQAPEVIKLVGHTDN---SGSEEYNYSLGLLRADNAQTYLNKQGVR 191

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           + ++   S     R   +++     + NRR+++L
Sbjct: 192 DTQLKSES-QGETRPIASNENLDGRALNRRVELL 224


>gi|326796261|ref|YP_004314081.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326547025|gb|ADZ92245.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 213

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+       P+    L ++G+ L  +   I+ I GHTD          N  LS  RA S 
Sbjct: 81  FETGKYNLKPKYYPGLVELGKFLQKNPNTIAIITGHTDDI---GDEESNEILSQRRAQSI 137

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            + L  K  +  +RI  + G+   R    ++       NRR+   V  +
Sbjct: 138 AKALSEKFKIDIERIVAL-GYGESRPMYPNETDVERRKNRRVQASVVSK 185


>gi|188575566|ref|YP_001912495.1| OmpA family domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520018|gb|ACD57963.1| OmpA family domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 268

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R       + +  Q E   +         K +        +   E N     +S + +  
Sbjct: 63  RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 122

Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            +R++   DL  A   S T++  +     +  + + T    +I          F   SS 
Sbjct: 123 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 173

Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  + +L ++ E ++        I GHTD          N  LS  RA +    +++ 
Sbjct: 174 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 230

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           G+   R++ + G    +     AS    + NRRI   ++
Sbjct: 231 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 268


>gi|157889021|dbj|BAF80966.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             K++++    K+I  T S      ++  +  E T     I++        F    +   
Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232

Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE    +Q++G++L  + +  +I  GHTD++        N +LSL+RA +  + L K+GV
Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVAKELEKTGV 289

Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++++I    G+   + K ++D     + NRR++
Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321


>gi|88860858|ref|ZP_01135494.1| putative lipoprotein [Pseudoalteromonas tunicata D2]
 gi|88817071|gb|EAR26890.1| putative lipoprotein [Pseudoalteromonas tunicata D2]
          Length = 214

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
            E  R G  + ++   +   F    S         L  I +V+    +  +SI GHTD++
Sbjct: 90  VEVVREGDNLRLV-MPSNITFATDQSYISTGFHDTLDAIAKVMNKYEKTFLSIEGHTDST 148

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                   N  LS  RA S    L+   + + RI    G+   R   +++     + NRR
Sbjct: 149 ---GKTEYNQNLSEQRALSVKNYLLNKQILDVRI-STQGWGESRPIASNETSSGRALNRR 204

Query: 334 IDILVEDRQG 343
           ++I +   + 
Sbjct: 205 VEIQIVPNKA 214


>gi|325286811|ref|YP_004262601.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322265|gb|ADY29730.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 643

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL---AKKISSTLSGLVADNIVKGVLF 217
            +LE + +      +P   K  I+A K+K  L      A+++ +     +  +     + 
Sbjct: 456 KELESAEDGSYEIEVPWQEKITIIASKKKYSLFRQFYTAEELKNKKQTPIYLDFADDFVV 515

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E     +L     + N  +F   SS   P+ I  L K   ++    E  + I  HTD+  
Sbjct: 516 EKEGKSML-----KLNKFIFKTKSSKLTPDIIKELDKAITIIKKFPEFNLQIESHTDS-- 568

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNS 329
            +  +  N+R+S  RA +  + L+ +G+    I    G+    +           D  ++
Sbjct: 569 -KGGSSSNFRISQARADNIKKYLLNNGIPSKNILYTIGYGEDHVLNKCVNGVYCIDYFHA 627

Query: 330 ANRRIDILVED 340
            NRR +I+V +
Sbjct: 628 ENRRCNIVVLN 638


>gi|325274538|ref|ZP_08140599.1| OmpF family protein [Pseudomonas sp. TJI-51]
 gi|324100318|gb|EGB98103.1| OmpF family protein [Pseudomonas sp. TJI-51]
          Length = 345

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 239 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 295

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 296 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAINRRVE 337


>gi|307729050|ref|YP_003906274.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583585|gb|ADN56983.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 168

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N   G+       G+ + +       +FD + S    +   V+ +   +L  S + I + 
Sbjct: 33  NKAVGIEVAPVTDGVAVKL---PEKALFDFNKSDVRSDASGVIDRSAVLLKRSKKPIIVE 89

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           G+TD      +   N +LS  RA +    L+  GV+ DRI +  G A++    ++D    
Sbjct: 90  GYTDN--VGTLEY-NQQLSEARAVAVGYALVARGVAMDRI-RTKGNAYNNPVASNDTPEG 145

Query: 328 NSANRRIDILV 338
            + NRR +I+V
Sbjct: 146 RALNRRTEIVV 156


>gi|254292013|ref|ZP_04962792.1| lipoprotein, putative [Vibrio cholerae AM-19226]
 gi|150422090|gb|EDN14058.1| lipoprotein, putative [Vibrio cholerae AM-19226]
          Length = 223

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +  + L   + D+ V+ V     +  + +      N   F  +S          L+ +  
Sbjct: 85  QQEAELRKALMDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L    +  + I GHTD++        N  LS  RA S    L+  GV+E R     G  
Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDSTNQVLSEKRAESVRSFLLSQGVAEGRAIA-RGNG 195

Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342
                 +++       NRR++I +   +
Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223


>gi|91975364|ref|YP_568023.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91681820|gb|ABE38122.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 464

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 17/288 (5%)

Query: 56  ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           A D   ++AI        +    A     D + PP     NK  ++    +T    D  +
Sbjct: 188 ARDLGGREAIAAALRNLPEGYSVAEN---DIKAPPYVFQANKDPVASTLTLTGYVPDNAV 244

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
            +       Q+  +     +        +            L + +     ++  E    
Sbjct: 245 HAALADTAGQKFFSEKVVDNLKASIGAPQGFANAVKPALGALSRLSTGTLIVSDREVRLS 304

Query: 176 PPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                E  ++  R +  +D+ +   + + LS   A + V   + +     +L      ++
Sbjct: 305 GDALFEAAVSQIRAELNKDMPQGWTVKADLSVKPAASPVDATVCQQLFNDLL-----GKS 359

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           T  FD +S+    ++  +L ++ E         I + GHTD+      A  N  LS  RA
Sbjct: 360 TVRFDSASASIDKDSAGLLDRLIETAMRCPGAAIEVAGHTDS---AGEAGSNQALSERRA 416

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            +    ++++G+S +R  +  G+          +D   + NRRID ++
Sbjct: 417 RAVVDYMVRAGLSPERF-RAFGYGSKIPLEGNETDAGKAKNRRIDFMI 463


>gi|134292200|ref|YP_001115936.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134135357|gb|ABO56471.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 224

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           ++     +F    +   P     L K+       T   +++ G+TD+         N  L
Sbjct: 114 VNLAGDALFATGQATLTPAARASLDKLLSEREDHTYTEVTVTGYTDS---AGSDAANLAL 170

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           S  RA    + L   G+    +  ++G          A+    +ANRR++I ++ 
Sbjct: 171 SKRRADVVARYLHAHGLKAHTM-AVAGRGSADPVGSNATAEGRAANRRVEISLKR 224


>gi|26988814|ref|NP_744239.1| OmpF family protein [Pseudomonas putida KT2440]
 gi|148548857|ref|YP_001268959.1| OmpF family protein [Pseudomonas putida F1]
 gi|24983615|gb|AAN67703.1|AE016401_6 outer membrane protein OprF [Pseudomonas putida KT2440]
 gi|148512915|gb|ABQ79775.1| OmpF family protein [Pseudomonas putida F1]
 gi|313499790|gb|ADR61156.1| OprF [Pseudomonas putida BIRD-1]
          Length = 344

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 295 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAVNRRVE 336


>gi|221200257|ref|ZP_03573299.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221205937|ref|ZP_03578951.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221173949|gb|EEE06382.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221179598|gb|EEE12003.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 220

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  +      +F    +   P     L K+       +   +S+ G+TD+         N
Sbjct: 107 VEHVSLSGDALFASGLATLTPAARASLDKLLNAYGDRSYTQVSVTGYTDSV---GSDASN 163

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L + G+   R   ++G        ++      + NRR++I ++ 
Sbjct: 164 LALSKRRAEAVAAYLQQRGLQA-RSLTVTGRGSADPIASNATAEGRATNRRVEISLQR 220


>gi|163786090|ref|ZP_02180538.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
 gi|159877950|gb|EDP72006.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
          Length = 627

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
            + ++ +       I +        FD +     P+    L  +  +L       I +  
Sbjct: 501 AEEIVTDDEDGNTYIEL----ENIYFDFAKWDIKPQAARTLDILVALLKKYPRMEIQLGA 556

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SD 325
           HTD+   R     N  LS  RA +  + L+++G+S  R++   G+   +  +      ++
Sbjct: 557 HTDS---RAGFEFNMDLSHKRAKATLEYLVENGISRARLTS-KGYGETQPLVPCGDNCTE 612

Query: 326 PMNSANRRIDILVE 339
              S NRR + L+ 
Sbjct: 613 TEFSINRRCEFLIL 626


>gi|312884285|ref|ZP_07743994.1| hypothetical protein VIBC2010_10946 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368058|gb|EFP95601.1| hypothetical protein VIBC2010_10946 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 125

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +  F+  S          L  +   L       ++I G+TD+      A  N +LS
Sbjct: 13  EEYGSGTFEFDSCKLTQSVAERLDNLANFLNEYPTSRVAITGYTDS---SGPAAYNLKLS 69

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
             RA +    L+ +G+ E R++  +G   +     +        NRR+++++
Sbjct: 70  EMRAQAVKDYLISAGIEEARLTA-TGLGENNPVADNCTHEGREKNRRVEVVI 120


>gi|110639367|ref|YP_679576.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282048|gb|ABG60234.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 712

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS  LPE    L K+ + L    +  + I GHTD       A  N RLS  RA + 
Sbjct: 589 FDNNSSKILPEMEGDLDKVVDFLVDHPQIKLVISGHTDG---SGDAAANLRLSQARADAI 645

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRID 335
              ++ K  + E RI  + G+ + +  I    S+     NRR++
Sbjct: 646 KSYIMEKGNIDESRIEAV-GYGNQKPIIQQEVSESDRKINRRVE 688


>gi|21111774|gb|AAM40073.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575109|gb|AAY50519.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 431

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           G +I++ D     +FD   +   P+   VL  +   L   +   + +RGHTDA   +   
Sbjct: 314 GYVITLSD---RILFDFDKADIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 367

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334
             N  LS  RA +    L   G ++   +   G+   +    +      +P     NRR+
Sbjct: 368 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 425

Query: 335 DILVED 340
           ++ +  
Sbjct: 426 ELFLRT 431


>gi|317178824|dbj|BAJ56612.1| flagellar motor protein MotB [Helicobacter pylori F30]
          Length = 255

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD  P  +   + ++ L+ +RAY   +VL++ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDMPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Herbaspirillum seropedicae SmR1]
 gi|300072876|gb|ADJ62275.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 10/154 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
            +  + + Q +A  ++S+L+     N   G+   T+  G+L + +  R    F+   +  
Sbjct: 120 EVANEAQRQQIASDMASSLNSSYTVN--NGLRVSTSEQGLLDNALANRVVS-FESGQATL 176

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            PE   +L +I   +       + I G+TD      +   N  LSL RA +    L   G
Sbjct: 177 TPEGKRILDEIAATMLKLKGRHVEIIGNTDNE---GLRASNISLSLARADAVKAYLGAKG 233

Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           V E  +   SG    R   ++      + NRRI+
Sbjct: 234 VDES-LLSTSGQGPDRPVASNATAEGRAKNRRIE 266


>gi|89902522|ref|YP_524993.1| Type I secretion outer membrane protein TolC [Rhodoferax
           ferrireducens T118]
 gi|89347259|gb|ABD71462.1| Type I secretion outer membrane protein, TolC [Rhodoferax
           ferrireducens T118]
          Length = 609

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   S    E +  L  +   +      + I  GHTD+    +   +N RLSL RA S
Sbjct: 500 LFDSGKSNLKAEGLRSLDSLLARIKGVQLDVVIAVGHTDS--VGSEEFNN-RLSLARAES 556

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
               L+  GV   R+  + G    +     A++  ++ NRR+D+
Sbjct: 557 VRAYLVGKGVDVKRVRAV-GKGESQPIADNATEAGHAKNRRVDV 599


>gi|237747505|ref|ZP_04577985.1| outer membrane protein A [Oxalobacter formigenes HOxBLS]
 gi|229378856|gb|EEO28947.1| outer membrane protein A [Oxalobacter formigenes HOxBLS]
          Length = 207

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   SI  PE    L ++   L+     + +  GHTD   +      N +LS  RA +
Sbjct: 98  FFDFDKSIVKPEGKAKLDELVNALSGLDTEVIVAVGHTD---WIGTDAYNQKLSERRANA 154

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
               L+  GV  ++I    G    +    +      + NRR+++ V   +G
Sbjct: 155 VKAYLVSKGVPAEKIF-TEGKGKKQPIADNKTRQGRAKNRRVEVEVVANRG 204


>gi|145301089|ref|YP_001143930.1| outer membrane lipoprotein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853861|gb|ABO92182.1| outer membrane lipoprotein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 218

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  + I++  N   FD SS+         L  +  V+A  
Sbjct: 81  VQEAKLREKLQGTGVSVTRNGDEL-ILNMPNNVTFDSSSAQLKAAGANTLSGVAMVVAEF 139

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ GHTD++  R++   N +LS  RA +    L+  GV+  RI    G    +  
Sbjct: 140 DKTRLNVVGHTDSTGSRDL---NMKLSAQRADAVAAQLIGHGVTGSRI-STQGVGPDQPV 195

Query: 322 IASDPMN--SANRRIDILVED 340
             +      + NRR+ I +  
Sbjct: 196 ATNSTAAGKAQNRRVTITLIP 216


>gi|84501675|ref|ZP_00999847.1| OmpA family protein [Oceanicola batsensis HTCC2597]
 gi|84390296|gb|EAQ02855.1| OmpA family protein [Oceanicola batsensis HTCC2597]
          Length = 222

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        +L +    +       + + GHTD       +  N+RL L RA + 
Sbjct: 79  FAFNSAALDATARQILARQAHWIRQFPEVRLRVYGHTD---LVGSSSYNYRLGLRRAQAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +      +  + +      NRR
Sbjct: 136 VHFLVAQGISRSRLEAVVSKGETQPLVVTQGRERRNRR 173


>gi|253701505|ref|YP_003022694.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251776355|gb|ACT18936.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 466

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +I  PE    + ++G  +         I GHTD          N  LS  RA + 
Sbjct: 235 FDIDKAIIRPEYKEEIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNQDLSQRRAEAV 291

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L++  G+   R+S   G+   R     A+D     NRRI+ +++
Sbjct: 292 VNHLVEQYGIERSRLSA-KGYGFTRPIADNATDEGKQKNRRIEAIID 337



 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +    + K+ + +   +T    I GHTD +        N +LS  RA + 
Sbjct: 359 FDPGKAEVKQQYRNEIAKVADYMKRYNTTTAVIEGHTDNT---GSPEKNMKLSQQRAQNV 415

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339
              L+ + G+   R+S     A  R+   + P     NRRI+ +++
Sbjct: 416 VNHLVDNFGIERSRLSAKGYGATRRISYNNTPEGRQKNRRINAVID 461


>gi|152996565|ref|YP_001341400.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837489|gb|ABR71465.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 209

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +         L+ + + L       + I GHTD+      A  N  LS  RA +
Sbjct: 79  LFDTGKADIKQRFYSELKDLAKFLKEHPASTVVIEGHTDSQ---GSAELNQELSQQRASA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              VL+ S  +  DR+  I G+   R    +D  +    NRR+   V  +Q
Sbjct: 136 IADVLVDSFRIQADRVKGI-GYGATRPIADNDTEDGRKLNRRVVAEVFAKQ 185


>gi|146301711|ref|YP_001196302.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146156129|gb|ABQ06983.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 642

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA 274
           L E     + I I        FD   S    +  + L K+  +++     VI I  HTD+
Sbjct: 516 LIERKDGLLKIKI----GIIFFDLDKSDVRYDAAIELNKVVLLMSQYPSVVIKIESHTDS 571

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPM 327
               N    N  LS  RA +    ++  G++ +RI    G+   +L          ++  
Sbjct: 572 R--ANDQY-NLELSDRRAKATRDYIISQGIAPERIESAIGYGETQLINNCSNGVPCTEAQ 628

Query: 328 NSANRRIDILV 338
           +  NRR + ++
Sbjct: 629 HQMNRRSEFII 639


>gi|242279927|ref|YP_002992056.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122821|gb|ACS80517.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 240

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           V  +     + I +   R    F    +I   +T   L ++ EVL  S   I I GHTDA
Sbjct: 109 VSMKEEDGELKIVM---RGNAFFAPGQNIFEDKTRQYLAEVAEVLKTSKHAIHIIGHTDA 165

Query: 275 S-PFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA-- 330
           S   +  A++++ LS  RA    + L+ +  +   RI  +SG      ++  D       
Sbjct: 166 SDAAKVGAQNSFELSARRAAKVAEFLINTKSIDPVRII-VSGRGGVAPELPDDMGKVEGN 224

Query: 331 NRRIDILVED 340
           NRR++I+V +
Sbjct: 225 NRRVEIVVIN 234



 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 63/203 (31%), Gaps = 10/203 (4%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80
            + D   + +  W + ++D M V+   F+V++I + + ++ K   E   N   +  M  +
Sbjct: 16  KSGDADTSGMNGWAVPWSDLMMVMFVLFVVLFIYSQSKENIKVIFEG--NAQSEVAMNPA 73

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+ +  +    +  +   + +         D    S  ++    ++           Q 
Sbjct: 74  DGLIEMISFHRDAMSSSARVIMTPEDVLYRSDDGAVSMKEEDGELKIVMRGNAFFAPGQ- 132

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                      +K +            +K   + +          +  +   +  A++ +
Sbjct: 133 -------NIFEDKTRQYLAEVAEVLKTSKHAIHIIGHTDASDAAKVGAQNSFELSARRAA 185

Query: 201 STLSGLVADNIVKGVLFETTRTG 223
                L+    +  V    +  G
Sbjct: 186 KVAEFLINTKSIDPVRIIVSGRG 208


>gi|84624974|ref|YP_452346.1| putative lipoprotein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368914|dbj|BAE70072.1| putative lipoprotein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 266

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R       + +  Q E   +         K +        +   E N     +S + +  
Sbjct: 61  RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 120

Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
            +R++   DL  A   S T++  +     +  + + T    +I          F   SS 
Sbjct: 121 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 171

Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P  + +L ++ E ++        I GHTD          N  LS  RA +    +++ 
Sbjct: 172 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 228

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           G+   R++ + G    +     AS    + NRRI   ++
Sbjct: 229 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 266


>gi|107023374|ref|YP_621701.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116690456|ref|YP_836079.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170733777|ref|YP_001765724.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|254247501|ref|ZP_04940822.1| Outer membrane porin F [Burkholderia cenocepacia PC184]
 gi|105893563|gb|ABF76728.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116648545|gb|ABK09186.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|124872277|gb|EAY63993.1| Outer membrane porin F [Burkholderia cenocepacia PC184]
 gi|169817019|gb|ACA91602.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 215

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     SI G+TD++      + N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSQQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVNGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 212


>gi|325066515|ref|ZP_08125188.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Actinomyces oris K20]
          Length = 359

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281
           G +I++ D     +FD  SS    E    L  +  VL  S    + ++GHTD+    +  
Sbjct: 240 GTVITLEDS---VLFDFGSSDLRGEASTTLTNLATVLKDSKAPKVQVQGHTDSV---SDD 293

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333
             N +LS  RA +    L  +G + D   +  G+   +    +       +P     NRR
Sbjct: 294 AFNQKLSEQRAQAVSSALKSNGATAD--LEAVGYGETKPVAPNENPDGSDNPGGRRLNRR 351

Query: 334 IDILV 338
           +++ V
Sbjct: 352 VEVFV 356


>gi|269964170|ref|ZP_06178467.1| outer membrane protein, putative [Vibrio harveyi 1DA3]
 gi|269831125|gb|EEZ85287.1| outer membrane protein, putative [Vibrio harveyi 1DA3]
          Length = 205

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     + ++   L       I I+G+  AS     A  N  LS  RA +
Sbjct: 83  LFANDSDSINPVFQRKITELAAFLKKYPATSIEIQGY--ASKVGTAAY-NLELSRRRASN 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQG 343
              +L+K G+SE R++ I GF    L      D  ++ NRR+   V   +G
Sbjct: 140 VRNLLIKQGISEKRLT-IVGFGDTHLVQLGTDDVSHALNRRVTATVIGHKG 189


>gi|332664439|ref|YP_004447227.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333253|gb|AEE50354.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 228

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           + +++ K    E     IL++     +  MFD  S      T   L K  E +    +  
Sbjct: 86  LKEDLGKSAEVERVGESILVTF---DSGIMFDVDSYALKAATRANLDKAAETMKEYDKTE 142

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I + GHTDA+        N +LS +RA +    L ++GV+  R++K  GF   +   ++ 
Sbjct: 143 IIVMGHTDAT---GSDEYNQKLSENRAAAVSSFLQQNGVTASRLTK-KGFGEQKPVASNT 198

Query: 326 PMNSA--NRRIDILVEDRQG 343
            ++    NRR++I +   + 
Sbjct: 199 SVSGREQNRRVEIAIVASKA 218


>gi|325068011|ref|ZP_08126684.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 499

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         LQ +   LA       +SI GHTD    ++ A  N  LS  RA +
Sbjct: 211 FASDSADLASGAEAQLQTVAGQLAQYPNGGTLSIVGHTDD--VQDDAY-NQTLSEKRANA 267

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               L +    +   + +SG    + KI    D   + NRR++I
Sbjct: 268 VKTRLEQLTKLDKWQTSVSGKGESQPKINDTTDEARAVNRRVEI 311


>gi|296272285|ref|YP_003654916.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296096460|gb|ADG92410.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 343

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SSI   +    +++  E L    +   +I GHTD   +    + N  LS  RA SA
Sbjct: 241 FPIDSSIIDEKYKHRIKEFAEFLNKHPKLKATIEGHTD---YTGTKKYNLWLSKRRANSA 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           ++ L K  V   R+  I G+   R    +      + NRRI+
Sbjct: 298 FEALKKYDVDPARLKTI-GYGETRPIATNKTKEGRAKNRRIE 338


>gi|213028311|ref|ZP_03342758.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 111

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD SS+   P     L  +  VL    +  +++ G+TD++   ++   N RLS  RA S 
Sbjct: 7   FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL---NMRLSQQRADSV 63

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
              L+  GV   RI + SG        ++      + NRR++I +   Q
Sbjct: 64  ASSLITQGVDASRI-RTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ 111


>gi|269964125|ref|ZP_06178424.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831140|gb|EEZ85300.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 197

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            + +   +F   SS   P     +  + + L       I ++G+T           N  L
Sbjct: 69  QEMQIRVLFANDSSEIDPVFAKQISDLSDFLKEYPTTSIELQGYTS---ITGTDEYNLAL 125

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           S  RA S  Q L+ +G+S DR+ +I GF    L      +  ++ NRR+   V   +G
Sbjct: 126 SKRRAESVRQELINNGISPDRL-RIVGFGETNLASTGTDETSHALNRRVTATVVGYKG 182


>gi|259417968|ref|ZP_05741887.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346874|gb|EEW58688.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 207

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+        VL    + +         + GHTDA         N RL L RA +A
Sbjct: 66  FDFDSARLDGNARQVLDAQADWIRQFPEVRFRVYGHTDAV---GSQSYNKRLGLRRARAA 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G++ +R+  ++ F   +  + +D     NRR
Sbjct: 123 VNYLVARGIARNRLEAVASFGETQPLVLTDQRERRNRR 160


>gi|60650175|ref|YP_209728.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|255010962|ref|ZP_05283088.1| putative outer membrane protein [Bacteroides fragilis 3_1_12]
 gi|313148766|ref|ZP_07810959.1| lipoprotein [Bacteroides fragilis 3_1_12]
 gi|317477470|ref|ZP_07936697.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|60495255|emb|CAH05749.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|313137533|gb|EFR54893.1| lipoprotein [Bacteroides fragilis 3_1_12]
 gi|316906390|gb|EFV28117.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 213

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            + +D EK + +  + +           + +++R + + +KI +  + L A + +  +  
Sbjct: 30  AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
              + G        ++  +F   S     E   +L  +  ++       I I GHTD   
Sbjct: 89  YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNI- 147

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335
                + N  LS +RA +    L  +G+  + I++   G++       S+   + NRR++
Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205

Query: 336 ILVEDRQ 342
           I + + +
Sbjct: 206 IFITNDE 212


>gi|124022953|ref|YP_001017260.1| hypothetical protein P9303_12471 [Prochlorococcus marinus str. MIT
           9303]
 gi|123963239|gb|ABM77995.1| Hypothetical protein P9303_12471 [Prochlorococcus marinus str. MIT
           9303]
          Length = 252

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +I+     +FD   +   P  +  L+ + + +  ++   + + GHTD+   +     N  
Sbjct: 132 LIELAADVLFDFDKANLKPSAVASLETVAKRIRETSQGDVRVEGHTDS---KGSNEYNQT 188

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILV 338
           LS  RA S     +  G   +      GF   +  +++       +P     NRR++I++
Sbjct: 189 LSEKRAISVRDWFVSDGGLSNVQFVTKGFGELKPVVSNTTEKGGDNPIGRQRNRRVEIII 248

Query: 339 ED 340
           + 
Sbjct: 249 KT 250


>gi|307822441|ref|ZP_07652673.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307737007|gb|EFO07852.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 363

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +S+        +L  +   L        I ++GHT +       + N +LS  RA S
Sbjct: 260 FKYNSAELTLNAKEILDGVAGNLVSYPQKNDIEVQGHTSSE---GTNKYNLKLSQRRAQS 316

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
               L   GV  +R++   G+   +    +      + NRR++++
Sbjct: 317 VVDYLKLKGV-TNRLTA-KGYGETQPIADNSTEAGKAENRRVELI 359


>gi|163754618|ref|ZP_02161740.1| phosphoglycerate kinase [Kordia algicida OT-1]
 gi|161325559|gb|EDP96886.1| phosphoglycerate kinase [Kordia algicida OT-1]
          Length = 457

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 31/267 (11%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
           KG+ +    P+       D   D   T     L              +++   ++ +   
Sbjct: 215 KGLPEFNGCPDTDGDGIEDSKDDCPDTAGLAALNGCPDTDGDGIADAKDDCPEVAGTAAM 274

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C ++        KD C +           N   P   K+    + +  R  ++A    
Sbjct: 275 NGCPDADGDGITDAKDNCPNE-----AGPSANKGCPWTDKDGDGVLDKDDRCPEVAG--- 326

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGE 257
                 VA+N     +   T     I I +  N   T  F+        ET  +L KI E
Sbjct: 327 ------VAENDGCPPIPRMTE----IEITELDNLARTVYFNSGKDSFKQETYEILNKIVE 376

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           ++     E  +I GHTD+         N +LS  RA +    L       ++ + I G+ 
Sbjct: 377 LIKGFPAEEFTIGGHTDSV---GSDSLNQKLSEKRANAVKSYLESK--LSNKFTAI-GYG 430

Query: 317 HHRLKIASDP--MNSANRRIDI-LVED 340
            +    ++      + NRR++I LV++
Sbjct: 431 ENEPIASNRTRKGRAQNRRVEIKLVKN 457


>gi|260431631|ref|ZP_05785602.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415459|gb|EEX08718.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 643

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283
            I  +       F+  S+    ++   L +I E+L       + I+GHTD+         
Sbjct: 487 RIVEVQSGGKITFEPGSATVSADSRDSLNQIAEILRECGPIRMEIQGHTDSQ---GREEM 543

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           N +LS  RA S    L    V     S + G+   +    +  +     NRRI+  +   
Sbjct: 544 NQQLSQARAQSILNELRARRVPTSSFSAV-GYGETQPIADNGTEEGREENRRIEFRLIRP 602

Query: 342 Q 342
           +
Sbjct: 603 E 603


>gi|188992991|ref|YP_001905001.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734751|emb|CAP52961.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris]
          Length = 431

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           G +I++ D     +FD   +   P+   VL  +   L   +   + +RGHTDA   +   
Sbjct: 314 GYVITLSD---RILFDFDKAAIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 367

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334
             N  LS  RA +    L   G ++   +   G+   +    +      +P     NRR+
Sbjct: 368 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 425

Query: 335 DILVED 340
           ++ +  
Sbjct: 426 ELFLRT 431


>gi|163732619|ref|ZP_02140064.1| OmpA family domain protein [Roseobacter litoralis Och 149]
 gi|161393979|gb|EDQ18303.1| OmpA family domain protein [Roseobacter litoralis Och 149]
          Length = 210

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L  D     V    T   +++S+       +F   S    P+    L  +   
Sbjct: 71  LDQQEAELRRDLGNDDVQITNTGDRLIVSL---PQDLLFATDSFSVRPDLQNDLYTVAGS 127

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L +     I + GHTD+      A  N +LS  RA S   +LM +GV+  R+  I G   
Sbjct: 128 LQNYPASTIQVIGHTDSD---GDAAYNQQLSERRAGSVAGILMNAGVTSSRLQTI-GRGE 183

Query: 318 HRLKIAS--DPMNSANRRIDILVED 340
            +   ++  +   + NRR++I++  
Sbjct: 184 SQPVASNLNETGKAQNRRVEIVILP 208


>gi|153806760|ref|ZP_01959428.1| hypothetical protein BACCAC_01032 [Bacteroides caccae ATCC 43185]
 gi|149131437|gb|EDM22643.1| hypothetical protein BACCAC_01032 [Bacteroides caccae ATCC 43185]
          Length = 238

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 66  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 175 AQSVSSYLLSCGVSTNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 221


>gi|50084108|ref|YP_045618.1| putative outer membrane protein [Acinetobacter sp. ADP1]
 gi|49530084|emb|CAG67796.1| putative outer membrane protein [Acinetobacter sp. ADP1]
          Length = 217

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  ++       FD + S   P     
Sbjct: 77  LDQKEKKLRQQMAGT-------GVEVNRNPDGSVGLVM--PGNITFDTNKSNIKPNFYST 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GVS  RI+
Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVANYLSGQGVSSSRIN 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+       ++        NRR++I + +RQ
Sbjct: 185 A-QGYGSSNPIASNATAQGREQNRRVEISIYERQ 217


>gi|262373228|ref|ZP_06066507.1| inner membrane lipoprotein yiaD [Acinetobacter junii SH205]
 gi|262313253|gb|EEY94338.1| inner membrane lipoprotein yiaD [Acinetobacter junii SH205]
          Length = 220

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 16/206 (7%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
              S +G D+   +  + ++             +       +         I    SGL 
Sbjct: 20  QTMSGQGNDIGGVSYDKAALGTLIGAAAGYGISKGNANSSSQNNRAAAIGAILGGASGLY 79

Query: 208 ADNIVKGVLFETTRTGILI--------SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            DN  K +  +   TG+ +         +I    +  FD + S   P     L K+ + L
Sbjct: 80  LDNKEKKLRAQMAGTGVEVGRNPDGSVQLI-MPGSITFDTNKSNIKPNFYGTLNKVAQTL 138

Query: 260 A-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           A  +   I + G+TD +        N  LS  RA S    L   GVS  RI    G    
Sbjct: 139 AEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLASQGVSSSRIDA-QGLGSS 194

Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342
               ++        NRR++I +  +Q
Sbjct: 195 NPIASNATAAGKEQNRRVEISIYAKQ 220


>gi|282853319|ref|ZP_06262656.1| OmpA family protein [Propionibacterium acnes J139]
 gi|282582772|gb|EFB88152.1| OmpA family protein [Propionibacterium acnes J139]
 gi|314922410|gb|EFS86241.1| OmpA family protein [Propionibacterium acnes HL001PA1]
 gi|314965447|gb|EFT09546.1| OmpA family protein [Propionibacterium acnes HL082PA2]
 gi|314982607|gb|EFT26699.1| OmpA family protein [Propionibacterium acnes HL110PA3]
 gi|315091130|gb|EFT63106.1| OmpA family protein [Propionibacterium acnes HL110PA4]
 gi|315094263|gb|EFT66239.1| OmpA family protein [Propionibacterium acnes HL060PA1]
 gi|327329241|gb|EGE71001.1| putative outer membrane protein A [Propionibacterium acnes
           HL103PA1]
          Length = 363

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD  
Sbjct: 243 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDN- 298

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 299 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVASNDSEAGRCLNR 354

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 355 RVTITVKE 362


>gi|115375674|ref|ZP_01462929.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821151|ref|YP_003953509.1| OmpA-like Outer membrane domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115367322|gb|EAU66302.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394223|gb|ADO71682.1| OmpA-like Outer membrane domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 380

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  + S     +  VL +  + L  + +  + I GH+D+        +N  LS  
Sbjct: 264 KEKLYFAWNQSTLEEASFPVLDEAVQALKDNPDFRVQIEGHSDS---SGADDNNQTLSEK 320

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           RA +    L+  G++++R+    GF+       ++ +     NRR++ +V
Sbjct: 321 RAKTVLDYLVAHGIAKERLVS-KGFSSSVPLDTNNTVAGRENNRRVEFVV 369


>gi|317009174|gb|ADU79754.1| flagellar motor protein MotB [Helicobacter pylori India7]
          Length = 257

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLAKTRFKSHYELAANRAYRVMKVLMQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|255013439|ref|ZP_05285565.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_7]
          Length = 213

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +TL        V           + ++     +  +F  +SS     + 
Sbjct: 59  KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 109

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+     L  + +  I I G TD +        N  LS  RA S Y  LM  GVS DR
Sbjct: 110 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 166

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +    G   H    ++D     S NRR++I++   Q
Sbjct: 167 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 201


>gi|114765063|ref|ZP_01444210.1| Possible outer membrane protein, OmpA family [Pelagibaca
           bermudensis HTCC2601]
 gi|114542610|gb|EAU45635.1| Possible outer membrane protein, OmpA family [Roseovarius sp.
           HTCC2601]
          Length = 452

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--R 278
           + + +I      +F  + +        ++  I +V+  +      + + GHTD+ P    
Sbjct: 328 LAVVVIQATQPEVFRSAKADINDVYSPLVGSIAQVIRDNIEFIGAVRVVGHTDSIPVQTS 387

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           N  R N  LS  RA +   +L   GV  + +S   G A       +      + NRR+++
Sbjct: 388 NPFRSNQGLSEARAKTIADMLRAQGVPAELVSS-EGRAAEDPIADNGTRDGRARNRRVEV 446

Query: 337 LVEDR 341
           +++ +
Sbjct: 447 ILQKK 451


>gi|330807377|ref|YP_004351839.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375485|gb|AEA66835.1| Putative lipoprotein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 167

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   FE T  G            +F        P +  ++++IG+ L  +  + + + 
Sbjct: 41  VLKQQGFELTDDGWA---FGLSGKVLFGSDVENLNPASTEIVERIGKALLGAGIQRVRVD 97

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA         N +LS+ RA S  +VL   G+ E+ + ++ G    +   ++D  + 
Sbjct: 98  GHTDA---SGSQAYNEQLSMRRAASVSKVLTAVGMREENV-QLRGLGSSKPVASNDTASG 153

Query: 330 A--NRRIDILV 338
              NRR+ I+V
Sbjct: 154 RTENRRVAIVV 164


>gi|260552490|ref|ZP_05825866.1| inner membrane lipoprotein yiaD [Acinetobacter sp. RUH2624]
 gi|260405297|gb|EEW98793.1| inner membrane lipoprotein yiaD [Acinetobacter sp. RUH2624]
          Length = 217

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L    KK+   ++G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + LA  +   I + G+TD +        N  LS  RA S    L   GVS  RI 
Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKIYLAGKGVSSSRID 184

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+        +   +    NRR++I +  +Q
Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217


>gi|113968495|ref|YP_732288.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113883179|gb|ABI37231.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 487

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  S   LPE   V++ +   L  + +    + GHTD    +     N  LS  RA +
Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             ++L  S G+   ++  + G   H      + +     NRR+++++  
Sbjct: 437 IVKLLTTSHGIPTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484


>gi|319778081|ref|YP_004134511.1| ompa/motb domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171800|gb|ADV15337.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 176

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-----IRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L +  + L      +S     + G+TDA+        N  LS  R
Sbjct: 74  FGLDSAELDATARAELDEFAKALKD--NRLSTFSFVVEGYTDAT---GTVHHNEGLSQRR 128

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           A S    L  SG+  DRI+ + G      + +S+P +  NRR+++ ++ +
Sbjct: 129 AKSVAAFLTASGIEPDRINAV-GMGEKNPR-SSNPYDPLNRRVEMRIKTQ 176


>gi|313674928|ref|YP_004052924.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941626|gb|ADR20816.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 679

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           K +L      G  + I    +   F+   +     +   L ++ ++++ +    I I GH
Sbjct: 556 KQLLMAPIEVGKTVII----DNIYFNFDKTTLKEASFPELDRLTDLMSQNPGIKIEIIGH 611

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNS 329
           TD+   +     N  LS  RA +  + L++ G++++R++   G           +D   +
Sbjct: 612 TDS---KGSDDYNLILSEGRAQAVMEYLLEKGIAQNRMT-FKGLGETAPISSNNTDEGRA 667

Query: 330 ANRRIDILVEDR 341
            NRR++  +  +
Sbjct: 668 ENRRVEFTIVAK 679


>gi|237707828|ref|ZP_04538309.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458156|gb|EEO63877.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 213

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            + +D EK + +  + +           + +++R + + +KI +  + L A + +  +  
Sbjct: 30  AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
              + G        ++  +F   S     E   +L  +  ++       I I GHTD   
Sbjct: 89  YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNI- 147

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335
                + N  LS +RA +    L  +G+  + I++   G++       S+   + NRR++
Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205

Query: 336 ILVEDRQ 342
           I + + +
Sbjct: 206 IFITNDE 212


>gi|126734944|ref|ZP_01750690.1| OmpA family domain protein [Roseobacter sp. CCS2]
 gi|126715499|gb|EBA12364.1| OmpA family domain protein [Roseobacter sp. CCS2]
          Length = 220

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 18/210 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +   Q+++ +      +  G  L   T+ + S+ +     L   +    +       L 
Sbjct: 25  PAGPNQNQNTQQGALIGAGAGAVLGALTNNDGSVRERNQAALIGAALGAGVGAGVGNSLD 84

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             A+ +   L           V        + + + +     +F  +S+         L+
Sbjct: 85  RQAEDLRRQLRN--------DVGVSNNGRDLRVVLSED---LLFATNSTQLSGTAQRELR 133

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +   L    +  +++ GHTD       A  N  LS  RA +   VL+  GVS +RI + 
Sbjct: 134 IVANSLQQYPDSTVNVIGHTDNV---GEASFNQGLSERRASAVSSVLVGGGVSRNRI-RT 189

Query: 313 SGFAHHRLKIA--SDPMNSANRRIDILVED 340
            G   +    +  +     ANRR++I++  
Sbjct: 190 IGAGENNPVASNLNAAGRQANRRVEIVITP 219


>gi|146300076|ref|YP_001194667.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146154494|gb|ABQ05348.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 727

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTE-VISIRGHT 272
           + T+  +   +  +  +  F    +        ET   L  I E+L +      +I GHT
Sbjct: 601 KVTKETLA-QLKMEAKSIFFTTGKATLSDAKMGETSGRLDAIKEILKNYPNAKFAINGHT 659

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D       A+ N +LS  RA     +L++ GV+   ++   G+   +      +    + 
Sbjct: 660 DNV---GNAKVNQKLSEQRAKVVMDLLIEKGVNPANLTS-KGYGASKPVKSNKTASGRAE 715

Query: 331 NRRIDIL 337
           NRR +I+
Sbjct: 716 NRRTEIV 722


>gi|86147507|ref|ZP_01065818.1| outer membrane protein [Vibrio sp. MED222]
 gi|218709202|ref|YP_002416823.1| putative outer membrane protein [Vibrio splendidus LGP32]
 gi|85834675|gb|EAQ52822.1| outer membrane protein [Vibrio sp. MED222]
 gi|218322221|emb|CAV18335.1| putative outer membrane protein [Vibrio splendidus LGP32]
          Length = 222

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 14/209 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  +++  G+    S      I           + +     +++  +           
Sbjct: 18  QATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGG 77

Query: 204 SGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            G   D     +  E   +G+ +        ++   N   FD  S          L+ + 
Sbjct: 78  IGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDSGSYALESSIHKTLRGVA 137

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L    +  + I GHTD++        N  LS  RA S    L+   V+  R     G 
Sbjct: 138 RILVEYPDTSLVIEGHTDST---GSESSNQVLSERRAESVRAFLISQDVAAGRAIA-RGN 193

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   ++     + NRR++I +   +
Sbjct: 194 GERYPLCDNNTSQGRACNRRVEIQILPLK 222


>gi|332300760|ref|YP_004442681.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177823|gb|AEE13513.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 296

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 225 LISIIDQR-NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282
            I  I++  N   F +  +    ET  VL  + +++  + +  + I GHT          
Sbjct: 185 RIEEIEKNFNAAKFVQGKADLTDETKFVLHDLAKLMEANPDLKLKIEGHTSEE---GDEA 241

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            N RLS +RA  A   L+  G+S DR+ +  G         ++P    NRR + +V
Sbjct: 242 FNQRLSEERAQVAVDFLISQGISADRL-QAEGKGSSEPIDPNNPE--VNRRTEFIV 294


>gi|166711089|ref|ZP_02242296.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 264

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 85/264 (32%), Gaps = 18/264 (6%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
            G+        + +        +  +    V     +  +     R       + +  Q 
Sbjct: 14  SGLITAFAVSAQVAAPATGGVGERPVIVEGVVPDQATKARILNNLRDTYGSARIVDRVQV 73

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--AKK 198
           E   +         K +        +   E N     +S + +   +R++   DL  A  
Sbjct: 74  ESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNEAQRQQVASDLSLASN 133

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
            S T++  +     +  + + T    +I          F   SS   P  + +L ++ E 
Sbjct: 134 TSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSRLTPLGMRILDEMVEK 184

Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           ++        I GHTD          N  LS  RA +    +++ G+   R++ + G   
Sbjct: 185 MSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQKGIDGARMN-VQGKGP 240

Query: 318 HRLK--IASDPMNSANRRIDILVE 339
            +     AS    + NRRI   ++
Sbjct: 241 DQPVADNASPDGRARNRRIQFKIQ 264


>gi|332968653|gb|EGK07706.1| OmpA family protein [Psychrobacter sp. 1501(2011)]
          Length = 217

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +++  +++   ++G        GV  +    G  I +I       F   S+   P     
Sbjct: 74  MENQKRQLEQQMAGT-------GVEVKHDGQG-NIDLI-MPGNITFAHDSTNINPSFYNT 124

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+   +    +  +++ GHTD+    N    N  LS  RA S    L+  GVS  RI 
Sbjct: 125 LDKLASTMNQYNQTTVTVMGHTDS--VGNPTY-NQGLSQRRAQSVAGYLVNRGVSGARI- 180

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           +  G+   +    +        NRR++I +   Q
Sbjct: 181 QTLGYGQSQPIADNSTEQGRMQNRRVEIKLNAPQ 214


>gi|323495404|ref|ZP_08100481.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546]
 gi|323310327|gb|EGA63514.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546]
          Length = 324

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F+ +S+   PE+   L ++ E L    +  + + G+TD+      A  N  +S  R
Sbjct: 211 GTGSFELNSTQLKPESASQLDELVEFLNTYPQAKVEVIGYTDS---SGAAEYNQVVSEKR 267

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L + G+   RI+   G   +    ++D       NRR++++V
Sbjct: 268 AESVASTLEQKGIDASRITA-RGEGENNPVASNDTREGRQQNRRVEVIV 315


>gi|157364674|ref|YP_001471441.1| OmpA/MotB domain-containing protein [Thermotoga lettingae TMO]
 gi|157315278|gb|ABV34377.1| OmpA/MotB domain protein [Thermotoga lettingae TMO]
          Length = 289

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +A+     +  +    G +I + D      F  +S+   PE   +L KIG  V+ H+T V
Sbjct: 88  IAEEYKGKITIQEKDEGTVIIMQDM---AFFYPASAKLTPEAKELLGKIGSIVIEHTTNV 144

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           + I G+ D  P    +I   NW LS  RA S  Q   +  + + R   +   A  R
Sbjct: 145 LQIYGYADDQPLSQDSIYVSNWHLSSARASSVVQFFTEE-LKKRR--SVERLADIR 197


>gi|160885976|ref|ZP_02066979.1| hypothetical protein BACOVA_03981 [Bacteroides ovatus ATCC 8483]
 gi|260170568|ref|ZP_05756980.1| OmpA family outer membrane protein [Bacteroides sp. D2]
 gi|315918915|ref|ZP_07915155.1| outer membrane protein [Bacteroides sp. D2]
 gi|156108789|gb|EDO10534.1| hypothetical protein BACOVA_03981 [Bacteroides ovatus ATCC 8483]
 gi|313692790|gb|EFS29625.1| outer membrane protein [Bacteroides sp. D2]
          Length = 238

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +    L  K+  +    AK+I       + DN     +  T  +GI           +F 
Sbjct: 66  AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114

Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291
             ++         L K    VL  + +  +SI G+TD   ++N       + N  LS +R
Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           A S    L+  GVS ++I  + G        ++D       NRR+++
Sbjct: 175 AQSVSSYLLSCGVSTNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 221


>gi|146329067|ref|YP_001209253.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
 gi|146232537|gb|ABQ13515.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
          Length = 298

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
            I +       +FD        +    ++ +   L       +++ GHTD++   +    
Sbjct: 188 RIEL-----KILFDNDKHFVKQQYYSEIETVAGYLRQYPNTTVTLEGHTDSN--ASEQY- 239

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
           N  LS  R  +   VL++  G+S  RIS + G+   +   +++       NRR+
Sbjct: 240 NINLSQRRVNAVRDVLIQHYGISPARISAV-GYGESQPIASNNTAAGRQQNRRV 292


>gi|77457293|ref|YP_346798.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77381296|gb|ABA72809.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1]
          Length = 264

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 22/237 (9%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           ST      ++   N   L  + Q+       T+D+    D      L+K    + +  L 
Sbjct: 21  STPPNPNLEQARTNYAGLQANPQASKVAALETKDASDYLDKADKAYLDKEDAAKVDQ-LA 79

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVA----------DNIVKGVLFETTRTGILI 226
            L+ +++   K+   L+     + +  +                +   +  + T  G L+
Sbjct: 80  YLTNQRVEVAKQTIALRTAENNLKNAAAQRAQARLDARDQQIKQLQDSLNAKQTDRGTLV 139

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           +  D     +F  + +      +V + K+ + L  + +  + + G+TD++     A  N 
Sbjct: 140 TFGD----VLFATNKADLKSSGLVNINKLAQFLQENPDRKVIVEGYTDST---GSASYNQ 192

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            LS  RA S    L+K GV   RI  + G+        +      + NRR+++ + +
Sbjct: 193 SLSERRATSVQVALIKMGVDPSRIV-VQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248


>gi|224371628|ref|YP_002605792.1| putative outer membrane protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694345|gb|ACN17628.1| putative outer membrane protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 350

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 16/301 (5%)

Query: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-GKNLMTASKGIFDEQNPPERSSQNKI 98
            +  L+ F ++M      +  +       F      +++   K    E +  ++   N  
Sbjct: 59  LLKTLICFIILMPFNVQAEPVSSSDSSDAFKLVERDSILDLVKSYETELDLTDKDILNFK 118

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
                 ++  +++  +     +  +  R   N   ++   + +     +       + L 
Sbjct: 119 MEREWLYLKISTIQDQNRLPPEVLKASRSALNQKIMTAQARKKQLMELIQIHGRDIEQLN 178

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           K  D     +              +     +K L++           L+   +       
Sbjct: 179 KMIDHAGGSDLSYPSKTAKSRSRGMPPSGVEKALEE----------SLIQAGLENHFEVA 228

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
               G+++         +FD             L ++   L   + ++ + G TD    R
Sbjct: 229 VEGPGLVLE---SVFPILFDPCKFALTDAHKRFLGRLAGFLKPYSVLVEVTGFTDYRKIR 285

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDIL 337
                N  LS  RA +  + L + G+    + KI+G   ++     S+     +RR DI 
Sbjct: 286 GTKMTNIELSAKRAGAVVRELRERGMKSS-VFKITGMGEYKKCLEKSERCRVLSRRADIT 344

Query: 338 V 338
           +
Sbjct: 345 I 345


>gi|254482387|ref|ZP_05095627.1| type I secretion outer membrane protein, TolC family, putative
           [marine gamma proteobacterium HTCC2148]
 gi|214037392|gb|EEB78059.1| type I secretion outer membrane protein, TolC family, putative
           [marine gamma proteobacterium HTCC2148]
          Length = 631

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS+        + +   VL  +     ++ GHTD+S       + W LS  RA + 
Sbjct: 526 FDFNSSVISSAYDSEIARSAGVLRENPGVRATVEGHTDSS--GENDYNQW-LSERRANAV 582

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
             +L+ + G+S +++  I G         +D     + NRR++++++ 
Sbjct: 583 RDMLINEHGISPEQLVAI-GRGEDYPIAGNDTAEDRARNRRVELVMDT 629


>gi|83814826|ref|YP_444492.1| OmpA family protein [Salinibacter ruber DSM 13855]
 gi|83756220|gb|ABC44333.1| OmpA family protein [Salinibacter ruber DSM 13855]
          Length = 230

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D  +     E    GI ++     +  +FD  SS    E    L +  E +    +  I 
Sbjct: 85  DEELDNADVERVGEGIKVTF---DSGILFDFDSSTLRAEARQNLTEFAESMQGFEDTKIL 141

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GHTDA         N +LS  RA SA + L+  GV   R++ + G        +++  
Sbjct: 142 VVGHTDAQ---GSEEYNQKLSDRRAESATRHLVDRGVDPSRLTSV-GRGETEPVASNETE 197

Query: 328 NSA--NRRIDILV 338
                NRR+++ +
Sbjct: 198 EGRQQNRRVEVAI 210


>gi|83647008|ref|YP_435443.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83635051|gb|ABC31018.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 493

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +++   ++ +   L  +  D++ + +  + T   +L           FD   ++   E+ 
Sbjct: 351 QQIILESEALEDDLITVDVDSLSRDI--DETGKALL-------YGVFFDTDKAVVKDESK 401

Query: 250 VVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
             L+ I  +L    E++  + GHTD +      + N  LS  RA +  + L+K  GV++ 
Sbjct: 402 PTLEAIAGLLKKRPELLLYVTGHTDDT---GAFQHNIELSSARAKAVVERLIKDYGVAQA 458

Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
           R++   G      +  +  D     NRR++++
Sbjct: 459 RLTP-YGVGPVAPEADNLSDAGKKRNRRVELI 489


>gi|13472168|ref|NP_103735.1| hypothetical protein mll2374 [Mesorhizobium loti MAFF303099]
 gi|14022913|dbj|BAB49521.1| mll2374 [Mesorhizobium loti MAFF303099]
          Length = 366

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+    ++  +L ++  V+       + + G+TD+         N  LS  RA + 
Sbjct: 261 FRPASARLDAKSRPLLTEVEGVVGKCPTLKVEVSGYTDSD---GSPEANKALSERRAQAV 317

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L+  GV   +IS  +G        A+D     + NRRI+
Sbjct: 318 AEALVAGGVPRQQISA-AGHGEENPVAANDTPKNKALNRRIE 358


>gi|254230148|ref|ZP_04923543.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262394952|ref|YP_003286806.1| outer membrane protein A [Vibrio sp. Ex25]
 gi|151937341|gb|EDN56204.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262338546|gb|ACY52341.1| outer membrane protein A precursor [Vibrio sp. Ex25]
          Length = 320

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  FD +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L++ G+   RI +  G   +    ++D       NRR++I+V
Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 311


>gi|254475344|ref|ZP_05088730.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214029587|gb|EEB70422.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 208

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E   +L +    +         + GHTDA         N  L L RA +A
Sbjct: 65  FAFDSAQLDAEARAILDQQAHWIRQFPEVRFRVYGHTDAV---GSNSYNKTLGLRRARAA 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +  F   +  I +      NRR
Sbjct: 122 VSYLVSRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 159


>gi|323357271|ref|YP_004223667.1| outer membrane protein [Microbacterium testaceum StLB037]
 gi|323273642|dbj|BAJ73787.1| outer membrane protein [Microbacterium testaceum StLB037]
          Length = 165

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD  S+   P+   VL  +  +L       + + GHTDA        +N  LS  R
Sbjct: 52  DAVLFDFDSAEIRPDAAGVLDSLAALLTQGAVPAATVSGHTDAI---GTDAENQVLSERR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRIDILV 338
           A +    L + G   D      G+   R   A++            NRR++ILV
Sbjct: 109 AQAVVDALRRRGTQTD--WTAEGYGESRPVAANELDGVDNPAGRQLNRRVEILV 160


>gi|255036344|ref|YP_003086965.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254949100|gb|ACT93800.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 502

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +I    +   L K+ E+L   T   I + GHTDA    + A +   LS  R  +A
Sbjct: 385 FDTDKAIIRNASKETLSKVVELLNMRTNCRIVLVGHTDAR--ASDAYNV-SLSRRRVDAA 441

Query: 296 YQVLMKSGV-SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            + L+++G+    RI     +  +R    +       +NRR++I +  
Sbjct: 442 KRFLVRAGLTDPSRIIA-EYYGEYRPIAENTTVEGLQSNRRVEIKILP 488


>gi|148546044|ref|YP_001266146.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148510102|gb|ABQ76962.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 247

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+   P     L  +       +   I + G T
Sbjct: 107 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNLAGSFKQFNQNTIEVVGFT 165

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
           D++      + N  LS  RA +    L   GV   RI  + G    +   ++   N  + 
Sbjct: 166 DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-SVRGMGPDQPIASNADANGRAQ 221

Query: 331 NRRIDILVED 340
           NRR+++ ++ 
Sbjct: 222 NRRVEVNLKP 231


>gi|53718641|ref|YP_107627.1| OmpA family transmembrane protein [Burkholderia pseudomallei
           K96243]
 gi|53725212|ref|YP_102481.1| ompA family protein [Burkholderia mallei ATCC 23344]
 gi|67639751|ref|ZP_00438587.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|121600283|ref|YP_993611.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124385832|ref|YP_001028928.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126440263|ref|YP_001058104.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126449467|ref|YP_001081159.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|126452105|ref|YP_001065339.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|134281074|ref|ZP_01767783.1| OmpA family protein [Burkholderia pseudomallei 305]
 gi|167003046|ref|ZP_02268836.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|167718574|ref|ZP_02401810.1| ompA family protein [Burkholderia pseudomallei DM98]
 gi|167814738|ref|ZP_02446418.1| ompA family protein [Burkholderia pseudomallei 91]
 gi|167901748|ref|ZP_02488953.1| ompA family protein [Burkholderia pseudomallei NCTC 13177]
 gi|217419903|ref|ZP_03451409.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|226194470|ref|ZP_03790068.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237811323|ref|YP_002895774.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|242316655|ref|ZP_04815671.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254177848|ref|ZP_04884503.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|254190801|ref|ZP_04897308.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196800|ref|ZP_04903224.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|254261713|ref|ZP_04952767.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254298274|ref|ZP_04965726.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|254357860|ref|ZP_04974133.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|52209055|emb|CAH34995.1| putative OmpA family transmembrane protein [Burkholderia
           pseudomallei K96243]
 gi|52428635|gb|AAU49228.1| ompA family protein [Burkholderia mallei ATCC 23344]
 gi|121229093|gb|ABM51611.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124293852|gb|ABN03121.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126219756|gb|ABN83262.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126225747|gb|ABN89287.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|126242337|gb|ABO05430.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|134247380|gb|EBA47465.1| OmpA family protein [Burkholderia pseudomallei 305]
 gi|148026987|gb|EDK85008.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|157808098|gb|EDO85268.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|157938476|gb|EDO94146.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698887|gb|EDP88857.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|169653543|gb|EDS86236.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|217397207|gb|EEC37223.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|225933555|gb|EEH29544.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503911|gb|ACQ96229.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|238520349|gb|EEP83810.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|242139894|gb|EES26296.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|243061351|gb|EES43537.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254220402|gb|EET09786.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 215

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213


>gi|206560984|ref|YP_002231749.1| putative OmpA family membrane protein [Burkholderia cenocepacia
           J2315]
 gi|198037026|emb|CAR52947.1| putative OmpA family membrane protein [Burkholderia cenocepacia
           J2315]
          Length = 215

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     SI G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVNGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQ 212


>gi|4530365|gb|AAD22005.1| major outer membrane protein [Pseudomonas fluorescens]
          Length = 343

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 293

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 294 KQVLTNQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 335


>gi|148653943|ref|YP_001281036.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573027|gb|ABQ95086.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1]
          Length = 218

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +++  K++   ++G        GV          I ++       F   S+         
Sbjct: 74  MENQEKQLKQQMAGT-------GVEVNRNPNTGNIDLV-MPGNITFAHDSTNINGSFYNT 125

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+   +    +  +++ GHTD+    N +  N  LS  RA +    L++ GVS +RI 
Sbjct: 126 LDKLASTMVQYGDTTVNVMGHTDS--VGNPSY-NQGLSERRAQAVASYLIQRGVSSNRI- 181

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           +  G+  ++   ++   +    NRR++I +   Q
Sbjct: 182 RTMGYGQNQPVASNSTESGRLQNRRVEIQIVAPQ 215


>gi|51702435|gb|AAU08790.1| OmpA [Bordetella ansorpii]
          Length = 178

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++   +        I  GHTD+    + A  N +LS  RA S
Sbjct: 72  FFDFDKSTLKPEGRQLLDQVASQVNTINLETLIAVGHTDS--IGSDAY-NQKLSERRAAS 128

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +   ++      + NRR++I +V  R+
Sbjct: 129 VKSYLVSKGIDANRIY-TEGKGEKQPVASNSTREGRAKNRRVEIEIVGTRR 178


>gi|261837954|gb|ACX97720.1| flagellar motor rotation protein [Helicobacter pylori 51]
          Length = 255

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VLM+ GV+
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLAKTRFKSHYELAANRAYRVMKVLMQYGVN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|257456150|ref|ZP_05621347.1| OmpA family protein [Treponema vincentii ATCC 35580]
 gi|257446236|gb|EEV21282.1| OmpA family protein [Treponema vincentii ATCC 35580]
          Length = 1355

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 13/146 (8%)

Query: 203  LSGLVADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            L+ +V   +   VL       + I   SII ++N   FD      +   I VL +I E+L
Sbjct: 1211 LTSVVKGYVPIDVLVIRDGDKLKIAVPSIIFRKNAADFDGLEQNVVDRNIKVLTRIAEIL 1270

Query: 260  AHST-EVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSGVSEDRISKISG 314
                   + + GH  A+      R+       LS  RA +  + L++ GVS  R+S + G
Sbjct: 1271 NKFPEYKVQVEGH--ANNVSGTEREEKEDLIPLSAARADAVRRFLIERGVSRSRLSSV-G 1327

Query: 315  FAHHRLKIASDPMNS--ANRRIDILV 338
                +   +    ++   NRR++ ++
Sbjct: 1328 IGGTKPIASLSDKDNWWKNRRVEFVL 1353


>gi|239818113|ref|YP_002947023.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239804690|gb|ACS21757.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 187

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            RL  L  ++ S+  G        GV+ E T    L  ++   N   FD   +       
Sbjct: 45  ARLAALKTELESSTKGT-------GVVIEQTADNQLHLVV--PNELSFDVGRANVKRNLA 95

Query: 250 VVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL K+ E + + +   + + GHTD +        N RLS+ RA S    L+  GVS   
Sbjct: 96  QVLDKVAEGLRSAAAASVRVVGHTDNT---GSEEGNERLSVSRADSVRNHLVSRGVSTTA 152

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           I+   G          A+    + NRR++I V ++
Sbjct: 153 IT-TDGRGSREPIADNATPAGRAQNRRVEIFVAEK 186


>gi|254457130|ref|ZP_05070558.1| OmpA/MotB [Campylobacterales bacterium GD 1]
 gi|207085922|gb|EDZ63206.1| OmpA/MotB [Campylobacterales bacterium GD 1]
          Length = 407

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S +    +  +++K  + L + +     I G+TD+   +  A  N +LS  RA + 
Sbjct: 304 FENNSDVVNTSSYDIIEKYADFLNNYSSYSAKIIGYTDS---KGSANYNQKLSEKRANAI 360

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
             +L++ GV  DR+S + G         +      + NRRI+
Sbjct: 361 KSMLLEKGVPADRLSSV-GMGESNPVADNSTKEGRAQNRRIE 401


>gi|167580182|ref|ZP_02373056.1| ompA family protein [Burkholderia thailandensis TXDOH]
 gi|257139912|ref|ZP_05588174.1| ompA family protein [Burkholderia thailandensis E264]
          Length = 215

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213


>gi|317153907|ref|YP_004121955.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944158|gb|ADU63209.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 380

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD       PE+  +L  +GE L         I + GHTD+   R     N  LS  RA 
Sbjct: 275 FDFDKDTIRPESYPLLDALGEALNTQQLKGRSIIVGGHTDS---RGDDAYNLALSKRRAN 331

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
           +    L+   GV++D I  + GF   R   A     +   NRR++I
Sbjct: 332 AVKAYLVNKWGVAQDLIEAV-GFGKTRPIAAGSTTEAMRKNRRVEI 376


>gi|149774748|gb|ABR28420.1| OmpA/MotB [Delftia tsuruhatensis]
          Length = 219

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+         N +LS+ RA +
Sbjct: 111 FFDFDKSVLKPEGKAKLDDLASKVKGINLEVVIAVGHTDSV---GSDAYNQKLSVRRAEA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 212


>gi|160900150|ref|YP_001565732.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|151500323|gb|ABS12102.1| OmpA/MotB [Delftia acidovorans]
 gi|160365734|gb|ABX37347.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 219

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+         N +LS+ RA +
Sbjct: 111 FFDFDKSVLKPEGKAKLDDLASKVKGINLEVVIAVGHTDSV---GSDAYNQKLSVRRAEA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 212


>gi|330808432|ref|YP_004352894.1| Outer membrane porin F [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376540|gb|AEA67890.1| Outer membrane porin F [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 344

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 295 KQVLTNQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|332975480|gb|EGK12371.1| OmpA/OmpF family outer membrane protein OprF [Psychrobacter sp.
           1501(2011)]
          Length = 318

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPET 248
           + LQ L+++          D        ET      + +        +FD  S+   P  
Sbjct: 166 QLLQGLSEQTHQKNRVEAKDCTTITQETETVEPPARVEVNTPITLDVLFDFDSAKIKPTY 225

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSE 306
              L+++ + L+ +      + GHTD++     A  N  LS  RA +  + L+ K G+  
Sbjct: 226 QQRLREVAQFLSANANTKAILEGHTDST---GPASYNLTLSQARAEAVKKELVNKHGIDP 282

Query: 307 DRISKISGFAHHRLKIASDPMNSA--NRRI 334
           +R++   G+   +    +  +     NRR+
Sbjct: 283 NRLT-TQGYGESKPIDNNSTVQGRQNNRRV 311


>gi|167909987|ref|ZP_02497078.1| ompA family protein [Burkholderia pseudomallei 112]
 gi|254199385|ref|ZP_04905751.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254205699|ref|ZP_04912051.1| OmpA family protein [Burkholderia mallei JHU]
 gi|147748981|gb|EDK56055.1| OmpA family protein [Burkholderia mallei FMH]
 gi|147753142|gb|EDK60207.1| OmpA family protein [Burkholderia mallei JHU]
          Length = 207

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 100 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 156

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 157 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 205


>gi|325286633|ref|YP_004262423.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322087|gb|ADY29552.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 235

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 17/175 (9%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           E   +          +    R+   A+KI   + G            E    GI+++  D
Sbjct: 62  ELGAVIGGVVGGGAGVLIGNRMDKQAQKIEEEIPGA---------QVERVDDGIVVT-FD 111

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           + +   FD +       +   L K+  V     +  I + GHTD+      A  N  LS 
Sbjct: 112 ENSGVFFDTAKYNINGASKTSLDKLANVFIEYPDTNILVVGHTDS---SGAADYNMTLSK 168

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342
           +RA +    L   G++  R +    F   +     ++    + NRR+++ +   +
Sbjct: 169 NRANAVTSYLTAKGIAASRFT-TEWFGEEKPTHDNSTPEGRAKNRRVNVAILPNE 222


>gi|34541639|ref|NP_906118.1| lipoprotein PG3 [Porphyromonas gingivalis W83]
 gi|5081699|gb|AAD39495.1|AF145799_1 immunogenic 23 kDa lipoprotein PG3 [Porphyromonas gingivalis]
 gi|34397957|gb|AAQ67017.1| lipoprotein PG3 [Porphyromonas gingivalis W83]
          Length = 223

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +          V     +T   G  I ++   +  +F  +SS   P + 
Sbjct: 70  KKMDKQKKELEAA---------VPDATIQTVNDGEAI-LVTFDSGILFATNSSTLSPNSR 119

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K    +  + +  I I GHTD +      + N  LS  RA S Y  L   GVS  R
Sbjct: 120 TALTKFAANMNKNPDTDIRIVGHTDNT---GSDKINDPLSERRAASVYSFLNSQGVSMSR 176

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           ++   G   H     +      SANRR+++ +  
Sbjct: 177 MAA-EGRGSHEPVADNSTVAGRSANRRVEVYILP 209


>gi|77456921|ref|YP_346426.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77380924|gb|ABA72437.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1]
          Length = 166

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   FE T  G            +F         ++  ++++IG+ L     E + + 
Sbjct: 40  VLKQQGFELTDDGWE---FGLSGKVLFGSDVESLNKQSTEIVERIGKALLGVGIERVRVD 96

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA         N +LSL RA S   VL   G+ ++ I ++ G        ++D    
Sbjct: 97  GHTDA---SGKETYNQQLSLRRAKSVSNVLTSVGMKQENI-QLQGLGSREPVASNDTAAG 152

Query: 330 A--NRRIDILV 338
              NRR+ I+V
Sbjct: 153 RTENRRVSIVV 163


>gi|313497139|gb|ADR58505.1| OmpA/MotB domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 239

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+   P     L  +       +   I + G T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNLAGSFKQFNQNTIEVVGFT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
           D++      + N  LS  RA +    L   GV   RI  + G    +   ++   N  + 
Sbjct: 158 DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-SVRGMGPDQPIASNADANGRAQ 213

Query: 331 NRRIDILVED 340
           NRR+++ ++ 
Sbjct: 214 NRRVEVNLKP 223


>gi|149917241|ref|ZP_01905740.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149821848|gb|EDM81242.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 188

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 14/153 (9%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + AK I +T      +        E T   I+I          F+  ++     +  +L 
Sbjct: 20  ESAKVIEATELPPPPEPPKVDARVEVTDDKIVI-----HEKIAFEYDAAKIQRVSHDLLA 74

Query: 254 KIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310
           ++ +V+  +  +  I + GH  A      A  N  LS  RA +    L+ K GV E R+ 
Sbjct: 75  EVAQVILDNPRIELIRVEGHASAE---GEADHNLELSQRRAEAVRAHLVKKGGVPEARLE 131

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
              GF   R    ++       NRR++ ++  +
Sbjct: 132 A-EGFGEDRPIADNETEEGRGQNRRVEFVIVRQ 163


>gi|71282150|ref|YP_271418.1| ompA family protein [Colwellia psychrerythraea 34H]
 gi|71147890|gb|AAZ28363.1| ompA family protein [Colwellia psychrerythraea 34H]
          Length = 367

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + ++   +   ++ K+ + +    +  ++I+GH+ A   +  A  N  LS  RA + 
Sbjct: 256 FDSNKAVVKEKYKPIMVKVAKFMEAYPDLSLTIKGHSSA---KGSAAYNQTLSAKRAQAV 312

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
             VL+   GV   R++ I G+    L    +   +   NRRI+
Sbjct: 313 VDVLINDFGVDASRLNSI-GYGESELLNTDNTAAAHEQNRRIE 354


>gi|330831642|ref|YP_004394594.1| outer membrane lipoprotein [Aeromonas veronii B565]
 gi|328806778|gb|AEB51977.1| Outer membrane lipoprotein [Aeromonas veronii B565]
          Length = 218

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++G     TR G  + I++  N   FD SSS         L  +  V+A  
Sbjct: 81  VQEAKLREKLQGTGVSVTRNGNEL-ILNMPNNVTFDSSSSQLKAAGANTLSGVAMVVAEF 139

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ GHTD++  R++   N +LS DRA +    L+  GV+  RI   +G    +  
Sbjct: 140 DKTRLNVVGHTDSTGSRDL---NMKLSRDRADAVAAQLIGQGVAGSRI-STTGVGPDQPV 195

Query: 322 IASDPMN--SANRRIDILVED 340
             +      + NRR+ I +  
Sbjct: 196 ATNSTAAGKAQNRRVTITLTP 216


>gi|255038851|ref|YP_003089472.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254951607|gb|ACT96307.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 673

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
           I K +     + G  I + +     MF +SS+   P ++V L +I E +       I + 
Sbjct: 548 IRKNIYLHPIKAGQQIRLSNT----MFSQSSAEVTPASLVELDRIAETMQTYPTMEILLE 603

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328
           GHTD        + N +LS DR     + L+  G+   RI  K  G A       ++   
Sbjct: 604 GHTDNQ---GEVQKNVKLSADRVEQVKKYLLSKGIDGRRIQTKAWGPARPIASNLTEQTR 660

Query: 329 SANRRIDILVE 339
             NRR++  + 
Sbjct: 661 QKNRRVEFTIL 671


>gi|126730426|ref|ZP_01746237.1| OmpA domain protein [Sagittula stellata E-37]
 gi|126709159|gb|EBA08214.1| OmpA domain protein [Sagittula stellata E-37]
          Length = 718

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 29/278 (10%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS---EH 142
           E   PE  + + +     E   +   D     + + K   R          +  S     
Sbjct: 328 ETTLPEVFALHAVLPKAPEQDAEGPPDFTATLSPEGKVQLRGRLTTEIARQTADSYARAR 387

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             +     + +  D   S    +++   E   +       +         Q   ++ S+ 
Sbjct: 388 FGSEAVYTAARLADNLPSDWPVRTLAGLEALSMLANGSITVTPDDVIVTGQTGNQEASAQ 447

Query: 203 LSGLVADNIVKGVLFET---------------TRT---GILISIIDQRNTPMFDKSSSIP 244
           ++ L+A  + +   F+                T     G++  ++  R    F+  S+  
Sbjct: 448 IATLLAGKLGENATFDINVTYVERLDPTLGIPTPEQCVGMIKEVVGTRKIN-FEPGSATL 506

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                 +L ++ ++L    +  + I GHTD+         N +LS DRA S    L    
Sbjct: 507 DISARDILDELADLLKTCGDIPLEIGGHTDSQ---GRESMNQQLSRDRAQSVLDALRGRR 563

Query: 304 VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           V   R+ ++ G+   +    +D      ANRRI+  + 
Sbjct: 564 V-PVRMYEVKGYGEAQPIADNDTEEGREANRRIEFKLL 600


>gi|167031827|ref|YP_001667058.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166858315|gb|ABY96722.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 240

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 13/212 (6%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                  Q +   ++    + K   L            + N                   
Sbjct: 22  SQNPYDNQGQAQGSTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAG 81

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
               A K  + L   +A         E  R G  I +I       F   S+   P     
Sbjct: 82  YGYYADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSP 135

Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +       +   I + G TD++      + N  LS  RA +    L   GV   RI 
Sbjct: 136 LNNLAGSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI- 191

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVED 340
            + G    +   ++   N  + NRR+++ ++ 
Sbjct: 192 SVRGMGPDQPIASNADANGRAQNRRVEVNLKP 223


>gi|325287332|ref|YP_004263122.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322786|gb|ADY30251.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 647

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS    E+   L K+   +L + T VI +  HTD++   +   + W LS  RA S 
Sbjct: 539 FDTNSSYLRVESYPDLDKVANYMLENPTVVIEVGAHTDST--ESDTYNLW-LSNRRAKST 595

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
            + L+  GV   RI+ I GF   +L          S+  ++ NRR + ++ ++
Sbjct: 596 VKYLVSKGVDASRITGI-GFGESQLLNKCKNGVKCSNEEHAVNRRSEFIIINK 647


>gi|244538668|dbj|BAH82822.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           YF     K   LA K+ +     AK+I  +        ++  +  E T     I +    
Sbjct: 171 YFGNKTPKAPQLATKQIEEKPQ-AKQIDKSCPEPRKGALLDHIGCEKT-----IML---- 220

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDR 291
               F        PE    +Q++G+VL  + +  +I  GHTD +        N +LSL+R
Sbjct: 221 -EGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLER 276

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           A +  + L K+GV++++I+   G+   +   ++D     + NRR++
Sbjct: 277 AKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321


>gi|325121508|gb|ADY81031.1| hypothetical protein BDGL_000445 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 475

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    +   +L +   +L       +++ GHTD++     A  N  LS  RA + 
Sbjct: 373 FASGSSDIPADNKAILDQAATLLNKVNGVKLNVGGHTDST---GNAAANKALSQRRAQAV 429

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L   GV   ++    G    +    +        NRRI+  V
Sbjct: 430 VDYLTSKGVEGSKLVA-QGHGSDQPVAENTTEEGRFKNRRIEFSV 473


>gi|163855060|ref|YP_001629358.1| putative lipoprotein [Bordetella petrii DSM 12804]
 gi|163258788|emb|CAP41087.1| putative lipoprotein [Bordetella petrii]
          Length = 215

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           + E     + ++I    +   FD   ++  P  + VL  +   L    E    + GHTD+
Sbjct: 92  VVEMPDGSLKVNI---PSNVSFDTDKAVLKPALLPVLDSVARALNQHPELRAKVVGHTDS 148

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332
           +     A  N  LS +RA S    L K GV+  R++ I G A        A+    +ANR
Sbjct: 149 T---GSAAHNQTLSENRARSVTDYLGKQGVAPARMT-IEGRAARDPIGDNATAEGRAANR 204

Query: 333 RIDILV 338
           R+++ +
Sbjct: 205 RVEVYL 210


>gi|153871249|ref|ZP_02000470.1| outer membrane protein OprF [Beggiatoa sp. PS]
 gi|152072284|gb|EDN69529.1| outer membrane protein OprF [Beggiatoa sp. PS]
          Length = 188

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDR 291
              F+  S+    E    L +  + L    +  +I I GHTD     +    N  LS  R
Sbjct: 80  RVYFESDSTRIKAEFYPWLHQYAKTLQSELAETMIEIGGHTDN--IGSDEY-NKDLSQRR 136

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           A +   +L+    +S +R+  + G+  ++    ++     + NRR+++ +  +
Sbjct: 137 AQAVKNILLSKYKISANRLI-VKGYGENQPLDVNENREGRAINRRVELKIVPK 188


>gi|71281842|ref|YP_271675.1| ompA family protein [Colwellia psychrerythraea 34H]
 gi|71147582|gb|AAZ28055.1| ompA family protein [Colwellia psychrerythraea 34H]
          Length = 222

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++       R G  I++I       F  SSS        VL  +  VL    +  + + G
Sbjct: 92  LRDSGVSIQREGDKINLI-MPGNITFATSSSNINTNFTGVLNSVALVLEEYNKTLVVVSG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           HTD+      A+ N +LS +RA S    L    +  +R+  + GF   +    +      
Sbjct: 151 HTDS---SGSAQYNQKLSEERAGSVANYLRGQKILSERLE-VVGFGEAQPVADNQSAGGR 206

Query: 331 --NRRIDILVED 340
             NRR++I +  
Sbjct: 207 ELNRRVEITLLP 218


>gi|33592100|ref|NP_879744.1| outer membrane protein A precursor [Bordetella pertussis Tohama I]
 gi|33571744|emb|CAE41245.1| outer membrane protein A precursor [Bordetella pertussis Tohama I]
 gi|332381516|gb|AEE66363.1| outer membrane protein A precursor [Bordetella pertussis CS]
          Length = 193

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+      A  N +LS  RA +
Sbjct: 86  FFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAA 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +   ++      + NRR++I +V  R+
Sbjct: 143 VKTYLVSKGIDPNRIY-TEGKGELQPIASNKTREGRAQNRRVEIEIVGSRK 192


>gi|255532299|ref|YP_003092671.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255345283|gb|ACU04609.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 175

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 14/160 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKSSSI 243
           K KK L    +   +  +     NI + +     E T  GI  +   +    +F  +SS 
Sbjct: 20  KTKKILAKSPETAETKSTDNEIFNIQRELPGDQVERTAAGIRFTFSSE---ILFPTNSSY 76

Query: 244 PLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
              ++   +  + +V+ +  +   + + GH+D +       + W LS  RA S    L+ 
Sbjct: 77  LNEKSKSRIDDVAKVIRNKYADRKVLVEGHSDKT--GTPEYNLW-LSEKRAASVKTYLVS 133

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            G+ E  I K SG    R    +        NRR+++ V 
Sbjct: 134 LGIPEANI-KTSGLGDTRPVADNKTKEGRLINRRVEVTVL 172


>gi|253572950|ref|ZP_04850347.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254885124|ref|ZP_05257834.1| lipoprotein PG3 [Bacteroides sp. 4_3_47FAA]
 gi|251837477|gb|EES65571.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254837917|gb|EET18226.1| lipoprotein PG3 [Bacteroides sp. 4_3_47FAA]
          Length = 213

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            + +D EK + +  + +           + +++R + + +KI +  + L A + +  +  
Sbjct: 30  AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
              + G        ++  +F   S     E   +L  +  ++       I I GHTD   
Sbjct: 89  YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSNLCNIITEIPNTKIKIIGHTDNI- 147

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335
                + N  LS +RA +    L  +G+  + I++   G++       S+   + NRR++
Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205

Query: 336 ILVEDRQ 342
           I + + +
Sbjct: 206 IFITNDE 212


>gi|238028341|ref|YP_002912572.1| OmpA family protein [Burkholderia glumae BGR1]
 gi|237877535|gb|ACR29868.1| OmpA family protein [Burkholderia glumae BGR1]
          Length = 219

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L ++   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAITPAFAPLLNELATSLNQNPQITASVVGYTDST---GSAAHNLTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L++ GV+  R+S   G          A+D   + NRR++I +
Sbjct: 165 VTALVQRGVAGSRLSA-QGMGASNPVADNATDAGRAQNRRVEIYL 208


>gi|33597667|ref|NP_885310.1| outer membrane protein A precursor [Bordetella parapertussis 12822]
 gi|33602447|ref|NP_890007.1| outer membrane protein A precursor [Bordetella bronchiseptica RB50]
 gi|33574095|emb|CAE38420.1| outer membrane protein A precursor [Bordetella parapertussis]
 gi|33576886|emb|CAE33966.1| outer membrane protein A precursor [Bordetella bronchiseptica RB50]
          Length = 193

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+      A  N +LS  RA +
Sbjct: 86  FFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAA 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G    +   ++      + NRR++I +V  R+
Sbjct: 143 VKTYLVSKGIDPNRIY-TEGKGELQPIASNKTREGRAQNRRVEIEIVGSRK 192


>gi|260905077|ref|ZP_05913399.1| flagellar motor protein [Brevibacterium linens BL2]
          Length = 228

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 39/203 (19%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           +    +K    + +     + K       RK  L ++ K + S           +G+   
Sbjct: 18  QLMQAQKDFQAQTDDLSEQIEKSSKAENIRKSMLDEIQKDLES-----------EGIEVI 66

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIR 269
            ++ G +ISI    +   FD  S     +       IG ++A   E          + + 
Sbjct: 67  VSQNGSVISI--PNDLLGFDSGSYDIKEKYEAKSLTIGTIIAREIEEHDGEEFLDTVFVE 124

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR------------ISKISGFA 316
           GHTD + ++ +    NW LS  RA S ++ L +  +  D+            +  +SG++
Sbjct: 125 GHTDNAKYQGLEGTGNWGLSTFRAISLWK-LWEEELPSDQQLETMQGPEGQPLFSVSGYS 183

Query: 317 HHRLKIAS---DPMNSANRRIDI 336
             R   A+   D   +ANRRIDI
Sbjct: 184 DTRPVNANQSTDLGAAANRRIDI 206


>gi|72161966|ref|YP_289623.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Thermobifida fusca YX]
 gi|71915698|gb|AAZ55600.1| similar to Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Thermobifida
           fusca YX]
          Length = 521

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            ++T    +  D  +      +  +  +   PP + EK+    R+    + A  +   + 
Sbjct: 163 GAMTGIPVQDVDEERPEPENPNGGQHLSVDQPPAAGEKLTFDNRRP--DEDAVAVEGWVE 220

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             V   I       TT T   IS+       MF+   +   PE   V+++  E L  + +
Sbjct: 221 SFVDSEIASVTRDGTTET---ISLHSD---VMFEFDRADLTPEAEAVVRRAAETLERNVD 274

Query: 265 V----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                I I GHTD       A ++  LS+ RA +   +L++  +       + G      
Sbjct: 275 PDHPEIIIIGHTDG--IGTDAYND-DLSVRRAETVRNLLVEE-MGTGYTYVVEGRGSREP 330

Query: 321 KIA-----SDPMNSANRRID 335
                    +   + NRR++
Sbjct: 331 IAREGGPDDEQARARNRRVE 350


>gi|308048148|ref|YP_003911714.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307630338|gb|ADN74640.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 219

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             + G      R G  I ++   N+  FD  S       I  L  +  V++   E  + I
Sbjct: 89  EKLAGTGVSVKRDGDHIQLV-MPNSLTFDVGSDRLKMPAINALSGVAMVVSEFDETNLQI 147

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD++  R++   N RLS +RA +    L++  +S  R+    G    R   ++  + 
Sbjct: 148 TGHTDSTGGRDL---NMRLSRERAEAVASELLRQSISATRM-STYGAGPDRPIASNQSEA 203

Query: 327 MNSANRRIDILVEDR 341
             + NRR++I++  R
Sbjct: 204 GRAENRRVEIVLTPR 218


>gi|300727039|ref|ZP_07060458.1| immunogenic 23 kDa lipoprotein PG3 [Prevotella bryantii B14]
 gi|299775583|gb|EFI72174.1| immunogenic 23 kDa lipoprotein PG3 [Prevotella bryantii B14]
          Length = 229

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 205 GLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +A  +    + E T   G+    +   +   FD   S         L K    L +  
Sbjct: 82  AEIAQQVSNAKVEEVTDANGLKAIKVTFDSGLQFDLGKSTLKSAAKNDLAKFASTLKNDP 141

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I+G+TDA+        N  LS  RA +    L+  GVS  +   ++G+A     +
Sbjct: 142 MLAVDIQGYTDAT---GGDAINLPLSDKRAKAVSSYLVSQGVSSSQFKNVAGYASANPIV 198

Query: 323 ASDPMNSANRRIDILV 338
            +  +   NRR+++ +
Sbjct: 199 -NATVAPENRRVEVYL 213


>gi|244538673|dbj|BAH82826.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               P   +     ++ K +    AK+I  +        ++  +  E T     I +   
Sbjct: 173 GNKTPKAPQLATNQIEEKPQ----AKQIDKSCPEPRKGALLDHIGCEKT-----IML--- 220

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
                F        PE    +Q++G+VL  + +  +I  GHTD +        N +LSL+
Sbjct: 221 --EGHFGFDQITVNPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLE 275

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           RA +  + L K+GV++++I+   G+   +   ++D     + NRR++
Sbjct: 276 RAKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321


>gi|303240559|ref|ZP_07327075.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591961|gb|EFL61693.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2]
          Length = 556

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           + ++  K+     +  +  N  +    +                  +D   +    E+I 
Sbjct: 417 QAEEKKKEFKQQDAQSIEKNTERVAKVDIPP-------------VYYDSGKATVKAESIA 463

Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           VL ++ E+L+      + I  HTD         +N +LS DRA    + L++ GV E RI
Sbjct: 464 VLNQVKEMLSQFPEYYLIIDAHTDTV---GNNENNLKLSKDRADEVKKYLVQKGVDEKRI 520

Query: 310 SKISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343
               G+   R  +  +      + NRR + ++    G
Sbjct: 521 IA-RGWGEDRPIVPKESTEGDKAKNRRTEFILTREIG 556


>gi|134095751|ref|YP_001100826.1| putative outer membrane protein 3a (II*;G;d) [Herminiimonas
           arsenicoxydans]
 gi|133739654|emb|CAL62705.1| Putative outer membrane protein OmpA [Herminiimonas arsenicoxydans]
          Length = 205

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            ++  P+    L  +   L      + I  GHTD+    + A  N +LS+ RA +    L
Sbjct: 104 KAVLKPDGKAKLDDLASKLKDLNLEVIIAVGHTDS--IGSDAY-NQKLSIRRAEAVKGYL 160

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342
           +  G+   R+    G    +      +    + NRR++I +V  R+
Sbjct: 161 VGKGIDAKRVY-TEGKGEKQPVATNKTAAGRAQNRRVEIEVVGTRK 205


>gi|221199341|ref|ZP_03572385.1| ompA family protein [Burkholderia multivorans CGD2M]
 gi|221205757|ref|ZP_03578772.1| ompA family protein [Burkholderia multivorans CGD2]
 gi|221211556|ref|ZP_03584535.1| inner membrane lipoprotein YiaD [Burkholderia multivorans CGD1]
 gi|221168917|gb|EEE01385.1| inner membrane lipoprotein YiaD [Burkholderia multivorans CGD1]
 gi|221174595|gb|EEE07027.1| ompA family protein [Burkholderia multivorans CGD2]
 gi|221180626|gb|EEE13029.1| ompA family protein [Burkholderia multivorans CGD2M]
          Length = 214

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     S+ G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASVIGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+ +R+S   G          +++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVAGNRLSA-QGMGPSNPVADNSTEAGRAQNRRVEIYLRAPQ 212


>gi|161524037|ref|YP_001579049.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189351202|ref|YP_001946830.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341466|gb|ABX14552.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|189335224|dbj|BAG44294.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
          Length = 214

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     S+ G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASVIGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+ +R+S   G          +++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVAGNRLSA-QGMGPSNPVADNSTEAGRAQNRRVEIYLRAPQ 212


>gi|307578587|gb|ADN62556.1| OmpA family protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 240

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S+  P+    L+ +   L    + +I + G+T
Sbjct: 104 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D+         N RLS DRA +    L   GV  +R+  ISG          +++   S 
Sbjct: 163 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 218

Query: 331 NRRIDILVED 340
           NRR++I +  
Sbjct: 219 NRRVEIHLIP 228


>gi|157889016|dbj|BAF80962.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           K         K++++    K+I  +        ++  +  E T        I       F
Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGYFGF 226

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D+ S    PE    +Q++G+VL  + +  +I  GHTD++        N +LSL+RA +  
Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           + L KSGV +++I    G+   + K ++D     + NRR++
Sbjct: 282 KELEKSGVVKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|226944423|ref|YP_002799496.1| major outer membrane porin OprF [Azotobacter vinelandii DJ]
 gi|226719350|gb|ACO78521.1| major outer membrane porin OprF [Azotobacter vinelandii DJ]
          Length = 351

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    E+   ++ + + +    +   ++ GHTD+         N +LS  RA + 
Sbjct: 245 FDFDKAQVKEESYADIKNLADFMKQYPQTNTTVEGHTDSV---GTDAYNQKLSERRANAV 301

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV   R+  + G+   R     A++   + NRR++
Sbjct: 302 RDVLVNEYGVQGSRVDSV-GYGESRPVADNATESGRAINRRVE 343


>gi|317502696|ref|ZP_07960808.1| immunogenic lipoprotein PG3 [Prevotella salivae DSM 15606]
 gi|315666182|gb|EFV05737.1| immunogenic lipoprotein PG3 [Prevotella salivae DSM 15606]
          Length = 225

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           A  I    + E T   G+    +   +  +F  + +     +   L K  +VL  +++  
Sbjct: 77  AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTASSKNDLVKFSKVLKDNSDCH 136

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GHTD +        N  LS  RA S    L   GVS  +   + G         + 
Sbjct: 137 VDIYGHTDNT---GNDAINIPLSNRRAESVVNYLKSCGVSSSQFQNVVGKGSSEPVADNS 193

Query: 326 PMNSA--NRRIDILV 338
                  NRR+++ +
Sbjct: 194 TAAGRKQNRRVEVYL 208


>gi|187251342|ref|YP_001875824.1| outer membrane protein [Elusimicrobium minutum Pei191]
 gi|186971502|gb|ACC98487.1| Outer membrane protein [Elusimicrobium minutum Pei191]
          Length = 217

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266
           A  +      E    G +  I+  +N  +F   S+    + I  +  + +V       +I
Sbjct: 77  AKELAAIATVERNADGSIRVIM--KNDILFATGSAELSSQAINDIAAMSKVFKKYPYNII 134

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + GHTD++     A  N  LS +RA + Y  L+ + V    I    G+       ++D 
Sbjct: 135 VVEGHTDST---GSASFNQTLSENRARAVYNQLIANNVKTYSIG-YRGYGASNPIASNDT 190

Query: 327 --MNSANRRIDILVEDRQ 342
               + NRR+ + ++  +
Sbjct: 191 AAGRAQNRRVTLNIKADK 208


>gi|297538022|ref|YP_003673791.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297257369|gb|ADI29214.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 616

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+     +  VL      L       + + GHTD          N RLS  RA + 
Sbjct: 510 FETNSAKIKEISYPVLDNAINTLKEWGDSNVEVGGHTDQRDTSKADY-NQRLSEKRAKAV 568

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
              ++K G+   R+S   G+ + +    +DP   N  NRR++++ E ++
Sbjct: 569 MDYIVKKGIDAKRLSA-KGYGYSKPIAENDPKEGNLVNRRVELVREQKK 616


>gi|169123287|gb|ACA47115.1| OmpF [Pseudomonas putida]
          Length = 343

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 293

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R      ++   + NRR++
Sbjct: 294 KQVLTNQYGVESSRVQSV-GYGESRPVADNKTEAGRAVNRRVE 335


>gi|326773950|ref|ZP_08233232.1| hypothetical protein HMPREF0059_02356 [Actinomyces viscosus C505]
 gi|326636089|gb|EGE36993.1| hypothetical protein HMPREF0059_02356 [Actinomyces viscosus C505]
          Length = 569

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+   P     L  +   L        ++I GHTD    ++ A  N  LS  RA +
Sbjct: 276 FASDSADLAPGAEAQLNTVASQLGQYPDGGTLTIVGHTDD--VQDDAY-NQTLSEKRANA 332

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               L +    +   + +SG      KI    D   +ANRR++I
Sbjct: 333 VKTRLAQLTKLDKWQTSVSGKGESEPKIKDTTDEARAANRRVEI 376


>gi|71276562|ref|ZP_00652836.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Xylella fastidiosa
           Dixon]
 gi|71900206|ref|ZP_00682345.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|170730945|ref|YP_001776378.1| OmpA family protein [Xylella fastidiosa M12]
 gi|182682310|ref|YP_001830470.1| OmpA/MotB domain-containing protein [Xylella fastidiosa M23]
 gi|71162633|gb|EAO12361.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Xylella fastidiosa
           Dixon]
 gi|71730039|gb|EAO32131.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|167965738|gb|ACA12748.1| OmpA family protein [Xylella fastidiosa M12]
 gi|182632420|gb|ACB93196.1| OmpA/MotB domain protein [Xylella fastidiosa M23]
          Length = 241

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S+  P+    L+ +   L    + +I + G+T
Sbjct: 105 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 163

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D+         N RLS DRA +    L   GV  +R+  ISG          +++   S 
Sbjct: 164 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 219

Query: 331 NRRIDILVED 340
           NRR++I +  
Sbjct: 220 NRRVEIHLIP 229


>gi|300313508|ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspirillum seropedicae SmR1]
 gi|300076293|gb|ADJ65692.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 237 FDKSSSIPLPETIVVL----QKIGEVLAHST-EVISIRGHTDASPFR----------NIA 281
           F + S+    E         ++I E L  +    I + GHTD  P +           + 
Sbjct: 37  FRRGSACVESEAKAAFAQVEERIAEYLQQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVY 96

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSANRRIDI 336
            DN  LS  RA  A  +L+     E  R   ++G+   +        +  NRR+++
Sbjct: 97  DDNITLSAARARQARLLLVGRSSPEAARRVIVAGYGDSQPLPGLAASDERNRRVEV 152


>gi|293603504|ref|ZP_06685926.1| OmpA family protein [Achromobacter piechaudii ATCC 43553]
 gi|292818090|gb|EFF77149.1| OmpA family protein [Achromobacter piechaudii ATCC 43553]
          Length = 210

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 224 ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           + I +++  +  +         FD   +   P  + VL  +   L    E    + GHTD
Sbjct: 83  LGIDVVEMPDGSLKVNIPSGVSFDTDKTQLKPALLPVLDSVARSLNQHPELRAKVVGHTD 142

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331
           ++        N  LS++RA S    L K GV+  R+  I G          A+    + N
Sbjct: 143 ST---GALAHNQTLSVNRARSVTDYLAKQGVAATRL-AIEGRGPSDPIGDNATAEGRALN 198

Query: 332 RRIDILV 338
           RR++I +
Sbjct: 199 RRVEIYL 205


>gi|255019372|ref|ZP_05291483.1| outer membrane porin OprF [Acidithiobacillus caldus ATCC 51756]
 gi|254971192|gb|EET28643.1| outer membrane porin OprF [Acidithiobacillus caldus ATCC 51756]
          Length = 226

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P+ +  + ++ + +  + ++ I + GHTD          N +LS  RA + 
Sbjct: 39  FDYNKATLRPDALKTVGELAQTMRQNPQLFIGLDGHTDNI---GGTDFNQKLSEARANAV 95

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L+  G+   RI    G    +     A+D   + NRR++++
Sbjct: 96  KAALVAQGIDASRI-ATRGLGATQPVADNATDAGRAKNRRVEVV 138


>gi|28199574|ref|NP_779888.1| OmpA family protein [Xylella fastidiosa Temecula1]
 gi|28057689|gb|AAO29537.1| OmpA family protein [Xylella fastidiosa Temecula1]
          Length = 242

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S+  P+    L+ +   L    + +I + G+T
Sbjct: 106 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 164

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D+         N RLS DRA +    L   GV  +R+  ISG          +++   S 
Sbjct: 165 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 220

Query: 331 NRRIDILVED 340
           NRR++I +  
Sbjct: 221 NRRVEIHLIP 230


>gi|317402399|gb|EFV82971.1| OmpA family protein [Achromobacter xylosoxidans C54]
          Length = 232

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 213 KGVLFETTRTG---ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA 260
           K V  +  R+G   + I +++  +  +         FD   +   P  + VL  +   L 
Sbjct: 91  KVVKDDVQRSGATSLGIDVVEMPDGSLKVNIPSNVSFDTDKTDLKPALLPVLDSVARSLN 150

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
              E    + GHTD++        N  LS++RA S    L + GV+  R+  + G     
Sbjct: 151 QHPELRAKVVGHTDST---GALAHNQTLSVNRARSVTDYLSRQGVAATRL-SVEGRGPSD 206

Query: 320 LK--IASDPMNSANRRIDILV 338
                A+    + NRR+++ +
Sbjct: 207 PIGDNATAEGRALNRRVEVYL 227


>gi|322418016|ref|YP_004197239.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320124403|gb|ADW11963.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 459

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   E    +  + + +         I GHTD          N  LS  RA + 
Sbjct: 228 FDIDRAVIRQENKDEIAVVCDFMKKYPTTTAVIEGHTDNV---GAPEYNLDLSKRRAQAV 284

Query: 296 YQVLMKS-GVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339
              L+   G+   R+ ++  G A       +D    ANRRI+ +++
Sbjct: 285 VDYLVTDCGIDRSRLEARGFGMARPVAPNTTDEGRQANRRIEAIID 330



 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    + K+ + +         I GHTD          N +LS +RA SA
Sbjct: 352 FDTGKADIGPQYKGEMAKVADYMKQYPTTTAVIEGHTDNV---GGYEYNMKLSRERAESA 408

Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339
            + L+ + G+ + R+S   G+ + R      +    + NRRI+ +++
Sbjct: 409 VRYLVDNFGIEKSRLSA-KGYGYTRRVAYNRTAEGRAKNRRINAIID 454


>gi|77359154|ref|YP_338729.1| hypothetical protein PSHAa0183 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874065|emb|CAI85286.1| putative outer membrane protein; signal peptide [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 354

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  ++S    + +  + K+ E L    +  + + GHT +      + + W LS  RA + 
Sbjct: 244 FPNNTSAVSTQYLNDIDKVAEFLKEYPDTTVLLEGHTSS--VGKASYNKW-LSKKRADAV 300

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
            + L+  GV+EDRI+ + G    RLK  ++   +   NRR++  ++  +
Sbjct: 301 AKKLVADGVAEDRITTV-GLGEERLKNEANTKAAHEENRRVEAHIKTIK 348


>gi|308186600|ref|YP_003930731.1| type VI secretion system, core protein [Pantoea vagans C9-1]
 gi|308057110|gb|ADO09282.1| Putative type VI secretion system, core protein [Pantoea vagans
           C9-1]
          Length = 405

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 14/169 (8%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y  P             + L DL ++++  ++          +       G  + I   +
Sbjct: 234 YQTPLPQITAGRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
              +F +  ++  P    +L ++   +      I +   TD  P  N     ++  S  R
Sbjct: 287 ---LFAEQGTVINPVGRALLARVSTAMKDVKGTILVSVFTDDHPVDNSRFASSYEFSFAR 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A +  Q+L    + +    +  G       + +D     + NRR++I +
Sbjct: 344 ARAITQLLQLQ-LEDGHTVRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391


>gi|170720793|ref|YP_001748481.1| OmpF family protein [Pseudomonas putida W619]
 gi|169758796|gb|ACA72112.1| OmpF family protein [Pseudomonas putida W619]
          Length = 345

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 239 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 295

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            +VL  + GV   R+  + G+   R     A++   + NRR++
Sbjct: 296 KEVLTQQYGVESTRVDSV-GYGETRPVADNATEDGRAVNRRVE 337


>gi|4580968|gb|AAD24555.1|AF117963_1 OprF [Pseudomonas cichorii]
          Length = 346

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 240 FDFDKAVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRASAV 296

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV  +R++ + G+   R     A++   + NRR++
Sbjct: 297 KQVLVNQYGVGANRVNSV-GYGETRPVADNATEAGRAVNRRVE 338


>gi|319953135|ref|YP_004164402.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421795|gb|ADV48904.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 683

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 15/193 (7%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           ++  K  ++E + +    +      K+  +   RK+  ++L + +++     + +  +K 
Sbjct: 494 ENNIKLKEIESADDGSFVFEDLEGDKKYTIKTNRKEYFEELKEVMTTLNDTEIVEVSLKK 553

Query: 215 V-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
           +        GI     D      F+   S    +    L K+ EV++   E VI I  HT
Sbjct: 554 LKELIVVEDGIRKLKTDM---IYFNFDKSFIREDASKELNKLVEVMSEYPEMVIKIESHT 610

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD------- 325
           D+   R  +  N  LS  RA S+   ++  G+  DRI    G+   RL    D       
Sbjct: 611 DS---RGASDYNRYLSDKRAKSSRDYIISQGIDADRIESAIGYGEDRLLNDCDGSVKCTR 667

Query: 326 PMNSANRRIDILV 338
             +  NRR + ++
Sbjct: 668 EKHELNRRSEFII 680


>gi|163755660|ref|ZP_02162779.1| OmpA/MotB [Kordia algicida OT-1]
 gi|161324573|gb|EDP95903.1| OmpA/MotB [Kordia algicida OT-1]
          Length = 635

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 225 LISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
           +++I D         FD  SS        +L  I   L   +   ISI GH D+   R  
Sbjct: 515 VVTIPDPAVGERKVYFDFDSSKLDKNAKEILDNIAANLKNDAGYNISIIGHADS---RGT 571

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            R N +LS++RA      L    +S   I+ I+G         +      + NRR+++++
Sbjct: 572 DRYNDKLSIERAQVIKNYLDSKKLSNSNIT-ITGKGESAPIAPNTTPEGRAKNRRVELII 630


>gi|262280028|ref|ZP_06057813.1| OmpA/MotB domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260379|gb|EEY79112.1| OmpA/MotB domain-containing protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 217

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
                  + KS            +   +L       L    KK+   ++G        GV
Sbjct: 41  GAAAGYGISKSNANSSGQNNRAAAIGAVLGAAGGVYLDQKEKKLRQQMAGT-------GV 93

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273
                  G +  I+    +  FD + S   P     L K+ + LA       I + G+TD
Sbjct: 94  DVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYSTLDKVAQTLAE-DNKSAILVTGYTD 150

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
            +        N  LS  RA S    L   G+S  RI    G+        +   +    N
Sbjct: 151 NT---GNDSINIPLSQSRAQSVKNYLAGKGLSSSRIDA-QGYGSSNPIADNSTASGREQN 206

Query: 332 RRIDILVEDRQ 342
           RR++I +  +Q
Sbjct: 207 RRVEISIYAKQ 217


>gi|332561151|ref|ZP_08415469.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|332274949|gb|EGJ20265.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 254

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 24/249 (9%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P    ++   D  +     +         +   +        +  +  +       +SL 
Sbjct: 23  PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPDSLG 82

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + +   L  +   E +  +     L        LA            ++S    GL+ 
Sbjct: 83  APAGEDPGLRPTASTESAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVSPESFGLLD 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267
             +   V                     F   S++   +   +L ++  V+  S   +  
Sbjct: 143 PALQVNVRIH------------------FAFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDA         N +LSL RA    + L    G++ +R+  + G     L   SDP
Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLTNQSDP 240

Query: 327 MNSANRRID 335
            +  NRR++
Sbjct: 241 RSGENRRVE 249


>gi|242313779|ref|ZP_04812796.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|242137018|gb|EES23421.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|91975492|ref|YP_568151.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91681948|gb|ABE38250.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 37/212 (17%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +    N+ Q+        RD  KG      +    +++ EE   +  +S+ + L+   +
Sbjct: 29  GLAINPNAAQAGEVSAQQIRDQLKGAKTRSLSGARAAVSPEELATVKRISQIRSLSAGDR 88

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +++  +A K                      R  I + I        FD +S+   P   
Sbjct: 89  EQMAAIAAK----------------------RPAIDLEIN-------FDYNSAALTPRAE 119

Query: 250 VVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VS 305
             L+ +G+ L  S      + + GHTDA   +     N  LS  RA S  + L+    + 
Sbjct: 120 PQLKSLGDALISSDLKDSIVMLAGHTDA---KGGDDYNQTLSERRAESVKRYLIDRYSIR 176

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            D +  + G+   +LK  SDP+ + NRR+ I+
Sbjct: 177 PDHLVAV-GYGKKQLKDPSDPLGAENRRVQIV 207


>gi|167572326|ref|ZP_02365200.1| hypothetical protein BoklC_20981 [Burkholderia oklahomensis C6786]
          Length = 470

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +   P+ +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 279 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 338

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L  + +            R  + SG    +    +    +   NRR+D+L
Sbjct: 339 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 391


>gi|26987509|ref|NP_742934.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24982176|gb|AAN66398.1|AE016267_7 OmpA family protein [Pseudomonas putida KT2440]
          Length = 236

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 13/211 (6%)

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
                 Q +   ++    + K   L            + N                    
Sbjct: 20  QNPYDNQGQAQGSTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAGY 79

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
              A K  + L   +A         E  R G  I +I       F   S+   P     L
Sbjct: 80  GYYADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPL 133

Query: 253 QKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             +       +   I + G TD++      + N  LS  RA +    L   GV   RI  
Sbjct: 134 NNLAGSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-S 189

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILVED 340
           + G    +   ++   N  + NRR+++ ++ 
Sbjct: 190 VRGMGPDQPIASNADANGRAQNRRVEVNLKP 220


>gi|118588924|ref|ZP_01546331.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614]
 gi|118438253|gb|EAV44887.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614]
          Length = 234

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+   P     L++  + +           I GHTD          N RLS DRA 
Sbjct: 131 FEYASARLSPSAQANLREFAKGINDPDLAKATFVIEGHTDGI---GSTSYNQRLSEDRAQ 187

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  Q L+  GVS DR+  ++ +   R K+A D  + ANRR++
Sbjct: 188 AVTQFLVNLGVSRDRLKTVA-YGETRPKVA-DVNDPANRRVE 227


>gi|71901865|ref|ZP_00683927.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|71728370|gb|EAO30539.1| OmpA/MotB [Xylella fastidiosa Ann-1]
          Length = 241

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S+  P+    L+ +   L    + +I + G+T
Sbjct: 105 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 163

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D+         N RLS DRA +    L   GV  +R+  ISG          +++   S 
Sbjct: 164 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 219

Query: 331 NRRIDILVED 340
           NRR++I +  
Sbjct: 220 NRRVEIHLIP 229


>gi|315078400|gb|EFT50431.1| OmpA family protein [Propionibacterium acnes HL053PA2]
          Length = 368

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  + L         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASVAKGL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|298291414|ref|YP_003693353.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
 gi|296927925|gb|ADH88734.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
          Length = 202

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN---TPMFD 238
           + +        Q+     +  L  +    +   V  +  ++ +   +           F 
Sbjct: 39  QQILQGLTATTQEEPTITAQLLRQMAEQAVANNVPLDLNKSAVAAQLFKLAQITVQIQFA 98

Query: 239 KSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
             S I  PE+   +  I + L H         I G+TD +       +N +LS  RA + 
Sbjct: 99  LGSDIIRPESYATIGAISDALHHPILFNYHFLIVGNTDTT---GTRANNLKLSQARADAV 155

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            Q L+   GV   R+  + G     L+  +DP N  NRR+
Sbjct: 156 KQALVTVFGVDPARLEAV-GLGQEDLQTPNDPTNPINRRV 194


>gi|188995861|ref|YP_001930113.1| immunoreactive 23 kDa antigen [Porphyromonas gingivalis ATCC 33277]
 gi|188595541|dbj|BAG34516.1| immunoreactive 23 kDa antigen [Porphyromonas gingivalis ATCC 33277]
          Length = 223

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +          V     +T   G  I ++   +  +F  +SS   P + 
Sbjct: 70  KKMDKQKKELEAA---------VPDATIQTVNDGEAI-LVTFDSGILFATNSSTLSPNSR 119

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K    +  + +  I I GHTD +      + N  LS  RA S Y  L   GVS  R
Sbjct: 120 TALTKFAANMNKNPDTDIRIVGHTDNT---GSDKINDPLSERRAASVYSFLNSQGVSMSR 176

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           ++   G   H     +      SANRR+++ +  
Sbjct: 177 MAA-EGRGSHEPVADNSTVAGRSANRRVEVYILP 209


>gi|254283478|ref|ZP_04958446.1| OmpA family protein [gamma proteobacterium NOR51-B]
 gi|219679681|gb|EED36030.1| OmpA family protein [gamma proteobacterium NOR51-B]
          Length = 199

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 19/175 (10%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR------TGILISIIDQ- 231
           S+  I  ++    L  + +K ++  S +  D+I   +  +T R       G+ +   D  
Sbjct: 6   SQAGIRVIESDSELTAVRRKTAAKHSPVDTDSIGYYLDVQTARLQALAREGVSVERRDDH 65

Query: 232 -----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
                  T  F   S++     + +L  +  VL    +  I I GH+D+      +  N 
Sbjct: 66  LLIVMPGTASFASDSALLKSNMLGLLDDLSTVLQEFNKSLIFIGGHSDSL---GDSGYNL 122

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            LS  RA +    L K G+   R+  + GF   +    +D     + NRRI++ V
Sbjct: 123 YLSRQRALAVGTHLSKVGIDSWRLV-VRGFGDAKPIATNDTESGRAGNRRIELTV 176


>gi|317402977|gb|EFV83516.1| outer membrane protein A [Achromobacter xylosoxidans C54]
          Length = 197

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 91  FFDFDKSTLKPEGRQLLDQVAQQARGIELETIIAVGHTDS--IGTDAY-NQKLSERRAAS 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G        ++      + NRR++I +V  R+
Sbjct: 148 VKAYLVSKGIDPNRIY-TEGKGEKNPIASNKTKEGRAQNRRVEIEIVGSRK 197


>gi|170723577|ref|YP_001751265.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169761580|gb|ACA74896.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 240

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 13/208 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           +SQ      ++    + K   L            + +                       
Sbjct: 27  DSQGQAQGGSTGMSKTAKYGGLGALAGAIAGAAIDHDNRGKGALIGAAAVGAAAAGYGYY 86

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A K  + L   +A         E  R G  I +I       F   S+   P     L  +
Sbjct: 87  ADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNL 140

Query: 256 GEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
                  +   I + G TD++      + N  LS  RA +    L   GV   R+  + G
Sbjct: 141 ATSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSAYLTSQGVDASRV-SVRG 196

Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340
               +   ++   N  + NRR+++ ++ 
Sbjct: 197 MGPDQPIASNADANGRAQNRRVEVNLKP 224


>gi|46578466|ref|YP_009274.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447877|gb|AAS94533.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232394|gb|ADP85248.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 364

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   S ++++ +       D  + +    + L   +  +G   +    G  + I+ 
Sbjct: 62  MQTGSGEASGDRLVPLTDPDAQHDARRDLGPLKATL---DGAQGKGVDFFDNG-NVQILS 117

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--------- 281
                +F    +    E   +L      L      + + GH  ASP R+           
Sbjct: 118 IDADVLFGPGETRLSKEGERLLATFAPTLRTIEHPLLVAGH--ASPPRDEQGAGFRLRAE 175

Query: 282 ---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
                +W LSL RA S Y+ L   GV   R+  + GF     +    +     ANRR+D+
Sbjct: 176 GTLSPSWMLSLRRATSVYRALRDLGVPSSRLI-LEGFGDGHPRHDAFTATGRRANRRVDL 234

Query: 337 LVEDR 341
           +++ R
Sbjct: 235 VLDKR 239


>gi|326336372|ref|ZP_08202543.1| lipoprotein PG3 [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691546|gb|EGD33514.1| lipoprotein PG3 [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 231

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 17/180 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S    E   +   +           ++   AKKI   + G            +    GI+
Sbjct: 54  SGGNSELGAVIGTAVGGAAGAIIGNQMDRQAKKIEEEIPGA---------EVKRVDDGIV 104

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           ++  D+++   F+ + +    E   +L K+  VL    +  + + GHTD++     A  N
Sbjct: 105 VT-FDEKSGVTFEFNKATLTSEAQTILNKMVSVLKEYPDTNVIVAGHTDST---GKAAYN 160

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             LS  RA +       +G++  R +    F   +     ++    + NRR+++++   +
Sbjct: 161 MTLSEKRAKAVTNFFTTNGLNASRFT-TKWFGATQPAYDNSTAEGRAKNRRVNVVIVPNE 219


>gi|281420329|ref|ZP_06251328.1| lipoprotein PG3 [Prevotella copri DSM 18205]
 gi|281405631|gb|EFB36311.1| lipoprotein PG3 [Prevotella copri DSM 18205]
          Length = 248

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + S         L +   VL ++T+  +SI+G+TDA+    I   N  LS  RA +
Sbjct: 132 LFPTNGSTLSSSAKTDLAQFAGVLKNNTDCEVSIQGYTDATGNDGI---NLPLSQKRAEA 188

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            Y  L   GV+  ++  + GF      + +    + NRR+++ +   Q 
Sbjct: 189 VYNYLASCGVTSRQVKNVQGFGSANPVVNTTAACAQNRRVEVYMYASQA 237


>gi|262373433|ref|ZP_06066711.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205]
 gi|262311186|gb|EEY92272.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205]
          Length = 159

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
            ++K   F  T  G  + +       +FD + S   PE    + ++ + L       + I
Sbjct: 33  KMLKKEGFVLTEEGWSLGL---PERLLFDFNKSDIKPENGKEIIRLAKQLNKYDLQKLKI 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD     N    N +LS +RA S   + +  G  +  ++ + G   ++  + +  D 
Sbjct: 90  VGHTDD--IGNPEY-NQKLSEERAQSVAGIFLNEGFKQTNLN-VIGRGSNQPFVPNTSDE 145

Query: 327 MNSANRRIDILVED 340
             ++NRR+ I++  
Sbjct: 146 NRASNRRVAIIIIP 159


>gi|217423098|ref|ZP_03454600.1| OmpA family protein [Burkholderia pseudomallei 576]
 gi|217394006|gb|EEC34026.1| OmpA family protein [Burkholderia pseudomallei 576]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|160898923|ref|YP_001564505.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160364507|gb|ABX36120.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 168

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266
              +++   F     G  + +       +F   S+    +    + ++G  L     E +
Sbjct: 43  QQQLLRSQGFAQADQGWELQMS---GKLLFGFDSAEVGAQARTKVLELGRALKGVGIERL 99

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + GHTD    R     N RLSL RA +   VL ++G++   I  + G       + SD 
Sbjct: 100 RVEGHTDD---RGSDAYNMRLSLRRAEAVADVLAEAGLARQDIE-VKGLGRAMPVVPSD- 154

Query: 327 MNSANRRIDILV 338
             + NRR+ I+V
Sbjct: 155 -AAENRRVAIVV 165


>gi|260767782|ref|ZP_05876717.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
 gi|260617291|gb|EEX42475.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
          Length = 332

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
             + ++  F  +S+    E    L  +   L    +  + I GHTD++        N +L
Sbjct: 215 FQKLDSKSFAHNSAKMSEEGKAQLGDLVAFLNEHPQANVEITGHTDST---GAEAYNQKL 271

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA      L + G+   RI+   G        ++        NRR++I++
Sbjct: 272 SEKRAQGVSDALQEQGIDAARITA-KGEGESNPIASNATAAGREQNRRVEIVI 323


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum seropedicae SmR1]
 gi|300076101|gb|ADJ65500.1| lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 193 QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +   ++I+S ++  +  +  I  G+   T+  G+L           F+   +   PE   
Sbjct: 120 EAQRQQIASDMATSLNSSYIINNGLRVSTSEQGVL-DNTLANRVVSFESGRATLTPEGKR 178

Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L +I   +       + I G+TD      +   N  LSL RA +    L   GV +  +
Sbjct: 179 ILDEIAATMLQLKGRRVEIIGNTDNE---GLRASNISLSLARADAVKAYLSTKGVDDS-L 234

Query: 310 SKISGFAHHRLKIASDP--MNSANRRID 335
              SG    R   ++      + NRRI+
Sbjct: 235 LTTSGQGPDRPVASNATSEGRARNRRIE 262


>gi|320095395|ref|ZP_08027074.1| outer membrane protein [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977666|gb|EFW09330.1| outer membrane protein [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 402

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281
           G  I++ D     +FD   S    +    L K+  VLA +    + + GHTD+    + A
Sbjct: 283 GTTITLQD---GVLFDFGESAVRADAADTLAKLASVLADAKVPAAHVYGHTDS--ISDEA 337

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRR 333
             N  LS  RA +    L K+G +        GF   +    +       +P    ANRR
Sbjct: 338 F-NQTLSEQRAKAVVDELKKNGATAS--LDWQGFGETKPVAPNTNDDGTDNPAGRQANRR 394

Query: 334 IDILV 338
           ++I +
Sbjct: 395 VEIFI 399


>gi|224417733|ref|ZP_03655739.1| CADF precursor [Helicobacter canadensis MIT 98-5491]
 gi|253827077|ref|ZP_04869962.1| outer membrane protein OprF [Helicobacter canadensis MIT 98-5491]
 gi|313141275|ref|ZP_07803468.1| cadf [Helicobacter canadensis MIT 98-5491]
 gi|253510483|gb|EES89142.1| outer membrane protein OprF [Helicobacter canadensis MIT 98-5491]
 gi|313130306|gb|EFR47923.1| cadf [Helicobacter canadensis MIT 98-5491]
          Length = 306

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S++  P     +Q   + +  + +    I GHTD++     A  N +LS  RA S 
Sbjct: 202 FPTDSAVVDPVYYPEIQDFAKYMDQNPDKTAVINGHTDST---GSAAYNQKLSEKRAQSV 258

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              ++K G+S +R+    G+   +   ++        NRR++
Sbjct: 259 KNEIVKQGISSERLEA-KGYGEEKPIASNKTREGRQKNRRVE 299


>gi|170750466|ref|YP_001756726.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656988|gb|ACB26043.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 319

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LP +   +  +  +L       ++I G+TD +     A  N  LS  RA + 
Sbjct: 218 FATDRAEILPASAPQIDAVAALLRTDPGLRLAINGYTDGT---GAAAHNQALSDGRAKAV 274

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
              L+ +G+++DR+ +  GF       ++D     + NRR++++
Sbjct: 275 VARLVGAGIAKDRL-RAEGFGAASPVASNDSAAGRAQNRRVELV 317


>gi|162454125|ref|YP_001616492.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161164707|emb|CAN96012.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 274

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289
               +FD S +   P +   L+ + + +    E   + I GHTDA    +    N  LS 
Sbjct: 71  EGKIVFDTSKATIRPGSEKTLETLLQFIKEHPEVTRLRIEGHTDAQ---SSEEHNQALSA 127

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            RA +    L+   V+ DR+  + GF   R    ++     S NRR++  V
Sbjct: 128 RRALAVADWLVDHEVASDRLIAV-GFGESRPLGPNEIAAGRSENRRVEFHV 177


>gi|57505781|ref|ZP_00371707.1| outer membrane protein OprF [Campylobacter upsaliensis RM3195]
 gi|57016054|gb|EAL52842.1| outer membrane protein OprF [Campylobacter upsaliensis RM3195]
          Length = 316

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   +   P     +Q I +VL  +     I + GHTD +        N +LS  RA  
Sbjct: 212 FEFDKTTINPAFESRIQNIAKVLEENEKYNTI-LEGHTDNT---GSRAYNQKLSERRAQR 267

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
               LMK GV + RI  + G+   + + +++     + NRR++
Sbjct: 268 VANELMKFGVDKKRIE-VKGYGQDKPRSSNETKEGRADNRRVE 309


>gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040630|gb|ACT57426.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 190

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              + + +LQ I  +L      VI+I+ HTD+       ++N  +S +RA      L++ 
Sbjct: 88  LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI---GTLKNNLLISQERADVIKSYLIQR 144

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           GVS +R   + GFA+      +D       N+RI+I +  R
Sbjct: 145 GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185


>gi|300023765|ref|YP_003756376.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525586|gb|ADJ24055.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 716

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 19/288 (6%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
           +  + +     KA          N+    K   D      R+    I L  D       V
Sbjct: 438 YATSQSVAGDVKAAAGQTCETTVNVAFVGKMKTDLAWKATRAPNGMITLEGDVPDDPARV 497

Query: 112 DLKIGSTNQ-KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
            +   +      +    +  I            + +L + +   +   + +  E  I   
Sbjct: 498 RVIETAQRIYPGESITDQMKIVGAPPEPWQSATRVALEQLARLRRGDVEMSGKEVMIQGA 557

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                       +L+       +   +   + ++G          L   T          
Sbjct: 558 AESERVADEIRSVLSTDLPPGFK--VRDAITVMTGEEKAADSCQTLMRQTS--------- 606

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
            + T  F+++ +    ++   L+ + EV        I I GHTDA         N RLS 
Sbjct: 607 AKGTINFERAKADLTSDSTQTLRDLVEVANECPSFSIEIEGHTDAE---GTDERNQRLSD 663

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            RA +    L ++GVS  R+S I G+   R     A++   + NRRI+
Sbjct: 664 RRARAVADFLTQNGVSARRLSTI-GYGATRPVADNATETGRAKNRRIE 710


>gi|332668433|ref|YP_004451221.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332337247|gb|AEE54348.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 501

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S++    +  +L ++ ++L       + + GHTD          N +LS  RA + 
Sbjct: 398 FETGSAVLKNTSNTILDQVVDILKRYSDYNVRVSGHTDNV---GSDELNLKLSKARAKAC 454

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L+  G+  +RI    GF   R    +      + NRR +
Sbjct: 455 TDYLVSKGIPANRIV-FDGFGESRPVANNATPQGRTQNRRTE 495


>gi|170734971|ref|YP_001774085.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169821009|gb|ACA95590.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 220

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++  P     L  +   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTPAATAALDTL---LNQQADRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D  +  +G        ++D     + NRR++I ++
Sbjct: 172 DAVAGYLREHGLKADSFAA-AGHGEANPAASNDTAEGRARNRRVEISLQ 219


>gi|332285773|ref|YP_004417684.1| lipoprotein PlpD [Pusillimonas sp. T7-7]
 gi|330429726|gb|AEC21060.1| lipoprotein PlpD [Pusillimonas sp. T7-7]
          Length = 266

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S++     +  ++ +   L   +  E +++ GHTD       A  N RLS  RA S
Sbjct: 155 FAFGSAVLTTAGLSTVRDVATQLKQLSKLEQVAVAGHTDRI---GDAGANQRLSQQRAES 211

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILVEDRQ 342
               L+  G+    + +  G+   R  +  D  +        + NRR+DI V+ ++
Sbjct: 212 VRNALVAQGIPSSAV-RAQGYGESRPAVQCDQQDRNDLIACLAPNRRVDIEVQGQR 266


>gi|167565227|ref|ZP_02358143.1| hypothetical protein BoklE_21929 [Burkholderia oklahomensis EO147]
          Length = 459

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +   P+ +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 264 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 323

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L  + +            R  + SG    +    +    +   NRR+D+L
Sbjct: 324 ADELRTTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 376


>gi|187250732|ref|YP_001875214.1| outer membrane protein [Elusimicrobium minutum Pei191]
 gi|186970892|gb|ACC97877.1| Outer membrane protein [Elusimicrobium minutum Pei191]
          Length = 174

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S         +L K+   ++      + + GHTD     +   ++W LS  RA + 
Sbjct: 65  FEFDSVHLAASAYPILDKVAGFMVGRQHIKLIVEGHTDN--VGSDEYNDW-LSEARAIAV 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
              ++  GV  D I K+ GF   R     D     + NRRI   V DR
Sbjct: 122 KSYIVSRGVHPDSI-KVYGFGKRRPLTLDDSIEGRATNRRIVFTVTDR 168


>gi|119776394|ref|YP_929134.1| OmpA/MotB [Shewanella amazonensis SB2B]
 gi|119768894|gb|ABM01465.1| OmpA/MotB [Shewanella amazonensis SB2B]
          Length = 201

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 212 VKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
           VKG   +    G + +I ++R    +F   SS   P+    ++++   +       ++I 
Sbjct: 53  VKGAAIDNYGCGDIKTINERRELKVLFPNDSSYLAPQYFGQIEELASFMRQFPNTKVTIE 112

Query: 270 GHTDASPFRNIARD-NWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPM 327
           GH      R    D N  LS  RA +  +VL  + G+   R+  + GF ++     SD  
Sbjct: 113 GHCS----RTGGYDYNMELSQRRANAVTEVLTQQYGIESSRLKAV-GFGYNSPVDPSDTP 167

Query: 328 NS--ANRRI--DIL 337
            +   NRR+  +I+
Sbjct: 168 EAHDKNRRVIAEIV 181


>gi|262403402|ref|ZP_06079961.1| outer membrane protein A precursor [Vibrio sp. RC586]
 gi|262350394|gb|EEY99528.1| outer membrane protein A precursor [Vibrio sp. RC586]
          Length = 332

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           + +  + ++ D  VK  +   T   I  + + +    +F   S  P  E I  L +I  V
Sbjct: 188 VEAAPTSIIEDTPVKETVTVKTPPQIQ-TFLPKTTVGLFGFDSVEPSQEFIDQLTEISSV 246

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L    +    + GHTD++     A  N  +S  RA +    L++ GV+  ++    G   
Sbjct: 247 LISYPQAQAKVVGHTDST---GSALYNQNISEHRAQAVVNKLIELGVTPTQLEW-RGEGE 302

Query: 318 HRLKIASDP--MNSANRRIDILV 338
            +    ++     +ANRR++I +
Sbjct: 303 FQPVADNNTAEGRAANRRVEITI 325


>gi|220934640|ref|YP_002513539.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995950|gb|ACL72552.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDR 291
             +F  +S+   P+    L ++   LA    V  I + GHTD +     A  N  LS  R
Sbjct: 113 AALFAINSAAISPQGRAELDQLVSDLARLDNVQNIHVVGHTDNT---GAADYNMDLSKRR 169

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A S    L++ G+  D I+   G    +   ++      + NRR++I +
Sbjct: 170 AESVKAYLVEKGIRADLIT-TEGRGITQPVASNATTEGRAQNRRVEITI 217


>gi|298504468|gb|ADI83191.1| OmpA family outer membrane protein [Geobacter sulfurreducens KN400]
          Length = 429

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P+    ++K  + L    +    I GHTD+         N +LS  RA + 
Sbjct: 321 FDTDKAVVKPQYNDEIKKAADFLKEYPDATAVIEGHTDSV---GSDAYNQKLSERRAKAV 377

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            + L+   G+S  R+S   GF   +    +        NRR+  +++
Sbjct: 378 MKYLVDKFGISAKRLSA-KGFGESKPIADNATEEGRYKNRRVVAVID 423


>gi|238754016|ref|ZP_04615375.1| Inner membrane lipoprotein yiaD [Yersinia ruckeri ATCC 29473]
 gi|238707768|gb|EEQ00127.1| Inner membrane lipoprotein yiaD [Yersinia ruckeri ATCC 29473]
          Length = 219

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR G  I +    N   FD +SS   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++        N  LS  RA +    L+  GV+ +RI +  G       
Sbjct: 142 EKTAVNVTGYTDST---GARAHNMILSQQRAETVGSALITQGVAANRI-RTIGAGPDNPV 197

Query: 322 IASDPMN--SANRRIDILV 338
             +      + NRR++I +
Sbjct: 198 ATNSTTAGKAQNRRVEITL 216


>gi|167740993|ref|ZP_02413767.1| OmpA family protein [Burkholderia pseudomallei 14]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|167578218|ref|ZP_02371092.1| OmpA family domain protein [Burkholderia thailandensis TXDOH]
          Length = 333

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+   L ++ ++L  +    + I GHTD          N  LS  RA + 
Sbjct: 231 FDTDKAQVKPESKAQLDEMAKLLTANPNLKVYIVGHTDNQ---GQFAHNVDLSQKRADAV 287

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
            Q L  +  ++  R+    G A      ++  +   + NRR++++
Sbjct: 288 AQTLATTYRIAPGRLVA-KGVASLSPVASNGDEAGRAQNRRVELV 331


>gi|39995468|ref|NP_951419.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982231|gb|AAR33692.1| OmpA domain protein [Geobacter sulfurreducens PCA]
          Length = 429

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P+    ++K  + L    +    I GHTD+         N +LS  RA + 
Sbjct: 321 FDTDKAVVKPQYNDEIKKAADFLKEYPDATAVIEGHTDSV---GSDAYNQKLSERRAKAV 377

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            + L+   G+S  R+S   GF   +    +        NRR+  +++
Sbjct: 378 MKYLVDKFGISAKRLSA-KGFGESKPIADNATEEGRYKNRRVVAVID 423


>gi|16124456|ref|NP_419020.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|221233140|ref|YP_002515576.1| outer membrane protein [Caulobacter crescentus NA1000]
 gi|13421324|gb|AAK22188.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|220962312|gb|ACL93668.1| outer membrane protein [Caulobacter crescentus NA1000]
          Length = 226

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
           ++G      R G  I ++   +   F    S   P    VL  +   L    +  I + G
Sbjct: 97  LEGSGVMIRRNGDQIVLV-MPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--M 327
           H D+         N  LS  RA +    L    GV  DR+  ++G         +     
Sbjct: 156 HADS---SGPDDYNQTLSERRASAVAGYLTGPGGVLVDRVF-VAGMGERAPIADNATADG 211

Query: 328 NSANRRIDILVED 340
            + NRR++I++  
Sbjct: 212 RAQNRRVEIILRP 224


>gi|325953789|ref|YP_004237449.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323436407|gb|ADX66871.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 337

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +    + +I + L       ISI G+TD +      + N  LS  RA + 
Sbjct: 235 FDTDKATLKADGKEAVAEITKALNTDKMLKISINGYTDNT---GDEKHNLDLSKQRAETV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L+KSG+  +R+S   GF  +     ++     S NRR++++
Sbjct: 292 KKELIKSGIDVNRLSS-EGFGQNNPIADNNTEEGKSQNRRVELI 334


>gi|260774012|ref|ZP_05882927.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
 gi|260610973|gb|EEX36177.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
          Length = 351

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           V+ ++ +T    +   ++ +     F   S   +  +   + K+   +  S  +I+I GH
Sbjct: 216 VEKIVEKTEIQQVNYELVSESFYSNFANDSYELI--SANDIDKLIPKIKKSQGMITIIGH 273

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329
           TD+         N++LS  RA S    L+K+G+  D++  + G    +    +      +
Sbjct: 274 TDS--IGRPLY-NYQLSYKRAQSVADYLIKNGIKSDQVV-VIGMGEDKPIADNLSYEGRA 329

Query: 330 ANRRIDIL 337
            NRR++++
Sbjct: 330 KNRRVEVI 337


>gi|288940353|ref|YP_003442593.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288895725|gb|ADC61561.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 608

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 14/253 (5%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           +L       +   +    + N   +  R        +    ++    +LT  + +   L 
Sbjct: 359 ELESSLETVRAEAEEARTTLNAALEQARARLAELQQAAETTAQDENQALTEATARIAALE 418

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
              +  ++ + +        ++   L  + +   Q +  +  S      A  + +    +
Sbjct: 419 AELEQARAQDGDAEALSAAQARIDALEAELETARQSVQPEAPSADQSEAAAELARLRALQ 478

Query: 219 TTRTGILISIIDQ-------RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           T    +  +  ++        +   F    +      +  L++I E+L    E    I G
Sbjct: 479 TRFAQLNGTFTERGLLLSLAESELSFPTGRATLPTGELASLERIAELLKAHPELTARIEG 538

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           HTD+      A  N  LSL RA +  Q L++ GV   R+S   G    R     A+    
Sbjct: 539 HTDSL---GSAALNQSLSLQRAEAVRQALVERGVDGGRLSA-EGLGPTRPIADNATAEGR 594

Query: 329 SANRRIDILVEDR 341
             NRR+++ + DR
Sbjct: 595 GKNRRVEVYILDR 607


>gi|120437200|ref|YP_862886.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117579350|emb|CAL67819.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 522

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 27/291 (9%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
           E Y           SK  F    P    S +   + ++E  T  +        N  ++ Q
Sbjct: 228 EDYSVEHPSLSADGSKLYFASDMPGGSGSFDIYVVDVNEDGTYGTPQNLGAGVNTAQRDQ 287

Query: 126 RL---ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                + ++ Y ++          + R      ++    +   S + +  + +    +  
Sbjct: 288 FPFISDEDVLYFTSDGHQGFGNLDIFRTEGDFSEVENLGESINSGSDDFAFVIKESEEMG 347

Query: 183 ILAMKRK--KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             A  R+    L    ++ +  +            + + T    +I I    +   FD  
Sbjct: 348 YFASNRRGTDNLYQFTREENEIIEAPT--------VTDETSGQDIIPI--DGSKIYFDFD 397

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            +    E+  VL  +   +       + +  H DA   R     N  LS  RA S    L
Sbjct: 398 KATIKAESKPVLDSVVTYMNDYPNIKVKVESHADA---RGSDSYNMALSKRRAASTVDYL 454

Query: 300 MKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQG 343
           ++ G+ + R++   G+   R           ++   + NRR   +V +R G
Sbjct: 455 VEKGIDKARLTS-EGYGESRPTNDCTQPTGCTNEQYAKNRRSAFVVSNRNG 504


>gi|86740618|ref|YP_481018.1| OmpA/MotB [Frankia sp. CcI3]
 gi|86567480|gb|ABD11289.1| OmpA/MotB [Frankia sp. CcI3]
          Length = 363

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   ++   P   + L ++   L     V+ + GH DA      A  N  LSLDRA    
Sbjct: 260 FPVGAATLSPPARLWLDRVAAALRAGRVVVLVGGHADA---SGSATLNQALSLDRAQVIA 316

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             L   GV  D + +++GF        +      +ANRR++I+
Sbjct: 317 DYLTDRGVRPD-LIRVAGFGSRWPVADNATPRGRAANRRVEIV 358


>gi|85712856|ref|ZP_01043898.1| OprF [Idiomarina baltica OS145]
 gi|85693320|gb|EAQ31276.1| OprF [Idiomarina baltica OS145]
          Length = 362

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 26/217 (11%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS---KEK 182
           R+E  +    +   +E   N   +    G++         +  +       P      + 
Sbjct: 151 RVEGGVQQGFDEDYTEGFANVGLQYFFGGRNAVTEAKPRPAAAQPTETTPAPQQTMDSDN 210

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
              +  + +  D  ++ S    G            ET R  +L+          FD  SS
Sbjct: 211 DGVIDSRDKCADTPRRYSVDADGCTMYEN------ETVREQLLVE---------FDFDSS 255

Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
               + +  + ++ E +       ++I GHTD     +   + W LS  RA S   VL++
Sbjct: 256 QVRKDAMEPIAEMAEFMNEHPQLDLTIHGHTDK--IGDAEYNQW-LSQRRAESVKNVLVE 312

Query: 302 S-GVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
           S G+S  RI+ + G    + K+  D       NRRI+
Sbjct: 313 SYGISASRINTV-GHGESQPKVKGDSPADRQENRRIE 348


>gi|221369495|ref|YP_002520591.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
 gi|221162547|gb|ACM03518.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 254

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 24/249 (9%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P    ++   D  +     +         +   +        +  +  +       NSL 
Sbjct: 23  PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPNSLG 82

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + +   L  +   + +  +     L        LA            +++    GL+ 
Sbjct: 83  APAGEDPGLRPTASTDGAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVTPESFGLLD 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267
             +   V                     F   S++   +   +L ++  V+  S   +  
Sbjct: 143 PALQVNVRIH------------------FAFDSAVLASDQTPLLAQLCTVMKASDIRLFQ 184

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDA         N +LSL RA    + L    G++ +R+  + G     L   SDP
Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLTNQSDP 240

Query: 327 MNSANRRID 335
            +  NRR++
Sbjct: 241 RSGENRRVE 249


>gi|254195556|ref|ZP_04901984.1| OmpA family protein [Burkholderia pseudomallei S13]
 gi|169652303|gb|EDS84996.1| OmpA family protein [Burkholderia pseudomallei S13]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|254182964|ref|ZP_04889557.1| OmpA family protein [Burkholderia pseudomallei 1655]
 gi|184213498|gb|EDU10541.1| OmpA family protein [Burkholderia pseudomallei 1655]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|33598186|ref|NP_885829.1| putative outer membrane protein [Bordetella parapertussis 12822]
 gi|33566744|emb|CAE38956.1| putative outer membrane protein [Bordetella parapertussis]
          Length = 208

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           + E     + ++I    +   FD   S   P  + VL  +   L    E    + GHTD+
Sbjct: 85  VVEMPDGSLKVNI---PSNVSFDTDKSQLKPALLPVLDSVARALNQHPELRTKVVGHTDS 141

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332
           +     A  N +LS++RA +    L K GV++ R++ + G   +      A+    +ANR
Sbjct: 142 T---GSAAHNQQLSVNRARAVTSYLGKQGVAQGRMT-VEGRGANDPVGDNATAEGRAANR 197

Query: 333 RIDILV 338
           R+++ +
Sbjct: 198 RVEVYL 203


>gi|328470939|gb|EGF41850.1| outer membrane protein OmpA [Vibrio parahaemolyticus 10329]
          Length = 329

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA +    +  +G+  DR++ + G         +        NRR++++V
Sbjct: 268 ERRAQAVADYITSAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318


>gi|226198818|ref|ZP_03794382.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|225929258|gb|EEH25281.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|24376330|ref|NP_720438.1| outer membrane protein A [Shewanella oneidensis MR-1]
 gi|24345232|gb|AAN53038.1| outer membrane protein OmpA [Shewanella oneidensis MR-1]
          Length = 342

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 214 GVLFETTRTGILISIIDQR---------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
            V+ +      ++ I+++R         N+ +F  +SS+    +      +   L     
Sbjct: 202 EVVTQVVELPPVVQIVEKRQFVYSEQKGNSLLFAHNSSVLNNTSQ--FADVVSFLKQHPT 259

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
               I GHTD++   +   + W LS  RA S    L+  GV   +++ + G         
Sbjct: 260 ASAVITGHTDST--GSDKYNQW-LSERRAISVANYLVSQGVQSAQLTSV-GKGETASVAD 315

Query: 324 SDPMN--SANRRIDILV 338
           +   N  + NRR++I +
Sbjct: 316 NTTENGRAMNRRVEITI 332


>gi|114045658|ref|YP_736208.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113887100|gb|ABI41151.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 487

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  S   LPE   V++ +   L  + +    + GHTD    +     N  LS  RA +
Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             ++L  S G+   ++  + G   H      + +     NRR+++++  
Sbjct: 437 IVKLLTSSHGIQTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484


>gi|326402347|ref|YP_004282428.1| putative outer membrane protein [Acidiphilium multivorum AIU301]
 gi|325049208|dbj|BAJ79546.1| putative outer membrane protein [Acidiphilium multivorum AIU301]
          Length = 361

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   +   P    ++ +  +    +    +++ G+TD          N +LSL RA++
Sbjct: 259 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 315

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
               L+  GVS++ I  I G+    L + + P      NRR++I++
Sbjct: 316 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 360


>gi|316936265|ref|YP_004111247.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315603979|gb|ADU46514.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 464

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 92/262 (35%), Gaps = 14/262 (5%)

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
           G  + + PP      K  ++    +     D  + +       ++        +      
Sbjct: 211 GDNEIEAPPYVFRAYKDPVAGQVALDGYVPDNAVHAALAAATGRKFFGEKVVDNLKASVG 270

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KI 199
             K  L         L + +     ++  E +       E   +  R    ++L +   +
Sbjct: 271 APKGFLDAAVTALGALSRLSTGTLVLSDREIHLSGDALYEAAASQIRGGLNKELPQGWTV 330

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            + LS   A   V   + +    G+L      + T  FD +S+    ++  +L ++ E  
Sbjct: 331 KADLSVKPAAAPVDASVCQQLFNGLL-----AKTTVQFDSASAGISKDSAGLLDRLIETA 385

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  I I GHTD+         N  LS  RA +    ++++GV+ +R+ +  G+   
Sbjct: 386 MRCPNARIEIAGHTDSD---GDDAFNQSLSEKRARAVVDYMVRAGVTPERL-QAFGYGSK 441

Query: 319 RLK--IASDPMNSANRRIDILV 338
                  SD   + NRRID +V
Sbjct: 442 IPLSGNDSDAGKAKNRRIDFVV 463


>gi|4580973|gb|AAD24560.1|AF117968_1 OprF [Pseudomonas resinovorans]
          Length = 340

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    E+   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 243 FDFDKAKVKEESYGDIKNLADFMNQYPATTTTVEGHTDSV---GTDAYNQKLSERRADAV 299

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
             VL+   GV  +R++ + G+   R    +      + NRR+
Sbjct: 300 RDVLVDQYGVGSERVNAV-GYGETRPVADNATADGRAVNRRV 340


>gi|148259194|ref|YP_001233321.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146400875|gb|ABQ29402.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 361

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   +   P    ++ +  +    +    +++ G+TD          N +LSL RA++
Sbjct: 259 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 315

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
               L+  GVS++ I  I G+    L + + P      NRR++I++
Sbjct: 316 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 360


>gi|148259193|ref|YP_001233320.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326402346|ref|YP_004282427.1| putative outer membrane protein [Acidiphilium multivorum AIU301]
 gi|146400874|gb|ABQ29401.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
 gi|325049207|dbj|BAJ79545.1| putative outer membrane protein [Acidiphilium multivorum AIU301]
          Length = 364

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   +   P    ++ +  +    +    +++ G+TD          N +LSL RA++
Sbjct: 262 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 318

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
               L+  GVS++ I  I G+    L + + P      NRR++I++
Sbjct: 319 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 363


>gi|222823421|ref|YP_002574995.1| outer membrane fibronectin-binding protein [Campylobacter lari
           RM2100]
 gi|222538643|gb|ACM63744.1| outer membrane fibronectin-binding protein [Campylobacter lari
           RM2100]
 gi|244538678|dbj|BAH82830.1| fibronectin-binding protein [Campylobacter lari]
 gi|244538683|dbj|BAH82834.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               P   +     ++ K +    AK+I  +        ++  +  E T     I +   
Sbjct: 173 GNKTPKAPQLATNQIEEKPQ----AKQIDKSCPEPRKGALLDHIGCEKT-----IML--- 220

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
                F        PE    +Q++G+VL  + +  +I  GHTD +        N +LSL+
Sbjct: 221 --EGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLE 275

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           RA +  + L K+GV++++I+   G+   +   ++D     + NRR++
Sbjct: 276 RAKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321


>gi|53721134|ref|YP_110119.1| OmpA family protein [Burkholderia pseudomallei K96243]
 gi|52211548|emb|CAH37542.1| OmpA family membrane protein [Burkholderia pseudomallei K96243]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|126456220|ref|YP_001074174.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|126229988|gb|ABN93401.1| OmpA family protein [Burkholderia pseudomallei 1106a]
          Length = 542

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529


>gi|325286110|ref|YP_004261900.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321564|gb|ADY29029.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 372

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLD 290
              +F+ + +  L  +   +  +  +L ++   +SI   GHTDA         N  LS  
Sbjct: 265 KNVLFEFNKADLLTASEEEINVLTTILRNN-NKLSIEIYGHTDAV---GSKERNLELSNQ 320

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           RA +    L+ SG+ E+R+  I G+   +    +        NRR++
Sbjct: 321 RAKAVASYLIDSGIDENRVKWI-GYGSSKPVADNTTEEGRTQNRRVE 366


>gi|237509510|ref|ZP_04522225.1| OmpA family membrane protein [Burkholderia pseudomallei MSHR346]
 gi|235001715|gb|EEP51139.1| OmpA family membrane protein [Burkholderia pseudomallei MSHR346]
          Length = 558

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|83716533|ref|YP_439774.1| OmpA family domain-containing protein [Burkholderia thailandensis
           E264]
 gi|167616356|ref|ZP_02384990.1| OmpA family domain protein [Burkholderia thailandensis Bt4]
 gi|257142917|ref|ZP_05591179.1| OmpA family domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83650358|gb|ABC34422.1| OmpA family domain protein [Burkholderia thailandensis E264]
          Length = 333

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+   L ++ ++L  +    + I GHTD          N  LS  RA + 
Sbjct: 231 FDTDKAQVKPESKAQLDEMAKLLTANPNLKVYIVGHTDNQ---GQFAHNVDLSQKRADAV 287

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
            Q L  +  ++  R+    G A      ++  +   + NRR++++
Sbjct: 288 AQTLATTYRIAPGRLVA-KGVASLSPVASNGDEAGRAQNRRVELV 331


>gi|37679816|ref|NP_934425.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|37198561|dbj|BAC94396.1| outer membrane protein [Vibrio vulnificus YJ016]
          Length = 348

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++KRL  L +++   LS        D        +       I  ID +    F  +S+ 
Sbjct: 183 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 238

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L K   +L  H+   +++ GH DA+        N +L++DRA    + L   
Sbjct: 239 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 295

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           G+  +RI+  S           +       NRR+ I ++ 
Sbjct: 296 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 334


>gi|192360671|ref|YP_001983282.1| OmpA family protein [Cellvibrio japonicus Ueda107]
 gi|190686836|gb|ACE84514.1| OmpA family protein [Cellvibrio japonicus Ueda107]
          Length = 217

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   +  R G  + +I       F  SS+    +   VL  + +V+A  +   I + G
Sbjct: 89  LQGTGVQVRREGNNLYLI-MPGNITFATSSADIRSDFFPVLNSVAKVVAEFNQTSIRVTG 147

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328
           HTD++        N  LS  RA S    L    V+  RI +  G+       ++D     
Sbjct: 148 HTDST---GSDSINQPLSERRADSVAMYLRSQKVASARI-QAYGYGSRYPVASNDTPTGR 203

Query: 329 SANRRIDILVEDRQ 342
             NRR+++ +   +
Sbjct: 204 EQNRRVELELIPNE 217


>gi|152995997|ref|YP_001340832.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150836921|gb|ABR70897.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 311

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 16/236 (6%)

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
            +     +  +  R +  +            + +  R   +   L +    ++       
Sbjct: 58  NEAEQAVKTAEEPRTDEMLGRHLMFVAYSKVEIAENRAKSRMLVLERKQLSQQRNEATLA 117

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF---ETTRTGILISII 229
                L   +  AM+ K   + L  ++ +      +    + +     + T  G+++++ 
Sbjct: 118 ARNRELGVARNDAMQSKADAEKL--RMEANAERNRSQEFQRQLGMLNAKATNRGMIMTLG 175

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           D      F    +   P  ++ L K+   L    +  I I G+TD+         N RLS
Sbjct: 176 DLS----FATGKAKLQPSVLIDLDKLVVFLNKYADRSIVIEGNTDSV---GSEALNLRLS 228

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+  G++  R++ +           +D       NRR+DI++ + +
Sbjct: 229 QHRASAVRDYLVGKGINSARLT-VVANGEGNPLDTNDSKLGRQHNRRVDIVISNTE 283


>gi|15836965|ref|NP_297653.1| hypothetical protein XF0363 [Xylella fastidiosa 9a5c]
 gi|9105193|gb|AAF83173.1|AE003888_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 242

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S+  P+    L+ +   L    + +I + G+T
Sbjct: 106 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 164

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D+         N RLS DRA +    L   GV  +R+  ISG          +++   S 
Sbjct: 165 DSI---GSDVVNQRLSEDRAGAVASYLAGQGVQRERME-ISGMGKRYPIADNSTEAGRSK 220

Query: 331 NRRIDILVED 340
           NRR++I +  
Sbjct: 221 NRRVEIHLIP 230


>gi|163744900|ref|ZP_02152260.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381718|gb|EDQ06127.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45]
          Length = 221

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
               T TG  + I+      +F   S+   P     L  + + +       + + GHTD+
Sbjct: 96  RVVITNTGDRL-IVTLPQDILFATDSTSVAPGLRDDLAALAQNVNIYQNSTLQVVGHTDS 154

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
                 A  N +LS  RA +   +L+ +GV + R+ +  G    +   ++      S NR
Sbjct: 155 D---GEAAYNQQLSERRAQAVGNILLSNGVPQQRL-QTFGRGESQPVASNLSAAGKSQNR 210

Query: 333 RIDILVED 340
           R++I++  
Sbjct: 211 RVEIVILP 218


>gi|261839369|gb|ACX99134.1| flagellar motor protein MotB [Helicobacter pylori 52]
          Length = 255

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248
            ++++S  S   + N            G ++  IDQ       +  +F+ + S     + 
Sbjct: 79  EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138

Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +VL++ G +
Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGAN 198

Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            +++   S +        +D       N R++I 
Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|257126222|ref|YP_003164336.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050161|gb|ACV39345.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 225

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           I+       FD   S   P    +L  + E L      + I GHTD+   +     N  L
Sbjct: 73  IVFDEGALNFDFDKSYVKPYYNGLLGILKEFLNEKDYNVGITGHTDS---KGSDAYNMAL 129

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            + RA +    L++ G+S  RI  I           +  D   + NRRI+  V +R G
Sbjct: 130 GMRRAKAVKDRLIELGLSSSRIRGIDSKGESEPIATNETDEGRAQNRRIEFDVRNRDG 187


>gi|91224878|ref|ZP_01260138.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01]
 gi|91190424|gb|EAS76693.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01]
          Length = 330

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA S    L  +G+  DR++ + G         +        NRR++++V
Sbjct: 268 ERRAQSVADYLTAAGIGSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318


>gi|76819194|ref|YP_336761.1| OmpA family protein [Burkholderia pseudomallei 1710b]
 gi|76583667|gb|ABA53141.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b]
          Length = 558

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|254181403|ref|ZP_04888000.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|184211941|gb|EDU08984.1| ompA family protein [Burkholderia pseudomallei 1655]
          Length = 215

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P   ++L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAITPAFTLLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213


>gi|254299760|ref|ZP_04967209.1| OmpA family protein [Burkholderia pseudomallei 406e]
 gi|157809397|gb|EDO86567.1| OmpA family protein [Burkholderia pseudomallei 406e]
          Length = 558

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|126444048|ref|YP_001061161.1| OmpA family protein [Burkholderia pseudomallei 668]
 gi|126223539|gb|ABN87044.1| OmpA family protein [Burkholderia pseudomallei 668]
          Length = 558

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|154174678|ref|YP_001407584.1| outer membrane fibronectin-binding protein [Campylobacter curvus
           525.92]
 gi|112803800|gb|EAU01144.1| outer membrane fibronectin-binding protein [Campylobacter curvus
           525.92]
          Length = 337

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
           N   GV+ + T    +I + D      FD  S    P     ++K+ + +       + +
Sbjct: 210 NTPAGVVVDETGCEKVIVLRDLDVNFAFD--SYKVGPGYAAEIKKVADFMGEHPEYRVVL 267

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD+         N +LS  RA +  +VL   GV + +IS I G+   R    +    
Sbjct: 268 AGHTDSV---GKEAYNQKLSEKRAKAVAEVLEGYGVEKKKISTI-GYGELRPIATNSTKE 323

Query: 327 MNSANRRID 335
             + NRR++
Sbjct: 324 GRAQNRRVE 332


>gi|325914015|ref|ZP_08176371.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539784|gb|EGD11424.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 241

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 104 NTGIDVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +     ++D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|260221771|emb|CBA30668.1| hypothetical protein Csp_C24700 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 214

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L  + KKR Q+  +++   L   +A  +  G     T     I I     + +F  +S  
Sbjct: 50  LESEVKKRQQEEQRRM--ALEKALAIPLQSG---RVTLNNGRIGIS---GSVLFAVNSDQ 101

Query: 244 PLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAY 296
              +   +L+ +   L        E++ + G TD        R   DN  LS  R+ +  
Sbjct: 102 LRADGRQLLKSLVPPLQVYLGERDEMLMVSGFTDNVAVSGANRHFADNLELSAQRSLTVT 161

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
           + L++ G+   R+   + F   +   +  ++   + NRR++
Sbjct: 162 RALIEEGMPASRVFAAA-FGAQQPVASNQNESGRALNRRVE 201


>gi|152982971|ref|YP_001354367.1| outer membrane protein A precursor [Janthinobacterium sp.
           Marseille]
 gi|151283048|gb|ABR91458.1| outer membrane protein A precursor [Janthinobacterium sp.
           Marseille]
          Length = 206

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            ++  PE    L  +   L      + I  GHTD+         N +LS+ RA +    L
Sbjct: 105 KAVLKPEGKAKLDDLTSKLNGLNLEVIIAVGHTDSV---GSDAYNQKLSVRRAEAVKAYL 161

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342
           +  GV   R+    G    +      +    + NRR++I +V  R+
Sbjct: 162 VGKGVDAKRVY-TEGKGEKQPVATNKTAAGRAQNRRVEIEVVGTRK 206


>gi|114769969|ref|ZP_01447579.1| OmpA domain protein [alpha proteobacterium HTCC2255]
 gi|114549674|gb|EAU52556.1| OmpA domain protein [alpha proteobacterium HTCC2255]
          Length = 210

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 17/176 (9%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
             + N  +        L       L    +++   L G        G L + T   ++++
Sbjct: 30  GDDSNGTIKRAIAGGALGAAIGNELDVQEEELRKNLEG-------SGALIKNTGNQLIVT 82

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           +        FD  SS         L ++ + L    +  + I GHTD          N +
Sbjct: 83  L---PEAITFDIDSSEVRYSLEDTLIRLSKSLNKYPKTNVEIIGHTDNV---GGQDYNQK 136

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           LS  RA S   +L ++ VS  RI    G       ++++     ++NRR++I++  
Sbjct: 137 LSTRRAESVSSILAQNDVSRSRIKA-YGRGEIEPMMSNNSSKGRASNRRVEIMITP 191


>gi|327405866|ref|YP_004346704.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327321374|gb|AEA45866.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 687

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           IS I+      FD   +I  PE+ + L K+ ++L  +    I I GHTD    R  A  N
Sbjct: 564 ISNINPLKNVFFDLDKAILRPESFLELNKLRDLLKANPTMKIEIGGHTDT---RGDAAKN 620

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------------SANR 332
            +LS  RA S  + L+  G+   R+S   GF   +  I  D +N              NR
Sbjct: 621 MQLSDARAKSVKEYLIAQGIEASRLSS-KGFGATKPIITDDVINKMATEKEKEKAHQENR 679

Query: 333 RID 335
           R +
Sbjct: 680 RTE 682


>gi|268315730|ref|YP_003289449.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333264|gb|ACY47061.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252]
          Length = 211

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 15/126 (11%)

Query: 221 RTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
             G+ +   + D     +F  +S+         L  + E LA   E    I G+TD  P 
Sbjct: 81  DGGLRVAVELADD----LFAPASATLTDRGRRRLDALAERLARFPEHRFRIEGYTDNVPI 136

Query: 278 RNI----ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330
            +        NW L+  RA +  +  +++ G+  +R   +S +   R    +D       
Sbjct: 137 GDRLKERFPSNWELAAARAATVARYFIEAHGLDPERFEVVS-YGPTRPIGPNDTPEGRRL 195

Query: 331 NRRIDI 336
           NRR+ I
Sbjct: 196 NRRVVI 201


>gi|111223535|ref|YP_714329.1| hypothetical protein FRAAL4134 [Frankia alni ACN14a]
 gi|111151067|emb|CAJ62776.1| conserved hypothetical protein; putative OmpA/MotB domain [Frankia
           alni ACN14a]
          Length = 252

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283
           I I +     +FD  S      +   L     ++    +   I +RGHTDA+     A  
Sbjct: 134 ILIFNSD--ALFDTGSFAI--GSTDTLDATIRLINSHYAGGDIQVRGHTDAT---GSAAS 186

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSA-NRRID 335
           N  LS  RA +  + L+  G+    ++ + G               + DP     NRR++
Sbjct: 187 NQTLSERRADTVRRYLVDHGIRASSVTSV-GLGSTHPLAEEANPDGSPDPEGQRFNRRVE 245

Query: 336 ILVEDRQ 342
           ++V   Q
Sbjct: 246 LVVRSHQ 252


>gi|4530367|gb|AAD22006.1| major outer membrane protein [Pseudomonas fluorescens]
          Length = 344

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+    +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKENSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  + G+   R     A+D   + NRR++
Sbjct: 295 KQVLTNQYGVESSRVQSV-GYGESRPVADNATDAGRAVNRRVE 336


>gi|88798991|ref|ZP_01114572.1| flagellar motor protein [Reinekea sp. MED297]
 gi|88778218|gb|EAR09412.1| flagellar motor protein [Reinekea sp. MED297]
          Length = 253

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 19/184 (10%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
                D+     + E      +         ++  L D+  ++S   + ++ D +     
Sbjct: 74  TPTGPDVFNPFFRPEPLPGTNIDNANSEVYAQESSLLDIQAQLSDAYAQMIQDRL----- 128

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276
           F  +     I I    N+  F  +S+    +   VL ++ ++L  +   + + G++ AS 
Sbjct: 129 FSVSGNESWIEIQ-LANSITFSDNSADINDQAEAVLYELAKLLQGNALPVRVEGYSGASE 187

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334
            R      W LS  RA +  + L ++GV+ +R+S  + F+ ++     D  P      RI
Sbjct: 188 VRG-----WELSSSRAVAVVEYLQRAGVAGERLSSAA-FSSYQPSGEGDLTPG-----RI 236

Query: 335 DILV 338
            I+V
Sbjct: 237 QIVV 240


>gi|167578636|ref|ZP_02371510.1| hypothetical protein BthaT_10878 [Burkholderia thailandensis TXDOH]
 gi|167616778|ref|ZP_02385409.1| hypothetical protein BthaB_10778 [Burkholderia thailandensis Bt4]
 gi|257140710|ref|ZP_05588972.1| hypothetical protein BthaA_16123 [Burkholderia thailandensis E264]
          Length = 575

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +   P+ +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 376 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 435

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L  + +            R  + SG    +    +    +   NRR+D+L
Sbjct: 436 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488


>gi|254189637|ref|ZP_04896147.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157937315|gb|EDO92985.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 558

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545


>gi|302135199|ref|ZP_07261189.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato NCPPB
           1108]
          Length = 344

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+  P ++  ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFNKSVVKPNSMGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A+D   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATDAGRAVNRRVE 336


>gi|149921395|ref|ZP_01909848.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149817715|gb|EDM77180.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 224

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 12/200 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                     +E       +T  + +         P  +    L         D   +  
Sbjct: 25  ASDTEPTQSLAEAPGSTALATSEQPTDAPVLAQASPEAAPPSDLDQDGIPDTLDQCPEDP 84

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             + G   ++    +L       I I          F    S   P +  +L+ I  VL 
Sbjct: 85  EDVDGDADEDGCPDLLCRLDPCEIAI-----FEKVYFAYDESTIEPRSFPLLKDIAFVLG 139

Query: 261 HST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +S    I I GHTD+   +  +  N  LS  R  S  + L+  GV++ ++S + G+    
Sbjct: 140 YSPQVTIQIAGHTDS---KGRSEYNEGLSQRRVDSVREHLLSLGVNDQQLSSV-GYGEMT 195

Query: 320 LKIAS--DPMNSANRRIDIL 337
               +  +   + NRR++ L
Sbjct: 196 PIDTNRTEAGRAHNRRVEFL 215


>gi|28869499|ref|NP_792118.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968086|ref|ZP_03396231.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1]
 gi|301384938|ref|ZP_07233356.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato Max13]
 gi|302061987|ref|ZP_07253528.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato K40]
 gi|28852741|gb|AAO55813.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927066|gb|EEB60616.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1]
 gi|330875557|gb|EGH09706.1| outer membrane porin OprF [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330967341|gb|EGH67601.1| outer membrane porin OprF [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331016208|gb|EGH96264.1| outer membrane porin OprF [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 344

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+  P ++  ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFNKSVVKPNSMGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A+D   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATDAGRAVNRRVE 336


>gi|315179386|gb|ADT86300.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218]
          Length = 332

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
             + ++  F  +S+    E    L  +   L    +  + I GHTD++        N +L
Sbjct: 215 FQKLDSKSFAHNSAKMSEEGKAQLGDLVAFLNEHPQANVEITGHTDST---GAEAYNQKL 271

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA      L + G+   RI+   G        ++        NRR++I++
Sbjct: 272 SEKRAQGVSDALQEKGIDAARITA-KGEGESNPIASNATAAGREQNRRVEIVI 323


>gi|262404049|ref|ZP_06080604.1| outer membrane protein A precursor [Vibrio sp. RC586]
 gi|262349081|gb|EEY98219.1| outer membrane protein A precursor [Vibrio sp. RC586]
          Length = 335

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             F+  SS      I  L  I   L +       I GHTD++        N  LS DRA 
Sbjct: 226 GFFENDSSRLSHNVIEQLSNIAATLNNHPQSRAVIVGHTDST---GSTAYNQLLSEDRAQ 282

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            A  +L++ GV+  +I    G         +      + NRRI+I +
Sbjct: 283 EAANLLIELGVTPTQIEW-RGLGESNPIADNHTADGRAQNRRIEITI 328


>gi|207108745|ref|ZP_03242907.1| flagellar motor protein MotB [Helicobacter pylori HPKX_438_CA4C1]
          Length = 150

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 227 SIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIAR 282
           SI+   ++ +F+ + S     + ++ L++I +++    +   I++RG TD +P  +   +
Sbjct: 6   SILKLPSSLLFENATSDAINQDMMLYLERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFK 65

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            ++ L+ +RAY   +VL++ GV  +++   S +        +D       N R++I 
Sbjct: 66  SHYELAANRAYRVMKVLIQYGVDPNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 121


>gi|134296618|ref|YP_001120353.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134139775|gb|ABO55518.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 213

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     SI G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQ 212


>gi|15643441|ref|NP_228485.1| motility protein B [Thermotoga maritima MSB8]
 gi|4981200|gb|AAD35760.1|AE001740_6 motility protein B [Thermotoga maritima MSB8]
          Length = 289

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +++     +  E    G LI + D      F+  S+    E   +L K+G+ V+ H+T V
Sbjct: 89  LSEEYKGKITVEERDEGTLIVLKDM---VFFEPGSAKLTAEAKELLAKVGQIVIEHTTNV 145

Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + + G+ D  P    +I   NW LS  RA S     +   + E R+
Sbjct: 146 LEVYGYADDRPPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 190



 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNL 76
              ++       W   Y+D +T+L+ FF+ +  ++       + +        +    ++
Sbjct: 4   KKREEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGRPPSV 63

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +   K I +E   P  +S+  I   +     +    + +   ++       +   F   +
Sbjct: 64  LMGGKSINEE---PLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFEPGS 120

Query: 137 SQQSEHCKNSLTRDSE 152
           ++ +   K  L +  +
Sbjct: 121 AKLTAEAKELLAKVGQ 136


>gi|39934843|ref|NP_947119.1| porin [Rhodopseudomonas palustris CGA009]
 gi|39648693|emb|CAE27215.1| OmpA/MotB domain, possible porin [Rhodopseudomonas palustris
           CGA009]
          Length = 441

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
            +S +       F++ S++    +  +L K+   +       I + G+TD          
Sbjct: 328 RVSALASAEKISFERRSAVIDKASQPLLDKLAAAIKQCPAVTIEVAGYTDG---AGKKSA 384

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           N  LS  RA +    L K G+   ++    G+   +   A+D     + NRRI+ +V+
Sbjct: 385 NIALSKRRAEAVVASLTKVGIGSVKLVA-EGYGSAKPIAANDTAEGRAQNRRIEFVVK 441


>gi|156977475|ref|YP_001448381.1| hypothetical protein VIBHAR_06262 [Vibrio harveyi ATCC BAA-1116]
 gi|156529069|gb|ABU74154.1| hypothetical protein VIBHAR_06262 [Vibrio harveyi ATCC BAA-1116]
          Length = 334

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  +  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 215 EEYGSGTFEFDSAKLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNLKLS 271

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA +    L+ +G+  DR + ++G         +        NRR+ + V
Sbjct: 272 ERRAQAVADYLIAAGIDADRFT-VTGMGEEDPVADNSTHEGREQNRRVVVHV 322


>gi|39937842|ref|NP_950118.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           CGA009]
 gi|192293627|ref|YP_001994232.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|39651702|emb|CAE30224.1| OmpA/MotB domain [Rhodopseudomonas palustris CGA009]
 gi|192287376|gb|ACF03757.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 464

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 97/288 (33%), Gaps = 17/288 (5%)

Query: 56  ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           A D   +++I                   D + PP      K  ++    +     D  +
Sbjct: 188 AKDLGGRESIAAALRTLPDGYTVGEN---DIEAPPYVFRAYKDPVAGQVTLDGYVPDNNV 244

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
            +       ++  N     +        K  L   +     L + +     ++  E +  
Sbjct: 245 HAALAAATGRKFFNEKVVDNLKASVGAPKGFLEAATPALGALSRLSTGTLVLSDREVHLS 304

Query: 176 PPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                E      R    ++L +   + + LS   A   V   + +    G+L      + 
Sbjct: 305 GDALYEVAANQIRGGLNKELPQGWTVKADLSVKPAAAPVDASVCQQLFNGLL-----AKA 359

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           T  F+ +S+    ++  +L ++ E         I + GHTD+         N  LS  RA
Sbjct: 360 TIQFESASASIDKDSAALLDRLIETAMRCPNAKIEVAGHTDSD---GDPAFNQSLSEKRA 416

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
                 ++++G+S +R+ +  G+        +D     + NRRID +V
Sbjct: 417 REVVDYMVRAGLSPERL-QAFGYGSKIPVAGNDTDAGKAKNRRIDFVV 463


>gi|329888485|ref|ZP_08267083.1| inner membrane lipoprotein yiaD [Brevundimonas diminuta ATCC 11568]
 gi|328847041|gb|EGF96603.1| inner membrane lipoprotein yiaD [Brevundimonas diminuta ATCC 11568]
          Length = 224

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S   P  + VL  +  VL      ++ + GHTD+         N  LS  RA S 
Sbjct: 119 FATNQSDLDPRFLPVLDDVARVLNQYDRSMVDVVGHTDS---SGGDAINQPLSERRAASV 175

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              L+  GV  +RI  ++G +        A+    + NRR++IL+  
Sbjct: 176 AAHLINRGVMRERIY-VAGMSARAPIGSNATPEGKAQNRRVEILIRP 221


>gi|15641208|ref|NP_230840.1| putative lipoprotein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587785|ref|ZP_01677544.1| lipoprotein, putative [Vibrio cholerae 2740-80]
 gi|121728252|ref|ZP_01681285.1| lipoprotein, putative [Vibrio cholerae V52]
 gi|147673077|ref|YP_001216765.1| putative lipoprotein [Vibrio cholerae O395]
 gi|153819084|ref|ZP_01971751.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|153823238|ref|ZP_01975905.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|227081367|ref|YP_002809918.1| putative lipoprotein [Vibrio cholerae M66-2]
 gi|229505212|ref|ZP_04394722.1| outer membrane protein [Vibrio cholerae BX 330286]
 gi|229511118|ref|ZP_04400597.1| outer membrane protein [Vibrio cholerae B33]
 gi|229518237|ref|ZP_04407681.1| outer membrane protein [Vibrio cholerae RC9]
 gi|229608231|ref|YP_002878879.1| outer membrane protein [Vibrio cholerae MJ-1236]
 gi|255745601|ref|ZP_05419549.1| outer membrane protein [Vibrio cholera CIRS 101]
 gi|262158324|ref|ZP_06029440.1| outer membrane protein [Vibrio cholerae INDRE 91/1]
 gi|262169483|ref|ZP_06037175.1| outer membrane protein [Vibrio cholerae RC27]
 gi|298498705|ref|ZP_07008512.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655673|gb|AAF94354.1| lipoprotein, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547949|gb|EAX58030.1| lipoprotein, putative [Vibrio cholerae 2740-80]
 gi|121629503|gb|EAX61929.1| lipoprotein, putative [Vibrio cholerae V52]
 gi|126510367|gb|EAZ72961.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|126519252|gb|EAZ76475.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|146314960|gb|ABQ19499.1| putative lipoprotein [Vibrio cholerae O395]
 gi|227009255|gb|ACP05467.1| putative lipoprotein [Vibrio cholerae M66-2]
 gi|227013112|gb|ACP09322.1| putative lipoprotein [Vibrio cholerae O395]
 gi|229344952|gb|EEO09926.1| outer membrane protein [Vibrio cholerae RC9]
 gi|229351083|gb|EEO16024.1| outer membrane protein [Vibrio cholerae B33]
 gi|229357435|gb|EEO22352.1| outer membrane protein [Vibrio cholerae BX 330286]
 gi|229370886|gb|ACQ61309.1| outer membrane protein [Vibrio cholerae MJ-1236]
 gi|255736676|gb|EET92073.1| outer membrane protein [Vibrio cholera CIRS 101]
 gi|262022296|gb|EEY41005.1| outer membrane protein [Vibrio cholerae RC27]
 gi|262029765|gb|EEY48413.1| outer membrane protein [Vibrio cholerae INDRE 91/1]
 gi|297543038|gb|EFH79088.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 223

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +  + L   + D+ V+ V     +  + +      N   F  +S          L+ +  
Sbjct: 85  QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L    +  + I GHTD++        N  LS  RA S    L+  GV+  R     G  
Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 195

Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342
                 +++       NRR++I +   +
Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223


>gi|120603950|ref|YP_968350.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120564179|gb|ABM29923.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
          Length = 364

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---- 281
           + I+      +F    +    E   +L      L      + + GH  ASP R+      
Sbjct: 113 VQILSIDADVLFGPGETRLSKEGERLLATFAPTLRTIEHPLLVAGH--ASPPRDEQGAGF 170

Query: 282 --------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSAN 331
                     +W LSL RA S Y+ L   GV   R+  + GF     +    +     AN
Sbjct: 171 RLRAEGTLSPSWMLSLRRATSVYRALRDLGVPSSRLI-LEGFGDGHPRHDAFTATGRRAN 229

Query: 332 RRIDILVEDR 341
           RR+D++++ R
Sbjct: 230 RRVDLVLDKR 239


>gi|78189221|ref|YP_379559.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Chlorobium chlorochromatii CaD3]
 gi|78171420|gb|ABB28516.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 422

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   PE++  +  + +++    E   S+ GHTD+        +N  LS  RA + 
Sbjct: 321 FDINKATIKPESMGTINYVVKMMQEHPELKFSVEGHTDSD---GADANNQTLSEARAQAI 377

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L++SG++++R++   G+   +    ++     + NRR++ +
Sbjct: 378 VNKLIESGIAKERLTS-KGWGESKPITNNETAEGKAQNRRVEFI 420


>gi|149371333|ref|ZP_01890819.1| outer membrane protein A [unidentified eubacterium SCB49]
 gi|149355471|gb|EDM44030.1| outer membrane protein A [unidentified eubacterium SCB49]
          Length = 560

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 93/270 (34%), Gaps = 20/270 (7%)

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
               E   + K+  +        +  + + +  +    + +            S+     
Sbjct: 294 TRVIEIPGETKMIKTTVMATPPTTRVIDVPAVTKTMTKKVMVTPPTTERIEIASKTAPVK 353

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
            T  + +   + +  ++ K+  K      P      I A  +  ++  LA   S     +
Sbjct: 354 KTIFTNETTRVEEIPEITKTFTKRVMTTPPTTRAVPIDAQSKTLKVTKLASDASVEEEIV 413

Query: 207 VADNIVKGVLFETTRTGILI------SIIDQRNTPM-FDKSSSIPLPETIVVLQ-KIGEV 258
            A           T+ G+        ++++ +  P+ ++  S+    +   ++  ++  V
Sbjct: 414 PATTTTVTKEVLQTKGGLTTWTEVECALVEYQALPINWNLGSATLTAQAKNIIDTRLMPV 473

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           LA +    + I  HTD+   R     N  LS  RA +    L   G++   +   +GF  
Sbjct: 474 LAQNPGVKLEIASHTDS---RGGKAANQDLSERRAQAVAVYLQSKGINNS-LLVANGFGE 529

Query: 318 HRLKIA-------SDPMNSANRRIDILVED 340
            RL          ++  ++ANRR +  + +
Sbjct: 530 TRLLNRCADGVSCTEKEHAANRRTEFRLIN 559


>gi|21242231|ref|NP_641813.1| OmpA family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107654|gb|AAM36349.1| OmpA family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 241

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  I++    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 104 NTGIEVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +     ++D   + N
Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219

Query: 332 RRIDILVEDRQG 343
           RR++I +   + 
Sbjct: 220 RRVEIRLIPLRA 231


>gi|330951777|gb|EGH52037.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae Cit 7]
          Length = 344

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV  +R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGANRVNSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|152999646|ref|YP_001365327.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|217974400|ref|YP_002359151.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|151364264|gb|ABS07264.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|217499535|gb|ACK47728.1| OmpA/MotB domain protein [Shewanella baltica OS223]
          Length = 369

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +   +  F   S++  P     ++++   L  + E  + I GH  AS        N  LS
Sbjct: 251 EDVGSIQFANDSAVVKPVFYKDIERLANYLNKNPEFTVEIAGH--ASHVGKPEY-NMVLS 307

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
             RA +  ++L+   G+S+ R++   G+   +  +A D   +  ANRRI+ +V  
Sbjct: 308 DKRAAAVAKILVDKYGISQSRVTS-KGYGETQPLVAGDSKEAYAANRRIEAVVTT 361


>gi|111223898|ref|YP_714692.1| hypothetical protein FRAAL4505 [Frankia alni ACN14a]
 gi|111151430|emb|CAJ63147.1| hypothetical protein; putative signal peptide; putative OmpA/MotB
           domain [Frankia alni ACN14a]
          Length = 384

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  S +   P     L  +  VL      + + G+TD       +  N  LSL+RA +A 
Sbjct: 281 FPVSGARLSPSAQARLDSVAAVLRGGDLAVLVGGYTDT---SGPSALNQALSLNRAQAAA 337

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             L   GV  D + + +GF        +      +ANRRI+I+
Sbjct: 338 DYLTSRGVPAD-LVRAAGFGSREPVAGNGTPQGRAANRRIEII 379


>gi|319788654|ref|YP_004148129.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317467166|gb|ADV28898.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 348

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LPE+   + ++ E+L       + + GHTD +     A  N RLS  R+ + 
Sbjct: 247 FATDRTEILPESQPQIDQVVELLQQDPQLNLGVEGHTDDT---GDAGHNLRLSEGRSNAV 303

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
            + L+  G+   R++  +GF   R    +  +   + NRR++++
Sbjct: 304 VKALVARGIDAARLTS-AGFGSTRPVADNGSEEGKARNRRVELV 346


>gi|325272915|ref|ZP_08139241.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51]
 gi|324101950|gb|EGB99470.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51]
          Length = 145

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+   P     L  +       +   I + G T
Sbjct: 4   NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYQPLNNLASSFKQFNQNTIEVVGFT 62

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
           D++      + N  LS  RA +    L   GV   R+  + G    +   ++   N  + 
Sbjct: 63  DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDSSRL-SVRGMGPDQPIASNADANGRAQ 118

Query: 331 NRRIDILVED 340
           NRR+++ ++ 
Sbjct: 119 NRRVEVNLKP 128


>gi|229588852|ref|YP_002870971.1| hypothetical protein PFLU1321 [Pseudomonas fluorescens SBW25]
 gi|229360718|emb|CAY47576.1| putative outer membrane protein [Pseudomonas fluorescens SBW25]
          Length = 231

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARD 283
           I I D      F   S+         L  +   L     +  + + GHTD+         
Sbjct: 120 IVIRDVH----FQFDSAQLTAADKTKLDTVATRLKQEAPSAQLRVSGHTDSV---GKDAY 172

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           N RLS  RA+S    L+ +GV       ++G           +    + NRR +I +
Sbjct: 173 NQRLSEKRAHSVTDYLIGAGVPRSNFVSVTGAGESHPVADNKTAEGRALNRRTEIQI 229


>gi|325923199|ref|ZP_08184883.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
 gi|325546323|gb|EGD17493.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
          Length = 249

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               E  R G  I++    +   FD   S   P+    L  +   L    + ++ + GHT
Sbjct: 112 NTGIEVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 170

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D+         N RLS +RA +  Q L   GV  +R+  + +G  +      +D   + N
Sbjct: 171 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAQN 227

Query: 332 RRIDI 336
           RR++I
Sbjct: 228 RRVEI 232


>gi|323491313|ref|ZP_08096498.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546]
 gi|323314439|gb|EGA67518.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546]
          Length = 222

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C+ +  +++  G+    S      I       +   + +     ++   +        
Sbjct: 15  SGCQATQRQNATTGETETNSATQGALIGAIAGAAVGLATGDDAKERRKHALIGAAGGAAV 74

Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253
               G   D     +  +   +G+ +        ++   N   F  SS          L+
Sbjct: 75  GGGVGYYFDQQEAALRKQLLNSGVQVERVGENQLLLRLENGIGFQSSSYQLDSSIHNTLR 134

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + ++L    +  + I GHTD++        N  LS  RA S    L+  GV+  R    
Sbjct: 135 GVAQILVEYPDTSLVIDGHTDST---GSDTTNQVLSERRAESVRSYLVSQGVAAGRAIA- 190

Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            G          ++    + NRR++I +   +
Sbjct: 191 RGNGERYPLCTNSTTEGRACNRRVEIQILPLK 222


>gi|315223848|ref|ZP_07865696.1| inorganic diphosphatase [Capnocytophaga ochracea F0287]
 gi|314946178|gb|EFS98179.1| inorganic diphosphatase [Capnocytophaga ochracea F0287]
          Length = 919

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   S      +   L+ I  +L    +  I + G+TD +        N +LS  R
Sbjct: 811 DRTYFKTGSDELTEGSEQQLKNIVAILKAYPKAAIRLGGYTDNT---GSVEGNKKLSERR 867

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           A S    L+  G ++ ++S     A H L  A+D     + NRRIDI +  +
Sbjct: 868 ANSVLNKLVALGANKAQLSAQGYGAEHPLCPANDTPECKAKNRRIDIRLTAK 919


>gi|256820715|ref|YP_003141994.1| membrane-bound proton-translocating pyrophosphatase [Capnocytophaga
           ochracea DSM 7271]
 gi|256582298|gb|ACU93433.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga ochracea
           DSM 7271]
          Length = 919

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   S      +   L+ I  +L    +  I + G+TD +        N +LS  R
Sbjct: 811 DRTYFKTGSDELTEGSEQQLKNIVAILKAYPKAAIRLGGYTDNT---GSVEGNKKLSERR 867

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           A S    L+  G ++ ++S     A H L  A+D     + NRRIDI +  +
Sbjct: 868 ANSVLNKLVALGANKAQLSAQGYGAEHPLCPANDTPECKAKNRRIDIRLTAK 919


>gi|254447506|ref|ZP_05060972.1| OmpA family protein [gamma proteobacterium HTCC5015]
 gi|198262849|gb|EDY87128.1| OmpA family protein [gamma proteobacterium HTCC5015]
          Length = 1980

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 235 PMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFR----NIARDNWRLSL 289
           P F+  S+    E      +I  +V     + I++ GH D  P R    +I  DN  LSL
Sbjct: 472 PRFESFSAELGEEDQQHFDQILSQVDKQRVQRITVIGHADTRPIRARSQSIYADNQALSL 531

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342
            RA  A +    + G+  D++  + G       +   S   N+ANRR++I++E  Q
Sbjct: 532 ARANVAAEYARQRLGLEADKVD-VLGKGDSFPLLKGRSGEDNAANRRVEIVIESLQ 586


>gi|167913324|ref|ZP_02500415.1| OmpA family membrane protein [Burkholderia pseudomallei 112]
          Length = 542

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529


>gi|332977323|gb|EGK14111.1| OmpA/MotB family protein [Psychrobacter sp. 1501(2011)]
          Length = 552

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           +G D+      +  ++K          +  ++A        ++ + I++  + +  DN+ 
Sbjct: 326 EGNDVRIDAPDQAQLDKLVADIKAAAPELNVIAAGPLDLDAEIKQSIANATTAM--DNLG 383

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           +    +     + + +I+      F+   +        VL +  EV+ +     + I GH
Sbjct: 384 ENPDPKDVARALSLQVIN------FEVDKADIPEVNKAVLDRAVEVMKNVPNMQLMILGH 437

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD+         N  LS  RA S  Q L+  GV   ++    G         +   N   
Sbjct: 438 TDSD---GDDAHNQELSQRRAESVKQYLVSKGVDASKLM-TKGMGETDPIATNQTDNGKF 493

Query: 330 ANRRIDILV 338
            NRRI+  V
Sbjct: 494 RNRRIEFTV 502


>gi|311104908|ref|YP_003977761.1| outer membrane protein A [Achromobacter xylosoxidans A8]
 gi|310759597|gb|ADP15046.1| outer membrane protein A [Achromobacter xylosoxidans A8]
          Length = 193

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 87  FFDFDKSTLKPEGRQLLDQVAQQARGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G        ++      + NRR++I +V  R+
Sbjct: 144 VKTYLVSKGIDPNRIY-TEGKGELNPIASNKTKEGRAQNRRVEIEIVGSRK 193


>gi|261210647|ref|ZP_05924939.1| outer membrane protein [Vibrio sp. RC341]
 gi|260840132|gb|EEX66712.1| outer membrane protein [Vibrio sp. RC341]
          Length = 223

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I GHTD++
Sbjct: 99  VQVVRVGENQLLLRMENGIGFTSSSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDST 158

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S    L+  GV+  R     G          ++    + NRR
Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLAQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 215 VEIQILPLK 223


>gi|45659294|ref|YP_003380.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602540|gb|AAS72017.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 428

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
           F+    G  IS+    ++  F   S   L  +  +L  +   L  +    I I GHTD  
Sbjct: 309 FQELEKGKSISL----DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTD-- 362

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNSANRR 333
                ++DN  LS +RA +    L+K G+   RI    G       +   +P  +  NRR
Sbjct: 363 -LNGDSQDNLILSRNRANAVKDYLVKRGIDSQRII-TDGKGSSEPIVPMKNPETDYKNRR 420

Query: 334 IDILVEDR 341
            +  +  R
Sbjct: 421 TEFQIISR 428


>gi|24217036|ref|NP_714517.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24198445|gb|AAN51535.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601]
          Length = 428

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
           F+    G  IS+    ++  F   S   L  +  +L  +   L  +    I I GHTD  
Sbjct: 309 FQELEKGKSISL----DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTD-- 362

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNSANRR 333
                ++DN  LS +RA +    L+K G+   RI    G       +   +P  +  NRR
Sbjct: 363 -LNGDSQDNLILSRNRANAVKDYLVKRGIDSQRII-TDGKGSSEPIVPMKNPETDYKNRR 420

Query: 334 IDILVEDR 341
            +  +  R
Sbjct: 421 TEFQIISR 428


>gi|107028365|ref|YP_625460.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116686361|ref|YP_839608.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105897529|gb|ABF80487.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116652076|gb|ABK12715.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 220

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++  P     L  +   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTPAATAALDTL---LNRQADRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D  +  +G        ++D     + NRR++I ++
Sbjct: 172 DAVAGYLREHGLKADSFAA-AGHGEANPAASNDTAEGRARNRRVEISLQ 219


>gi|189475074|gb|ACE00211.1| OmpA [Vibrio alginolyticus]
          Length = 330

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA S    L  +G+  DR++ + G         +        NRR++++V
Sbjct: 268 ERRAQSVADYLTAAGIGSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318


>gi|167896642|ref|ZP_02484044.1| OmpA family membrane protein [Burkholderia pseudomallei 7894]
          Length = 541

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 423 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 479

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 480 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 528


>gi|319944281|ref|ZP_08018557.1| outer membrane protein A [Lautropia mirabilis ATCC 51599]
 gi|319742576|gb|EFV94987.1| outer membrane protein A [Lautropia mirabilis ATCC 51599]
          Length = 220

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            F    ++   E    L  I   L      + +  GHTD+         N RLS+ RA +
Sbjct: 111 FFGFDRAVLKDEGKQKLDDIVNQLDGVALEVIVAVGHTDSV---GPEAYNQRLSVRRAEA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +R+    G    +    +      + NRR++I +V  RQ
Sbjct: 168 VKAYLVSKGIEANRVY-TEGKGEAQPVADNKTKEGRAKNRRVEIEVVGSRQ 217


>gi|288917360|ref|ZP_06411727.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
 gi|288351225|gb|EFC85435.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
          Length = 409

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S         L K+ + L      + + GHTD++        N  LS+DRA +A 
Sbjct: 307 FAVGESTLDASVRAGLDKVAQALLPGDLTVLVGGHTDST---GPLAFNQALSMDRARAAR 363

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           + L++ GV  +R+ +++GF   R    +      +ANRR+D+
Sbjct: 364 EYLVQRGVPAERV-RVAGFGPERPVADNATVAGRAANRRVDV 404


>gi|254848320|ref|ZP_05237670.1| lipoprotein [Vibrio cholerae MO10]
 gi|254844025|gb|EET22439.1| lipoprotein [Vibrio cholerae MO10]
          Length = 222

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +  + L   + D+ V+ V     +  + +      N   F  +S          L+ +  
Sbjct: 84  QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 138

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L    +  + I GHTD++        N  LS  RA S    L+  GV+  R     G  
Sbjct: 139 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 194

Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342
                 +++       NRR++I +   +
Sbjct: 195 ERFPLCSNNTAEGRACNRRVEIQILPLK 222


>gi|310778794|ref|YP_003967127.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748117|gb|ADO82779.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
          Length = 208

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +S   ++     + K+ +  +  N      +       + A      L+     I S ++
Sbjct: 18  SSADEETAMLNKMEKNLNKIEENNATTGSMIDQYKTRILDAKTNVANLEKDINAIDSFIN 77

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
                     ++        LI   D     +FD + S    +   +L  + E L     
Sbjct: 78  PETVFEKNGVIVKRERDQLTLIMPTD----VVFDFNKSEIKEDFKPLLDSLYEALTIYKG 133

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + I GHTD          N +LS  RA SA + L+  G++  RI    G +      +
Sbjct: 134 LSVKIDGHTDNI---GSYDYNLKLSQKRAESAKEYLVSKGLNAGRII-TEGHSFSTPAAS 189

Query: 324 SDPMNSA--NRRIDILVE 339
           +        NRRI+++++
Sbjct: 190 NATQAGRDKNRRIEVVIK 207


>gi|258626412|ref|ZP_05721259.1| putative lipoprotein [Vibrio mimicus VM603]
 gi|258581464|gb|EEW06366.1| putative lipoprotein [Vibrio mimicus VM603]
          Length = 223

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I GHTD++
Sbjct: 99  VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 158

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  LS  RA S    L+  GV+  R     G        +++       NRR
Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNNTAEGRACNRR 214

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 215 VEIQILPLK 223


>gi|83717203|ref|YP_440080.1| hypothetical protein BTH_II1886 [Burkholderia thailandensis E264]
 gi|83651028|gb|ABC35092.1| OmpA domain protein [Burkholderia thailandensis E264]
          Length = 594

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +   P+ +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 395 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 454

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L  + +            R  + SG    +    +    +   NRR+D+L
Sbjct: 455 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507


>gi|114321676|ref|YP_743359.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228070|gb|ABI57869.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 216

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIAR 282
            IS+    +  +F   S    P     L+ + E +     V  I + GHTD     + A 
Sbjct: 95  RISV---DSEALFGFDSDELTPGGRANLRNVIERINAMERVDSIRVNGHTD--HIGSAAY 149

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSA-------NRR 333
            N  LS  RA +    +++ GV ++ I+   G+   R       +   SA       NRR
Sbjct: 150 -NQELSERRAAAVRTFMVQQGVDDNLITS-RGYGEDRPVKECPDNLSGSALIECLAPNRR 207

Query: 334 IDILVE 339
           ++I VE
Sbjct: 208 VEIHVE 213


>gi|153950607|ref|YP_001399766.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152962102|gb|ABS49563.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
          Length = 573

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD       P +I +L   +  + A    +I + GHTD       A+ N  LSL RA 
Sbjct: 445 SLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVAGHTD---ITGDAQANQILSLKRAE 501

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    ++     +ANRR++I +  +
Sbjct: 502 ALRDWMLSTSDVSPT-CFAVQGYGATRPVATNESAEGRAANRRVEISLVPQ 551


>gi|119357024|ref|YP_911668.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354373|gb|ABL65244.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 369

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  ++   PE+  V+ +I +++       + I GHTD+         N  LS  R+ + 
Sbjct: 268 FDTGNATLKPESNGVINEIVKMMNTYPVIRLRIEGHTDS---DGDTSANQILSEKRSAAV 324

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L+K G++  R+  IS F   +    +      + NRR++ +
Sbjct: 325 KAALIKRGIAAVRL-SISSFGETKPVADNTTSEGKANNRRVEFV 367


>gi|325103802|ref|YP_004273456.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324972650|gb|ADY51634.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 633

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD +      ++   L  + + L  + T  I I+GHTD        + N+ LS +R
Sbjct: 526 KNIFFDTNKYDIKDDSKSELAILIDFLNENKTVNIEIQGHTDNI---GDDKANFVLSENR 582

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S  + L+  G+   R+ +  GF       ++D     + NRR + L+
Sbjct: 583 AKSVLKYLVNEGIDSKRL-RYKGFGETAPIDSNDNIIGRANNRRTEFLI 630


>gi|257094585|ref|YP_003168226.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047109|gb|ACV36297.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 184

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+   P+    L  +G  L     +    +I GH+D    R     N RLS  RA 
Sbjct: 80  FETNSASLTPKGKQSLDVVGRALNSEKLTAYKFAIEGHSDP---RGGEDYNLRLSQARAE 136

Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           S    L +S  +   R+  + G    +L   + P    NRR+ I
Sbjct: 137 SVVGYLEQSHQIEPARLKPV-GKGPTQLLNPARPEAPENRRVTI 179


>gi|94499177|ref|ZP_01305715.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Oceanobacter sp. RED65]
 gi|94428809|gb|EAT13781.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Oceanobacter sp. RED65]
          Length = 294

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288
            R+   F    +    +    L  I   +    EV  I I GH+DA        +N RLS
Sbjct: 174 SRSKVFFPGGGAALDKQARKKLDLIALYVKADPEVQAIYIDGHSDAL---GRRYNNRRLS 230

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
            DRA    + L++ G+  + I               A+    + NRR+ I +E
Sbjct: 231 EDRALKVNEYLIERGLDAE-IITTRYHGERYPVASNATAAGRAQNRRVTIRLE 282


>gi|269122521|ref|YP_003310698.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616399|gb|ACZ10767.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 358

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F     +P       L+ I  +L  +      I++ GHTD++     A  N +LS++RA 
Sbjct: 240 FKVDGKVPNEAEQRDLRTIANILNAAVVDGGTINVVGHTDST---GSAAYNQKLSVERAQ 296

Query: 294 SAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           +  ++L + G+    +   I+G    +    ++ +     NRR+++ 
Sbjct: 297 NVARLLREYGLKNTVKFGTITGKGLTQPMATNNTVEGRYQNRRVELF 343


>gi|153215326|ref|ZP_01949939.1| lipoprotein, putative [Vibrio cholerae 1587]
 gi|153826671|ref|ZP_01979338.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|153829618|ref|ZP_01982285.1| putative lipoprotein [Vibrio cholerae 623-39]
 gi|183179599|ref|ZP_02957810.1| lipoprotein, putative [Vibrio cholerae MZO-3]
 gi|229515575|ref|ZP_04405034.1| outer membrane protein [Vibrio cholerae TMA 21]
 gi|229520377|ref|ZP_04409802.1| outer membrane protein [Vibrio cholerae TM 11079-80]
 gi|229525804|ref|ZP_04415209.1| outer membrane protein [Vibrio cholerae bv. albensis VL426]
 gi|229529718|ref|ZP_04419108.1| outer membrane protein [Vibrio cholerae 12129(1)]
 gi|254226715|ref|ZP_04920292.1| lipoprotein, putative [Vibrio cholerae V51]
 gi|262191649|ref|ZP_06049827.1| outer membrane protein [Vibrio cholerae CT 5369-93]
 gi|297578794|ref|ZP_06940722.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124114769|gb|EAY33589.1| lipoprotein, putative [Vibrio cholerae 1587]
 gi|125620776|gb|EAZ49133.1| lipoprotein, putative [Vibrio cholerae V51]
 gi|148874894|gb|EDL73029.1| putative lipoprotein [Vibrio cholerae 623-39]
 gi|149739533|gb|EDM53761.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|183013010|gb|EDT88310.1| lipoprotein, putative [Vibrio cholerae MZO-3]
 gi|229333492|gb|EEN98978.1| outer membrane protein [Vibrio cholerae 12129(1)]
 gi|229339385|gb|EEO04402.1| outer membrane protein [Vibrio cholerae bv. albensis VL426]
 gi|229342475|gb|EEO07468.1| outer membrane protein [Vibrio cholerae TM 11079-80]
 gi|229347344|gb|EEO12304.1| outer membrane protein [Vibrio cholerae TMA 21]
 gi|262032491|gb|EEY51051.1| outer membrane protein [Vibrio cholerae CT 5369-93]
 gi|297536388|gb|EFH75221.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|327483893|gb|AEA78300.1| Outer membrane protein [Vibrio cholerae LMA3894-4]
          Length = 223

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           +  + L   + D+ V+ V     +  + +      N   F  +S          L+ +  
Sbjct: 85  QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L    +  + I GHTD++        N  LS  RA S    L+  GV+  R     G  
Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 195

Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342
                 +++       NRR++I +   +
Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223


>gi|254262577|ref|ZP_04953442.1| OmpA family protein [Burkholderia pseudomallei 1710a]
 gi|254213579|gb|EET02964.1| OmpA family protein [Burkholderia pseudomallei 1710a]
          Length = 542

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529


>gi|167818176|ref|ZP_02449856.1| OmpA family membrane protein [Burkholderia pseudomallei 91]
          Length = 541

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 423 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 479

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 480 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 528


>gi|146306454|ref|YP_001186919.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574655|gb|ABP84187.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 210

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    E+   ++ + + +    +    + GHTD+         N  LS  RA + 
Sbjct: 105 FDFDKSQVKQESYGDIKALADFMKQYPQTSTVVEGHTDSV---GSDAYNQGLSERRANAV 161

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            +VL+ + GV  +R+  + G+   R     A+    + NRR++
Sbjct: 162 REVLVNQYGVESNRVQAV-GYGESRPVADNATAEGRAINRRVE 203


>gi|212283809|gb|ACJ23322.1| outer membrane protein OmpA [Vibrio parahaemolyticus]
          Length = 301

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 183 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 239

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA +    +  +G+  DR++ + G         +        NRR++++V
Sbjct: 240 ERRAQAVADYITGAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 290


>gi|28901041|ref|NP_800696.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837129|ref|ZP_01989796.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
 gi|260362470|ref|ZP_05775403.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
 gi|260879890|ref|ZP_05892245.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|260894565|ref|ZP_05903061.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|260900439|ref|ZP_05908834.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|28809554|dbj|BAC62529.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749546|gb|EDM60292.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
 gi|308086367|gb|EFO36062.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|308092443|gb|EFO42138.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|308107064|gb|EFO44604.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|308113361|gb|EFO50901.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
          Length = 329

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           ++  T  F+  S+         L      L    +  + I G+TD+      A  N +LS
Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             RA +    +  +G+  DR++ + G         +        NRR++++V
Sbjct: 268 ERRAQAVADYITGAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318


>gi|311104068|ref|YP_003976921.1| inner membrane lipoprotein YiaD [Achromobacter xylosoxidans A8]
 gi|310758757|gb|ADP14206.1| inner membrane lipoprotein YiaD [Achromobacter xylosoxidans A8]
          Length = 215

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 224 ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           + I +++  +  +         FD   +   P  + VL  +   L    E    + GHTD
Sbjct: 88  LGIDVVEMPDGSLKVNIPSGVSFDTDKTQLKPALLPVLDSVARSLNQHPELRAKVVGHTD 147

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331
           ++        N  LS++RA S    L K GV+  R++ + G   +      A+    + N
Sbjct: 148 ST---GALAHNQTLSVNRAKSVTDYLGKQGVAAGRLT-VEGRGPNDPIGDNATAEGRALN 203

Query: 332 RRIDILV 338
           RR++I +
Sbjct: 204 RRVEIYL 210


>gi|332532726|ref|ZP_08408600.1| outer membrane protein similar to peptidoglycan-associated
           (lipo)protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037753|gb|EGI74203.1| outer membrane protein similar to peptidoglycan-associated
           (lipo)protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 351

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  ++S    + +  ++K+   L    +  + + GHT A        + W LS  RA + 
Sbjct: 241 FPNNASAVSTQYLDDIEKVSAFLKEYPDTTVLLEGHTSA--VGKATYNKW-LSKKRADAV 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            + L+  G++EDRI+ + G    RLK  ++    N+ NRR++  ++  +
Sbjct: 298 AKQLVADGIAEDRITTV-GLGEERLKNDANTKAANAENRRVEAHIKTIK 345


>gi|110638407|ref|YP_678616.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281088|gb|ABG59274.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 509

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   FD  S+    E+ + L ++ E++  ++T  + I  HTD          N +LS  R
Sbjct: 402 NNLFFDFDSASLTKESELELDRVIEMMKTNATMQVEISAHTDDM---GSDAYNQKLSQLR 458

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S  + L   G+   R+    G+      + +D     + NRR++  +
Sbjct: 459 AESVVKYLTLHGIITTRLVA-KGYGESVPSVPNDTEENRAKNRRVEFKI 506


>gi|167848084|ref|ZP_02473592.1| OmpA family protein [Burkholderia pseudomallei B7210]
          Length = 531

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518


>gi|33603081|ref|NP_890641.1| putative outer membrane protein [Bordetella bronchiseptica RB50]
 gi|33568712|emb|CAE34470.1| putative outer membrane protein [Bordetella bronchiseptica RB50]
          Length = 215

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           + E     + ++I    +   FD   S   P  + VL  +   L    E    + GHTD+
Sbjct: 92  VVEMPDGSLKVNI---PSNVSFDTDKSQLKPALLPVLDSVARALNQHPELRTKVVGHTDS 148

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332
           +     A  N +LS++RA +    L K GV++ R++ + G   +      A+    +ANR
Sbjct: 149 T---GSAAHNQQLSVNRARAVTSYLGKQGVAQGRMT-VEGRGANDPVGDNATAEGRAANR 204

Query: 333 RIDILV 338
           R+++ +
Sbjct: 205 RVEVYL 210


>gi|300902742|ref|ZP_07120699.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|300405215|gb|EFJ88753.1| OmpA family protein [Escherichia coli MS 84-1]
          Length = 211

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI +  G       
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197

Query: 322 IASDPMN--SANRR 333
            ++      + NRR
Sbjct: 198 ASNSTAEGKAQNRR 211


>gi|262371750|ref|ZP_06065029.1| outer membrane protein A [Acinetobacter junii SH205]
 gi|262311775|gb|EEY92860.1| outer membrane protein A [Acinetobacter junii SH205]
          Length = 346

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S   P+    + K+ E LA        I GHTD +      + N RLSL RA
Sbjct: 227 RVFFDTNKSDIKPQYKSEIAKVAEKLAEYPNATARIEGHTDNT---GPRKLNERLSLARA 283

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         +LV+  
Sbjct: 284 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFAAITGSRTVLVQPG 342

Query: 342 Q 342
           Q
Sbjct: 343 Q 343


>gi|78067236|ref|YP_370005.1| OmpA/MotB family protein [Burkholderia sp. 383]
 gi|77967981|gb|ABB09361.1| OmpA/MotB family protein [Burkholderia sp. 383]
          Length = 214

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     SI G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFQPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNALAQRGVNGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQA 213


>gi|85706177|ref|ZP_01037272.1| OmpA domain protein [Roseovarius sp. 217]
 gi|85669341|gb|EAQ24207.1| OmpA domain protein [Roseovarius sp. 217]
          Length = 219

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +   I+      +F   S          L K+ + L    
Sbjct: 85  EAELRQQLDNDVQIVNTGDRL---ILTMPQDILFPVDSFTVASVLRDDLLKVAQSLQAYP 141

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + + GHTD+      A  N  LS  RA +   VL   GVS  R+ +  G    +   
Sbjct: 142 DTTVQVVGHTDSD---GAASYNQSLSERRANAVADVLASGGVSYGRL-RAFGRGEDQPVA 197

Query: 323 AS--DPMNSANRRIDILVED 340
           ++      + NRR++I++  
Sbjct: 198 SNLTPQGKAQNRRVEIVILP 217


>gi|118578882|ref|YP_900132.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501592|gb|ABK98074.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 417

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+    L+++ + LA       +I GHTD          N +LS  RA S 
Sbjct: 311 FDTNKSNIKPQYNDELKRVADFLAEFPTAKGAIEGHTDNV---GGKAYNMKLSQRRANSV 367

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L+K+  V+ +RIS   G    +   ++   +    NRRI+
Sbjct: 368 RSYLIKTFNVAPERISA-KGHGLTKPVASNKTADGRKQNRRIE 409


>gi|315922614|ref|ZP_07918854.1| predicted protein [Bacteroides sp. D2]
 gi|313696489|gb|EFS33324.1| predicted protein [Bacteroides sp. D2]
          Length = 405

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           + I+  V+ + T  G  I  +D  N   F+   S     +   L KI  ++  +   + I
Sbjct: 280 EEILDLVVAQKTIAGKTICAVDVIN---FEFGKSAINKNSYAYLDKIAMLMQRTNLSVEI 336

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           +GHTD          N  LS  RA + Y  L+K GV   ++   + +   +   ++D   
Sbjct: 337 KGHTDNV---GKEDFNMELSRKRAKAVYDYLIKKGVGSSKL-SYTYYGMTKPIASNDTEE 392

Query: 329 SA--NRRIDILVE 339
               NRR++  ++
Sbjct: 393 GRLINRRVEFEIK 405


>gi|288801213|ref|ZP_06406668.1| lipoprotein PG3 [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331824|gb|EFC70307.1| lipoprotein PG3 [Prevotella sp. oral taxon 299 str. F0039]
          Length = 225

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A  +    + E T   G+    +   +  +F  + ++    +   L K   +
Sbjct: 70  MDKVAQETAAKVKSAKIEEVTDANGLKAVKVTFDSGILFSTNKAVLSQTSKNDLAKFATI 129

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  + +  + I GHTD++    I   N  LS  RA S    L   GV+  +   + G   
Sbjct: 130 LKENRDCHVDIYGHTDSTGNDGI---NIPLSNSRARSVVNYLESCGVTGSQFKNVQGKGS 186

Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343
                ++   +    NRR+++ +   Q 
Sbjct: 187 SEPVASNSTASGRQQNRRVEVYLYASQA 214


>gi|260174346|ref|ZP_05760758.1| OmpA/MotB domain-containing protein [Bacteroides sp. D2]
          Length = 375

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
           + I+  V+ + T  G  I  +D  N   F+   S     +   L KI  ++  +   + I
Sbjct: 250 EEILDLVVAQKTIAGKTICAVDVIN---FEFGKSAINKNSYAYLDKIAMLMQRTNLSVEI 306

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           +GHTD          N  LS  RA + Y  L+K GV   ++   + +   +   ++D   
Sbjct: 307 KGHTDNV---GKEDFNMELSRKRAKAVYDYLIKKGVGSSKL-SYTYYGMTKPIASNDTEE 362

Query: 329 SA--NRRIDILVE 339
               NRR++  ++
Sbjct: 363 GRLINRRVEFEIK 375


>gi|296390816|ref|ZP_06880291.1| hypothetical protein PaerPAb_21793 [Pseudomonas aeruginosa PAb1]
          Length = 237

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G  I +I       F   S+   P     L  +       +   I I G
Sbjct: 97  MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD++      + N  LS  RA S    L   GV   R+    G    +   ++      
Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211

Query: 329 SANRRIDI 336
           + NRR+++
Sbjct: 212 AQNRRVEV 219


>gi|150025563|ref|YP_001296389.1| lipoprotein YiaD precursor [Flavobacterium psychrophilum JIP02/86]
 gi|149772104|emb|CAL43580.1| Probable lipoprotein YiaD precursor [Flavobacterium psychrophilum
           JIP02/86]
          Length = 231

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 18/152 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   A+KIS +L G            E    GI + + +      FD + S       
Sbjct: 79  NKMDKQARKISESLPGA---------KVERVGEGIRLVLGENAIR--FDTNKSTLTASAK 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+ +V     +  I I G+TD+         N +LS  RA S    L   G++  R
Sbjct: 128 ANLDKLVKVFTEYPDTDIQIYGYTDS---SGADDYNLKLSEQRAASVKTYLSAKGLASTR 184

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            +  SG         ++  +  S NRR++  +
Sbjct: 185 FN-TSGLGEADPIAPNETADGKSQNRRVEFAI 215


>gi|152986735|ref|YP_001350031.1| hypothetical protein PSPA7_4687 [Pseudomonas aeruginosa PA7]
 gi|150961893|gb|ABR83918.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 237

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G  I +I       F   S+   P     L  +       +   I I G
Sbjct: 97  MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD++      + N  LS  RA S    L   GV   R+    G    +   ++      
Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211

Query: 329 SANRRIDI 336
           + NRR+++
Sbjct: 212 AQNRRVEV 219


>gi|15596030|ref|NP_249524.1| hypothetical protein PA0833 [Pseudomonas aeruginosa PAO1]
 gi|107100290|ref|ZP_01364208.1| hypothetical protein PaerPA_01001315 [Pseudomonas aeruginosa PACS2]
 gi|116048755|ref|YP_792445.1| hypothetical protein PA14_53500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254239185|ref|ZP_04932508.1| hypothetical protein PACG_05376 [Pseudomonas aeruginosa C3719]
 gi|254245120|ref|ZP_04938442.1| hypothetical protein PA2G_06007 [Pseudomonas aeruginosa 2192]
 gi|313105709|ref|ZP_07791972.1| hypothetical protein PA39016_000110006 [Pseudomonas aeruginosa
           39016]
 gi|9946728|gb|AAG04222.1|AE004518_3 hypothetical protein PA0833 [Pseudomonas aeruginosa PAO1]
 gi|115583976|gb|ABJ09991.1| hypothetical protein PA14_53500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171116|gb|EAZ56627.1| hypothetical protein PACG_05376 [Pseudomonas aeruginosa C3719]
 gi|126198498|gb|EAZ62561.1| hypothetical protein PA2G_06007 [Pseudomonas aeruginosa 2192]
 gi|310878474|gb|EFQ37068.1| hypothetical protein PA39016_000110006 [Pseudomonas aeruginosa
           39016]
          Length = 237

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G  I +I       F   S+   P     L  +       +   I I G
Sbjct: 97  MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD++      + N  LS  RA S    L   GV   R+    G    +   ++      
Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211

Query: 329 SANRRIDI 336
           + NRR+++
Sbjct: 212 AQNRRVEV 219


>gi|325288156|ref|YP_004263946.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324323610|gb|ADY31075.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 638

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P   + LQK+  VL    +  I I  HTD+   R     N  LS +RA S 
Sbjct: 529 FDYDKYDITPRAEIELQKVLFVLKEFPKTKIKIESHTDS---RGKDAYNLELSDNRAKST 585

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
            + L+  GV  DRI   +GF   +LK         S+  +  NRR D ++  +
Sbjct: 586 RRYLVSKGVDIDRIESANGFGELKLKNKCSNGVKCSEQEHLVNRRSDFIIVAK 638


>gi|269119353|ref|YP_003307530.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613231|gb|ACZ07599.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 178

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++++   +I++    L+ +        E      +I +    +   FD   S   PE  
Sbjct: 25  KQMRNDTIRINAMEVELINEKTEPAEKKEVKEEKKVIRL--GEDKLYFDFDDSRVKPEYY 82

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             L+   EV+ +S+  ++I G+TD+   +  A  N +LSL RA +    LM+ G++E+ I
Sbjct: 83  GELRAAAEVIKNSSMRVNITGYTDS---KGSAEYNEKLSLRRAEAVKAKLMEFGLNENYI 139

Query: 310 SKISGFAHHRLKIAS-------DPM-NSANRRIDI 336
           + + G         +       +P   + NRRI++
Sbjct: 140 AGVRGLGESNPIAPNTKSDGKDNPEGRAKNRRIEL 174


>gi|71736714|ref|YP_274287.1| OprF [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486264|ref|ZP_05640305.1| OprF [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627226|ref|ZP_06460180.1| OprF [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650179|ref|ZP_06481522.1| OprF [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486585|ref|ZP_07004644.1| outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71557267|gb|AAZ36478.1| OprF [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298158911|gb|EFH99972.1| outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320324974|gb|EFW81046.1| OprF [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329128|gb|EFW85126.1| OprF [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867622|gb|EGH02331.1| OprF [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330881064|gb|EGH15213.1| OprF [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330888250|gb|EGH20911.1| OprF [Pseudomonas syringae pv. mori str. 301020]
 gi|330988403|gb|EGH86506.1| OprF [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010567|gb|EGH90623.1| OprF [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 344

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|24375803|ref|NP_719846.1| OmpA family protein [Shewanella oneidensis MR-1]
 gi|24350753|gb|AAN57290.1|AE015865_4 OmpA family protein [Shewanella oneidensis MR-1]
          Length = 201

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
           +   KG   +    G + SI +++    +F  +S+   PE    ++++   L       +
Sbjct: 51  NETAKGAGTDNYGCGQIKSINERKEINVLFPNNSAYIAPEYYPQIEEVAIFLRQYPTTKV 110

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325
           +I GHT  +        N  LS +RA +   VL  + G+   R++ I G+   R  +   
Sbjct: 111 TIEGHTSRT---GTDETNKELSQERANAVTAVLAERFGIDRSRLTAI-GYGSSRPIVLEQ 166

Query: 326 PMNS--ANRRI 334
              +   NRR+
Sbjct: 167 TPEAEIRNRRV 177


>gi|242281267|ref|YP_002993396.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242124161|gb|ACS81857.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 276

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             +  L+ +   + + FE+ R    + I+      +F   S+    E   +L  +  VL 
Sbjct: 87  EPIKPLLWEFAEEDLRFESNRF---VQILSIGADVLFTPDSTSLSIEGTRILDTVLPVLK 143

Query: 261 HSTEVISIRGHTDASP------FRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRI 309
                + + GHT          +R   RD     +W++SL+R+ + Y  L+++G+  + +
Sbjct: 144 RVKHPVLVAGHTSILRDELGEDYRVEDRDLTPDISWKISLNRSLAVYNYLIRNGMDSE-M 202

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
            K+  F   R +  +        NRR+D++++ R  
Sbjct: 203 LKMEAFGKFRPRHPNSTPEGRKMNRRVDLVLDTRSA 238



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
          +      P     W I ++D MT+++ FF+++  ++  D+  K  +              
Sbjct: 3  RKKKPPEPEGQPLWLITFSDLMTLMLTFFVLLVSMSVVDERRKLVVLGSIIGTFGFGSKG 62

Query: 80 SKGIFDEQNP 89
             + D Q+ 
Sbjct: 63 YDVLSDTQSR 72


>gi|170703075|ref|ZP_02893898.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132016|gb|EDT00521.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 215

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     S+ G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTASVVGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 165 VNALVQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQ 212


>gi|16265946|gb|AAL16679.1|AF358690_1 flagellar motor rotation protein [Helicobacter hepaticus]
          Length = 98

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 238 DKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTDASP--FRNIARDNWRLSLDRA 292
           D  S+      + + LQ++  ++        I +RG+TD +P    +  +DN+ LS  R+
Sbjct: 1   DSGSAEINNSDVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSSARS 60

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            S  + L+K+G+S +RI   SG+  H+    +D  ++ NR
Sbjct: 61  LSVMKNLIKNGISPERI-SFSGYGEHQAVAPND--SALNR 97


>gi|257451630|ref|ZP_05616929.1| Outer membrane porin F [Fusobacterium sp. 3_1_5R]
 gi|257466946|ref|ZP_05631257.1| Outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563]
          Length = 183

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSI 243
           ++DL+ + +   +    D   K +  +    + G+ I       I+      +FD +   
Sbjct: 27  IRDLSTEGNQNFAIEDIDAAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFNKYE 86

Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
                   L+ +   L A++   I I G+TD   F      N  LS++RA +    L+  
Sbjct: 87  VKNGIKPSLRTLANALGANADIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVAQ 143

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           G  E+ I  I G+       ++D     + NRR++ ++
Sbjct: 144 GAIENNI-SIEGYGKQNPVASNDTESGRARNRRVEFII 180


>gi|332561144|ref|ZP_08415462.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
 gi|332274942|gb|EGJ20258.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
          Length = 453

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277
              + I  +   +  +F  + +   P+   ++  +  VLA        + + GHTD  P 
Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
              N    N  LS  RA +   +L++ GV    I    G A       +      + NRR
Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444

Query: 334 IDILVEDR 341
           ++I +E R
Sbjct: 445 VEIRIEKR 452


>gi|117918603|ref|YP_867795.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117610935|gb|ABK46389.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 487

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  S   LPE   V++ +   L  + +    + GHTD    +     N  LS  RA +
Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
             ++L  S G+   ++  + G   H      + +     NRR+++++  
Sbjct: 437 IVKLLTTSHGIQTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484


>gi|254228271|ref|ZP_04921700.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262394176|ref|YP_003286030.1| outer membrane protein [Vibrio sp. Ex25]
 gi|151939344|gb|EDN58173.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262337770|gb|ACY51565.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 204

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            + +   +F   S +  P     ++++ + L       I I+G+   +     A  N  L
Sbjct: 76  QEMQIRVLFANDSDVINPIFTEQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 132

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           S  RA +  + LM +G+S DR++ I G+    L         ++ NRR+   V   +G
Sbjct: 133 SKRRAENVRKELMMNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 189


>gi|83720098|ref|YP_441413.1| ompA family protein [Burkholderia thailandensis E264]
 gi|83653923|gb|ABC37986.1| ompA family protein [Burkholderia thailandensis E264]
          Length = 261

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 154 FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 211 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 259


>gi|74318813|ref|YP_316553.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
 gi|74058308|gb|AAZ98748.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259]
          Length = 266

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE    L +  E L       + + GHTD+   +     N  LS  RA + 
Sbjct: 163 FAYDKATLRPEAREKLDQAVETLKGWGEGTVEVGGHTDS---KGSEAYNMELSRRRAEAV 219

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            + L+  G+  +++     +   +      +D     NRR+++
Sbjct: 220 REYLIGKGIPAEQLV-TKAYGESQPIADNGNDIGRFKNRRVEL 261


>gi|70728655|ref|YP_258404.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68342954|gb|AAY90560.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 229

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283
           I I D      F   S+         L  I   L    S+  + + GHTD+         
Sbjct: 118 IVIRDVH----FHFDSAKLTDADKTKLNTIVTRLKQEASSAQLRVTGHTDSV---GSDAY 170

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           N +LS  RA+S  + L+ +G+       ++G    +      +    + NRR +I +
Sbjct: 171 NQKLSDKRAHSVVEYLISNGIPRSSFVSVTGAGESKPVADNKTAEGRAMNRRTEIQI 227


>gi|304397573|ref|ZP_07379450.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB]
 gi|304354745|gb|EFM19115.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB]
          Length = 405

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           Y  P             + L DL ++++  ++          +       G  + I   +
Sbjct: 234 YQTPLPQITAGRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291
              +F +  ++  P    +L ++   +      I +   TD  P  N     ++  S  R
Sbjct: 287 ---LFAEQGTVINPVGRALLARVSNAMKDVKGTILVSVFTDDHPVDNSRFASSYEFSFAR 343

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A +  Q+L    +++    +  G       + +D     + NRR++I +
Sbjct: 344 ARTITQLLQVQ-LNDGHTVRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391


>gi|218778089|ref|YP_002429407.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759473|gb|ACL01939.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 377

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E    ++KI  +L  +    + + GHTD    +     N +LSL+RA + 
Sbjct: 275 FDFDSYEIKKEYQSCIKKIVAILRANPGLKLIVEGHTDN---KGSKAYNDKLSLNRADAV 331

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
              ++  G+  +R+S   G+   +   ++D     + NRR+
Sbjct: 332 IDSMVGKGIMPERLSA-KGYGFSKPVASNDTEEGRARNRRV 371


>gi|218885327|ref|YP_002434648.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756281|gb|ACL07180.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 345

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +S+        +L +   +L      + + GHT +         N +LS  RA S  
Sbjct: 244 FALNSAKLDATATSILVETAAILKSKKGSVEVAGHTCSL---GTDEYNQKLSEARAKSVK 300

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             L+K GV   R+    G+   + K  +    +   NRR+++
Sbjct: 301 DFLVKQGVESSRLI-TKGYGESKPKYDNSTEETRKLNRRVEL 341


>gi|163738369|ref|ZP_02145784.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|161388290|gb|EDQ12644.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 211

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        VL K    +         + GHTDA    +    N  L L RA +A
Sbjct: 68  FAFDSAQLDGNARAVLDKQAHWIRQFPEVRFRVFGHTDA--VGSAGY-NKSLGLRRARAA 124

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +  F   +  I +      NRR
Sbjct: 125 VNYLVSRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 162


>gi|304384331|ref|ZP_07366742.1| lipoprotein PG3 [Prevotella marshii DSM 16973]
 gi|304334647|gb|EFM00929.1| lipoprotein PG3 [Prevotella marshii DSM 16973]
          Length = 226

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             K+ +     V +  V+    E T   G+    +   +  +F  + +     +   L  
Sbjct: 71  MDKVKAQTQAQVQNAKVE----EVTDVNGLKAVKVTFDSGILFALNKAELNATSKNELMN 126

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              VL  +T+  + I+G+TD++        N  LS  RA +    L + GV   +   + 
Sbjct: 127 FSNVLKKNTDCQVDIQGYTDST---GNDDINLPLSNSRAQAVVSYLAQCGVPYSQFKNVK 183

Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           G+        +        NRR+++ +   + 
Sbjct: 184 GYGSSNPVADNSTEAGRKQNRRVEVYIYAGEA 215


>gi|299140724|ref|ZP_07033862.1| lipoprotein PG3 [Prevotella oris C735]
 gi|298577690|gb|EFI49558.1| lipoprotein PG3 [Prevotella oris C735]
          Length = 225

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           A  I    + E T   G+    +   +  +F  + +     +   L K  +VL  +++  
Sbjct: 77  AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTSSSKNDLAKFSKVLKDNSDCH 136

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GHTD +    I   N  LS  RA S    L + GVS  +   + G         + 
Sbjct: 137 VDIYGHTDTTGNDGI---NIPLSNRRAESVVNYLKQCGVSGSQFQNVVGKGSAEPVADNS 193

Query: 326 PMNSA--NRRIDILVEDRQG 343
                  NRR+++ +   Q 
Sbjct: 194 TAAGRKQNRRVEVYLYASQA 213


>gi|317402072|gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobacter xylosoxidans
           C54]
          Length = 495

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--------------- 264
           T  G+ +SIID+     F   S+I  P+    +  + +                      
Sbjct: 92  TTAGLSVSIIDKGEQ--FAPGSAILTPQAAKAMADLADTYRDVAAASASAKDRDAVNARN 149

Query: 265 ---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I + GHTD +     ++ N  LS  RA +  ++ +  G   D+I    G       
Sbjct: 150 NAMRILLVGHTDDT---GSSQLNADLSEARARAVAKIFVSRGFRADQIF-YQGAGETLPI 205

Query: 322 IASD--PMNSANRRIDIL 337
             +      + NRR++++
Sbjct: 206 ADNHSAAGRARNRRVEVV 223


>gi|268316295|ref|YP_003290014.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333829|gb|ACY47626.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252]
          Length = 209

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+   A ++   L              E    GIL++     +  +FD  S+   PE  
Sbjct: 60  QRMDRQAAEMQQEL---------PDARIERVGEGILVTF---DSGILFDFDSATLRPEAR 107

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+++ E L    E  + I GHTD++        N RLS  RA +A   LM+ G+   R
Sbjct: 108 EKLRRLAESLKKYPETEVLIVGHTDST---GPEEYNQRLSERRAEAAAAFLMQQGIRPSR 164

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           I +  G        ++        NRR++I +   + 
Sbjct: 165 I-RTMGKGETEPIASNATEEGRQLNRRVEIAIFASEA 200


>gi|260891212|ref|ZP_05902475.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260859239|gb|EEX73739.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 172

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
             N   FD +S+    E    L+K+ + +    + ISI G+TD+   +     N  LSL 
Sbjct: 65  DANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDS---KGTREYNRELSLR 121

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
           RA S  + L+  G+S +RI +  G         +D     +ANRRI+I
Sbjct: 122 RAESLEEKLIDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169


>gi|329117988|ref|ZP_08246701.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465876|gb|EGF12148.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 226

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +     +  R+G  I ++   N   F   S+         L    + L    +  +SI
Sbjct: 85  ENLANTGVDVQRSGDQIKLVMPENVT-FATGSATLSTNAQNALAAAAQTLTQYPDTTLSI 143

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            GHTD +        N  LS  RA +    L   GV+  R+    G    +   ++    
Sbjct: 144 NGHTDNT---GSDAINAPLSQRRAQAVASFLQSRGVNGSRL-ATYGHGSRQPVASNATAE 199

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR++IL+   Q
Sbjct: 200 GRAQNRRVEILINPDQ 215


>gi|49081952|gb|AAT50376.1| PA0833 [synthetic construct]
          Length = 238

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G  I +I       F   S+   P     L  +       +   I I G
Sbjct: 97  MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD++      + N  LS  RA S    L   GV   R+    G    +   ++      
Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211

Query: 329 SANRRIDI 336
           + NRR+++
Sbjct: 212 AQNRRVEV 219


>gi|126463896|ref|YP_001045009.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105707|gb|ABN78237.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 254

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 24/249 (9%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P    ++   D  +     +         +   +        +  +  +       +SL 
Sbjct: 23  PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPDSLE 82

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + +   L  +   + +  +     L        LA       +    ++S    GL+ 
Sbjct: 83  APAGEDPGLRPTASTDSAPGETGRPVLGLPQGADRLAAADPLPERRETAEVSPESFGLLD 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267
             +   V                     F   S++   +   +L ++  V+  S   +  
Sbjct: 143 PALQVNVRIH------------------FSFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDA         N +LSL RA    + L    G++ +R+  + G     L    DP
Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLADKKDP 240

Query: 327 MNSANRRID 335
            +  NRR++
Sbjct: 241 RSGENRRVE 249


>gi|85715944|ref|ZP_01046921.1| hypothetical protein NB311A_14045 [Nitrobacter sp. Nb-311A]
 gi|85697142|gb|EAQ35023.1| hypothetical protein NB311A_14045 [Nitrobacter sp. Nb-311A]
          Length = 314

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  PE+   L +I ++L+      + I GHTD+         N  LS  RA + 
Sbjct: 212 FDTDKAVIKPESRPTLDQIAKLLSGQPGFNVYIVGHTDSQ---GTPAHNLELSRRRAEAV 268

Query: 296 YQVLMK-SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337
            + L++   +++ R+ +   GF        +D   + NRR++++
Sbjct: 269 AEDLVRTYKIAKARLNTAGVGFLAPVGSNGTDAGRALNRRVELV 312


>gi|126463889|ref|YP_001045002.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105700|gb|ABN78230.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 453

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277
              + I  +   +  +F  + +   P+   ++  +  VLA        + + GHTD  P 
Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
              N    N  LS  RA +   +L++ GV    I    G A       +      + NRR
Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444

Query: 334 IDILVEDR 341
           ++I +E R
Sbjct: 445 VEIRIEKR 452


>gi|332978756|gb|EGK15448.1| outer membrane porin OprF [Psychrobacter sp. 1501(2011)]
          Length = 304

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 102/262 (38%), Gaps = 19/262 (7%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           PE +++      +DE  ++  V++ I    Q   +      ++      +  +  + L  
Sbjct: 52  PEGTTRLVFYRPMDEDDSRTGVNIAINDDYQVSLHPGSFTTVYSCIGDNRLSNRSSELNT 111

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA- 208
           +    K    +   +++   E N     ++K K ++  + +         S  +S ++  
Sbjct: 112 NDLLLKHKTSTLKDQETQYYEINVNKNRVAKSKRVSEDQARAAMAGMTYQSHQISKVIPN 171

Query: 209 -----DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
                    + +        + I++       +FD   S+  P+ +  L    E +   +
Sbjct: 172 CAPRPQPKPQPISVPVLEEKVTINL-----QVLFDNDKSVVKPQYLRDLSTAAEFMQKYS 226

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321
           +  + I GHTD++   + A  N  LS  RA++  +V + + G+S  RI  + G+   R  
Sbjct: 227 DTTVVIEGHTDSN--ASDAY-NIALSKRRAHAVKEVFVNQYGISPARIQAV-GYGESRPI 282

Query: 322 IASDPMNSA--NRRIDILVEDR 341
            ++        NRR+  +++ +
Sbjct: 283 ASNATAEGRQMNRRVVAVIQQK 304


>gi|183222805|ref|YP_001840801.1| hypothetical protein LEPBI_I3466 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167781227|gb|ABZ99525.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 461

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + +     +     E T+    IS+    ++  F+++SS+   E+ + L  I + L  ++
Sbjct: 332 ASVPKQENLVQKKLEETK---KISL----DSVYFERASSVLKSESSIPLDSIVDYLHENS 384

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + I GHTD         DN  LS +RA S  Q L+  GV  +R+    G    +  +
Sbjct: 385 DQKMKIIGHTD---LTGTYDDNMVLSKERAESVKQYLVSKGVDPNRLV-TEGKGPTQPMV 440

Query: 323 --ASDPMNSANRRIDILVED 340
               +  +  NRR + ++ +
Sbjct: 441 QGTDEASSKKNRRTEFVLLN 460


>gi|189912837|ref|YP_001964392.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777513|gb|ABZ95814.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 423

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + +     +     E T+    IS+    ++  F+++SS+   E+ + L  I + L  ++
Sbjct: 294 ASVPKQENLVQKKLEETK---KISL----DSVYFERASSVLKSESSIPLDSIVDYLHENS 346

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  + I GHTD         DN  LS +RA S  Q L+  GV  +R+    G    +  +
Sbjct: 347 DQKMKIIGHTD---LTGTYDDNMVLSKERAESVKQYLVSKGVDPNRLV-TEGKGPTQPMV 402

Query: 323 --ASDPMNSANRRIDILVED 340
               +  +  NRR + ++ +
Sbjct: 403 QGTDEASSKKNRRTEFVLLN 422


>gi|183222022|ref|YP_001840018.1| hypothetical protein LEPBI_I2664 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912089|ref|YP_001963644.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167776765|gb|ABZ95066.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780444|gb|ABZ98742.1| Putative outer membrane protein; putative signal peptide
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 618

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            N   F   SS    E+   L ++  +L  +T   + I GHTD    ++    N +LSL+
Sbjct: 509 MNNLFFAFRSSEFAKESEPELDRLAGILKKTTNLKVLIEGHTDNVGTKSA---NQKLSLE 565

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           RA S    L      ED    + G         +  +   + NRR+   + +
Sbjct: 566 RANSVAFYLKSKHKIEDSRISVVGLGPSNPIAENGSEEGRAVNRRVVFKILE 617


>gi|77465494|ref|YP_354997.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389912|gb|ABA81096.1| OmpA/MotB domain protein [Rhodobacter sphaeroides 2.4.1]
          Length = 254

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 24/249 (9%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P    ++   D  +     +         +   +        +  +  +       +SL 
Sbjct: 23  PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAMADVPDSLG 82

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + +   L  +   + +  +     L        LA            ++S    GL+ 
Sbjct: 83  APAGEDPGLRPTASTDSAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVSPESFGLLD 142

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267
             +   V                     F   S++   +   +L ++  V+  S   +  
Sbjct: 143 PALQVNVRIH------------------FAFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           I GHTDA         N +LSL RA    + L    G++ +R+  + G     L    DP
Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLADKKDP 240

Query: 327 MNSANRRID 335
            +  NRR++
Sbjct: 241 RSGENRRVE 249


>gi|167561951|ref|ZP_02354867.1| ompA family protein [Burkholderia oklahomensis EO147]
 gi|167569201|ref|ZP_02362075.1| ompA family protein [Burkholderia oklahomensis C6786]
          Length = 215

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAVTPAFTPLLNDLASTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              + + GV+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNAMSQRGVAASRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213


>gi|70734242|ref|YP_257882.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68348541|gb|AAY96147.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 164

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   FE T  G            +F          +  ++Q+IG+ L     + + + 
Sbjct: 38  VLKQEGFELTDEGWA---FGLSGKVLFGSDVETLNQASTEIVQRIGKALLSVDIQKVRVD 94

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           GHTDA         N +LS+ RA S  +VL + G+ E+ I ++ G        ++  +  
Sbjct: 95  GHTDA---SGKEAYNVQLSVRRAKSVVKVLTQVGMREENI-QLRGLGSSEPVASNSTVAG 150

Query: 330 A--NRRIDILV 338
              NRR+ I+V
Sbjct: 151 RTENRRVSIVV 161


>gi|84515980|ref|ZP_01003341.1| OmpA family protein [Loktanella vestfoldensis SKA53]
 gi|84510422|gb|EAQ06878.1| OmpA family protein [Loktanella vestfoldensis SKA53]
          Length = 218

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 18/210 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                QS++ +      +  G         + ++       L   +    +       L 
Sbjct: 23  PGAPNQSQNTRQGAMIGALGGAAAGALIGNDGTVRDRNRAALIGAALGAGVGGGIGNSLD 82

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
             A+++   L           V      T +++ +       +F  +S+    ++   L 
Sbjct: 83  RQAEELRRALRN--------DVGVSNNGTNLVVVLSQD---LLFATNSTQIGAQSQNDLM 131

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +   L +  +  I++ GHTD       A  N  LS  RA S   VL   GVS  R+  I
Sbjct: 132 IVARSLTNYPDSTINVIGHTDNV---GSASFNQDLSERRAQSVAGVLRSGGVSPGRVRSI 188

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVED 340
            G   ++   ++        NRR++I++  
Sbjct: 189 -GAGLYQPIASNATAEGRQLNRRVEIIITP 217


>gi|256422985|ref|YP_003123638.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256037893|gb|ACU61437.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 1026

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F  + +     ++  L K+  +L AH    + + GHTD          N  LS  R+ + 
Sbjct: 920  FASAKAEIAVSSLPSLDKMAALLQAHREWQLLLSGHTDNE---GTETFNQTLSEKRSEAV 976

Query: 296  YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             Q L+  GV  +RI+   G+   +     +S+     NRR+++ +
Sbjct: 977  RQYLVTKGVDAERIT-TKGYGQSKPLTTNSSEAGRGKNRRVEMEI 1020


>gi|167722027|ref|ZP_02405263.1| OmpA family membrane protein [Burkholderia pseudomallei DM98]
          Length = 531

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518


>gi|163856192|ref|YP_001630490.1| outer membrane protein A precursor [Bordetella petrii DSM 12804]
 gi|163259920|emb|CAP42221.1| outer membrane protein A precursor [Bordetella petrii]
          Length = 193

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+       + N  LS  RA S
Sbjct: 87  FFDFDKSTLKPEGRQLLDQVAQQAQGIDLETIIAVGHTDSI---GTEKYNQGLSERRAAS 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  GV  +RI    G    +   ++      + NRR++I +V  R+
Sbjct: 144 VKSYLVSKGVDPNRIY-TEGKGELQPVASNKTREGRAQNRRVEIEVVGSRR 193


>gi|315918088|ref|ZP_07914328.1| outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058194|ref|ZP_07922679.1| outer membrane porin F [Fusobacterium sp. 3_1_5R]
 gi|313683870|gb|EFS20705.1| outer membrane porin F [Fusobacterium sp. 3_1_5R]
 gi|313691963|gb|EFS28798.1| outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563]
          Length = 189

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSI 243
           ++DL+ + +   +    D   K +  +    + G+ I       I+      +FD +   
Sbjct: 33  IRDLSTEGNQNFAIEDIDAAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFNKYE 92

Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
                   L+ +   L A++   I I G+TD   F      N  LS++RA +    L+  
Sbjct: 93  VKNGIKPSLRTLANALGANADIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVAQ 149

Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           G  E+ I  I G+       ++D     + NRR++ ++
Sbjct: 150 GAIENNI-SIEGYGKQNPVASNDTESGRARNRRVEFII 186


>gi|293604168|ref|ZP_06686576.1| outer membrane protein A [Achromobacter piechaudii ATCC 43553]
 gi|292817393|gb|EFF76466.1| outer membrane protein A [Achromobacter piechaudii ATCC 43553]
          Length = 193

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+      A  N +LS  RA S
Sbjct: 87  FFDFDKSTLKPEGRQLLDQVAQQARGIELETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G        ++      + NRR++I +V  R+
Sbjct: 144 VKTYLVSKGIDPNRIY-TEGKGELNPIASNKTKEGRAQNRRVEIEIVGSRK 193


>gi|170691850|ref|ZP_02883014.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170143134|gb|EDT11298.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 168

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N   G+       G+ + +       +FD   S    +   V+ +   +L  S + I + 
Sbjct: 33  NRAAGIEVAPVADGVAVKL---PEKALFDFDKSAVRADASAVVDRSAVLLKRSKKPIIVE 89

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           G+TD          N +LS  RA +    L+  GV  +R+ +  G A++    ++D    
Sbjct: 90  GYTDNV---GTLEYNQQLSEARAVAVGYALVGRGVPMERV-RTKGNAYNNPIASNDTPEG 145

Query: 328 NSANRRIDILV 338
            + NRR +I+V
Sbjct: 146 RALNRRTEIVV 156


>gi|319795926|ref|YP_004157566.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315598389|gb|ADU39455.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 207

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           QR T  F+   +   P +  ++ + +   LA S   I + GHTD    +     N +LS 
Sbjct: 100 QRYTVFFEVGGTTLTPASQQIMTEALAAALARSGGDIVVTGHTDT---KGNGESNDQLSR 156

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            RA    Q+ ++     +R+  + G     L + +        NRR+ I V
Sbjct: 157 RRAQEVVQLFVEQRFPANRVEAV-GRGERDLAVPTADEVDEPRNRRVTIEV 206


>gi|167826566|ref|ZP_02458037.1| OmpA family membrane protein [Burkholderia pseudomallei 9]
          Length = 531

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518


>gi|91228645|ref|ZP_01262561.1| putative outer membrane protein [Vibrio alginolyticus 12G01]
 gi|91187796|gb|EAS74112.1| putative outer membrane protein [Vibrio alginolyticus 12G01]
          Length = 204

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            + +   +F   S +  P     + ++ + L       I I+G+   +     A  N  L
Sbjct: 76  QEMQIRVLFANDSDVINPIFTQQILELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 132

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           S  RA +  + LMK+G+S DR++ I G+    L         ++ NRR+   V   +G
Sbjct: 133 SKRRAENVRKELMKNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 189


>gi|256823021|ref|YP_003146984.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256796560|gb|ACV27216.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069]
          Length = 330

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +    E+   L +I ++L  + +  + + GH+D          N  LS  RA S 
Sbjct: 228 FDTNKASIKAESKPTLDEIAKLLKDNPDLKLLVVGHSDNQ---GDFDYNIDLSKRRAESV 284

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337
            Q L+   GV+  R+     G+A       ++   + NRR++++
Sbjct: 285 KQALVSDYGVNAARLKPWGVGYAAPVASNKAEQGRAKNRRVELV 328


>gi|87122282|ref|ZP_01078164.1| OmpA family protein [Marinomonas sp. MED121]
 gi|86162425|gb|EAQ63708.1| OmpA family protein [Marinomonas sp. MED121]
          Length = 204

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD       P     L+++   L  +    + I GHTD          N  LS  RA
Sbjct: 73  KVLFDTGKHEVKPAFYSELRELASFLKKNPASSVIIEGHTDNV---GSKTSNQTLSFQRA 129

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +   V+     ++ +R+ +  GF       +++      ANRR+   V  RQ
Sbjct: 130 SAIAAVITDKFKIAPNRV-QAKGFGETSPIASNETHSGREANRRVVAEVFSRQ 181


>gi|260432355|ref|ZP_05786326.1| inner membrane lipoprotein YiaD [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416183|gb|EEX09442.1| inner membrane lipoprotein YiaD [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 223

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 17/203 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           +    +  + +  G  +        + +      L   +           +L   A ++ 
Sbjct: 31  DDPNQNAKQGAILGGLIGAGVGAIANDSDPGLGALAGAAIGAAGGGLIGNQLDRQAAELR 90

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L+         G+        +++++    N   FD  S+   P     L ++G+ L 
Sbjct: 91  QQLAN-------DGITIVNAGDRLIVTV---PNDITFDTDSATVRPALRADLVRVGQNLV 140

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +  +  + I GHTD+      A  N  LS  RA +   +L  +GVS  RI+ I G   ++
Sbjct: 141 NYPKSNVQIIGHTDSD---GDAGYNQALSERRASAVADILHANGVSYARITTI-GRGENQ 196

Query: 320 LKIAS--DPMNSANRRIDILVED 340
              ++      + NRR++I++  
Sbjct: 197 PIASNLTPEGKAQNRRVEIVIVP 219


>gi|313675999|ref|YP_004053995.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312942697|gb|ADR21887.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 671

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F   S   L  +   L ++ EV+  +++  + I GHTD++        N  LS  R
Sbjct: 565 NNVFFAFDSHELLGSSKSELNRMVEVMNDNSQIEVVIIGHTDST---GPEEYNQVLSEKR 621

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A S    L ++G+ E+R+    G   +     +D     + NRR++  VE 
Sbjct: 622 AQSVVNYLTQNGIDEERLE-YLGKGENEPAYPNDTRENRAKNRRVNFKVER 671


>gi|281425749|ref|ZP_06256662.1| lipoprotein PG3 [Prevotella oris F0302]
 gi|281400157|gb|EFB30988.1| lipoprotein PG3 [Prevotella oris F0302]
          Length = 225

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           A  I    + E T   G+    +   +  +F  + +     +   L K  +VL  +++  
Sbjct: 77  AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTSSSKNDLAKFSKVLKDNSDCH 136

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GHTD +    I   N  LS  RA S    L + GVS  +   + G         + 
Sbjct: 137 VDIYGHTDTTGNDGI---NIPLSNRRAESVVNYLKQCGVSGSQFKNVVGKGSAEPVADNS 193

Query: 326 PMNSA--NRRIDILVEDRQG 343
                  NRR+++ +   Q 
Sbjct: 194 TAAGRKQNRRVEVYLYASQA 213


>gi|255535532|ref|YP_003095903.1| membrane-bound proton-translocating pyrophosphatase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341728|gb|ACU07841.1| Pyrophosphate-energized proton pump [Flavobacteriaceae bacterium
           3519-10]
          Length = 912

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     L  + E++       I + G+TD +     A  N +LS  RA + 
Sbjct: 808 FQSGSSDLKPGAENALANLAEIMNDHPNVRIKLGGYTDDT---GNADTNLKLSNLRAQTT 864

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSANRRIDILVED 340
              L++ G++ DRI    G+           +D   + NRRID+ V  
Sbjct: 865 KLKLLEMGIAADRIE-TEGYGPLFPVCEANDTDECKAQNRRIDVRVLS 911


>gi|83949579|ref|ZP_00958312.1| OmpA family protein [Roseovarius nubinhibens ISM]
 gi|83837478|gb|EAP76774.1| OmpA family protein [Roseovarius nubinhibens ISM]
          Length = 171

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+   P     LQ+        + +I   GHTD+   R     N  LSL RA S 
Sbjct: 73  LFATDSANISPSGRARLQQFFRDANAVSYII--TGHTDS---RASDAYNMNLSLRRANSV 127

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +V +++G    RI+ + G+     K ++       ANRR++I+
Sbjct: 128 ARVAVQTG---ARIADVRGYGERMPKASNATAAGMQANRRVEII 168


>gi|167921266|ref|ZP_02508357.1| OmpA family protein [Burkholderia pseudomallei BCC215]
          Length = 524

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 406 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 462

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 463 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 511


>gi|148555237|ref|YP_001262819.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148500427|gb|ABQ68681.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 222

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S    P+    L K+   L+   +  + + GHTD++        N  LS +RA + 
Sbjct: 114 FATNSYEVQPQFRTTLDKVASTLSEYGKTYVDVYGHTDST---GSDAINEPLSRNRAEAV 170

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
              L   GV+  RI    GF   +   ++       ANRR++I +   +
Sbjct: 171 ANYLSGHGVAAARIG-TQGFGSRQPVASNATPDGRQANRRVEIKIVPIK 218


>gi|119776228|ref|YP_928968.1| OmpA family protein [Shewanella amazonensis SB2B]
 gi|119768728|gb|ABM01299.1| OmpA family protein [Shewanella amazonensis SB2B]
          Length = 222

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I I++  N   F    +   P  + VL  +  V    ++  +++ G+TD+ 
Sbjct: 99  VSVTRNGDNI-ILNMPNDVTFAVDKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDS- 156

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRI 334
                   N RLS  RA      L+  GV+  R+S +  G A      A+    + NRR+
Sbjct: 157 --SGADSYNLRLSQVRASEVGNYLLSKGVAAARVSTQGMGEASPIASNATAEGRAQNRRV 214

Query: 335 DILVED 340
           +I++  
Sbjct: 215 EIILTP 220


>gi|15596974|ref|NP_250468.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa PAO1]
 gi|116049726|ref|YP_791468.1| major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985208|ref|YP_001348883.1| outer membrane protein OprF precursor [Pseudomonas aeruginosa PA7]
 gi|218892271|ref|YP_002441138.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa LESB58]
 gi|254234871|ref|ZP_04928194.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa C3719]
 gi|254240119|ref|ZP_04933441.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa 2192]
 gi|296389835|ref|ZP_06879310.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa PAb1]
 gi|313110468|ref|ZP_07796353.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa 39016]
 gi|130680|sp|P13794|PORF_PSEAE RecName: Full=Outer membrane porin F; Flags: Precursor
 gi|9947757|gb|AAG05166.1|AE004603_6 Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa PAO1]
 gi|151508|gb|AAA25973.1| porin protein F precursor [Pseudomonas aeruginosa]
 gi|4186419|gb|AAD11568.1| major outer membrane protein OprF precursor [Pseudomonas aeruginosa
           PAO1]
 gi|115584947|gb|ABJ10962.1| major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166802|gb|EAZ52313.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa C3719]
 gi|126193497|gb|EAZ57560.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa 2192]
 gi|150960366|gb|ABR82391.1| outer membrane protein OprF precursor [Pseudomonas aeruginosa PA7]
 gi|218772497|emb|CAW28279.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa LESB58]
 gi|310882855|gb|EFQ41449.1| Major porin and structural outer membrane porin OprF precursor
           [Pseudomonas aeruginosa 39016]
          Length = 350

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S     +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 244 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 300

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV   R++ + G+   R     A+    + NRR++
Sbjct: 301 RDVLVNEYGVEGGRVNAV-GYGESRPVADNATAEGRAINRRVE 342


>gi|330958963|gb|EGH59223.1| OprF [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 344

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFNKSVVKPNSYGDIKNLADFMQQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGAGRVNSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|239820234|ref|YP_002947419.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239805087|gb|ACS22153.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 276

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  LPE    L  +   +  +   I + G+TD          N  LSL RA + 
Sbjct: 167 FDGRSLADLLPEGRRKLDALAGDIKAAD-AIKVTGYTDRL---GSQAYNSALSLARANTV 222

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRIDILV 338
              L+++GV   +I ++ G      K+  +    +A       NRR++I V
Sbjct: 223 RDYLVQAGVPAQKI-QVQGKGESEPKVQCTQTARAALIDCLAPNRRVEIEV 272


>gi|330943087|gb|EGH45518.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 344

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|325297323|ref|YP_004257240.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324316876|gb|ADY34767.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 398

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   S    E+   L KI  ++ ++   + +RGHTD       A  N  LS  RA + Y
Sbjct: 297 FEFDKSTIKKESYPYLDKIVRLMKNTPIHVVVRGHTDNV---GDADYNMELSKKRAEAVY 353

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             L+K+GV    +     +   R    +D       NRR++  + +
Sbjct: 354 NYLLKAGVEPSHL-SYEYYGMTRPISTNDTPEGRLMNRRVEFEITE 398


>gi|323720608|gb|EGB29686.1| outer membrane protein A ompA [Mycobacterium tuberculosis CDC1551A]
          Length = 291

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 190 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 246

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 247 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 290


>gi|167839008|ref|ZP_02465785.1| hypothetical protein Bpse38_20639 [Burkholderia thailandensis
           MSMB43]
          Length = 560

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +   P+ +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 373 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 432

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L  + +            R  + SG    +    +    +   NRR+D+L
Sbjct: 433 ADELRTTALPGGARAPENAVQRSIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 485


>gi|27365951|ref|NP_761479.1| outer membrane protein [Vibrio vulnificus CMCP6]
 gi|27362100|gb|AAO11006.1| Outer membrane protein [Vibrio vulnificus CMCP6]
          Length = 280

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++KRL  L +++   LS        D        +       I  ID +    F  +S+ 
Sbjct: 115 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 170

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L K   +L  H+   +++ GH DA+        N +L++DRA    + L   
Sbjct: 171 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 227

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           G+  +RI+  S           +       NRR+ I ++ 
Sbjct: 228 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 266


>gi|115526883|ref|YP_783794.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520830|gb|ABJ08814.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 465

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +    +++ +L ++ E  +  S+ VI I GHTD       A  N  LS  RA + 
Sbjct: 363 FESGKATIDGDSLGLLDRLIETAMRCSSAVIEIAGHTDGD---GEAAANKALSERRAQAV 419

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              ++K+G+  DR   + GF   +      +D   + NRRI+  V  
Sbjct: 420 VDYMVKAGLPADRFHPV-GFGSAQPVASNDNDEGKAQNRRIEFTVRP 465


>gi|107101208|ref|ZP_01365126.1| hypothetical protein PaerPA_01002240 [Pseudomonas aeruginosa PACS2]
          Length = 331

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S     +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 225 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 281

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL+ + GV   R++ + G+   R     A+    + NRR++
Sbjct: 282 RDVLVNEYGVEGGRVNAV-GYGESRPVADNATAEGRAINRRVE 323


>gi|221369488|ref|YP_002520584.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
 gi|221162540|gb|ACM03511.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 453

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277
              + I  +   +  +F  + +   P+   ++  +  VLA        + + GHTD  P 
Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
              N    N  LS  RA +   +L++ GV    I    G A       +      + NRR
Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444

Query: 334 IDILVEDR 341
           ++I +E R
Sbjct: 445 VEIRIEKR 452


>gi|217077698|ref|YP_002335416.1| motility protein B [Thermosipho africanus TCF52B]
 gi|217037553|gb|ACJ76075.1| motility protein B [Thermosipho africanus TCF52B]
          Length = 288

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265
           +++     V  E    G LI+I D     +F+  S+    E   +L+K+G V+  H+T V
Sbjct: 87  ISEEYKGKVTVEERDEGTLITISDLD---IFNPGSARLTAEAKKLLEKLGAVIIEHTTNV 143

Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVL 299
           + I G+ +  P    +I + NW LS  RA S     
Sbjct: 144 LEIYGYANEIPVPENSIYQSNWHLSSARASSVVYFF 179


>gi|162452025|ref|YP_001614392.1| hypothetical protein sce3752 [Sorangium cellulosum 'So ce 56']
 gi|161162607|emb|CAN93912.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 207

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+ +S   LPE+  VL  + E L    +V  + + GHTD+         N  LS  RA +
Sbjct: 81  FETNSDKLLPESDEVLNLVDEFLKQREDVSLLRVEGHTDSD---GEDAANQTLSEKRAMA 137

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
             + L+  G    R   + GF   +    ++     + NRR    +   +G
Sbjct: 138 VARWLVAKGNDCKRFIAV-GFGETKPVADNNTPEGKAQNRRTGFFIAAIKG 187


>gi|89092082|ref|ZP_01165037.1| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92]
 gi|89083817|gb|EAR63034.1| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92]
          Length = 218

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +    ++G      R G  I +I       F  +S    P    VL  + +VL    
Sbjct: 81  QEALLRQELEGTGVRVERIGDSIRLI-MPGNITFALNSDQIAPSFYSVLDSVAKVLVKFD 139

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321
           +  +++ G TD++        N +LS  RA      L+ SG+S  RI+   G+       
Sbjct: 140 QTELNVDGFTDST---GSFEYNQQLSERRAARVGDYLVSSGISRLRINA-KGYGERYPIA 195

Query: 322 -IASDPMNSANRRIDI 336
              +    + NRR++I
Sbjct: 196 DNKTAAGRAQNRRVEI 211


>gi|119468232|ref|ZP_01611358.1| putative outer membrane protein; signal peptide [Alteromonadales
           bacterium TW-7]
 gi|119448225|gb|EAW29489.1| putative outer membrane protein; signal peptide [Alteromonadales
           bacterium TW-7]
          Length = 351

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +      +  + ++   L    +  + + GHT A      A  N  LS  RA S 
Sbjct: 241 FPNDKAAVSQRYLDDIDQVASFLKDYPDTTVLLEGHTSAV---GKATYNKMLSKKRADSV 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
            + L+  G++ DRI+ + G    RLK  ++     + NRR++  ++  +
Sbjct: 298 AKQLIADGIASDRITTV-GLGEERLKNEANTAAAHAENRRVEAHIKTIK 345


>gi|118591925|ref|ZP_01549320.1| possible outer membrane protein OprF [Stappia aggregata IAM 12614]
 gi|118435568|gb|EAV42214.1| possible outer membrane protein OprF [Stappia aggregata IAM 12614]
          Length = 194

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+    + I+ LQ +G+ L           I GHTD    R  A  N  LS  RA+
Sbjct: 88  FEFDSASLTNDGILTLQALGQALQDPRLKNMRFQIAGHTD---LRGTADYNLDLSKRRAF 144

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              + L              G+   R     +P +  NRR++I+
Sbjct: 145 MVAEFLAAFYTIPRGQLVPVGYGESRPVDPGNPSSGRNRRVEII 188


>gi|325105502|ref|YP_004275156.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974350|gb|ADY53334.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 442

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +SS+        L ++   L A  ++ I + GH  A         N +LS+DRA S 
Sbjct: 341 FEFNSSVLRTSAYPTLDRVSSSLRADKSKSIQLDGHASAE---GTEAYNMQLSIDRANSV 397

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L+ SGV   RI  + G+   R   ++        NRR++
Sbjct: 398 KTYLVNSGVDAKRI-AVKGYGESRPIASNATEEGRIKNRRVE 438


>gi|167905004|ref|ZP_02492209.1| OmpA family protein [Burkholderia pseudomallei NCTC 13177]
          Length = 524

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            +F    +   P      +   +  +LA+  + + I GH D+         N++LS  RA
Sbjct: 406 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 462

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            +     +  GV + R   + G         +D     + NRR+++L+  
Sbjct: 463 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSSSGRAQNRRVEVLLIP 511


>gi|313802740|gb|EFS43958.1| OmpA family protein [Propionibacterium acnes HL110PA2]
          Length = 368

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275
             T+  + I   D   + +FD  S +  P    ++ +  + L     +  I + G+TD+ 
Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332
                A  N  LS  RA S  +VL         I+ ++ G        ++D       NR
Sbjct: 304 --SGSASHNLDLSRRRAASGAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359

Query: 333 RIDILVED 340
           R+ I V++
Sbjct: 360 RVTITVKE 367


>gi|237803660|ref|ZP_04591245.1| OprF [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025642|gb|EGI05698.1| OprF [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 344

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFNKSVVKPNSYGDIKNLADFMQQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGAGRVNSV-GYGESRPVADNATEAGRAVNRRVE 336


>gi|121610060|ref|YP_997867.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121554700|gb|ABM58849.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 242

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+         N RLS+ RA +
Sbjct: 134 FFDFDKSVIKPEGKAKLDDLVSKVKDINLEVIIAVGHTDSV---GTDAYNQRLSVRRAEA 190

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
               L+  G+ ++R+    G    +    +      + NRR++I V   + 
Sbjct: 191 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTSEGRAKNRRVEIEVVGTRA 240


>gi|308376544|ref|ZP_07439229.2| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008]
 gi|308350673|gb|EFP39524.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008]
          Length = 320

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 219 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 275

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 276 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 319


>gi|327404809|ref|YP_004345647.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320317|gb|AEA44809.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 454

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +S    PE+  VL++I   L+ +    + I GHTD+         N  LS  RA +
Sbjct: 351 LFASNSDQLKPESYGVLKEIATALSENPAVRVKIVGHTDS---DGEESFNAELSKKRALA 407

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             Q L+    +   R+    G   +    ++      + NRR++ L
Sbjct: 408 VKQALISEFKIEASRME-TDGKGENEPTDSNATSVGKANNRRVEFL 452


>gi|320156464|ref|YP_004188843.1| outer membrane protein SypB [Vibrio vulnificus MO6-24/O]
 gi|319931776|gb|ADV86640.1| outer membrane protein SypB [Vibrio vulnificus MO6-24/O]
          Length = 280

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++KRL  L +++   LS        D        +       I  ID +    F  +S+ 
Sbjct: 115 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 170

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L K   +L  H+   +++ GH DA+        N +L++DRA    + L   
Sbjct: 171 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 227

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           G+  +RI+  S           +       NRR+ I ++ 
Sbjct: 228 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 266


>gi|256422968|ref|YP_003123621.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256037876|gb|ACU61420.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 499

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS         L   I  +    +  + + GHTD +     A +N  LS+ RA +
Sbjct: 393 LFKFNSSELNKNLYSSLDSLIKRIPRDGSIQLQVNGHTDNA--GTSAYNN-SLSMKRANA 449

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
               + + G+  D I  I+G    +    +        NRR++I++
Sbjct: 450 VAGYMQEHGLGND-IRLITGVGESQPVADNQSAAGRRRNRRVEIII 494


>gi|325297821|ref|YP_004257738.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317374|gb|ADY35265.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 239

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K+  +  + A +I       V DN     +  T  +GI           +F  SSS    
Sbjct: 74  KKMDKAAEQAAQIEGAEVEQVTDNNGLQAVKVTFDSGI-----------LFATSSSDLST 122

Query: 247 ETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVL 299
                L K    VL  + +  ++I G+TD + ++N   +     N  LS  RA S    L
Sbjct: 123 SAKSALSKFANNVLIQNPDMDVAIYGYTDNTGWKNSTAEQSVQKNLELSQSRAQSVSNYL 182

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            + G +  +I  + G          +++     NRR+++
Sbjct: 183 RECGTTTSQIKTVEGLGESNPVADNSTEAGRQENRRVEV 221


>gi|302185648|ref|ZP_07262321.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 344

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   +     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGETKPVADNATEAGRAVNRRVE 336


>gi|150005847|ref|YP_001300591.1| OmpA family outer membrane protein [Bacteroides vulgatus ATCC 8482]
 gi|149934271|gb|ABR40969.1| outer membrane protein, OmpA family [Bacteroides vulgatus ATCC
           8482]
          Length = 239

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           ++  K  K  ++ A+   + +  +  +N ++ V   T  +GI           +F+  ++
Sbjct: 71  LIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKV-TFDSGI-----------LFNTGNA 118

Query: 243 IPLPETIVVLQKIG-EVLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSA 295
               +    L K    VL  + +  +SI G+TD   +RN   +     N  LS +RA S 
Sbjct: 119 ALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSV 178

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L+  GVS  +I  + G         +D       NRR+++
Sbjct: 179 ASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEV 221


>gi|88810227|ref|ZP_01125484.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
 gi|88791857|gb|EAR22967.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
          Length = 263

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 84/216 (38%), Gaps = 13/216 (6%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL-SKEKILAMKRK 189
           +    +S Q+     +  ++  + + L  +      I + E      +   ++I+  +  
Sbjct: 54  LRRAQDSLQAAQTAWTEEQNQARAEHLAYTAQRHAEIAQAEAAKQAAIVQSQQIMKQRDT 113

Query: 190 KRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            RLQ  ++ + +    + V    +  +  + T  GI++++    +  +F   S+      
Sbjct: 114 LRLQSRSQLVETQQRQIEVLREQLAELKPKQTEQGIMLTL----SHVLFAFDSARLQSAA 169

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              L K+   L    +  + I G+TD++     A  N RLS  RA S    + + GV   
Sbjct: 170 QAPLDKLATYLRERPQIQVKIVGYTDST---GAANYNQRLSKRRAQSVADAMAQRGVERA 226

Query: 308 RISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
            + ++ G        ++        NRR++  + ++
Sbjct: 227 SM-RVVGRGESNPVASNATEQGRQLNRRVEFTLLNQ 261


>gi|319762553|ref|YP_004126490.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|317117114|gb|ADU99602.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
          Length = 240

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+      A  N +LS+ RA +
Sbjct: 133 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 189

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 190 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 234


>gi|327480088|gb|AEA83398.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri DSM
           4166]
          Length = 254

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 36/187 (19%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234
           M  +++L++   +    +  L     V+  + +       R GI + + +        N 
Sbjct: 44  MDIQQKLEERQVQFEQEIEELKKAEQVRRTILDEAVEALRRRGIKVEVSENHTVLSIPND 103

Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283
            + FD  +            +IG+V+               I I GHTD  P +  + + 
Sbjct: 104 LLGFDTGAYEIHSAYQARALEIGKVINEVISRDDRVEFLDTIFIEGHTDNRPLQGFMGKG 163

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIAS---DPMNS 329
           NW LS  RA S +Q    +   E+++S+           +SG+   R  +A    +    
Sbjct: 164 NWGLSTFRAISLWQFWGDALAREEQLSRLNNKDGKPLFSVSGYGETRPAVADQVTEEDFK 223

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 224 RNRRIDI 230


>gi|167618284|ref|ZP_02386915.1| ompA family protein [Burkholderia thailandensis Bt4]
          Length = 171

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 64  FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 120

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 121 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 169


>gi|299532464|ref|ZP_07045855.1| OmpA/MotB [Comamonas testosteroni S44]
 gi|298719549|gb|EFI60515.1| OmpA/MotB [Comamonas testosteroni S44]
          Length = 214

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  P     L  +   +      + I  GHTD+         N +LS+ RA +
Sbjct: 106 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDSV---GSDAYNQKLSVRRAEA 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
               L+  G+ + R+    G    +      +    + NRR++I V   + 
Sbjct: 163 VKAYLVSKGIEKSRVY-TEGKGEKQPVADNKTAAGRAQNRRVEIEVVGTKA 212


>gi|15608039|ref|NP_215414.1| outer membrane protein A OMPA [Mycobacterium tuberculosis H37Rv]
 gi|15840318|ref|NP_335355.1| OmpA family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792087|ref|NP_854580.1| outer membrane protein A OMPA [Mycobacterium bovis AF2122/97]
 gi|121636822|ref|YP_977045.1| putative outer membrane protein A ompA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660677|ref|YP_001282200.1| outer membrane protein A [Mycobacterium tuberculosis H37Ra]
 gi|148822109|ref|YP_001286863.1| outer membrane protein A ompA [Mycobacterium tuberculosis F11]
 gi|167967701|ref|ZP_02549978.1| outer membrane protein A ompA [Mycobacterium tuberculosis H37Ra]
 gi|215402698|ref|ZP_03414879.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987]
 gi|215426166|ref|ZP_03424085.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92]
 gi|215429757|ref|ZP_03427676.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054]
 gi|215445042|ref|ZP_03431794.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85]
 gi|219556764|ref|ZP_03535840.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17]
 gi|224989293|ref|YP_002643980.1| putative outer membrane protein A [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800076|ref|YP_003033077.1| hypothetical protein TBMG_03089 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231205|ref|ZP_04924532.1| outer membrane protein A ompA [Mycobacterium tuberculosis C]
 gi|254363830|ref|ZP_04979876.1| outer membrane protein A ompA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549877|ref|ZP_05140324.1| hypothetical protein Mtube_05346 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185796|ref|ZP_05763270.1| hypothetical protein MtubCP_07170 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260199919|ref|ZP_05767410.1| hypothetical protein MtubT4_07255 [Mycobacterium tuberculosis T46]
 gi|260204103|ref|ZP_05771594.1| hypothetical protein MtubK8_07315 [Mycobacterium tuberculosis K85]
 gi|289442311|ref|ZP_06432055.1| outer membrane protein A ompA [Mycobacterium tuberculosis T46]
 gi|289446466|ref|ZP_06436210.1| outer membrane protein A ompA [Mycobacterium tuberculosis CPHL_A]
 gi|289555318|ref|ZP_06444528.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 605]
 gi|289568867|ref|ZP_06449094.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17]
 gi|289573527|ref|ZP_06453754.1| outer membrane protein A ompA [Mycobacterium tuberculosis K85]
 gi|289744630|ref|ZP_06504008.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987]
 gi|289749421|ref|ZP_06508799.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92]
 gi|289752954|ref|ZP_06512332.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054]
 gi|289756985|ref|ZP_06516363.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85]
 gi|294996380|ref|ZP_06802071.1| hypothetical protein Mtub2_18234 [Mycobacterium tuberculosis 210]
 gi|297633418|ref|ZP_06951198.1| hypothetical protein MtubK4_04816 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730403|ref|ZP_06959521.1| hypothetical protein MtubKR_04896 [Mycobacterium tuberculosis KZN
           R506]
 gi|306775025|ref|ZP_07413362.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu001]
 gi|306782060|ref|ZP_07420397.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu002]
 gi|306783573|ref|ZP_07421895.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu003]
 gi|306787937|ref|ZP_07426259.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu004]
 gi|306792274|ref|ZP_07430576.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu005]
 gi|306796673|ref|ZP_07434975.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu006]
 gi|306806741|ref|ZP_07443409.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu007]
 gi|306966938|ref|ZP_07479599.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu009]
 gi|306971133|ref|ZP_07483794.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu010]
 gi|307078861|ref|ZP_07488031.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu011]
 gi|307083420|ref|ZP_07492533.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu012]
 gi|313657730|ref|ZP_07814610.1| hypothetical protein MtubKV_04886 [Mycobacterium tuberculosis KZN
           V2475]
 gi|54040011|sp|P65594|Y923_MYCBO RecName: Full=Uncharacterized protein Mb0923
 gi|54042590|sp|P65593|Y899_MYCTU RecName: Full=Uncharacterized protein Rv0899/MT0922
 gi|1314039|emb|CAA97374.1| OUTER MEMBRANE PROTEIN A OMPA [Mycobacterium tuberculosis H37Rv]
 gi|13880481|gb|AAK45169.1| OmpA family protein [Mycobacterium tuberculosis CDC1551]
 gi|31617675|emb|CAD93784.1| PROBABLE OUTER MEMBRANE PROTEIN A OMPA [Mycobacterium bovis
           AF2122/97]
 gi|114199356|gb|ABI54278.1| outer membrane protein A [Mycobacterium bovis]
 gi|121492469|emb|CAL70937.1| probable outer membrane protein A ompA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600264|gb|EAY59274.1| outer membrane protein A ompA [Mycobacterium tuberculosis C]
 gi|134149344|gb|EBA41389.1| outer membrane protein A ompA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504829|gb|ABQ72638.1| outer membrane protein A [Mycobacterium tuberculosis H37Ra]
 gi|148720636|gb|ABR05261.1| outer membrane protein A ompA [Mycobacterium tuberculosis F11]
 gi|224772406|dbj|BAH25212.1| putative outer membrane protein A [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321579|gb|ACT26182.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 1435]
 gi|289415230|gb|EFD12470.1| outer membrane protein A ompA [Mycobacterium tuberculosis T46]
 gi|289419424|gb|EFD16625.1| outer membrane protein A ompA [Mycobacterium tuberculosis CPHL_A]
 gi|289439950|gb|EFD22443.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 605]
 gi|289537958|gb|EFD42536.1| outer membrane protein A ompA [Mycobacterium tuberculosis K85]
 gi|289542621|gb|EFD46269.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17]
 gi|289685158|gb|EFD52646.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987]
 gi|289690008|gb|EFD57437.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92]
 gi|289693541|gb|EFD60970.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054]
 gi|289712549|gb|EFD76561.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85]
 gi|308216378|gb|EFO75777.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu001]
 gi|308325291|gb|EFP14142.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu002]
 gi|308331576|gb|EFP20427.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu003]
 gi|308335389|gb|EFP24240.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu004]
 gi|308339194|gb|EFP28045.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu005]
 gi|308342931|gb|EFP31782.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu006]
 gi|308346757|gb|EFP35608.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu007]
 gi|308355333|gb|EFP44184.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu009]
 gi|308359272|gb|EFP48123.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu010]
 gi|308363182|gb|EFP52033.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu011]
 gi|308366838|gb|EFP55689.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu012]
 gi|326904881|gb|EGE51814.1| outer membrane protein A ompA [Mycobacterium tuberculosis W-148]
 gi|328459815|gb|AEB05238.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 4207]
          Length = 326

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 225 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 281

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 282 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 325


>gi|77458004|ref|YP_347509.1| OmpF [Pseudomonas fluorescens Pf0-1]
 gi|77382007|gb|ABA73520.1| outer membrane fibronectin-binding protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 344

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL  + GV   R+  I G+   R      ++   + NRR++
Sbjct: 295 KQVLTNQYGVESSRVQSI-GYGESRPVADNKTEAGRAVNRRVE 336


>gi|332880160|ref|ZP_08447842.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681919|gb|EGJ54834.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 242

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271
            V   T   G+    +   +  +F+ SSS         L K    + +  +   ++I+G+
Sbjct: 93  QVESVTDANGLQAVKVTFDSGILFNTSSSALSSNATASLAKFASTVLNVNKDMDVAIKGY 152

Query: 272 TDASPFRNIA-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           TD   ++N       + N  LSL RA S    L + GVS  +I+ + G         +  
Sbjct: 153 TDNQGWKNSTAAQSVQKNMDLSLQRANSVSNYLKQCGVSPTQITSVEGLGEADPVADNST 212

Query: 327 MNSA--NRRIDILV 338
                 NRR+++ +
Sbjct: 213 AAGREQNRRVEVYL 226


>gi|326316785|ref|YP_004234457.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373621|gb|ADX45890.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 219

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   + +    + I  GHTD+      A  N +LS+ RA +
Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213


>gi|209168561|gb|ACI42276.1| putative outer membrane protein [Vibrio alginolyticus]
          Length = 213

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            + +   +F   S +  P     ++++ + L       I I+G+   +     A  N  L
Sbjct: 85  QEMQIRVLFANDSDVINPIFTQQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 141

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           S  RA +  + LM +G+S DR++ I G+    L         ++ NRR+   V   +G
Sbjct: 142 SKRRAENVRKELMTNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 198


>gi|120611935|ref|YP_971613.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120590399|gb|ABM33839.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 219

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   + +    + I  GHTD+      A  N +LS+ RA +
Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213


>gi|228471058|ref|ZP_04055893.1| OmpA family protein [Porphyromonas uenonis 60-3]
 gi|228307180|gb|EEK16217.1| OmpA family protein [Porphyromonas uenonis 60-3]
          Length = 348

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I    N   F +  +    E   VL  + +++  + +  + I GHT           N R
Sbjct: 241 IEKDFNAAKFVQGKADLTDEAKFVLHDLAKLMEANPDLKLKIEGHTSEE---GDEAFNQR 297

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           LS +RA  A   L+  G+S DR+ +  G         S+P    NRR + +V
Sbjct: 298 LSEERAQVAVDFLISQGISADRL-QAEGKGSSEPIDPSNPD--VNRRTEFIV 346


>gi|302381881|ref|YP_003817704.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192509|gb|ADL00081.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 224

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S   P    VL  +  VL      V+ I GHTD+         N  LS  RA S 
Sbjct: 119 FAVNQSNIEPRFDAVLSDVAGVLQEYDRSVVDIVGHTDS---SGGDAINQPLSERRALSV 175

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              L+  GV  +R+  ++G +      ++      + NRR++IL+  
Sbjct: 176 ADALIARGVIRERLF-VAGQSSRVPVASNATPEGRAQNRRVEILIRP 221


>gi|188579997|ref|YP_001923442.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179343495|gb|ACB78907.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 282

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           L     +   L +         + E     P  ++++        +   A  I  +L+  
Sbjct: 37  LALAPARANPLTEVPGTRPPAAEGEAGTEAPPPRDEVAERVEAGAVNPSANAIIRSLAPF 96

Query: 207 VADNIVKG---VLFETTRTG--ILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLA 260
              N  +    V       G  + +      + T  F   S+   PE  + L+ +G+ L 
Sbjct: 97  ADGNPGRPAAPVAVSPGDGGPSLRVDPARSVDLTVFFAYDSARLTPEARIQLEPLGQALQ 156

Query: 261 H---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFA 316
               +     I GHTDA         N RLSL RA +    L    G+   R+ +I G+ 
Sbjct: 157 SRELAGHGFLIAGHTDA---AGGLGYNRRLSLARARAVRAHLAETYGIDPHRL-RIHGWG 212

Query: 317 HHRLKIASDPMNSANRRIDILV 338
             R K  + P    NRR+++ +
Sbjct: 213 PGRPKDPARPFARINRRVEVSL 234


>gi|237706550|ref|ZP_04537031.1| OmpA family membrane protein [Escherichia sp. 3_2_53FAA]
 gi|226899590|gb|EEH85849.1| OmpA family membrane protein [Escherichia sp. 3_2_53FAA]
          Length = 146

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F     +    T V++  +  + A    +I + G+TDA+      + N +LSL RA +  
Sbjct: 35  FATGVRLKDGSTKVLVDALVNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVR 91

Query: 297 Q-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             +L  S +       + G    +    +D     + NRR++I +  R
Sbjct: 92  NWMLQTSDIPAT-CFAVQGLGESQPAATNDTPQGRAVNRRVEISLVPR 138


>gi|154250209|ref|YP_001411034.1| motility protein B [Fervidobacterium nodosum Rt17-B1]
 gi|154154145|gb|ABS61377.1| motility protein B [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265
           +++     +  E    G LI++    N  +F+ +S+    E   +++K+G V+  H++ +
Sbjct: 88  ISEEYKGKITIEDKDEGTLITLT---NFKIFEPASARLTAEAKEIIEKLGAVIIEHTSNI 144

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLM 300
           I +RG+ D  P    +I   NW LS  RA +    ++
Sbjct: 145 IEVRGYADDRPLTPDSIYPSNWHLSSARASTVVNFML 181


>gi|218893200|ref|YP_002442069.1| hypothetical protein PLES_44851 [Pseudomonas aeruginosa LESB58]
 gi|218773428|emb|CAW29240.1| hypothetical protein PLES_44851 [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270
           ++G   E  R G  I +I       F   S+   P     L  +       +   I I G
Sbjct: 97  MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD++      + N  LS  RA S    L   GV   R+    G    +   ++      
Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTALGVDGTRL-STRGMGPDQPIASNSTADGR 211

Query: 329 SANRRIDI 336
           + NRR+++
Sbjct: 212 AQNRRVEV 219


>gi|167893289|ref|ZP_02480691.1| ompA family protein [Burkholderia pseudomallei 7894]
          Length = 171

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 64  FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 120

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 121 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 169


>gi|167844755|ref|ZP_02470263.1| ompA family protein [Burkholderia pseudomallei B7210]
          Length = 163

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 56  FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 112

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L + GV+ +R+S   G          A++   + NRR++I +   Q 
Sbjct: 113 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 161


>gi|149916697|ref|ZP_01905199.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149822414|gb|EDM81803.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 520

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+ +S+     ++  VL    +VL    E  I + GHTD          N +LS DRA +
Sbjct: 403 FEYNSATIREGKSKEVLDAAIKVLEEYPEIRIKVVGHTDNQ---GTPEYNKKLSTDRADA 459

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
             Q L + G++EDRI    G         ++     + NRR +  +  +
Sbjct: 460 VKQYLAEGGIAEDRIE-TFGAGQSDPLTTNETEEGRAKNRRTEFEIIKK 507


>gi|91786415|ref|YP_547367.1| hypothetical protein Bpro_0505 [Polaromonas sp. JS666]
 gi|91695640|gb|ABE42469.1| OmpA/MotB [Polaromonas sp. JS666]
          Length = 220

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 16/160 (10%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           L  + +KR  +  ++I   L   +A  +  G     T     I I     + +F  +S  
Sbjct: 50  LEAEVQKRRVEEQRRI--ALEKALAIPLATG---RVTLNNGRIGIS---GSVLFPLNSDQ 101

Query: 244 PLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNI---ARDNWRLSLDRAYSAY 296
             P+  ++L+ +   L        E++ + G TD  P +       DN  LS  RA +  
Sbjct: 102 LRPDGRLLLKSLVPPLQVYLGERDELLMVSGFTDDKPIQEGNQRFADNLALSAQRALTVT 161

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335
           + L++ G+   R    +  A   +   +D    + NRR++
Sbjct: 162 RALIEEGMPSSRAFAAAFGAEQPVASNTDEKGRALNRRVE 201


>gi|70671520|gb|AAZ06132.1| outer membrane protein A [Acinetobacter sp. V-26]
          Length = 349

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S   P+    + K+ E LA        I GHTD +  R +   N RLSL RA
Sbjct: 233 RVFFDTNKSDIKPQYKSEIAKVAEKLAEYPNATARIEGHTDNTGPRAL---NERLSLARA 289

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         +LV+  
Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFAAISGSRTVLVQPG 348

Query: 342 Q 342
           Q
Sbjct: 349 Q 349


>gi|154490195|ref|ZP_02030456.1| hypothetical protein PARMER_00427 [Parabacteroides merdae ATCC
           43184]
 gi|154089087|gb|EDN88131.1| hypothetical protein PARMER_00427 [Parabacteroides merdae ATCC
           43184]
          Length = 214

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++    K++ +TL        +           + ++     +  +F  +SS     + 
Sbjct: 59  KKMDKQKKELEATLPEETTVETINN------GEALKVTF---DSGILFATNSSTVSAASK 109

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED 307
             L+ +   L  + +  I I GHTD +        N  LS  RA S +  L    GVS  
Sbjct: 110 SALRDLAASLNANPDTDIKIIGHTDNT---GKVDYNQTLSEKRAKSVFDYLMEDQGVSSK 166

Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           R++   G   H     +      + NRR++IL+  
Sbjct: 167 RMT-YEGKGVHEPVADNSTPEGRALNRRVEILILP 200


>gi|226940371|ref|YP_002795445.1| Outer membrane protein A [Laribacter hongkongensis HLHK9]
 gi|226715298|gb|ACO74436.1| Outer membrane protein A [Laribacter hongkongensis HLHK9]
          Length = 226

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            S        L       +      + +   A+     L+  + D           +   
Sbjct: 53  SSKKDRSKGALIGAIGGGLAGAGIGQYMDRQARDFQRQLATQIRDG-----QIFVVKRAD 107

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
              ++   +   FD +S+   P  +  +  I  ++    +  + I GHTD++      R 
Sbjct: 108 NSILVTMTSQTAFDTNSASLKPGFMPTINTISRIVNQYGKTTLDITGHTDST---GNDRI 164

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           N  LS +RA +    L+   V   R+S   G    + +   AS+     NRR++IL+E 
Sbjct: 165 NVPLSQNRAAAVQNALLSRNVHPQRLSA-YGMGASQPRASNASEAGRQLNRRVEILIEP 222


>gi|212693137|ref|ZP_03301265.1| hypothetical protein BACDOR_02644 [Bacteroides dorei DSM 17855]
 gi|237709882|ref|ZP_04540363.1| outer membrane protein [Bacteroides sp. 9_1_42FAA]
 gi|237725448|ref|ZP_04555929.1| outer membrane protein [Bacteroides sp. D4]
 gi|254881970|ref|ZP_05254680.1| outer membrane protein [Bacteroides sp. 4_3_47FAA]
 gi|265753535|ref|ZP_06088890.1| outer membrane protein [Bacteroides sp. 3_1_33FAA]
 gi|294776453|ref|ZP_06741929.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|319641023|ref|ZP_07995729.1| OmpA family Outer membrane protein [Bacteroides sp. 3_1_40A]
 gi|212664242|gb|EEB24814.1| hypothetical protein BACDOR_02644 [Bacteroides dorei DSM 17855]
 gi|229436135|gb|EEO46212.1| outer membrane protein [Bacteroides dorei 5_1_36/D4]
 gi|229455975|gb|EEO61696.1| outer membrane protein [Bacteroides sp. 9_1_42FAA]
 gi|254834763|gb|EET15072.1| outer membrane protein [Bacteroides sp. 4_3_47FAA]
 gi|263235249|gb|EEZ20773.1| outer membrane protein [Bacteroides sp. 3_1_33FAA]
 gi|294449696|gb|EFG18220.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|317387353|gb|EFV68226.1| OmpA family Outer membrane protein [Bacteroides sp. 3_1_40A]
          Length = 243

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
           ++  K  K  ++ A+   + +  +  +N ++ V   T  +GI           +F+  ++
Sbjct: 75  LIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKV-TFDSGI-----------LFNTGNA 122

Query: 243 IPLPETIVVLQKIG-EVLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSA 295
               +    L K    VL  + +  +SI G+TD   +RN   +     N  LS +RA S 
Sbjct: 123 ALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSV 182

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L+  GVS  +I  + G         +D       NRR+++
Sbjct: 183 ASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEV 225


>gi|189475078|gb|ACE00213.1| OmpA [Vibrio alginolyticus]
          Length = 320

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  FD +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L++ G+   RI +  G   +    ++D       NRR++++V
Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEVVV 311


>gi|50083884|ref|YP_045394.1| putative lipoprotein [Acinetobacter sp. ADP1]
 gi|49529860|emb|CAG67572.1| putative lipoprotein precursor [Acinetobacter sp. ADP1]
          Length = 159

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268
            +++   F  T  G  + +       +F+   S   P     + ++   L       + +
Sbjct: 33  KMLQKEGFVQTDEGWTLGL---PERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKV 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            G+TD     N    N +LS  RA S   + + +  + + I +I G   ++  + +  + 
Sbjct: 90  VGYTDN--IGNRDY-NLKLSQARAQSVAAIFINNSFTPNHI-QIIGRGSNQPLLPNTTEE 145

Query: 327 MNSANRRIDILVED 340
             +ANRR+ I++  
Sbjct: 146 NRAANRRVAIVIVP 159


>gi|325068016|ref|ZP_08126689.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 553

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         L  +   L        +++ GHTD    ++ A  N  LS  RA +
Sbjct: 262 FASDSADLASGAEAQLNTVASQLKQHPDGGTLTVVGHTDD--VQDDAY-NQTLSEKRANA 318

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               L +    +   + +SG      KI    D   +ANRR++I
Sbjct: 319 VKTRLEQLTSLDKWQTSVSGKGESEPKIKDTSDEARAANRRVEI 362


>gi|253991307|ref|YP_003042663.1| hypothetical protein PAU_03834 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782757|emb|CAQ85922.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 577

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   S        V++  + ++ A    +I I GHTD++        N  LSL RA 
Sbjct: 440 SLFDVGQSRLKAGSAKVLMNALIDIKAKPGWLIVISGHTDST---GNTEKNRVLSLARAE 496

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +    L+++         + G    R     ++    +ANRR++I
Sbjct: 497 AVRDWLLQTSDIPLACFAVQGEGATRPVATNSTAAGRAANRRVEI 541


>gi|219684554|ref|ZP_03539497.1| outer membrane protein [Borrelia garinii PBr]
 gi|219671916|gb|EED28970.1| outer membrane protein [Borrelia garinii PBr]
          Length = 389

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K ++ E    GI +S+ D      F   S   L +    L  I ++
Sbjct: 253 IETEVENYIQEKKIKDIVVEKNNKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V ++D+I    G+ 
Sbjct: 308 LEKFEKNNILIEGHTEQFGLEEEMY---ELSEKRARTIGNYLIKMKVKNKDQIL-FKGWG 363

Query: 317 HHRLKIASD-PMNSANRRIDILVED 340
             + K  +  P+ + NRR++I + +
Sbjct: 364 SKKPKYPNSSPLKAKNRRVEITILN 388


>gi|163786302|ref|ZP_02180750.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like protein [Flavobacteriales bacterium
           ALC-1]
 gi|159878162|gb|EDP72218.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like protein [Flavobacteriales bacterium
           ALC-1]
          Length = 524

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 16/153 (10%)

Query: 197 KKISSTLSGLVADN----IVKGVLFETTRTGILISIID----QRNTPMFDKSSSIPLPET 248
           K I   +SG   +      +  +        +   ++       N  +FD  S+   P++
Sbjct: 374 KAIKFHMSGFKEEGKERLFISNLKISEGGEDLRRKLMSEGKISTNGILFDSGSANIQPQS 433

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSE 306
           + ++++I +VL       ++I GHTDA         N +LS  RA +   VL+    +S 
Sbjct: 434 LGIVRQISQVLMQDESIKLNIIGHTDA---DGPDDANLKLSKARAAAVKDVLINIYKISA 490

Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           DR++   G    +    +   +  + NRR++ +
Sbjct: 491 DRLT-TDGKGETQPVGDNKTTDGKAQNRRVEFV 522


>gi|187923217|ref|YP_001894859.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187714411|gb|ACD15635.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 168

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
           N   G+       G+ + +     T +FD + S    +   V+ +   +L  S + I + 
Sbjct: 33  NKAVGIEVAPVAGGVAVKL---PETALFDFNKSEVRSDAAAVIDRSAVLLKRSKKPIVVE 89

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           G+TD      +   N  LS  RA +A   L+  G++ DRI +  G A++    ++D    
Sbjct: 90  GYTDN--VGTLEY-NQHLSEARASAAGYALVARGIAMDRI-RTKGNAYNNPVASNDTPEG 145

Query: 328 NSANRRIDILV 338
            + NRR +I+V
Sbjct: 146 RALNRRTEIVV 156


>gi|118591499|ref|ZP_01548896.1| hypothetical protein SIAM614_27927 [Stappia aggregata IAM 12614]
 gi|118435827|gb|EAV42471.1| hypothetical protein SIAM614_27927 [Stappia aggregata IAM 12614]
          Length = 193

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
            ++ L        N  +  L   +         LQ  A +      G  A N +      
Sbjct: 17  SASGLTAQTKLSRNEIINSLQGAQQKVDLTADELQQAALENIQKYPGANAPNTLPLADKL 76

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDA 274
            +     + I        FD  S+   PE+   +  I + L H+         I GHTDA
Sbjct: 77  ASLRQFNVEIT-------FDFDSARIRPESFETVGLIADAL-HTPYLQGQTFFIVGHTDA 128

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              +     N  LSL RA +  + L+ +  V  + +  + G    +L+  ++P  + NRR
Sbjct: 129 ---KGAREYNLELSLKRAQAVREALVTTFRVPGEYLFAV-GLGEEQLRDPANPDAAVNRR 184

Query: 334 IDIL 337
           + ++
Sbjct: 185 VQLI 188


>gi|86747898|ref|YP_484394.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86570926|gb|ABD05483.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 464

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 94/259 (36%), Gaps = 14/259 (5%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D + PP     NK  ++    +T    D  + +       ++  +              +
Sbjct: 214 DIKAPPYVFQANKDPVASTLTLTGYVPDNNVHAALAAAAGRKFFSEKVVDQLKASIGAPQ 273

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KISST 202
                 +     L + +     ++  E         E  ++  R +  +D+ +   + + 
Sbjct: 274 GFAGAVAPALGALSRLSTGTLVVSDREVRLSGDALFEAAVSQIRSELNKDMPQGWTVKAE 333

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS   A + V   + +     +L      ++T  F+ +S+    ++  +L ++ E     
Sbjct: 334 LSVKPAASPVDASVCQQLFDDLL-----GKSTVRFESASATIDKDSAGLLDRLIETAMRC 388

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I + GHTD+         N  LS  RA +    ++++G++ +R  +  G+      
Sbjct: 389 PGASIEVAGHTDSDGEAGF---NQALSEKRARAVVDYMVRAGLTPERF-QAFGYGSRIPL 444

Query: 322 IASDPMN--SANRRIDILV 338
             +D     + NRRID ++
Sbjct: 445 AGNDSDAGKAKNRRIDFVI 463


>gi|108757075|ref|YP_633305.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|17863963|gb|AAL46989.1|AF448145_1 unknown [Myxococcus xanthus]
 gi|108460955|gb|ABF86140.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 249

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + S    +    L  + + +  +   +++ GH D    R     N +LS  RA S  
Sbjct: 150 FGFNESGLSADAQQRLSDLAQCMKTAPGRVTLAGHADE---RGTEEYNLQLSNRRAASVK 206

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
           + L   GV   ++  + G+   R   ++   ++   NRR++
Sbjct: 207 RYLTDLGVPASQLGTV-GYGETRPVNSASSEDAWSENRRVE 246


>gi|325279770|ref|YP_004252312.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311579|gb|ADY32132.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 625

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD       PE+   L+++   L  +    I I GHTD +      + N+RLS +RA+ 
Sbjct: 523 FFDVDDYRLRPESYPELRQLVVFLKQNPEVKIEISGHTDNT---GSDQHNYRLSENRAFE 579

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            Y+ L  + + ++R+    G+   R    +D       NRR +I V
Sbjct: 580 VYKYLFLNHIQKERME-YKGYGKDRPLRTNDTEEGRKENRRTEIRV 624


>gi|260574902|ref|ZP_05842904.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259022907|gb|EEW26201.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 328

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F   ++     +   LQ + + L    +  I++ GHTDA         N  LS  R
Sbjct: 219 DDLVFSSGTAALAEGSYASLQALADYLKAHPDRAIAVVGHTDA---SGPLAVNIALSRKR 275

Query: 292 AYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           A S  QVL+ S GV   ++     GF   R    ++   + NRR+++++   Q
Sbjct: 276 AASVRQVLIDSLGVPATQVIAEGVGFLVPRASNLTEAGRAQNRRVEVMLTSTQ 328


>gi|91225860|ref|ZP_01260829.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01]
 gi|269965437|ref|ZP_06179556.1| outer membrane protein OmpA [Vibrio alginolyticus 40B]
 gi|91189510|gb|EAS75786.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01]
 gi|269829916|gb|EEZ84146.1| outer membrane protein OmpA [Vibrio alginolyticus 40B]
          Length = 320

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  FD +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A S    L++ G+   RI +  G   +    ++D       NRR++++V
Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEVVV 311


>gi|255318428|ref|ZP_05359661.1| OmpA/MotB domain protein [Acinetobacter radioresistens SK82]
 gi|262378658|ref|ZP_06071815.1| outer membrane protein [Acinetobacter radioresistens SH164]
 gi|255304420|gb|EET83604.1| OmpA/MotB domain protein [Acinetobacter radioresistens SK82]
 gi|262299943|gb|EEY87855.1| outer membrane protein [Acinetobacter radioresistens SH164]
          Length = 253

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 13/146 (8%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + +        A   V     +     +   I++      F+  S++       +L+++ 
Sbjct: 118 QMLIQQPYRFNAQLSVNQAEQKIIDDALKNRIVE------FESGSAVLTAAGRQILEEMA 171

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
             L       + I GHTD+         N+ LS +RA +    L+   +  + +    G 
Sbjct: 172 VALHKVGGKKVKIIGHTDS---SGDGNKNFLLSQERAMAVCNYLIAKNIKAENL-STEGM 227

Query: 316 AHHRLKIASDPMNSA--NRRIDILVE 339
              +    +        NRRI+  V 
Sbjct: 228 GSSKPVADNTTAEGRKKNRRIEFEVL 253


>gi|315498712|ref|YP_004087516.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48]
 gi|315416724|gb|ADU13365.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
          Length = 187

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 13/157 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +++ RL  L +     L+   A   +    F         S++   ++  FD   ++   
Sbjct: 41  QQETRLTQLDQTTQEALTRATAAGKLAEGKFNY-------SVVLSDDSIKFDTDKAVLSE 93

Query: 247 ETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
               VL  + E L    + +   I+G TD++        N+RL   RA S  + L   GV
Sbjct: 94  AGKQVLADLAERLKRDNKNVYLEIQGFTDST---GTDDINYRLGNARADSVKRFLNSQGV 150

Query: 305 SEDRISKISGFAHHRL-KIASDPMNSANRRIDILVED 340
           + +R++ IS  A   +   ++    +ANRR+ I+V  
Sbjct: 151 ALNRMASISYGAEQPIAPNSTAQGRAANRRVVIVVLS 187


>gi|269968783|ref|ZP_06182772.1| outer membrane protein, putative [Vibrio alginolyticus 40B]
 gi|269826595|gb|EEZ80940.1| outer membrane protein, putative [Vibrio alginolyticus 40B]
          Length = 213

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            + +   +F   S +  P     ++++ + L       I I+G+   +     A  N  L
Sbjct: 85  QEMQIRVLFANDSDVINPIFTQQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 141

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           S  RA +  + LM +G+S DR++ I G+    L         ++ NRR+   V   +G
Sbjct: 142 SKRRAENVRKELMTNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 198


>gi|260774919|ref|ZP_05883820.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609174|gb|EEX35332.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 188

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  F  +S+   PE+  +L ++   +       + + G+TD+      A  N +LS  R
Sbjct: 76  DSSSFALNSAELKPESKAMLAELVAFMTEFPQSTVEVVGYTDS---SGAASYNQKLSERR 132

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L + G+   RIS   G   +    +++       NRR++I+V
Sbjct: 133 AQSVADALEEQGIDASRISA-RGEGENNPIASNETQQGREQNRRVEIMV 180


>gi|242278716|ref|YP_002990845.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121610|gb|ACS79306.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 400

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               PP +   I      ++ Q +AK  +   +     +  +    ++    I +++   
Sbjct: 237 QMQSPPQNGNTIPQSTPTQQEQPVAKHATPKAAPAPVQSTTQAPKAQSKPRSINLAVQ-- 294

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLS 288
                FD  SS   PE+  +L ++G+ L       + I I GHTD+    +    N++LS
Sbjct: 295 -----FDVDSSQIKPESYSLLNELGKALISDRLKDKRIVIGGHTDSD--ASPEY-NFKLS 346

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            +RA S  + L  +  ++  RI   +GF      + +    +   NRR+ + +
Sbjct: 347 KERAESVKKYLTDNFPIAPQRIG-TTGFGESNPLVPNTTKYNKLLNRRVQVSI 398


>gi|319900153|ref|YP_004159881.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319415184|gb|ADV42295.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 419

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  PE++  + +I +++  +     S+ GHTD++     A  N  LS  R+ S 
Sbjct: 318 FDVGKSVIKPESMGEINRIVQLMTENPTLKFSVEGHTDST---GNATSNQTLSEARSKSI 374

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L++ G++ DR++  SG          A+D   + NRR++ +
Sbjct: 375 VDKLVEMGIAADRLTS-SGKGQTTPIADNATDEGRAKNRRVEFV 417


>gi|242310593|ref|ZP_04809748.1| OmpA/MotB [Helicobacter pullorum MIT 98-5489]
 gi|239522991|gb|EEQ62857.1| OmpA/MotB [Helicobacter pullorum MIT 98-5489]
          Length = 251

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 6/161 (3%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           ++   +       +  KKI S +     +  V          G    I+      +FDK+
Sbjct: 51  QQQADITTDPETTNEVKKIESEIMDFKENTRVSLGPSTIIDEGSRGFILRFNGKLLFDKN 110

Query: 241 SSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHTDASPF--RNIARDNWRLSLDRAYSA 295
            +     E  + L+++  +L        + + G+TD S        +DN  LS  RA   
Sbjct: 111 ETTLKNAEEKLFLKRMALILQKMPANMHLDVIGYTDDSQIIPTQKYQDNLGLSAMRALGV 170

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            +VL+++GV+  +I+ +  G  +  L   ++   + NRR++
Sbjct: 171 ARVLIENGVNPQKITSLGNGATNFVLPNTTEENKAQNRRVE 211


>gi|224534380|ref|ZP_03674958.1| outer membrane protein [Borrelia spielmanii A14S]
 gi|224514482|gb|EEF84798.1| outer membrane protein [Borrelia spielmanii A14S]
          Length = 381

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S+ D      F  +S   L +    L  I ++
Sbjct: 245 IETEVENYIQEKKIKAISVEKNNKGINLSL-DIE----FYPNSFQILQKEYKKLDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V ++D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMY---ELSEKRARAIGNYLIKMKVKNKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|157889026|dbj|BAF80970.1| fibronectin-binding protein [Campylobacter lari]
          Length = 328

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE    +Q++G+VL  + +  +I  GHTD          N +LSL+RA   
Sbjct: 224 FGFDQTDINPEFAQKIQEVGKVLEENPQYYTILEGHTDNI---GPKAYNQKLSLERAKVV 280

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L K+GV++++I    G+   + K ++D     + NRR++
Sbjct: 281 AKELEKTGVTKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321


>gi|154147928|ref|YP_001407122.1| outer membrane fibronectin-binding protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153803937|gb|ABS50944.1| outer membrane fibronectin-binding protein [Campylobacter hominis
           ATCC BAA-381]
          Length = 333

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P+    L+K+  ++  H+   + + G+TD+         N +LS  RA + 
Sbjct: 231 FAFDSAEISPKYYSELEKVSSIMKEHAEYSVRLEGNTDSI---GKEAYNQKLSERRANAV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L+K GV  ++I+ + G         +D     + NRR+D
Sbjct: 288 SKALVKLGVPAEKITTV-GLGEKNPVATNDTAEGRAQNRRVD 328


>gi|77464589|ref|YP_354093.1| OmpA family outer membrane protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389007|gb|ABA80192.1| possible outer membrane protein, OmpA family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 652

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281
            I  +       F+  S+         L  + EV          + I GHTD+       
Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
             N  LS  RA +    L    V   R+  + G+   R    +  +    ANRRI+  + 
Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600

Query: 340 DRQG 343
              G
Sbjct: 601 GEDG 604


>gi|86138174|ref|ZP_01056749.1| OmpA/MotB domain protein [Roseobacter sp. MED193]
 gi|85825201|gb|EAQ45401.1| OmpA/MotB domain protein [Roseobacter sp. MED193]
          Length = 194

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+   P+    L  +   +      +  I GHTD+      AR N RLSL RA   
Sbjct: 93  FDFDSATLRPDQQPKLVNMCASMQALQGTVFQIIGHTDS---SGSARYNERLSLLRAQEV 149

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L+ + G+ ED + K  G        +++P    NRR++
Sbjct: 150 RRHLISNCGIDED-MLKAIGMGEAAPYNSANPRADENRRVE 189


>gi|192290369|ref|YP_001990974.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192284118|gb|ACF00499.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 441

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
            +S +       F++ S++    +  +L K+   +       I + G+TD          
Sbjct: 328 RVSALASAEKINFERRSAVIDKASQPLLDKLAAAIKQCPAVTIEVAGYTDG---AGKKSA 384

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           N  LS  RA +    L K G+   ++    G+   +   A+D     + NRRI+ +V+
Sbjct: 385 NVALSKRRAEAVVASLTKVGIGSVKLVA-EGYGSAKPIAANDTAEGRAQNRRIEFVVK 441


>gi|171060730|ref|YP_001793079.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778175|gb|ACB36314.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 200

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+   P +   L  +   L  +       ++ GH D    R  A  N +LS  RA 
Sbjct: 96  FETNSARLTPSSRQQLDTVAAALKSNQLQAYGFNLEGHADP---RGQASTNRQLSQMRAE 152

Query: 294 SAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           S    L+   G+  DR++ I G          D     NRR+ I+
Sbjct: 153 SVRDYLVATHGIPVDRLAPI-GKGDTEPLNTRDVAAPENRRVTIV 196


>gi|104780902|ref|YP_607400.1| outer membrane protein OprF [Pseudomonas entomophila L48]
 gi|95109889|emb|CAK14594.1| outer membrane protein OprF [Pseudomonas entomophila L48]
          Length = 346

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 240 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRAKAV 296

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             VL  + GV   R+S + G+   R     A++   + NRR++
Sbjct: 297 KDVLTQQYGVESGRVSSV-GYGETRPVADNATEAGRAVNRRVE 338


>gi|256846182|ref|ZP_05551640.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294784699|ref|ZP_06749987.1| OmpA family protein [Fusobacterium sp. 3_1_27]
 gi|256719741|gb|EEU33296.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294486413|gb|EFG33775.1| OmpA family protein [Fusobacterium sp. 3_1_27]
          Length = 195

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S   P+   +L  + E +  +   ++I GHTD   +
Sbjct: 52  EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFIMKNDYELTIEGHTD---Y 106

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
               + N  LS  RA +    L++ G+   RI  I             +    + NRR++
Sbjct: 107 IASNQYNMGLSKRRAEAVKVKLIELGLDPSRIVAIVPKGEEEPVADNKTTEGRAKNRRVE 166

Query: 336 ILVEDR 341
             +  R
Sbjct: 167 FKLVKR 172


>gi|256823578|ref|YP_003147541.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256797117|gb|ACV27773.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069]
          Length = 377

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     PE +  + K+ E L         I+GHTD+    + A  N  LS  RA S 
Sbjct: 270 FDTNKYEVKPEMVAEIAKVAEFLRQYPSVNAEIQGHTDS--VGSSAY-NQGLSERRANSV 326

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
              L+ + G++  R+S   G+         +++   + NRR +
Sbjct: 327 KDYLVSNFGINASRLSA-KGYGEEEPIADNSTEEGRALNRRAE 368


>gi|85705152|ref|ZP_01036252.1| OmpA family protein [Roseovarius sp. 217]
 gi|85670474|gb|EAQ25335.1| OmpA family protein [Roseovarius sp. 217]
          Length = 219

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         L++    +         + GHTDA         N  L + RA + 
Sbjct: 74  FAFNSAELDTGARDTLREQARWIRQFPEVRFRVYGHTDAV---GSDSYNKTLGMRRAQAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  ++ F   +  I +D     NRR
Sbjct: 131 VAFLSSQGISRARLEAVASFGETQPLIVTDGRERRNRR 168


>gi|171315886|ref|ZP_02905116.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171098982|gb|EDT43770.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 220

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++        L K+   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTSAANAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D  +  +G        ++D     + NRR++I ++
Sbjct: 172 DAVAAYLREHGLKADSFAA-TGHGEANPAASNDTVEGRARNRRVEISLQ 219


>gi|260590691|ref|ZP_05856149.1| lipoprotein PG3 [Prevotella veroralis F0319]
 gi|260537352|gb|EEX19969.1| lipoprotein PG3 [Prevotella veroralis F0319]
          Length = 256

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A  +    + + T   G+    +   +  +F  + S         L K+  +
Sbjct: 105 MDKVAREAAQQLPNASVDKVTDANGLECVKVTFDSGILFPLNGSDLNAAAKNDLTKLAGL 164

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  ++   ++I+G+TDA       + N  LS  RA S    L   GV+  +I  + GF  
Sbjct: 165 MKRNSNCDVAIQGYTDA---SGNDKINIPLSQRRASSVSSYLQNQGVTSRQIRSVEGFGS 221

Query: 318 HRLKIASDPMNSANRRIDILVEDRQ 342
               I +  ++  NRR+++ +   Q
Sbjct: 222 QNP-IENKTVSQKNRRVEVYLYASQ 245


>gi|171914446|ref|ZP_02929916.1| OmpA/MotB [Verrucomicrobium spinosum DSM 4136]
          Length = 323

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD + +   PE+   L ++ +++       + + GHTD          N  LS  RA +
Sbjct: 220 FFDTNRTEVKPESKPALDEVAKLMTEDPALKVLVVGHTDTV---GGFEPNRSLSERRAAA 276

Query: 295 AYQVL-MKSGVSEDRISK--ISGFAHHRLKIASDPMNSANRRIDIL 337
               L  K G+S +R+    +S +A      +++   + NRR++++
Sbjct: 277 VVAELKAKYGISAERLFSFGVS-YAAPAATNSTEEGRAQNRRVELV 321


>gi|117922218|ref|YP_871410.1| chemotaxis protein MotB-like protein [Shewanella sp. ANA-3]
 gi|117614550|gb|ABK50004.1| chemotaxis protein MotB-related protein [Shewanella sp. ANA-3]
          Length = 243

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 37/191 (19%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRT----GILISIIDQ------ 231
           + A+     L   +++I +++  L  A+   + +L +         I + I++       
Sbjct: 35  LAAVALIIELTQKSEQIDASIEELKKAEEARRNILIDIKEELAKQNIHVEIVENDTVLRI 94

Query: 232 -RNTPMFDKSSSIPLPET--IVVLQKIGEVL--AHSTEV-------ISIRGHTDASPFRN 279
             +T  F+         T     ++ IG  L  A +T         + + GHTD++    
Sbjct: 95  PESTLSFESGKDTLPENTTVKNEVRLIGIALHKAITTNERWKYLDTVFVEGHTDSNGIWY 154

Query: 280 IARDNWRLSLDRA-----------YSAYQVLMKSGVSEDRISKISGFAHHR---LKIASD 325
             + NW LS DRA             A ++ + +  +   +  +SG+A  R   L+  ++
Sbjct: 155 RGKGNWGLSTDRAVSIWKLWQTEINVAPKLSVLTNYNGQLLFSVSGYADTRRVDLQETTE 214

Query: 326 PMNSANRRIDI 336
              + NRRIDI
Sbjct: 215 EQRARNRRIDI 225


>gi|332559482|ref|ZP_08413804.1| OmpA family outer membrane protein [Rhodobacter sphaeroides WS8N]
 gi|332277194|gb|EGJ22509.1| OmpA family outer membrane protein [Rhodobacter sphaeroides WS8N]
          Length = 652

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281
            I  +       F+  S+         L  + EV          + I GHTD+       
Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
             N  LS  RA +    L    V   R+  + G+   R    +  +    ANRRI+  + 
Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600

Query: 340 DRQG 343
              G
Sbjct: 601 GEDG 604


>gi|237752179|ref|ZP_04582659.1| cadF [Helicobacter winghamensis ATCC BAA-430]
 gi|229376421|gb|EEO26512.1| cadF [Helicobacter winghamensis ATCC BAA-430]
          Length = 307

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS+  PE    ++   + +  +      I GHTD++        N +LS  RA + 
Sbjct: 201 FPFDSSVVAPEYNAEIKDFAQSMKENPSQTAIISGHTDST---GNDEYNQKLSERRANAV 257

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              +++ GV  +R+ +  G+   +    +        NRR++
Sbjct: 258 KDAIIEEGVQAERL-QAKGYGESKPIADNATKEGRQENRRVE 298


>gi|190894192|ref|YP_001984486.1| hypothetical protein RHECIAT_PB0000226 [Rhizobium etli CIAT 652]
 gi|190699853|gb|ACE93936.1| hypothetical protein RHECIAT_PB0000226 [Rhizobium etli CIAT 652]
          Length = 429

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             LPP    +   +    ++   + ++ + L   + + +   V        I++ I   R
Sbjct: 264 ATLPPNGVVRSARIALPPKVVMSSDRLRNFLEPEIREGL---VTVSEDPQQIVVII---R 317

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            + MFD +S       + +L +IG  L   +  + + GHTDA P +++A  +        
Sbjct: 318 ASGMFDSASPEVKKMFLPLLLRIGRSLNGESGSVLLTGHTDAIPVQSLAFPSNDSLSLAR 377

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            SA   ++KS + +    +  G        ++      + NRRI I++   Q
Sbjct: 378 ASAAAEIIKSMMDDPGRVREEGRGSGEPVASNHTPEGRARNRRIQIIITKTQ 429


>gi|332519230|ref|ZP_08395697.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045078|gb|EGI81271.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 235

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++   A+KI   + G            E    GI+++  D+ +   FD +       +  
Sbjct: 82  KMDKQAQKIEEEIPGA---------EVERVDDGIVVT-FDENSGVYFDTAKYNINAASQA 131

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L K+  V     +  I + GHTD+         N  LS +RAY+    L   G+S  R+
Sbjct: 132 TLSKLIGVFREYPDTNILVVGHTDSV---GSEDSNMTLSKNRAYAVTNYLTNQGISNARV 188

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           +  + F   +    +      + NRR++I +   Q
Sbjct: 189 T-TNWFGEGQPTNDNSTKEGRAKNRRVNIAIVPNQ 222


>gi|254516643|ref|ZP_05128702.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
 gi|219675066|gb|EED31433.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3]
          Length = 255

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285
            ++   +   F   S+    ++   L     V+  HS+  + + G+TD+         N 
Sbjct: 144 EVVLTIDRLGFAFDSAALDAKSRSALDAAVAVIKSHSSVKMDVVGYTDS---SGPEEYNQ 200

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           +LS  RA +A   L+  GV+  ++ + +G        ++D       NRR++++V
Sbjct: 201 KLSERRAQAAVDYLVSQGVAAGQL-RATGRGEANPVASNDSRDGRERNRRVELVV 254


>gi|294651528|ref|ZP_06728837.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822551|gb|EFF81445.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 160

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
            ++K   F  T  G  + +       +FD + S   PE    + ++ + L       + I
Sbjct: 34  KMLKQEGFVLTDEGWSLGL---PERLLFDFNKSDIKPEHANEIARLAKQLNKYDLQKLKI 90

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD     N    N +LS +RA S   + +  G  ++ ++ + G    +  + +  + 
Sbjct: 91  VGHTDD--VGNPEY-NQKLSEERAQSVSMIFVNEGFKQNNLT-VIGRGSSQPYLPNTSEE 146

Query: 327 MNSANRRIDILVED 340
             ++NRR+ +++  
Sbjct: 147 NRASNRRVAVIIIP 160


>gi|149278789|ref|ZP_01884924.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pedobacter sp. BAL39]
 gi|149230408|gb|EDM35792.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pedobacter sp. BAL39]
          Length = 175

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKS 240
           +A K +K  +      +   +    DN+ K +       T  GI  +   +    +F  +
Sbjct: 17  VACKTQKIAKSTTPPATEVAADQELDNLKKNLPDNQIARTNEGIKFTFSSE---VLFPTN 73

Query: 241 SSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           SSI    +   L ++ +V++       + I GH+D +       + W LS  RA S    
Sbjct: 74  SSILNEASKKKLAEVAKVISEQKPAPAVLIEGHSDKT--GTAPYNQW-LSEKRAVSVKTY 130

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           L+  G++  +I + +G    +    +        NRR++I + 
Sbjct: 131 LVSLGIAASKI-RTAGQGDTKPVGDNKTKEGRLQNRRVEITLL 172


>gi|126463429|ref|YP_001044543.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105093|gb|ABN77771.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 652

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281
            I  +       F+  S+         L  + EV          + I GHTD+       
Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
             N  LS  RA +    L    V   R+  + G+   R    +  +    ANRRI+  + 
Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600

Query: 340 DRQG 343
              G
Sbjct: 601 GEDG 604


>gi|262402450|ref|ZP_06079011.1| outer membrane protein [Vibrio sp. RC586]
 gi|262351232|gb|EEZ00365.1| outer membrane protein [Vibrio sp. RC586]
          Length = 223

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I GHTD++
Sbjct: 99  VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDST 158

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S    L+  GV+  R     G          ++    + NRR
Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 215 VEIQILPLK 223


>gi|308273873|emb|CBX30473.1| hypothetical protein N47_K27130 [uncultured Desulfobacterium sp.]
 gi|308275118|emb|CBX31717.1| hypothetical protein N47_E52290 [uncultured Desulfobacterium sp.]
          Length = 355

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 16/185 (8%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           KD  K  +  K +   +    PP + E+        R       +   L      N  KG
Sbjct: 180 KDKPKVEETPKVVEPPKAAEEPPKAVEEPPKAVEPPRTDSDGDGVYDDLDKCP--NTPKG 237

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
              +    G  I          FD +    L +   +L  +  V+  + +  + ++GHTD
Sbjct: 238 ATVDC--RGCWIL-----QGVYFDTAKWNILSKYFPILDNVVSVIKKNPDMKLEVQGHTD 290

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331
           +   R  A+ N +LS +RA S  +  +  GV    I    GF        +D     + N
Sbjct: 291 S---RGTAKYNRKLSENRAKSVVEYFVSKGVDRS-ILTAKGFGFTVPAAPNDNAEDMAKN 346

Query: 332 RRIDI 336
           RR+++
Sbjct: 347 RRVEL 351


>gi|148261844|ref|YP_001235971.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|146403525|gb|ABQ32052.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
          Length = 203

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+   P+ +  L ++G  L     +     + GHTD +     A  N  LS  RA 
Sbjct: 97  FATGSAKLTPQAVTELDRLGRALTDKTLAAYHFRVVGHTDTT---GAASTNLALSQARAA 153

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           +    LM    +   R+ + +G     L + + P   N ANRR+ I+
Sbjct: 154 AVKTYLMSKFDIPATRL-QATGVGEADLLVPTGPNVANRANRRVQII 199


>gi|256420785|ref|YP_003121438.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256035693|gb|ACU59237.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 586

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P +   L K+  +L    +  I I  HTD +     A  N +LS  RA +    L+  
Sbjct: 484 LTPASHPALDKLVALLKDHPQMEIEISAHTDNT---GSAAYNQQLSEKRALNCVAYLVDK 540

Query: 303 GVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRRIDILVEDR 341
           G+ + R+ +  G+   +    +       +P     NRRI++ +  +
Sbjct: 541 GIDKKRL-QYKGYGATKPVAPNTNPDGTDNPEGRRLNRRIELRILKQ 586


>gi|66045337|ref|YP_235178.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. syringae B728a]
 gi|63256044|gb|AAY37140.1| Thrombospondin type 3 repeat:OmpA/MotB:OmpF [Pseudomonas syringae
           pv. syringae B728a]
 gi|330973748|gb|EGH73814.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 344

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPSSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   +     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGETKPVADNATEAGRAVNRRVE 336


>gi|119357876|ref|YP_912520.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355225|gb|ABL66096.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 337

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P +   L +I +++       + + GHTD          N  LS  RA + 
Sbjct: 235 FDTNKSDIKPASSPALVEIAKLMKSQPALKLHVVGHTDNV---GGYEFNMGLSKRRADAV 291

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L+++ G++  R++  +G A+      +  +   + NRR++++
Sbjct: 292 VASLVRNHGIAPARLAA-NGVAYLAPVAPNTTEAGRAKNRRVELV 335


>gi|84499777|ref|ZP_00998065.1| OmpA domain protein [Oceanicola batsensis HTCC2597]
 gi|84392921|gb|EAQ05132.1| OmpA domain protein [Oceanicola batsensis HTCC2597]
          Length = 641

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    ++  +L  I EVL       + I GHTD+         N +LS DRA + 
Sbjct: 499 FEPGSATVTGDSRAILDDIAEVLKFCGPVDLEIGGHTDSQ---GREIMNEQLSQDRADTV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L +  V        +G+   +    +D       NRRI+  +
Sbjct: 556 LAELRQRRVKTAGFVA-TGYGETQPIADNDTEEGREENRRIEFSL 599


>gi|254249905|ref|ZP_04943225.1| Outer membrane protein [Burkholderia cenocepacia PC184]
 gi|124876406|gb|EAY66396.1| Outer membrane protein [Burkholderia cenocepacia PC184]
          Length = 221

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I  ++     +F    +   P     L ++    A  T   +++ G TD+         
Sbjct: 107 VIERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 163

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
           N  LS  RA +    L   G+  D ++    G A      A+    ++NRR++I ++
Sbjct: 164 NLALSKRRAEAVAAYLKAHGLKTDSMTVSGRGKADPVASNATPEGRASNRRVEIRLQ 220


>gi|325526573|gb|EGD04123.1| OmpA/MotB domain-containing protein [Burkholderia sp. TJI49]
          Length = 112

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           R   +FD   +   P  +  L ++ +         + + G+TD+    + + +N  LSL 
Sbjct: 4   RGDALFDFDKANLKPAGVRALDEVIDNARGKRFRLVEVAGYTDS--IGSDSYNN-ALSLR 60

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           RA S    L   G+  +R+  + GF         A+D   + NRR++I++E
Sbjct: 61  RAKSVADYLRAHGLDAERM-AVDGFGKSNPVASDATDAGRAQNRRVEIVLE 110


>gi|307719340|ref|YP_003874872.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
 gi|306533065|gb|ADN02599.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
          Length = 826

 Score = 72.6 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 15/147 (10%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV----VLQKIGEVLAHST-EV 265
           +V  V       G  IS+ D    P     +    PE        L ++  +L       
Sbjct: 680 VVTDVYVVIKDGGAYISVPDIHFAPFTADYTDKVPPEIREENLRTLDEVAAMLKKFPQYT 739

Query: 266 ISIRGHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           + + GH  +  + +  R           LS  RA +  + L+  GV   R+  I G+   
Sbjct: 740 VQLEGHAVSLLWFDPERAKIEHQEVLIPLSRARAEAVRKALISRGVDPSRL-SIVGYGGS 798

Query: 319 RLKIASDPMNSA--NRRIDILVEDRQG 343
           R  +    +     NRR++ L++++ G
Sbjct: 799 RPIVPFSDLKKRWVNRRVEFLLKEKSG 825


>gi|313674495|ref|YP_004052491.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941193|gb|ADR20383.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 672

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
             I + +       G  IS+    N   F + S   L  +   L ++  +L  S    I 
Sbjct: 545 QEITRDIYLSPLSEGSFISL----NNVYFAQGSYEILEASHPELDRLIRLLRSSETMQIE 600

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASD 325
           I GHT+    R   R N  LS DRA +    ++++G+ + RI K  G+   +      ++
Sbjct: 601 IGGHTER---RGSPRLNRILSQDRADAVKAYIVQAGIDQKRI-KTKGYGSSKPVTDGRTE 656

Query: 326 PMNSANRRIDILVED 340
                NRR++  +  
Sbjct: 657 IERRQNRRVEYTILS 671


>gi|148979919|ref|ZP_01815777.1| outer membrane protein [Vibrionales bacterium SWAT-3]
 gi|145961523|gb|EDK26825.1| outer membrane protein [Vibrionales bacterium SWAT-3]
          Length = 221

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   FD  S          L+ +  +L    +  + I GHTD++
Sbjct: 97  VQVERVGENQLLLRLENGIGFDSGSYALESSIHNTLRGVARILVEYPDTSLVIEGHTDST 156

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  LS  RA S    L+   V+  R     G         ++       NRR
Sbjct: 157 ---GSESTNQILSERRAESVRAFLISQDVAAGRAIA-RGNGERYPLCDNNTSRGRACNRR 212

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 213 VEIQILPLK 221


>gi|289673277|ref|ZP_06494167.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. syringae FF5]
 gi|330977632|gb|EGH77539.1| thrombospondin type 3 repeat-containing OmpA/MotB protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 344

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   +     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336


>gi|4580975|gb|AAD24562.1|AF117970_1 OprF [Pseudomonas viridiflava]
          Length = 344

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +   ++ GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPSSYGDIKNLADFMQQYPQTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   R     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATESGRAVNRRVE 336


>gi|148266343|ref|YP_001233049.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399843|gb|ABQ28476.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 454

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    + K+G+ +        +I GHTD       +  N +LS +RA + 
Sbjct: 347 FDTGKADIKPQYREEIAKVGDYMKKYPTTTAAIEGHTDNV---GGSEYNMKLSQERAENV 403

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L+++ G+   R+S   G+   R    ++       NRRI+ +++
Sbjct: 404 VNYLVENFGIERSRLSA-KGYGFTRRIAYNNTAEGRQKNRRINAVID 449



 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE    + K+G+ +       + I GHTD       A  N  LS  RA S 
Sbjct: 223 FDIDKADIRPEYHDEVAKVGDFMKKYPTTTTVIEGHTDNV---GTAEYNMGLSQRRAESV 279

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L++  G+   R+S   G+   R     +++     NRRI+ +++
Sbjct: 280 VNYLVEKFGIENSRLSA-KGYGLTRPVADNSTNEGKQLNRRIEAIID 325


>gi|330502392|ref|YP_004379261.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916678|gb|AEB57509.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 210

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
             + + + D +    FD   +    E+   ++ + + +    +    + GHTD+      
Sbjct: 95  EAVRVEL-DVK----FDFDKAQVKQESYGDIKALADFMKQYPQTSTVVEGHTDSV---GS 146

Query: 281 ARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              N  LS  RA +   VL+ + GV   R+  + G+   R    +      + NRR++
Sbjct: 147 DAYNQGLSERRASAVRDVLVNQYGVESGRVQAV-GYGESRPVADNATADGRAINRRVE 203


>gi|227538150|ref|ZP_03968199.1| possible outer membrane protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241993|gb|EEI92008.1| possible outer membrane protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 628

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F  +    LP +   L  +   L  +    I I GHTD +      + N  LS +R
Sbjct: 522 NNIFFALNKYDLLPSSKSDLNTLVLFLQENPLIRIEIGGHTDNT---GNDQLNKTLSDNR 578

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +    L+  G+S +R+    G+  ++    +D     + NRR +  +
Sbjct: 579 AKAVVTYLIARGISANRLLA-KGYGSNQPLATNDTETGKALNRRTEFKI 626


>gi|197105040|ref|YP_002130417.1| outer membrane protein [Phenylobacterium zucineum HLK1]
 gi|196478460|gb|ACG77988.1| outer membrane protein [Phenylobacterium zucineum HLK1]
          Length = 190

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284
            ++   ++  F        PE    L ++ E L      +   I+GHTD++        N
Sbjct: 77  QVVLSDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEIQGHTDST---GPEAYN 133

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            +L   RA +  + L K+GV+ +R+  IS +       ++D     + NRR++I+V  
Sbjct: 134 DQLGEARAEAVRKHLAKAGVALNRMGTIS-YGEEAPVASNDTAEGRAQNRRVEIIVLS 190


>gi|328470357|gb|EGF41268.1| hypothetical protein VP10329_06152 [Vibrio parahaemolyticus 10329]
          Length = 225

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             K+  +  +      S   +    R  ++   A+K S+ ++ L        +  ET   
Sbjct: 49  APKTNTELRHPEWGYASASHVSTAPRVNQMARAAEKKSNNVTSLEMFLDRHNIPHETIGG 108

Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
           G ++I + +Q +   F   S+     +   L+K+G  LA  +   + I GH D++   + 
Sbjct: 109 GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 165

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
                 LS  RA    + ++ S +   R+    GF  +  +   A+    + NRR+++++
Sbjct: 166 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 221


>gi|226953967|ref|ZP_03824431.1| OmpA family outer membrane protein [Acinetobacter sp. ATCC 27244]
 gi|226835321|gb|EEH67704.1| OmpA family outer membrane protein [Acinetobacter sp. ATCC 27244]
          Length = 159

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
            ++K   F  T  G  + +       +FD + S   PE    + ++ + L       + I
Sbjct: 33  KMLKQEGFVLTDEGWSLGL---PERLLFDFNKSDIKPEHATEIARLAKQLNKYDLQKLKI 89

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326
            GHTD     N    N +LS +RA S   + +  G  ++ ++ + G    +  + +  + 
Sbjct: 90  VGHTDD--VGNPEY-NQKLSEERAQSVSMIFVNEGFKQNNLT-VIGRGSSQPYLPNTSEE 145

Query: 327 MNSANRRIDILVED 340
             ++NRR+ +++  
Sbjct: 146 NRASNRRVAVIIIP 159


>gi|163801667|ref|ZP_02195565.1| Conserved hypothetical outer membrane protein [Vibrio sp. AND4]
 gi|159174584|gb|EDP59386.1| Conserved hypothetical outer membrane protein [Vibrio sp. AND4]
          Length = 216

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G++  +        F    S   P     L+++   L      I++ GHTD    + 
Sbjct: 97  TGEGLVARLH-------FGFDHSSLTPMGKKALKQLASSLNKRDSAITVDGHTDN---KG 146

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
               N  L L RA +A   L  +GV  + I  +  F       ++      + NRR++I 
Sbjct: 147 SDGYNQDLGLRRALAASNGLTNAGVDNNNIV-VRSFGESEPMASNATPEGRAQNRRVEIW 205

Query: 338 VEDRQG 343
           V D+  
Sbjct: 206 VADKDA 211


>gi|329943863|ref|ZP_08292134.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531569|gb|EGF58405.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 384

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+   P     LQ + + L        +SI GHTD    ++ A  N  LS  RA +
Sbjct: 220 FASDSADLTPAADTQLQTVADQLNQYPDGGTLSIVGHTDD--IQDDAY-NQPLSEKRANA 276

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
               L +    +      +G      ++   +D   +ANRR++I +    G
Sbjct: 277 VKDRLQQLTTLDKWSPTTTGKGESEPRVKETTDEARAANRRVEITLTPTGG 327


>gi|239995142|ref|ZP_04715666.1| TolC family type I secretion outer membrane protein [Alteromonas
           macleodii ATCC 27126]
          Length = 648

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+  LPE    LQ + E L +     + I GH         A  N RLS  RA + 
Sbjct: 540 FASNSTEVLPEYENSLQDVIEALNNDPNSGVIIHGHAS---LDGDAAYNQRLSERRAKAV 596

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
             +LM K+ +   RI+ + G+   R  +   SD  N+ NRRI+
Sbjct: 597 ASLLMNKANIEARRITAV-GYGESRPLVDEESDAANARNRRIE 638


>gi|296447839|ref|ZP_06889751.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296254639|gb|EFH01754.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 202

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F ++S+    + + V +++G+ L     +     I GHTDA   R     N  LS  RA 
Sbjct: 94  FARNSATLRGKDLEVARQLGKALGDEKLAGGKFLIMGHTDA---RGSDEANQALSERRAE 150

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +   +L    GV+ DR+  + G+    L+    P  + NRR+ ++
Sbjct: 151 AVKHLLTTEFGVAPDRLITV-GYGETHLENPKRPFAAENRRVQVV 194


>gi|2062640|gb|AAC35418.1| CadF precursor [Campylobacter coli]
          Length = 326

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P     +++I ++L  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 223 FGFDKVDINPAFEEKIKEIAQLLDENARYDTILEGHTDN--IGSRAY-NQKLSERRAESV 279

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L K GV +DRI  + G+   + +  ++     + NRR+D
Sbjct: 280 AKELEKFGVDKDRIQTV-GYGQDKPRSRNETKEGRADNRRVD 320


>gi|212633550|ref|YP_002310075.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212555034|gb|ACJ27488.1| OmpA [Shewanella piezotolerans WP3]
          Length = 222

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDAS 275
              TR+G  I I++  N   F    +        VL  +  V L +    +++ GHTD+ 
Sbjct: 99  VSVTRSGDTI-ILNMPNDVTFGVDQTDLSQRAKQVLNSVALVALEYDETKLNVMGHTDS- 156

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                A  N RLS  RA      LM   V   R+    G    R   +++     + NRR
Sbjct: 157 --SGAASYNMRLSQVRASEVASYLMSRKVPSARVVS-HGVGEDRPVASNETKAGRAENRR 213

Query: 334 IDILV 338
           ++I++
Sbjct: 214 VEIIL 218


>gi|238757126|ref|ZP_04618313.1| OmpA domain protein [Yersinia aldovae ATCC 35236]
 gi|238704504|gb|EEP97034.1| OmpA domain protein [Yersinia aldovae ATCC 35236]
          Length = 433

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 234 TPMFDKSSSIPLPETI--VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            P+FD +S+   P      +L  + ++L H+    I I GH+D +        N  +S  
Sbjct: 312 APLFDSNSTKLKPNAQTNEILHSLLQLLEHNQGSKILIVGHSDNT---GSDSFNMTISEQ 368

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           RA      L+K+         I G        ++D       NRR+++L+  +Q
Sbjct: 369 RALVVRDWLIKNSSLSSENFIIRGMGSLEPVASNDTKIGQDQNRRVEVLLLPKQ 422


>gi|130681|sp|P22263|PORF_PSESY RecName: Full=Outer membrane porin F; Flags: Precursor
 gi|151407|gb|AAA25910.1| oprF [Pseudomonas syringae]
          Length = 344

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   +     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336


>gi|330824570|ref|YP_004387873.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329309942|gb|AEB84357.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 219

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+      A  N +LS+ RA +
Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213


>gi|315637845|ref|ZP_07893035.1| fibronectin-binding protein [Campylobacter upsaliensis JV21]
 gi|315482086|gb|EFU72700.1| fibronectin-binding protein [Campylobacter upsaliensis JV21]
          Length = 327

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   +   P     +Q I +VL  +     I + GHTD +        N +LS  RA  
Sbjct: 223 FEFDKTTINPAFESRIQNIAKVLEENEKYNTI-LEGHTDNT---GSRAYNQKLSERRAQR 278

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
               LMK G+ + RI  + G+   + + +++     + NRR++
Sbjct: 279 VANELMKFGIEKSRIE-VKGYGQDKPRSSNETKEGRADNRRVE 320


>gi|254510529|ref|ZP_05122596.1| OmpA family protein [Rhodobacteraceae bacterium KLH11]
 gi|221534240|gb|EEE37228.1| OmpA family protein [Rhodobacteraceae bacterium KLH11]
          Length = 208

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        +L +  + +         + GHTDA      +  N RL   RA +A
Sbjct: 65  FAFDSAQLDASAQRILLQQADWIKQFPEVRFRVYGHTDAV---GTSAYNKRLGQRRANAA 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L + G+S  R+  +  F   R  +A+   +  NRR
Sbjct: 122 VAFLTQQGISRSRLEAVVSFGKSRPLVATPDRDRRNRR 159


>gi|121594804|ref|YP_986700.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|222110597|ref|YP_002552861.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|120606884|gb|ABM42624.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
 gi|221730041|gb|ACM32861.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 218

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+      A  N +LS+ RA +
Sbjct: 111 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 212


>gi|157963436|ref|YP_001503470.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157848436|gb|ABV88935.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 224

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDAS 275
              TR+G  I I++  N   F    +        VL  +  V L +    +++ GHTD+ 
Sbjct: 99  VSVTRSGDNI-ILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDS- 156

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
                   N RLS  RA      L +  V   R++   G    +   +++     + NRR
Sbjct: 157 --SGAESYNLRLSQVRASEVANYLTRQKVPAQRVAS-HGMGESKPIASNETKQGRAENRR 213

Query: 334 IDILV 338
           ++I++
Sbjct: 214 VEIIL 218


>gi|330898192|gb|EGH29611.1| outer membrane porin OprF [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 344

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
            QVL+ + GV   R++ + G+   +     A++   + NRR++
Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336


>gi|325286304|ref|YP_004262094.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321758|gb|ADY29223.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 372

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
               GI +  I      +F   S +   E    L+++   L  +    ++I GH+D    
Sbjct: 236 VEDEGINLDEIYVIKDLLFTSDSYVINKEAKGQLRELVRHLKRNPRLNVTIYGHSDNE-- 293

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
              A+ N  LSL+RA S  + L+ +G++ DRI K  G+        ++       NRR++
Sbjct: 294 -GDAKYNKLLSLNRAKSVGEFLLDNGLTFDRI-KWQGYGDEIPLATNNSETGRLKNRRVE 351

Query: 336 ILVEDRQ 342
            +V + +
Sbjct: 352 FVVSESK 358


>gi|170288056|ref|YP_001738294.1| OmpA/MotB domain-containing protein [Thermotoga sp. RQ2]
 gi|170175559|gb|ACB08611.1| OmpA/MotB domain protein [Thermotoga sp. RQ2]
          Length = 288

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +++     +  E    G LI + D      F+  S+    E   +L K+G+ V+ H+T V
Sbjct: 88  LSEEYKGKITVEERDEGTLIVLKDM---VFFEPGSAKLTAEAKELLAKVGQIVIEHTTNV 144

Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + + G+ D   P  N     NW LS  RA S     +   + E R+
Sbjct: 145 LEVYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189



 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
              ++       W   Y+D +T+L+ FF+ +  ++       + +          N  + 
Sbjct: 3   KKREEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGNPPSV 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G       P  +S+  I   +     +    + +   ++       +   F   +++ 
Sbjct: 63  LMGGRSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFEPGSAKL 122

Query: 140 SEHCKNSLTRDSE 152
           +   K  L +  +
Sbjct: 123 TAEAKELLAKVGQ 135


>gi|124008000|ref|ZP_01692700.1| peptidoglycan associated periplasmic protein, putative [Microscilla
           marina ATCC 23134]
 gi|123986584|gb|EAY26383.1| peptidoglycan associated periplasmic protein, putative [Microscilla
           marina ATCC 23134]
          Length = 472

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 209 DNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
               K V+ + T+  TG  I++ D      FD +S+     + + L ++ ++L  +    
Sbjct: 341 KGASKNVMVKLTKLKTGAKIALNDIY----FDFNSAALKDSSFIELNRVVKMLQTNPKVK 396

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           +SI  HTD          N +LS  RA S    L +  + ++R+    GF   R  + + 
Sbjct: 397 LSIEAHTDNV---GSKAKNLKLSNRRAKSVADYLKEKKIDQNRLV-TKGFGEDRPLVPNT 452

Query: 326 P--MNSANRRIDI-LVEDRQ 342
                + NRR+++ ++   Q
Sbjct: 453 SKKNKAKNRRVELRVIRSTQ 472


>gi|91791747|ref|YP_561398.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91713749|gb|ABE53675.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 201

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F  +S +  P+    ++ I  ++       ++I GH      +     N  LS 
Sbjct: 73  QELKILFPTNSYVLDPQYYGQIELIANMMKQYPNTNVTIEGHCSK---KGSYELNMALSH 129

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI--DI 336
           +RA +  QVL    G++  R++ I G++  R    SD   +   NRR+  +I
Sbjct: 130 NRANAVTQVLTSQFGIAPSRLNAI-GYSFDRPVDMSDTEEAHRRNRRVIAEI 180


>gi|330820746|ref|YP_004349608.1| putative outer membrane protein A precursor [Burkholderia gladioli
           BSR3]
 gi|327372741|gb|AEA64096.1| putative outer membrane protein A precursor [Burkholderia gladioli
           BSR3]
          Length = 222

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E T    +I  ++     +F    +   P     L ++           +S+ G+TD+  
Sbjct: 101 EPTPAVAVIEHVNLSGDVLFASDHATLAPSARESLDQLLSERTDRVYSEVSVTGYTDSV- 159

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRID 335
                  N  LS  RA S    L   G+    +     G A       +    ++NRR++
Sbjct: 160 --GSDEYNLDLSKRRAESVAAYLSAHGLKTGSMKVSGRGKADPVASNMTAEGRASNRRVE 217

Query: 336 ILV 338
           I +
Sbjct: 218 ITL 220


>gi|330817987|ref|YP_004361692.1| OmpA family protein [Burkholderia gladioli BSR3]
 gi|327370380|gb|AEA61736.1| OmpA family protein [Burkholderia gladioli BSR3]
          Length = 216

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATDQYAITPAFAPLLNDLASTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L++ GV+  R+    G          A++   + NRR++I +   Q
Sbjct: 165 VTALVQRGVAGGRLGA-QGMGASNPVADNATEAGRAQNRRVEIYLRAPQ 212


>gi|254467600|ref|ZP_05081009.1| OmpA/MotB domain protein [Rhodobacterales bacterium Y4I]
 gi|206684348|gb|EDZ44832.1| OmpA/MotB domain protein [Rhodobacterales bacterium Y4I]
          Length = 191

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    +    L  + E +      +  I GHTD+      A  N RLSL RA   
Sbjct: 90  FDFDSAALRADQAPKLANMCESMKLMGGTVFQIIGHTDS---SGSASYNERLSLLRAQEV 146

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L+ S GV ED + K  G          +P    NRR++
Sbjct: 147 RRHLISSCGVPED-MLKAIGMGETAPFNQDNPRADENRRVE 186


>gi|218515615|ref|ZP_03512455.1| hypothetical conserved membrane protein [Rhizobium etli 8C-3]
          Length = 246

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P+   +LQK+  V+       I I GHTDA      AR N  LS+ RA
Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               +       +  +R+  + G           P    NRR++
Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241


>gi|148975688|ref|ZP_01812519.1| outer membrane protein [Vibrionales bacterium SWAT-3]
 gi|145964761|gb|EDK30013.1| outer membrane protein [Vibrionales bacterium SWAT-3]
          Length = 355

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+    E    +Q I EVL       ++I GHTD++     A  N  +S  RA + 
Sbjct: 235 FATNSTELSDEGKAAVQPIVEVLQTYPQSTVNIVGHTDST---GAAEYNMMISKKRAAAV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              + + G+   RI+  SG    +   ++D     + NRR++
Sbjct: 292 AAYIEEQGIESSRITA-SGEGEEKPIASNDTAEGRAQNRRVE 332


>gi|326405348|ref|YP_004285430.1| hypothetical protein ACMV_32010 [Acidiphilium multivorum AIU301]
 gi|325052210|dbj|BAJ82548.1| hypothetical protein ACMV_32010 [Acidiphilium multivorum AIU301]
          Length = 203

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+   P+ +  L ++G  L     +     + GHTD +     A  N  LS  RA 
Sbjct: 97  FATGSAKLTPQAVTELDRLGRALTDKTLAAYHFRVVGHTDTT---GAASTNLALSQARAA 153

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           +    LM    +   R+ + +G     L + + P   N ANRR+ I+
Sbjct: 154 AVKTYLMSKFDIPATRL-QATGVGEADLLVPTGPNVANRANRRVQII 199


>gi|290559940|pdb|2KGW|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of
           Ompatb, A Pore Forming Protein From Mycobacterium
           Tuberculosis
          Length = 129

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 28  FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 84

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 85  ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 128


>gi|254253774|ref|ZP_04947091.1| OmpA/MotB [Burkholderia dolosa AUO158]
 gi|124898419|gb|EAY70262.1| OmpA/MotB [Burkholderia dolosa AUO158]
          Length = 232

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S+   P     L K+   L    +     I + G+TDA    + A +   LS  RA
Sbjct: 130 FATDSATLTPAARAALDKL---LNRQGDRHFSRIEVTGYTDA--VGSDAYNV-ALSRRRA 183

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
            +    L + G++ D       G A      A+    ++NRR++I ++
Sbjct: 184 DAVAAYLRERGLNADSFVATGKGKADPGASNATAEGRASNRRVEISLQ 231


>gi|149915641|ref|ZP_01904167.1| OmpA/MotB [Roseobacter sp. AzwK-3b]
 gi|149810533|gb|EDM70376.1| OmpA/MotB [Roseobacter sp. AzwK-3b]
          Length = 218

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L      +         + GHTD          N  L   RA + 
Sbjct: 74  FAFDSAHLDAAARNTLNAQASWIKQFPEVRFRVYGHTDKV---GSESYNRHLGQRRANAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  +   +  + ++     NRR
Sbjct: 131 VNYLTSHGISRSRLEAVVSYGETQPVVVTEGREPRNRR 168


>gi|187925731|ref|YP_001897373.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187716925|gb|ACD18149.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 584

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291
           F  +S+      +  L++   VL           + + G++D        + N +LS  R
Sbjct: 478 FASASAHVPASAVDDLKQSARVLNACAGNGKTARLEVAGYSDNV---GGEQANLQLSKQR 534

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           A +    L+K+GV  D +    G+   R   ++D  +    NRRI+ +
Sbjct: 535 ANAVRAYLVKTGVPADSLLA-QGYGQARPVASNDTASGRFANRRIEFV 581


>gi|298524392|ref|ZP_07011801.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298494186|gb|EFI29480.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 181

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 80  FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 137 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 180


>gi|296447841|ref|ZP_06889753.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296254641|gb|EFH01756.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 209

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+        V++++G  L           I GHTDA   R  A+ N +LS  RA 
Sbjct: 99  FALNSADLRDSDRKVVEQLGVALGEPALKGGTFLIMGHTDA---RGSAKLNQKLSERRAN 155

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  +VL+   GV+ +R+  + G+    LK  +D   S NRR+ ++
Sbjct: 156 AVKKVLVAEYGVAPERLVAV-GYGQTHLKNPNDGFASENRRVQVV 199


>gi|172064119|ref|YP_001811770.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171996636|gb|ACB67554.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 224

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  ++     +F    +   P     L K+    A  T   +++ GHTD+         N
Sbjct: 111 VEHVNLAGDALFATGLATLTPAARASLDKLLSERADRTYTQVTVTGHTDSV---GNDAAN 167

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L   G++   +  +SG        ++      ++NRR+DI ++ 
Sbjct: 168 LALSKRRAETVAGYLKAHGLNAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 224


>gi|83646354|ref|YP_434789.1| flagellar motor protein [Hahella chejuensis KCTC 2396]
 gi|83634397|gb|ABC30364.1| Flagellar motor protein [Hahella chejuensis KCTC 2396]
          Length = 263

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 47/204 (23%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           L   S++   A+K   + + + K I   +   + +  +  V      T + I      + 
Sbjct: 45  LTQKSEQWDDAIKEIAKAEQVRKDILREIEQELNEKNIP-VKISDNDTVLRI----PEDV 99

Query: 235 PMFDKSS-SIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIA-R 282
             F +    IP  +    +  +IG+VL H+            I + GHTD  P+RN + +
Sbjct: 100 LTFRQGRFDIPKDQLHQDIALEIGKVLFHTISKNSRWQYLDTIFVEGHTDKVPYRNSSIK 159

Query: 283 DNWRLSLDRAYSA----YQVLMKS---GVSEDRI----SKISGFAHHRLK--IASDPM-- 327
            NW LS  RA S       +L ++   G  ++ +      +SG+A  R      +DP   
Sbjct: 160 GNWGLSTFRAISVWNFWNTMLEENERLGSLKNHMGKTLFSVSGYADTRPVPCTNADPNVT 219

Query: 328 ---------------NSANRRIDI 336
                             NRRIDI
Sbjct: 220 LKELCPVGVLEESESQQKNRRIDI 243


>gi|308271281|emb|CBX27889.1| hypothetical protein N47_G32130 [uncultured Desulfobacterium sp.]
          Length = 403

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD      + +   VL  +  ++  + +  + I+GHTD+   R   + N +LS +RA S 
Sbjct: 301 FDTEKWNIVSQYFPVLDNVVGIIKKNPDMKLEIQGHTDS---RGTEKYNQKLSENRAKSV 357

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            + L   GV   +++   G+ +      +D     + NRR+++
Sbjct: 358 LEYLAGKGVVRSKLTA-KGYGYSVPAAPNDTEEGMAKNRRVEL 399


>gi|325286251|ref|YP_004262041.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324321705|gb|ADY29170.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 701

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 88/276 (31%), Gaps = 19/276 (6%)

Query: 81  KGIFDEQNPPERSSQNKIDLS--IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
           +G  D  N  +  + NK D S  I+E   K                   +N I    N  
Sbjct: 428 EGFKDVVNVGQPINSNKDDFSYIINEETQKGYFASNRKGGKGDDDIYSFKNLIVEEVNEN 487

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
                   +         L    D      KE           + L    K +LQ   + 
Sbjct: 488 AIAGVVTEIVTGDLMPNALVTLLDENNIKLKEIVTEEDGSFVFEDLDSNTKYKLQANKET 547

Query: 199 I-SSTLSGLVADNIVKGVLFETTRTGILISIID-----QRNTPMFDKSSSIPLPETIVVL 252
                L+    +N V  V     +   +I+I +     +     FD   S    +  V L
Sbjct: 548 FFDEELNTATKENQVVNVDIAMRKLHDMIAIENGIKKLKTEKIFFDFDKSYIRQDASVEL 607

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            K+ +V+       I I  HTD    R     N  LS  RA S  + ++  G+ E+RI  
Sbjct: 608 DKLVDVMTEYPNMKIKIESHTD---VRGNNAYNKYLSDKRAKSTRKYIISKGIDENRIIS 664

Query: 312 ISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
             G+   +L          S   +  NRR + ++ +
Sbjct: 665 AIGYGEEQLINGCEDGVNCSREKHQENRRSEFIIVE 700


>gi|146281853|ref|YP_001172006.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri
           A1501]
 gi|145570058|gb|ABP79164.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri
           A1501]
          Length = 254

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 36/187 (19%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234
           M  +++L++   +    +  L     V+  + +       R GI + + +        N 
Sbjct: 44  MDIQQKLEERQVQFEQEIEELKKAEQVRRTILDEAVEALRRRGIKVEVSENHTVLSIPND 103

Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283
            + FD  +            +IG+V+               I I GHTD  P    + + 
Sbjct: 104 LLGFDTGAYEIHSAYQARALEIGKVINEVISRDDRVEFLDTIFIEGHTDNRPLPGFMGKG 163

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIAS---DPMNS 329
           NW LS  RA S +Q    +   E+++S+           +SG+   R  +A    +    
Sbjct: 164 NWGLSTFRAISLWQFWGDALAREEQLSRLNNKDGKPLFSVSGYGETRPAVADQVTEEDFK 223

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 224 RNRRIDI 230


>gi|296536326|ref|ZP_06898436.1| outer membrane protein [Roseomonas cervicalis ATCC 49957]
 gi|296263348|gb|EFH09863.1| outer membrane protein [Roseomonas cervicalis ATCC 49957]
          Length = 368

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +        ++ +  +  +      I + GH D        + N RLS  RA +
Sbjct: 266 FFDFDRADLTDRARQIIAEAAQNSSRVQATRIEVAGHADR---AGSPQYNQRLSQRRADA 322

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
               L++ GV+   I+ +  F   R  + +        NRR++I++
Sbjct: 323 VAAELVRLGVARSAIT-VQAFGESRPLVPTADGVREPQNRRVEIVL 367


>gi|86608243|ref|YP_477005.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556785|gb|ABD01742.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 357

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 91/240 (37%), Gaps = 20/240 (8%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
           L  +  I    +++K   +  +++ Q    N    + +  +   K+    +         
Sbjct: 128 LGYNNQIAHEILNMKGTYSTPEERAQWPFQNARENTAAYLAARGKSPEGDERFVSAYFVV 187

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           +TD +  I +        ++  ++  +  K R Q L + + S  SG +   I +      
Sbjct: 188 NTD-DWEITRGSGQIPTGITLGRVDVVDVKPRQQRL-ELVESITSGEINQAISRDG---- 241

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278
                 I++       +F   S          L +I +++   +   I + GHTDA+   
Sbjct: 242 -----RIALY----GILFAYDSDQIEAAAEPTLAEIAKLMRERTDLSILVVGHTDAT--- 289

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
                N  LS  RA +    L++ G+ + R+  +  GF+       ++   + NRR++++
Sbjct: 290 GSFDYNLGLSRRRAEAVVNRLVQLGIEQRRLYPVGVGFSAPVASNTTEEGRAKNRRVELV 349


>gi|268680520|ref|YP_003304951.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618551|gb|ACZ12916.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 335

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P  +  +QK+ + +  +    + + GHTD+   +     N +LS  RA + 
Sbjct: 233 FDFDKSVVKPAFMPEIQKVADFMKQNPGYSVVLEGHTDS---KGSDAYNQKLSDSRAKAV 289

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
            + L   GV+  +++    +   +    +D     + NRR+D
Sbjct: 290 AKALSNLGVAAAKVT-TEAYGESKPVATNDTEAGRAENRRVD 330


>gi|221640500|ref|YP_002526762.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161281|gb|ACM02261.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 652

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281
            I  +       F+  S+         L  + EV          + I GHTD+       
Sbjct: 487 RIRRVLAGQKITFEPGSAEIDRSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
             N  LS  RA +    L    V   R+  + G+   R      ++    ANRRI+  + 
Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGNEEGREANRRIEFTLL 600

Query: 340 DRQG 343
              G
Sbjct: 601 GEDG 604


>gi|90023231|ref|YP_529058.1| HAD family hydrolase [Saccharophagus degradans 2-40]
 gi|89952831|gb|ABD82846.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 380

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS+  PE    ++K+ + +A     V+ I GHTD    R  A  N  LS  RA + 
Sbjct: 269 FDSNSSVVKPEYFAEIRKVADFMAQYENSVVVIEGHTDT---RGAAAYNKSLSQKRADAV 325

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
             VL+    V++ R++ + G+   +            ANRR+
Sbjct: 326 AAVLVSEMNVAKRRVTSV-GYGEEQPIADESTREGLVANRRV 366


>gi|269968226|ref|ZP_06182255.1| putative lipoprotein [Vibrio alginolyticus 40B]
 gi|269827149|gb|EEZ81454.1| putative lipoprotein [Vibrio alginolyticus 40B]
          Length = 281

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 177 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 233

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 234 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 281


>gi|261251362|ref|ZP_05943936.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
 gi|260938235|gb|EEX94223.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
          Length = 329

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS     +   L ++   L    E  + + GHTD++     +  N  LS+ RA   
Sbjct: 221 FDSESSELNESSSQQLSQLVATLKEYPEAKVEVVGHTDST---GSSSYNQALSIQRATEV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L   G+   RI  I G    +    +      + NRR+++ +
Sbjct: 278 SNFLESEGIDSSRI-SIDGHGETQPIAPNSTSQGRANNRRVEVTI 321


>gi|149913423|ref|ZP_01901956.1| OmpA domain protein [Roseobacter sp. AzwK-3b]
 gi|149812543|gb|EDM72372.1| OmpA domain protein [Roseobacter sp. AzwK-3b]
          Length = 638

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS        ++  I E+L    +  I I GHTD+         N RLS +RA + 
Sbjct: 499 FEPGSSTIDGNGAAIMDDIAEILRECGDIRIEIGGHTDSQ---GREEMNERLSQERAQAV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
              L    V     +   G+   +    +D      ANRRI+  +   Q
Sbjct: 556 LNELRARRVLTSSFTA-KGYGESQPIADNDTEEGREANRRIEFRLLRPQ 603


>gi|285017932|ref|YP_003375643.1| hypothetical protein XALc_1141 [Xanthomonas albilineans GPE PC73]
 gi|283473150|emb|CBA15656.1| hypothetical protein XALc_1141 [Xanthomonas albilineans]
          Length = 231

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +  R G  I++    +   FD + S   P+    L  + + L+   + +I + GHT
Sbjct: 104 NTGIDVRRDGDNITLN-LPDGITFDFNQSTLKPQFYSALNGVAKTLSEYNQTMIEVVGHT 162

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331
           D          N RLS  RA S    L   GV  +RI  + +G  +     +++   + N
Sbjct: 163 DNI---GSDAVNQRLSEQRASSVAAYLTAQGVQPERIQTLGAGKKYPIADNSTEAGRAQN 219

Query: 332 RRIDILVED 340
           RR++I V  
Sbjct: 220 RRVEIRVVP 228


>gi|262371451|ref|ZP_06064767.1| outer membrane protein A precursor [Acinetobacter johnsonii SH046]
 gi|262313590|gb|EEY94641.1| outer membrane protein A precursor [Acinetobacter johnsonii SH046]
          Length = 159

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST- 263
                 ++K   F  T  G  + +       +F    S         L+ + + L     
Sbjct: 28  NYKQARMLKKQGFTLTEEGWTLRL---PEKLLFGFDQSDIQASQKPALEALSKQLQQYNL 84

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322
             I + GHTD     + +  N  LS  RA +  Q+ +++G     I  + G    +  + 
Sbjct: 85  NKIKVVGHTDN--IGDPSY-NQTLSEKRASTVSQIFIETGFKTQNIQSM-GRGASQPLVE 140

Query: 323 -ASDPMNSANRRIDILVED 340
            +S+   + NRR++I++  
Sbjct: 141 NSSEENRALNRRVNIIIIP 159


>gi|258545330|ref|ZP_05705564.1| OmpA family protein [Cardiobacterium hominis ATCC 15826]
 gi|258519433|gb|EEV88292.1| OmpA family protein [Cardiobacterium hominis ATCC 15826]
          Length = 244

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           VA++ V+      +   + I      +  +FD   ++  P     L  I + L    E V
Sbjct: 108 VANSGVQVQRVNESTIQLNIQ-----SEVLFDVDKAVIKPNFYQPLGSIAQTLQQYPETV 162

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + + G TD        + N +LS  RA S  Q L + G++  R   + G+        ++
Sbjct: 163 VHVYGFTDG---SGSPQHNLQLSQRRAQSVAQYLAQQGINSQRFV-VQGYGEQYASAENN 218

Query: 326 PMNSANRRIDILVE 339
           P +   RR+ I ++
Sbjct: 219 PQD---RRVAIYIK 229


>gi|86142013|ref|ZP_01060537.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like [Leeuwenhoekiella blandensis MED217]
 gi|85831576|gb|EAQ50032.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like [Leeuwenhoekiella blandensis MED217]
          Length = 435

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+   P +   +++I + + + +T    I GHTD+     +      LS  RA + 
Sbjct: 333 FDSGSASIQPASYASIKQIAQAIQSDATGNYLITGHTDSDGDVALNMP---LSESRAEAV 389

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L+   G+   R+ + +G          + + +   NRR+ I
Sbjct: 390 KAALVSEFGIDSSRL-QTAGKGSSEPVSTENTVTAKALNRRVTI 432


>gi|258622653|ref|ZP_05717674.1| putative lipoprotein [Vibrio mimicus VM573]
 gi|262171774|ref|ZP_06039452.1| outer membrane protein [Vibrio mimicus MB-451]
 gi|258585109|gb|EEW09837.1| putative lipoprotein [Vibrio mimicus VM573]
 gi|261892850|gb|EEY38836.1| outer membrane protein [Vibrio mimicus MB-451]
          Length = 223

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I GHTD++
Sbjct: 99  VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 158

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S    L+  GV+  R     G          ++    + NRR
Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 215 VEIQILPLK 223


>gi|254500568|ref|ZP_05112719.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222436639|gb|EEE43318.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 193

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +  + E      ++  +    K +     L +     +      +  + +        + 
Sbjct: 21  ASAQTELSRNQIINSLQGAQEKVEVSADALQRAALENIQKYPGADSPQTIPMYQQLASLR 80

Query: 226 ---ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFR 278
              I I        FD  S+   PE+   +  I + L H+         I GHTDA   +
Sbjct: 81  QFNIEIT-------FDFDSARIRPESYEAVGLIADAL-HTPYLQGQTFFIVGHTDA---K 129

Query: 279 NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
                N  LS  RA +  + L+ +  V    +  + G    +L+  +DP  + NRR+ ++
Sbjct: 130 GDRTYNLELSQRRAQAIREALVTTFQVPGSTLFSV-GLGEEQLRDPADPFAAVNRRVQLI 188


>gi|281411904|ref|YP_003345983.1| OmpA/MotB domain protein [Thermotoga naphthophila RKU-10]
 gi|281373007|gb|ADA66569.1| OmpA/MotB domain protein [Thermotoga naphthophila RKU-10]
          Length = 288

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +++     +  E    G LI + D      F+  S+    E   +L K+G+ V+ H+T V
Sbjct: 88  LSEEYKGKITVEERDEGTLIVLKDM---VFFETGSAKLTVEAKELLAKVGQIVIEHTTNV 144

Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + I G+ D   P  N     NW LS  RA S     +   + E R+
Sbjct: 145 LEIYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189



 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79
               +   +   W   Y+D +T+L+ FF+ +  ++       + +          N  + 
Sbjct: 3   KKRKEEQKSSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGNPPSV 62

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G       P  +S+  I   +     +    + +   ++       +   F   +++ 
Sbjct: 63  LMGGKSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFETGSAKL 122

Query: 140 SEHCKNSLTRDSE 152
           +   K  L +  +
Sbjct: 123 TVEAKELLAKVGQ 135


>gi|87121178|ref|ZP_01077069.1| Thrombospondin type 3 repeat:OmpA/MotB [Marinomonas sp. MED121]
 gi|86163670|gb|EAQ64944.1| Thrombospondin type 3 repeat:OmpA/MotB [Marinomonas sp. MED121]
          Length = 200

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+  S+    +    ++K+ + +  +    + I GHTD          N  LS  RA
Sbjct: 76  KVFFETDSTEIRFQYYKEIKKLADFMKDNPSSKVVIEGHTDN---SGRQSYNQSLSYKRA 132

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI--DILVEDR 341
            +   +L++S  +S  R+  I G++  R   ++        NRR+  +I ++ +
Sbjct: 133 QAIADILIQSFKISAKRVKAI-GYSESRPIASNASAEGKKKNRRVVAEISIQTK 185


>gi|323498434|ref|ZP_08103430.1| outer membrane protein OmpA [Vibrio sinaloensis DSM 21326]
 gi|323316507|gb|EGA69522.1| outer membrane protein OmpA [Vibrio sinaloensis DSM 21326]
          Length = 322

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
             Q  T  F  +S+   PE+   L K+ + L    +  + + G+TD       A  N  +
Sbjct: 205 TQQLGTGSFKLNSTELNPESASQLDKLVDFLNTYPQATVEVIGYTDT---SGAASYNQMI 261

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA S    L   GV   RIS   G   +    ++        NRR++++V
Sbjct: 262 SEKRAQSVAAALEAKGVDASRISA-KGEGENDPIASNATREGREMNRRVEVIV 313


>gi|167622915|ref|YP_001673209.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167352937|gb|ABZ75550.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 356

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 17/119 (14%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           +IS+ D  ++ +    S          L  + E L  S E I +I+G+TD+   +  A  
Sbjct: 243 VISLFDFDSSELTHSGS----------LAPVIERLKQSPEAIANIKGYTDS---KGNATY 289

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           N  LS  RA +    L+ +G+  ++I  + G+      + +D       NRR+ I ++ 
Sbjct: 290 NQALSERRAQAVADYLIAAGIKPEQIE-VHGYGEQFPLMKNDTPEHRHENRRVLIHIQS 347


>gi|323497435|ref|ZP_08102453.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
 gi|323317518|gb|EGA70511.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
          Length = 222

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C+ +  +++  G+    ST     I       +   + +     +++  +      + 
Sbjct: 15  SGCQATQRQNATTGESETNSTTTGAIIGALAGAAVGVATGDDAKDRRKRALIGATGGAVV 74

Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253
               G   D   + +  E   +G+ +        ++   N   F  +S          L 
Sbjct: 75  GGGVGYYFDKQEEALRQELLNSGVQVERVGENQLLLRLENGIGFATASHTLDSGIRNTLN 134

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +  +L    +  + I G TD++        N  LS  RA S    L+  GV+  R    
Sbjct: 135 GVARILVEYPDTSLVIDGFTDST---GSDTTNQLLSERRAESVRSYLVSQGVAAGRAIA- 190

Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            G          ++    + NRR++I +   +
Sbjct: 191 RGNGERHPLCTNSTAEGRACNRRVEIQILPLK 222


>gi|289761034|ref|ZP_06520412.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM 1503]
 gi|289708540|gb|EFD72556.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM 1503]
          Length = 232

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  +P    +L ++ + L    +  ++I G+TD +        N  LS  RA   
Sbjct: 131 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 187

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L+  GV+ D I+ + G        ++      + NRR++I+V
Sbjct: 188 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 231


>gi|190895263|ref|YP_001985556.1| hypothetical protein RHECIAT_PC0000936 [Rhizobium etli CIAT 652]
 gi|190700924|gb|ACE95006.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652]
          Length = 246

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P+   +LQK+  V+       I I GHTDA      AR N  LS+ RA
Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               +       +  +R+  + G           P    NRR++
Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241


>gi|88802038|ref|ZP_01117566.1| outer membrane protein [Polaribacter irgensii 23-P]
 gi|88782696|gb|EAR13873.1| outer membrane protein [Polaribacter irgensii 23-P]
          Length = 450

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQ-RNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           T++G+ ++     V+    + G     +D      +F   S+         L  +  ++ 
Sbjct: 317 TVAGIASEGGCPEVITNEAKMG-----MDTFAEAILFTLESANFQRGVRKDLDGMLAIIN 371

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
              +   +IRG+TD          N +LS  RA +    L+K+G+   R++ ++GF    
Sbjct: 372 EFPQANFAIRGYTD---VSGSVSGNLKLSNSRANAVKDYLVKNGIDAARLT-VAGFGQES 427

Query: 320 LKIASDPMNSA--NRRIDILVED 340
              ++        NRR+++ V +
Sbjct: 428 PTASNKTRAGRIQNRRVEVKVTN 450


>gi|107025501|ref|YP_623012.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116693317|ref|YP_838850.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170737407|ref|YP_001778667.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|105894875|gb|ABF78039.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116651317|gb|ABK11957.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|169819595|gb|ACA94177.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 221

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I  ++     +F    +   P     L ++    A  T   +++ G TD+         
Sbjct: 107 VIERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 163

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
           N  LS  RA S    L   G+  D I+    G A      A+    ++NRR++I ++
Sbjct: 164 NLALSKRRAESVAAYLKAHGLKTDSITVSGRGKADPVASNATPEGRASNRRVEIRLQ 220


>gi|168703394|ref|ZP_02735671.1| OmpA/MotB domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKG-IF 84
               GSWK+ YADF+T +MAFFLVMW I A D   ++++  YF +P G +    S G + 
Sbjct: 2   AKGGGSWKVAYADFVTAMMAFFLVMW-IGAQDVKVRQSVANYFIDPAGVSKKPVSDGAVL 60

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST-----NQKKQYQRLENNIFYLSNSQQ 139
           +  +    + Q ++       +    V     +      N      R             
Sbjct: 61  ETPSSGPVAGQLQVAGGRGTRVPSGGVPSPSTAAILNWINADAARSRHWKGEAQRVREAA 120

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +     + +R  E+ +    S  L   +       +P + K+ + +  ++   + +A  +
Sbjct: 121 AAQKAVNESRTPEEVEIAQLSQLLASDLAGTVPKDMPEVYKDLLFSAFKEVNWEQVAGTL 180


>gi|322417797|ref|YP_004197020.1| hypothetical protein GM18_0255 [Geobacter sp. M18]
 gi|320124184|gb|ADW11744.1| conserved repeat domain protein [Geobacter sp. M18]
          Length = 2257

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF----RNIARDNWRLSL 289
           P F    +    E    L ++ E+L       I + GHTD        RNI  +N  LS 
Sbjct: 827 PHFPTFGAELSGEDRKELDRLAELLRRFDINHIEVTGHTDLVRIAPRSRNIYANNTALSF 886

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
            RA S  + L  +         ++G        ++  +   + NRR+++ V
Sbjct: 887 ARARSVGRYLTAALHLPPESLDLTGRGEREPVASNGMEAGRAQNRRVEVKV 937


>gi|259419273|ref|ZP_05743190.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259345495|gb|EEW57349.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 1617

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F    +      + VL++  + L        V  I GHTD        + N  LS  RA 
Sbjct: 465 FATGKADIREAGLGVLKQAADALKALGAENYVFLIEGHTD---ITGSDKVNLPLSDARAK 521

Query: 294 SAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           S  Q  ++ +G++ +R+  + G+        +        NRR++I
Sbjct: 522 SVEQYFVESAGIAPERLQTV-GYGSRIPLATNATDRGKQTNRRVEI 566


>gi|91785602|ref|YP_560808.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|91689556|gb|ABE32756.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 584

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291
           F  +S+      +  L +   VL           + + G++D          N +LS  R
Sbjct: 478 FASASARVPASAVEDLNQSAHVLNACAGNGKTARLEVAGYSDNV---GGEAANLQLSKQR 534

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           A +    L+++GV  D +    G+   R   ++D  +    NRRI+ +
Sbjct: 535 AEAVRAYLVRTGVPADSLIA-QGYGDARPVASNDTASGRFANRRIEFV 581


>gi|327193535|gb|EGE60427.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512]
          Length = 246

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P+   +LQK+  V+       I I GHTDA      AR N  LS+ RA
Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               +       +  +R+  + G           P    NRR++
Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241


>gi|240172204|ref|ZP_04750863.1| outer membrane protein a OmpA [Mycobacterium kansasii ATCC 12478]
          Length = 332

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +L ++   L    +  +++ G++D          N+ LS+ RA + 
Sbjct: 231 FKNDGVSLTPADNQILSQVAAKLKACPDARVTVNGYSDN---GGGEGINFPLSVQRATTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L   GV+ D I+   G+       ++D     + NRR++I+V
Sbjct: 288 ADFLAAQGVARDHITA-RGYGSANPIASNDTPEGRAKNRRVEIVV 331


>gi|239501745|ref|ZP_04661055.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB900]
          Length = 349

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 224 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 280

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 281 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 339

Query: 342 Q 342
           Q
Sbjct: 340 Q 340


>gi|254282997|ref|ZP_04957965.1| outer membrane fibronectin-binding protein [gamma proteobacterium
           NOR51-B]
 gi|219679200|gb|EED35549.1| outer membrane fibronectin-binding protein [gamma proteobacterium
           NOR51-B]
          Length = 227

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I+   +   F   S+    +   VL    E +       + + GH D+         N  
Sbjct: 116 IVFSGDVLRFAFDSAELPADAASVLADAVEFVDAMGGKKLIVSGHADS---SGPDAYNQS 172

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           LS  RA +    L++SG+ E ++  + G+        +      + NRR++I
Sbjct: 173 LSQRRADAVKAFLVESGIPERQLEAV-GYGETMPVADNATASGRAQNRRVEI 223


>gi|262376326|ref|ZP_06069556.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308927|gb|EEY90060.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 492

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 111/339 (32%), Gaps = 23/339 (6%)

Query: 11  NDQFIIIKKKVAIDDTPNNLGSW-KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
           N + ++ ++ + + +       W  I++   +   +  FLV   +    +D+        
Sbjct: 152 NQEPVLAEQTIIVQEERKTGFLWPFIIF--LILAGLILFLVRSCMQDDVEDSNTQATSEV 209

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ---YQR 126
                  +  S G   E    +    N   + I ++  K   +  IG      +    + 
Sbjct: 210 AAAQPASLRLSTGSNGEIVSCQLQLNNPQYMEILQNEIKQIFNYNIGCGALSSEVYHSEF 269

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           ++ +               SL     +      +    + +  +       ++      +
Sbjct: 270 IDQDTIPTVLRTMQGMPNVSLDWIGNQVSVRAATNAEAERLAAQIRSLAKNVTVVTQQPL 329

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            R   +     +    L+ +  DN    V      T + + II+      FD +S+    
Sbjct: 330 NRSDVINTANSEAEQALASIKTDN----VKALDVATALNLQIIN------FDTASTEVPE 379

Query: 247 ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
              +VL +   +L  +  VI  + GH DA        +N  LS+ RA +    L+  GV+
Sbjct: 380 VNKLVLDQAAALLQRAPHVILKVTGHADAQ---GSEAENKVLSVQRAQAITSYLVGKGVN 436

Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
             ++  + G    +    +        NRR+   V + +
Sbjct: 437 PAQLQAV-GMGEDQPVEPNATPAGQFQNRRVTFEVVNTE 474


>gi|322418762|ref|YP_004197985.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320125149|gb|ADW12709.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 465

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    + K+ + +   +T    I GHTD +        N +LS  RA + 
Sbjct: 358 FDSGKADIKPQYRDEIAKVADYMKRYTTTTAVIEGHTDNT---GSPSQNMKLSQQRAQNV 414

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L+ + G+   R+S   G+   R    +D       NRRI+ +++
Sbjct: 415 VDYLVNNFGIERSRLSA-KGYGATRRVAYNDTPEGRQKNRRINAVID 460



 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +I   E    + ++G  +         I GHTD          N  LS  RA + 
Sbjct: 234 FDIDQAIIRTELHDQIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNMDLSQRRAEAV 290

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L++  G+   R+S   G+   R     A++     NRRI+ +++
Sbjct: 291 VSHLVEQYGIDRSRLSA-KGYGFTRPIADNATEEGRQKNRRIEAVID 336


>gi|254229577|ref|ZP_04922989.1| rickettsia 17 kDa surface antigen family [Vibrio sp. Ex25]
 gi|151937860|gb|EDN56706.1| rickettsia 17 kDa surface antigen family [Vibrio sp. Ex25]
          Length = 269

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 165 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 221

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 222 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 269


>gi|149200848|ref|ZP_01877823.1| OmpA family protein [Roseovarius sp. TM1035]
 gi|149145181|gb|EDM33207.1| OmpA family protein [Roseovarius sp. TM1035]
          Length = 220

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         L++  + +         + GHTDA         N  L + RA + 
Sbjct: 74  FAFNSAELDAGARDTLREQAQWIRQFPEVRFRVYGHTDAV---GSDSYNKSLGMRRAQAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  ++ F   +  I +      NRR
Sbjct: 131 VAFLTSQGISRARLEAVASFGETQPLIVTQGRERRNRR 168


>gi|148269399|ref|YP_001243859.1| OmpA/MotB domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734943|gb|ABQ46283.1| OmpA/MotB domain protein [Thermotoga petrophila RKU-1]
          Length = 288

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265
           +++     +  E    G LI + D      F+  S+    E   +L K+G+ V+ H+T V
Sbjct: 88  LSEEYKGKITVEERDEGTLIVLKDM---VFFETGSAKLTVEAKELLAKVGQIVIEHTTNV 144

Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           + I G+ D   P  N     NW LS  RA S     +   + E R+
Sbjct: 145 LEIYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LREKRM 189



 Score = 44.5 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 19/46 (41%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66
              +   +   W   Y+D +T+L+ FF+ +  ++       + + 
Sbjct: 3  KKRKEEQKSSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVA 48


>gi|283956854|ref|ZP_06374327.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791580|gb|EFC30376.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|157415702|ref|YP_001482958.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386666|gb|ABV52981.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748343|gb|ADN91613.1| Outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315930990|gb|EFV09965.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|148925647|ref|ZP_01809335.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845657|gb|EDK22748.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|57238501|ref|YP_179632.1| fibronectin-binding protein [Campylobacter jejuni RM1221]
 gi|57167305|gb|AAW36084.1| fibronectin-binding protein [Campylobacter jejuni RM1221]
 gi|315058932|gb|ADT73261.1| Outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|121612147|ref|YP_001001127.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006020|ref|ZP_02271778.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249779|gb|EAQ72738.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|86152850|ref|ZP_01071055.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843735|gb|EAQ60945.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|86149287|ref|ZP_01067518.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152031|ref|ZP_01070244.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88596498|ref|ZP_01099735.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|205356091|ref|ZP_03222858.1| outer membrane fibronectin binding protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|218563079|ref|YP_002344858.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|85840069|gb|EAQ57327.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841139|gb|EAQ58388.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88191339|gb|EAQ95311.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360785|emb|CAL35585.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|205345934|gb|EDZ32570.1| outer membrane fibronectin binding protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|284926685|gb|ADC29037.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315927426|gb|EFV06764.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930550|gb|EFV09590.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 319

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|167589365|ref|ZP_02381753.1| OmpA family domain protein [Burkholderia ubonensis Bu]
          Length = 333

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+   L ++ ++L  +    + I GHTD          N  LS  RA + 
Sbjct: 231 FDTDKAQVKPESKPQLDEMAKLLTGNPALKVYIVGHTDNQ---GAFARNADLSQKRAEAV 287

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
            Q L  +  ++  R+    G A      ++  D   + NRR++++
Sbjct: 288 AQALASTYRIAPARLVA-KGVASLSPVASNGDDAGRAQNRRVELV 331


>gi|255530070|ref|YP_003090442.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343054|gb|ACU02380.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 445

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ +SS+   ++   L K+  VL  +   ++++G+  +      A  N +LS DRA S  
Sbjct: 345 FEFNSSVLKTDSYPTLDKLSSVLRENGGKVTVKGYASSE---GTAAYNLKLSKDRANSVK 401

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
             L+ SGV+  ++    G+       ++D       NRR++
Sbjct: 402 TYLVNSGVNASQVV-TKGYGEANPIASNDTEEGRIQNRRVE 441


>gi|103488577|ref|YP_618138.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98978654|gb|ABF54805.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 230

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 18/151 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +    KK+    +G            +  R G  + +        FD +S++   +    
Sbjct: 82  MDQQEKKLRERTAGT---------GIDVERQGDQLVLN-MPGDVTFDLNSAMVKSQFRSA 131

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +   LA      I + GHTD++        N  LS  RA S    L   G+   R+ 
Sbjct: 132 LDNVAATLAEYPSTYIDVYGHTDST---GSETYNQGLSERRAASVADYLAGRGIQRARM- 187

Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338
              G+   +LK A +   +    NRR++I +
Sbjct: 188 ATLGYGESQLKCAPERTEADYQCNRRVEIRI 218


>gi|332527567|ref|ZP_08403614.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332111970|gb|EGJ11947.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 214

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            +I  PE    L  +          + I  GHTDA+        N +LS+ RA +    L
Sbjct: 111 KAILKPEAKAKLDDLAAKAKAVNLEVVIAVGHTDAT---GPDGYNQKLSVKRADAVKAYL 167

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 168 VDQGIEKNRVY-TEGKGEKQPVADNKTREGRAKNRRVEIEV 207


>gi|170697803|ref|ZP_02888889.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria IOP40-10]
 gi|170137305|gb|EDT05547.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria IOP40-10]
          Length = 404

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R   L  LA+ +   L   VA   V+ +    +        +  R   +F    +  
Sbjct: 251 ETRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDA------LTLRFGGLFAPGDAAV 304

Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A  T    + + G+ D++  R+     N  LS  RA    Q+L+ 
Sbjct: 305 APWGASVVASAGREIAVLTGSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364

Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +GVS  RIS + +G A       +    + NRR+++ + D
Sbjct: 365 AGVSAPRISVEGNGEADSLADNGTAAGRARNRRVEVTITD 404


>gi|163742214|ref|ZP_02149602.1| OmpA family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384544|gb|EDQ08925.1| OmpA family protein [Phaeobacter gallaeciensis 2.10]
          Length = 211

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        VL +    +         + GHTDA      A  N  L L RA +A
Sbjct: 68  FAFDSAQLDGNAHAVLDQQAHWIRQFPEVRFRVFGHTDAV---GSASYNKALGLRRARAA 124

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +  F   +  I +      NRR
Sbjct: 125 VNYLVGRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 162


>gi|93005138|ref|YP_579575.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
 gi|92392816|gb|ABE74091.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
          Length = 533

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           KG  +  +     ++ K  +          ++A        ++A  ++++ + +  DN+ 
Sbjct: 306 KGDTITVNAADTAALTKLVSDLQAAAPAMTVIAEGPLNEQTEIADSLTASEAAM--DNLG 363

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
           +          + + +++      F+   ++       +L +  +++     + + I GH
Sbjct: 364 QNPDPRDVARALSLQVVN------FEVDKAVIPDANKALLDRAVKLMEQVPNMTLMIIGH 417

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329
           TD +   + A  N +LS +RA +    L+  GV   ++    G         +  D    
Sbjct: 418 TDKT--ADAAY-NLKLSEERAQAMKAYLVAQGVDPSKLM-TKGMGETDPIADNTTDQGRF 473

Query: 330 ANRRIDILVEDRQG 343
            NRRI+ +V D   
Sbjct: 474 RNRRIEFVVYDETA 487


>gi|189500991|ref|YP_001960461.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496432|gb|ACE04980.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides BS1]
          Length = 350

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   ++  P +  V+ +I ++L      V+ + GHTD          N  LS  RA +
Sbjct: 247 FFDSGKAVIKPASKPVIAEIAKLLKQDPSLVLHVVGHTDN---AGGYTFNMGLSRKRALA 303

Query: 295 AYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337
               L +   ++  R+     G+        S    + NRR++++
Sbjct: 304 VVSALARQHNIASSRLIANGVGYLAPVATNTSAAGRAKNRRVELV 348


>gi|172065209|ref|YP_001815921.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171997451|gb|ACB68368.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 220

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++        L K+   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTSAATAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L   G+  D     +G        ++D     + NRR++I ++
Sbjct: 172 DAVAAYLRGHGLKAD-AFAATGHGEANPAASNDTVEGRARNRRVEISLQ 219


>gi|218709383|ref|YP_002417004.1| putative outer membrane protein [Vibrio splendidus LGP32]
 gi|218322402|emb|CAV18555.1| putative outer membrane protein [Vibrio splendidus LGP32]
          Length = 204

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   P  +  ++++   L       I ++G+  AS   N    N +LS +RA +
Sbjct: 85  LFANDSAEIKPVFLSQIRQMAAFLKRYENTSIQLQGY--ASKVGNAEY-NLKLSEERAVN 141

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRI 334
             + L+ +G+   R+  + G+     L   ++  ++ NR++
Sbjct: 142 VRRALISNGIPPSRVYTV-GYGDAGFLDNDTETNHALNRKV 181


>gi|262165460|ref|ZP_06033197.1| outer membrane protein [Vibrio mimicus VM223]
 gi|262025176|gb|EEY43844.1| outer membrane protein [Vibrio mimicus VM223]
          Length = 193

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I GHTD++
Sbjct: 69  VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 128

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S    L+  GV+  R     G          ++    + NRR
Sbjct: 129 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 184

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 185 VEIQILPLK 193


>gi|260772262|ref|ZP_05881178.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
 gi|260611401|gb|EEX36604.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
          Length = 327

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
             + ++  F   S     E+   L K+   L    +  + I GHTDA+     A  N  L
Sbjct: 210 FQRLDSSSFAFDSVSLNQESKQQLTKLVRFLNQYPQAKVVITGHTDAT---GPAAYNQTL 266

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA +    L++ G+   RI+   G        ++        NRR+DI +
Sbjct: 267 SEKRAKAVADALVEQGIQRSRITW-RGEGETNPIASNSTAEGRELNRRVDITI 318


>gi|332524171|ref|ZP_08400398.1| outer membrane protein, ompa family [Rubrivivax benzoatilyticus
           JA2]
 gi|332107507|gb|EGJ08731.1| outer membrane protein, ompa family [Rubrivivax benzoatilyticus
           JA2]
          Length = 178

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279
             G    + D     +F+  +    P  I  L ++G  LA +    + + GHTD      
Sbjct: 60  PEGDDWQL-DLSMALLFEFDADRLAPLQIERLGRLGRELAEAGIHRMHVEGHTDNV---G 115

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
            A  N  LSL RA S  + L  +G     + ++ G    R      ++   + NRR+ ++
Sbjct: 116 AASYNQALSLRRAASVARALSGAGFDAAGL-QVRGLGAARPIADNTNEAGRARNRRVTLI 174

Query: 338 V 338
           V
Sbjct: 175 V 175


>gi|307944419|ref|ZP_07659759.1| outer membrane porin F [Roseibium sp. TrichSKD4]
 gi|307772168|gb|EFO31389.1| outer membrane porin F [Roseibium sp. TrichSKD4]
          Length = 164

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           + +F + S+     +  +L      L       + I+GH D          N  LS  RA
Sbjct: 46  SILFLEGSAALDENSQALLVNQATWLKTYPNWLVKIQGHADD---PGTEAANKTLSTQRA 102

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
                 L+  GV   R+  + G+   R     DP      NRR+
Sbjct: 103 EVVQAALIAQGVDAKRLW-VKGYGIERPVTDCDPEACQRLNRRV 145


>gi|256829593|ref|YP_003158321.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578769|gb|ACU89905.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 376

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S   PE    L      +       V+ I GHTD+         N +LS  RA +
Sbjct: 267 FDFDKSDIKPEYHQELADFASYMRQQQSFTVVEIAGHTDSV---GTDEYNQKLSERRAKA 323

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
               L+   G+  + +    G+   +    +D     + NRRI
Sbjct: 324 VRDYLVNELGMDTN-LFSAVGYGESKPIATNDTDAGRAENRRI 365


>gi|186477828|ref|YP_001859298.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194287|gb|ACC72252.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 242

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L              ++I G+TD++   +   +N RLS  RA S 
Sbjct: 139 FAVGSATLTPFATAKLDDFVAANQGVDVDRLTIAGYTDST--GSAELNN-RLSAARARSV 195

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              L  +G+       + G+        +      + NRR++I V+ +
Sbjct: 196 QGYLATAGLRASAWD-VQGYGSASPVAPNKTAIGRAKNRRVEIQVDGK 242


>gi|83643990|ref|YP_432425.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83632033|gb|ABC28000.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 327

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+   L +I +++       + I GHTD          N  LS  RA + 
Sbjct: 225 FDTDKADIKPESAETLAEIAKLMKSQPSLKVLIVGHTDN---AGALDYNRSLSERRAKAV 281

Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
              L+    +  +R++ +  G A       ++   + NRR++++
Sbjct: 282 MDALVSQYKIGAERMTALGVGMAAPVASNENEAGKAKNRRVELV 325


>gi|332662636|ref|YP_004445424.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331450|gb|AEE48551.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 550

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+  L  ++ VL K+ E++    + ++ + GHTD          N RLS  R  + 
Sbjct: 447 FETNSAKLLASSLEVLDKVAEIMNRYPDFMLYMDGHTDNV---GEEATNLRLSESRVLAC 503

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
              L   G+S   I +  GF   +    +        NRR++  VE +
Sbjct: 504 SAYLQTKGISAANI-RTQGFGESKPLADNKTAAGRRQNRRVEFRVEPK 550


>gi|330447262|ref|ZP_08310912.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491453|dbj|GAA05409.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 223

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I I++  N   F    +      +  L  +  V     +  +++ G TD+ 
Sbjct: 100 ISVTRDGNNI-ILNMPNEITFGFDQANLNDRAMNALHNVALVAKEYPKTQLNVLGFTDS- 157

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRI 334
             +  A  N RLS  RA +    L++ GV+ +R IS+  G A+     +++   + NRR+
Sbjct: 158 --KGAASYNLRLSQVRADAVGNYLIRQGVNANRVISQGRGEANPIASNSTENGRAQNRRV 215

Query: 335 DILV 338
           +I++
Sbjct: 216 EIIL 219


>gi|254449210|ref|ZP_05062659.1| outer membrane protein [gamma proteobacterium HTCC5015]
 gi|198261187|gb|EDY85483.1| outer membrane protein [gamma proteobacterium HTCC5015]
          Length = 229

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           +     ++ ++S +S          + + ++  K  D     N  +     P+SK+ I  
Sbjct: 18  QAHETGYWSNSSGESVRTGTGDCVKTGQWEEAHKGQDCGMRANDSKRRIPTPVSKKPIDM 77

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            +  KR +   K  +   +      +        +                F   S+   
Sbjct: 78  DEVAKRKKAQEKAAAEQKAEEQKKALDSVRSINLSSG------------AAFSTGSAKLS 125

Query: 246 PETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +    L  +   L         + I GHTD+         N R+S  RA +    L++ 
Sbjct: 126 SKGKESLDDLAMKLKALGNGVKSVQIDGHTDSQ---GSESLNQRVSEQRAQAVKSYLVEQ 182

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           GV    +    G+   +     A+    + NRR++I V+
Sbjct: 183 GVDGS-LINTKGYGESQPVADNATAAGRAQNRRVEISVD 220


>gi|37676733|ref|NP_937129.1| putative protein F-related protein [Vibrio vulnificus YJ016]
 gi|37201276|dbj|BAC97099.1| putative protein F-related protein [Vibrio vulnificus YJ016]
          Length = 193

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227
           K     + P    + ++    + +Q    ++ S +L   +  N ++  +      G  I 
Sbjct: 25  KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 80

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
           I     T  F   S+   P +   +  +G  L       I I GH D++           
Sbjct: 81  IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 136

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           LS  RA    + L+ S V E R+    G+  +    ++  +N    NRR+++++
Sbjct: 137 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 189


>gi|146281895|ref|YP_001172048.1| outer membrane protein [Pseudomonas stutzeri A1501]
 gi|145570100|gb|ABP79206.1| outer membrane protein [Pseudomonas stutzeri A1501]
          Length = 212

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD    +   ++   +Q + + +    +  ++  GHTD+         N RLS  RA + 
Sbjct: 107 FDFDRDVVKQDSYSDIQNLADFMKEYRQTTTVLEGHTDSV---GTDAYNQRLSERRANAV 163

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            +VL+   GV  +R++ + G+   R     +++   + NRR++  VE R
Sbjct: 164 RRVLVDELGVEGNRVNAV-GYGESRPVADNSTEEGRAINRRVEAEVEAR 211


>gi|320158835|ref|YP_004191213.1| protein F-related protein [Vibrio vulnificus MO6-24/O]
 gi|319934147|gb|ADV89010.1| protein F-related protein [Vibrio vulnificus MO6-24/O]
          Length = 200

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227
           K     + P    + ++    + +Q    ++ S +L   +  N ++  +      G  I 
Sbjct: 32  KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 87

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
           I     T  F   S+   P +   +  +G  L       I I GH D++           
Sbjct: 88  IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 143

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           LS  RA    + L+ S V E R+    G+  +    ++  +N    NRR+++++
Sbjct: 144 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 196


>gi|161520471|ref|YP_001583898.1| DotU family type IV/VI secretion system protein [Burkholderia
           multivorans ATCC 17616]
 gi|189353338|ref|YP_001948965.1| putative OmpA/MotB family outer membrane protein [Burkholderia
           multivorans ATCC 17616]
 gi|160344521|gb|ABX17606.1| type IV / VI secretion system protein, DotU family [Burkholderia
           multivorans ATCC 17616]
 gi|189337360|dbj|BAG46429.1| putative OmpA/MotB family outer membrane protein [Burkholderia
           multivorans ATCC 17616]
          Length = 405

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R      LA+ +   L   VA   V+ +            ++  R   MF   +   
Sbjct: 252 EAQRLSPFDALARNLERRLRDEVAAGNVELIRDPARH------VLTLRFAGMFVPGAVTV 305

Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A   E  V+ + G+ D++P  +  +  N  LS  RA    ++L+ 
Sbjct: 306 APWGASVVASAGREIASIAEGMVVRVVGYADSAPAGSARQVSNQALSEARAEDVARILVA 365

Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +GV      ++ G         +  +   + NRR++++V
Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403


>gi|326424248|ref|NP_762484.2| protein F-like protein [Vibrio vulnificus CMCP6]
 gi|319999634|gb|AAO07474.2| Protein F-related protein [Vibrio vulnificus CMCP6]
          Length = 198

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227
           K     + P    + ++    + +Q    ++ S +L   +  N ++  +      G  I 
Sbjct: 30  KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 85

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
           I     T  F   S+   P +   +  +G  L       I I GH D++           
Sbjct: 86  IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 141

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           LS  RA    + L+ S V E R+    G+  +    ++  +N    NRR+++++
Sbjct: 142 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 194


>gi|330995812|ref|ZP_08319709.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574542|gb|EGG56107.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 242

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271
            V   T   G+    +   +  +F+ SSS         L K    + +  +   ++I+G+
Sbjct: 93  QVESVTDANGLQAVKVTFDSGILFNTSSSALSSNATASLAKFASTVLNVNKDMDVAIKGY 152

Query: 272 TDASPFRNIA-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           TD   ++N       + N  LSL RA S    L + GVS  +I+ + G         +  
Sbjct: 153 TDNQGWKNSTAAQSVQKNMDLSLQRANSVSNYLKQCGVSSTQITSVEGLGEADPVADNST 212

Query: 327 MNSA--NRRIDILV 338
                 NRR+++ +
Sbjct: 213 AAGREQNRRVEVYL 226


>gi|197336986|ref|YP_002157822.1| outer membrane protein [Vibrio fischeri MJ11]
 gi|197314238|gb|ACH63687.1| outer membrane protein [Vibrio fischeri MJ11]
          Length = 255

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 15/144 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254
           ++  L  +  ++     L   T   ++      +N  +    F+   S     +  VL K
Sbjct: 118 VNRELDSIDVESTCSEFLISNTSDALV-----NKNAVLARVYFNFDKSTLTKRSEYVLDK 172

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +   +      + + GHTD+   +  +  N+ L L RA   YQ L++ G   ++ S ++ 
Sbjct: 173 LYSKMGEKDIKLKVEGHTDS---KGSSTYNYDLGLKRANIVYQYLVQQGAEPNQFSVVT- 228

Query: 315 FAHHRLKIASDPMNSA--NRRIDI 336
                    +   N    NRR++I
Sbjct: 229 KGEREPIKTNKTANGREKNRRVEI 252


>gi|59713413|ref|YP_206188.1| outer membrane protein [Vibrio fischeri ES114]
 gi|59481661|gb|AAW87300.1| outer membrane protein [Vibrio fischeri ES114]
          Length = 253

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 15/144 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254
           ++  L  +  ++     L   T   ++      +N  +    F+   S     +  VL K
Sbjct: 116 VNRELDSIDVESTCSEFLISNTSDALV-----NKNAVLARVYFNFDKSTLTKRSEYVLDK 170

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +   +      + + GHTD+   +  +  N+ L L RA   YQ L++ G   ++ S ++ 
Sbjct: 171 LYSKMGEKDIKLKVEGHTDS---KGSSTYNYDLGLKRANIVYQYLVQQGAEPNQFSVVT- 226

Query: 315 FAHHRLKIASDPMNSA--NRRIDI 336
                    +   N    NRR++I
Sbjct: 227 KGEREPIKTNKTANGREKNRRVEI 250


>gi|320093629|ref|ZP_08025513.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319979417|gb|EFW10895.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 402

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
            ++ +FD   S    +    L K+  VL  +      + GHTD+         N  LS  
Sbjct: 289 DDSVLFDFGESTVRADAADTLAKLASVLTDAGAPTAHVYGHTDSV---GDDASNQTLSEQ 345

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILV 338
           RA +    L K+G +        GF   +    +       +P    ANRR++I +
Sbjct: 346 RAKAVVDELKKNGATTA--LDWKGFGETQPIAPNTNDDGSDNPAGRQANRRVEIYI 399


>gi|262274869|ref|ZP_06052680.1| outer membrane protein [Grimontia hollisae CIP 101886]
 gi|262221432|gb|EEY72746.1| outer membrane protein [Grimontia hollisae CIP 101886]
          Length = 197

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     L+++ + L       ++I GH  AS   N    N  LS  RA + 
Sbjct: 79  FANDSSALRPSNYAKLEQLADFLNDQRDAHVTIEGH--ASKVGNPDY-NLSLSQRRANAV 135

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
            + L+   G++  R+  I G+      I  D   +   NRR+
Sbjct: 136 ARALINDFGIAPSRVDAI-GYGDTEPLIDEDSEYAHDVNRRV 176


>gi|95929277|ref|ZP_01312021.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95134775|gb|EAT16430.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 217

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                  + + +      +  R G  I  +  R+   FD  S          + ++  +L
Sbjct: 78  MDQQEQAMRNALASVEGVKIDRDG-NILYVTFRSDNQFDVGSFTLRAGAQQDVARLAAIL 136

Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  I + GHTD++        N  LS  RA +   +L+ SGV   RI+ + GF   
Sbjct: 137 TEYHKTTILVAGHTDST---GSEEYNLGLSERRAMAVRNILVASGVISTRITTV-GFGES 192

Query: 319 RLKIASDPM--NSANRRIDILVED 340
                +        NRR+ + +  
Sbjct: 193 APIADNSTEYGRQLNRRVALKITP 216


>gi|171320878|ref|ZP_02909877.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171093863|gb|EDT38995.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 214

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  + ++  S+ G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVVGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L + GV+  R+S   G          A+D   + NRR++I +   Q
Sbjct: 165 VNALGQRGVAGGRLSA-QGMGASNPIADNATDAGRAQNRRVEIYLRAPQ 212


>gi|89900364|ref|YP_522835.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89345101|gb|ABD69304.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 212

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+    + A  N +LS+ R+ +
Sbjct: 106 FFDFDKSVLKPEGKAKLDDLVGKVKDINLEVIIAVGHTDS--VGSNAY-NQKLSVRRSEA 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+ ++R+    G    +    +      + NRR++I +V  R+
Sbjct: 163 VKAYLVSKGIEKNRVY-TEGKGELQPVADNKTKEGRAKNRRVEIEVVGTRK 212


>gi|332668302|ref|YP_004451090.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM
            1100]
 gi|332337116|gb|AEE54217.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 1170

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 27/216 (12%)

Query: 139  QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL--QDLA 196
            Q E    +LT+     +D  K       +           S  + L   +K  L    L 
Sbjct: 965  QPEAMSIALTKKYGVSEDEVKDGLAAVQVKGGSGTLTYAWSNGETLPTAQKLGLGRNTLV 1024

Query: 197  KKISSTLSGLVADNIVKGVLFETT----RTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
               +   +  +   I K  + E T    R G  I I   +    FD  S       I +L
Sbjct: 1025 VTDAKGCTATIGVEITKKNIPELTAGRIRNGQAIRIEQLQ----FDVDSINIKSSFIPIL 1080

Query: 253  QKIGEVLAHSTEVI-SIRGHT-----DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
             ++ E L  +  +I  + GHT     D    R        LS  RA S  + L+K G+  
Sbjct: 1081 DEVFEFLTDNPGIIVEVGGHTNGLCQDEFCIR--------LSTARAKSVAEYLIKKGIDA 1132

Query: 307  DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             R+ +  G+        +        N+R++I +  
Sbjct: 1133 KRV-QFKGYGRSVPIATNSTPEGRQKNQRVEIKIVR 1167


>gi|327480138|gb|AEA83448.1| outer membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 200

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD    +   ++   +Q + + +    +  ++  GHTD+         N RLS  RA + 
Sbjct: 95  FDFDRDVVKQDSYSDIQNLADFMKEYRQTTTVLEGHTDSV---GTDAYNQRLSERRANAV 151

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
            +VL+   GV  +R++ + G+   R     +++   + NRR++  VE R
Sbjct: 152 RRVLVDELGVEGNRVNAV-GYGESRPVADNSTEEGRAINRRVEAEVEAR 199


>gi|83717470|ref|YP_438322.1| hypothetical protein BTH_II0120 [Burkholderia thailandensis E264]
 gi|257141351|ref|ZP_05589613.1| hypothetical protein BthaA_19409 [Burkholderia thailandensis E264]
 gi|83651295|gb|ABC35359.1| unnamed protein product; Similar to putative exported protein
           [Burkholderia thailandensis E264]
          Length = 558

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    +   P      +   +  +LA+  + + I GH+D+         N +LS  RA 
Sbjct: 441 LFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 497

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +     +  GV + R   + G         +      + NRR++IL+  
Sbjct: 498 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRAQNRRVEILLIP 545


>gi|332852270|ref|ZP_08434075.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013150]
 gi|332870493|ref|ZP_08439257.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013113]
 gi|332729400|gb|EGJ60740.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013150]
 gi|332732230|gb|EGJ63498.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013113]
          Length = 353

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 343

Query: 342 Q 342
           Q
Sbjct: 344 Q 344


>gi|255008683|ref|ZP_05280809.1| OmpA family membrane protein [Bacteroides fragilis 3_1_12]
 gi|313146419|ref|ZP_07808612.1| outer membrane protein [Bacteroides fragilis 3_1_12]
 gi|313135186|gb|EFR52546.1| outer membrane protein [Bacteroides fragilis 3_1_12]
          Length = 224

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS     +   L +   +L       ++I GHTD          N ++S +RAY+
Sbjct: 112 LFAFNSSALSAASKQSLAEFANILKEDPTVDVAIIGHTDKV---GTYEANQKVSSNRAYA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               L   GV   +  K+ G  + +   A  P    NRR++I 
Sbjct: 169 VENYLQSCGVKPYQFKKVEGVGYSQYNEAETPE--QNRRVEIF 209


>gi|163784521|ref|ZP_02179383.1| OmpA domain protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880207|gb|EDP73849.1| OmpA domain protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 75

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I GHTD +      + N  LSL RA    ++ +  G S D +  + G+   R    +   
Sbjct: 2   IEGHTDNT---GSYKLNLDLSLKRALYIMKMFISCGFSPD-LLSVRGYGPSRPIADNSTP 57

Query: 327 -MNSANRRIDILVEDRQ 342
              + NRR++ +++ ++
Sbjct: 58  KGRAKNRRVEFVIKTKE 74


>gi|99080684|ref|YP_612838.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99036964|gb|ABF63576.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 1619

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVI-SIRGHTDASPFRNIARDNWRLSLDRAY 293
           F    +      + VL++  + L    +   +  I GHTD++      + N  LS  RA 
Sbjct: 467 FATGKADIREAGLGVLREAADALKARGAENYVFLIEGHTDST---GSDKINLPLSDARAK 523

Query: 294 SA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           S     +  +G++ +R+  + G+        +        NRR++I
Sbjct: 524 SVERYFVENAGIAPERLQTV-GYGPRIPLATNATEGGKQINRRVEI 568


>gi|170699332|ref|ZP_02890380.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170135762|gb|EDT04042.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 219

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++        L K+   L    +     + + G+TDA+        N  LS  RA
Sbjct: 117 FATDSAVLTSAATAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDGHNQALSKRRA 170

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D     +G        ++D     + NRR++I ++
Sbjct: 171 DAVAGYLREHGLKAD-AFAATGHGEANPAASNDTVEGRARNRRVEISLQ 218


>gi|37679728|ref|NP_934337.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|37198473|dbj|BAC94308.1| outer membrane protein [Vibrio vulnificus YJ016]
          Length = 226

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+   +     A  N  LS  RA
Sbjct: 101 RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 157

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            +  ++L+  G+++ R+ +I GF    L      +  ++ NRR+
Sbjct: 158 NNVREMLIGYGIAQSRV-RIVGFGDSALANEGTDEVSHALNRRV 200


>gi|258405280|ref|YP_003198022.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797507|gb|ACV68444.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 322

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
           AD  V+      T T   + + D+ +  M  F    +    +    L +   +L  + + 
Sbjct: 176 ADKEVETRTVYVTNTDTPLPMADKDDVGMIFFQFDKASIQDQYTDELDEYVALLRRNPQM 235

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + I GHTD        + N  LSL RA + +   ++  +S +R+ +  G+  ++    +
Sbjct: 236 ELLIEGHTD---IIGSEKYNLDLSLQRAMAVHDYFVRHNISSERL-RTKGYGFNKPIAPN 291

Query: 325 -------DPM-NSANRRIDI 336
                  +P   + NRR+++
Sbjct: 292 FTQNRKDNPEGRANNRRVEL 311


>gi|218675305|ref|ZP_03524974.1| hypothetical conserved membrane protein [Rhizobium etli GR56]
          Length = 206

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   PE   +LQK+  V+       I I GHTDA      AR N  LS  RA
Sbjct: 102 RVQFAFDSSAIAPEQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSTLRA 158

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               +       +  +R+  + G           P    NRR++
Sbjct: 159 REVARFFTEDCHIPRERLEAV-GVGEQFPLDPQTPKADENRRVE 201


>gi|167614763|ref|ZP_02383398.1| unnamed protein product; Similar to putative exported protein
           [Burkholderia thailandensis Bt4]
          Length = 560

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    +   P      +   +  +LA+  + + I GH+D+         N +LS  RA 
Sbjct: 443 LFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 499

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +     +  GV + R   + G         +      + NRR++IL+  
Sbjct: 500 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRAQNRRVEILLIP 547


>gi|34497346|ref|NP_901561.1| outer membrane protein [Chromobacterium violaceum ATCC 12472]
 gi|34103202|gb|AAQ59565.1| probable outer membrane protein [Chromobacterium violaceum ATCC
           12472]
          Length = 223

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           ++ +      +       G+    T    + I+I    +   FD +S    P    VL K
Sbjct: 77  SQHMQKQKEAMEQATKGTGIGVSQTADNRLKINI---PSDASFDTNSYALKPSLKPVLDK 133

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L  +    ++I GHTD +    I      LS++RA +    L   GV  +RI  I 
Sbjct: 134 LATTLQQNPVTSVNIIGHTDNTGSDAINNP---LSVNRAKATQGYLASRGVDINRIG-ID 189

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G         +      + NRR++I V
Sbjct: 190 GRGSREPVADNGTVSGRAMNRRVEIYV 216


>gi|330447679|ref|ZP_08311327.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491870|dbj|GAA05824.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 508

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 227 SIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
            I   +  P +F   S          L++  E L H  +  I + GHT     R     N
Sbjct: 388 EIGTLKTRPVIFSSGSDQLTANGKQQLRQTAESLTHYPKFRILVEGHT---GLRGDKALN 444

Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA---NR--RIDILV 338
            +LS  RA +    L+   G    RI  I G             +     NR  R++I +
Sbjct: 445 EQLSAQRAKAVKHYLVNELGFEARRIHAI-GKGSKEPLERLSGESQRRYANRLMRVEIAL 503

Query: 339 ED 340
             
Sbjct: 504 LS 505


>gi|115359322|ref|YP_776460.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115284610|gb|ABI90126.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 224

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  ++     +F    +   P     L K+       T   +++ GHTD+         N
Sbjct: 111 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVTGHTDSV---GNDAAN 167

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L   G++   +  +SG        ++      ++NRR+DI ++ 
Sbjct: 168 LALSKRRAETVAGYLKAHGLNAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 224


>gi|169794817|ref|YP_001712610.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter baumannii AYE]
 gi|213157857|ref|YP_002320655.1| outer membrane protein A [Acinetobacter baumannii AB0057]
 gi|215482363|ref|YP_002324545.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB307-0294]
 gi|301345435|ref|ZP_07226176.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB056]
 gi|301512590|ref|ZP_07237827.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB058]
 gi|301595016|ref|ZP_07240024.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB059]
 gi|169147744|emb|CAM85607.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter baumannii AYE]
 gi|213057017|gb|ACJ41919.1| outer membrane protein A [Acinetobacter baumannii AB0057]
 gi|213988159|gb|ACJ58458.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter
           baumannii AB307-0294]
          Length = 353

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 343

Query: 342 Q 342
           Q
Sbjct: 344 Q 344


>gi|149190419|ref|ZP_01868691.1| outer membrane protein A [Vibrio shilonii AK1]
 gi|148835798|gb|EDL52763.1| outer membrane protein A [Vibrio shilonii AK1]
          Length = 343

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282
           I   + +  ++ +F   S     E +  L  I   L    E   ++ G+TD++       
Sbjct: 220 ITTRLPEVHSSVLFAFDSEKI--ENVEALNPIVYRLTRYPETRATVYGYTDST---GPNE 274

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            N  LS  RA + Y+ L  +GVS +++ +++G+      + +D       NRR+ + +E+
Sbjct: 275 YNQSLSERRANAVYEYLKHAGVSTEQL-RVAGYGEDSPVVPNDTTEHRHMNRRVTVHIEE 333


>gi|15639612|ref|NP_219062.1| hypothetical protein TP0624 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025850|ref|YP_001933622.1| hypothetical protein TPASS_0624 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322920|gb|AAC65597.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018425|gb|ACD71043.1| hypothetical protein TPASS_0624 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059994|gb|ADD72729.1| OmpA family protein [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 476

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-- 263
            + D    GV   +    + I++ D R    F  +S   L      +  I   L      
Sbjct: 345 FLTDERSPGVGVRSGINTLKITVYDVR----FVANSPEILASEKDRVDVIATALKKMGPY 400

Query: 264 EVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I GHT     P    A     LS+ RA    Q L + G+   RI+  +G    +  
Sbjct: 401 TRFLIEGHTADLHRPQEEAA-----LSVARAQRMAQELSRRGIEMTRIT-TAGHGATKPI 454

Query: 322 IASDPMN--SANRRIDILVED 340
             SD     + NRR++I +  
Sbjct: 455 APSDTHANKAKNRRVEITILR 475


>gi|83941258|ref|ZP_00953720.1| OmpA family protein [Sulfitobacter sp. EE-36]
 gi|83847078|gb|EAP84953.1| OmpA family protein [Sulfitobacter sp. EE-36]
          Length = 191

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F+  S    P+    L +  +     + +IS  GHTD+   R     N +LSL+RA + 
Sbjct: 93  FFNTDSYRVHPQGRARLAEFFKTTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANAV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             +  +SG    RI+ + G+       ++      + NRR++I+
Sbjct: 148 ASIAQQSG---ARIADVRGYGERMPAASNGTAGGMAKNRRVEII 188


>gi|222102518|ref|YP_002539557.1| OmpA family protein [Agrobacterium vitis S4]
 gi|221739119|gb|ACM39852.1| OmpA family protein [Agrobacterium vitis S4]
          Length = 332

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    E+   L ++ E L    +  + I GHTD+         N  LS  RA + 
Sbjct: 230 FETDSAALKAESDKTLAQMAEFLTQDVSRKVYIVGHTDS---SGALERNMNLSQARAAAV 286

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
            + L    G+  DR+ +  G   +      A+D   + NRR++++
Sbjct: 287 VKALTAKFGIDSDRL-QPKGIGPYAPAASNANDAGRAKNRRVEMV 330


>gi|91215766|ref|ZP_01252736.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
 gi|91186232|gb|EAS72605.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
          Length = 231

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPLPETIV 250
           +   AK+I   + G            E TR G  I++  D+ +   F  + S    ++ +
Sbjct: 81  MDKQAKEIEEEIPGA-----------EVTRVGEGINVTFDENSGVYFTTNKSNIEGKSEI 129

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L K+  +     +  I + GHTD++        N  LS  RA S    L  +G+S  RI
Sbjct: 130 SLLKLIGIFQKYPKTNIIVEGHTDST---GSDSYNMDLSKRRAQSVTDYLSNNGISSSRI 186

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILV 338
            K + +   + K  +      S NRR+++ +
Sbjct: 187 -KTNWYGEEQPKFDNTSPEERSKNRRVELAI 216


>gi|115358236|ref|YP_775374.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115283524|gb|ABI89040.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 404

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R   L  LA+ +   L   VA   V+ +    +        +  R   +F    +  
Sbjct: 251 ETRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDA------LTLRFGGLFAPGDAAV 304

Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A  T    + + G+ D++  R+     N  LS  RA    Q+L+ 
Sbjct: 305 APWGASVVASAGREIAVLTGSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364

Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340
           +GVS  RIS + +G A       +    + NRR+++ + D
Sbjct: 365 AGVSAPRISVEGNGEADSLADNGTAAGRARNRRVEVTITD 404


>gi|197337755|ref|YP_002158384.1| OmpA family protein [Vibrio fischeri MJ11]
 gi|197315007|gb|ACH64456.1| OmpA family protein [Vibrio fischeri MJ11]
          Length = 1600

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 30/225 (13%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           ++  + + ++    +       +       + L  S ++ +   +P  S+E I   +++ 
Sbjct: 541 VYGFNEAVKANDNADKAYAKLFETTQKYSLSTLSVSNDRLQEAAIPRDSEEAI--KEQQN 598

Query: 191 RLQDLAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
                   + + L+ LV  +    V     +   + +      +  MFD  S    P+  
Sbjct: 599 AYDQAVDSMRAKLAQLVVKDQKHHVETVGFSEFQLRL------DATMFDFDSHEIQPDFS 652

Query: 250 VV---LQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                 Q I E L     +  VI I GHT +    + A  N  LS  RA +    ++ + 
Sbjct: 653 GASTPFQSIAEELKKLSGAPFVIMIIGHTCS--IGSEAY-NLELSKQRAVAVKNSIIDA- 708

Query: 304 VSEDR-------ISKISGFAHHRLKIASD----PMNSANRRIDIL 337
           +S+++       +  + G         ++         NRR++I+
Sbjct: 709 LSDEKYKSIWSDLLVVKGEGESTPLPGNNNETEEERKLNRRVEIV 753


>gi|163866828|gb|ABY47584.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 333

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328


>gi|126461330|ref|YP_001042444.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102994|gb|ABN75672.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 213

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE    L++  + +         + GHTD          N RL L RA + 
Sbjct: 69  FPFDSAALTPEAQATLRRQADWIRQFPEVRFRVYGHTD---LVGSEAYNKRLGLRRAKAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  +   R  I        NRR
Sbjct: 126 VAYLASQGISPARLEALVSYGETRPVIPVAAPEERNRR 163


>gi|241764514|ref|ZP_04762534.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241366050|gb|EER60654.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 212

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+         N +LS+ R+ +
Sbjct: 104 FFDFDKSVLKPEGKAKLDDLVSKVKDINLEVIIAVGHTDSV---GTDAYNQKLSVRRSEA 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 161 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 205


>gi|327189144|gb|EGE56328.1| hypothetical protein RHECNPAF_7150015 [Rhizobium etli CNPAF512]
          Length = 429

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             LPP    +   +    ++   + ++ + L   + + +   V        I++ I   R
Sbjct: 264 ATLPPNGVVRSARIALPPKVVMSSDRLRNFLEPEIREGL---VTVSEDPQQIVVII---R 317

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
            + MFD +S       + +L +IG  L   +  + + GHTDA P +++A  +        
Sbjct: 318 ASGMFDSASPEVKKMFLPLLLRIGRSLNGESGSVLLTGHTDAIPVQSLAFPSNDSLSLAR 377

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            SA   ++KS +++    +  G        ++      + NRRI I++   Q
Sbjct: 378 ASAAAEIIKSMMNDPGRVREEGRGSGEPVASNHTPEGRARNRRIQIIITKTQ 429


>gi|70728526|ref|YP_258275.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68342825|gb|AAY90431.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 262

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 15/237 (6%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG---KDLCKSTDLEKS 166
           S        N +  +  L+ N      +             ++K    KD  K  D    
Sbjct: 21  STPPNANLENARTNFSALQANPQASKVAALETKDAADWMDKADKAYLNKDDEKKVDQLAY 80

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           +  +           +    K K      A+ I       +   +   +  + T  G L+
Sbjct: 81  LTNQRVEVAKETIALRTAEAKLKDAGDQRARAILDARDAQIKQ-LQDSLNAKQTDRGTLV 139

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           +  D     +F  + S      +V + K+ + L  + +  + + G+TD++        N 
Sbjct: 140 TFGD----VLFATNKSDLKSSGLVNINKLAQFLQQNPDRKVIVEGYTDST---GSDSYNQ 192

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
            LS  RA S    L++ G+   RI    G+        +      + NRR+++ + +
Sbjct: 193 SLSERRAGSVQMALIRMGIDPARIVS-QGYGKEYPVADNGSVSGRAMNRRVEVTISN 248


>gi|302189107|ref|ZP_07265780.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 229

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 95  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++    
Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVN 209

Query: 327 MNSANRRIDILVEDRQG 343
             + NRR+++ ++   G
Sbjct: 210 GRAQNRRVEVNLKPIPG 226


>gi|256828886|ref|YP_003157614.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578062|gb|ACU89198.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 375

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            +S  K+   I    T   V L+      +    R    I         E         +
Sbjct: 100 GASIAKVPTLIGSDPTPLGVALQALEPTLQGASGRNAVIIVSDGRENAGEDSLKVAAALA 159

Query: 152 EKGKDLCKSTDLEKSINKEEN------YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           EK      +     S+N  +          P         +     +Q   + +   ++G
Sbjct: 160 EKYNVCFHTVSFADSVNGNQPLLDSITALKPCGVGVSAAQLADDAAMQKFVRDVFYDVAG 219

Query: 206 ------LVADNIVKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIV 250
                 L  D        +     I+   +D    P+         FD   S   P    
Sbjct: 220 GVDPCSLDDDGDGVNNCVDKCPDTIMGLAVDADGCPIPEVIRLKVNFDFDKSDIKPAYHQ 279

Query: 251 VLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
            L      +       V+ I GHTD+   +     N +LS  RA +    L+ + G+   
Sbjct: 280 ELADFAAYMKQQQSFTVVEIAGHTDS---KGADEYNQKLSERRAKAVRDYLVTNFGLDGS 336

Query: 308 RISKISGFAHHRLKIASDPM--NSANRRID 335
            +    G+   +   ++D     + NRR++
Sbjct: 337 -LFSARGYGESKPVASNDTEEGRAENRRME 365


>gi|323140666|ref|ZP_08075588.1| hypothetical protein HMPREF9443_00346 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414851|gb|EFY05648.1| hypothetical protein HMPREF9443_00346 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 244

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 43/203 (21%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           LS + +     K    D + +  + L+ +  +   +G++ E  +T  ++ + D+     F
Sbjct: 34  LSWQILTYTNMKSDFADKSYERVALLNEIHKELNNRGIMVEINKTHDVLRLHDKALK--F 91

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV--------------ISIRGHTDA-SP-FRNIA 281
               + P       +Q+I EVL                    I I GHTD+  P FR+  
Sbjct: 92  LPGRAKPEA-GEENVQQISEVLYTVLNKDRGDKPKYKELVETIFIEGHTDSDLPSFRSDY 150

Query: 282 RDNWRLSLDRAYSAYQVLMK----------------SGVSEDRISKISGFAHHRLKIASD 325
            DNW LS  RA   ++++                  +G     I   SG+A  R  + ++
Sbjct: 151 PDNWMLSTARAVRTWEMMSAFRPDGATQTLGEIKNHNGFP---IFSCSGYADTRRIVENE 207

Query: 326 P---MNSANRRIDI--LVEDRQG 343
                 S NRRIDI  ++   +G
Sbjct: 208 TSKEEKSINRRIDIRFVMVPPKG 230


>gi|83950067|ref|ZP_00958800.1| OmpA family protein [Roseovarius nubinhibens ISM]
 gi|83837966|gb|EAP77262.1| OmpA family protein [Roseovarius nubinhibens ISM]
          Length = 220

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         L++    +         + GHTD          N  L + RA + 
Sbjct: 75  FAFNSAQLDAGARDTLREQAHWIRQFPEVRFRVYGHTDKVGSHGY---NKALGMARARAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  ++ F   +  I ++     NRR
Sbjct: 132 VAYLASQGISTSRLEAVASFGETQPLIVTEGRERRNRR 169


>gi|71064914|ref|YP_263641.1| outer membrane protein [Psychrobacter arcticus 273-4]
 gi|71037899|gb|AAZ18207.1| probable outer membrane protein [Psychrobacter arcticus 273-4]
          Length = 394

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 226 ISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           + I D+        FD   S    +    + K+ E +         + GH  AS     A
Sbjct: 261 VDITDELKMELRVFFDNDKSAIKTQYKPEIAKVAEKMREYPNSTARVEGH--ASKTGPSA 318

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           R N RLS  RA +   +L    G++ +R+S + G+ + +    ++     + NRR+
Sbjct: 319 RYNQRLSEARAVAVKSMLTNEFGIAPNRLSTV-GYGYDQPIADNNTEEGRAMNRRV 373


>gi|27382457|ref|NP_773986.1| hypothetical protein blr7346 [Bradyrhizobium japonicum USDA 110]
 gi|27355628|dbj|BAC52611.1| blr7346 [Bradyrhizobium japonicum USDA 110]
          Length = 316

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  PE+   L++I ++L       + I GHTD+         N  LS  RA + 
Sbjct: 214 FDTDKAVLKPESRPTLEQIAKLLTSQPQLNVFIVGHTDSQ---GAYEYNLDLSKRRAEAV 270

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L KS        + +G          A+D   + NRR++++
Sbjct: 271 AAELAKSFRIAQARLRTAGVGLLAPVGSNATDAGRALNRRVELV 314


>gi|325068010|ref|ZP_08126683.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 411

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         LQ +   L        ++I GHTD          N  LS  RA +
Sbjct: 117 FASDSADLASGAETQLQTVVGQLGQYPDGGTLTIVGHTDDVQ---DDAYNQTLSEKRANA 173

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
               L +    +   + +SG    + KI    D   +ANRR++I +    G
Sbjct: 174 VKTRLEQLTKLDKWQTSVSGKGESQPKINDTTDQARAANRRVEITLTPTSG 224


>gi|171911103|ref|ZP_02926573.1| outer membrane protein [Verrucomicrobium spinosum DSM 4136]
          Length = 479

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   ++  P     L  +  +L  S    + I GHTDA   +   + N  LS  RA + 
Sbjct: 371 FEYDQAVLHPRAQAQLNIVASILKASPSKNLKIGGHTDA---KGSDQYNVALSQRRAAAV 427

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVE 339
            Q  +  GV   ++  + GF        +       +P   S NRR +IL++
Sbjct: 428 KQYFLDQGVPPLQVETV-GFGKALPLSPNANPDGSDNPEGRSRNRRAEILLD 478


>gi|157960752|ref|YP_001500786.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157845752|gb|ABV86251.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 356

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD  SS         L  + E L      I +I+G+TD++     A  N  LS  RA
Sbjct: 244 TSLFDFDSSELTN--SDSLTAVIERLNQVPTAIANIKGYTDST---GAAAYNQALSERRA 298

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            +    L+ +G+  ++I  + GF      + +D       NRR+ I ++ 
Sbjct: 299 QAVADDLIAAGIKPEQIE-VHGFGEQFPVMKNDTSEHRHENRRVLIHIQS 347


>gi|53713187|ref|YP_099179.1| OmpA family outer membrane protein [Bacteroides fragilis YCH46]
 gi|60681448|ref|YP_211592.1| OmpA family membrane protein [Bacteroides fragilis NCTC 9343]
 gi|253566855|ref|ZP_04844307.1| OmpA family outer membrane protein [Bacteroides sp. 3_2_5]
 gi|265763283|ref|ZP_06091851.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_16]
 gi|52216052|dbj|BAD48645.1| OmpA family outer membrane protein [Bacteroides fragilis YCH46]
 gi|60492882|emb|CAH07657.1| putative outer membrane protein OmpA-family [Bacteroides fragilis
           NCTC 9343]
 gi|251944418|gb|EES84907.1| OmpA family outer membrane protein [Bacteroides sp. 3_2_5]
 gi|263255891|gb|EEZ27237.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_16]
 gi|301162908|emb|CBW22455.1| putative outer membrane protein OmpA-family [Bacteroides fragilis
           638R]
          Length = 224

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS     +   L +   +L       ++I GHTD          N ++S +RAY+
Sbjct: 112 LFAFNSSALSAASKQSLAEFANILKEDPTVDVAIIGHTDKV---GSYEANQKVSANRAYA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               L   GV   +  K+ G  + +   +  P    NRR++I 
Sbjct: 169 VENYLQACGVKPYQFKKVEGVGYSQYNESETPE--QNRRVEIF 209


>gi|319779310|ref|YP_004130223.1| Outer membrane protein A precursor [Taylorella equigenitalis MCE9]
 gi|317109334|gb|ADU92080.1| Outer membrane protein A precursor [Taylorella equigenitalis MCE9]
          Length = 188

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   VL +I E +   T    I  GHTD+      A  N +LS  RA +
Sbjct: 82  FFDFDKSSLKPEGRTVLDQIAEQVKLLTLESLITVGHTDS--IGTNAY-NQKLSERRAAT 138

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
               L+  GV  ++I   SG    +    +      + NRR+DI
Sbjct: 139 VKNYLIDKGVPAEQIIA-SGRGETQPIADNRTREGRAQNRRVDI 181


>gi|107100572|ref|ZP_01364490.1| hypothetical protein PaerPA_01001597 [Pseudomonas aeruginosa PACS2]
 gi|313106086|ref|ZP_07792343.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|310878845|gb|EFQ37439.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 158

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L     + + + GHTD   + +    N +LS  RA
Sbjct: 52  KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 108

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    +    +      S NRR+ I+V
Sbjct: 109 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 155


>gi|114778503|ref|ZP_01453347.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1]
 gi|114551228|gb|EAU53787.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1]
          Length = 325

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + + +L       +   +     K +    T+ G  I++        FD  S I   ++ 
Sbjct: 181 RTMAELNVVEVEPMQQEMVFIKAKDLANGITQQG-HIALHQIH----FDTDSDIIKADSR 235

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307
             + +I  +L ++ +  I + GHTD        + N  LS  RA +    L    G+   
Sbjct: 236 PAIDQIALMLKNNPDLKIILVGHTDNQ---GDLQYNMDLSQRRAKAVMNSLESDYGIKRA 292

Query: 308 RISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           R+     G+        S    + NRR++I+
Sbjct: 293 RLGAAGIGYLAPIASNRSAEGRAENRRVEII 323


>gi|77462452|ref|YP_351956.1| OmpA/MotB family outer membrane protein [Rhodobacter sphaeroides
           2.4.1]
 gi|221638315|ref|YP_002524577.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|332560336|ref|ZP_08414658.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
 gi|77386870|gb|ABA78055.1| outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides
           2.4.1]
 gi|221159096|gb|ACM00076.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
 gi|332278048|gb|EGJ23363.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
          Length = 213

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE    L++  + +         + GHTD          N RL L RA + 
Sbjct: 69  FPFDSAALTPEAQATLRRQADWIRQFPEVRFRVYGHTD---LVGSEAYNKRLGLRRAKAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  +   R  I        NRR
Sbjct: 126 VAYLASQGISPARLEALVSYGETRPVIPVAAPEERNRR 163


>gi|320325748|gb|EFW81809.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327336|gb|EFW83350.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330881603|gb|EGH15752.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 229

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++      + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|312959441|ref|ZP_07773958.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311286158|gb|EFQ64722.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 231

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         L  I   L     +  + + GHTD+         N +LS  RA+S
Sbjct: 127 FQFDSANLTTADKTTLDTIAARLKQEAPSAQLRVSGHTDSV---GADAYNQKLSQKRAHS 183

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             + L+  GV       + G    +      +    + NRR  I +
Sbjct: 184 VTEYLISRGVPRSSFVSVVGAGESQPVADNKTAEGRALNRRTQIQI 229


>gi|167585789|ref|ZP_02378177.1| ompA family protein [Burkholderia ubonensis Bu]
          Length = 166

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  +     S+ G+TD++    +   N  LS +RA S 
Sbjct: 61  FATNQYAITPAFTPLLNDLATTLNQNPQVTASVVGYTDSTGSAGL---NQTLSQNRAQSV 117

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L + GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 118 VNALTQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQ 165


>gi|163866830|gb|ABY47585.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 341

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328


>gi|129307156|gb|ABO30516.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 337

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328


>gi|114048539|ref|YP_739089.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113889981|gb|ABI44032.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 372

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            +   +  F   S++   E    ++++   L  + E  + I GH            N  L
Sbjct: 253 QEDVGSIQFANDSAVVKKEYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPDYNMTL 309

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342
           S  RA +  ++L++  G+S+ R++  +G+   +  +A D   +  ANRRI+ +V   +
Sbjct: 310 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDTKEAHAANRRIEAIVTTTE 366


>gi|127511841|ref|YP_001093038.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126637136|gb|ABO22779.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 224

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++      TR G  I I++  N   F    S+       VL  +  V     E ++++ G
Sbjct: 94  LQSTGVSVTRNGDNI-ILNMPNEVTFGVDQSVLSSRAKNVLDSVALVAKEYDETMLNVMG 152

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD+         N RLS  RA      LM   +   RIS + G    R    +      
Sbjct: 153 FTDS---SGSESYNLRLSQVRAAEVANYLMSREIKSQRISSV-GMGESRPIADNSTQQGR 208

Query: 329 SANRRIDILV 338
           + NRR++I++
Sbjct: 209 AQNRRVEIVL 218


>gi|227538856|ref|ZP_03968905.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241365|gb|EEI91380.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 230

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   A +I +T++G              +  GI   I+      +FD + S       
Sbjct: 80  KKMDKQAAEIENTVAGA---------EVIKSDEGI---IVKFDEGILFDFNKSDLKASAK 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             + K+   L    +  I + GHTD          N ++S  RA +     +  G++  R
Sbjct: 128 TNISKLVATLNKEPDTKILVIGHTDNV---GSLAANQKVSEARAAAVKTYAVSQGLNGGR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I+   G  +     ++D     + NRR++I++
Sbjct: 185 IN-TEGKNYSEPLASNDTDAGRAENRRVEIVI 215


>gi|221068229|ref|ZP_03544334.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220713252|gb|EED68620.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 215

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  P     L  +   +      + I  GHTD+    + A  N +LS+ RA +
Sbjct: 107 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDS--IGSDAY-NQKLSVRRAEA 163

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
               L+  G+ + R+    G    +     A+    + NRR++I V   + 
Sbjct: 164 VKAYLVSKGIEKSRVY-TEGKGKKQPVASNATAAGRAQNRRVEIEVVGTKA 213


>gi|238752234|ref|ZP_04613714.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia rohdei ATCC 43380]
 gi|238709502|gb|EEQ01740.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia rohdei ATCC 43380]
          Length = 153

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD             ++ IG  L +     + + GHTD++        N +LS  R
Sbjct: 47  NKVLFDTDIRELNSTGKQTVESIGRALHNVGINHLRVDGHTDST---GEDGYNQQLSYQR 103

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L  SG+   RI  + G         +      + NRR+ I+V
Sbjct: 104 AAAVADSLSASGIPRARID-VRGRGELEPAADNKTAQGRAENRRVAIIV 151


>gi|91786221|ref|YP_547173.1| Type I secretion outer membrane protein TolC [Polaromonas sp.
           JS666]
 gi|91695446|gb|ABE42275.1| Type I secretion outer membrane protein, TolC [Polaromonas sp.
           JS666]
          Length = 607

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   S         L  + + L      + I  GHTD+         N RLSL RA S
Sbjct: 498 LFDFDKSTIKAGGTGKLDALVDRLKGVNVDVVIAVGHTDSV---GTDAYNQRLSLARADS 554

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQG 343
               L+  GV   RI +  G    +     A+    + NRR+DI +VE R  
Sbjct: 555 VKAYLVSKGVDRQRI-RTEGRGESQPVADNATAEGRAKNRRVDIEVVEARPA 605


>gi|119773835|ref|YP_926575.1| outer membrane protein and related peptidoglycan-associated
           (LipO)protein [Shewanella amazonensis SB2B]
 gi|119766335|gb|ABL98905.1| outer membrane protein and related peptidoglycan-associated
           (LipO)protein [Shewanella amazonensis SB2B]
          Length = 484

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD  S   LPE+  VL+ +   L  +      + GHTD          N  LS  R
Sbjct: 374 DGLLFDYDSDRMLPESKPVLEVLASYLKQNPALNFYVVGHTDDQ---GDKAYNLSLSERR 430

Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           A +  + L     +   ++    G          A++   S NRR+++++  
Sbjct: 431 AAAVVKALGADYQIKPAQLEA-HGMGEFSPVASNANEAGQSQNRRVELVLRS 481


>gi|170702768|ref|ZP_02893624.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132317|gb|EDT00789.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 222

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  ++     +F    +   P     L K+       T   +++ GHTD+         N
Sbjct: 109 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVTGHTDSV---GNDAAN 165

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L   G+    +  +SG        ++      ++NRR+DI ++ 
Sbjct: 166 LALSKRRAETVAGYLKAHGLKAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 222


>gi|85858730|ref|YP_460932.1| outer membrane porin protein [Syntrophus aciditrophicus SB]
 gi|85721821|gb|ABC76764.1| outer membrane porin protein [Syntrophus aciditrophicus SB]
          Length = 435

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        P+    +QK+ + +  + +V   + GHTD++   + A  N +LS +RA +
Sbjct: 332 LFASDKYNIEPKYDSEIQKVADYMKANPDVTAVVAGHTDST--HSNAY-NKKLSQNRANA 388

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
               L++  G+   RI  + G+   +    +        NRR+ ++
Sbjct: 389 VKTALVEKYGIDASRIEAV-GYGEDKPIATNKTKAGRQKNRRVVVM 433


>gi|78060486|ref|YP_367061.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77965036|gb|ABB06417.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 220

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++        L  +   L    +     + + G+TDA+        N  LS  RA
Sbjct: 118 FATDSAVLTSAATAALDTL---LNQQGDKHFSRVEVDGYTDAT---GSDAHNQVLSKRRA 171

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  +  +  +G        +++     + NRR++I ++
Sbjct: 172 DAVAGYLREHGLKAESFAA-TGHGETNPAASNETAEGRARNRRVEISLQ 219


>gi|293611044|ref|ZP_06693343.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826696|gb|EFF85062.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 357

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +      + N RLSL RA
Sbjct: 238 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 294

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 295 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 353

Query: 342 Q 342
           Q
Sbjct: 354 Q 354


>gi|262369227|ref|ZP_06062555.1| outer membrane protein A [Acinetobacter johnsonii SH046]
 gi|262315295|gb|EEY96334.1| outer membrane protein A [Acinetobacter johnsonii SH046]
          Length = 348

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +  R +   N RLSL RA
Sbjct: 235 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 291

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    ++     + NRR+
Sbjct: 292 NSVKSSLVNEYNVDPARL-STQGFAWDQPIADNNTKEGRAMNRRV 335


>gi|260768688|ref|ZP_05877622.1| outer membrane protein [Vibrio furnissii CIP 102972]
 gi|260616718|gb|EEX41903.1| outer membrane protein [Vibrio furnissii CIP 102972]
          Length = 229

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C  +  +++  G+    S      +       +   S +     +++  +        
Sbjct: 22  SGCAATQRQNATTGETETNSATKGALLGALAGAAVGLASGDDAKERRQRALIGAAGGAAV 81

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253
               G   D     +  E   +G+ +  + +    +       F  +S          L+
Sbjct: 82  GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLVLRMQNGIGFQTNSYQLDSSIHNTLR 141

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + ++L    +  + I GHTD++        N  LS  RA S    L+  GV+  R    
Sbjct: 142 GVAKILVEYPDTSLVIDGHTDST---GSDTTNQILSERRAESVRSFLLSQGVAAGRAIA- 197

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            G         +   +    NRR++I +   +
Sbjct: 198 RGNGERYPLCTNSTADGRSCNRRVEIQILPLK 229


>gi|84515818|ref|ZP_01003179.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
 gi|84510260|gb|EAQ06716.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
          Length = 637

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283
           +I++ D R    FD  S+        V+  I EVL       I + G+TD+         
Sbjct: 488 IIAMTDGRKIT-FDPGSASITAAAQPVIDDIAEVLRLCGDLRIRVAGYTDSQ---GREAM 543

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
           N RLS DRA +    L    V       +  G A      A++    ANRRI+  +
Sbjct: 544 NLRLSQDRADAVLTALRARRVPVSTFEAVGYGIADPIADNATEAGREANRRIEFSL 599


>gi|120599047|ref|YP_963621.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|146292882|ref|YP_001183306.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|120559140|gb|ABM25067.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145564572|gb|ABP75507.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 288

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 84/277 (30%), Gaps = 13/277 (4%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+    +       +    + P+ +       +    +  N+    +      +  + + 
Sbjct: 14  FSRQLLSYSLLLTTVAACSSAPKMAEGISDIRTELNTLQANNELAILAPAAISQAEEAVR 73

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                + N Q S+H      R         +S   E                 +     +
Sbjct: 74  AAEQPVKNEQLSQHLVFVADRKVNIALAQAQSRFAEDQQKVLAKNRDDARLDARTTEANQ 133

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             +   LA+  ++       D   +  L     +  G ++++ D     +FD   +    
Sbjct: 134 AHQDARLARADAADARQESDDAQAQLALLNARESERGWVVTLGD----VLFDTGKANLKS 189

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
            T   L  +   L    +    I G+TD+         N  LS  RA S    L   GV 
Sbjct: 190 STSQHLTNLAAFLGKYPQRGAIIEGYTDSV---GTEEYNLGLSERRADSVSNFLQAQGVQ 246

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             R+S   G         ++  +    NRR+++++ +
Sbjct: 247 SSRLSS-QGKGESFPVANNESASGRQQNRRVEVIITN 282


>gi|330951040|gb|EGH51300.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 229

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 95  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++    
Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVN 209

Query: 327 MNSANRRIDILVEDRQG 343
             + NRR+++ ++   G
Sbjct: 210 GRAQNRRVEVNLKPIPG 226


>gi|264677568|ref|YP_003277474.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|262208080|gb|ACY32178.1| OmpA/MotB [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  P     L  +   +      + I  GHTD+    + A  N +LS+ RA +
Sbjct: 106 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDS--IGSDAY-NQKLSVRRAEA 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
               L+  G+ + R+    G    +      +    + NRR++I V   + 
Sbjct: 163 VKAYLVSKGIEKSRVY-TEGKGKKQPVADNKTAAGRAQNRRVEIEVVGTKA 212


>gi|226358108|ref|YP_002787847.1| OmpA family protein [Deinococcus deserti VCD115]
 gi|226319751|gb|ACO47745.1| putative OmpA family protein [Deinococcus deserti VCD115]
          Length = 200

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRA 292
           MF   +++  PE    L     VL    +    + I GHT  S      R  W LS  RA
Sbjct: 91  MFVGDTAVLTPEGQSALVAFARVLRAQGKHWKRVRIEGHTQTSRPNTPER--WGLSAGRA 148

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            +  +   +K GVS +R+  ++              +  N R++ILVE  Q
Sbjct: 149 SAVAEAFYLKGGVSPNRL-AVAARGGQTPYDGRK-FDVRNERVEILVEYAQ 197


>gi|167835831|ref|ZP_02462714.1| ompA family protein [Burkholderia thailandensis MSMB43]
          Length = 215

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  + ++  S+ G+TD++     A  N  LS +RA S 
Sbjct: 108 FATNQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAYNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
              L +  V+  R+S   G          A++   + NRR++I +   Q 
Sbjct: 165 VNALSQRSVAASRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213


>gi|193213735|ref|YP_001994934.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087212|gb|ACF12487.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 264

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + +        +L ++ E L      + I GHTD+   +  +R N+ LS+ RA +  
Sbjct: 160 FPVNRTELPYSAHDMLDELAEKLLAKRLSVEIVGHTDS---KGSSRFNYNLSVQRAAAVK 216

Query: 297 QVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
           + L++ GV      +  G   +    +  +      NRRI++ V
Sbjct: 217 KYLIRRGVPAS-WLRAYGVGSNEPITRNKTKEGREKNRRIEVKV 259


>gi|258404319|ref|YP_003197061.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796546|gb|ACV67483.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 428

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 220 TRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
           T  G+ +        +D   + +FD   S+   +    L     +L  + E    I GHT
Sbjct: 303 TPQGVQVDEKGCPVPMDVSISILFDIDKSVVRGDYHDELADATAMLNKNPEANAVIEGHT 362

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNS 329
           D++   + A  N  LS  RA S    L+ +  +   R+     +   +    +       
Sbjct: 363 DST--ASAAY-NMELSKKRAQSVRDYLVDTFDIDPQRL-STKAYGESQPTATNTTRFGRK 418

Query: 330 ANRRIDILVE 339
            NRR+ I ++
Sbjct: 419 LNRRVVITLQ 428


>gi|153832936|ref|ZP_01985603.1| putative protein F-related protein [Vibrio harveyi HY01]
 gi|148870859|gb|EDL69758.1| putative protein F-related protein [Vibrio harveyi HY01]
          Length = 209

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211
             D+    ++  +  +  +    P            + +  +   +     G+++    +
Sbjct: 19  NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFL 78

Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268
            +  +   T +G  ++I + +Q +   F   S+    ++   +Q +G  LA  +   + I
Sbjct: 79  NRHQIAHETISGEHLMIRLKEQVH---FQTGSARLSAQSQDWIQSLGHYLAGRTDVDVVI 135

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GH D++   +       LS  RA    + L+ + +   R+    GF  +  + ++   +
Sbjct: 136 DGHADSTGAASFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 191

Query: 329 SA--NRRIDILVE 339
               NRR+++++ 
Sbjct: 192 GKACNRRVELMLM 204


>gi|66044258|ref|YP_234099.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63254965|gb|AAY36061.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330945118|gb|EGH46848.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330969323|gb|EGH69389.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 229

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 95  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++    
Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVN 209

Query: 327 MNSANRRIDILVEDRQG 343
             + NRR+++ ++   G
Sbjct: 210 GRAQNRRVEVNLKPIPG 226


>gi|239906204|ref|YP_002952943.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
 gi|239796068|dbj|BAH75057.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 77/185 (41%), Gaps = 9/185 (4%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVK 213
           K L +    E    +   +      +++  A+ R   ++  +A +    ++         
Sbjct: 56  KQLEQYFKDEPKPAQGALFSPDATERQRAAALNRDDAMRYTIAMRFKKIITEDPFLKNSS 115

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           G+  +    G+L+ +   +N  +F   S+    +   ++ ++ +V+      + IRGH D
Sbjct: 116 GISSDDV--GVLLRL---QNGMLFAPGSAELTEQAKKLMAEVVDVMKTYNVFLIIRGHAD 170

Query: 274 AS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPM-NSA 330
           A+   +     NW LS  RA +A + ++  G  +    +   +   R  +  ++P   +A
Sbjct: 171 AAEAAKGHFASNWELSGARAAAAARAVIAGGGIQASRVRAVAYGDSRPLMPETNPEAAAA 230

Query: 331 NRRID 335
           NRR++
Sbjct: 231 NRRVE 235



 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 26  TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
              +  SWK+ YADF+T +MAFFL+MWIIN     T K +EQYF               D
Sbjct: 19  PKAHGSSWKVAYADFVTAMMAFFLLMWIINMVPPATLKQLEQYFK--------------D 64

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
           E  P + +  +            N  D    +   + +    E+     S+   S+  
Sbjct: 65  EPKPAQGALFSPDATERQRAAALNRDDAMRYTIAMRFKKIITEDPFLKNSSGISSDDV 122


>gi|254440083|ref|ZP_05053577.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198255529|gb|EDY79843.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 720

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  SS      +I  +  +  V+     +   + I GHTD+         N  LS DRA 
Sbjct: 609 FLSSSVRLDATSIRTINALAAVILPCVAADLTLDIGGHTDS---SGDEPTNKALSQDRAN 665

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +    L+  GV +  ++   GF   +    ++     +ANRR DI
Sbjct: 666 AVRAALIARGVPDVAMTA-FGFGQTQPIADNETPEGRAANRRTDI 709


>gi|156973571|ref|YP_001444478.1| hypothetical protein VIBHAR_01273 [Vibrio harveyi ATCC BAA-1116]
 gi|156525165|gb|ABU70251.1| hypothetical protein VIBHAR_01273 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F  +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L++ G+  DRI    G   +    +++       NRR++++V
Sbjct: 262 AESVAHALIEKGIDADRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309


>gi|126731561|ref|ZP_01747367.1| OmpA/MotB [Sagittula stellata E-37]
 gi|126708097|gb|EBA07157.1| OmpA/MotB [Sagittula stellata E-37]
          Length = 220

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F  +S    PE +  L  + + L     S   +   GHTD       A  N  LS  RA
Sbjct: 114 LFAYNSDDLTPEAMGKLSSLADALRDPRLSDARLVFIGHTDGV---GSAAYNMDLSRRRA 170

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +  + +  + G+   RI +  G    RLK + DP  + NRR+ +++  
Sbjct: 171 EAVARFVQGTMGLPPSRI-RAEGVGFSRLKNSFDPAAAQNRRVQLVLVP 218


>gi|257463423|ref|ZP_05627818.1| Outer membrane porin F [Fusobacterium sp. D12]
 gi|317060987|ref|ZP_07925472.1| outer membrane porin F [Fusobacterium sp. D12]
 gi|313686663|gb|EFS23498.1| outer membrane porin F [Fusobacterium sp. D12]
          Length = 193

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 193 QDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSIP 244
           +DL+ + +   +    D   K +  +    + G+ I       I+      +FD      
Sbjct: 38  RDLSTEGNQNFAIEDIDTAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFDKYEV 97

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                  L+ +   L  +++  I I G+TD   F      N  LS++RA +    L+  G
Sbjct: 98  KDGIKPSLRTLANALGANSDIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVNHG 154

Query: 304 VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
             E+ I  I G+         A++   + NRR++ ++
Sbjct: 155 AIENNI-SIEGYGKQNPVASNATESGRARNRRVEFII 190


>gi|167897282|ref|ZP_02484684.1| hypothetical protein Bpse7_26327 [Burkholderia pseudomallei 7894]
          Length = 481

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 305 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 364

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 365 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 417


>gi|254467364|ref|ZP_05080775.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206688272|gb|EDZ48754.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 209

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+        VL +    +         + GHTDA         N  L L RA +A
Sbjct: 66  FDFDSAQLDQTARAVLDQQAHWIRQFPEVRFRVFGHTDAV---GSDAYNRALGLRRARAA 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +      +  I +      NRR
Sbjct: 123 VNYLVSRGISRSRLEAVISHGETQPLIPTPERERRNRR 160


>gi|167913946|ref|ZP_02501037.1| hypothetical protein Bpse112_25907 [Burkholderia pseudomallei 112]
          Length = 483

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 307 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 366

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 367 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 419


>gi|171057646|ref|YP_001789995.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170775091|gb|ACB33230.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 243

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD    +  P+    L  +   +      + I  GHTD+         N +L ++RA +
Sbjct: 134 FFDTGKFVLKPDAASKLDDLVSKVKDINLEVIIAVGHTDSD---GSDAYNQKLGVNRAEA 190

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             + L+  GV ++R+    G    +    +      + NRR++I V
Sbjct: 191 VKKYLVSKGVEQNRVY-TEGKGEKQPVADNGTKEGKAKNRRVEIEV 235


>gi|124267424|ref|YP_001021428.1| putative signal peptide protein [Methylibium petroleiphilum PM1]
 gi|124260199|gb|ABM95193.1| putative signal peptide protein [Methylibium petroleiphilum PM1]
          Length = 219

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   PE    L  +   +A     + I  GHTD+         N +LSL R+ +
Sbjct: 111 FFDFDKATLKPEAKSKLDDLASKIAGLNLEVVIAVGHTDSV---GSDAYNQKLSLRRSEA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L   G+ ++RI    G    +    +      + NRR +I V
Sbjct: 168 VKAYLESKGIEKNRIY-TEGKGEKQPVADNKTADGRAKNRRTEIEV 212


>gi|288941479|ref|YP_003443719.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288896851|gb|ADC62687.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 680

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 99/332 (29%), Gaps = 40/332 (12%)

Query: 19  KKVAIDDTPNNLG-SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           +  ++D   +     W+I  A  + +L    LV W I ++     K I       G++  
Sbjct: 381 RHGSVDSRRHGRRLGWEIT-AMVIGILSGIGLVGWYIQSSS---LKPIASPIETQGQDTT 436

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
             +     E+  P      +   +    +  +      G        +         + +
Sbjct: 437 EKAARSAAERLVPSVPVTEQTPETPPFDVLISLAQEPSGPEADAVTVEESVIEEAPGTVA 496

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             S    N+ + ++E   +   + + E     E          E++ +      L  L+ 
Sbjct: 497 GDSPLQTNAASSETESVPEAAATAEPETEAPSESVPAPDRPGLERLESG-----LAALSI 551

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++       +  ++ + +                     F   S         +L +   
Sbjct: 552 EVERLAPNHIRADLSRLIQ--------------------FRDGSVALDESARTLLARFAG 591

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           +L       + I  HTD         +N  LS  RA     +L   G+   RI+   G  
Sbjct: 592 LLKEDERVRLHIVTHTDTQ---GATTNNQVLSERRAADIALILRLEGIGASRITH-EGKG 647

Query: 317 HHRLKIASDPMNS----ANRRIDI-LVEDRQG 343
               K   +         NRRI+I L+E  + 
Sbjct: 648 MSEPKFTREEERRLGPWINRRIEIDLIESDEA 679


>gi|254419256|ref|ZP_05032980.1| Rickettsia 17 kDa surface antigen family [Brevundimonas sp. BAL3]
 gi|196185433|gb|EDX80409.1| Rickettsia 17 kDa surface antigen family [Brevundimonas sp. BAL3]
          Length = 224

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S   P  + VL  +  VL       I + GHTD++        N  LS  RA S 
Sbjct: 119 FATNQSSIDPRFLPVLDDVARVLQEYDRSTIDVIGHTDST---GGDAINQPLSERRAASV 175

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              L++ GV  +R+  ++G +      ++      + NRR++IL+  
Sbjct: 176 ASELVRRGVIAERLY-VAGNSSRNPVASNATPEGKAQNRRVEILIRP 221


>gi|167722659|ref|ZP_02405895.1| hypothetical protein BpseD_26829 [Burkholderia pseudomallei DM98]
          Length = 480

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 304 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 363

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 364 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 416


>gi|149919402|ref|ZP_01907883.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149819708|gb|EDM79133.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 182

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279
            G  I I        F   S+  L ++  +L  + EV+    E  ++ I GHT       
Sbjct: 58  EGDHIII---DGKIHFAHDSAEILEDSFEILDDVAEVMNAHPELPMLDIIGHTSTE---G 111

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI- 336
             + N  LS  RA +    L   GV   R++   G          +++     NRR++  
Sbjct: 112 SDKHNMELSTARAKAVADYLAGHGVDASRVTS-EGKGETEPIADESTEEGKRQNRRVEFK 170

Query: 337 LVEDRQG 343
           +++  + 
Sbjct: 171 IIKPEEA 177


>gi|323497295|ref|ZP_08102314.1| OmpA family protein [Vibrio sinaloensis DSM 21326]
 gi|323317652|gb|EGA70644.1| OmpA family protein [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 211 IVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           +  GV +E      I++ + D      F+  SS  +P++   L  +GE L+      I I
Sbjct: 76  LKNGVDYEVLPGNHIMVKLKDTIK---FNTGSSQVMPDSAYWLDMMGEYLSTQPGIDIVI 132

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GH D++   +       LS+ RA +  Q L+++ V+ D I    G+       ++  M 
Sbjct: 133 DGHADSTGAPSFNDS---LSMKRAKAVKQQLVRNNVAMDSIF-TRGYGEFVPACSNASMA 188

Query: 329 SA--NRRIDIL 337
               NRR+++L
Sbjct: 189 GKACNRRVEVL 199


>gi|315181920|gb|ADT88833.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218]
          Length = 316

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD SS          L+ +   L    +  I I GHTD++        N +LS  R
Sbjct: 210 DALSFDSSS--LNATQQQALRTLAATLNKQPQAQILIIGHTDST---GSDAYNTKLSTRR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +A  VLM++ V+E RI K+ G    R    +      + NRR+++ +
Sbjct: 265 AQAAADVLMENQVAEHRI-KVFGEGQTRPIDTNTTPAGRAHNRRVEVQI 312


>gi|327539245|gb|EGF25868.1| OmpA/MotB domain protein [Rhodopirellula baltica WH47]
          Length = 282

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 94/259 (36%), Gaps = 14/259 (5%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            QNP        +          N +  ++   N++ Q     N       +Q  +  + 
Sbjct: 27  SQNPYLAGGGTSVWQPPPSTTAVNGIQAQVAELNRRVQLLDDNNRQLTTQLAQSEQQSQ- 85

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KISSTLS 204
                     +L +    + +   E        ++ +  + +   +++  A  + ++ L+
Sbjct: 86  ----VYRDELNLVRKQLSDTTQQYESARIAAQDAQTQARSFQASAQMRGGATIRANTNLN 141

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262
            +     + G+  E     + + +   +   +F + +    P    +L      L     
Sbjct: 142 QMAGRLNLGGLKVEQDGEVLRVVLPSDQ---LFAQGTGQLQPSAGAILDPTAAQLRSVFP 198

Query: 263 TEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHR 319
            + I I G+TD +P +   A    +L+  +  +    L + SG+ E ++  ++ G  + R
Sbjct: 199 RQRIGIEGYTDNAPMYGGAAGSAHQLTSAQTGAVLDWLTRRSGMPEQQLFTVAQGSNNPR 258

Query: 320 LKIASDPMNSANRRIDILV 338
               +    +ANRRI++++
Sbjct: 259 QDNTTPAGRAANRRIELVI 277


>gi|237799776|ref|ZP_04588237.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022631|gb|EGI02688.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 229

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 95  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++    
Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQTHL-SVRGAGPDQPIASNADVN 209

Query: 327 MNSANRRIDILVEDRQG 343
             + NRR+++ ++   G
Sbjct: 210 GRAQNRRVEVNLKPIPG 226


>gi|124005444|ref|ZP_01690285.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123989266|gb|EAY28844.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 300

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S+      +   L ++   L    +    I GHTD +     A  N ++S  RAYS
Sbjct: 195 FESGSTELHDARSEEELMRLVSFLKKHPKLKGEIAGHTDNT---GRAAANLQISTQRAYS 251

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-NRRIDILVE 339
            Y+ L K+GV   ++    G+   R K   ++P+N   NRRI+  + 
Sbjct: 252 VYKYLTKNGVKPAQLI-YRGYGATRPKFPNNNPVNRRKNRRIEFKIL 297


>gi|37704624|gb|AAR01584.1| OprF [Pseudomonas sp. MFY70]
 gi|37704664|gb|AAR01604.1| OprF [Pseudomonas sp. MFY162]
          Length = 298

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 216 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
            QVL+K GV+  R++ + G+   R   
Sbjct: 273 KQVLVKDGVAPSRVTAV-GYGESRPVA 298


>gi|119385186|ref|YP_916242.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374953|gb|ABL70546.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 197

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P+    L+++   +  S   +  I GHTDA   +     N  LS  RA   
Sbjct: 96  FAFDSASIAPDQRPALERMCSAMRQSDVGLFRIVGHTDA---KGSDSYNETLSKLRAEEV 152

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L++  G++  R+  + G     L   +DP  + NRR++
Sbjct: 153 RRWLVQDCGITASRLEAL-GMGKRFLANPADPAAAENRRVE 192


>gi|117925243|ref|YP_865860.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608999|gb|ABK44454.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1]
          Length = 257

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 15/177 (8%)

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
           E+   +P  +         +  L  L +K+ + L  +V +   +     T + G ++ I 
Sbjct: 61  EQINAIPTGNTIIAPEFASEMVLVQLREKVENVLGPMVDNGEAE---MYTDQDGFVMQI- 116

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST----EVISIRGHTDASPFRNIA-RDN 284
           D   T  F   +          L +I  +L          I I  HTD +P        N
Sbjct: 117 DSDTT--FVPGTLQLSDTFQAKLTEICNILTTHPDTKNNKIRIIAHTDTTPPPGGMLPTN 174

Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           W LS  +A +    +  + GV   R+  +        K ++D     S NRRI+IL+
Sbjct: 175 WALSAAQAAAVVGYMSTQGGVDPVRLE-VRAKGEFAPKESNDTADGRSKNRRIEILI 230


>gi|331002828|ref|ZP_08326342.1| hypothetical protein HMPREF0491_01204 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413317|gb|EGG92685.1| hypothetical protein HMPREF0491_01204 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 409

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 15/283 (5%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
              ++   + + T   G     +  +  +  +      +++  N   +     +   QY+
Sbjct: 129 AGQYSDGNQTVQTEGDGSGQYNDSEKGITIQRDADGSGQYLDSNKGIILQVDADGSGQYK 188

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
                I    ++  +   KNS    S    +          + + ++             
Sbjct: 189 DDRYGINLQVDANGTGMYKNSQNDVSIAVDEEEVIYKAGDVVIEIKSDGSGSYENSATGL 248

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILIS----IIDQRNTPMFD 238
           +           KI      + AD +    K  L  +      I     +I      +FD
Sbjct: 249 IIENDGQGKAVIKIDDDEKEVKADPLDFTYKLPLLNSVPAVPAIEANSIMITMDAGVLFD 308

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                   E+   L  + +VL  +      I GHTD+         N  LS +RA S  +
Sbjct: 309 VDKYDLRNESKETLNNLAKVLKEANISAFEIDGHTDSDA---DDAYNQTLSENRANSVKE 365

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            L+  GV+ +     +G+   R   ++D       NRR++I++
Sbjct: 366 YLVSVGVTAN--ITTNGYGESRPVASNDTPEGKQQNRRVEIII 406


>gi|313674920|ref|YP_004052916.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312941618|gb|ADR20808.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 639

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+++S+   P+    L K+ + L    E  + I GHTD+         N  LS +RA + 
Sbjct: 531 FEENSAKLRPDMYSDLDKVVDFLLDYPEFKLKISGHTDS---SGDELRNKSLSQERADAI 587

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVEDRQ 342
              +++   + E+R+    G+ + +  +    +D     NRR++  +   +
Sbjct: 588 RDYIIILHPIEEERVVA-EGYGNSQPVVEEEITDDDRRLNRRVEFEIYRPK 637


>gi|167741629|ref|ZP_02414403.1| hypothetical protein Bpse14_26418 [Burkholderia pseudomallei 14]
          Length = 472

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 296 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 355

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 356 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 408


>gi|284038953|ref|YP_003388883.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283818246|gb|ADB40084.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 285

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 237 FDKSSSI--PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+     P+    +++    L  H TE ++I GHTD++        N +LS  RA 
Sbjct: 180 FPTGSTEHIVTPDNEQFVREAITYLYNHPTERLTITGHTDST---GTEAFNLKLSRLRAM 236

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
                L+K G +  R  ++    +      ++      ANRR+ +LV+ R
Sbjct: 237 VVRDKLIKQG-ASKRWIQVIAMGNKLPIAPNNLPEGREANRRVTLLVKKR 285



 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 235 PMFDKSSSIPLPETIV-VLQKIGEVLAHSTEVI-SIRG-HTDASPFRNIARDNWRLSLDR 291
            +F K+ S          L  +   L +    + ++ G HT A   +     N  L + R
Sbjct: 55  SLFHKAESTLRQSDKPSALDTLAAYLINHPRRLLTVVGYHTPAEN-KLTLMPN--LGVMR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           A    Q L+ +GV ED++ +I G A   L    D  ++
Sbjct: 112 ADVVRQYLVSAGVPEDQV-QIQGQASELLNFIKDSTSA 148


>gi|171319658|ref|ZP_02908751.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
 gi|171095111|gb|EDT40119.1| type IV / VI secretion system protein, DotU family [Burkholderia
           ambifaria MEX-5]
          Length = 404

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A +R   L  LA+ +   L   VA   V+ +    + T      +  R   MF    +  
Sbjct: 251 APRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDT------LTLRFGGMFAPGDAAV 304

Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A  T    + + G+ D++  R+     N  LS  RA    Q+L+ 
Sbjct: 305 APWGASVVASAGREIAVLTNSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364

Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340
           + VS   IS + +G A       +    + NRR+++ + D
Sbjct: 365 ADVSAPHISVEGNGDADSLADNGTAAGRARNRRVEVTITD 404


>gi|150003007|ref|YP_001297751.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
 gi|319642207|ref|ZP_07996867.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A]
 gi|149931431|gb|ABR38129.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
 gi|317386193|gb|EFV67112.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A]
          Length = 399

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205
           + + KG D      +  +    +  F P    + I+A+   +       LA++I      
Sbjct: 214 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 272

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            +   +        T    +  I     +  F   S++    + V LQ+I +++  +   
Sbjct: 273 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 331

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G+ D+      A  N +LS DRA +    L+K GV+++ +  ISG          
Sbjct: 332 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 388

Query: 325 DPMNSANRRIDI 336
               + NRR+ I
Sbjct: 389 ----AFNRRVII 396


>gi|21666310|gb|AAM73654.1|AF390104_1 outer membrane protein HMP [Acinetobacter baumannii]
          Length = 346

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328


>gi|86144391|ref|ZP_01062723.1| Outer membrane protein [Vibrio sp. MED222]
 gi|85837290|gb|EAQ55402.1| Outer membrane protein [Vibrio sp. MED222]
          Length = 353

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            +  +  MF+ +S+    E    L  + EVL       +++ GHTD++     A  N  +
Sbjct: 225 TESFSQGMFETNSTELSSEGKSALMPLVEVLQAHPQSSVNVVGHTDST---GAAEYNMMI 281

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           S  RA +    + + G+  DRI+  SG        ++      + NRR+D
Sbjct: 282 SKKRAAAVAAYIEEQGIEADRITA-SGEGEENPVASNATAEGRAQNRRVD 330


>gi|84391232|ref|ZP_00991563.1| outer membrane protein [Vibrio splendidus 12B01]
 gi|84376521|gb|EAP93399.1| outer membrane protein [Vibrio splendidus 12B01]
          Length = 222

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 14/209 (6%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           + +  +++  G+    S      I           + +     +++  +           
Sbjct: 18  QATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGG 77

Query: 204 SGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
            G   D     +  E   +G+ +        ++   N   F   S          L+ + 
Sbjct: 78  IGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFGSGSYALESSIHNTLRGVA 137

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L    +  + I GHTD++        N  LS  RA S    L+   V+  R     G 
Sbjct: 138 RILVEYPDTSLVIDGHTDST---GSESSNQILSERRAESVRAFLISQDVAAGRAIA-RGN 193

Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   ++     + NRR++I +   +
Sbjct: 194 GERYPLCDNNTSQGRACNRRVEIQILPLK 222


>gi|237707997|ref|ZP_04538478.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA]
 gi|265754217|ref|ZP_06089406.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA]
 gi|229457983|gb|EEO63704.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA]
 gi|263234926|gb|EEZ20481.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA]
          Length = 395

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205
           + + KG D      +  +    +  F P    + I+A+   +       LA++I      
Sbjct: 210 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 268

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            +   +        T    +  I     +  F   S++    + V LQ+I +++  +   
Sbjct: 269 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 327

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G+ D+      A  N +LS DRA +    L+K GV+++ +  ISG          
Sbjct: 328 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 384

Query: 325 DPMNSANRRIDI 336
               + NRR+ I
Sbjct: 385 ----AFNRRVII 392


>gi|212690547|ref|ZP_03298675.1| hypothetical protein BACDOR_00029 [Bacteroides dorei DSM 17855]
 gi|254883655|ref|ZP_05256365.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA]
 gi|294775642|ref|ZP_06741150.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|212666896|gb|EEB27468.1| hypothetical protein BACDOR_00029 [Bacteroides dorei DSM 17855]
 gi|254836448|gb|EET16757.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA]
 gi|294450486|gb|EFG18978.1| OmpA family protein [Bacteroides vulgatus PC510]
          Length = 401

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205
           + + KG D      +  +    +  F P    + I+A+   +       LA++I      
Sbjct: 216 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 274

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            +   +        T    +  I     +  F   S++    + V LQ+I +++  +   
Sbjct: 275 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 333

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G+ D+      A  N +LS DRA +    L+K GV+++ +  ISG          
Sbjct: 334 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 390

Query: 325 DPMNSANRRIDI 336
               + NRR+ I
Sbjct: 391 ----AFNRRVII 398


>gi|167576586|ref|ZP_02369460.1| unnamed protein product; Similar to putative exported protein
           [Burkholderia thailandensis TXDOH]
          Length = 541

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    +   P      +   +  +LA+  + + I GH+D+         N +LS  RA 
Sbjct: 424 LFATGQATFSPGAVQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 480

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +     +  GV + R   + G         +      + NRR++IL+  
Sbjct: 481 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRALNRRVEILLIP 528


>gi|296390513|ref|ZP_06879988.1| hypothetical protein PaerPAb_20266 [Pseudomonas aeruginosa PAb1]
          Length = 158

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L     + + + GHTD   + +    N +LS  RA
Sbjct: 52  KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 108

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    +    +      S NRR+ I+V
Sbjct: 109 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 155


>gi|93005202|ref|YP_579639.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
 gi|92392880|gb|ABE74155.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
          Length = 392

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 226 ISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           + I D+        FD   S    +    + K+ E +         + GH  AS     A
Sbjct: 259 VDITDELKMELRVFFDNDKSAIKTQYKPEIAKVAEKMREYPNSTARVEGH--ASKTGPSA 316

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           R N RLS  RA +   +L    G++ +R+S + G+ + +    ++     + NRR+
Sbjct: 317 RYNQRLSEARAVAVKSMLTNEFGIAPNRLSTV-GYGYDQPIADNNTEEGRAMNRRV 371


>gi|262038680|ref|ZP_06012041.1| outer membrane protein [Leptotrichia goodfellowii F0264]
 gi|261747295|gb|EEY34773.1| outer membrane protein [Leptotrichia goodfellowii F0264]
          Length = 147

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           ++++    + +FD   S   P+   +LQ + E +  +   ++I GHTD+   +     N 
Sbjct: 32  VTVVLDERSLLFDFDKSNVKPQYYGILQNLKEYIEVNDYDVTIIGHTDS---KGTNEYNM 88

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +L + RA S    +++ GV   RI  +           +D     + NRRI+  +  +
Sbjct: 89  KLGMRRAESVKAKMIEFGVPASRIVGVESRGEEEPVATNDTAEGRALNRRIEFKLVRK 146


>gi|51598427|ref|YP_072615.1| outer membrane protein [Borrelia garinii PBi]
 gi|51572998|gb|AAU07023.1| outer membrane protein [Borrelia garinii PBi]
          Length = 389

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F   S   L +    L  I ++
Sbjct: 253 IETEVENYIQEKKIKDIGVEKNNKGINLS-FDIE----FYPDSFQILQKEYKKLDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V ++D+I    G+ 
Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMY---ELSEKRARTIGNYLIKMKVKNKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388


>gi|260889292|ref|ZP_05900555.1| outer membrane protein, porin F [Leptotrichia hofstadii F0254]
 gi|260860703|gb|EEX75203.1| outer membrane protein, porin F [Leptotrichia hofstadii F0254]
          Length = 269

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 17/262 (6%)

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            M              R    + +++  +  T N V        QK        ++  ++
Sbjct: 14  AMAVPTVSEKMTTSDMRKDIIRANVADIQQDTANEVPTLDTPNPQKPVATADNPDLITVA 73

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            +Q     +    R S   +   K+         +      P++     +   +     +
Sbjct: 74  LTQDGTGTRIVNNRSSGTYQTSGKNAVNLSQQKTQAVQNNQPVTAASAQSEAEQTT-ATV 132

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           ++     ++      I K  +       +            F K+S+    E   VL+ I
Sbjct: 133 SEIQEKPINNPQKVQISKSEIITLRSNDLN-----------FQKNSTDLKKEAYPVLRDI 181

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            + +  +  ++SI G+TD S   +    N RLSL RA      L++ G+S+DR+  + G 
Sbjct: 182 KDYIEKNDFLVSIIGYTDKSGVSSY---NKRLSLRRAEKVSLKLIELGLSKDRVVDLIGR 238

Query: 316 AHHRLKIASDPMNSA--NRRID 335
                   +D       NRR++
Sbjct: 239 GESNPIKTNDTEEGREGNRRVE 260


>gi|254483240|ref|ZP_05096472.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
 gi|214036463|gb|EEB77138.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
          Length = 329

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 211 IVKGVLFETTRTGILISIID---QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--- 264
           I K V       G+  +I +      +  F+  S     + I  L + G  L        
Sbjct: 194 IRKVVESTEAEEGLNDAIGEVSFDVQSINFEFGSDELAADGIRQLDEFGAALVSPELEQL 253

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + GHTD          N  LS  RA +    L  +   +    ++ G    +  +  
Sbjct: 254 KLRVAGHTDDQ---GEESYNLDLSQRRAKAVALYLESNYEVDSGRLEVVGMGEEKPLVPD 310

Query: 325 D--PMNSANRRIDIL 337
                 + NRR++++
Sbjct: 311 ASLEARAKNRRVEMV 325


>gi|237725269|ref|ZP_04555750.1| major outer membrane protein OmpA [Bacteroides sp. D4]
 gi|229436535|gb|EEO46612.1| major outer membrane protein OmpA [Bacteroides dorei 5_1_36/D4]
          Length = 395

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205
           + + KG D      +  +    +  F P    + I+A+   +       LA++I      
Sbjct: 210 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 268

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            +   +        T    +  I     +  F   S++    + V LQ+I +++  +   
Sbjct: 269 -LKAQLANQSTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 327

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G+ D+      A  N +LS DRA +    L+K GV+++ +  ISG          
Sbjct: 328 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 384

Query: 325 DPMNSANRRIDI 336
               + NRR+ I
Sbjct: 385 ----AFNRRVII 392


>gi|71733414|ref|YP_273324.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289627857|ref|ZP_06460811.1| ompA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648335|ref|ZP_06479678.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|71553967|gb|AAZ33178.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|330868443|gb|EGH03152.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330988549|gb|EGH86652.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331008919|gb|EGH88975.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++      + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|242277549|ref|YP_002989678.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120443|gb|ACS78139.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 172

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 14/125 (11%)

Query: 228 IIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNI 280
           I D          F  +S+    +   V+  +G  L         + + GHTD+      
Sbjct: 36  ITDPGGRVFLKIEFKVNSAKISEKANPVVDSLGVALTSGPGQSMQVRLVGHTDS---AGK 92

Query: 281 ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           +  N  LSL RA S    L +   +   RI  + G    +   +++     + NRR++++
Sbjct: 93  SEYNRSLSLKRAESVRNYLAVHFNIDPARIE-VQGMGEDQPIASNENAQGRAQNRRVEVI 151

Query: 338 VEDRQ 342
              ++
Sbjct: 152 NISKK 156


>gi|319426588|gb|ADV54662.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 288

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 87/249 (34%), Gaps = 21/249 (8%)

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
           Q K +L+I      +  +  + +  Q  + ++L  ++ ++++ + +     + +R +E  
Sbjct: 52  QAKNELAILAPAAISQAEEAVRAAEQPVKNEQLSQHLVFVADRKVNIALAQAQSRFAEDQ 111

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           + +      +  ++             ++         Q+             A   +  
Sbjct: 112 QKVLAKNRDDARLDARTTEANQAHQDARLARADAADARQE----------SDDAQAQLAL 161

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +    +  G ++++ D     +FD   +     T   L  +   L    +    I G+TD
Sbjct: 162 LNARESERGWVVTLGD----VLFDTGKANLKSSTSQHLTNLATFLGKYPQRGAIIEGYTD 217

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
           +         N  LS  RA S    L   GV   R+S   G         ++  +    N
Sbjct: 218 SV---GTEEYNLGLSERRADSVSNFLQAQGVQSSRLSS-QGKGESFPVANNESASGRQQN 273

Query: 332 RRIDILVED 340
           RR+++++ +
Sbjct: 274 RRVEVIITN 282


>gi|116049050|ref|YP_792148.1| hypothetical protein PA14_49900 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584271|gb|ABJ10286.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 168

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L     + + + GHTD   + +    N +LS  RA
Sbjct: 62  KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 118

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    +    +      S NRR+ I+V
Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165


>gi|95928801|ref|ZP_01311547.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95135146|gb|EAT16799.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 415

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P+ I  +      +       I I GHTD+         N +LS  RA + 
Sbjct: 311 FDTNKADIRPQHIQDMTNAAAFINKYPGEKILISGHTDSD---GSEAYNQQLSQRRADAV 367

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
              L+++   +       GF   +    +        NRR+++ + +
Sbjct: 368 KAYLIQNYAIDGTNLTAKGFGESQPIADNTTAAGKQKNRRVELSLFN 414


>gi|294651148|ref|ZP_06728483.1| OmpA/MotB domain protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822980|gb|EFF81848.1| OmpA/MotB domain protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 255

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+I       +L ++   L       + I GHTD+      A  N  LS +RA + 
Sbjct: 154 FESGSAILTETGKRILDEMAVALNKVGGKQVKIIGHTDS---SGDASRNVILSKERAVAV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
              L+   ++ DR+    G         +   +    NRRI+  V 
Sbjct: 211 QDYLVSKNIATDRL-STEGKGSSEPIADNATADGRRKNRRIEFEVL 255


>gi|315180390|gb|ADT87304.1| lipoprotein, hypothetical [Vibrio furnissii NCTC 11218]
          Length = 222

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C  +  +++  G+    S      +       +   S +     +++  +        
Sbjct: 15  SGCAATQRQNATTGETETNSATKGALLGALAGAAVGLASGDDAKERRQRALIGAAGGAAV 74

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253
               G   D     +  E   +G+ +  + +    +       F  +S          L+
Sbjct: 75  GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLVLRMQNGIGFQTNSYQLDSSIHNTLR 134

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + ++L    +  + I GHTD++        N  LS  RA S    L+  GV+  R    
Sbjct: 135 GVAKILVEYPDTSLVIDGHTDST---GSDTTNQILSERRAESVRSFLLSQGVAAGRAIA- 190

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            G         +   +    NRR++I +   +
Sbjct: 191 RGNGERYPLCTNSTADGRSCNRRVEIQILPLK 222


>gi|307943350|ref|ZP_07658694.1| OmpA/MotB domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307772980|gb|EFO32197.1| OmpA/MotB domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 192

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL---ISIIDQRNTPMFD 238
           +    K +    +L K     +     DN  + +        +    + I        FD
Sbjct: 37  QGAQAKVEVSADELRKAAFDNIKKYPGDNAAEVLPLALKLNQLRQFNVEIT-------FD 89

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
             S    PE+   +  I + L H+         + GHTDA   +     N +LS  RA +
Sbjct: 90  FDSDRIRPESYETVGVIADAL-HTPYLWGAKFFVVGHTDA---KGDREYNIKLSQRRADA 145

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             + L+ +  V  DR+  + G    +L+   +P    NRR+ ++
Sbjct: 146 IREALITTFRVPADRLEAV-GLGEEQLRDPENPDAEVNRRVQLI 188


>gi|262281137|ref|ZP_06058919.1| outer membrane protein A [Acinetobacter calcoaceticus RUH2202]
 gi|262257368|gb|EEY76104.1| outer membrane protein A [Acinetobacter calcoaceticus RUH2202]
          Length = 352

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +      + N RLSL RA
Sbjct: 233 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 289

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 348

Query: 342 Q 342
           Q
Sbjct: 349 Q 349


>gi|167848689|ref|ZP_02474197.1| hypothetical protein BpseB_25726 [Burkholderia pseudomallei B7210]
          Length = 486

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 310 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 369

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 370 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 422


>gi|226952046|ref|ZP_03822510.1| OmpA/MotB domain protein [Acinetobacter sp. ATCC 27244]
 gi|226837203|gb|EEH69586.1| OmpA/MotB domain protein [Acinetobacter sp. ATCC 27244]
          Length = 255

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+I       +L ++   L       + I GHTD+      A  N  LS +RA + 
Sbjct: 154 FESGSAILTEAGKRILDEMAVALNKVGGKQVKIIGHTDS---SGDASRNVILSKERAVAV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
              L+   ++ DR+    G         +   +    NRRI+  V 
Sbjct: 211 QDYLVSKNIATDRL-STEGKGSSEPIADNATADGRRKNRRIEFEVL 255


>gi|206564258|ref|YP_002235021.1| putative outer membrane protein A precursor [Burkholderia
           cenocepacia J2315]
 gi|198040298|emb|CAR56283.1| putative outer membrane protein A precursor [Burkholderia
           cenocepacia J2315]
          Length = 220

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           ++  ++     +F    +   P     L ++    A  T   +++ G TD+         
Sbjct: 106 VVERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 162

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
           N  LS  RA S    L   G+  D ++    G A      A+    ++NRR++I ++
Sbjct: 163 NLALSKRRAESVAAYLKAHGLKTDSMTVSGRGKADPVASNATPEGRASNRRVEIRLQ 219


>gi|158314079|ref|YP_001506587.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec]
 gi|158109484|gb|ABW11681.1| OmpA/MotB domain protein [Frankia sp. EAN1pec]
          Length = 407

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    ++    T   L K+   L      + + GHTD++  R +   N  LS+DRA  A 
Sbjct: 305 FPVGDTVLGASTRSGLDKVARALLPGDLTVIVGGHTDSTGPRAL---NQALSIDRARVAR 361

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           + L+  GV  +RI + +GF   +     AS    +ANRR+D+
Sbjct: 362 EYLVMRGVPAERI-RAAGFGPDQPIADNASTSGRAANRRVDV 402


>gi|325855004|ref|ZP_08171720.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|327313291|ref|YP_004328728.1| OmpA family protein [Prevotella denticola F0289]
 gi|325483982|gb|EGC86922.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|326945391|gb|AEA21276.1| OmpA family protein [Prevotella denticola F0289]
          Length = 225

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +  +A++ + TL     D +      E  +       +   +  +F  + S         
Sbjct: 74  MDKVARETAQTLPNARVDKVTDANGLECVK-------VTFDSGILFPLNGSKLSASAKND 126

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K   ++  ++   ++I+G+TDA         N  LS  RA +    L   GV+  +I 
Sbjct: 127 LTKFAALMKRNSNCDVAIQGYTDA---SGNDNINLPLSQRRAEAVSSYLKGRGVTGRQIR 183

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
            + GF      I +  ++ ANRR+++ +
Sbjct: 184 SVQGFGSSNP-IENKTISQANRRVEVYL 210


>gi|312887507|ref|ZP_07747103.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311299995|gb|EFQ77068.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 630

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD +      E+   L K+   L  +    I + GHTD      I   N  LS +R
Sbjct: 524 KNIFFDTNKYDIKDESKTELAKLIAFLNDNPSVKIEVSGHTDNVGVDAI---NQTLSQNR 580

Query: 292 AYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRID--ILV 338
           A + YQ L+   +S +R + K  G A       ++     NRR +  I++
Sbjct: 581 AKAVYQYLIGQHISPNRLVYKGYGKAQPIAPNTNEEGRKLNRRTEFKIII 630


>gi|317491882|ref|ZP_07950317.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920316|gb|EFV41640.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 163

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           GL A+ I  +K   F  T  G    +       +F  + S   PE+   ++K+G+ LA  
Sbjct: 29  GLTAEQIAVLKEQGFHQTDEG---WMFGLSEKVLFGNNKSNLTPESTETVKKMGKTLAQI 85

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRL 320
                 + G TD          N +LSL RA +    L + G+   R+     G      
Sbjct: 86  NILHARLDGFTDNY---GDESYNQQLSLKRANTVADALSQGGIP--RMNLTTRGMGESHP 140

Query: 321 KIASDP--MNSANRRIDILVE 339
             ++      S NRR+ I++E
Sbjct: 141 IASNSTKQGRSENRRVAIVIE 161


>gi|239995434|ref|ZP_04715958.1| sodium-type flagellar protein MotY [Alteromonas macleodii ATCC
           27126]
          Length = 118

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S+     +   L  IGE L    E+  + + G+TD+        +N +LS+ RA      
Sbjct: 18  STELTKYSQKRLTMIGEYLKEDGELELVLLDGYTDSY---GGRYNNEQLSIRRANEVKSY 74

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           L   GV EDRI +++G    R    +D     + NRR+
Sbjct: 75  LTTLGVPEDRI-QLTGHGEKRHIAPNDTRESRAQNRRV 111


>gi|90020235|ref|YP_526062.1| OmpA domain-containing protein [Saccharophagus degradans 2-40]
 gi|89949835|gb|ABD79850.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 381

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S++        ++++ + +       +S+ G+TD    R  A  N +LS  RA + 
Sbjct: 270 FDNNSAVVKESYYAEVKRVADFMNQYANTQVSVEGYTDD---RGSAAYNKQLSQKRADAV 326

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
              L+    +   R++  +GF        +D     +ANRR+
Sbjct: 327 KATLVSQFNIDAARVTA-TGFGEINPIDTNDTAAGRAANRRV 367


>gi|74095537|emb|CAJ27303.1| conserved hypothetical protein [Cronobacter sakazakii]
          Length = 536

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +F   S+   P     LQ +  ++         I GH+D +        N +LS+ RA 
Sbjct: 419 SLFSSGSARLRPHGPAALQPLFTLVNQHPENRFLIIGHSDNT---GNPEVNQQLSVSRAI 475

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           +  + L+K+         I G         +D       NRR++ +   
Sbjct: 476 AVREWLVKTTKRPATQFDIYGLGASEPVAGNDNETGRELNRRVEAIALP 524


>gi|167827195|ref|ZP_02458666.1| hypothetical protein Bpseu9_26190 [Burkholderia pseudomallei 9]
          Length = 489

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 313 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 372

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 373 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 425


>gi|83854735|ref|ZP_00948265.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842578|gb|EAP81745.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
          Length = 176

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F+  S    P+    L +  +     + +IS  GHTD+   R     N +LSL+RA + 
Sbjct: 78  FFNTDSYRVHPQGRARLAEFFKTTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             +  +SG    RI+ + G+       ++      + NRR++I+
Sbjct: 133 ASIAQQSG---ARIADVRGYGERMPAASNGTAGGMAKNRRVEII 173


>gi|330961787|gb|EGH62047.1| ompA family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 229

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++      + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|283955082|ref|ZP_06372585.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793449|gb|EFC32215.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 319

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD          N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNV---GSRAYNQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV ++RI  I G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKNRIKTI-GYGQDNPRSSNDTKEGRADNRRVD 313


>gi|255319913|ref|ZP_05361114.1| inner membrane lipoprotein YiaD [Acinetobacter radioresistens SK82]
 gi|262379192|ref|ZP_06072348.1| type VI secretion system OmpA/MotB [Acinetobacter radioresistens
           SH164]
 gi|255303046|gb|EET82262.1| inner membrane lipoprotein YiaD [Acinetobacter radioresistens SK82]
 gi|262298649|gb|EEY86562.1| type VI secretion system OmpA/MotB [Acinetobacter radioresistens
           SH164]
          Length = 209

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 16/154 (10%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +  KK+   ++G        GV       G +  I+       FD + S   P     
Sbjct: 69  LDNKEKKLRQQMAGT-------GVEVNRNPDGSVGLIM--PGNITFDTNKSTIKPNFYTT 119

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + L   +   I + G+TD++        N  LS  RA +    L   GV   RI+
Sbjct: 120 LNKVAQTLTEDNKSAILVTGYTDST---GNDSINIPLSQARAQAVANYLAGQGVPRTRIN 176

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G        ++        NRR++I +   Q
Sbjct: 177 A-QGLGASNPIASNATAEGREQNRRVEISIYATQ 209


>gi|256419593|ref|YP_003120246.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256034501|gb|ACU58045.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 671

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   +   P++++VL  +  ++  +  +I  +  HTD+   +     N +LS  RA S 
Sbjct: 557 YDFDKATLRPQSLIVLDTVVSIMQDNPNIIIEMSAHTDS---KGKDEYNMKLSQKRAQSC 613

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340
              L+  G+S +R+    G+   R    +       +P     NRR +  V  
Sbjct: 614 VDYLISKGISSERMIA-KGYGETRPIAPNTLPNGKDNPEGRQLNRRTEFKVLR 665


>gi|124383073|ref|YP_001024835.1| hypothetical protein BMA10229_1027 [Burkholderia mallei NCTC 10229]
 gi|124291093|gb|ABN00363.1| OmpA domain protein [Burkholderia mallei NCTC 10229]
          Length = 560

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 384 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 443

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 444 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 496


>gi|237742848|ref|ZP_04573329.1| outer membrane protein [Fusobacterium sp. 4_1_13]
 gi|229430496|gb|EEO40708.1| outer membrane protein [Fusobacterium sp. 4_1_13]
          Length = 164

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S   P+   +L  + E +  +   ++I GHTD   +
Sbjct: 21  EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFIMKNDYELTIEGHTD---Y 75

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
               + N  LS  RA +    L++ G+   RI  I             +    + NRR++
Sbjct: 76  IASNQYNMGLSKRRAEAVKAKLIELGLDPSRIVAIVPKGEEEPVADNKTTEGRAKNRRVE 135

Query: 336 ILVEDR 341
             +  R
Sbjct: 136 FKLVKR 141


>gi|262369640|ref|ZP_06062968.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315708|gb|EEY96747.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 485

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 14/298 (4%)

Query: 46  AFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105
           A F  ++        T+ A     N         + G   +    +  S N   + I + 
Sbjct: 181 ALFAFIFRACTEKATTETAPAANVNSSQPAKFQITTGATGDLVTCQIFSANAAYVEILQK 240

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
             K   +  IG     +     E        S  S          +  G  L   +    
Sbjct: 241 EVKQIFNNSIGCGADMQSMYHTEFIDQDAIPSVISALKGVPNVNLTWFGNQLSIQSQDPT 300

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +  K  +   P L    ++  +     + +   IS      +A+   + V      T + 
Sbjct: 301 NALKVADQIKPLLRNMTVVTQQPLDVNRAVDTSISDA-ERALAEINPEQVRALDVATALN 359

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
           + II+      FD +SS        +L +   ++  +    +++ GHTDA+     A  N
Sbjct: 360 LQIIN------FDTASSTIPDVNKSILDQAAALMQKAPQVKLTVMGHTDAT---GDAAVN 410

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
             LS +RA +    L+  GV   ++  I G+   +    +  D     NRRI+  V +
Sbjct: 411 KTLSQNRAQAVVDYLIFKGVDPAQLRAI-GYGQEKPIADNQTDEGKFKNRRIEFEVLN 467


>gi|49081488|gb|AAT50144.1| PA1119 [synthetic construct]
          Length = 169

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L       + + GHTD   + +    N +LS  RA
Sbjct: 62  KVLFGNNLDRLNPDSRNTLTKIARALLAVDIGKVRLEGHTDN--YGDEGY-NQKLSERRA 118

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    +    +      S NRR+ I+V
Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165


>gi|167818821|ref|ZP_02450501.1| hypothetical protein Bpse9_27048 [Burkholderia pseudomallei 91]
          Length = 490

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 314 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 373

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 374 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 426


>gi|126642864|ref|YP_001085848.1| outer membrane protein A [Acinetobacter baumannii ATCC 17978]
          Length = 346

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 221 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 277

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 278 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 336

Query: 342 Q 342
           Q
Sbjct: 337 Q 337


>gi|260777763|ref|ZP_05886656.1| hypothetical protein VIC_003160 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605776|gb|EEX32061.1| hypothetical protein VIC_003160 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1581

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 30/198 (15%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           +   K+   ++ I +    +L  +         ++++++ + +K  +      +D I   
Sbjct: 543 EMAKKAKSAKQGIGEVAYDYLDKIPVWNTSRENQQEKIEQVLEKARAA-----SDEITAT 597

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIRG 270
           ++  +   GI I          F+   S      P    +   + EVL   +   + I G
Sbjct: 598 MVNNSRGAGIKIEFN-------FNSRKSELERNAPLFSQLASALAEVLESESNLRVEIEG 650

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK-------- 321
           H       +    N ++S DRA  A Q+L   S V +DRI  ++ F   +          
Sbjct: 651 HACQV---DTEEANMKVSADRANYAKQLLIESSDVFKDRI-SVAVFGESKPLYIPKKGES 706

Query: 322 -IASDPMNSANRRIDILV 338
              ++P    NRR++I +
Sbjct: 707 IDRNNPNLRQNRRVEIRI 724


>gi|169632496|ref|YP_001706232.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter baumannii SDF]
 gi|169151288|emb|CAO99984.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter baumannii]
          Length = 357

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 232 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 288

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 289 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 347

Query: 342 Q 342
           Q
Sbjct: 348 Q 348


>gi|126737253|ref|ZP_01752988.1| OmpA family protein [Roseobacter sp. SK209-2-6]
 gi|126721838|gb|EBA18541.1| OmpA family protein [Roseobacter sp. SK209-2-6]
          Length = 210

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+         L +    +         + GHTD+         N RL   RA +A
Sbjct: 69  FDFDSAQLDATARAALDRQAHWIKQFPEVRFRVYGHTDSV---GSDAYNKRLGRRRAQAA 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L++ G+S  R+  +  F   R  I +      NRR
Sbjct: 126 VNYLVRQGISRHRLEALVSFGETRPVIVTAHRERRNRR 163


>gi|315122505|ref|YP_004062994.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495907|gb|ADR52506.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 190

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S I   + + VL  I   L       I+I GHTD+     +   N  +S  R+   
Sbjct: 83  FSSGS-ILHKDIVPVLNSIATTLNKFPSTKIAITGHTDS--IGTLEY-NLLISQQRSQII 138

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++ GVS DR +   GFA+ R    +D       N+R++I
Sbjct: 139 TDYLIEKGVSPDRFAPPQGFAYKRPIDTNDTQEGRKNNQRVEI 181


>gi|254459056|ref|ZP_05072479.1| OmpA domain protein [Campylobacterales bacterium GD 1]
 gi|207084327|gb|EDZ61616.1| OmpA domain protein [Campylobacterales bacterium GD 1]
          Length = 254

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  S      E +  LQ     L  +    I I G+TD+      A  N  LS +RA + 
Sbjct: 152 FAPSKYNVSEELVNDLQNFALFLKENPGYQILIYGYTDSI---GSAAANKTLSQNRANAV 208

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
            + L + G+   R++ I  G A+      +    + NRRI++ + 
Sbjct: 209 KEALSRYGIKTTRMTAIGKGEANPIADNTTKTGRAENRRIEVELL 253


>gi|300770385|ref|ZP_07080264.1| lipoprotein PG3 [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762861|gb|EFK59678.1| lipoprotein PG3 [Sphingobacterium spiritivorum ATCC 33861]
          Length = 230

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   A +I +T++G              +  GI   I+      +FD + S       
Sbjct: 80  KKMDKQAAEIENTVAGA---------EVIKSDEGI---IVKFDEGILFDFNKSDLKASAK 127

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             + K+   L    +  I + GHTD          N ++S  RA +     +  G++  R
Sbjct: 128 TNISKLVATLNKEPDTKILVIGHTDNI---GSLAANQKVSEARAAAVKTYAVSQGLNGGR 184

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I+   G  +     ++D     + NRR++I++
Sbjct: 185 IN-TEGKNYSEPLASNDTDAGRAENRRVEIVI 215


>gi|67639335|ref|ZP_00438203.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|121597986|ref|YP_990337.1| hypothetical protein BMASAVP1_0732 [Burkholderia mallei SAVP1]
 gi|126447196|ref|YP_001079177.1| hypothetical protein BMA10247_A2001 [Burkholderia mallei NCTC
           10247]
 gi|167003578|ref|ZP_02269364.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254177240|ref|ZP_04883896.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|254203187|ref|ZP_04909549.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254208522|ref|ZP_04914871.1| OmpA family protein [Burkholderia mallei JHU]
 gi|121225784|gb|ABM49315.1| OmpA domain protein [Burkholderia mallei SAVP1]
 gi|126240050|gb|ABO03162.1| OmpA domain protein [Burkholderia mallei NCTC 10247]
 gi|147746232|gb|EDK53310.1| OmpA family protein [Burkholderia mallei FMH]
 gi|147751209|gb|EDK58277.1| OmpA family protein [Burkholderia mallei JHU]
 gi|160698280|gb|EDP88250.1| OmpA domain protein [Burkholderia mallei ATCC 10399]
 gi|238519871|gb|EEP83337.1| OmpA domain protein [Burkholderia mallei GB8 horse 4]
 gi|243060913|gb|EES43099.1| OmpA family protein [Burkholderia mallei PRL-20]
          Length = 552

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 435

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 436 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488


>gi|237653594|ref|YP_002889908.1| flagellar motor protein MotD [Thauera sp. MZ1T]
 gi|237624841|gb|ACR01531.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 279

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 81/330 (24%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++  +D+  +N   W + YADF+T+L AFF+VM+ +++ ++   + +        +N+
Sbjct: 1   MRRRRKLDEEHDNHERWLVSYADFITLLFAFFVVMYSLSSVNEGKYRVLSDSLVQAFRNV 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                G        E+    K+ +   + IT+ +         Q++Q             
Sbjct: 61  NVNESG--------EQIVLPKVSVVPSQAITRPAPPAVDPVVEQRRQQAAQRMRNV---- 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
              ++  +  L+  +  G+   K T+    ++ E N  L     E  L       LQ +A
Sbjct: 109 ---ADEIRRVLSPLTGSGQ--VKVTEGAFGVSVEINASLLFAPGEAALGSNAVSALQAVA 163

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + ++     +  +     V   T R               F  +             ++ 
Sbjct: 164 RVLAPAEFPITVEGHTDNVPISTFR---------------FPSN------------WELS 196

Query: 257 EVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            V A +   + I  G T A                        L  +G           +
Sbjct: 197 AVRASTVARLFIDNGVTPAR-----------------------LTAAG-----------Y 222

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQG 343
           A  R     A +     NRR+ IL+E R  
Sbjct: 223 ADQRPVADNADEEGRGRNRRVTILIESRMA 252


>gi|218261428|ref|ZP_03476249.1| hypothetical protein PRABACTJOHN_01915 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224038|gb|EEC96688.1| hypothetical protein PRABACTJOHN_01915 [Parabacteroides johnsonii
           DSM 18315]
          Length = 214

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                  ++  ++ +N     S    +  K   L      E +     +++ + +   + 
Sbjct: 60  TALERDTTRMGKNIRNYQNMLSTNMTEQEKLNSLLSQKMSELDERERTINELQDMINAQT 119

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +R+Q+L   +   L G  +D +            + +++ D     +F+  S+       
Sbjct: 120 ERVQNLLNSVKDALLGFSSDEL----TVREKDGKVYVAMSD---KLLFESGSARVDKRGK 172

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLS 288
             L K+ EVL   ++  + I GHTD+ P      +DNW LS
Sbjct: 173 EALAKLAEVLNKQSDIDVYIEGHTDSKPINTAQFKDNWDLS 213


>gi|254487597|ref|ZP_05100802.1| OmpA family domain protein [Roseobacter sp. GAI101]
 gi|214044466|gb|EEB85104.1| OmpA family domain protein [Roseobacter sp. GAI101]
          Length = 312

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  +S   P  +  L  +   LA      +++ GHTD         DN  LS  RA S 
Sbjct: 205 FETGTSGLGPAKVAALDSLAAFLAGDPALRVALVGHTDTV---GGLEDNVALSRSRAASV 261

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            Q L+ + GVS D++    G  +     ++       ANRR++ ++    G
Sbjct: 262 RQRLIDAYGVSPDQLEA-QGMGYLAPIASNLTAQGREANRRVEAVLLPEPG 311


>gi|53721567|ref|YP_110552.1| hypothetical protein BPSS0531 [Burkholderia pseudomallei K96243]
 gi|126442377|ref|YP_001061803.1| hypothetical protein BURPS668_A0804 [Burkholderia pseudomallei 668]
 gi|126457957|ref|YP_001074752.1| hypothetical protein BURPS1106A_A0716 [Burkholderia pseudomallei
           1106a]
 gi|134283082|ref|ZP_01769784.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|167905639|ref|ZP_02492844.1| hypothetical protein BpseN_25596 [Burkholderia pseudomallei NCTC
           13177]
 gi|167921862|ref|ZP_02508953.1| hypothetical protein BpseBC_25138 [Burkholderia pseudomallei
           BCC215]
 gi|217424539|ref|ZP_03456037.1| type IV/VI secretion system protein, DotU/OmpA family protein
           [Burkholderia pseudomallei 576]
 gi|226196513|ref|ZP_03792094.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242312248|ref|ZP_04811265.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|254185465|ref|ZP_04892053.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|254296659|ref|ZP_04964113.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|52211981|emb|CAH37988.1| OmpA-family membrane protein [Burkholderia pseudomallei K96243]
 gi|126221868|gb|ABN85373.1| type IV/VI secretion system protein, DotU/OmpA family protein
           [Burkholderia pseudomallei 668]
 gi|126231725|gb|ABN95138.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|134245730|gb|EBA45822.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|157806733|gb|EDO83903.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|184209700|gb|EDU06743.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|217392463|gb|EEC32487.1| type IV/VI secretion system protein, DotU/OmpA family protein
           [Burkholderia pseudomallei 576]
 gi|225931389|gb|EEH27395.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242135487|gb|EES21890.1| OmpA family protein [Burkholderia pseudomallei 1106b]
          Length = 552

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 435

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 436 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488


>gi|304412567|ref|ZP_07394172.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307303583|ref|ZP_07583336.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304349043|gb|EFM13456.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306912481|gb|EFN42904.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 369

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +   +  F   S++        ++++   L  + E  + I GH            N  LS
Sbjct: 251 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 307

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             RA +  Q+L++  G+S++R++  +G+   +  +A D     +ANRRI+ +V  
Sbjct: 308 DKRADAVAQILVEKYGISKNRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 361


>gi|257091690|ref|YP_003165331.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044214|gb|ACV33402.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 198

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + S      +   L  I   +       I I GHTD      +  DN RL+L RA S 
Sbjct: 97  FLEGSDELTAASKTELVAILAEIKARPVPDIVIVGHTDRV---GMVADNDRLALRRADSF 153

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            + L++ G++++ I + +G       +    +     NRR++ILV
Sbjct: 154 RKKLLQQGIADEAI-QTAGRGEREPLVNTPDETPEPRNRRVEILV 197


>gi|223039685|ref|ZP_03609971.1| putative chemotaxis protein MotB [Campylobacter rectus RM3267]
 gi|222879068|gb|EEF14163.1| putative chemotaxis protein MotB [Campylobacter rectus RM3267]
          Length = 369

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 127/359 (35%), Gaps = 56/359 (15%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT------DDDTKKAIEQYFNPFG 73
           K   +    +   W I YAD M  LM  F+ M II A              +++  +   
Sbjct: 2   KTRSEGKSGDQTFW-ISYADLMAGLM--FVFMLIIGAVVVKYVLSQSDLAKLQKDLSERE 58

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSID----EHITKNSVDLKIGSTNQKKQYQRLEN 129
           K + ++   +  ++N  +    N      +      I +   ++  G   +K +   L  
Sbjct: 59  KQIASSQNELVRKENVIKEIFSNLDRAKSENKELADINRLVNEMLEGVKKEKNELTNLTQ 118

Query: 130 NIFYLSNS-------------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
                 N              Q  +          +    L +  D+ K +N++ N  + 
Sbjct: 119 TYEINLNDANKTIADLQDRVLQLGQILAQRDETLKDVNATLAQKEDVIKVLNEKFNSEIS 178

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
                +    K K +++DL+   S+ +S L A  +   V  + +       ++    + +
Sbjct: 179 RYLALEEDFNKTKDKIKDLSSLRSNVISNLRA-KLGGKVNIDPSSG-----VVSLPESIL 232

Query: 237 FDKSSSIPLPETIVVLQKIG-----------EVLAHSTEVISIRGHTDASPFRNIARDNW 285
           FD  S     E  V L++I            E++ H    I I GHT++         N 
Sbjct: 233 FDTGSYELKDEAKVRLKEILQTYFEAILNSEEIIKHID-RIVIEGHTNSV---GSYMYNL 288

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISK---ISGFAHHRLKIAS---DPMNSANRRIDILV 338
            LS  RAYS     + S   + R+ +    SG +   L I +   DP  S  RRI+I +
Sbjct: 289 DLSQKRAYSVLD-FIYSWNKDKRLERYLIASGRSFSDLVIKNGKEDPDAS--RRIEIKI 344


>gi|126173289|ref|YP_001049438.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125996494|gb|ABN60569.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 363

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +   +  F   S++        ++++   L  + E  + I GH            N  LS
Sbjct: 245 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 301

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             RA +  Q+L++  G+S++R++  +G+   +  +A D     +ANRRI+ +V  
Sbjct: 302 DKRADAVAQILVEKYGISKNRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 355


>gi|269964049|ref|ZP_06178354.1| outer membrane protein, putative [Vibrio harveyi 1DA3]
 gi|269831190|gb|EEZ85344.1| outer membrane protein, putative [Vibrio harveyi 1DA3]
          Length = 206

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +F   S    P     ++++ E L       SI  H  AS        N  LS  RA 
Sbjct: 81  RVLFANDSDEINPVFHRQIRQLSEFLNEYPST-SIELHGYASKVGGSTH-NLDLSKRRAN 138

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           +    L+  G++ +R+ +I G+    L      +  ++ NRR+   V   +G
Sbjct: 139 NVRSALLGYGIAANRV-RIVGYGDTHLAQQGTDEVSHALNRRVTASVVGYKG 189


>gi|146299407|ref|YP_001193998.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153825|gb|ABQ04679.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 666

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 23/163 (14%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFET---TRTGILISIIDQRNTPM--FDKSSSIPL 245
            L+   K I++    +  +N +K V       T  G L+ I      PM  FD   +   
Sbjct: 513 ALEKKPKPITAIPVVIKTNNSIKPVKVTIAVGTDLGKLLKI------PMNFFDLGKATIK 566

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             ++  LQK+ ++L       + IR HTD+   R+ +  N  LS  RA S    L+  G+
Sbjct: 567 KSSVPQLQKMVDMLNQYPTIKVDIRSHTDS---RSSSESNQILSDKRAQSTKDWLVSKGI 623

Query: 305 SEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           + DR++   GF   +L          ++  +  NRR + ++  
Sbjct: 624 NADRLTA-KGFGETQLVNKCADGVKCTEQQHQQNRRSEFIIVS 665


>gi|307826489|ref|ZP_07656672.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307732463|gb|EFO03357.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 238

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 17/242 (7%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
                  G   +  Q   +++ +       Q E  +N     +E  ++     +  +S  
Sbjct: 6   PPKKTNEGLELKHTQSPAVDDGLQPPITQLQGEVTQNQAKGLTESAQNKGLELEPTQSP- 64

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
            +E         +  +   + K L + A+    +     A    +    E     +L+  
Sbjct: 65  IDEGSQSAITQPQGEVTPDQAKGLTESAQPAGDSGFPTPAAEGKRSSQHEPVS--LLVL- 121

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA-SPF----RNIAR 282
                   F      P       +  I  ++     + + + GH D   PF      +++
Sbjct: 122 ----GGGFFSSGQITPRANIQDAIDNIIPLIQTRPLDNVVVEGHADKWVPFGASPAQVSK 177

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            N  +SL RA +  QVL K G++ DRI  + G        ++   +    NRR++I +  
Sbjct: 178 LNENISLRRANAIAQVLKKKGIASDRII-VHGLGDTVPLASNLTYDGRMKNRRVEIKLLP 236

Query: 341 RQ 342
            Q
Sbjct: 237 AQ 238


>gi|260548855|ref|ZP_05823077.1| outer membrane protein omp38 [Acinetobacter sp. RUH2624]
 gi|260408023|gb|EEX01494.1| outer membrane protein omp38 [Acinetobacter sp. RUH2624]
          Length = 350

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346

Query: 342 Q 342
           Q
Sbjct: 347 Q 347


>gi|148839593|sp|A3M8K2|OMP38_ACIBT RecName: Full=Outer membrane protein omp38; Flags: Precursor
 gi|193078282|gb|ABO13246.2| outer membrane protein A [Acinetobacter baumannii ATCC 17978]
          Length = 356

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346

Query: 342 Q 342
           Q
Sbjct: 347 Q 347


>gi|150021176|ref|YP_001306530.1| flagellar motor protein-like protein [Thermosipho melanesiensis
           BI429]
 gi|149793697|gb|ABR31145.1| Flagellar motor protein-like protein [Thermosipho melanesiensis
           BI429]
          Length = 288

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265
           +++     V  +    G LI+I D     +F+  S+    E   +L+K+G V+  H+T V
Sbjct: 87  ISEEYKGKVTVQEKDEGTLITISDLD---IFEPGSARLTAEAKRLLEKLGTVIIEHTTNV 143

Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296
           + I G  +  P    +I   NW LS  RA S  
Sbjct: 144 LEIYGFANEIPLPESSIYFSNWHLSSARAASVV 176


>gi|91792625|ref|YP_562276.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91714627|gb|ABE54553.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 223

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K      TR+G  I I++  N   F    ++       VL  +  V     +  + I G
Sbjct: 95  LKSTGVSVTRSGDNI-ILNMPNDVTFGVDETVLSSRAKEVLASVALVAKEFDDTRLHITG 153

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           +TD+         N RLS  RA    Q LM+  V+ +R+   SG         +      
Sbjct: 154 YTDS---SGSDSYNLRLSQVRANEVGQYLMQQKVAANRVVS-SGRGESSPIADNGTPAGR 209

Query: 329 SANRRIDILV 338
           + NRR++I++
Sbjct: 210 AQNRRVEIVL 219


>gi|114764947|ref|ZP_01444120.1| OmpA family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542659|gb|EAU45683.1| OmpA family protein [Roseovarius sp. HTCC2601]
          Length = 221

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         L++    +         + GHTD          N RL + RA + 
Sbjct: 77  FAFNSAQLDNGARATLREQANWIRQFPEVRFRVYGHTD---LVGSPAYNKRLGMARAQAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S +R+  +  +   +  I +      NRR
Sbjct: 134 VSYLAAQGISRERLEAVVSYGETQPLIVTSERERRNRR 171


>gi|317127982|ref|YP_004094264.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472930|gb|ADU29533.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 484

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289
            +  +FD   S    E   V++++   L    +  +I IRGHTD          N+ LS 
Sbjct: 372 PDDILFDFDQSSLKEEAKEVIKEVLPALDSLKDGTIIEIRGHTDNE---GDPDYNYILSE 428

Query: 290 DRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           +RA S Y  +  SG S D I  ++  F       +++       NRR++++++ R
Sbjct: 429 ERAESVYNFVRNSGESLDHIEFRVKAFGETAPIASNEDEEGRERNRRVELVIDPR 483


>gi|330873229|gb|EGH07378.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 229

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIIGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++   N  + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADTNGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|153872253|ref|ZP_02001198.1| outer membrane protein OprF [Beggiatoa sp. PS]
 gi|152071282|gb|EDN68803.1| outer membrane protein OprF [Beggiatoa sp. PS]
          Length = 175

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD         +  +L++  E L    ++  + I GHTD+      A  N  LS  RA +
Sbjct: 71  FDTDCPAIKANSYTLLREYAEALKTGLASVKLEIGGHTDS---SGPAYYNLTLSKKRAQA 127

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
               L+ +   ED    + G+   +   ++   +  + NRR++  V  
Sbjct: 128 VKDFLVFAYAVEDNRLIVKGYGETQPIASNRTRDGQAKNRRVEFKVIR 175


>gi|84501388|ref|ZP_00999593.1| OmpA/MotB domain protein [Oceanicola batsensis HTCC2597]
 gi|84390679|gb|EAQ03167.1| OmpA/MotB domain protein [Oceanicola batsensis HTCC2597]
          Length = 192

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279
              + I I        FD  S+    +    L  + +V+  +      I GHTDA     
Sbjct: 82  EDQVNIQIS-------FDFDSAALRDDQKPKLATLCQVMKSADIGTFRIIGHTDA---SG 131

Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            A  N RLSL RA    + L    G+ E R+  + G         +DP   ANRR++
Sbjct: 132 SASYNERLSLLRAEEVKRYLSGDCGIEEQRLEAV-GVGEQFPLDKADPRGDANRRVE 187


>gi|113971301|ref|YP_735094.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113885985|gb|ABI40037.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 372

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            +   +  F   S++   E    ++++   L  + E  + I GH            N  L
Sbjct: 253 QEDVGSIQFANDSAVVKKEYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPDYNMTL 309

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           S  RA +  ++L++  G+S+ R++  +G+   +  +A D    ++ANRRI+ +V   +
Sbjct: 310 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDSKEAHAANRRIEAIVTTTE 366


>gi|300771716|ref|ZP_07081591.1| outer membrane protein OprF [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761705|gb|EFK58526.1| outer membrane protein OprF [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 460

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           Q  +  F+  SS+   E+   L ++ + L  +   +++ G+  A         N  LS D
Sbjct: 355 QYGSIQFEFDSSVLKTESYSTLDRLAKELRDNNSSVTLDGYASAE---GTEAYNMTLSKD 411

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           RA +  Q L+ +GV+  +++  +G+       ++        NRR++I
Sbjct: 412 RANAVKQYLVNAGVTAAKVTA-NGYGEANPVASNATEEGRIQNRRVEI 458


>gi|227536011|ref|ZP_03966060.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244124|gb|EEI94139.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 460

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           Q  +  F+  SS+   E+   L ++ + L  +   +++ G+  A         N  LS D
Sbjct: 355 QYGSIQFEFDSSVLKTESYSTLDRLAKELRDNNSSVTLDGYASAE---GTEAYNMTLSKD 411

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           RA +  Q L+ +GV+  +++  +G+       ++        NRR++I
Sbjct: 412 RANAVKQYLVNAGVTAAKVTA-NGYGEANPVASNATEEGRIQNRRVEI 458


>gi|53716506|ref|YP_105228.1| hypothetical protein BMAA0453 [Burkholderia mallei ATCC 23344]
 gi|52422476|gb|AAU46046.1| OmpA domain protein [Burkholderia mallei ATCC 23344]
          Length = 571

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507


>gi|256421238|ref|YP_003121891.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036146|gb|ACU59690.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 594

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S   P +   L ++  +L    + VI +  HTD+   +     N +LS  RA S    L+
Sbjct: 489 SYLQPASFPSLDRLVAMLKKYPKIVIELSAHTDS---KGSNDLNEKLSDARAKSCVDYLV 545

Query: 301 KSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDRQ 342
             G+   R+ +  G+A       +       +P   + NRR +  +  R+
Sbjct: 546 SQGIESTRL-QAKGYAASHPVAPNTNKDGSDNPEGRARNRRTEFKILSRE 594


>gi|328542425|ref|YP_004302534.1| outer membrane lipoprotein [polymorphum gilvum SL003B-26A1]
 gi|326412172|gb|ADZ69235.1| Probable outer membrane lipoprotein [Polymorphum gilvum
           SL003B-26A1]
          Length = 155

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD+ S+       + + K    L  +   ++ I+GH D          N  LS  RA
Sbjct: 42  RIFFDRGSAELTETARMTIDKQAAWLRANPRWLVKIQGHADD---PGSEAANKALSTKRA 98

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
            +    L+  GV   R+  I G+   R     D +  +  NRR+
Sbjct: 99  EAVRDALVALGVDGKRMW-IKGYGIERPVTDCDELTCHVQNRRV 141


>gi|261212428|ref|ZP_05926713.1| protein F-related protein [Vibrio sp. RC341]
 gi|260838359|gb|EEX65015.1| protein F-related protein [Vibrio sp. RC341]
          Length = 182

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D+    + +  Y     + ++ +++ +  ++Q  +         LV++ I   ++     
Sbjct: 8   DVAPKGDFDVRYPEWGYAPQQSVSVAQTPKMQARSSSYEQLRQYLVSNGIEHEIMPGDYP 67

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280
                 +I  +NT  F+  S+     +   L K+ + LA  + V I + GHTD +     
Sbjct: 68  ------MIKLKNTIKFETGSAKVSASSKQWLDKMAQFLAGESGVDIVLEGHTDNT---GT 118

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            + N +LS  RA S    L++  V+++ I    G+  H     ++     + NRR+++
Sbjct: 119 QKFNDKLSEKRATSVKSALVQRQVAQNAIY-TRGYGEHVPACTNNTKKGRACNRRVEV 175


>gi|254187351|ref|ZP_04893865.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157935033|gb|EDO90703.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 571

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507


>gi|126214998|emb|CAM35534.1| hypothetical protein [Pseudomonas fluorescens]
          Length = 254

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           S        N +  +  L+ N      +       +     ++K     +       +  
Sbjct: 16  STPPNANLENARTNFSSLQTNPQATKLAALETKDASEWLDKADKAYRDKEDEKKVDQLAY 75

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +       +L     K      ++  + L    A    +   +  + T  G L++
Sbjct: 76  LTNQRVEVAKDTIVLRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 135

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +F  + S      +V + K+ + L  + +  + + G+TD++        N  
Sbjct: 136 FGD----VLFATNKSDLKSSGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 188

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           LS  RA S  + L + GV   RI    G+        +      + NRR+++ + +
Sbjct: 189 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 243


>gi|76819156|ref|YP_337240.1| hypothetical protein BURPS1710b_A2089 [Burkholderia pseudomallei
           1710b]
 gi|237509287|ref|ZP_04522002.1| type IV / VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
 gi|254198855|ref|ZP_04905273.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|254264296|ref|ZP_04955161.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|76583629|gb|ABA53103.1| OmpA domain protein [Burkholderia pseudomallei 1710b]
 gi|169657027|gb|EDS88421.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|235001492|gb|EEP50916.1| type IV / VI secretion system protein, DotU family [Burkholderia
           pseudomallei MSHR346]
 gi|254215298|gb|EET04683.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 571

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507


>gi|153834458|ref|ZP_01987125.1| outer membrane protein OmpA [Vibrio harveyi HY01]
 gi|148869154|gb|EDL68186.1| outer membrane protein OmpA [Vibrio harveyi HY01]
          Length = 318

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F  +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L++ G+   RI    G   +    +++       NRR++++V
Sbjct: 262 AESVAHALVEKGIDASRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309


>gi|115360943|ref|YP_778080.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115286271|gb|ABI91746.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 239

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S++        L K+   L    +     + + G+TDA+     A  N  LS  RA
Sbjct: 137 FATDSAVLTSAATAALDKL---LNQQGDRHFARVDVDGYTDAT---GSAAHNQALSKRRA 190

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +    L + G+  D     +G        ++D     + NRR++I ++
Sbjct: 191 DAVAAYLREHGLKAD-AFAATGHGEANPAASNDTAEGRARNRRVEISLQ 238


>gi|260768264|ref|ZP_05877198.1| outer membrane protein [Vibrio furnissii CIP 102972]
 gi|260616294|gb|EEX41479.1| outer membrane protein [Vibrio furnissii CIP 102972]
          Length = 176

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +Q + E L       I I+G+T           N  LS  RA +
Sbjct: 56  LFANDSYEINPVFADQIQAMAEFLKTYQSASIEIQGYTSKV---GTNEYNQELSQKRAEA 112

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
             + L+  G+S  R+ +I GF   RL    D  +  + NRR+ 
Sbjct: 113 VERKLLSYGISPKRV-RIIGFGETRLLDDGDTNSAHAVNRRVT 154


>gi|254462893|ref|ZP_05076309.1| OmpA family protein [Rhodobacterales bacterium HTCC2083]
 gi|206679482|gb|EDZ43969.1| OmpA family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 219

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L++    +         + GH DA         N  L L RAY+ 
Sbjct: 81  FAFGSAQLDAGAHDTLREQAAWIRQFPEVRFRVYGHADAV---GGNASNKSLGLQRAYAV 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L  +G+ + R+  +S F   +  I S+     NRR
Sbjct: 138 VNFLAANGIGKSRLEAVSSFGEEQPLIVSEGRERRNRR 175


>gi|84394243|ref|ZP_00992970.1| Outer membrane protein [Vibrio splendidus 12B01]
 gi|84375118|gb|EAP92038.1| Outer membrane protein [Vibrio splendidus 12B01]
          Length = 356

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            +  +  MF  +S+    +  + L  + EVL       +++ GHTD++     A  N  +
Sbjct: 228 TESYSQEMFATNSTELSTDGKIALMPLVEVLKAHPQSSVAVVGHTDST---GAAEYNLMI 284

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           S  RA +    + + G+  DRI+  SG        ++      + NRR+D
Sbjct: 285 SKKRAAAVAAYIEEQGIEADRITA-SGEGEENPIASNATAEGRAQNRRVD 333


>gi|260900780|ref|ZP_05909175.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308108014|gb|EFO45554.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
          Length = 205

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     +  N  LS  RA
Sbjct: 82  RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +  + L+++G++ DR++ I G+    L      +  ++ NRR+   V   +G
Sbjct: 139 ENVRKALLQNGIAPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190


>gi|163866824|gb|ABY47582.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 337

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331


>gi|332707360|ref|ZP_08427410.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L]
 gi|332353851|gb|EGJ33341.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L]
          Length = 287

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F++S S   PE  ++L KI   L       I I  HTD       A++N  LS +RA +
Sbjct: 185 LFEESKSTLRPEAGLILDKIVTDLQAYPSSTIRIAIHTDN---PREAKENRNLSFERAKA 241

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
             Q L  +     R   I G+   R  +A+D       NRR++I V+
Sbjct: 242 VQQYLSSALDDSYRWL-IIGYGETRPLVANDTEVNQQRNRRVEIAVD 287


>gi|313887354|ref|ZP_07821045.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|332299263|ref|YP_004441184.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|312923273|gb|EFR34091.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176326|gb|AEE12016.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 225

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R++   K++   L          G   ET   G  I ++      +F+ SSS     +  
Sbjct: 72  RMEKQKKELEQQLPA--------GTQVETVNEGQAIKVVFDSG-LLFNTSSSTLSSSSRN 122

Query: 251 VLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            L+K  + L  + + +  I GHTD+       R N  LSL+RA S    L   GVS  R+
Sbjct: 123 DLRKFADNLNKNDDTVLEIIGHTDS---SGNDRINDPLSLNRAKSVRDFLEGQGVSSVRM 179

Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
            K  G   H     +        NRR+++ +   Q
Sbjct: 180 -KYEGRGSHEPVDTNATAEGKRKNRRVEVFILPSQ 213


>gi|254355979|ref|ZP_04972256.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|148024962|gb|EDK83131.1| OmpA family protein [Burkholderia mallei 2002721280]
          Length = 560

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295
           FD   +    + +  ++++G   A     + + GHTD+ P R +   DN  LS  RA + 
Sbjct: 384 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 443

Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              L K+ +            R  + SG    +    +    +   NRR+D+L
Sbjct: 444 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 496


>gi|153837358|ref|ZP_01990025.1| putative protein F-related protein [Vibrio parahaemolyticus AQ3810]
 gi|308094490|ref|ZP_05889709.2| OmpA family protein [Vibrio parahaemolyticus AN-5034]
 gi|149749273|gb|EDM60052.1| putative protein F-related protein [Vibrio parahaemolyticus AQ3810]
 gi|308090642|gb|EFO40337.1| OmpA family protein [Vibrio parahaemolyticus AN-5034]
          Length = 225

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             K+  +  +      S   +    R  +    A+K S+ ++ L        +  ET   
Sbjct: 49  APKTNTELRHPEWGYASASHVSTAPRVNQTARAAEKKSNNVTSLEMFLDRHNIPHETIGG 108

Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
           G ++I + +Q +   F   S+     +   L+K+G  LA  +   + I GH D++   + 
Sbjct: 109 GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 165

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
                 LS  RA    + ++ S +   R+    GF  +  +   A+    + NRR+++++
Sbjct: 166 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 221


>gi|91227007|ref|ZP_01261544.1| putative protein F-related protein [Vibrio alginolyticus 12G01]
 gi|91188809|gb|EAS75095.1| putative protein F-related protein [Vibrio alginolyticus 12G01]
          Length = 224

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 11/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             KS  +  +      S   + +  R  +    + K S  ++ L        +  ET   
Sbjct: 48  APKSNTELRHPEWGYPSASNVASSPRSYQTARASVKKSQNVTSLEMFLSRHNIPHETLSG 107

Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
           G ++I + +Q +   F   S+    ++   ++ IG  LA  +   + I GH D++     
Sbjct: 108 GHLMIRLKEQVH---FQTGSARLSAQSQDWIRNIGHYLAGRTDVDVVIDGHADST---GA 161

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              N  LS  RA    + L+ + +   R+    GF  +  K ++   +    NRR+++ +
Sbjct: 162 ESFNDTLSEKRAREVEKQLLATSIPRQRVFS-RGFGEYVPKCSNATASGKACNRRVELTL 220


>gi|194337429|ref|YP_002019223.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309906|gb|ACF44606.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 337

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     PE+   L++I  +L       + + GHTD          N  LS  RA + 
Sbjct: 235 FDPNKWDIKPESRPALKEIAILLNKQPTLRLHVVGHTDNV---GGYEANTVLSKRRAEAV 291

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L+K  G+S  R++  +G A+     ++  +   + NRR++++
Sbjct: 292 AASLVKDFGISALRLTA-NGAAYLAPVASNSTEAGRAKNRRVELV 335


>gi|157164740|ref|YP_001466195.1| outer membrane fibronectin-binding protein [Campylobacter concisus
           13826]
 gi|112801501|gb|EAT98845.1| outer membrane fibronectin-binding protein [Campylobacter concisus
           13826]
          Length = 337

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
           +I + D      FD  S    P+    ++K+ + +       + + GHTD+         
Sbjct: 225 VIVLRDLDVNFAFD--SYKVGPKYAAEIKKVADFMGEHPDYKVVLAGHTDSV---GAEAY 279

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           N +LS  RA +  +VL   GV + +IS + G+   +    +      + NRR++
Sbjct: 280 NQKLSEKRAKAVAEVLAGYGVEKAKISTV-GYGELKPIATNKTKEGRAQNRRVE 332


>gi|146301218|ref|YP_001195809.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146155636|gb|ABQ06490.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 645

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           + ++D +    FD       P+ I  L K+  ++       I I  HTD+   R     N
Sbjct: 526 VEMVDVQ-PIYFDYDKYDITPKAIEELTKVVFIMQKFPNIKIKIESHTDS---RGKDSYN 581

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337
            +LS +RA S    ++  G+   RI    G+   RL          ++  +  NRR D +
Sbjct: 582 LKLSDNRAKSTRDYILSQGIDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDFI 641

Query: 338 VEDR 341
           +  +
Sbjct: 642 IIQK 645


>gi|7532784|gb|AAF63228.1| outer membrane protein [Acinetobacter sp.]
          Length = 368

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +  R +   N RLSL RA
Sbjct: 250 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 306

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    ++     + NRR+
Sbjct: 307 NSVKSSLVNEYNVDASRL-STQGFAWDQPIADNNTKEGRAMNRRV 350


>gi|332140499|ref|YP_004426237.1| Thrombospondin type 3 repeat:OmpA/MotB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550521|gb|AEA97239.1| Thrombospondin type 3 repeat:OmpA/MotB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 218

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
            IID     + F  +S+  LPE    LQ + + L  +    + I GH         A  N
Sbjct: 99  QIIDSFKVNIEFTSNSTDVLPEYENNLQDVIDALNANPNSGVIIHGHAS---LDGDAAYN 155

Query: 285 WRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
            RLS  RA +   +LM K+ ++  RI+ + G+   R  +   S+  N+ NRRI+
Sbjct: 156 QRLSERRAKAVASLLMTKADIAPRRITAV-GYGESRPLVNEESEAANARNRRIE 208


>gi|218676173|ref|YP_002394992.1| outer membrane protein OmpA [Vibrio splendidus LGP32]
 gi|218324441|emb|CAV25864.1| outer membrane protein OmpA [Vibrio splendidus LGP32]
          Length = 353

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            +  +  MF+ +S+    E    L  + EVL       +++ GHTD++     A  N  +
Sbjct: 225 TESFSQGMFETNSTELSSEGKTALIPLVEVLQAHPQSSVNVVGHTDST---GAAEYNMMI 281

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           S  RA +    + + G++ DRI+  SG        ++      + NRR+D
Sbjct: 282 SKKRAAAVAAYIEEQGIAADRIAA-SGEGEENPVASNATAEGRAQNRRVD 330


>gi|260557183|ref|ZP_05829399.1| outer membrane protein omp38 [Acinetobacter baumannii ATCC 19606]
 gi|75438841|sp|Q6RYW5|OMP38_ACIBA RecName: Full=Outer membrane protein omp38; AltName: Full=Outer
           membrane protein ompA; AltName: Full=Outer membrane
           protein ompAb; Flags: Precursor
 gi|40287452|gb|AAR83911.1| outer membrane protein A [Acinetobacter baumannii]
 gi|260409289|gb|EEX02591.1| outer membrane protein omp38 [Acinetobacter baumannii ATCC 19606]
          Length = 356

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346

Query: 342 Q 342
           Q
Sbjct: 347 Q 347


>gi|269963902|ref|ZP_06178214.1| putative lipoprotein [Vibrio harveyi 1DA3]
 gi|269831389|gb|EEZ85536.1| putative lipoprotein [Vibrio harveyi 1DA3]
          Length = 219

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I G+TD++
Sbjct: 95  VQVERVGENQLLLRMENGIGFSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST 154

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N  LS  RA S  Q L+   V+  R     G+          +    + NRR
Sbjct: 155 ---GSDSYNQTLSERRAESVRQYLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRR 210

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 211 VEIQILPLK 219


>gi|262375710|ref|ZP_06068942.1| type VI secretion system OmpA/MotB [Acinetobacter lwoffii SH145]
 gi|262309313|gb|EEY90444.1| type VI secretion system OmpA/MotB [Acinetobacter lwoffii SH145]
          Length = 217

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P     L K+ +VL   +   I + G+TD++        N  LS  RA S 
Sbjct: 113 FDTNKSNIKPNFYGTLNKVAQVLTEDNQSGILVTGYTDST---GNDSINLPLSQARANSV 169

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L   GVS  RI+   G         +        NRR++I V
Sbjct: 170 ATYLAGQGVSRTRINA-QGLGSANPIADNTTAAGKEQNRRVEIAV 213


>gi|296122828|ref|YP_003630606.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015168|gb|ADG68407.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776]
          Length = 296

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
               G+WK+ YADF+T +MAFFLVMW++     + K A+  YF P             +
Sbjct: 2  AGGGGGAWKVAYADFVTAMMAFFLVMWLVG-QSKEVKTAVAHYFQPPPGAAAAELDPDVE 60

Query: 86 EQNPPERSSQN 96
              P R+   
Sbjct: 61 PSLFPPRAELK 71



 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293
           +F + +       I  L+ +   L      I IRGH       +     D W+LS  R+ 
Sbjct: 87  LFAEKAYALDESAINQLEALLPDLLGKPNKIEIRGHASRRERADTQTKEDPWQLSWMRSQ 146

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338
           +    L+  GV   R+ ++S         A        + N R+++ +
Sbjct: 147 AVKDFLVSKGVELGRL-RLSQDGAEEPYSAKKLDAEHQAQNARVEVFL 193


>gi|184159409|ref|YP_001847748.1| outer membrane protein [Acinetobacter baumannii ACICU]
 gi|332876249|ref|ZP_08444024.1| outer membrane protein Omp38 [Acinetobacter baumannii 6014059]
 gi|183211003|gb|ACC58401.1| Outer membrane protein [Acinetobacter baumannii ACICU]
 gi|322509321|gb|ADX04775.1| Outer membrane protein omp38 precursor [Acinetobacter baumannii
           1656-2]
 gi|323519348|gb|ADX93729.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332735521|gb|EGJ66573.1| outer membrane protein Omp38 [Acinetobacter baumannii 6014059]
          Length = 356

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346

Query: 342 Q 342
           Q
Sbjct: 347 Q 347


>gi|156976618|ref|YP_001447524.1| hypothetical protein VIBHAR_05392 [Vibrio harveyi ATCC BAA-1116]
 gi|156528212|gb|ABU73297.1| hypothetical protein VIBHAR_05392 [Vibrio harveyi ATCC BAA-1116]
          Length = 207

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 14/196 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211
             D+    ++  +  +  +    P            + +  +   +     G+++    +
Sbjct: 19  NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFL 78

Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268
            +  +   T +G  ++I + +Q +   F   S+  L ++   +Q +G  LA  +   + I
Sbjct: 79  NRHQIAHETISGEHLMIRLKEQVH---FQTGSARLLAQSQDWIQSLGHYLAGRTDVDVVI 135

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GH D++   +       LS  RA    + L+ + +   R+    GF  +  + ++   +
Sbjct: 136 DGHADSTGAASFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 191

Query: 329 SA--NRRIDILVEDRQ 342
               NRR+++++   Q
Sbjct: 192 GKACNRRVELMLIVDQ 207


>gi|152988440|ref|YP_001349604.1| hypothetical protein PSPA7_4250 [Pseudomonas aeruginosa PA7]
 gi|150963598|gb|ABR85623.1| probable outer membrane lipoprotein [Pseudomonas aeruginosa PA7]
          Length = 159

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L     + + + GHTD   + +    N +LS  RA
Sbjct: 53  KVLFGNNLDRLNPDSRTTLTKIARALLDVGIDKVRLEGHTDN--YGDEGY-NLKLSERRA 109

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    R    +      S NRR+ I+V
Sbjct: 110 ESVAAVFREAGMPAANIE-VRGLGMSRPVADNKTRAGRSENRRVAIIV 156


>gi|291286826|ref|YP_003503642.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883986|gb|ADD67686.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 368

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS      +  +    + +  S    I I+GH D+   R     N  LS  RA S 
Sbjct: 266 FKTNSSEIDESYVDDIILFVKFMKDSPAINIEIQGHADS---RGTDDYNMVLSEKRAKSV 322

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338
            ++L  K G++E+RI  + G+   +    +D P N   NRRID ++
Sbjct: 323 AKMLTEKYGIAENRI-SVIGYGETKPIAPNDSPENMRKNRRIDTVI 367


>gi|163866832|gb|ABY47586.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 334

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331


>gi|149190355|ref|ZP_01868628.1| outer membrane protein [Vibrio shilonii AK1]
 gi|148835844|gb|EDL52808.1| outer membrane protein [Vibrio shilonii AK1]
          Length = 219

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAH 261
           D   K +  E   +G+ +  +      +       FD +S          L+ +  +L  
Sbjct: 80  DQQEKALRQELLNSGVQVERVGDNQLLLRLENGIGFDSNSHALNSSIHNTLRGVARILVE 139

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                + I G+TD++     A+ N  LS  RA      L+   V+  R     G      
Sbjct: 140 YPNTSLVIEGYTDST---GSAQYNQELSEKRAEQVRSFLISQNVAAGRAVA-RGNGERFP 195

Query: 321 KIASDPMNSA--NRRIDILVEDRQ 342
             ++        NRR++I +   +
Sbjct: 196 ICSNSTPEGRQCNRRVEIKILPLK 219


>gi|37527138|ref|NP_930482.1| hypothetical protein plu3255 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786572|emb|CAE15629.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 575

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 236 MFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +      T V++  +  + A    +I I GHTD++     A  N  LSL RA +
Sbjct: 444 LFDVGQAKLKAGSTKVLVNALINIRAKPGWMILIAGHTDST---GDATKNQVLSLARAEA 500

Query: 295 AYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
               +L  S +S    + + G         +      +ANRR++I
Sbjct: 501 VRDWMLQTSDISPACFT-VQGKGATSPIATNTTAAGRAANRRVEI 544


>gi|332881152|ref|ZP_08448812.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680901|gb|EGJ53838.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 920

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 13/212 (6%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD- 194
               ++     +     +G+       LE +I   E       + E  +    +  L D 
Sbjct: 716 GGHTADANGMPVEAQIRQGEAETDMIPLEPAIEVVEGVLNADGNFEYNVGDLFQLNLFDN 775

Query: 195 --LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
             L    +S+ + LV     K +          I++    +   F   +      +   L
Sbjct: 776 TMLEVGENSSEARLVKLLEDKNLTTSEQFKDNWITL----DRTYFKTGNDELTEGSEQQL 831

Query: 253 QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           + I  +L    +  I + G+TD +     A  N +LS  RA S    L+  G ++ ++S 
Sbjct: 832 KNIVAILKAYPKAAIRLGGYTDNT---GSAEGNLKLSERRANSVLNKLVALGANKAQLSA 888

Query: 312 ISGFAHHR--LKIASDPMNSANRRIDILVEDR 341
               A H       +D   + NRRID+ +  +
Sbjct: 889 QGYGAEHPICPANDTDECKAKNRRIDVRLTAK 920


>gi|269963652|ref|ZP_06177975.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831665|gb|EEZ85801.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 218

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 14/196 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211
             D+    ++  +  +  +    P            + +      +   L G+ +    +
Sbjct: 30  NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYASTPRYVAQAPSAMGKKLQGVTSLEMFL 89

Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268
            +  +   T +G  +++ + +Q +   F   S+    ++   L+ +G  LA  +   + I
Sbjct: 90  NRHQIAHETISGDHLMVRLKEQVH---FQTGSARLSSQSEDWLRNLGHYLAGRTDVDVVI 146

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GH D++           LS  RA    + L+ + +   R+    GF  +  + ++   +
Sbjct: 147 DGHADSTGAATFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 202

Query: 329 SA--NRRIDILVEDRQ 342
               NRR+++++   Q
Sbjct: 203 GKACNRRVELMLIVDQ 218


>gi|160874266|ref|YP_001553582.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|160859788|gb|ABX48322.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|315266500|gb|ADT93353.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 369

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +   +  F   S++        ++++   L  + E  + I GH            N  LS
Sbjct: 251 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 307

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             RA +  Q+L++  G+S+ R++  +G+   +  +A D     +ANRRI+ +V  
Sbjct: 308 DKRADAVAQILVEKYGISQSRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 361


>gi|325123365|gb|ADY82888.1| putative outer membrane protein precursor (OmpA-like)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 347

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +      + N RLSL RA
Sbjct: 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 278

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 279 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 337

Query: 342 Q 342
           Q
Sbjct: 338 Q 338


>gi|299768851|ref|YP_003730877.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter sp.
           DR1]
 gi|298698939|gb|ADI89504.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter sp.
           DR1]
          Length = 347

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +      + N RLSL RA
Sbjct: 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 278

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341
            S    L+ +  V   R+    GFA  +    +      + NRR+         ++V+  
Sbjct: 279 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 337

Query: 342 Q 342
           Q
Sbjct: 338 Q 338


>gi|255035577|ref|YP_003086198.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254948333|gb|ACT93033.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 433

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S   LP +   L+ + +VL  +    + I GHTDA         N +LS+ RA + 
Sbjct: 331 FNVNSDEILPLSYGALKDVAQVLQENPGVKVQIVGHTDAD---GSDESNVQLSMRRAEAV 387

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
            + +     +   R+ +  G        ++D     + NRR++ +
Sbjct: 388 KKAMEAHFAIDGTRL-QTDGKGESSPIDSNDTPTGKANNRRVEFI 431


>gi|167625617|ref|YP_001675911.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167355639|gb|ABZ78252.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 224

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAH 261
           +       +++      TR+G  I I++  N   F    +        VL  +  V L +
Sbjct: 85  VQEAELRKLLQSSGVSVTRSGDNI-ILNMPNDVTFGVDQTDLSQRAQQVLNSVVLVALEY 143

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               +++ G+TD+         N RLS  RA      L    V   R++   G    +  
Sbjct: 144 DETKLNVMGYTDS---SGAESYNLRLSQVRASEVANYLTNHKVPAQRVAS-HGMGESKPI 199

Query: 322 IASDP--MNSANRRIDILV 338
            ++      + NRR++I++
Sbjct: 200 ASNQTKQGRAENRRVEIIL 218


>gi|89068018|ref|ZP_01155435.1| OmpA family protein [Oceanicola granulosus HTCC2516]
 gi|89046257|gb|EAR52314.1| OmpA family protein [Oceanicola granulosus HTCC2516]
          Length = 218

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE   +L      +    E   S+ GHTD          N RL   RA + 
Sbjct: 73  FAFDSANLGPEARAILDVQASWINQFPELRFSVYGHTD---LVGSDAYNRRLGERRARAV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR 333
              L   GVS DR+  +  F   +  +   DP  + NRR
Sbjct: 130 VAYLASRGVSTDRLEALVSFGETQPLVLTQDPERA-NRR 167


>gi|312198597|ref|YP_004018658.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
 gi|311229933|gb|ADP82788.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
          Length = 371

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S++        L  +   L   T    + GHTD++     A  N  LSL RA +A 
Sbjct: 269 FASDSAVLSDRDRAALDLVAAALRAGTAPALVAGHTDST---GPASLNEALSLGRAQAAV 325

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
             L+  GV   R+  + G+   R     A+    +ANRR++I+
Sbjct: 326 GYLVSQGVPAGRLRAV-GYGASRPAADNATPAGRAANRRVEIV 367


>gi|254785076|ref|YP_003072504.1| outer membrane protein and related peptidoglycan-associated
           [Teredinibacter turnerae T7901]
 gi|237687207|gb|ACR14471.1| putative outer membrane protein and related
           peptidoglycan-associated [Teredinibacter turnerae T7901]
          Length = 472

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 17/208 (8%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q SE    ++    ++        D  K+   + +     L  +  +  +R K+ ++  
Sbjct: 273 DQGSEVPVAAIINRIQQLTADSHELDELKARYAQLDQEFAALETKVGIQSERLKQEEEAR 332

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +++         D      +  +    +LI ++       FD  S+        +LQK+ 
Sbjct: 333 ERLRRVSDYFRRDEA----MVLSQGDNVLIRMVGLN----FDPGSAQVNASNYALLQKVE 384

Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--KSGVSEDRISKIS 313
           + +       + + GHTD+       + N  LS DRA +  Q L+   + ++   I    
Sbjct: 385 QAVRMYPGYTVVVEGHTDSF---GSTQANQTLSEDRANAVRQYLLVNMNDLAAGAIEA-Y 440

Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339
           G+   +    ++       NRRID+L++
Sbjct: 441 GYGESQPIANNETREGRKRNRRIDVLLK 468


>gi|78484555|ref|YP_390480.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78362841|gb|ABB40806.1| OmpA family protein [Thiomicrospira crunogena XCL-2]
          Length = 314

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD  S    P+   +L K    L    +   I I G TD+         N +LS +RA +
Sbjct: 186 FDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSL---GSESSNLKLSWNRAQA 242

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
               L++        I  + G         +        NRRI  ++ D+Q
Sbjct: 243 TKDYLVRKFKYDPASIL-VLGKGEANPVATNKTKEGRKQNRRISFMIMDQQ 292


>gi|283782254|ref|YP_003373009.1| OmpA/MotB domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283440707|gb|ADB19149.1| OmpA/MotB domain protein [Pirellula staleyi DSM 6068]
          Length = 282

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
                  +   +     Q+      +         Q   +  +   + ++  +   +  D
Sbjct: 30  QGAFQPPAGTAQSNVFQQQSTALNSQVQDLTRRVGQLDLNNADLHRQLAQADQLKQQYAD 89

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--------ISSTLSGLVADNIVKG 214
               + K+       L + +    +  K++Q L           I +  S   + + V+ 
Sbjct: 90  QVSLLQKQLGDMASRLKETQTAKAEIDKQVQTLQASTRFRGGASIQANSSATNSLSTVQI 149

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTE-VISIRGHT 272
              +  + G +I I +     +F   S  P  E   ++ ++   ++       I I GHT
Sbjct: 150 PGIDVRQDGSVIRI-ELPADKLFVTGSLQPTLEAQRIIDEVATAIIRSYPRQRIVIEGHT 208

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330
           D +   N A  +  L+ +++ + +Q L++      R   I+    +    ++  +   + 
Sbjct: 209 DNAQAGNPAGAHL-LAYNQSQAVFQQLVQRNSIPVRQLAIAAMGENHPLASNGTEQGRAK 267

Query: 331 NRRIDILV 338
           NRRI+I+V
Sbjct: 268 NRRIEIVV 275


>gi|260575964|ref|ZP_05843959.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259021890|gb|EEW25191.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 650

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L  + EVL    +  + I GHTDA         N  LS  RA + 
Sbjct: 503 FAPGSAEIAASAGKTLDALAEVLIKCPDLRLEIGGHTDAQ---GSTEGNRALSQARAEAV 559

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
              L         ++ + G+   +    +  D    ANRRI+
Sbjct: 560 LLGLQGRRAPVAGLTAV-GYGEDKPLADNGTDEGREANRRIE 600


>gi|126741160|ref|ZP_01756841.1| OmpA/MotB domain protein [Roseobacter sp. SK209-2-6]
 gi|126717797|gb|EBA14518.1| OmpA/MotB domain protein [Roseobacter sp. SK209-2-6]
          Length = 140

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    +    L  +   +   T  +  I GHTD+      A+ N RLSL RA   
Sbjct: 39  FDFDSATLRSDQKPKLANMCTSMKAMTGTVFQIIGHTDS---SGSAKYNERLSLLRAQEV 95

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L+ S GV+E+ +  I G         +DP    NRR++
Sbjct: 96  RRHLISSCGVAENSLRAI-GMGETAPFNQNDPRADENRRVE 135


>gi|126732859|ref|ZP_01748650.1| OmpA family protein [Sagittula stellata E-37]
 gi|126706635|gb|EBA05709.1| OmpA family protein [Sagittula stellata E-37]
          Length = 227

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              +   +   V    T   +   I+      +F   S+      +  +Q + + +    
Sbjct: 92  EAELRQQLGSQVDIRNTGDRL---IVTMPQDILFATDSATLSGGLLGDIQDVAQSVLRYP 148

Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
              + I GHTD+      A  N  LS  RA +   V +   V   RI ++ G    +   
Sbjct: 149 NTTTQIIGHTDSD---GDAAYNLSLSQRRAQAVANVFLAQNVPSSRI-QVIGRGEDQPIA 204

Query: 323 AS--DPMNSANRRIDILVED 340
           ++        NRR++I++  
Sbjct: 205 SNLTPQGKQQNRRVEIVILP 224


>gi|115352534|ref|YP_774373.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115282522|gb|ABI88039.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 232

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  + ++  S+ G+TD++     A+ N  LS +RA S 
Sbjct: 125 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDST---GSAQLNQTLSQNRAQSV 181

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L + GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 182 VNALAQRGVAGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 229


>gi|227540101|ref|ZP_03970150.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239962|gb|EEI89977.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 671

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   S    +   VL ++   L  +    I +  HTD+   R  A+ N +LS +RA SA
Sbjct: 563 YDLDKSNIREDAKPVLNQLVHTLRDNPSLKIELSSHTDS---RATAKYNMKLSQNRAQSA 619

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSANRRIDILVED 340
              ++  G++ +RI    G+   RL          +D  + ANRR +I V +
Sbjct: 620 VDYIVSQGIARNRIIA-KGYGESRLINMCKDGVKCTDAEHQANRRTEIKVLE 670


>gi|302341627|ref|YP_003806156.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
 gi|301638240|gb|ADK83562.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075]
          Length = 361

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  PE+   LQ+I  +LA      I + GHTD          N  LS  RA + 
Sbjct: 259 FDFDKAVVKPESRPTLQEIAALLAADPALEILVVGHTDNQ---GGFAYNVELSQRRAQAV 315

Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
            + L    GV+  R++   +G A       S+   + NRR++++
Sbjct: 316 VKALTGDFGVAPGRLTPFGAGMAAPTASNDSEEGRAKNRRVELV 359


>gi|193885364|pdb|3CYP|B Chain B, The Crystal Structure Of The C-Terminal Domain Of
           Helicobacter Pylori Motb (Residues 125-256).
 gi|193885365|pdb|3CYP|C Chain C, The Crystal Structure Of The C-Terminal Domain Of
           Helicobacter Pylori Motb (Residues 125-256).
 gi|193885366|pdb|3CYP|D Chain D, The Crystal Structure Of The C-Terminal Domain Of
           Helicobacter Pylori Motb (Residues 125-256).
 gi|193885367|pdb|3CYP|E Chain E, The Crystal Structure Of The C-Terminal Domain Of
           Helicobacter Pylori Motb (Residues 125-256).
 gi|193885368|pdb|3CYQ|B Chain B, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885369|pdb|3CYQ|C Chain C, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885370|pdb|3CYQ|D Chain D, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885371|pdb|3CYQ|E Chain E, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885372|pdb|3CYQ|F Chain F, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885373|pdb|3CYQ|G Chain G, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885374|pdb|3CYQ|H Chain H, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885375|pdb|3CYQ|I Chain I, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885376|pdb|3CYQ|A Chain A, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885377|pdb|3CYQ|J Chain J, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885378|pdb|3CYQ|K Chain K, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885379|pdb|3CYQ|L Chain L, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885380|pdb|3CYQ|M Chain M, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885381|pdb|3CYQ|N Chain N, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885382|pdb|3CYQ|O Chain O, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|193885383|pdb|3CYQ|P Chain P, The Crystal Structure Of The Complex Of The C-Terminal
           Domain Of Helicobacter Pylori Motb (Residues 125-256)
           With N-Acetylmuramic Acid
 gi|302148709|pdb|3IMP|B Chain B, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148710|pdb|3IMP|C Chain C, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148711|pdb|3IMP|D Chain D, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148712|pdb|3IMP|E Chain E, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148713|pdb|3IMP|A Chain A, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148714|pdb|3IMP|F Chain F, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148715|pdb|3IMP|G Chain G, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148716|pdb|3IMP|H Chain H, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148717|pdb|3IMP|I Chain I, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148718|pdb|3IMP|J Chain J, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148719|pdb|3IMP|K Chain K, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
 gi|302148720|pdb|3IMP|L Chain L, New Crystal Form Of The C-Terminal Domain Of Helicobacter
           Pylori Motb (Residues 125-256)
          Length = 138

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQ 297
           S     + ++ +++I +++    +   I++RG TD +P  +   + ++ L+ +RAY   +
Sbjct: 12  SDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMK 71

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           VL++ GV+ +++   S +        +D       N R++I 
Sbjct: 72  VLIQYGVNPNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 112


>gi|91785192|ref|YP_560398.1| OmpA family outer membrane protein [Burkholderia xenovorans LB400]
 gi|91689146|gb|ABE32346.1| outer membrane protein, OmpA family [Burkholderia xenovorans LB400]
          Length = 267

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S++  P     L               + + G+TDA+        N  LS  RA +
Sbjct: 164 FATDSAVLSPIAKKNLDDFMRA-NQGVNLHRVMVVGYTDAT---GSEAHNLNLSQARAAA 219

Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             Q L   G+  ++ +++  G A      A+      NRR+D+ V 
Sbjct: 220 VVQYLRDGGLRAEQFVARGLGSADPVASNATAEGRMQNRRVDVRVL 265


>gi|172061391|ref|YP_001809043.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171993908|gb|ACB64827.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 215

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     P    +L  +   L  + ++  S+ G+TD++     A+ N  LS +RA S 
Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDST---GSAQLNQTLSQNRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              L + GV+  R+S   G          A++   + NRR++I +   Q
Sbjct: 165 VNALAQRGVAGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 212


>gi|87121335|ref|ZP_01077225.1| probable outer membrane protein [Marinomonas sp. MED121]
 gi|86163492|gb|EAQ64767.1| probable outer membrane protein [Marinomonas sp. MED121]
          Length = 298

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
           R+  +F ++  +        L  +   +A+   V  I I GHTD+       RDN  LS 
Sbjct: 187 RSAVLFPENGVLLSTRMKDRLDLVALYVANDPSVEYIYIDGHTDSL---GSRRDNRELSK 243

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVE 339
            RA +    L++ GV  ++I                +      NRR+ I +E
Sbjct: 244 QRAEAVTAYLLEQGVEVEKIIS-RYHGERYPTIDNKTRANRERNRRVTIRLE 294


>gi|329964410|ref|ZP_08301491.1| OmpA family protein [Bacteroides fluxus YIT 12057]
 gi|328525459|gb|EGF52507.1| OmpA family protein [Bacteroides fluxus YIT 12057]
          Length = 252

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS    E    L+++ ++L       I+I GHTD          N ++S +RAYS
Sbjct: 140 LFAFNSSALSNEAKSSLRELAQILKEDPTTDIAIIGHTDKV---GTYEANMKVSKNRAYS 196

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L   GVS  +  K+ G  +       +     NRR++I
Sbjct: 197 VENYLQDCGVSPAQFKKVEGVGYTE--YDDNLSADQNRRVEI 236


>gi|317486290|ref|ZP_07945122.1| OmpA family protein [Bilophila wadsworthia 3_1_6]
 gi|316922460|gb|EFV43714.1| OmpA family protein [Bilophila wadsworthia 3_1_6]
          Length = 340

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        PE   +L +   ++       + + G TD+      A  N +LS  RA + 
Sbjct: 239 FAFDKYDLTPEAQGILNEAARIIMEHPNMKVQLLGWTDS--IGTDAY-NLKLSQRRADAV 295

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              L+  GV   R+  I      R    ++     NRR +++  D
Sbjct: 296 KNYLVAQGVPASRMIAIGKGKSFRYDNNTEEGRYMNRRTELVFMD 340


>gi|221196013|ref|ZP_03569060.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221202687|ref|ZP_03575706.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221176621|gb|EEE09049.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221182567|gb|EEE14967.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 405

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R      LA+ +   L   VA   V+ +            ++  R   MF   +   
Sbjct: 252 EAQRLSPFDALARNLERRLRDEVAAGNVELIRDPAHH------VLTLRFAGMFVPGAVTV 305

Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A   E  V+ + G+ D++P  +  +  N  +S  RA    ++L+ 
Sbjct: 306 APWGASVVASAGREIASIAEGAVVRVVGYADSAPAGSARQISNQAISEARAEDVARILVA 365

Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +GV      ++ G         +  +   + NRR++++V
Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403


>gi|124003926|ref|ZP_01688773.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123990505|gb|EAY29985.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 489

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L ++  VL    E  + I+GHT          +N +LS DRA      L+K+G++ 
Sbjct: 394 AKAYLNQVVNVLKKYPEIELEIQGHTCD--ISQSEANNQQLSEDRAQKVKAYLVKNGINA 451

Query: 307 DRISKISGFAHHRLKIASDPM--NSANRRIDI-LVEDRQ 342
            R++  +GF   +    +D       NRR+   +V+D++
Sbjct: 452 QRLT-TTGFGSKQPAFPNDDYYNRVRNRRVQFKVVKDKK 489


>gi|110639097|ref|YP_679306.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281778|gb|ABG59964.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 648

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269
           +   V+ + T T   I+  +   T  F+ + +    E    L ++G  L  H    + I 
Sbjct: 521 VKDSVIHKVTDTIKTIAAAEIAKTVYFESNRADLNAEAKTELNQLGIYLDTHKEANVYIS 580

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH DA    + A +N  LS  RA +A   L   G+S  RI K+  F   +    +     
Sbjct: 581 GHADA--LGSAAINN-ALSQKRAQAAAVYLKAKGISAARI-KVESFGSEKPVETNATVEG 636

Query: 328 NSANRRIDILVE 339
            + NRR+ I+V+
Sbjct: 637 RAKNRRVQIVVK 648


>gi|163866826|gb|ABY47583.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 343

 Score = 70.3 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331


>gi|94311184|ref|YP_584394.1| OmpA/MotB [Cupriavidus metallidurans CH34]
 gi|93355036|gb|ABF09125.1| putative outer membrane lipoprotein [Cupriavidus metallidurans
           CH34]
          Length = 167

 Score = 70.3 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   F  T  G    ++   +  +F         E    L ++   L  +  + + + 
Sbjct: 41  VLKNQGFMLTGNG--WELV-MPDKVLFGFDDDTVSAEQQNALARVARTLRDAGIDALRVD 97

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD          N +LS+ RA +  +VL+  G + D +  + GF   R    +     
Sbjct: 98  GHTDNV---GTIEYNQQLSMRRAEAVARVLLTCGFARDHLD-VRGFGKTRPIADNGTALG 153

Query: 328 NSANRRIDILV 338
            + NRR+ I+V
Sbjct: 154 RAENRRVAIIV 164


>gi|330899613|gb|EGH31032.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 133

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 3   NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYT 61

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++      + 
Sbjct: 62  DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVNGRAQ 117

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 118 NRRVEVNLKPIPG 130


>gi|129307154|gb|ABO30515.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 340

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    +      + NRR+
Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331


>gi|88860422|ref|ZP_01135060.1| putative Component of sodium-driven polar flagellar motor
           [Pseudoalteromonas tunicata D2]
 gi|88817620|gb|EAR27437.1| putative Component of sodium-driven polar flagellar motor
           [Pseudoalteromonas tunicata D2]
          Length = 290

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           SS    E+   L KIGE L +   +  + I  +TD+         N  LS  RA +    
Sbjct: 190 SSELTKESKKRLDKIGEYLKNDPNIESVLISAYTDSY---GGRYTNDELSKKRALTIKTY 246

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           + + GV + R+  + GF   R    +        NRR+ I +
Sbjct: 247 MTELGVEDKRVE-VEGFGEKRHIAPNTTILGRQLNRRVVIQI 287


>gi|254450200|ref|ZP_05063637.1| OmpA domain protein [Octadecabacter antarcticus 238]
 gi|198264606|gb|EDY88876.1| OmpA domain protein [Octadecabacter antarcticus 238]
          Length = 656

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  SS+     +I  +  +  V+   A +   + + GHTD+         N  LS DRA 
Sbjct: 545 FLSSSARLDATSIRTINALAAVVLPCAAADLTLEVGGHTDS---SGDELTNNALSQDRAN 601

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +    L+  GV E+ ++   GF   +     A+    +ANRR DI
Sbjct: 602 AVRAALIVRGVPENAMTA-FGFGPTQPITDNATPEGRAANRRTDI 645


>gi|183984604|ref|YP_001852895.1| outer membrane protein a OmpA [Mycobacterium marinum M]
 gi|183177930|gb|ACC43040.1| outer membrane protein a OmpA [Mycobacterium marinum M]
          Length = 332

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P++  VL ++ + L    +  +++ G+TD          N  LS  RA + 
Sbjct: 231 FGNDGVSLTPDSNKVLTQVVDKLRACPDAKVTVNGYTDN---SGSEGLNIPLSAQRAQTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L+  GV  D I+   G        ++D       NRR++I+V
Sbjct: 288 ADFLVAHGVPTDHITA-KGLGSANPIASNDTAEGRIKNRRVEIVV 331


>gi|323698017|ref|ZP_08109929.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323457949|gb|EGB13814.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 240

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           +       + +++   R    FD +S    PE+   L +IG+V+  S  ++ + G  D S
Sbjct: 117 VVREAPGRVRVTL---RGDLFFDGNSGRLKPESAAYLDEIGDVVRLSVGLVHVIGFADQS 173

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANR 332
                   ++ LS +RA S    L+   G+   R+  I+G   ++ ++        + NR
Sbjct: 174 --EAEGSSSFTLSSERAASVADQLITRLGIEPKRLV-ITGRGAYQPELPDTSAANQTLNR 230

Query: 333 RIDILVED 340
           R++I++ +
Sbjct: 231 RVEIVIAN 238


>gi|153870010|ref|ZP_01999498.1| OmpA/MotB [Beggiatoa sp. PS]
 gi|152073520|gb|EDN70498.1| OmpA/MotB [Beggiatoa sp. PS]
          Length = 296

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L+ +         + I + GHTD+         N +LS  RA S 
Sbjct: 189 FAFDKAALTPQAKTTLEGLINEFGLDFIKGIEVIGHTDSI---GKDSYNQKLSEQRAASV 245

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            + L    V+  +I+   G         +D     + NRR++I +E  Q
Sbjct: 246 VRYLQVLNVNTSKING-WGEGERNPVAPNDTREGRAQNRRVEIKIEPFQ 293


>gi|325277836|ref|ZP_08143389.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324097047|gb|EGB95340.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 830

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 24/163 (14%)

Query: 196 AKKISSTLSGLVADNI-----VKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLP 246
           A +I  T    + DN       +  +       +  I  I   +  +F    +       
Sbjct: 668 ADQIRETDVPRILDNAFLISSSRNYIDSLRAQSLRAIETITLESDTLFAFGRADFQSLKS 727

Query: 247 ETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           E    L  I   L ++     I I GH D       ++ N ++S  RA +    L+  GV
Sbjct: 728 EGQNQLSAIASKLLNTPNIGKIVISGHADQL---GDSQSNLQVSKQRAQTIRTYLVGKGV 784

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
             + +    G    +  +  D   +          NRR++I V
Sbjct: 785 PAELVVA-QGEGSRKPLVNCDMQQARAQLIKCLEPNRRVEIEV 826


>gi|315186730|gb|EFU20488.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 826

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 83/263 (31%), Gaps = 21/263 (7%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
               L +        V +K             +  + ++   +     ++     + K +
Sbjct: 569 ESAPLPVWVDTVPPEVSVKTEPVPFSPDGDGRDEVVAFIPEVRDESGIESWELVIANKDR 628

Query: 156 DLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
               S D E       + +F      E+         + DL   ++   + +V D     
Sbjct: 629 KQTFSEDGEPPARIVWDGFFESGDLAEQAHDYPVAFTVTDLGGNVAKASALVVTD----- 683

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV----VLQKIGEVLAHST-EVISIR 269
           V       G  IS+ D    P     +     E        L ++  +L       + + 
Sbjct: 684 VYVVIKDGGAYISVPDIHFAPFTADYTDKVPSEIREENLRTLDEVAAMLKKFPQYTVQLE 743

Query: 270 GHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           GH  +  + +  R           LS  RA +  + L+  GV   R+  I G+   R  +
Sbjct: 744 GHAVSLLWFDPERAKVEHQEVLVPLSRARAEAVRKALISRGVDPSRL-SIVGYGGSRPIV 802

Query: 323 ASDPMNSA--NRRIDILVEDRQG 343
               +     NRR++ L++++ G
Sbjct: 803 PFSDLKKRWVNRRVEFLLKEKSG 825


>gi|260426127|ref|ZP_05780106.1| OmpA domain protein [Citreicella sp. SE45]
 gi|260420619|gb|EEX13870.1| OmpA domain protein [Citreicella sp. SE45]
          Length = 649

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 10/265 (3%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           I +  N         +       +           T       R  ++  Y +     + 
Sbjct: 345 IPEASNQGPPEFTATLSPEGSVQLRGRVHSEIARQTADSFARARFGSDAVYTAARVDPDL 404

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             N   R     + L + ++    +  +              A         L +     
Sbjct: 405 PANWSARVLAGLEALGELSNGVVRVTPDMVTVSGNTGSTDANAEISGLLADKLGQGAEFE 464

Query: 203 LSGLVADNIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           ++ L  + +   +   T       ++ I+  R    F+  S+        V+  I E+L 
Sbjct: 465 INVLYQEKLDPTLGIPTPDECEAQIVEIVGDRKIN-FEPGSANLDASAKDVMDDIAELLK 523

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
              +  + I+GHTD+         N +LS DRA +    L    V      ++ G+   +
Sbjct: 524 LCGDIPLEIQGHTDSQ---GRESMNQQLSQDRAQAVLDALRNRRVLTAS-YRVRGYGEEQ 579

Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342
                 ++    ANRRI+  +   +
Sbjct: 580 PIADNKTEEGREANRRIEFRLIRPE 604


>gi|315179972|gb|ADT86886.1| hypothetical outer membrane protein [Vibrio furnissii NCTC 11218]
          Length = 176

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +Q + E L       I I+G+T           N  LS  RA +
Sbjct: 56  LFANDSYEINPVFADQIQAMAEFLKTYQSASIEIQGYTSKV---GTNEYNQELSQKRAEA 112

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
             + L+  G+S  R+ +I GF   RL    D  +  + NRR+ 
Sbjct: 113 VERKLLSYGISPKRV-RIIGFGETRLLDDGDTNSAHAVNRRVT 154


>gi|216263832|ref|ZP_03435826.1| outer membrane protein [Borrelia afzelii ACA-1]
 gi|215979876|gb|EEC20698.1| outer membrane protein [Borrelia afzelii ACA-1]
          Length = 389

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S+ D      F   S   L +    L  I ++
Sbjct: 253 IETEVENYIQEKKIKAISVEKNTKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  + ++D+I    G+ 
Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKIKNKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388


>gi|111114988|ref|YP_709606.1| outer membrane protein [Borrelia afzelii PKo]
 gi|110890262|gb|ABH01430.1| outer membrane protein [Borrelia afzelii PKo]
          Length = 389

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S+ D      F   S   L +    L  I ++
Sbjct: 253 IETEVENYIQEKKIKAISVEKNTKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  + ++D+I    G+ 
Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKIKNKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388


>gi|162454745|ref|YP_001617112.1| OmpA-domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161165327|emb|CAN96632.1| OmpA-domain outer membrane protein [Sorangium cellulosum 'So ce
           56']
          Length = 129

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 218 ETTRTGILISIIDQRNTPMF-DKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDA 274
           E    G  I I      P+F D       PE+  VL  +  +L    E+  +++ GHTD 
Sbjct: 10  EAVIEGDRIKIA----RPIFYDLDKDEIRPESFSVLDAVANILRTHPEITALTVEGHTDN 65

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPM-NSANR 332
                    N +LS  RA +  + L++ GV+        G+         +D    + NR
Sbjct: 66  Q---GSVEHNIKLSERRANAVVRYLVQRGVATP--MTAPGYGAGAPLCFTNDEGCRAMNR 120

Query: 333 RIDILVEDR 341
           R++  ++ +
Sbjct: 121 RVEFRIKSK 129


>gi|119774051|ref|YP_926791.1| OmpA/MotB [Shewanella amazonensis SB2B]
 gi|119766551|gb|ABL99121.1| OmpA/MotB [Shewanella amazonensis SB2B]
          Length = 368

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS+  P +   ++K+   +       + I GH  AS   N    N  LS  RA +A
Sbjct: 257 FANNSSVINPSSYESVEKLANYMNQHPGSTVEIGGH--ASNVGNPDY-NMTLSEKRANAA 313

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            ++L++  G+S +R++   G+   R  +  +     +ANRR++ +V
Sbjct: 314 AKLLVEKYGISANRVTA-KGYGITRPVMDGNTAEAHAANRRVEAVV 358


>gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823 [Janthinobacterium sp. Marseille]
 gi|151282426|gb|ABR90836.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1376

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIA 281
           S+ + +   +F    +   P     L  +   +           I++ GHTD       A
Sbjct: 85  SLQEAKGLSLFVSGKADLTPSAKESLDALVAEIHARKGVIAGMRIAVVGHTDNQGLSPNA 144

Query: 282 R----DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           +    DN  LS  RA +    L ++  +      I G    +   ++      S NRR+ 
Sbjct: 145 KRIFTDNQGLSEARALTVAAYLKQALNNPAITYSIDGKGESQPLASNATPEGMSRNRRVA 204

Query: 336 ILV 338
           + V
Sbjct: 205 LQV 207


>gi|126663141|ref|ZP_01734139.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria
           bacterium BAL38]
 gi|126624799|gb|EAZ95489.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria
           bacterium BAL38]
          Length = 520

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277
            T   I+I          FD + S    E+ + L KI EVL ++  + I+I  HTD+   
Sbjct: 404 VTDDTIVIE------NIYFDFNKSTVKKESELSLNKIVEVLTNNANMSITINAHTDS--- 454

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRR 333
           +     N +LS  RA +AYQ L+K G+   +++   G+    L       +   + ANRR
Sbjct: 455 KGSEAYNQKLSESRAKAAYQYLLKKGIPASQLT-YKGYGESELLEKCEKCTASQDQANRR 513

Query: 334 IDILV 338
           I+  +
Sbjct: 514 IEFKI 518


>gi|114562313|ref|YP_749826.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333606|gb|ABI70988.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 225

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K      TR G  I +    N   F    ++       VL  +  V     +  +++ G
Sbjct: 96  LKSTGVSVTRNGDNIVLN-MPNEVTFAVDQTVLSSRAKSVLNSVVLVAKEYDDTRLNVIG 154

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328
           +TD+         N RLS  RA    Q +    VS  R+S  +G        ++      
Sbjct: 155 YTDS---SGSDSYNLRLSQVRASEVAQYMTSQKVSGSRVSS-TGMGESSPIASNSTEQGR 210

Query: 329 SANRRIDILVED 340
           S NRR++I++  
Sbjct: 211 SQNRRVEIVLTP 222


>gi|152984447|ref|YP_001351357.1| flagellar motor protein [Pseudomonas aeruginosa PA7]
 gi|150959605|gb|ABR81630.1| flagellar motor protein [Pseudomonas aeruginosa PA7]
          Length = 254

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 36/187 (19%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234
           M+ +K L++   +    L  L     V+  + +       + GI + + +        N 
Sbjct: 44  MEIQKELKERQVQFEQELVELKKAEQVRRTILDEAVEALRKRGIKVEVSENHTVLSIPND 103

Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283
            + FD  +            +IG+V+               I I GHTD  P +  + + 
Sbjct: 104 LLGFDTGAYDIHAAYQARALEIGKVINEVISREDRVEFLDTIFIEGHTDNRPLQGFMGKG 163

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIASDPMNS--- 329
           NW LS  RA S +Q    +   ++++++           +SG+   R  +          
Sbjct: 164 NWGLSTFRAISLWQFWGSALSPDEQLARLKNKDGKPLFSVSGYGETRPVLVDQQTEDDFK 223

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 224 RNRRIDI 230


>gi|256828444|ref|YP_003157172.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577620|gb|ACU88756.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 198

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    E+  V   I E +       + I GH+D         DN RLSL+RA  A
Sbjct: 97  FEFGRSELTAESKPVPPMIIEAITRRNSRDVRINGHSDTI---GQREDNARLSLERAEGA 153

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
             +L+K G+    I ++       L I    D     NRR+++LV
Sbjct: 154 RDILIKEGIDPS-IMQVFSHGEGNLLIPTADDTPEPRNRRVEVLV 197


>gi|28868377|ref|NP_790996.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967171|ref|ZP_03395320.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301381094|ref|ZP_07229512.1| ompA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062421|ref|ZP_07253962.1| ompA family protein [Pseudomonas syringae pv. tomato K40]
 gi|302133214|ref|ZP_07259204.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851615|gb|AAO54691.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928013|gb|EEB61559.1| ompA family protein [Pseudomonas syringae pv. tomato T1]
 gi|330965011|gb|EGH65271.1| ompA family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331018068|gb|EGH98124.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 229

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIIGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330
           D++      + N  LS  RA S    L   GV +  +  + G    +   ++   N  + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADANGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|256824209|ref|YP_003148169.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Kytococcus sedentarius DSM 20547]
 gi|256687602|gb|ACV05404.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Kytococcus sedentarius DSM 20547]
          Length = 437

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           PM F  SS     E+ V   +IGE LA     + + GHTD+         N RLS  RA 
Sbjct: 335 PMRFPSSSDALYGESAVNAARIGEKLAGCDFDVVVVGHTDSV----GGEVNERLSAFRAE 390

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVE 339
              Q L+ +GV  DRI + +  A   +    ++   + NRR++ILV+
Sbjct: 391 KIAQALVVAGVDFDRIQQSNASASQPIASNETEDGRAKNRRVEILVK 437


>gi|254415575|ref|ZP_05029335.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177756|gb|EDX72760.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
          Length = 727

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE+  VL ++  VL       I ++GHTD  P  + A  N  L+  RA + 
Sbjct: 606 FALDRADISPESAAVLDQVAAVLQEYPFLTIELQGHTD--PRASAAY-NQALARRRALAV 662

Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
              L++ GV   R++ +  G +  R   +     + +RR++I+ +D +G
Sbjct: 663 RNYLLRQGVDPGRMTIRSFGESQRRTTGSGVVDYARDRRVEIIFQDLRG 711


>gi|311748659|ref|ZP_07722444.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Algoriphagus sp. PR1]
 gi|126577188|gb|EAZ81436.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Algoriphagus sp. PR1]
          Length = 643

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   +   P+  V L K+ ++L  +    I +  HTD    R+    N  LS  RA SA
Sbjct: 537 YDLDKADIRPDAAVELDKLVQILKDNPSIKIELSSHTDD---RSSDEYNQDLSQRRAQSA 593

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342
              ++  G+S DR+    G+   +L I +         NRR +  V + Q
Sbjct: 594 VDYIVSQGISADRLVA-KGYGESQLIIENATTEEEHQTNRRTEFKVIEIQ 642


>gi|237806321|ref|ZP_04593025.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027434|gb|EGI07489.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 194

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 60  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 118

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++    
Sbjct: 119 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQTHL-SVRGAGPDQPIASNADVN 174

Query: 327 MNSANRRIDILVEDRQG 343
             + NRR+++ ++   G
Sbjct: 175 GRAQNRRVEVNLKPIPG 191


>gi|254486323|ref|ZP_05099528.1| OmpA/MotB [Roseobacter sp. GAI101]
 gi|214043192|gb|EEB83830.1| OmpA/MotB [Roseobacter sp. GAI101]
          Length = 231

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS        +L++    +         + GHTDA       R N  L L RA S 
Sbjct: 89  FDFNSSQLDAAAQAILRQQANWIRQFPEVRFRVYGHTDAV---GSNRSNKALGLRRARSV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  F   +  I +     ANRR
Sbjct: 146 VAFLTTQGISTSRLEAVVSFGETQPLIVTQGRERANRR 183


>gi|308047841|ref|YP_003911407.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307630031|gb|ADN74333.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 716

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  S+         L ++   LA   +    ++I GHTD+         N  LS  RA 
Sbjct: 53  FDTDSATLSQADQQALTQLAAKLAPMLDGQMALAISGHTDS---AGAEEYNLGLSQRRAQ 109

Query: 294 SAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN--SANRRIDILV 338
           S  Q L    +  ++  +I    F   +   ++D     +ANRR++I +
Sbjct: 110 SVAQFLTS--LMPEQHIRIESRYFGETQPLQSNDSARGMAANRRVEITL 156


>gi|258543922|ref|ZP_05704156.1| lipoprotein PlpD [Cardiobacterium hominis ATCC 15826]
 gi|258520861|gb|EEV89720.1| lipoprotein PlpD [Cardiobacterium hominis ATCC 15826]
          Length = 256

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 236 MFDKSSSIPLPET-IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F   ++   PE    +   + +V AH     + + G TD       A  N  LS  RA 
Sbjct: 142 LFAFDTATLRPEADRALADLLAKVRAHGDTGEVRVDGFTDRL---GSATYNRELSQARAD 198

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
           +    L++ G++  RI + +G    +                    +RR+++ V
Sbjct: 199 AVKNYLVRGGIAASRI-RAAGLGSSQPLAHCADSLPRGELIACLQPDRRVEVTV 251


>gi|261414609|ref|YP_003248292.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371065|gb|ACX73810.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327079|gb|ADL26280.1| putative peptidoglycan-associated lipoprotein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 192

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI---LISIIDQRNTP 235
           SKEK     + +   +     +  L  LVAD +    L       +      + +  N  
Sbjct: 22  SKEKPETDPQPQTAPEAPADSTLNLDALVADTLDADSLARLEAERLEAERARLEELINRI 81

Query: 236 M-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           M     FD   S        +L ++ E+L   +  ++++ GHTDA   R     N  L  
Sbjct: 82  MLEDVYFDYDRSELTENAKRLLAQVAEILVNENRFIVTVEGHTDA---RGTEDYNISLGA 138

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR----RIDI 336
            R+    + L+  GV  +R+  +S +   R K+    +   S NR    R+ I
Sbjct: 139 RRSTVVREFLIAYGVDANRLVSVS-YGKERPKVQGTDETAYSKNRRAHFRVSI 190


>gi|254475411|ref|ZP_05088797.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214029654|gb|EEB70489.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 627

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L +I ++LA      + I+GHTD+         N  LS  RA S 
Sbjct: 499 FEPGSATVAAGSRDTLDQIADILARCDGVRLEIQGHTDSQ---GREEMNQNLSQARAQSV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
              L    +     S   G+        +D      ANRRI+
Sbjct: 556 LNELRDRRIVTSSFSA-KGYGESTPIATNDTEEGREANRRIE 596


>gi|326772136|ref|ZP_08231421.1| OmpA family protein [Actinomyces viscosus C505]
 gi|326638269|gb|EGE39170.1| OmpA family protein [Actinomyces viscosus C505]
          Length = 529

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     +   VL  + E +        ++I GHTD          N  LS  RA +
Sbjct: 247 FATDSDQLSTQADSVLATVVEQIKKYPSGGELTITGHTDDVA---DDAHNQDLSERRAKA 303

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             + L K          +SG      ++ +D       NRR++I +   +
Sbjct: 304 VSERLKKLTDLSAWKESVSGKGESSPRVPNDTDERRQINRRVEITLTPSK 353


>gi|310815074|ref|YP_003963038.1| OmpA domain protein [Ketogulonicigenium vulgare Y25]
 gi|308753809|gb|ADO41738.1| OmpA domain protein [Ketogulonicigenium vulgare Y25]
          Length = 708

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLS 288
             N   FD  S+     ++ V+  + +VL        I + G+TD+      A  N RLS
Sbjct: 502 DENKIAFDPGSAQIAGSSLRVIDAMADVLRGCPVDLPIRVAGYTDSQ---GRAEMNLRLS 558

Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            DRA +    L    V     + +  G A       S+    ANRRI   + + +G
Sbjct: 559 QDRADAVLAALRMRRVPVSSFTAVGFGAADPIASNDSEEGREANRRIAFSLIEEEG 614


>gi|51594942|ref|YP_069133.1| OmpA/OmpF family outer membrane porin [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588224|emb|CAH19831.1| putative OmpA/OmpF family outer membrane porin [Yersinia
           pseudotuberculosis IP 32953]
          Length = 168

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD        E +  +QKIG +L+    + + + GHTD+         N +LS  R
Sbjct: 61  NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+ +  I  + G         +      + NRR+ I++
Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165


>gi|91787678|ref|YP_548630.1| OmpA/MotB [Polaromonas sp. JS666]
 gi|91696903|gb|ABE43732.1| OmpA/MotB [Polaromonas sp. JS666]
          Length = 214

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  PE    L  +   +      + I  GHTD+         N +LS+ R+ +
Sbjct: 105 FFDFDKSVIKPEGKAKLDDLIGKIKDINLEVIIAVGHTDSV---GSDTYNQKLSVRRSEA 161

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
               L+  G+ ++R+    G    +      +    + NRR++I V
Sbjct: 162 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTAEGRAKNRRVEIEV 206


>gi|229588770|ref|YP_002870889.1| putative lipoprotein [Pseudomonas fluorescens SBW25]
 gi|229360636|emb|CAY47494.1| putative lipoprotein [Pseudomonas fluorescens SBW25]
          Length = 261

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           ST      +    N   L  + Q+       T+D+ +  D       +K   K+ +    
Sbjct: 21  STPPNANLENARTNFSALQTNPQATKLAALETKDASEWLDKADKAYRDKEDEKKVDQLAY 80

Query: 177 ------PLSKEKILAMKRKKRLQDLAKKISSTL---SGLVADNIVKGVLFETTRTGILIS 227
                  ++K+ I+  + + +L++   + +  L          +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKDTIVLRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +F  + S      +V + K+ + L  + +  + + G+TD++        N  
Sbjct: 141 FGD----VLFATNKSDLKSSGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           LS  RA S  + L + GV   RI    G+        +      + NRR+++ + +
Sbjct: 194 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248


>gi|144900280|emb|CAM77144.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Magnetospirillum gryphiswaldense MSR-1]
          Length = 319

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD + S   PE   V+ +  +      T  + + GH D        + N  LSL RA +
Sbjct: 217 FFDFNKSDITPEASKVITQAVDTAKKGKTTRVDLTGHADR---SGPDKYNMALSLKRANA 273

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
               ++K G+  D+I  + G       +          NRR++I++
Sbjct: 274 VKAAMVKQGIPADQI-SVVGKGEAVPLVQTPDGVREPQNRRVEIVL 318


>gi|261210838|ref|ZP_05925129.1| outer membrane protein A precursor [Vibrio sp. RC341]
 gi|260840088|gb|EEX66683.1| outer membrane protein A precursor [Vibrio sp. RC341]
          Length = 309

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           + +    +  +F  +SS+ +  +   L+   +VL    +  ++I GHTD+    +   + 
Sbjct: 198 VVVFTSSSEKLFSNNSSLLM--STKSLEGPLDVLKKDPKLKVNIVGHTDS--LGSDKYNQ 253

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
           W +S  RA +     + +G+S  RI+ + G         ++     + NRR++I
Sbjct: 254 W-MSERRAKTVADYFIANGISPSRITAL-GRGESEPIANNNSELGRAQNRRVEI 305


>gi|71064857|ref|YP_263584.1| OmpA family outer membrane protein [Psychrobacter arcticus 273-4]
 gi|71037842|gb|AAZ18150.1| possible outer membrane protein, OmpA family [Psychrobacter
           arcticus 273-4]
          Length = 533

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 73/189 (38%), Gaps = 15/189 (7%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           KG  +  +     ++NK  +          ++A        ++A  ++++ + +  DN+ 
Sbjct: 306 KGDTITVNAADTAALNKLVSDLQAAAPAMTVIAEGPLNEQTEIADSLTASEAAM--DNLG 363

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
           +          + + +++      F+   ++       +L +  +++     + + I GH
Sbjct: 364 QNPDPRDVARALSLQVVN------FEVDKALIPDANKALLDRAVKLMEQVPNMTLMIIGH 417

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329
           TD +   + A  N +LS +RA +    L+  G    ++    G         +  D    
Sbjct: 418 TDKT--ADAAY-NLKLSEERAQAMKAYLVAQGADPSKLM-TKGMGETDPIADNTTDQGRF 473

Query: 330 ANRRIDILV 338
            NRRI+ +V
Sbjct: 474 RNRRIEFVV 482


>gi|262377497|ref|ZP_06070719.1| outer membrane protein [Acinetobacter lwoffii SH145]
 gi|262307553|gb|EEY88694.1| outer membrane protein [Acinetobacter lwoffii SH145]
          Length = 352

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +  R +   N RLSL RA
Sbjct: 235 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 291

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  V   R+    GFA  +    ++     + NRR+
Sbjct: 292 NSVKSSLVNEYNVDASRL-STQGFAWDQPIADNNTKEGRAMNRRV 335


>gi|146276360|ref|YP_001166519.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554601|gb|ABP69214.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 212

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE   VL++    +         + GHTD       A  N  L L RA + 
Sbjct: 68  FPFDSARLTPEAQRVLREQANWIRQFPEVRFRVYGHTD---LVGSASYNKSLGLRRAKAV 124

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                  G+S  R+  +  +   R  I        NRR
Sbjct: 125 VAFFASQGISPSRLEALVSYGETRPVIPVATPEERNRR 162


>gi|266621919|ref|ZP_06114854.1| putative flagellar motor protein MotB [Clostridium hathewayi DSM
           13479]
 gi|288866392|gb|EFC98690.1| putative flagellar motor protein MotB [Clostridium hathewayi DSM
           13479]
          Length = 283

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 17/216 (7%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +  ++ + Q +    S     +  +DL   +  E +   E                   
Sbjct: 41  KLEEIAAAMQRQLGIESTNDLEDVPQDLKYPSISEGAGAPEGEGSQFNTGTGGGARSASS 100

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
             + D+AK I S       D      +   +   + I     +N  +F   S++    + 
Sbjct: 101 LAMADMAKDIQSYFQMENLDA-----VVSDSENAVYIRF---KNDLLFAPDSAVLQENSK 152

Query: 250 VVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
            +L  +G +L    + I    I GHT A    ++  D   LS +RA +    L    G+ 
Sbjct: 153 SMLDALGIMLKDRQDEIMAIYINGHT-AQAANSLINDRL-LSSERADNVAIYLEDHVGLE 210

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             ++    G+  +     +        NRR+D+++ 
Sbjct: 211 PKKLI-CRGYGKYYPIADNSTKEGRELNRRVDMIIL 245


>gi|315125307|ref|YP_004067310.1| outer membrane protein; signal peptide [Pseudoalteromonas sp.
           SM9913]
 gi|315013820|gb|ADT67158.1| putative outer membrane protein; signal peptide [Pseudoalteromonas
           sp. SM9913]
          Length = 354

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S    + +  + ++   L    +  + + GHT A      + + W LS  RA + 
Sbjct: 244 FPNNDSSVSQQYLNDIDEVATFLKEYPDTTVLLEGHTSA--VGKASYNKW-LSKKRADAV 300

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            + L+  G++EDRI+  +G    RLK  ++    ++ NRR++  V+  +
Sbjct: 301 AKKLIADGIAEDRIT-TAGLGEERLKNEANTAKAHAENRRVEAHVKSIK 348


>gi|300772773|ref|ZP_07082643.1| OmpA family outer membrane protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300761076|gb|EFK57902.1| OmpA family outer membrane protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 628

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F  +    LP +   L  +   L  +    I I GHTD +      + N  LS +R
Sbjct: 522 NNIFFALNKYDLLPSSTSDLNTLVLFLQENPLIRIEIGGHTDNT---GNDQLNKTLSDNR 578

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +    L+  G+S +R+    G+  ++    ++     + NRR +  +
Sbjct: 579 AKAVVSYLIARGISANRLLA-KGYGSNQPLATNETETGKALNRRTEFKI 626


>gi|121605683|ref|YP_983012.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594652|gb|ABM38091.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 210

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+  P     L  +   +      + I  GHTD+         N +LS+ R+ +
Sbjct: 102 FFDFDKSVIKPAGKEKLDDLIGKIKDINLEVIIAVGHTDSV---GSDSYNQKLSVRRSEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
               L+  G+ ++R+    G    +      +    + NRR++I V
Sbjct: 159 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTAEGRAKNRRVEIEV 203


>gi|319952843|ref|YP_004164110.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421503|gb|ADV48612.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 644

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +   +++K+   L       I I  HTDA   R     N  LS  RA + 
Sbjct: 537 FDFDQSYIRKDAQAIMEKVVAYLNQYPNTKIRIGSHTDA---RANDNYNLSLSERRANAT 593

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRIDILVED 340
           Y  L+K G+   R++   GF   +L  A D         +  NRR + +V +
Sbjct: 594 YDYLVKKGIDASRLT-FKGFGETQLTNACDNNTNCSSEKHQLNRRSEFIVVE 644


>gi|254448733|ref|ZP_05062191.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
 gi|198261741|gb|EDY86028.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015]
          Length = 207

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   S     E   VL    + LA + +V + + GHTD    R     N  LS  RA +
Sbjct: 99  FFAFDSDQVKEEFNDVLIAHAKYLASNPDVSVRLEGHTDE---RGTREYNLALSERRAKA 155

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
             Q LM  G   + ++ + GF         +++   + NRR +++
Sbjct: 156 VRQFLMLYGAPAESVN-VYGFGEELPLALGSTEEAYAENRRAELV 199


>gi|260061280|ref|YP_003194360.1| OmpA family protein [Robiginitalea biformata HTCC2501]
 gi|88785412|gb|EAR16581.1| OmpA family protein [Robiginitalea biformata HTCC2501]
          Length = 832

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 19/275 (6%)

Query: 82  GIFDEQNPPERSSQNKIDLS--IDEHITKNS-VDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
           G  + +N  +  +  K D S  +DE   K      ++G       Y          + + 
Sbjct: 560 GFLEVENLGQPINSKKDDFSYIVDEATQKGFFASNRVGGKGDDDLYSFQRLLPEETNENA 619

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
            +    + +T D+     +       + + +           + + +  R + L + A  
Sbjct: 620 IAGVVTDLVTGDAIPEALVTLLDANNRKLKEIVTEADGSFVFQDLDSNTRYRILVEKATY 679

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIID-----QRNTPMFDKSSSIPLPETIVVLQ 253
                     DN    V     +    I + D     +     F+        +    L 
Sbjct: 680 SEQQEEVATRDNEQVDVELPMRKLQERIVVEDGVRKLKTGPIYFNFDKHNIRSDAAEELD 739

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+  V+      VI+I  HTD+   R  +  N  LS  RA S    L+++G+   RI   
Sbjct: 740 KLVAVMQEYPSMVIAIESHTDS---RGSSVYNRYLSDLRAKSTRAYLIENGIDPSRIQSA 796

Query: 313 SGFAHHRLKIASD-------PMNSANRRIDILVED 340
            G+   RL    D         +  NRR + +V D
Sbjct: 797 KGYGEDRLLNDCDGSVRCTSQQHQLNRRSEFIVVD 831


>gi|260363437|ref|ZP_05776283.1| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|260876568|ref|ZP_05888923.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260895072|ref|ZP_05903568.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308086012|gb|EFO35707.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093570|gb|EFO43265.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308113744|gb|EFO51284.1| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|328473927|gb|EGF44744.1| putative outer membrane protein [Vibrio parahaemolyticus 10329]
          Length = 205

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     +  N  LS  RA
Sbjct: 82  RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +  + L+++G++ DR++ I G+    L      +  ++ NRR+   V   +G
Sbjct: 139 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190


>gi|170703354|ref|ZP_02894140.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170131738|gb|EDT00280.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 243

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L +  +    +    +++ G+TD+         N RLS  RA + 
Sbjct: 140 FTFDSAALTPSARQELNRFLDANRDARFSRVTVTGYTDSQ---GAHAHNVRLSEARARAV 196

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
              L   G+  +R + +  G A   +  A+    + NRR++I +E 
Sbjct: 197 ATYLRTGGLRAERFTTVGKGAAEPVVSNATAEGRAQNRRVEIELET 242


>gi|77465487|ref|YP_354990.1| OmpA family outer membrane protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389905|gb|ABA81089.1| Possible outer membrane protein, OmpA family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 453

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277
              + I  +   +  +F  + +    +   ++  +  VLA        + + GHTD  P 
Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNADYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
              N    N  LS  RA +   +L++ GV    I    G A       +      + NRR
Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADSEPVADNATRAGRAQNRR 444

Query: 334 IDILVEDR 341
           ++I +E R
Sbjct: 445 VEIRIEKR 452


>gi|153838879|ref|ZP_01991546.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149747670|gb|EDM58584.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 205

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     +  N  LS  RA
Sbjct: 82  RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +  + L+++G++ DR++ I G+    L      +  ++ NRR+   V   +G
Sbjct: 139 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190


>gi|189463929|ref|ZP_03012714.1| hypothetical protein BACINT_00263 [Bacteroides intestinalis DSM
           17393]
 gi|189438502|gb|EDV07487.1| hypothetical protein BACINT_00263 [Bacteroides intestinalis DSM
           17393]
          Length = 666

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               ++   +   PE+ V L ++ ++L  +  V I +  H D   ++     N RLS  R
Sbjct: 529 ENIFYEFDRADLTPESTVALDELIQLLNDNPNVTIELSAHCD---YKGNDDYNLRLSQRR 585

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           A S  + L+K G+  +R++   G+   + K  ++
Sbjct: 586 AESVVRYLIKGGIDSERLTP-KGYGEQQPKTVTN 618


>gi|149928286|ref|ZP_01916529.1| OmpA/MotB [Limnobacter sp. MED105]
 gi|149823015|gb|EDM82257.1| OmpA/MotB [Limnobacter sp. MED105]
          Length = 218

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
           I+ +       FD   +         +      L       +   GHTD+    + A  N
Sbjct: 99  ITKVSLEADAYFDFDKATLKQGGKDRIDSEIAKLGQVDLNSVIAIGHTDS--IGSDAY-N 155

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            +LS  RA +    ++  GVS DRI +I G    +    +      + NRR++I
Sbjct: 156 QKLSERRAQAVKDYMVSKGVSADRI-QIKGMGESQPVADNKTREGRAKNRRVEI 208


>gi|94971347|ref|YP_593395.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553397|gb|ABF43321.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 605

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S  PLP +I  L ++ + LA +S   I I G+TD          N  LS  RA + 
Sbjct: 496 FASGSDQPLPTSIAALNRLKDELAINSQLAIQIDGYTDDV---GSDILNQPLSEKRALAV 552

Query: 296 YQVLMKSG---VSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            +   ++      E R   ++G         +  +   + NRR++I
Sbjct: 553 KRYFQQTAPLSFPEMRFKSVAGHGSQNPLADNGTLQGKALNRRVEI 598


>gi|313677086|ref|YP_004055082.1| membrane protein [Marivirga tractuosa DSM 4126]
 gi|312943784|gb|ADR22974.1| putative membrane protein [Marivirga tractuosa DSM 4126]
          Length = 504

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 14/199 (7%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           T+ ++K   L  + DL      +       +S  K L + ++K + +    I S  S   
Sbjct: 307 TQIAQKNFSLGFAVDLHLENAAQMASTEFSVSIFKRLPITKQKEVANDEYAIGS--SREF 364

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM---FDKS--SSIPLPETIVVLQKIGEVLAHS 262
            D+  +    +        S+    +  +   F+     +    E    L  I  ++  +
Sbjct: 365 EDDNFQDQPVKVIEKEYQTSVSRDFSFELRKNFNYGFNETNLNDEAKSYLDDIAVMMEAN 424

Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               + + GHTD          N ++S +RA      L   G++ +R+    G       
Sbjct: 425 PALKLKVTGHTDNI---GTEDANQKISEERAKGVRDYLESIGIAAERL-SYEGKGATAPL 480

Query: 322 IASDP--MNSANRRIDILV 338
             ++     + NRR++ L+
Sbjct: 481 YKNNTEENRAKNRRVEFLI 499


>gi|171322883|ref|ZP_02911587.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171091749|gb|EDT37280.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 222

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +  ++     +F    +   P     L K+       T   +++ GHTD+         N
Sbjct: 109 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVIGHTDSV---GNDAAN 165

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             LS  RA +    L   G++   +  +SG        ++      ++NRR+DI ++ 
Sbjct: 166 LTLSKRRAETVAGYLKSHGLNAQTV-SVSGRGSADPVASNATPDGRASNRRVDISLQR 222


>gi|312149267|gb|ADQ29338.1| outer membrane protein [Borrelia burgdorferi N40]
          Length = 381

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|225549312|ref|ZP_03770285.1| outer membrane protein [Borrelia burgdorferi 94a]
 gi|225370170|gb|EEG99610.1| outer membrane protein [Borrelia burgdorferi 94a]
          Length = 389

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 253 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388


>gi|289207478|ref|YP_003459544.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943109|gb|ADC70808.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 213

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLD 290
             +FD  S+   PE    L+++   L         + + GHT        A  N  LS  
Sbjct: 101 QALFDFDSADLRPEGRDALRELARSLTADDVEYSSVLVEGHTCTI---GPADYNQGLSER 157

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           RA S    L   GV ED I +  G+   R    +       ANRR+++  + RQ
Sbjct: 158 RAQSVADFLASEGVREDDI-RTVGYGEDRPTADNSTREGREANRRVEVTSDVRQ 210


>gi|223889267|ref|ZP_03623855.1| outer membrane protein [Borrelia burgdorferi 64b]
 gi|223885300|gb|EEF56402.1| outer membrane protein [Borrelia burgdorferi 64b]
          Length = 333

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 197 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 251

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 252 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 307

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 308 SQKPKYPKSSPLKAKNRRVEITILN 332


>gi|225552144|ref|ZP_03773084.1| outer membrane protein [Borrelia sp. SV1]
 gi|225371142|gb|EEH00572.1| outer membrane protein [Borrelia sp. SV1]
          Length = 381

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|226320927|ref|ZP_03796478.1| outer membrane protein [Borrelia burgdorferi 29805]
 gi|226233699|gb|EEH32429.1| outer membrane protein [Borrelia burgdorferi 29805]
          Length = 381

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|218249525|ref|YP_002374694.1| outer membrane protein [Borrelia burgdorferi ZS7]
 gi|221217420|ref|ZP_03588891.1| outer membrane protein [Borrelia burgdorferi 72a]
 gi|224533995|ref|ZP_03674579.1| outer membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225549874|ref|ZP_03770836.1| outer membrane protein [Borrelia burgdorferi 118a]
 gi|226321923|ref|ZP_03797448.1| outer membrane protein [Borrelia burgdorferi Bol26]
 gi|218164713|gb|ACK74774.1| outer membrane protein [Borrelia burgdorferi ZS7]
 gi|221192698|gb|EEE18914.1| outer membrane protein [Borrelia burgdorferi 72a]
 gi|224512831|gb|EEF83198.1| outer membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225369565|gb|EEG99016.1| outer membrane protein [Borrelia burgdorferi 118a]
 gi|226232513|gb|EEH31267.1| outer membrane protein [Borrelia burgdorferi Bol26]
          Length = 381

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|146329003|ref|YP_001209240.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
 gi|146232473|gb|ABQ13451.1| OmpA family protein [Dichelobacter nodosus VCS1703A]
          Length = 202

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 9/147 (6%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K +  L+G     +V+    +     +   +        FD   S   PE    +Q++ +
Sbjct: 48  KANRNLTGCGEQPVVEQAPAQQVEQVLETEVKTFSADTYFDFDKSSLKPEGKAAIQQLAQ 107

Query: 258 VLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            L         I++ G+TD+   +     N +LS  RA +    L+++GV    I +  G
Sbjct: 108 ELNQRGANVRKITVIGNTDS---KGSDAYNQKLSERRARAVSNYLIENGVPAS-IIEAYG 163

Query: 315 FAHHRLKIASDPM--NSANRRIDILVE 339
               +   ++D     + NRR+DI V+
Sbjct: 164 NGERQPVASNDTEAGRAQNRRVDIAVD 190


>gi|15594512|ref|NP_212301.1| outer membrane protein (tpn50) [Borrelia burgdorferi B31]
 gi|216264209|ref|ZP_03436201.1| outer membrane protein [Borrelia burgdorferi 156a]
 gi|2688065|gb|AAC66563.1| outer membrane protein (tpn50) [Borrelia burgdorferi B31]
 gi|215980682|gb|EEC21489.1| outer membrane protein [Borrelia burgdorferi 156a]
          Length = 389

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 253 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388


>gi|126664582|ref|ZP_01735566.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
 gi|126630908|gb|EBA01522.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
          Length = 373

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
            G++ +I        F  +S+         ++++ + L A+ST  + I GHTD++     
Sbjct: 253 EGVVKTIDTFEIDVQFPLNSAEIGAAYDSQIRRVADALRANSTTYVEIAGHTDST---GA 309

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
           A  N  LS  RA +    L  +  V+ DR+S   G+       ++  D   +ANRR++  
Sbjct: 310 AAYNQDLSERRAAAVANRLTSTLDVNPDRVSS-KGYGEAEPIASNSTDAGRAANRRVEAR 368

Query: 338 VEDRQ 342
           ++ R+
Sbjct: 369 IQVRR 373


>gi|294782738|ref|ZP_06748064.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA]
 gi|294481379|gb|EFG29154.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA]
          Length = 127

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S+  P+   +L  + + +  +   ++I GHTD+       + N  
Sbjct: 14  TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIG 70

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           LS  RA +    L++ G+ EDRI  I           ++       NRR++  +  R
Sbjct: 71  LSRRRAEAVKAKLIEFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 127


>gi|226328442|ref|ZP_03803960.1| hypothetical protein PROPEN_02336 [Proteus penneri ATCC 35198]
 gi|225203175|gb|EEG85529.1| hypothetical protein PROPEN_02336 [Proteus penneri ATCC 35198]
          Length = 340

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            ++   +  +F         E   VL   +  + A    +I I G+TD +        N 
Sbjct: 207 EMVTLDSLALFASGQYKLKNEATKVLVDALINIKAKPGWLIVISGYTDNT---GNPDLNQ 263

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +LSL RA +    ++K+         + G+  H+    +      + NRR++I +  +
Sbjct: 264 KLSLKRAEAVRDWMIKTSDIAPSCFAVQGYGQHQPVADNSTLDGRARNRRVEIRLIPQ 321


>gi|115353202|ref|YP_775041.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115283190|gb|ABI88707.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 243

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L +  +V   +    +++ G+TD+         N RLS  RA + 
Sbjct: 140 FAFDSAALTPSARQELDRFLDVNREARFRRVTVTGYTDSQ---GAHAHNVRLSEARARAV 196

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
              L   G+  +  + +  G A      A+    + NRR++I +E
Sbjct: 197 ATYLRTGGLHAEHFTTVGKGAAEPVASNATAEGRAQNRRVEIELE 241


>gi|296157423|ref|ZP_06840258.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295892195|gb|EFG71978.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 584

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291
           F  +S+      +  L +   VL           + + G++D        + N +LS  R
Sbjct: 478 FASASARVPASAVEDLNQSAHVLNACAGNGKTARLEVAGYSDNV---GGEQANLQLSKQR 534

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           A +    L+K+GV  D +    G+   R   ++D  +    NRRI+ +
Sbjct: 535 AEAVRAYLVKTGVPADSLIA-QGYGGARPVASNDTASGRFANRRIEFV 581


>gi|90407045|ref|ZP_01215235.1| outer membrane protein [Psychromonas sp. CNPT3]
 gi|90311916|gb|EAS40011.1| outer membrane protein [Psychromonas sp. CNPT3]
          Length = 383

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ S     PE   +   + ++L      I + GHTD+    +   + W LS  RA    
Sbjct: 287 FNSSKIKTSPE---LTNVVVQLLQTKEGDIEVIGHTDS--LGSKKYNQW-LSEKRAQVVA 340

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             L+K GV   RI  + G        +++     + NRR+ I
Sbjct: 341 DYLVKEGVDPSRII-VKGEGESSFVSSNETAEGRAKNRRVKI 381


>gi|254228902|ref|ZP_04922324.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262396751|ref|YP_003288604.1| protein F-related protein [Vibrio sp. Ex25]
 gi|151938579|gb|EDN57415.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262340345|gb|ACY54139.1| protein F-related protein [Vibrio sp. Ex25]
          Length = 224

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETI 249
           + +  + K S  ++ L        +  ET   G ++I + +Q +   F   S+    ++ 
Sbjct: 76  QTERASVKKSQNVTSLEMFLNRHNIPHETLSGGHLMIRLKEQVH---FQTGSAQLSAQSQ 132

Query: 250 VVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++ IG  LA  +   + I GH D++   +       LS  RA    + L+ + +   R
Sbjct: 133 DWIRNIGHYLAGRTDVDVVIDGHADSTGAASFNDT---LSEKRAREVEKQLLATSIPRQR 189

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           +    GF  +  + ++   N    NRR+++ +
Sbjct: 190 VFS-RGFGEYVPQCSNSTANGKACNRRVELTL 220


>gi|27366007|ref|NP_761535.1| putative outer membrane protein [Vibrio vulnificus CMCP6]
 gi|27362207|gb|AAO11062.1| putative outer membrane protein [Vibrio vulnificus CMCP6]
          Length = 208

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+   +     A  N  LS  RA
Sbjct: 83  RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 139

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            +  ++L+  G+++ R+ +I GF    L      +  ++ NRR+
Sbjct: 140 NNVREMLIGYGIAQSRV-RIVGFGDSALANEGTDEVSHALNRRV 182


>gi|119383378|ref|YP_914434.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119373145|gb|ABL68738.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 768

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 18/286 (6%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
              F+     L  A    F      E+  + +   +    +         G    ++   
Sbjct: 335 AAQFDEAVGRLEAALPPAFTLAARHEKPGEAEAGPAEFSALVDPGGVSLRGRITDERMRD 394

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
            +E+          S    +    +    + +     L+     E       +    +  
Sbjct: 395 AVESLARARFGQVDSALRSDVSVPEGWTLRAIAALEALDGLARGEAKVTRDLVRISGVSG 454

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GI--LISIIDQRNTPM------ 236
            +    +   A +++  L       +            G+   I  +D+ N  M      
Sbjct: 455 SQTASDMA--AARLAQRLGAGARYELAIRYDRRMDPLLGLPSGIECVDRLNAAMQQSEIG 512

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + S+   +    L+++ E +   +   I I GHTD+         N  LS  RA + 
Sbjct: 513 FEPNKSVIAGDPGPTLERLAETMKLCADFRIEIGGHTDSQ---GSEGFNAELSRARAQAV 569

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
              +  +G+    ++   G+   +    +D       NRRI+ L+ 
Sbjct: 570 LAAMTAAGIDTANMTA-KGYGESQPIADNDTDAGREANRRIEFLLL 614


>gi|5081411|gb|AAD39366.1|AF117971_1 outer membrane protein OprF [Pseudomonas stutzeri LMG 11199T]
          Length = 328

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  ++  GHTD+  
Sbjct: 210 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 263

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 264 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 320

Query: 334 ID 335
           ++
Sbjct: 321 VE 322


>gi|85704497|ref|ZP_01035599.1| OmpA/MotB domain protein [Roseovarius sp. 217]
 gi|85670905|gb|EAQ25764.1| OmpA/MotB domain protein [Roseovarius sp. 217]
          Length = 192

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279
              + I I        FD  SS    +    L  + +V+  +      I GHTD+     
Sbjct: 82  EEQVSIQIS-------FDFDSSALRADQKPKLVTLCKVMQTADIGSFRIVGHTDS---SG 131

Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            A  N RLSL RA    + L    G+  +R+  + G     L   +DP + ANRR++
Sbjct: 132 SASYNERLSLLRAQEVKRHLETDCGIEPERLEAV-GVGEAFLLDKADPDSDANRRVE 187


>gi|326329962|ref|ZP_08196276.1| outer membrane porin OprF [Nocardioidaceae bacterium Broad-1]
 gi|325952170|gb|EGD44196.1| outer membrane porin OprF [Nocardioidaceae bacterium Broad-1]
          Length = 253

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S +   + + V++ +   L    +V + I GH D      +      LS  RA   
Sbjct: 154 FEHNSDVLTGDGLGVVKALAATLTEHPDVTVRIEGHAD---ITGMLAHTQDLSERRAKRV 210

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              L+  GV  DR+S   G+   R  +   P +  NRR++ ++ +
Sbjct: 211 LDTLVGLGVEADRLSS-KGYGETRPIVPGKP-DPGNRRVEFVITN 253


>gi|186893942|ref|YP_001871054.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186696968|gb|ACC87597.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 168

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD        E +  +QKIG +L+    + + + GHTD+         N +LS  R
Sbjct: 61  NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+ +  I  + G         +      + NRR+ I++
Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165


>gi|108810029|ref|YP_653945.1| putative lipoprotein [Yersinia pestis Antiqua]
 gi|108810484|ref|YP_646251.1| lipoprotein [Yersinia pestis Nepal516]
 gi|145600441|ref|YP_001164517.1| lipoprotein [Yersinia pestis Pestoides F]
 gi|165927314|ref|ZP_02223146.1| ompA family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936533|ref|ZP_02225101.1| ompA family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009010|ref|ZP_02229908.1| ompA family protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212007|ref|ZP_02238042.1| ompA family protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167418991|ref|ZP_02310744.1| ompA family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426023|ref|ZP_02317776.1| ompA family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|270487963|ref|ZP_06205037.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294502545|ref|YP_003566607.1| lipoprotein [Yersinia pestis Z176003]
 gi|108774132|gb|ABG16651.1| lipoprotein [Yersinia pestis Nepal516]
 gi|108781942|gb|ABG16000.1| putative lipoprotein [Yersinia pestis Antiqua]
 gi|145212137|gb|ABP41544.1| lipoprotein [Yersinia pestis Pestoides F]
 gi|165915649|gb|EDR34258.1| ompA family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920776|gb|EDR38024.1| ompA family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992349|gb|EDR44650.1| ompA family protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206753|gb|EDR51233.1| ompA family protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962985|gb|EDR59006.1| ompA family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167054946|gb|EDR64746.1| ompA family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|270336467|gb|EFA47244.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294353004|gb|ADE63345.1| lipoprotein [Yersinia pestis Z176003]
          Length = 165

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD        E +  +QKIG +L+    + + + GHTD+         N +LS  R
Sbjct: 58  NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+ +  I  + G         +      + NRR+ I++
Sbjct: 115 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 162


>gi|317503691|ref|ZP_07961708.1| OmpA family protein [Prevotella salivae DSM 15606]
 gi|315665212|gb|EFV04862.1| OmpA family protein [Prevotella salivae DSM 15606]
          Length = 683

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D + +   PE+   L  +  +L  +  V I I  H D   +R  A  N RLS  R
Sbjct: 518 DNIFYDFNKATLRPESTAALDDLVALLNENPHVTIEISAHCD---YRGSAEYNLRLSQQR 574

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           A +  + L+  G+S DR++ + G+   R K+
Sbjct: 575 AENVVRYLISKGISADRLTAV-GYGKQRPKV 604


>gi|291286065|ref|YP_003502881.1| type I secretion outer membrane protein, TolC family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883225|gb|ADD66925.1| type I secretion outer membrane protein, TolC family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 666

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS    ++  V+  I   L       + I GHTD+      A  N +LS +RA S
Sbjct: 558 LFKLNSSKLTKDSYPVVDAIAAKLKTMEGYTLQIVGHTDS---SGNAEFNKKLSAERAKS 614

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
            Y  L++ GV ++ I+   G        ++   +    NRRI+
Sbjct: 615 VYNRLVRKGVPKENIT-TYGKGEELPLYSNATRDGRVKNRRIE 656


>gi|56696346|ref|YP_166703.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
 gi|56678083|gb|AAV94749.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
          Length = 415

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+   PE+ V+L  + + L  +    I I GH+ +      A  N  LS  RA S 
Sbjct: 314 FNYDSAAIRPESAVLLNALADGLRGTDAARIEIVGHSSSE---GAAEYNRALSQRRAASV 370

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              L+  G++ DR++ + G          A +   S NRR+++
Sbjct: 371 VAALVDMGLAADRLAAL-GKGEDEPIASNADEAGRSLNRRVEV 412


>gi|212634650|ref|YP_002311175.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212556134|gb|ACJ28588.1| OmpA [Shewanella piezotolerans WP3]
          Length = 325

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   +         + K+ E LA+   V  + I  +TD+   R+    N R+S+ RA S
Sbjct: 220 YESGGTELTRYAKAQINKVQEYLAYDQNVDLVLIDAYTDSYGGRSA---NERVSVQRADS 276

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             ++ + SG+ + RI    G    R   ++      + NRR+ I +
Sbjct: 277 VKELFVASGIPQSRIH-TMGHGERRHVASNKTIDERARNRRVVIRI 321


>gi|86748026|ref|YP_484522.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86571054|gb|ABD05611.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 208

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+   P     L+ +G+ L  +     I  + GHTDA   +     N  LS  RA 
Sbjct: 98  FDYNSATLSPRAEPQLKSLGDALTSSDLKNSIVMLAGHTDA---KGGDDYNQSLSERRAE 154

Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L++   +  D +  + G+   +LK +++P+ + NRR+ I+
Sbjct: 155 AVKRYLIERYRIQPDNLVAV-GYGEKQLKSSAEPLAAENRRVQIV 198


>gi|5081413|gb|AAD39368.1|AF117973_1 outer membrane protein OprF [Pseudomonas stutzeri DSM 4166]
          Length = 323

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  ++  GHTD+  
Sbjct: 210 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 263

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 264 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 320

Query: 334 ID 335
           ++
Sbjct: 321 VE 322


>gi|77165349|ref|YP_343874.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|254434450|ref|ZP_05047958.1| OmpA family protein [Nitrosococcus oceani AFC27]
 gi|76883663|gb|ABA58344.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|207090783|gb|EDZ68054.1| OmpA family protein [Nitrosococcus oceani AFC27]
          Length = 466

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +      + +E        D +   ++ +  D ++     E         E+   ++ 
Sbjct: 226 GGVAVRDIQRGAEVFSRIAQGDIQGAIEMIRPHDPQERERLREQVRQLQRELERWRPIEE 285

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-----------GILISIIDQRNTPM- 236
           ++R  +   +I S ++   A+ +  G   +T                 I +    +  + 
Sbjct: 286 RQREHE---RIISEVARRSAEQLGLGSRRQTVPRFKLPEPRLDLRSARIQLGTTFHWILD 342

Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   S+   P     L  +   +  +    I I G+ D +        N RLS  RA +
Sbjct: 343 RFRLESAALEPHHRRQLNDLANQVKSNPYAEIEIVGYADTT---GPLAFNQRLSEQRANA 399

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
               L+  GV   +I   SG       +    +   + NRR++I 
Sbjct: 400 VCDYLLSRGVEGSKIKSASGRGEGEPLVPERAEADRARNRRVEIF 444


>gi|312130358|ref|YP_003997698.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906904|gb|ADQ17345.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 444

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S    PE+  V+++I  VL  ++   + I GHTD+       + N  LS  RA S 
Sbjct: 342 FDVNSDKIKPESYGVIKEIATVLQENSGIRVKIVGHTDSD---GDDKSNLTLSQKRAASV 398

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L     +  +R+    G         +      + NRR++ +
Sbjct: 399 KNFLTSEFKIDAERLE-TEGKGESEPSEPNTTPQGKANNRRVEFI 442


>gi|56697920|ref|YP_168291.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
 gi|56679657|gb|AAV96323.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
          Length = 211

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        VL    + +         + GHTDA    +    N  L + RA + 
Sbjct: 68  FAFDSAELDATAQQVLTLQADWIRQFPEVRFRVYGHTDA--VGSSGY-NKSLGMRRARAV 124

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                  G+S  R+  +  +   +  + +      NRR
Sbjct: 125 VSFFASRGISRSRLEAVVSYGETQPLVPTGERERRNRR 162


>gi|269961586|ref|ZP_06175948.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833627|gb|EEZ87724.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 318

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F  +S+   PE+   L  +   L    +  + + G+TD       A  N ++S  R
Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A S    L++ G+  DRI    G   +    +++       NRR++++V
Sbjct: 262 AESVANALVEKGIDADRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309


>gi|326798930|ref|YP_004316749.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326549694|gb|ADZ78079.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 229

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 19/152 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   A +I  T+ G            E  + G  I I+   +  +F    +   PE  
Sbjct: 78  KKMDKQAAEIERTVDGA-----------EVVQAGEGI-IVKFDSGILFGFDQTALKPEAQ 125

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++ + + L  + +  I I GHTD    +  A  N  LS  RA +     +  G+S  R
Sbjct: 126 TNIKNLVKSLNDNPDTDILIIGHTDN---KGTAEYNQGLSERRAAAVKNYAVAQGLSSSR 182

Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            +K  G + +      +++   + NRR++I++
Sbjct: 183 -AKTEGKSFNEPIADNSTEAGRAQNRRVEIVI 213


>gi|312959355|ref|ZP_07773872.1| OmpA family protein [Pseudomonas fluorescens WH6]
 gi|311286072|gb|EFQ64636.1| OmpA family protein [Pseudomonas fluorescens WH6]
          Length = 261

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           S        N +  +  L+ N      +             ++K     +       +  
Sbjct: 21  STPPNANLENARTNFSALQANPNATKVAALETKDAQDWLDKADKAYRDKEDQKKVDQLAY 80

Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227
             N  +        L     K      ++  + L    A    +   +  + T  G L++
Sbjct: 81  LTNQRVEVAKDTIALRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 140

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
             D     +F  + S      +V + K+ + L  + +  + + G+TD++        N  
Sbjct: 141 FGD----VLFATNKSDLKSTGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           LS  RA S  + L + GV   RI    G+        +      + NRR+++ + +
Sbjct: 194 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248


>gi|170719951|ref|YP_001747639.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169757954|gb|ACA71270.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 163

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            D     +F         ++  ++++IG+ L     + + + GH DA      A  N +L
Sbjct: 52  FDLSGKVLFGSDVDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADA---SGKAAYNQQL 108

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           S  RA+S  +VL+  G+    I +  G    +    +      + NRR+ I+V
Sbjct: 109 SERRAHSVAKVLIGIGMPTQNI-QTRGLGSTQPVADNRTSLGRTENRRVSIVV 160


>gi|90581117|ref|ZP_01236916.1| Putative OmpA family protein [Vibrio angustum S14]
 gi|90437638|gb|EAS62830.1| Putative OmpA family protein [Vibrio angustum S14]
          Length = 229

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I +    N   F    +      +  L  +  V     +  +++ G TD+ 
Sbjct: 106 ITVTRNGDNIVLN-MPNEITFGFDQANLNDRAMNALHNVAIVAKEYEKTQLNVLGFTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
             +  A  N RLS  RA +    L++ GV+ +R+    G        ++   N  + NRR
Sbjct: 164 --KGAASYNLRLSQVRADAVANYLIRQGVNANRVVS-QGRGESNPIASNSTANGRAQNRR 220

Query: 334 IDILV 338
           ++I++
Sbjct: 221 VEIIL 225


>gi|85375559|ref|YP_459621.1| outer membrane protein [Erythrobacter litoralis HTCC2594]
 gi|84788642|gb|ABC64824.1| outer membrane protein [Erythrobacter litoralis HTCC2594]
          Length = 197

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           ++       +LI +     T  F  S +   PE +  L+ + E    +    I+I GH+D
Sbjct: 45  IIRPDIEEAVLIPLEPLNTTISFADSGTDLTPEAVAELETLVESRQVTEGGPITIGGHSD 104

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--------ASD 325
           A         N R+SL RA +    L+  GV E RI+ +  F                ++
Sbjct: 105 A---GGNDAVNMRVSLRRAEAVRDWLVARGVDEGRIT-VIAFGEQNPVEPNALPDGQPNE 160

Query: 326 PMNSANRRIDILVEDRQG 343
              +ANRR++I V+  +G
Sbjct: 161 DGRAANRRVEIRVDVPEG 178


>gi|222053440|ref|YP_002535802.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221562729|gb|ACM18701.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 455

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    ++K+ + +         I GHTD       A  N +LS  RA + 
Sbjct: 346 FVTGKNDIQPKYAGEIKKVADYMQKYPTVKGVIEGHTDNV---GSAAANMKLSQRRAEAV 402

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              L+ K G++ DR++   G+   R    +  +     NRRI  +++ 
Sbjct: 403 RSYLIKKHGIAADRLTA-KGYGMTRPIADNGTEAGRQQNRRITAVLDS 449


>gi|325953665|ref|YP_004237325.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323436283|gb|ADX66747.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 218

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           ST   L+     +       +T   I++    +   FD + S+    +++ +  I ++L 
Sbjct: 82  STEKKLINQLNDQKFSVNIDKTKDWITL----DRVYFDINKSVITDNSLIQIDNIAKILK 137

Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 + I G+TD +     A  N ++S +RA    + L+  G+S +RI    G+    
Sbjct: 138 AYPTATLKIGGYTDNT---GDAAINKKISTNRADEVAKALVNKGISANRI-STEGYGDQH 193

Query: 320 LK---IASDPMNSANRRIDILVEDR 341
                  +D   + NRR+DI +  +
Sbjct: 194 FLCEANDTDLCRAQNRRVDIRITKK 218


>gi|15596316|ref|NP_249810.1| YfiB [Pseudomonas aeruginosa PAO1]
 gi|218892915|ref|YP_002441784.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254234254|ref|ZP_04927577.1| hypothetical protein PACG_00091 [Pseudomonas aeruginosa C3719]
 gi|254239490|ref|ZP_04932812.1| hypothetical protein PA2G_00103 [Pseudomonas aeruginosa 2192]
 gi|9947038|gb|AAG04508.1|AE004542_4 YfiB [Pseudomonas aeruginosa PAO1]
 gi|126166185|gb|EAZ51696.1| hypothetical protein PACG_00091 [Pseudomonas aeruginosa C3719]
 gi|126192868|gb|EAZ56931.1| hypothetical protein PA2G_00103 [Pseudomonas aeruginosa 2192]
 gi|218773143|emb|CAW28955.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
          Length = 168

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F  +     P++   L KI   L     + + + GHTD   + +    N +LS  RA
Sbjct: 62  KVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 118

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            S   V  ++G+    I  + G    +    +      S NRR+ I+V
Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165


>gi|163801079|ref|ZP_02194979.1| putative lipoprotein [Vibrio sp. AND4]
 gi|159175428|gb|EDP60225.1| putative lipoprotein [Vibrio sp. AND4]
          Length = 219

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +  R G    ++   N   F  SS          L+ +  +L    +  + I G+TD++
Sbjct: 95  VQVERVGENQLLLRMENGIGFTSSSYQLDSSIHNTLRGVARILVEYPDTSLVIDGYTDST 154

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  LS  RA S  Q L+   V+  R     G+       ++   +    NRR
Sbjct: 155 ---GSDSYNQTLSERRAESVRQYLVSQNVAAGRAIA-RGYGERNPICSNQTSDGRACNRR 210

Query: 334 IDILVEDRQ 342
           ++I +   +
Sbjct: 211 VEIQILPLK 219


>gi|28898406|ref|NP_798011.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806623|dbj|BAC59895.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 214

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     +  N  LS  RA
Sbjct: 91  RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 147

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +  + L+++G++ DR++ I G+    L      +  ++ NRR+   V   +G
Sbjct: 148 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 199


>gi|195941898|ref|ZP_03087280.1| outer membrane protein (tpn50) [Borrelia burgdorferi 80a]
          Length = 380

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 244 IETEVENYIREKKIKAIKVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 298

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 299 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 354

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 355 SQKPKYPKSSPLKAKNRRVEITILN 379


>gi|89074695|ref|ZP_01161153.1| Putative OmpA family protein [Photobacterium sp. SKA34]
 gi|89049459|gb|EAR55020.1| Putative OmpA family protein [Photobacterium sp. SKA34]
          Length = 229

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I +    N   F    +      +  L  +  V     +  +++ G TD+ 
Sbjct: 106 ITVTRNGDNIVLN-MPNEITFGFDQANLNDRAMNALHNVAIVAKEYEKTQLNVLGFTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333
             +     N RLS  RA +    L++ GV+ +R+    G        ++      + NRR
Sbjct: 164 --KGAESYNLRLSQVRADAVANYLIRQGVNANRVVS-QGRGESNPIASNSTSNGRAQNRR 220

Query: 334 IDILV 338
           ++I++
Sbjct: 221 VEIIL 225


>gi|153833067|ref|ZP_01985734.1| outer membrane protein [Vibrio harveyi HY01]
 gi|148870635|gb|EDL69542.1| outer membrane protein [Vibrio harveyi HY01]
          Length = 204

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+         +  N  LS  RA
Sbjct: 81  RVLFANDSDEIDPVFRRQIRELSEFLKEYPSTSIELQGYASKV---GGSEHNLDLSKRRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+  DR+ +I GF    L      +  ++ NRR+   V   +G
Sbjct: 138 NNVRAALLGYGIESDRV-RIVGFGDTHLAEQGTDEVSHALNRRVTASVIGYKG 189


>gi|170735277|ref|YP_001774391.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169821315|gb|ACA95896.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 228

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +I  P  +  L K+       T   + I G+TD          N RLS  RA + 
Sbjct: 125 FDFNQAILTPAAMQQLDKVIANGKGMTFGTVGISGYTDGL---GTDTYNRRLSEQRAQAV 181

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L   G++  R   I G+   R    ++     + NRR++I++
Sbjct: 182 ASYLQAHGLNARRFE-IHGYGAERPVALNNTALGRAQNRRVEIVL 225


>gi|5081412|gb|AAD39367.1|AF117972_1 outer membrane protein OprF [Pseudomonas stutzeri A15]
          Length = 321

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  ++  GHTD+  
Sbjct: 208 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 261

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 262 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 318

Query: 334 ID 335
           ++
Sbjct: 319 VE 320


>gi|5081415|gb|AAD39370.1|AF117975_1 outer membrane protein OprF [Pseudomonas stutzeri ZoBell]
          Length = 321

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  + + GHTD+  
Sbjct: 208 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTTVEGHTDSV- 261

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 262 --GTDQYNQRLSERRAEAVRNVLVNEHGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 318

Query: 334 ID 335
           ++
Sbjct: 319 VE 320


>gi|107025698|ref|YP_623209.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116693120|ref|YP_838653.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105895072|gb|ABF78236.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116651120|gb|ABK11760.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 170

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 44  ALKSAGFQETGQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D       A D   LS  RA      L+  G+   RI+ +  G         +    
Sbjct: 101 GYSDDE--GTAAYDA-ELSRRRAEVVAVELVDVGLDAKRIAIVGKGKLDPVGDNRTPAGR 157

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 158 AQNRRAAIVVSPR 170


>gi|317406287|gb|EFV86528.1| OmpA/MotB domain-containing protein [Achromobacter xylosoxidans
           C54]
          Length = 240

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+        +L ++ +V+    ++ + I GHTD+         N  LS  RA + 
Sbjct: 162 FETGSATLTARGRELLDQVADVIPKLHSDKVQIIGHTDS---SGSRSTNLALSQARADAV 218

Query: 296 YQVLMKSGVSEDRI 309
              L+  G+   R 
Sbjct: 219 RAYLVDKGLPPGRF 232


>gi|288801975|ref|ZP_06407416.1| lipoprotein PG3 [Prevotella melaninogenica D18]
 gi|288335410|gb|EFC73844.1| lipoprotein PG3 [Prevotella melaninogenica D18]
          Length = 225

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A  +    + + T   G+    +   +  +F  + S         L K   +
Sbjct: 74  MDKVAREAAQQLPNARVDKVTDANGLDCVKVTFDSGILFPLNGSNLSASAKNDLTKFASL 133

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  ++   ++I+G+TDA         N  LS  RA +    L   GVS  +I  + GF  
Sbjct: 134 MQRNSNCDVAIQGYTDA---SGNDNINLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGS 190

Query: 318 HRLKIASDPMNSANRRIDILV 338
               I +  ++ ANRR+++ +
Sbjct: 191 ANP-IENKTISQANRRVEVYL 210


>gi|332140722|ref|YP_004426460.1| sodium-type flagellar protein MotY [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550744|gb|AEA97462.1| sodium-type flagellar protein MotY [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 290

 Score = 69.5 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S+     +   L  IGE L   +E+  + + G+TD+        +N +LS+ RA      
Sbjct: 190 STELTKYSQKRLTMIGEYLKEDSELELVLLDGYTDSY---GGRWNNEQLSIRRANEVKSY 246

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           L   GV EDRI +++G    R    +D     + NRR+
Sbjct: 247 LTTLGVPEDRI-QLTGHGEKRHIAPNDTRESRAQNRRV 283


>gi|302347069|ref|YP_003815367.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
 gi|302150976|gb|ADK97237.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
          Length = 225

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A  +    + + T   G+    +   +  +F  + S         L K   +
Sbjct: 74  MDKVAREAAQQLPNARVDKVTDANGLDCVKVTFDSGILFPLNGSNLSASAKNDLTKFASL 133

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  ++   ++I+G+TDA         N  LS  RA +    L   GVS  +I  + GF  
Sbjct: 134 MQRNSNCDVAIQGYTDA---SGNDNINLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGS 190

Query: 318 HRLKIASDPMNSANRRIDILV 338
               I +  ++ ANRR+++ +
Sbjct: 191 ANP-IENKTVSQANRRVEVYL 210


>gi|312892404|ref|ZP_07751899.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295188|gb|EFQ72362.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 452

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS+    +  +L      L    + I++ G+  +      A  N +LS DRA S  
Sbjct: 353 FEFDSSVLRTSSYPILDATSADLRTGKKSITVNGYASSE---GTAAHNLQLSKDRANSVK 409

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
             L+ SGV   RI K+ G         +   +    NRR++
Sbjct: 410 TYLVNSGVDAKRI-KVKGLGETHPIADNSTEDGRVLNRRVE 449


>gi|261253628|ref|ZP_05946201.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
 gi|260937019|gb|EEX93008.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
          Length = 324

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
             Q  +  F  +S+    ++   L ++ E L    +  + I G+TD       A  N  +
Sbjct: 207 TQQLGSGSFKLNSTELNQDSADQLDELVEFLNTYPQANVEIIGYTDT---SGAAEYNQVV 263

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA S    L + G+   RI+   G   +    +++       NRR++++V
Sbjct: 264 SEKRAESVATTLEEKGIDSSRITA-RGEGENNPIASNETREGREQNRRVEVIV 315


>gi|70732413|ref|YP_262169.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68346712|gb|AAY94318.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 252

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+   P     L  +   L   +   I I G+T
Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYQPLNNLANSLREFNQNQIEIVGYT 158

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GVS   +S   G        ++      + 
Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGSNLSA-RGAGPDNPIASNADVNGRAQ 214

Query: 331 NRRIDI 336
           NRR+++
Sbjct: 215 NRRVEV 220


>gi|156974662|ref|YP_001445569.1| hypothetical protein VIBHAR_02380 [Vibrio harveyi ATCC BAA-1116]
 gi|156526256|gb|ABU71342.1| hypothetical protein VIBHAR_02380 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S   +P     ++++ E L       I ++G+  AS        N  LS  RA
Sbjct: 81  RVLFANDSDEIVPVFRRQIRELSEFLKGYPSTSIELQGY--ASKIGGAEH-NLDLSKRRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+  DR+ +I GF    L      +  ++ NRR+   V   +G
Sbjct: 138 NNVRAALLGYGIESDRV-RIVGFGDTHLAEQGTDEVSHALNRRVTASVIGYKG 189


>gi|284035576|ref|YP_003385506.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283814869|gb|ADB36707.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 306

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           + K+ Y        Y +  +Q      S  R   K   L K+T   K  +        P 
Sbjct: 84  DPKQPYIITTKANGYTTLDEQLAFTSGSTNRLYGKQILLFKTTATPKPTSSATASAAKPT 143

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE-----TTRTGILISIIDQRN 233
                  + +        K +++    +V    +   +           G    +   + 
Sbjct: 144 PASPPPVVAKPVSQPPAVKTVAANSERVVPPKTLDAKVVYTPPLVVAPVGKTTQLQALQ- 202

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F +S +  LP+    L+++ + +       I + GHTD          N  LS  R 
Sbjct: 203 ---FVQSKTELLPDAQPALEQLLQFMQSQPTAEIELSGHTDNQ---GDFDQNLLLSKQRV 256

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
                 L+K+G+   RI+   G+   R   +++       NRR++++V  +
Sbjct: 257 EVIKAYLVKNGIPASRIT-TRGYGPTRPIASNNSETTRQQNRRVEMIVLKQ 306


>gi|218780334|ref|YP_002431652.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761718|gb|ACL04184.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 387

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   PE + ++ K+  +L ++    I ++GH D    R     N  LS  RA S 
Sbjct: 285 FDTNKADVKPEYLPLVYKVIPILNNNPGMKIELQGHADN---RGAKDYNQGLSERRAESV 341

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            ++L+  GV   R+    G+   +  + +D   
Sbjct: 342 KKILVDKGVDAGRL-STKGWGFTKPIVPNDSEA 373


>gi|126734660|ref|ZP_01750406.1| OmpA domain protein [Roseobacter sp. CCS2]
 gi|126715215|gb|EBA12080.1| OmpA domain protein [Roseobacter sp. CCS2]
          Length = 632

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    +T  V+  I ++L       I + G TD+         N +LS DRA + 
Sbjct: 499 FDPGSADLTADTQPVVDDIADILKACGDLRIKVSGFTDSQ---GGEVMNQQLSQDRADAV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
              L    V     + I GF        +D      ANRRI+  +
Sbjct: 556 LTALRARRVPVSTFTSI-GFGEENPIADNDTEEGREANRRIEFSL 599


>gi|78221995|ref|YP_383742.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78193250|gb|ABB31017.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 457

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    ++++ + +         I G+TD          N +LS  RA + 
Sbjct: 223 FDIDKADIRPQYKDEVKRVADYMKQYPNTTAVIEGYTDDV---GSDDYNMKLSQRRAEAV 279

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L+   G+   R+S   G+   +     A++     NRRI  +++
Sbjct: 280 VNSLVDDFGIDRSRLSA-KGYGKTQPLTSNATEAGKQKNRRIQAVID 325



 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 97  KIDLSIDE-HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG- 154
           KI+  ID+  I     D      +  KQY      I   ++   S+     L++   +  
Sbjct: 220 KIEFDIDKADIRPQYKDEVKRVADYMKQYPNTTAVIEGYTDDVGSDDYNMKLSQRRAEAV 279

Query: 155 -KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
              L     +++S    + Y              ++K      ++I + +   + D  V 
Sbjct: 280 VNSLVDDFGIDRSRLSAKGYGKTQPLTSNATEAGKQKN-----RRIQAVIDCTLEDPKVI 334

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
             L +     + I          FD       P+    + K+GE +  +      I GHT
Sbjct: 335 AKLPDRLCVSLNIQ---------FDTDKYTIKPQYHDEIAKVGEFMKQNPTTTAVIEGHT 385

Query: 273 DASPFRNIARD-NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK-IASDP-MN 328
           D    R  + D N +LSL RA S    L    G+   R+S   G+ + R     SDP   
Sbjct: 386 D----RVGSYDYNMKLSLRRAESVVTYLADKFGIERSRLSA-KGYGYTRPIGYNSDPKGR 440

Query: 329 SANRRIDILVE 339
           + NRRI+ +++
Sbjct: 441 AMNRRINAIID 451


>gi|22127605|ref|NP_671028.1| outer membrane protein [Yersinia pestis KIM 10]
 gi|45443467|ref|NP_995006.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001]
 gi|150260516|ref|ZP_01917244.1| putative lipoprotein [Yersinia pestis CA88-4125]
 gi|153949584|ref|YP_001402443.1| ompA family protein [Yersinia pseudotuberculosis IP 31758]
 gi|162419496|ref|YP_001605396.1| ompA family protein [Yersinia pestis Angola]
 gi|167401635|ref|ZP_02307129.1| ompA family protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167468843|ref|ZP_02333547.1| ompA family protein [Yersinia pestis FV-1]
 gi|170025832|ref|YP_001722337.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|218927645|ref|YP_002345520.1| putative lipoprotein [Yersinia pestis CO92]
 gi|229836972|ref|ZP_04457137.1| putative lipoprotein [Yersinia pestis Pestoides A]
 gi|229840332|ref|ZP_04460491.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842412|ref|ZP_04462567.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900672|ref|ZP_04515796.1| putative lipoprotein [Yersinia pestis Nepal516]
 gi|21960714|gb|AAM87279.1|AE013976_7 putative outer membrane protein [Yersinia pestis KIM 10]
 gi|45438336|gb|AAS63883.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001]
 gi|115346256|emb|CAL19127.1| putative lipoprotein [Yersinia pestis CO92]
 gi|149289924|gb|EDM40001.1| putative lipoprotein [Yersinia pestis CA88-4125]
 gi|152961079|gb|ABS48540.1| ompA family protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352311|gb|ABX86259.1| ompA family protein [Yersinia pestis Angola]
 gi|167049017|gb|EDR60425.1| ompA family protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|169752366|gb|ACA69884.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229682011|gb|EEO78103.1| putative lipoprotein [Yersinia pestis Nepal516]
 gi|229690722|gb|EEO82776.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696698|gb|EEO86745.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705915|gb|EEO91924.1| putative lipoprotein [Yersinia pestis Pestoides A]
 gi|262360575|gb|ACY57296.1| putative lipoprotein [Yersinia pestis D106004]
 gi|262364521|gb|ACY61078.1| putative lipoprotein [Yersinia pestis D182038]
 gi|320016989|gb|ADW00561.1| putative lipoprotein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 168

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD        E +  +QKIG +L+    + + + GHTD+         N +LS  R
Sbjct: 61  NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+ +  I  + G         +      + NRR+ I++
Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165


>gi|75674700|ref|YP_317121.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74419570|gb|ABA03769.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 463

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 19/282 (6%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
           ++AI         NL        D Q PP     NK  +S    +T    D  + +    
Sbjct: 194 REAIAAALK----NLPEGYSVADDIQAPPYVFEANKDPVSGVLTLTGYVPDNAVHAAIVA 249

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
              ++    I     +                      ST      ++        LS +
Sbjct: 250 SAGRKFGEKIVDKLKASLGAPAGFDAVVTRALRSLSRLSTGRLVVSDRNVE-----LSGD 304

Query: 182 KILAMKRKKRLQDLAKKISS--TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
            +  +  K+   DL K +         V+       +  T    +   ++++R T  F+ 
Sbjct: 305 ALYDLAGKQIRADLPKDLPRGWETKTDVSIKPSASPVDPTVCQQLFGELLEKR-TIQFEA 363

Query: 240 SSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             +    ++I +L ++ E  L   T  I I GHTD+      A  N  LS  RA +    
Sbjct: 364 GQATLHLDSIGLLDQLTETALRCQTATIEIVGHTDSD---GDASFNQTLSERRAQAVVDF 420

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           L+K+G+  +R + + G    +    +D     + NRRID +V
Sbjct: 421 LVKAGLPANRFTPM-GRGSAQPIATNDTDEGKAKNRRIDFIV 461


>gi|325267796|ref|ZP_08134446.1| OmpA family protein [Kingella denitrificans ATCC 33394]
 gi|324980677|gb|EGC16339.1| OmpA family protein [Kingella denitrificans ATCC 33394]
          Length = 221

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
             +     E  R G  I +    N   F  +S+    +    L    E LA   E  I++
Sbjct: 85  EQLANTGVEVERKGNQIKLTMPENIT-FATNSAALSAQAQNALATAAETLAKYNETTITV 143

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327
            GHTD++   N A +N  LS +RA +    L + GV+  R++ + G    +    ++   
Sbjct: 144 VGHTDST--GNDAINN-PLSYNRANAVSSFLAQHGVATQRMT-VLGQGSRQPIADNNTEA 199

Query: 328 -NSANRRIDILV 338
             + NRR++IL+
Sbjct: 200 GRAQNRRVEILI 211


>gi|228469678|ref|ZP_04054646.1| immunogenic 23 kDa lipoprotein PG3 [Porphyromonas uenonis 60-3]
 gi|228308697|gb|EEK17423.1| immunogenic 23 kDa lipoprotein PG3 [Porphyromonas uenonis 60-3]
          Length = 225

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            R+    K++   L         +G   E+   G  I ++      +F+ SSS     + 
Sbjct: 71  NRMDKQKKELEQQL--------PEGTQVESVNDGQAIKVVFDSG-LLFNTSSSTLSSSSR 121

Query: 250 VVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L+K  + L  +   V+ I GHTD+       R N  LS DRA S    L   GVS  R
Sbjct: 122 NDLRKFADNLNKNHDTVLEIIGHTDS---SGNDRINDPLSRDRAKSVRDFLEGQGVSSTR 178

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           + K  G   H     +        NRR+++ +   Q
Sbjct: 179 M-KYEGRGSHEPVDTNATAEGKRKNRRVEVFILPSQ 213


>gi|149190763|ref|ZP_01869029.1| outer membrane protein OmpA [Vibrio shilonii AK1]
 gi|148835419|gb|EDL52390.1| outer membrane protein OmpA [Vibrio shilonii AK1]
          Length = 338

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+     T      +  ++    +  ++I G+TD+         N R+S +RA S 
Sbjct: 223 FEFNSTKLNENTKSDYDPLIALMQDHPDSTVTITGYTDS---SGPEEVNQRISEERAESI 279

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L   G+   R++ +SG         +      + NRR++I V
Sbjct: 280 AAYLESQGIDRSRMT-VSGMGEANPIADNSTKEGRAQNRRVEITV 323


>gi|301167893|emb|CBW27478.1| putative sodium-driven polar flagellar protein [Bacteriovorax
           marinus SJ]
          Length = 288

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 15/199 (7%)

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211
           ++GK    S  +  S      + +  L+ E IL      R  D  +++ +  + L   N+
Sbjct: 84  QRGKSPDDSPTMIDSQEPVRPFPIDFLTMEGILDKHEINRESD--EELKTMKNDLYEYNL 141

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVLQKIGEVLAHSTEVISIR 269
              V       GI + + D     +F   S        +I V  ++  +L +    + ++
Sbjct: 142 SDSVNIYEMPEGIKVKVKD---KILFRYGSLRIANEQVSIEVYTRLVRLLTNKDWSVFVQ 198

Query: 270 GHTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---- 322
           G++           N   + LS  RA +  + L++ GV  D+IS +  +   R +     
Sbjct: 199 GYSSRGEVSTEDGKNMDAFELSAARASAVTRSLIRRGVKPDQISTVF-YGDIRPENIPGR 257

Query: 323 ASDPMNSANRRIDILVEDR 341
           +   +  A+RR+D ++  R
Sbjct: 258 SQTEIERASRRVDFILRKR 276


>gi|262195655|ref|YP_003266864.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262079002|gb|ACY14971.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 507

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F         ++   L+++   L        I I GH  AS        N RLS  RA 
Sbjct: 377 LFGYDKCALSEQSHDSLREVAMTLQQHPEWGQIRIEGH--ASQEGKPEY-NLRLSSCRAM 433

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           +  + L+ +GV+ +R+  + GF     K ++        NRR++ +
Sbjct: 434 AVRKFLIANGVAAERLQSL-GFGDTCPKFSTGTPEEMQQNRRVEFI 478


>gi|254439458|ref|ZP_05052952.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198254904|gb|EDY79218.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 310

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +++ LQ + + L  + +  +++ GHTD+         N  LS  RA S 
Sbjct: 205 FQTGSAQLGDASVMSLQDLADYLIANPDRTVALVGHTDSV---GSLDGNIALSKRRAGSV 261

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
            + L+ +     R     G  +      +  +    ANRR+++++   Q
Sbjct: 262 LERLVTTYDIPRRQLDAQGMGYLSPVATNLTEDGREANRRVEVIITSTQ 310


>gi|254251106|ref|ZP_04944424.1| Outer membrane protein [Burkholderia dolosa AUO158]
 gi|124893715|gb|EAY67595.1| Outer membrane protein [Burkholderia dolosa AUO158]
          Length = 557

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIARDNWRLSLD 290
           P+F +  +          +++  VL          + I GH D+         N+RLS  
Sbjct: 446 PLFARGKA--TFSAARARRELAHVLRLILQNPDHRVLIEGHADSE---GSPDANFRLSEA 500

Query: 291 RAYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           RA +    L ++ G+   RI  I G    R     A++   + NRR+D+ +  
Sbjct: 501 RARAIRDWLVVEGGLPITRI-AIQGMGDLRPIGDNATEAGRALNRRVDVSLIP 552


>gi|325920959|ref|ZP_08182848.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
 gi|325548579|gb|EGD19544.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas gardneri ATCC 19865]
          Length = 400

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
           +I      +FD   +   P+   VL  +   L    T+ + +RGHTDA   +     N  
Sbjct: 285 LITLNERILFDFDKAGIRPDAARVLDVLAAALGKVNTKDMQVRGHTDA---KGSNAYNQA 341

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRIDILVE 339
           LS  RA +    L   G    + +   G+   +    +      +P     NRR++I + 
Sbjct: 342 LSERRADAVLAALRTRG--AAQSAGAKGYGESQPVAPNTLNGQDNPGGRQLNRRVEIFLR 399

Query: 340 D 340
            
Sbjct: 400 T 400


>gi|296117473|ref|ZP_06836060.1| OmpA/MotB domain protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295975994|gb|EFG82785.1| OmpA/MotB domain protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 380

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 265 VISIRGHTD---ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            I + G+TD   + P       N  LSL RA +    L++ GV    I  I GF      
Sbjct: 302 RIEVNGYTDTSASHPGPQGEHYNQELSLRRAQTIKAELVRDGVPGPSID-IHGFGEANPL 360

Query: 322 IASDPM--NSANRRIDILV 338
           + + P    + NRR++I++
Sbjct: 361 VPTGPNTREAQNRRVEIIL 379


>gi|170737617|ref|YP_001778877.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169819805|gb|ACA94387.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 170

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 44  ALKSAGFQETGQGFE---FGSTEPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D       A D   LS  RA      L+  G+   RI+ +  G         +    
Sbjct: 101 GYSDDE--GTAAYDA-ELSRRRAEVVAVELVDVGLDAKRIAIVGKGKLDPVGDNRTPAGR 157

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 158 AQNRRAAIVVSPR 170


>gi|86137204|ref|ZP_01055782.1| OmpA domain protein [Roseobacter sp. MED193]
 gi|85826528|gb|EAQ46725.1| OmpA domain protein [Roseobacter sp. MED193]
          Length = 329

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 12/159 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +R+ +L     +  S  S  V  +     L +       + +    +  +F+  +    P
Sbjct: 179 QRQPQLALAPAETPSAGSPPVQKSNPASDLKDLLEQQGHVVL----DGVVFETGAETLSP 234

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
           E I  L+ +   +   ++  + I GHTD+        DN  LSL RA      L+ + GV
Sbjct: 235 EAITSLRGLAGFMEEQSKAQVLIVGHTDSV---GGLEDNTSLSLRRAQMVKDALVSALGV 291

Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           +E RI  I+G  +     ++        NRR+++++  R
Sbjct: 292 AEGRI-SIAGAGYMAPIASNLTAAGREKNRRVEVVLLAR 329


>gi|313835693|gb|EFS73407.1| OmpA family protein [Propionibacterium acnes HL037PA2]
 gi|314928364|gb|EFS92195.1| OmpA family protein [Propionibacterium acnes HL044PA1]
 gi|314970216|gb|EFT14314.1| OmpA family protein [Propionibacterium acnes HL037PA3]
          Length = 115

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ID   + +FD  S +  P    ++ ++ +  V    +  I + G+TD          N  
Sbjct: 3   IDLDASVLFDLDSDVVKPAGRQIIDRMVKQFVARKVSGKIGVTGYTDN---SGSVAHNLD 59

Query: 287 LSLDRAYSAYQVLMKSGVSEDR----ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS  RA S  ++L   G+   +    ++   G A       S+     NRR+ I V++
Sbjct: 60  LSRRRAVSVARLL---GLQLSKGVTLVTAGKGEADPVASNDSEAGRRLNRRVTITVKE 114


>gi|119896920|ref|YP_932133.1| hypothetical protein azo0629 [Azoarcus sp. BH72]
 gi|119669333|emb|CAL93246.1| conserved hypothetical secreted protein [Azoarcus sp. BH72]
          Length = 198

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +++   PE+   L + + +V +     ISI GHTD         DN  L L RA + 
Sbjct: 97  FETAAARLTPESRNQLPRVLAQVRSRPAPDISIIGHTDTV---GSNADNEALGLVRARTV 153

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
            ++L  +GV+   I+ ++      L +    +   + NRR+++ V
Sbjct: 154 LKLLEAAGVTAREIT-VTSHGERNLLVPTADNTDEARNRRVEVTV 197


>gi|28900403|ref|NP_800058.1| hypothetical protein VPA0548 [Vibrio parahaemolyticus RIMD 2210633]
 gi|308095573|ref|ZP_05906887.2| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|308125408|ref|ZP_05775064.2| OmpA family protein [Vibrio parahaemolyticus K5030]
 gi|308126617|ref|ZP_05911271.2| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|28808714|dbj|BAC61891.1| putative protein F-related protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085093|gb|EFO34788.1| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|308107912|gb|EFO45452.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|308113845|gb|EFO51385.1| OmpA family protein [Vibrio parahaemolyticus K5030]
          Length = 208

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             K+  +  +      S   +    R  +    A+K S+ ++ L        +  ET   
Sbjct: 32  APKTNTELRHPEWGYASASHVSTAPRVNQTARAAEKKSNNVTSLEMFLDRHNIPHETIGG 91

Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
           G ++I + +Q +   F   S+     +   L+K+G  LA  +   + I GH D++   + 
Sbjct: 92  GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 148

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
                 LS  RA    + ++ S +   R+    GF  +  +   A+    + NRR+++++
Sbjct: 149 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 204


>gi|218511064|ref|ZP_03508942.1| hypothetical conserved membrane protein [Rhizobium etli Brasil 5]
          Length = 106

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           SS   P+   +LQK+  V+       I I GHTDA      AR N  LS+ RA    +  
Sbjct: 9   SSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRAREVARFF 65

Query: 300 -MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
                +  +R+  + G           P    NRR++
Sbjct: 66  TEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 101


>gi|163786795|ref|ZP_02181243.1| hypothetical protein FBALC1_16457 [Flavobacteriales bacterium
           ALC-1]
 gi|159878655|gb|EDP72711.1| hypothetical protein FBALC1_16457 [Flavobacteriales bacterium
           ALC-1]
          Length = 637

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 20/289 (6%)

Query: 68  YFNPFGKNLMTASKGIF----DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           YF+  G   +      F    D +  P R+    ++ + D+       + + G  +  ++
Sbjct: 347 YFSSNGHLGLGGMDVFFTREIDGKIAPIRNVGIPVNSNADDFAFSIDEETEEGFVSSNRE 406

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
             +  ++++ +   Q       S T   +K ++      +     +         + E +
Sbjct: 407 GGKGSDDVYAIKKLQPLCDVLVSATVLDDKTREPISGASVSLYDAEGNKVVSKTTNAEGV 466

Query: 184 LAMKRK-KRLQDLAKKISSTLSGLV----ADNIVKGVLFETTR-TGILISIIDQRNTPMF 237
                + +   +L   +    S  V    +      V         ++++   +     F
Sbjct: 467 AEFIIECEEDTELEVVMDGFDSKRVPVKGSSEEENNVQISLDPIEKLIVADKIELAPIYF 526

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +   S    +    L K+ +++    + VI+   HTD   +   A  N RLS  RA +  
Sbjct: 527 EYDKSNVTAQAAFELDKLVQIMNKYPDLVINATSHTD---YIGSAPYNMRLSDRRAKTTV 583

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340
           Q ++  G+ E RIS + G      KI      +D     NRR + ++  
Sbjct: 584 QYVISKGIDESRISGV-GKGETEPKIDCGTKCTDEERQMNRRSEFIIVS 631


>gi|260773001|ref|ZP_05881917.1| outer membrane protein [Vibrio metschnikovii CIP 69.14]
 gi|260612140|gb|EEX37343.1| outer membrane protein [Vibrio metschnikovii CIP 69.14]
          Length = 222

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C  +  +++  G+    +      I           + +     +++  +        
Sbjct: 15  SGCAATQRQNATTGESETNAATRGALIGAVAGAAAGLATGDNAKQRRQRALIGATGGAAV 74

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253
               G   D     +  E   +G+ +  +      +       F  +S          L+
Sbjct: 75  GGGVGYYFDQQEAALREELLHSGVQVQRVGDNQLLLRMENGIGFQTNSYQLDSSIHRTLR 134

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + ++L    +  + I GHTD++        N  LS  RA S    L+  GV+  R    
Sbjct: 135 GVAKILVQYPDTSLVIDGHTDST---GGDTTNQVLSERRAESVRSFLLSQGVAPGRAIA- 190

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            G         +      + NRR+DI +   +
Sbjct: 191 RGNGSRFPICTNSTVEGRACNRRVDIQILPLK 222


>gi|255318660|ref|ZP_05359891.1| outer membrane protein [Acinetobacter radioresistens SK82]
 gi|262379115|ref|ZP_06072271.1| outer membrane protein [Acinetobacter radioresistens SH164]
 gi|17978530|gb|AAK57731.1| OmpA-like protein precursor [Acinetobacter radioresistens]
 gi|255304342|gb|EET83528.1| outer membrane protein [Acinetobacter radioresistens SK82]
 gi|262298572|gb|EEY86485.1| outer membrane protein [Acinetobacter radioresistens SH164]
          Length = 348

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +  R +   N RLSL RA
Sbjct: 230 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIDGHTDNTGPRAL---NERLSLARA 286

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  +   R++   GFA  +    +      + NRR+
Sbjct: 287 NSVKSSLVNEYNIDPSRLTA-QGFAWDQPIADNSTKEGRAMNRRV 330


>gi|149914118|ref|ZP_01902649.1| OmpA family protein [Roseobacter sp. AzwK-3b]
 gi|149811637|gb|EDM71470.1| OmpA family protein [Roseobacter sp. AzwK-3b]
          Length = 181

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S+         L          +   +I GHTD+   R     N  LSL RA +  
Sbjct: 84  FATDSARLGHSARQNLANFFASTGAVSY--TIVGHTDS---RASDEYNMDLSLRRANAVA 138

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            V   +G    RI+ + G      K +++     +ANRR++IL
Sbjct: 139 SVARSTG---ARIADVRGMGERAPKASNNTAAGMAANRRVEIL 178


>gi|262403880|ref|ZP_06080438.1| outer membrane protein [Vibrio sp. RC586]
 gi|262350384|gb|EEY99519.1| outer membrane protein [Vibrio sp. RC586]
          Length = 337

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD S  I        + ++ + L  + E  I + GHTD+         N  LS  RA S 
Sbjct: 237 FDSSEIILTRSLSKKISQVIKFLFDNPEIKIEVIGHTDSV---GSQEYNLVLSKQRATSI 293

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            Q+++  GVS +RI+ I G         +      + NRR++I
Sbjct: 294 AQLIIDGGVSINRIN-IIGKGEDEPITTNSHAMGRAQNRRVEI 335


>gi|327480660|gb|AEA83970.1| outer membrane protein OprF precursor [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  ++  GHTD+  
Sbjct: 179 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 232

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 233 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 289

Query: 334 ID 335
           ++
Sbjct: 290 VE 291


>gi|237744058|ref|ZP_04574539.1| outer membrane porin F [Fusobacterium sp. 7_1]
 gi|256028141|ref|ZP_05441975.1| Outer membrane porin F [Fusobacterium sp. D11]
 gi|260494357|ref|ZP_05814488.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
 gi|289766078|ref|ZP_06525456.1| outer membrane porin F [Fusobacterium sp. D11]
 gi|229431287|gb|EEO41499.1| outer membrane porin F [Fusobacterium sp. 7_1]
 gi|260198503|gb|EEW96019.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
 gi|289717633|gb|EFD81645.1| outer membrane porin F [Fusobacterium sp. D11]
          Length = 182

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD    I   +    L  + + L  + +  I I G+TD
Sbjct: 57  EEGVTIRREGNNLILSMPELILFDFDKYIVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 116

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 117 ---FIGTEAYNLELSVKRANAIKDFLISRGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 173 RRVEFII 179


>gi|124002133|ref|ZP_01686987.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134]
 gi|123992599|gb|EAY31944.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134]
          Length = 617

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F    +    +++   + +   L ++  V I + GHTD         +N  LS  RA
Sbjct: 508 RVFFMYKKAEMHKKSLPAAKALLTFLKNNPGVSIEVSGHTDDV---GSNSNNVALSQQRA 564

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
              Y  L+  G+ ++R+ K  G+      I ++   +   NRR
Sbjct: 565 NVVYNWLVSKGIEKERLVK-KGYGAKVPIIPNETNYARIVNRR 606


>gi|254491000|ref|ZP_05104181.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224463513|gb|EEF79781.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 171

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F    +    E+ V  Q+I  ++L  S   + I GHTD S   + A  N  LSL RA
Sbjct: 67  KLFFLLDKTEFTAESRVESQEIYQKILDRSFGEVVITGHTDTS--ASSAY-NEALSLRRA 123

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
               Q L+  GV  D + +IS    +RL +    D +   NRR++I
Sbjct: 124 QKVRQQLIDFGVPADSV-RISAEGEYRLLVSTPDDTVEVRNRRVEI 168


>gi|163800823|ref|ZP_02194723.1| putative outer membrane protein [Vibrio sp. AND4]
 gi|159175172|gb|EDP59969.1| putative outer membrane protein [Vibrio sp. AND4]
          Length = 212

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   SS   P     + ++ + L       I ++G+T           N  LS  RA
Sbjct: 85  RILFANDSSRIDPVFAGQISELSDFLKEYPTTSIELKGYTS---ITGTNEYNLALSKRRA 141

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            S  Q L+ +G++ +R+  I GF  +        +   + NRR+   V   +G
Sbjct: 142 ESVRQELVNNGIAPERLE-IVGFGENNPASQGTDETSQALNRRVTASVIGYKG 193


>gi|127511243|ref|YP_001092440.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126636538|gb|ABO22181.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 201

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F   S    P+    ++ +   +       ++I GH   +        N  LS 
Sbjct: 73  QELKILFANDSYYIDPQYYDQVEVVATFMRQYPNTKVTIEGHCSKT---GSYEHNLALSQ 129

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +RA +   +L  + G++ DR++ I G+++ R    +    +   NRR+
Sbjct: 130 NRADAVTSLLSERFGIASDRLTAI-GYSYDRPVDPTHTKMAHTRNRRV 176


>gi|312129756|ref|YP_003997096.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906302|gb|ADQ16743.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 800

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++S +  LP +   L ++ + +       I I GHT+        R N RLS  RA + 
Sbjct: 701 FEQSQTTMLPGSEDKLAEVLQFMKDHPNVKIEIIGHTEK---AGDERQNVRLSEFRARTV 757

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              L   G++  RI+  +G         +D   + NRRI++ V +
Sbjct: 758 ANWLFNKGIASSRIT-TAGKGSAEPIDPND--AAVNRRIEVKVVE 799


>gi|260769389|ref|ZP_05878322.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
 gi|260614727|gb|EEX39913.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
          Length = 316

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD SS          L  + E L    +  + I GHTD++        N +LS  R
Sbjct: 210 DALSFDSSS--LNATQQQALSTLAEKLNQQPQAQVLIIGHTDST---GSDAYNTKLSTRR 264

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +A  VLM++ V+E RI K+ G    R    +      + NRR+++ +
Sbjct: 265 AQAAADVLMENQVAEHRI-KVFGEGQTRPIDTNTTPAGRAHNRRVEVQI 312


>gi|313683568|ref|YP_004061306.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156428|gb|ADR35106.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 412

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 18/227 (7%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK----EKIL 184
             +    ++               K     K    E ++ KE+   +P ++K    E  +
Sbjct: 186 EKLKPGQSASSIAMADPMQPVIDVKPVKPTKPRKEEPAVPKEKETPVPDVTKTVMPEPEV 245

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-------RNTPMF 237
             +    + ++  KI      + A   V+  +    +      +++        RN  +F
Sbjct: 246 KSQTTPPIANVEPKIEPAAPVVAAKPAVEKPVVVVAKPATEKPVVEAAAPAPYFRNFQIF 305

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP---FRNIARDNWRLSLDRAY 293
           +             L++  ++        ++I G+TD  P    + +   N  LS  RA 
Sbjct: 306 ESRVVALSEVGKERLREWAQLFKAGGYKSVTINGYTDNIPPQRLKALYATNAILSEARAQ 365

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
                L+  GV    I K++G         ++     S NRRI+ ++
Sbjct: 366 MVADYLVSIGVDSSAI-KVNGRGDVDPVAPNETEEGRSKNRRIEFIL 411


>gi|269955512|ref|YP_003325301.1| OmpA/MotB domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304193|gb|ACZ29743.1| OmpA/MotB domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 217

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
                  +++    +          +L +            +   +I    R     DLA
Sbjct: 7   GAGPASAQSTTPASASSAPTPSPDPELMQKAEAALAEQAERIEAAEITDALRADATFDLA 66

Query: 197 KK-----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
            +     +++  +          +  ET +     +++   +  +F    S   PE    
Sbjct: 67  PEDATFALATEDATFTLRPDDSTITVETRQETEDDTVVTLTSDLLFGFGESALTPEAQAA 126

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           + ++   +      + + GHTDA         N  LS  RA +   VL  SG   D +  
Sbjct: 127 VAELATTIPQ-DAAVRVDGHTDAV---GSDELNLTLSEQRADAVAAVL--SGARPDLVLT 180

Query: 312 ISGFAHHRLKIASD-------PMNSANRRIDI 336
           + G        +++          + NRR+++
Sbjct: 181 VEGHGEADPVASNEEGGVDNPAGRALNRRVEV 212


>gi|153868783|ref|ZP_01998526.1| outer membrane OmpA family protein [Beggiatoa sp. PS]
 gi|152074626|gb|EDN71462.1| outer membrane OmpA family protein [Beggiatoa sp. PS]
          Length = 533

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQK----IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           FD +S+   P     LQ+    +    + +   + + GHTD+   R    +N  LS  RA
Sbjct: 139 FDTNSAELKPFHKSQLQQWEQGLTSSKSLTPPSVRVEGHTDS---RGTDENNMTLSERRA 195

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
            S  + L++  G S DR   I  +   +L  + +     + NRR++I+
Sbjct: 196 TSVKKHLVEELGASSDRFDIIP-YGESQLTASEETEEGRALNRRVEIV 242


>gi|269966185|ref|ZP_06180275.1| putative protein F-related protein [Vibrio alginolyticus 40B]
 gi|269829332|gb|EEZ83576.1| putative protein F-related protein [Vibrio alginolyticus 40B]
          Length = 224

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 70/180 (38%), Gaps = 11/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
             KS  +  +      S   + +  R  +    + K S  ++ L        +  ET   
Sbjct: 48  APKSNTELRHPEWGYPSASNVASSPRSYQTARASVKKSQNVTSLEMFLSRHNIPHETLSG 107

Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
           G ++I + +  +   F   S+    ++   ++ IG  LA  +   + I GH D++     
Sbjct: 108 GHLMIRLKEHVH---FQTGSARLSAQSQDWIRNIGHYLAGRTDVDVVIDGHADST---GA 161

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              N  LS  RA    + L+ + +   R+    GF  +  K ++   +    NRR+++ +
Sbjct: 162 ESFNDTLSEKRAREVEKQLLATSIPRQRVFS-RGFGEYVPKCSNATASGKACNRRVELTL 220


>gi|300772840|ref|ZP_07082709.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759011|gb|EFK55838.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 655

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L ++   L  +    I +  HTD+   R   + N +LS +RA +A   ++  
Sbjct: 554 IRADAKPILNQLVNTLRDNPTLKIELSSHTDS---RATHKYNMKLSQNRAQAAVDYIVSR 610

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ DRI    G+   RL          SD  + ANRR +I V +
Sbjct: 611 GIARDRIVA-KGYGETRLVNKCADGVKCSDEEHQANRRTEIKVLE 654


>gi|296238955|gb|ADH01478.1| OmpA family protein [Pseudomonas sp. 2663]
          Length = 535

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290
           R+   FD   +    +    ++++G   A     + + GHTD  P R     +N  LS  
Sbjct: 377 RSDGAFDVGKAQVRTDFERNIERLGAAFAPWPGDLEVIGHTDRQPIRTSEFGNNQALSEA 436

Query: 291 RAYSAYQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
           RA +    L ++ +            R    SG    +   ++    +   NRR+D+L
Sbjct: 437 RARTVADELRRTALPGGAQAPGNAVQRNIGFSGRGDTQPIDSAQTPAAYERNRRVDVL 494


>gi|163753666|ref|ZP_02160789.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
 gi|161325880|gb|EDP97206.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
          Length = 626

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN-SVDLKIGSTNQKKQYQRL 127
            + F   +   S G       P  S+ +    + DE   K      + G       Y+  
Sbjct: 353 LDVFASKVKGDSYGAVRNLGTPLNSNSDDFSFTFDEETKKGFVASNRDGGKGSDDIYEVT 412

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             N     +       K +    S     L             +         E   + +
Sbjct: 413 LINPICDVDYVVVVTDKETGAALSGANVVLADDQGNSVGSKTTDAEGKVTFKVECDKSSR 472

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            +  +Q     +   +     D+  K V         +I  +   N   FD        +
Sbjct: 473 LEATIQ---GYVPQQVDVNSGDDPTKLVEIPLAPIEEIIEDVIVLNPIYFDFDKHNIRQD 529

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L K+  V+      VI +  HTD    R  A  N RLS  RA S  Q ++  G+  
Sbjct: 530 AAFELDKVVNVMTKYPNMVIKVETHTD---IRGSASYNQRLSERRAKSTVQYIISKGIDA 586

Query: 307 DRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341
            R+S   G       I      ++  +  NRR D ++  +
Sbjct: 587 SRLSS-EGKGESSPLIDCGNKCTEEEHQQNRRSDFIIVSK 625


>gi|126733987|ref|ZP_01749734.1| OmpA family domain protein [Roseobacter sp. CCS2]
 gi|126716853|gb|EBA13717.1| OmpA family domain protein [Roseobacter sp. CCS2]
          Length = 312

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+         LQ + + LA +    +++ GHTD+         N  LS  RA S 
Sbjct: 206 FETGSAQLAAGNYASLQALADYLAGAPQLRVALVGHTDS---SGSLEANIALSKRRAASV 262

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
            + L+ + G S  +I    G  +      +  +    ANRR++++V   Q
Sbjct: 263 LERLVSAYGTSRGQIEA-EGMGYLAPIAPNLTEEGREANRRVEVIVTSTQ 311


>gi|328473002|gb|EGF43850.1| putative lipoprotein [Vibrio parahaemolyticus 10329]
          Length = 219

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 115 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 171

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 172 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 219


>gi|114765941|ref|ZP_01444955.1| OmpA/MotB domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114541755|gb|EAU44793.1| OmpA/MotB domain protein [Roseovarius sp. HTCC2601]
          Length = 248

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 79/264 (29%), Gaps = 45/264 (17%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
             +    K +F+E           + L   + +T  S   ++ +T               
Sbjct: 23  TEIFQRQKQVFEEAETSGLGQTRGLKLITVQDVTAESAAPEVAATEPAAPS-----APEL 77

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
              + Q       L   S  G+ +  S   + +  +  +   P L+      M       
Sbjct: 78  QQTAPQVATTAPELAAPSGSGQGVSISASSDSAPQRPADPNRPLLAAASDAPM------- 130

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                    + G +A  +   +  E                  F   S+    +    LQ
Sbjct: 131 ---------VFGQLAPELQVNLHIE------------------FGFDSAAISDDQKPKLQ 163

Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA-YSAYQVLMKSGVSEDRISK 311
            +   L  +    I I GHTD+         N  LS+ RA   A  ++ + G+   R+  
Sbjct: 164 TVCMALMAADVGKIRIVGHTDS---AGSDAYNETLSVLRAKEVARNLIEECGLPPSRLET 220

Query: 312 ISGFAHHRLKIASDPMNSANRRID 335
           + G         ++P    NRR++
Sbjct: 221 V-GMGERFPFNEANPRADENRRVE 243


>gi|224532865|ref|ZP_03673480.1| outer membrane protein [Borrelia burgdorferi WI91-23]
 gi|224512254|gb|EEF82640.1| outer membrane protein [Borrelia burgdorferi WI91-23]
          Length = 381

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKHPKSSPLKAKNRRVEITILN 380


>gi|254487047|ref|ZP_05100252.1| OmpA family protein [Roseobacter sp. GAI101]
 gi|214043916|gb|EEB84554.1| OmpA family protein [Roseobacter sp. GAI101]
          Length = 191

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   S    P+    L +  +     + +IS  GHTD+   R     N +LSL+RA S 
Sbjct: 93  FFKTDSYRIHPQGKARLAEFFKSTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANSV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             +  +SG    RI+ + G+       ++      + NRR++I+
Sbjct: 148 AAIAQQSG---ARIADVRGYGERIPAASNSTAAGMAKNRRVEII 188


>gi|120556561|ref|YP_960912.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326410|gb|ABM20725.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 401

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 214 GVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271
           G   + T   GI  ++        F  +SS+        ++++ + +    E  + I GH
Sbjct: 272 GATVDETGCEGITETVETIELRVQFPTNSSVIDNAYDNEIRRVADFMEEYPETTVEIAGH 331

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MN 328
           TD+      A  N  LS  RA +    L    GV  DR+S + G+        +D     
Sbjct: 332 TDS---AGEAGYNQFLSQRRAEAVAGRLTGPLGVDPDRVSAV-GYGEAEPVATNDTPAGR 387

Query: 329 SANRRIDILVEDRQ 342
           + NRR++  ++ R+
Sbjct: 388 AQNRRVEARIQVRR 401


>gi|323499085|ref|ZP_08104065.1| outer membrane protein [Vibrio sinaloensis DSM 21326]
 gi|323315920|gb|EGA68951.1| outer membrane protein [Vibrio sinaloensis DSM 21326]
          Length = 278

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 91/278 (32%), Gaps = 32/278 (11%)

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            L+ +   I    + PE+ S    +  I  + T    D  +G                  
Sbjct: 9   ALIASVASIIGCSSYPEQGSGGLGENYIQSNFTPVMPDEPLG------------PEHGLR 56

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQ 193
            + Q ++   ++L R+  +           +  N+        L  +    +  ++KRL 
Sbjct: 57  FDWQLAKLHLDALIREGARWCFPAAVVQAIEKQNRIARELEGGLLLDAANDIVIQRKRLN 116

Query: 194 DLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +L  ++    S        D                +  ID +    F  +S+   P+ +
Sbjct: 117 ELELQLDYVTSQARCVPPVDEGAFHQRLAVIDQLFNLLNIDNQ----FAFNSAEINPKYM 172

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K   +L       +S+ GH D+    +I   N  L++DRA    + L   G+S  R
Sbjct: 173 GHLAKAANILTEHPSLALSVTGHADS--VGDIEY-NQNLAMDRAQQVKRYLSIFGLSPTR 229

Query: 309 I--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           I    +            +       NRR+ I V D Q
Sbjct: 230 IETHSV---GDTLPLYEGESEGVRLTNRRVSIEVVDTQ 264


>gi|313203341|ref|YP_004041998.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312442657|gb|ADQ79013.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 662

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + L    +V+   F        IS   Q     ++       P +   LQ + ++L  + 
Sbjct: 494 TSLSTQGLVESKTFNVDFKLSAISKPIQIENIFYESGKWELTPASENGLQVLVKLLNDNP 553

Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            + I I  +TD         DN  LS  RA S    L+   ++ DR++ + G+   +  +
Sbjct: 554 NITIEISANTD---LVGSNADNKALSTKRAKSVVDYLISKKIAPDRLTSV-GYGEEKPVV 609

Query: 323 ASDPMN 328
               M 
Sbjct: 610 VDAAMA 615


>gi|28898041|ref|NP_797646.1| putative lipoprotein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308094661|ref|ZP_05890745.2| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308095662|ref|ZP_05907484.2| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308125455|ref|ZP_05775378.2| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|308126686|ref|ZP_05911817.2| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28806255|dbj|BAC59530.1| putative lipoprotein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088657|gb|EFO38352.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308091164|gb|EFO40859.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308107632|gb|EFO45172.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308115580|gb|EFO53120.1| outer membrane protein [Vibrio parahaemolyticus K5030]
          Length = 222

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 118 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 174

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 175 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222


>gi|332292958|ref|YP_004431567.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171044|gb|AEE20299.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 640

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +           LQ+I +++      +I I  HTD    R  A  N  LS +RA S 
Sbjct: 530 FESNRYAINIFAAQQLQRIIDIMNEYPALIIKIESHTDQ---RGGASYNQTLSENRATST 586

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILVEDR 341
              L+K+G++  RI    GF   R     D  +          NRR D +V  R
Sbjct: 587 RDYLIKNGITSSRIESAKGFGESRPIHICDEADDSCTEVQYLENRRSDFIVVSR 640


>gi|294783612|ref|ZP_06748936.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480490|gb|EFG28267.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA]
          Length = 141

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S+  P+   +L  + + +  +   ++I GHTD+       + N  
Sbjct: 28  TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIG 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           LS  RA +    L++ G+ EDRI  I           ++       NRR++  +  R
Sbjct: 85  LSRRRAEAVKAKLIEFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 141


>gi|227537401|ref|ZP_03967450.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242779|gb|EEI92794.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 655

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L ++   L  +    I +  HTD+   R   + N +LS +RA +A   ++  
Sbjct: 554 IRADAKPILNQLVNTLRDNPTLKIELSSHTDS---RATHKYNMKLSQNRAQAAVDYIISR 610

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ DRI    G+   RL          SD  + ANRR +I V +
Sbjct: 611 GIARDRIVA-KGYGETRLVNKCADGVKCSDEEHQANRRTEIKVLE 654


>gi|116329523|ref|YP_799243.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329838|ref|YP_799556.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122267|gb|ABJ80310.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123527|gb|ABJ74798.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 684

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+ + +    E   +L  + + +L ++++ I I GHTD     +    N RLS  RA
Sbjct: 580 RVYFEFNKTKITNENKKLLDPLVDYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRA 636

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
            + Y+  +  G+SE R+ KI  + + +    ++     + NRR+
Sbjct: 637 RNVYEYFLSKGISEKRM-KIRAYWYSQPDADNETEIGRAKNRRV 679


>gi|326794724|ref|YP_004312544.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545488|gb|ADZ90708.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 304

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
           R   +F  + +         L  +   + +   +  I I GHTD        RDN  LS 
Sbjct: 183 RTAALFPTNGADLTDRIKHRLDLVALYVNNDPSIQYIYIDGHTDTI---GSRRDNRELSK 239

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
            RA      L++ GV  D I             +  ++     NRR+ I +E 
Sbjct: 240 KRAEKITAYLLEQGVPADMIVS-RYHGERYPVASSRTNQGRERNRRVTIRLER 291


>gi|104779940|ref|YP_606438.1| outer membrane lipoprotein [Pseudomonas entomophila L48]
 gi|95108927|emb|CAK13623.1| putative outer membrane lipoprotein (OmpA domain) [Pseudomonas
           entomophila L48]
          Length = 166

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            D     +F          +  ++++IG+ L     + + I GH DA      A  N +L
Sbjct: 55  FDLSGKVLFGSDLDSLNSASESIVERIGKALLSVDIQRVRIDGHADA---SGKAAYNQQL 111

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           S  RA S  + L+  G+    I +  G    +    +        NRR+ I+V
Sbjct: 112 SERRAQSVAKALIGIGMQPQNI-QTRGLGSSQPVADNRTSTGRMENRRVSIVV 163


>gi|315124911|ref|YP_004066915.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018633|gb|ADT66726.1| outer membrane fibronectin-binding protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 319

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + ++D     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNSRSSNDTKEGRADNRRVD 313


>gi|90412166|ref|ZP_01220172.1| Conserved hypothetical outer membrane protein [Photobacterium
           profundum 3TCK]
 gi|90326890|gb|EAS43275.1| Conserved hypothetical outer membrane protein [Photobacterium
           profundum 3TCK]
          Length = 220

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
              F   S    PE+  VL+ I + L +S + +++ GHTD+         N+ L L RA 
Sbjct: 118 RVYFAFDSQHLTPESQTVLKTIAQKLKNSPQTVTLNGHTDSV---GPQGYNYTLGLQRAK 174

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           S+ Q L+ + V +  +   + +   +   ++      + NRR+D++
Sbjct: 175 SSMQYLIDNEVKDTNLKSKT-YGETQPIESNTTSQGRAMNRRVDVV 219


>gi|209965626|ref|YP_002298541.1| OmpA family protein [Rhodospirillum centenum SW]
 gi|209959092|gb|ACI99728.1| OmpA family protein [Rhodospirillum centenum SW]
          Length = 314

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 50/233 (21%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              EK  DL +  ++     +          + + L     + +  L + I S  S  + 
Sbjct: 43  NAEEKVVDLSRYEEVVNEARRLTEEAAKQKQENEELRRLLTQAVAQLERDIESRRS--MR 100

Query: 209 DNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           + +++ +     R G+ ++      I+      +F+   ++   E    ++ + ++L   
Sbjct: 101 NQMLQSLEASLDRQGVRVTLDPESGILRLSGDLLFETGKAVYREEADRTVKVMADILGSV 160

Query: 263 ------------TEV-------ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQV 298
                                 + + GHTD  PFRN+        N RLS +RA + +Q 
Sbjct: 161 LPCFAEGASVACPGERMPILEAVLVEGHTDRQPFRNVPPAQSQALNDRLSTERALAVFQS 220

Query: 299 LMK-----------SGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDI 336
           L +           SG     +  +SG+   R        ++     NRRID+
Sbjct: 221 LRETSPVLETLRNPSGQP---LLGVSGYGERRPLPEAQGTTEEDYRRNRRIDL 270


>gi|46201868|ref|ZP_00208284.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 262

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARD 283
           I+ +   N   FD  S   L     V+  I  +++   +   I + GHTD+         
Sbjct: 14  IARVSFSNQIFFDSDSDRILKSGESVIGAISRLISADQTKPHIMVIGHTDS---SGGDLY 70

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           N  LS  RA +    L+  GV  + I ++ G    +   ++      + NRR++ L+  R
Sbjct: 71  NLELSRRRAEAVAAQLVLQGVPHEHI-QLVGMGKSQPVASNSTAAGKAQNRRVEFLISAR 129

Query: 342 Q 342
           +
Sbjct: 130 R 130


>gi|78061292|ref|YP_371200.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77969177|gb|ABB10556.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 220

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           ++     +F    +   P     L ++    A  T   +S+ G TD+         N  L
Sbjct: 110 VNLSGDALFATDHATLAPTARESLDRLLSERADHTYSQVSVTGFTDSV---GSDDYNLAL 166

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDILVE 339
           S  RA S    L   G+  D ++ ++G   A      A+    ++NRR++I ++
Sbjct: 167 SKRRAESVATYLKAHGLKTDSLT-VTGRGKADPVASNATPEGRASNRRVEIRLQ 219


>gi|83592206|ref|YP_425958.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83575120|gb|ABC21671.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 220

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+ +S+  L +++  L +IG +L   + +I  I GHTDA+     +  N  LS  RA +
Sbjct: 118 LFEINSAEILVKSLPYLNQIGTLLREESALILVIEGHTDAN---GPSDYNLALSRKRAEA 174

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
               L+ S  +   R+ +  G     L   S P +  NRR+
Sbjct: 175 VADYLIGSFAIPPARL-RTEGKGESALLRPSSPTHPDNRRV 214


>gi|319426005|gb|ADV54079.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 289

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++  +     +   L ++ E LA+   V  + +  +TD+   R++   N R+S +RA S
Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             +  + SG+ +DRI  + G    R   +++     + NRR+ I +
Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285


>gi|221209716|ref|ZP_03582697.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221170404|gb|EEE02870.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 405

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
             +R      LA+ +   L   VA   V+ +            ++  R   MF   +   
Sbjct: 252 EAQRLSPFDALARNLEQRLRDEVAAGNVELIRDPARH------VLTLRFAGMFVPGAMTV 305

Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301
            P    V+   G  +A   E  V+ + G+ D++P  +  +  N  +S  RA    ++L+ 
Sbjct: 306 APWGASVVASAGREIASIAEGAVVRVVGYADSAPAGSARQVSNQAISEARAEDVARILVA 365

Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +GV      ++ G         +  +   + NRR++++V
Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403


>gi|146292701|ref|YP_001183125.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145564391|gb|ABP75326.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 289

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++  +     +   L ++ E LA+   V  + +  +TD+   R++   N R+S +RA S
Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             +  + SG+ +DRI  + G    R   +++     + NRR+ I +
Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285


>gi|75676006|ref|YP_318427.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74420876|gb|ABA05075.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        ++   L +I ++L    E  + I GHTD+   +     N  LS  RA S
Sbjct: 216 LFDFDKDTMRSDSKPQLDEIAKLLKAQPELKVLIVGHTDS---KGALDYNRDLSYRRARS 272

Query: 295 AYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
             + L +  GV+  R++ +  G A       ++   + NRR++++
Sbjct: 273 IVESLSREHGVAAARLTPLGVGMAAPMATNRTEEGRALNRRVELV 317


>gi|86141593|ref|ZP_01060139.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Leeuwenhoekiella blandensis MED217]
 gi|85832152|gb|EAQ50607.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Leeuwenhoekiella blandensis MED217]
          Length = 224

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K++   A++I   + G            E    GI+++  D+ +   F  +       + 
Sbjct: 70  KKMDKQAQRIEEEIPGA---------EVERVDDGIVVN-FDENSGVYFATNKYNINSASQ 119

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L  +  V+    +  + + GHTD++     A  N  LS +RA +    L+  G++  R
Sbjct: 120 ETLNGLSRVMQEYPQTNVLVVGHTDST---GSADYNMTLSKNRAQAVTNYLVSQGIASGR 176

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +    +   + K  ++     S NRR+ + +   Q
Sbjct: 177 FT-TQWYGEEQPKYTNETAEGRSKNRRVTLAIVPNQ 211


>gi|120599225|ref|YP_963799.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120559318|gb|ABM25245.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
          Length = 289

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++  +     +   L ++ E LA+   V  + +  +TD+   R++   N R+S +RA S
Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
             +  + SG+ +DRI  + G    R   +++     + NRR+ I +
Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285


>gi|91794084|ref|YP_563735.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91716086|gb|ABE56012.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 377

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                +FD  S++  P     ++ +G+ L       + I GH            N  LS 
Sbjct: 260 DLGKVLFDNDSAVIKPGYYADMEILGDHLVKYPAHTVIIEGHASNV---GKPDYNMSLSE 316

Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            RA +    LM K G+S  RI  + G+   + K+A +   +   NRRI+ +V
Sbjct: 317 RRAQAVATALMTKYGISASRIKSV-GYGVTKPKMAGNTAEAHRVNRRIEAIV 367


>gi|296130397|ref|YP_003637647.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022212|gb|ADG75448.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
          Length = 355

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 8/182 (4%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             +  +E    +       P   +   A+   + L     +  + +    + ++   V  
Sbjct: 173 AGAVPVEDGALEPVADEPAPRPGQGWPALPDPELLATADPEERTFVLTRRSSDLAGDVQV 232

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASP 276
           E +   + I +     + +F   S+   PE    L ++  ++ A  T  + + G+TD+  
Sbjct: 233 EESPEQVGIVL---DASVLFAFDSAELAPEAQSRLAEVAADIAARGTGEVVVTGYTDSD- 288

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
                  N  LS  RA S    L  +       S +  G +       +D    ANRR+ 
Sbjct: 289 --GDRSYNQTLSEQRAQSVVAALQPAAGGAVTFSAVGEGESDPVASNDTDEGKQANRRVT 346

Query: 336 IL 337
           I+
Sbjct: 347 IV 348


>gi|206562090|ref|YP_002232853.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
 gi|198038130|emb|CAR54078.1| putative outer membrane protein [Burkholderia cenocepacia J2315]
          Length = 239

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P+    L +  ++ +      ++I G TD++        N  LS  RA + 
Sbjct: 136 FAFDSAALTPDARAQLDRFVDINSGIEFRRVAITGFTDST---GSNTHNLALSASRARNV 192

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
              L  +G+          G A      A+    + NRR++I ++ +
Sbjct: 193 MNYLRSNGLKAQSFVSEGLGAADPVASNATAEGRAQNRRVEIRIDAK 239


>gi|302184719|ref|ZP_07261392.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 300

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +             ++   + NRR+ + +E 
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVSVHLER 281


>gi|255531961|ref|YP_003092333.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255344945|gb|ACU04271.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 631

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F+ +    LP ++  L  + ++L  +++  I I+GHTD        + N RLSL R
Sbjct: 524 KNIFFNTNEYTLLPASLTELNTLQQLLKNNASLCIEIQGHTDNV---GNDQQNERLSLQR 580

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A + Y  L++  +   R++   G+  ++   A+D       NRR   ++
Sbjct: 581 AKAVYDYLVQEKIEPQRLT-FKGYGENKPIAANDTDAHRRQNRRTSFII 628


>gi|91226490|ref|ZP_01261239.1| putative lipoprotein [Vibrio alginolyticus 12G01]
 gi|91189122|gb|EAS75403.1| putative lipoprotein [Vibrio alginolyticus 12G01]
          Length = 219

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 115 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 171

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 172 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 219


>gi|320156521|ref|YP_004188900.1| outer membrane protein-like peptidoglycan-associated (lipo)protein
           [Vibrio vulnificus MO6-24/O]
 gi|319931833|gb|ADV86697.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Vibrio vulnificus MO6-24/O]
          Length = 208

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+   +     A  N  LS  RA
Sbjct: 83  RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 139

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            +  ++L+  G+++ R+ +I GF    L      +  ++ NRR+
Sbjct: 140 NNVREMLIGYGIAQSRV-RIVGFGDSALASEGTDEVSHALNRRV 182


>gi|312200527|ref|YP_004020588.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
 gi|311231863|gb|ADP84718.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
          Length = 188

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD  S   +P+    ++KI   +      + I G TD          N  LS  RA + 
Sbjct: 91  LFDVGSDKLVPDAAAEIEKIVPAIQTHDGPVQILGFTDGV---GTDSYNQDLSQRRADAV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             +L+ +GV    +  I   +        D      R+++I+++
Sbjct: 148 KAILVGAGVKASLLQAIGKGSDGAPAGVPDSTR---RKVEIVLK 188


>gi|92114381|ref|YP_574309.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91797471|gb|ABE59610.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 830

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 21/198 (10%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
            +         +E       +  ++    ++    D+ +  S+      + N +  +L +
Sbjct: 640 PAIQRRTGAEIDEGRADYRYAGRQVDFYSQQIHASDVPRITSNAFLVSSSRNYIDSLLEQ 699

Query: 219 TTRTGILISIIDQRNTPMFDKSS---SIPLPETIVVLQKIGE-VLAHST-EVISIRGHTD 273
           T  +   I +    +  +F       +         L K+ E +L       I I GH D
Sbjct: 700 TLTSTETIVL---ESDTLFAFGRGDYAGLQQAGQQELDKLAERLLNTQDLGQILITGHAD 756

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330
             P  N A  N +LSL RA +  Q L+  GV    + +  G    R  +  D        
Sbjct: 757 --PIGNEAA-NQQLSLQRAMTVRQYLIGKGVPAG-LIEAKGAGSERPLVTCDDDQPRAQL 812

Query: 331 ------NRRIDILVEDRQ 342
                 NRR++I V  +Q
Sbjct: 813 IECLAPNRRVEIEVRKQQ 830


>gi|329890560|ref|ZP_08268903.1| ompA family protein [Brevundimonas diminuta ATCC 11568]
 gi|328845861|gb|EGF95425.1| ompA family protein [Brevundimonas diminuta ATCC 11568]
          Length = 191

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            ++   ++  F  + +   PE    L ++ + L    +   + I+GHTD++      + N
Sbjct: 78  EVVLSDDSVKFPVNHTELSPEAEQRLAELVQRLRAENANVYLEIQGHTDST---GNDQIN 134

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            RL  +RA +  + L   G++ +R++ IS +   +    ++     + NRR+ I+V 
Sbjct: 135 ERLGQERAEAVRRFLSDQGIALNRMATIS-YGASKPVAPNNTREGRAQNRRVAIMVL 190


>gi|292488104|ref|YP_003530981.1| putative type VI secretion system core protein [Erwinia amylovora
           CFBP1430]
 gi|292899316|ref|YP_003538685.1| outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199164|emb|CBJ46278.1| putative outer membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553528|emb|CBA20573.1| putative type VI secretion system, core protein [Erwinia amylovora
           CFBP1430]
 gi|312172236|emb|CBX80493.1| putative type VI secretion system, core protein [Erwinia amylovora
           ATCC BAA-2158]
          Length = 407

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 9/176 (5%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGIL 225
           + +     L  + +  +  +   KR      +IS  L   ++D I    +       G  
Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKRGA--VPQISFDLRQRLSDLIASHQLNVTEGDYGNR 278

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DN 284
           + +       +F    +   PE   ++ ++   +      + I  +TD     +     N
Sbjct: 279 VIL---PADSLFSPPGTELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFTSN 335

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  S  +A +   ++M+         +  G A  R  + +      + NRR++I +
Sbjct: 336 YEYSAAQAQAISNMMMQLIAQPCINVRAEGRADSRELLPNSSAHNRAQNRRVEITL 391


>gi|86132811|ref|ZP_01051403.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85816765|gb|EAQ37951.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 368

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           + +S+   P    ++  ++  +LA +    + I  HTD+   R  A  N  LS  RA S 
Sbjct: 260 NTNSATLTPAAKNIIDTRLMPLLAENPGVKLEIASHTDS---RGAASSNQDLSERRAQSV 316

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              L+  GV+   +   +GF   +LK         ++  ++ANRR +  + +
Sbjct: 317 ANYLISKGVNNS-LLVANGFGERKLKNRCADGVSCTERQHAANRRTEFRLIN 367


>gi|163784522|ref|ZP_02179384.1| flagellar motor protein MotB-like protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880208|gb|EDP73850.1| flagellar motor protein MotB-like protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 234

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +D+AK I   L  ++    +     ++    +LI +    N   F + S     E    L
Sbjct: 74  EDVAKIIKKRLERIL---PIYAYQIDSIENYVLIRLF---NDIAFKEDSYQLTDEAKKAL 127

Query: 253 QKIGEVLAHSTE---VISIRGHT---DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
            +I + +   +     I + GH    + S      +D W LS+ RA     +L+K+G+ +
Sbjct: 128 NEIAKKIKKYSGYFDEIRVVGHAYVKNKSKLPRGIKDAWDLSIKRAEVIADILIKNGIKK 187

Query: 307 DRISKISGFAHHRLKIA-SDPMNSA-NRRIDILVEDRQ 342
           D+I  +  + + +      +P+    N R++I +  +Q
Sbjct: 188 DKIV-LEAYGNKKPIYRWKNPILQRMNDRVEIYLNVKQ 224



 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +K   +       +W I ++D M++L+ FF++++ +   D         YF       
Sbjct: 1   MARKKKEECPA--APAWLISFSDLMSLLLTFFILLYAMTVLDIKKLMKFLWYFQGERPLE 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T +  +    +  +      I   ++  +   +   +I S       +   +  F   +
Sbjct: 59  TTKTVAVIPPISMMKEDVAKIIKKRLERILPIYA--YQIDSIENYVLIRLFNDIAFKEDS 116

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN----KEENYFLPPLSKEKILAMKRKKRL 192
            Q ++  K +L   ++K K      D  + +     K ++     +     L++KR + +
Sbjct: 117 YQLTDEAKKALNEIAKKIKKYSGYFDEIRVVGHAYVKNKSKLPRGIKDAWDLSIKRAEVI 176

Query: 193 QDL 195
            D+
Sbjct: 177 ADI 179


>gi|146282405|ref|YP_001172558.1| outer membrane protein OprF precursor [Pseudomonas stutzeri A1501]
 gi|145570610|gb|ABP79716.1| outer membrane protein OprF precursor [Pseudomonas stutzeri A1501]
          Length = 315

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276
           E     + + + D +    FD   S    E+   ++ + + +    +  ++  GHTD+  
Sbjct: 195 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 248

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                + N RLS  RA +   VL+ + GV  +R++ + G+   R     +++     NRR
Sbjct: 249 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 305

Query: 334 ID 335
           ++
Sbjct: 306 VE 307


>gi|152994404|ref|YP_001339239.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835328|gb|ABR69304.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 359

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 29/275 (10%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--NQKKQYQRL 127
           N      + A  G  D  N     +         ++   ++V L+      N  + +   
Sbjct: 103 NVNLTPYLAAGVGTTDFSNASGHDNVQVNAGGGLKYALNDTVSLRADFRLVNDVEDHHLD 162

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                 +  +       ++   D     +    T +E +   ++      +S E    ++
Sbjct: 163 NVTSLGVQMTFGGSSRNSTSNDDDYTPVEQTSYTQVEPAAQPQQATQPEVISSEPAEQVQ 222

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            +              +  +A+   +         G  I+I        F  + +    +
Sbjct: 223 EEP-----------ITASPMAEETTQQPEIVAEPPG-KINIQ-------FGLNKTNVEQK 263

Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
               ++KI   L  +    + I GHTD       A  N +LS  RA +  +VL  +  +S
Sbjct: 264 FYPEIEKIAIFLKENPGSTVMIEGHTDN---SGAASYNQKLSEKRAKAIAEVLTNTFEIS 320

Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             R+  I G+   R  + +D      ANRR+  ++
Sbjct: 321 ATRVEAI-GYGEERPFVENDTEAHREANRRVVAII 354


>gi|159042678|ref|YP_001531472.1| OmpA/MotB domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157910438|gb|ABV91871.1| OmpA/MotB domain protein [Dinoroseobacter shibae DFL 12]
          Length = 310

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
            + + D R    F   ++         L  +   L  + + VI++ GHTDA         
Sbjct: 198 RVVLEDLR----FATGNATLENGQYPSLTALAGFLTENPDLVIALVGHTDAE---GSIDA 250

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           N  LS+ RA +    L+   GV+ +R+     G+   R    ++    ANRR++ ++
Sbjct: 251 NLALSMRRAEAVRDRLVADYGVASERLRAEGVGYLAPRATNRTEEGRRANRRVEAVL 307


>gi|256027094|ref|ZP_05440928.1| Outer membrane protein [Fusobacterium sp. D11]
 gi|289765073|ref|ZP_06524451.1| outer membrane protein [Fusobacterium sp. D11]
 gi|289716628|gb|EFD80640.1| outer membrane protein [Fusobacterium sp. D11]
          Length = 151

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S+  P+   +L  + + +  +   ++I GHTD   +
Sbjct: 6   EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 60

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                 N  LS  RA +    L++ G+   RI  I            A+    + NRR++
Sbjct: 61  IASNAYNMGLSKRRAEAVKAKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 120

Query: 336 ILVEDR 341
             +  R
Sbjct: 121 FKLVKR 126


>gi|163741717|ref|ZP_02149107.1| OmpA family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384890|gb|EDQ09269.1| OmpA family protein [Phaeobacter gallaeciensis 2.10]
          Length = 183

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F  +           L++  +     +    I GHTD+   R     N RLS  RA + 
Sbjct: 85  FFATNRHRISAAGQQRLREFFQTANARS--FIITGHTDS---RASDEYNMRLSQRRANAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +V    G    RI ++ G+     ++ +D     + NRR++I+
Sbjct: 140 AKVGQSVG---ARILEVRGYGERDPRVPNDSAANMAQNRRVEII 180


>gi|118616129|ref|YP_904461.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99]
 gi|118568239|gb|ABL02990.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99]
          Length = 332

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P++  VL ++ + L    +  +++ G+TD          N  LS  RA + 
Sbjct: 231 FGNDGVSLTPDSNKVLTQVVDKLRACPDAKVTVNGYTDN---SGSEGLNIPLSAQRAQTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L+  GV+ D I+   G        ++D       NRR++I+V
Sbjct: 288 ADFLVAHGVATDHITA-KGLGSANPIASNDTAEGRIKNRRVEIVV 331


>gi|326797243|ref|YP_004315063.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326548007|gb|ADZ93227.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 201

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD    +  P     ++K+ + +  +    + I GHTD       A  N  LS +RA +
Sbjct: 80  LFDSGKYVVKPRFYGEVKKLADFMKSNAGSSVVIEGHTDDV---GAADYNEALSQNRADA 136

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
              VL+ S  +   R+  I G+   +    ++     + NRR+
Sbjct: 137 IADVLINSFKIDRKRVEAI-GYGESKPIADNETIDGRATNRRV 178


>gi|294789485|ref|ZP_06754721.1| outer membrane porin F [Simonsiella muelleri ATCC 29453]
 gi|294482565|gb|EFG30256.1| outer membrane porin F [Simonsiella muelleri ATCC 29453]
          Length = 307

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
             + I +       +FD   S    +    ++++ E +       +++ GHTD+   R  
Sbjct: 187 EKVTIEL-----KVLFDTDKSFVKSQYYSEIEQVAEYMKRFPNTSVTLEGHTDS---RAS 238

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS-DPMNS-ANRRI 334
              N  LS  R  +   +L++  G+   R+  + G+   R    +  P N   NRR+
Sbjct: 239 DEYNIGLSQRRMNAVRDILIRRYGIDGARVHAV-GYGESRPAYPNTTPENMHQNRRV 294


>gi|262394500|ref|YP_003286354.1| outer membrane protein [Vibrio sp. Ex25]
 gi|262338094|gb|ACY51889.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 222

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 118 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 174

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 175 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222


>gi|163745845|ref|ZP_02153204.1| OmpA family protein [Oceanibulbus indolifex HEL-45]
 gi|161380590|gb|EDQ05000.1| OmpA family protein [Oceanibulbus indolifex HEL-45]
          Length = 231

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        VL++    +    E    + GHTD          N  L + RA + 
Sbjct: 86  FAFNSAQLDATAQAVLRQQAGWIRQFPEIRFRVYGHTD---LVGSQAYNRALGMRRAQAV 142

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  +   +  I +      NRR
Sbjct: 143 VGYLSTLGISPSRLEAVVSYGETQPLIVTQGRERRNRR 180


>gi|86748022|ref|YP_484518.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86571050|gb|ABD05607.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 212

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+    +    ++ +G+ LA+         + GHTD+         N  LS  RA 
Sbjct: 102 FEYNSANISRKAEPAVEALGKALANPDLRGSTFVVAGHTDSI---GSDNYNQDLSERRAD 158

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  +VL++  G++   +  + G+   + K A +P +++NRR+ ++    Q
Sbjct: 159 TIKRVLVEKYGIAGADLVTV-GYGESKPKNADNPTDASNRRVQVVNMTSQ 207


>gi|209964174|ref|YP_002297089.1| OmpA family protein (probable proton motor, MotY) [Rhodospirillum
           centenum SW]
 gi|209957640|gb|ACI98276.1| OmpA family protein (probable proton motor, MotY) [Rhodospirillum
           centenum SW]
          Length = 355

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLD 290
           T  FD   +   P+   VLQ +       T  I+   + GH D       A  N RLS+ 
Sbjct: 251 TVFFDWDKATLTPDAEKVLQSVAA--DARTGGIAALQVTGHADT---SGPADYNQRLSMR 305

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           RA +    L+  G+    I  I G       + +       +NRR  I+
Sbjct: 306 RAEAVRDYLIAQGIPAGEI-AIEGRGETDPLVPTADGVREPSNRRGVII 353


>gi|171315482|ref|ZP_02904719.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171099482|gb|EDT44217.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 170

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 44  ALKSAGFQETGQGFE---FGASGPILFDFDRYNLKPDVRRIVERIGRTLKSAGINGVRVY 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D       A D   LS  RA      L+ +G+   RI+ +  G +       +    
Sbjct: 101 GYSDDE--GEAAYD-LELSRRRAEVVAIELVDAGLDGKRIAVVGKGKSDPVGDNRTPTGR 157

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 158 AQNRRAAIVVSPR 170


>gi|167035658|ref|YP_001670889.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166862146|gb|ABZ00554.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 163

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           D     +F         ++  ++++IG+ L     + + + GH DA      A  N +LS
Sbjct: 53  DLSGKVLFGSDLDSLNGQSQSIVERIGKALLSVGIQGVRVDGHADA---SGKAAYNQQLS 109

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA S  + L+  G+    I    G    +    +        NRR+ I+V
Sbjct: 110 ERRAQSVTKALVGVGMQPQNIQS-RGLGSTQPVADNRTSAGRTENRRVSIVV 160


>gi|329944219|ref|ZP_08292478.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530949|gb|EGF57805.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 464

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S     +   VL  + E +        ++I GHTD          N  LS  RA +
Sbjct: 183 FEVDSDQLSAQADAVLANVVEQIKKYPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
               L K          +SG      ++ +D      ANRR++I +   +
Sbjct: 240 VSSRLKKLTDLSTWNESVSGKGESSPRVPNDSDEHRQANRRVEITLTPSK 289


>gi|262401486|ref|ZP_06078054.1| outer membrane protein A precursor [Vibrio sp. RC586]
 gi|262352307|gb|EEZ01435.1| outer membrane protein A precursor [Vibrio sp. RC586]
          Length = 109

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           MF   S  P  E I  L +I  VL    +    + GHTD++     A  N  +S  RA +
Sbjct: 1   MFGFDSVEPSQEFIDQLTEISSVLISYPQAQAKVVGHTDST---GSALYNQNISEHRAQA 57

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L++ GV+  ++    G    +    ++     +ANRR++I +
Sbjct: 58  VVNKLIELGVTPTQLEW-RGEGEFQPVADNNTAEGRAANRRVEITI 102


>gi|260774918|ref|ZP_05883819.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609173|gb|EEX35331.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 321

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE+ + L+++   +    +  + + G+TD       A  N +LS  RA S 
Sbjct: 212 FKFDSAELTPESEMALKEVASFMGEYPQATVDVVGYTDT---SGPAVYNQKLSEQRAQSV 268

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             V+ + GV++ RI  + G         ++  +    NRR ++ V
Sbjct: 269 ADVIAEYGVNQSRIH-VEGAGESNPIATNETRDGRIENRRAEVTV 312


>gi|260220763|emb|CBA28654.1| hypothetical protein Csp_A08220 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 182

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  +S   P++   L  I E   A +   I + GHTD +      + N  LSL RA + 
Sbjct: 81  FEPGTSTLTPDSQNQLPGILEQATARAGGDIQVVGHTDRT---GSPQANDTLSLQRAQAV 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +L++ G     +  I G       + ++       NRR +I++
Sbjct: 138 RNLLIQRGFEPALVEAI-GRGEREPVVPTEANVNEPRNRRAEIII 181


>gi|239814628|ref|YP_002943538.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239801205|gb|ACS18272.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 217

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+  PE    L  +   +      + I  GHTD+    + A  N RLS+ RA +    L
Sbjct: 114 KSVLKPEGRAKLTDLVSKIRDVNLEVIIAVGHTDS--IGSDAY-NQRLSVRRAEAVKAFL 170

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  G+  +R+    G    +    +      + NRR++I V
Sbjct: 171 VSKGIERNRVY-TEGKGEKQPVADNRTKEGRAKNRRVEIEV 210


>gi|32472143|ref|NP_865137.1| outer membrane protein A (OmpA) [Rhodopirellula baltica SH 1]
 gi|32397515|emb|CAD72821.1| probable outer membrane protein A (OmpA) [Rhodopirellula baltica SH
           1]
          Length = 259

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 14/259 (5%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            QNP        +          N +  ++   N++ Q     N       +Q  +  + 
Sbjct: 4   SQNPYLAGGGTSVWQPPPSTTAVNGIQAQVAELNRRVQLLDDNNRQLTTQLAQSEQQSQ- 62

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KISSTLS 204
                     +L +    + +   E        ++ +  + +   +++  A  + ++ L+
Sbjct: 63  ----VYRDELNLVRKQLSDTTQQYESARIAAQDAQTQARSFQASAQMRGGATIRANTNLN 118

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262
            +     + G+  E     + + +   +   +F + +    P    +L      L     
Sbjct: 119 QMAGRLNLGGLKVEQDGEVLRVVLPSDQ---LFAQGTGQLQPSAGAILDPTAAQLRSVFP 175

Query: 263 TEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHR 319
            + I I G+TD +P +   A    +L+  +  +    L + SG+ E ++  ++ G  + R
Sbjct: 176 RQRIGIEGYTDNAPMYGGAAGSAHQLTSAQTGAVLDWLTRRSGMPEQQLFTVAQGSNNPR 235

Query: 320 LKIASDPMNSANRRIDILV 338
               +     ANRRI++++
Sbjct: 236 KDNTTPAGRVANRRIELVI 254


>gi|325067558|ref|ZP_08126231.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 394

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     +   VL  + E +        ++I GHTD          N  LS  RA +
Sbjct: 113 FATDSDQLSDQADGVLANVVEQIKKFPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 169

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
             + L K          +SG      ++ +D      ANRR++I +   +
Sbjct: 170 VSERLKKLTDLSKWKESVSGKGESSPRVPNDSDEHRQANRRVEITLMPSK 219


>gi|260777706|ref|ZP_05886599.1| protein F-related protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605719|gb|EEX32004.1| protein F-related protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + +  +++ S L +  +  GV +E      I++ + D      F+  SS+  P+++  L 
Sbjct: 60  MGQMRTTSYSDLQSFLLKNGVDYEVLPGNHIMVKLTDTIK---FNTGSSMVKPDSMYWLD 116

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +G  LA      I I GH D++           LS+ RA +  + L+ + V+ + I   
Sbjct: 117 MMGRYLATQPGIDIVIDGHADSTGAPTFNDS---LSMKRAKAVKKQLVSNNVAMNSIY-T 172

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDIL 337
            G+  +    ++        NRR+++L
Sbjct: 173 RGYGEYVPACSNTTSAGKACNRRVEVL 199


>gi|171322789|ref|ZP_02911520.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171091861|gb|EDT37347.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 230

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P     L ++           +++ G+TD+    +   +   LS  RA + 
Sbjct: 125 FDTDRADLTPIARDRLDRLISASRGVRVRTVTVNGYTDS--VGSDDYNV-GLSERRASAV 181

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L   G+S  R     G+       +++     + NRR+++
Sbjct: 182 DAYLQSHGLSAGRFVG-RGYGKADPVDSNETAVGRARNRRVEV 223


>gi|183222583|ref|YP_001840579.1| putative outer-membrane protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912618|ref|YP_001964173.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777294|gb|ABZ95595.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781005|gb|ABZ99303.1| Putative outer-membrane protein; putative signal peptide
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 670

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +      E    L  + + L H     + I GHTD     N    N  LS DRA S 
Sbjct: 568 FPFNERTLSDEDKKKLDLLADFLIHHKNEKVEIGGHTDN--IGNKEY-NINLSEDRALSV 624

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           YQ L   GV ++R+ K+  + + +    ++     S NRR+
Sbjct: 625 YQYLRLKGVPKERM-KVQAYHYSQPIADNETEEGRSRNRRV 664


>gi|254302232|ref|ZP_04969590.1| outer membrane protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322424|gb|EDK87674.1| outer membrane protein [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 196

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S   P+   +L  + E +  +   ++I GHTD   +
Sbjct: 52  EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFITKNDYEVTIVGHTD---Y 106

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
                 N  LS  RA +    L++ G+   RI +            +      + NRR++
Sbjct: 107 IASNEYNMGLSKRRAEAVKAKLIELGLDPSRIVETVARGEEEPVADNSTTEGRAKNRRVE 166

Query: 336 ILVEDR 341
             +  R
Sbjct: 167 FKLVKR 172


>gi|110833683|ref|YP_692542.1| outer membrane protein OprF [Alcanivorax borkumensis SK2]
 gi|110646794|emb|CAL16270.1| outer membrane protein OprF [Alcanivorax borkumensis SK2]
          Length = 384

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +     +   L+ + E +       + + GHTD++     A  N +LS  RA + 
Sbjct: 273 FGHDKTEVRQTSYPSLENLAEDMRQYPSANLVLEGHTDST---GSAAYNKKLSQQRADAV 329

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
             VL+   GVS DRI+ + G+   +      +    + NRR++ +++
Sbjct: 330 KAVLVDKFGVSADRITTV-GYGEEKPISDNKTSEGRAENRRVETILK 375


>gi|254522358|ref|ZP_05134413.1| OmpA domain protein [Stenotrophomonas sp. SKA14]
 gi|219719949|gb|EED38474.1| OmpA domain protein [Stenotrophomonas sp. SKA14]
          Length = 432

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   ++    ++   +  +   L        + +  HTD+      A  N +LS  RA +
Sbjct: 329 FHAGTATLTGDSRQTIGAVASALRAVPAGARVEVAAHTDS---AGSATTNQQLSQLRAEA 385

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             Q L + GV    +   +G+   +    +  D   + NRRI 
Sbjct: 386 VAQALQEQGVGSAALVP-TGYGQEQPIADNRSDHGRALNRRIS 427


>gi|163801699|ref|ZP_02195597.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4]
 gi|159174616|gb|EDP59418.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4]
          Length = 244

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234
            L ++  ++  D+   I       +A  NI+  V  E  +  +++ I D         +T
Sbjct: 40  ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99

Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283
             F    SSIP   T    L+ IG VL  + +          + I GHTD+       + 
Sbjct: 100 LTFASGKSSIPNDATIQQALKDIGVVLHSAIQKKDRFQYLDTVFIEGHTDSDGIHYRGKG 159

Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329
           NW LS DRA S + V           G  E+    ++  +SG+A  R   L+ ++    S
Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKS 219

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 220 QNRRIDI 226


>gi|13472828|ref|NP_104395.1| hypothetical protein mll3244 [Mesorhizobium loti MAFF303099]
 gi|14023575|dbj|BAB50181.1| mll3244 [Mesorhizobium loti MAFF303099]
          Length = 967

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            R +  A+++S+    L    + +  L E       I   D      F     +P PE  
Sbjct: 813 NRARAAAEQLSADGVVLDVSQLQELNLAELNDLREAIQATD----IFFYSGKVVPGPEQT 868

Query: 250 VVLQKIGEVLAH---------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
            VL ++ + +            T    + GH+DA+           +S  RA +   +L 
Sbjct: 869 PVLDRLADQIKEFAENARKSGVTARFMLTGHSDATGRETANAS---ISAARAETVRALLN 925

Query: 301 KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           K GV+ + +  + G       +  +    +S NRR+ I V
Sbjct: 926 KRGVAPE-LLLVRGAGTFEPLVPENSQTGSSTNRRVSITV 964


>gi|291336865|gb|ADD96397.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C206]
          Length = 189

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82
               P    +W   +AD  T+LMAFF+++      +    K I               + 
Sbjct: 16  PKCPPAGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLR-----EAFGVQK 70

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +      P+ ++   ++ S            +  +  Q  + +           S+  + 
Sbjct: 71  VVPVVEQPKGTTVISLEFSPSPTPAITDTLRQQTTELQAPELELQTKTEDSPDGSETDKQ 130

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENY---FLPPLSKEKILAMKRKKRLQDLAKK 198
            K+    +  +G D   +T+L K + K  +     +  L +  ++   RKKRL  ++ +
Sbjct: 131 NKSDFAGEGGEGADQLDATELAKQLKKAIDTGEVTVEMLGENVVINFLRKKRLMKISAQ 189


>gi|50083922|ref|YP_045432.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter sp. ADP1]
 gi|49529898|emb|CAG67610.1| putative Outer membrane protein precursor (OmpA-like)
           [Acinetobacter sp. ADP1]
          Length = 355

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L         I GHTD +      + N RLSL RA
Sbjct: 233 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIDGHTDNT---GPRKLNERLSLARA 289

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
            S    L+ +  +   R+    GFA  +    +      + NRR+
Sbjct: 290 NSVKSALVNEYNIDPARL-ATQGFAWDQPIADNSTKEGRAMNRRV 333


>gi|260890076|ref|ZP_05901339.1| hypothetical protein GCWU000323_01238 [Leptotrichia hofstadii
           F0254]
 gi|260860099|gb|EEX74599.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 155

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
                 FD   S+  P+   +L+ + + +  +   + I GHTD+   +     N  L + 
Sbjct: 46  DSGRLNFDFDKSVVKPQYFELLRNVKDYVEQNNLNLRIIGHTDS---KGTDAYNMALGMR 102

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
           RA +    L++ G+   RI  +           +D       NRRI
Sbjct: 103 RANAVKAKLLEFGLDPARIIGVESMGESDPIAPNDTEQGRFENRRI 148


>gi|153952340|ref|YP_001398779.1| fibronectin-binding protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939786|gb|ABS44527.1| fibronectin-binding protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 319

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +         +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 216 FDFDKTTINLTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
              L K GV + RI  + G+     + +++     + NRR+D
Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNNTKEGRADNRRVD 313


>gi|146281586|ref|YP_001171739.1| outer membrane protein [Pseudomonas stutzeri A1501]
 gi|145569791|gb|ABP78897.1| probable outer membrane protein [Pseudomonas stutzeri A1501]
          Length = 343

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  S           L  I + L        I + GH+D S  R +   N  LS  RA +
Sbjct: 224 FPSSDVALDALGRAKLDIILQYLRADPSVNRIQLDGHSDNSGNRLV---NRDLSRRRALA 280

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             + L+ +GV E +I+ +         +A+  +   + NRR+ 
Sbjct: 281 VQEYLIANGVPEQQIT-VRFHGERYPLVANSSEANRAKNRRVT 322


>gi|83647690|ref|YP_436125.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83635733|gb|ABC31700.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 274

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 16/258 (6%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
           N   R S     +++    +  ++  +   +          N     +N   S    + L
Sbjct: 9   NKFTRISATLFSVAMIAACSSQNLTPEASPSEDFAVKSAAHNVEVADNNRDVSTSEADEL 68

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI--SSTLSG 205
                   D        K+         P  S    +         D+   +   +T + 
Sbjct: 69  YSYGLSQADDNPEITTSKAAETINAAGTPTDSTTTEVTSASTTEGNDMTVLVLDDATAAA 128

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
           L  +                +          +    S    E +  L++  + L+     
Sbjct: 129 LEKEYGGANQFAGVEPPQPRV--------IFYPLEKSNLNQEDMAALKQHADFLSVHPNY 180

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            I I GHTDA      A  N RLS +RA      L+ +G   +++  + G+      + S
Sbjct: 181 QIQIHGHTDA---SGQATYNERLSEERALRVADYLLNNGARPEQVE-VFGWGSREPLLTS 236

Query: 325 DPMNSANRRIDILVEDRQ 342
              +  NRR++++  + Q
Sbjct: 237 -SHHEKNRRVELIYLNDQ 253


>gi|326801229|ref|YP_004319048.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326551993|gb|ADZ80378.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 177

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
              +F+  S +    +  VL +I   +        +I GH         A  N  LS+DR
Sbjct: 71  KNILFEFDSGVLKTASYSVLDQIVREMKKDPSVKFTINGHAS---LEGSAEHNMALSVDR 127

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +    L+ +G+S D ++   GF   +    ++     S NRR++I +
Sbjct: 128 ANAVKLYLVNAGISPDNLTA-QGFGATKPVATNETEEGRSQNRRVEIKL 175


>gi|302037323|ref|YP_003797645.1| hypothetical protein NIDE1997 [Candidatus Nitrospira defluvii]
 gi|300605387|emb|CBK41720.1| conserved exported protein of unknown function, putative Outer
           membrane protein OmpA [Candidatus Nitrospira defluvii]
          Length = 325

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P++   LQ++  +L       + + GHTD         +N  LS  RA++ 
Sbjct: 223 FDTNKAELRPDSEPTLQEMATLLKGRPQLKLLVVGHTDNI---GSYEENGILSQRRAHAV 279

Query: 296 YQVLM-KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
              L  K G+++ R++ +   F+       ++   + NRR++++
Sbjct: 280 INALASKHGIAKARLTPVGDSFSAPIASNKTEEGRAKNRRVELV 323


>gi|332886461|gb|EGK06705.1| hypothetical protein HMPREF9456_00579 [Dysgonomonas mossii DSM
           22836]
          Length = 224

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
             + G   E+   G  I +    +  +F  +SS     +   L      L ++ +  + I
Sbjct: 84  EQINGAQVESINDGQAIKVT-FESGILFATNSSTLSSASQSALSNFAASLNNNPDTDVQI 142

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326
            GHTD +    I      LS  RA + Y  L   GVS  R+    GF   +    +    
Sbjct: 143 YGHTDNTGSDAINNP---LSEKRAQAVYNFLQTKGVSGSRMVS-QGFGSTQPVADNSSVA 198

Query: 327 MNSANRRIDILVEDRQ 342
             + NRR+++ +   +
Sbjct: 199 GRAQNRRVEVYILPNE 214


>gi|113868486|ref|YP_726975.1| outer membrane protein and related peptidoglycan-associated
           proteins [Ralstonia eutropha H16]
 gi|113527262|emb|CAJ93607.1| outer membrane protein and related peptidoglycan-associated
           proteins [Ralstonia eutropha H16]
          Length = 177

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++K   F  T  G  + + D     +F  +  +   E    +Q++G  L  +  E + + 
Sbjct: 51  VLKQEGFALTDEGWELGLSD---KLLFGFNEDLIDAERAANVQRLGRALKGAGIERLRVD 107

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           GHTD       A  N  LS+ RA +  ++L  +G + + I  + G    R    +     
Sbjct: 108 GHTDD---AGSAEYNQSLSVRRAEAVARLLAGAGFAPENIE-VRGRGKSRPVADNRTAAG 163

Query: 328 NSANRRIDILV 338
            S NRR+ I+V
Sbjct: 164 RSENRRVAIVV 174


>gi|170721680|ref|YP_001749368.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169759683|gb|ACA72999.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 831

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              ++ +  +         +  +I+    + R  D+ + + +      + N +  +L ++
Sbjct: 642 GKRMDAAGGESPANQDYLYASRQIVFYSDQIREPDVPRILDNAFLMSSSRNYINSLLTQS 701

Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274
            R+   I  I   +  +F  + +       E    L  I   L ++     I I GH D 
Sbjct: 702 LRS---IETITLESDTLFAFARADFQSLKSEGQNQLSAIASKLLNTPNIGKIIISGHADQ 758

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330
                 A+ N ++S  RA +    L+  GV  + +    G    +  +  D         
Sbjct: 759 L---GDAQGNLQVSRQRAQTIRTYLVGKGVPAE-LVSAQGEGSRKPLVNCDMQQPRAQLI 814

Query: 331 -----NRRIDILV 338
                NRR++I V
Sbjct: 815 KCLEPNRRVEIEV 827


>gi|300866278|ref|ZP_07110987.1| putative Outer membrane protein F [Oscillatoria sp. PCC 6506]
 gi|300335726|emb|CBN56147.1| putative Outer membrane protein F [Oscillatoria sp. PCC 6506]
          Length = 314

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++   +  +F+  SS   P T V+L   I ++  +    + I GHTD        +DN  
Sbjct: 201 MVTLPSDVLFEVGSSALRPGTNVILDNLIADLQNYEGATVRIAGHTDD---AGEVKDNQN 257

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
           LS  RA +  Q L K+ + E       G+   R   +  ++     NRRI++ +
Sbjct: 258 LSFARAQAVEQYLSKT-LGEKYHWVAIGYGESRPSVENTTEANRQRNRRIEVAI 310


>gi|149372847|ref|ZP_01891868.1| OmpA family protein [unidentified eubacterium SCB49]
 gi|149354544|gb|EDM43109.1| OmpA family protein [unidentified eubacterium SCB49]
          Length = 235

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   A++I S + G            E    GI+I+  D+ +   FD +       + 
Sbjct: 81  NKMDKQAQEIESEIPGA---------EVERVDDGIVIT-FDENSGVYFDTAKYNINTASQ 130

Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSED 307
             L K+  VL       + + GHTD+         N  LS  RA +         G+S  
Sbjct: 131 QNLDKLAGVLQEYVDTNVLVVGHTDSV---GSEDSNMLLSQRRAQAVTNYFTSTKGLSSS 187

Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           R +  + +         A+    + NRR++I++   +
Sbjct: 188 RFT-TNWYGEQTPVGDNATPEGRAQNRRVNIVIVPNE 223


>gi|118593012|ref|ZP_01550399.1| hypothetical protein SIAM614_29626 [Stappia aggregata IAM 12614]
 gi|118434319|gb|EAV40973.1| hypothetical protein SIAM614_29626 [Stappia aggregata IAM 12614]
          Length = 192

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S+   P +   +  I + L H+         I GHTDA   +     N  LS+ RA
Sbjct: 87  FHFDSATIAPASYETVGLIADAL-HTPYLQGQTFFIVGHTDA---KGTREYNLELSIKRA 142

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            +    L+ +  V  + +  + G    +L+  S+P  + NRR+ ++
Sbjct: 143 EAVRDALVTTFQVPAEYLFAV-GLGEEQLRDPSNPDAAVNRRVQLI 187


>gi|121602322|ref|YP_988503.1| peptidoglycan-associated lipoprotein [Bartonella bacilliformis
           KC583]
 gi|120614499|gb|ABM45100.1| peptidoglycan-associated lipoprotein [Bartonella bacilliformis
           KC583]
          Length = 174

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS+   +   +L +  E L       I I GH D    R     N  L   R
Sbjct: 64  DRVFFSLDSSVIEADAQRILVRQAEWLLLYPHHTIMIEGHADD---RGTREYNLALGQRR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L+  GVS  R+  +S +   R     D ++  + NRR+ I +   +G
Sbjct: 121 AIAVRDYLVSLGVSPQRMKTMS-YGKERPVAVCDDISCWNQNRRVVISITSGRG 173


>gi|288940691|ref|YP_003442931.1| peptidoglycan-associated lipoprotein [Allochromatium vinosum DSM
           180]
 gi|288896063|gb|ADC61899.1| peptidoglycan-associated lipoprotein [Allochromatium vinosum DSM
           180]
          Length = 177

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  ++   P+ + V++     L       +++ GHTD    R     N  LS  RA S 
Sbjct: 77  FDYDTAEIKPQYLDVIRTHARYLGSQPGTRVTLEGHTDE---RGTREYNLALSDQRADSV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + ++  GV  ++++ I  +   R         S   NRR+ I
Sbjct: 134 RRFMLAEGVPANQMT-ILSYGEERPADPGHSEQSWRLNRRVII 175


>gi|160939630|ref|ZP_02086978.1| hypothetical protein CLOBOL_04522 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437421|gb|EDP15185.1| hypothetical protein CLOBOL_04522 [Clostridium bolteae ATCC
           BAA-613]
          Length = 281

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 80/216 (37%), Gaps = 19/216 (8%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +  ++++ Q +    + T   +   DL      E +   E+     PL + +       
Sbjct: 41  KLEEVASAMQRQLGIEAKTEIEDVPSDLKYPVVGEGAQAPEDAEA--PLQQTQQQYQASA 98

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + + D+A+ I +       D      +   +   + I     +N  +F   ++     + 
Sbjct: 99  REMADMARDIQTYFDSENLDA-----VVTNSENAVYIRF---KNDLLFAPDNANLTDASK 150

Query: 250 VVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
            +L  +G +L    + I    I GHT A    ++  D   LS +RA +    L +  G+ 
Sbjct: 151 SMLDAVGIMLKEKQDNILAIYINGHT-AQAANSLINDRL-LSSERADNVAIYLEEQVGIP 208

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
             ++    G+  +     +        NRR+D+++ 
Sbjct: 209 PKKLI-CRGYGKYYPIADNTTREGREQNRRVDMIIL 243



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 7/214 (3%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81
                      W   YAD +T+++ FF++++ I+  +    + +        +  + A  
Sbjct: 2   KRQKDEEGGQEWLNTYADMITLVLTFFVLLYSISNVNLTKLEEVASAMQ--RQLGIEAKT 59

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
            I D  +  +     +   + ++         +    + ++      +   Y  +     
Sbjct: 60  EIEDVPSDLKYPVVGEGAQAPEDAEAPLQQTQQQYQASAREMADMARDIQTYFDSENLDA 119

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
              NS      + K+         ++       L  +       M ++K+   LA  I+ 
Sbjct: 120 VVTNSENAVYIRFKNDLLFAPDNANLTDASKSMLDAVGI-----MLKEKQDNILAIYING 174

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
             +      I   +L       + I + +Q   P
Sbjct: 175 HTAQAANSLINDRLLSSERADNVAIYLEEQVGIP 208


>gi|170739168|ref|YP_001767823.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193442|gb|ACA15389.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 213

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   P+ + V++ +G  L+    S  VI I GHTDA+        N  LS  RA 
Sbjct: 102 FAYNSAQIGPKALPVVKVLGATLSRPQMSGSVILIVGHTDAN---GSDHGNQVLSERRAE 158

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  Q ++ + GV    +  + G+    LK A+ P    NRR+ 
Sbjct: 159 AVKQYIVHNYGVPAANLVAV-GYGKRHLKDAARPTAPENRRVT 200


>gi|91217237|ref|ZP_01254198.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
 gi|91184580|gb|EAS70962.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
          Length = 616

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           ++ E T T   I I+  +    FD       PE    L K+ E+L  +    I +  HTD
Sbjct: 491 LVPEMTSTEAKILIL--QERIFFDYDKVNIKPEAAFELDKLIEILKENENINIQVVSHTD 548

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMN 328
               R     N +LS DRA S    L+++GV  +R+S   G     L        S+  +
Sbjct: 549 E---RGSGAYNMKLSQDRAGSTVAYLIENGVDPERLSS-EGKGKSELIKDCISGCSEEEH 604

Query: 329 SANRRIDILVED 340
             NRR +  + D
Sbjct: 605 EENRRSEFKIVD 616


>gi|294673757|ref|YP_003574373.1| OmpA family protein [Prevotella ruminicola 23]
 gi|294474249|gb|ADE83638.1| OmpA family protein [Prevotella ruminicola 23]
          Length = 226

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V   T   G+    +   +  +F  + +     +   LQ+   VL +++   ++I GHT
Sbjct: 86  QVETITDANGLEAVKVTFDSGILFATNKADLNASSKSSLQQFATVLKNNSACDVAIYGHT 145

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D +    I      LS++RA S    L   GV   +I  + G         +        
Sbjct: 146 DNTGSDAINNP---LSVNRAKSVSNYLKSLGVPASQIKSVDGQGSTNPVADNSTAEGRKQ 202

Query: 331 NRRIDI 336
           NRR+++
Sbjct: 203 NRRVEV 208


>gi|153836901|ref|ZP_01989568.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|260362576|ref|ZP_05775496.1| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|260878366|ref|ZP_05890721.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260896123|ref|ZP_05904619.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260901510|ref|ZP_05909905.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|149749859|gb|EDM60604.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|308088130|gb|EFO37825.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308090275|gb|EFO39970.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308107674|gb|EFO45214.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308115286|gb|EFO52826.1| outer membrane protein [Vibrio parahaemolyticus K5030]
          Length = 205

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S++        + ++   L       I I+G+  AS        N  LS  RA +
Sbjct: 83  LFDNDSALINQMFKNKIDELAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
              +L++ G+  DR+  I  F   +L         ++ NRR+   V  +QG
Sbjct: 140 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 189


>gi|117921584|ref|YP_870776.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117613916|gb|ABK49370.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 373

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            +   +  F   S++   E    ++++   +  + E  + I GH            N  L
Sbjct: 254 QEDVGSIQFANDSAVVKKEYYKDIERLANYMNKNPEFTVEIAGHASNV---GKPEYNMVL 310

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           S  RA +  ++L++  G+S+ R++  +G+   +  +A D    ++ANRRI+ +V   +
Sbjct: 311 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDSKEAHAANRRIEAIVTTTE 367


>gi|32265934|ref|NP_859966.1| hypothetical protein HH0435 [Helicobacter hepaticus ATCC 51449]
 gi|4809140|gb|AAD30109.1|AF134212_1 membrane-associated protein map18 [Helicobacter hepaticus]
 gi|32261983|gb|AAP77032.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 153

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +FD        +    ++K    L  +   + + GHTD+  + + A  N+ L   RA 
Sbjct: 49  KVLFDFDKYDIRSDMEDRVEKSAAALKSTGAKVVLEGHTDS--YGSDAY-NYALGTKRAN 105

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           +    L   GV+  +I  +S +   +    SD    N  NRR++
Sbjct: 106 AVKNALTTRGVNASQIKTVS-YGESKPTCTSDTPECNQENRRVE 148


>gi|114048845|ref|YP_739395.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113890287|gb|ABI44338.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 230

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I I++  N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 106 VSVTRDGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N RLS  RA      LM  GV+  R+    G          A+    + NRR
Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220

Query: 334 IDILVED 340
           ++I++  
Sbjct: 221 VEIVLTP 227


>gi|332520508|ref|ZP_08396970.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043861|gb|EGI80056.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 743

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 238 DKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D  S+   P     + +I   VLA     + I  HTD+   R     N  LS  RA +  
Sbjct: 636 DLGSATLTPAARAEIDRILLPVLAD-GVSVEIASHTDS---RGSKASNRSLSERRAQAVT 691

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333
             L+  G++  RI   +GF   RL          ++  +  NRR
Sbjct: 692 NYLISKGINSSRIVS-NGFGESRLLNNCSDGVSCTERDHRINRR 734


>gi|163786938|ref|ZP_02181386.1| hypothetical protein FBALC1_17172 [Flavobacteriales bacterium
           ALC-1]
 gi|159878798|gb|EDP72854.1| hypothetical protein FBALC1_17172 [Flavobacteriales bacterium
           ALC-1]
          Length = 278

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 19/142 (13%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             V ++  + +L    + G  I +    +  +F    S    E+  VL KI  +LA  T 
Sbjct: 139 KEVKEDNTETLLKGELKEGDKILL----DNLLFRTGYSYLTKESKPVLDKIAVILAERTN 194

Query: 265 V-ISIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
           V  +I GH        DA   +   R+   LS+ RA   Y  L+K GV   R+  + G  
Sbjct: 195 VYFTIEGHVCCTQGERDAIDRKTKKRN---LSVARAKYIYDYLVKKGVRPYRMKFV-GMR 250

Query: 317 HHRLKIASDPMNSANRRIDILV 338
                      +   RR++ILV
Sbjct: 251 RKEPLGGEPEFD---RRVEILV 269



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P  E   +L  + +V     E ISI G  D    R     N  LS  RA +   V   + 
Sbjct: 35  PETEHSRLLLFLSKVEEMDIEKISIYGFCDD---RGSDNYNLVLSQQRADAIKTVFSNNE 91

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA----NRRIDILVED 340
             E  I+ + G     L I  +   S     NR+++I+V+ 
Sbjct: 92  FDESVITNVDGKGEILLNIVHEENLSKIRGLNRKVEIIVKP 132


>gi|28900810|ref|NP_800465.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809256|dbj|BAC62298.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 215

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S++        + ++   L       I I+G+  AS        N  LS  RA +
Sbjct: 93  LFDNDSALINQMFKNKIDELAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 149

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
              +L++ G+  DR+  I  F   +L         ++ NRR+   V  +QG
Sbjct: 150 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 199


>gi|207725016|ref|YP_002255413.1| chemotaxis (motility protein b) transmembrane (partial sequence)
          [Ralstonia solanacearum MolK2]
 gi|206590245|emb|CAQ37206.1| probable chemotaxis (motility protein b) transmembrane (partial
          sequence) [Ralstonia solanacearum MolK2]
          Length = 81

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%)

Query: 8  NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          ++ +    I+ ++       ++ G+WKI YADF+T +MAFFL+MW++++           
Sbjct: 2  SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELVVGRN 61

Query: 68 YFNPFGKNLMTASKGI 83
           F    ++      G+
Sbjct: 62 VFPHAAESGAVRRGGV 77


>gi|113969010|ref|YP_732803.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113883694|gb|ABI37746.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 230

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I I++  N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 106 VSVTRDGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N RLS  RA      LM  GV+  R+    G          A+    + NRR
Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220

Query: 334 IDILVED 340
           ++I++  
Sbjct: 221 VEIVLTP 227


>gi|319954930|ref|YP_004166197.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319423590|gb|ADV50699.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 366

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +  S+    E   ++  ++  VLA +    + +  HTD+      +  N  LS  RA + 
Sbjct: 258 NSGSATLTSEAKSIIDNRLMPVLAQNPGVKVELASHTDSQ---GASSSNQDLSERRAKAV 314

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333
              L+  GV+   +   +G+   +L          +   ++ANRR
Sbjct: 315 ADYLISKGVNSS-LLVANGYGETKLLNRCKDGVSCTAREHAANRR 358


>gi|163802616|ref|ZP_02196508.1| flagellar basal body P-ring biosynthesis protein A [Vibrio sp.
           AND4]
 gi|159173699|gb|EDP58518.1| flagellar basal body P-ring biosynthesis protein A [Vibrio sp.
           AND4]
          Length = 315

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
                T  F  +S+   PE+   L  +   L    +  + + G+TD       A  N ++
Sbjct: 198 TQTMGTGSFALNSTTLKPESASKLDDLVAFLNEYPQATVGVIGYTDT---SGPAAYNQKV 254

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           S  RA S    L++ G+   RI +  G   +    +++       NRR++++V
Sbjct: 255 SEKRAESVANALVEKGIDASRI-QARGEGENNPIASNETREGREQNRRVEVVV 306


>gi|89052772|ref|YP_508223.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88862321|gb|ABD53198.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 315

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 214 GVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           GV    + T ++  +    + P+    F+  +S    E    L  +   LA      I +
Sbjct: 183 GVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSIVL 242

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI-SKISGFAHHRLKIASDP 326
            GHTDA         N  LS  RA +  Q L    GV   ++  +  GF   R    +  
Sbjct: 243 VGHTDAL---GSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPE 299

Query: 327 MNSANRRIDILVED 340
              ANRR+++++  
Sbjct: 300 GREANRRVEVVLTT 313


>gi|163788754|ref|ZP_02183199.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
 gi|159875991|gb|EDP70050.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
          Length = 636

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 225 LISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRN 279
           LI +ID      N   FD   S    +    L+ I +V   H + +I I  HTD+   R 
Sbjct: 509 LIPLIDFSQIVINPIFFDFDKSKIRTDAQYELENIVDVMRRHKSMIIKIESHTDS---RG 565

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANR 332
             + N +LS  RA S    L+  GV  +RI    G+   +L          ++  +  NR
Sbjct: 566 RDKYNLKLSDRRAKSTRDYLISRGVEANRIESAIGYGETQLLNNCGNRVKCTEEEHQVNR 625

Query: 333 R 333
           R
Sbjct: 626 R 626


>gi|114776885|ref|ZP_01451928.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
 gi|114552971|gb|EAU55402.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1]
          Length = 200

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 22/196 (11%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
             S     +    +        +        +  L+ + + I+   +   A    + V  
Sbjct: 13  GPSEPESTAAPAGDQQLASENEQLGAEVAALRAELKQVNQDIADKKAQATASPKPERVAT 72

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDAS 275
              R  + +S         F         E+   L ++ +          I +RG+TD  
Sbjct: 73  PVDRLWVTVS---------FRSGYMELTRESRKALSRLAKKFLSKPREQSIEVRGYTDDE 123

Query: 276 PFRN----------IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324
           P               + N  LS  RA +  Q L+ + +  D +  +  G +++    A+
Sbjct: 124 PIGGYPGHRHKPHHPYKTNMALSHARATNVAQALIDACIPNDSVRALGFGASNYVADNAT 183

Query: 325 DPMNSANRRIDILVED 340
                 NRR +I +  
Sbjct: 184 AEGRQRNRRAEIHLVR 199


>gi|170695384|ref|ZP_02886530.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170139784|gb|EDT07966.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 248

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L   +      +   +++ G+TD +        N  LS  RA + 
Sbjct: 145 FATDSATLSPIAKENLDHFMAANKGANLRRVTVTGYTDKT---GSEAHNLALSKARAEAV 201

Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338
            Q L   G+  ++ +++  G A      A+    S NRR+D+ V
Sbjct: 202 VQYLRDGGLEGEQFVAQGLGSADPVASNATAEGRSQNRRVDVRV 245


>gi|330989073|gb|EGH87176.1| OmpA/MotB [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 831

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    +  ++ +    +               ++++L   +   L+ 
Sbjct: 626 KARIPDYWYPAIYKQAPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827


>gi|330954871|gb|EGH55131.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 831

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    + +++ +    +               ++++L   +   L+ 
Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827


>gi|228474110|ref|ZP_04058851.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228274624|gb|EEK13465.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 668

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 38/274 (13%)

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S G      P  +   +      +  +  +   +  G       ++ L + +  LS+SQQ
Sbjct: 419 SMGFLSSNRPGGKGKDDIYSFIQNRPLEFDCYKVIKGVVKDADTHETLSDVLLTLSDSQQ 478

Query: 140 SE-----HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            E     +  N      +   D   +    ++  ++       ++  +   + ++  L+ 
Sbjct: 479 KEITRKTNEANGTFDFGKNPVDCDDTFVFVRAQKEDYAVAEEQINIRQNGEIHQEIFLKS 538

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + KK++      V D++ K    E                  FD   S   P+  V L K
Sbjct: 539 IKKKVT------VGDDLAKFFNIEII---------------YFDFDKSNIRPDAAVDLAK 577

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           I EV+       I+I+ HTD+   R     N  LS  RA S  + +++ G+   R++   
Sbjct: 578 IVEVMKEHPTIKIAIKSHTDS---RGSDAYNLALSDRRAKSTLEWMVQQGIDRSRLTA-K 633

Query: 314 GFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G+   +L          S+  +  NRR + ++ +
Sbjct: 634 GYGETQLVNGCSNGVPCSEEEHQKNRRSEFIITE 667


>gi|90413724|ref|ZP_01221712.1| Putative OmpA family protein [Photobacterium profundum 3TCK]
 gi|90325193|gb|EAS41690.1| Putative OmpA family protein [Photobacterium profundum 3TCK]
          Length = 241

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++      TR G  I +    N   F    S      +  L+ +  V    
Sbjct: 104 VQETKLRQQLESTGISVTRDGDNIVLN-MPNEITFGIDQSDLSSRAVAALKNVALVAKEY 162

Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  I++ G TD++     A  N RLS  RA      LM+ GV+ +R+    G    +  
Sbjct: 163 DKTLINVYGFTDST---GSASYNQRLSQVRASEVSSNLMRGGVAANRVI-TKGMGEAKPI 218

Query: 322 IAS--DPMNSANRRIDILV 338
            ++  +   + NRR++I++
Sbjct: 219 ASNKTEQGRAENRRVEIVL 237


>gi|148652125|ref|YP_001279218.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571209|gb|ABQ93268.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1]
          Length = 537

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           +G D+      +  ++K          +  ++A        ++ + I+   + +  DN+ 
Sbjct: 322 EGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDFDAEVKQSIADATTAM--DNLG 379

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           +    +     + + +I+      F    +    E   VL +  EV+    +  + I GH
Sbjct: 380 ENPDPKDVARALSLQVIN------FAVDKTDIPAENQAVLDRAVEVMKQVPDMQLLILGH 433

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD+         N  LS  RA +    L+  G    ++    G         ++  N   
Sbjct: 434 TDSD---GDDAYNKDLSQRRAEAVKAYLVSKGADAAKLM-TKGMGETDPIATNETENGKF 489

Query: 330 ANRRIDILV 338
            NRRI+  V
Sbjct: 490 RNRRIEFTV 498


>gi|73539729|ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134]
 gi|72117142|gb|AAZ59405.1| OmpA [Ralstonia eutropha JMP134]
          Length = 591

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 30/141 (21%)

Query: 223 GILISIIDQRN--TPMFDKSSSIPLPETIVVLQKIGE----------------------V 258
           G+ +S+ D        F   SS+  PE  V   +I +                      V
Sbjct: 153 GLSVSVRDSGAGANGQFASGSSVLTPEARVAFTEIAQQYAYPVQSRQLGPQSTPQDRQAV 212

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               +  I + GHTD +     +R N  LS  RA +   +   +GV+E ++    G    
Sbjct: 213 EGLKSRRILLIGHTDDT---GSSRLNADLSEQRARAVAALFRDAGVAESQLY-YQGAGET 268

Query: 319 RLK--IASDPMNSANRRIDIL 337
                   +   + NRR++I+
Sbjct: 269 MPLADNRDEAGRAKNRRVEIV 289


>gi|323494548|ref|ZP_08099653.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546]
 gi|323311275|gb|EGA64434.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546]
          Length = 204

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           L  +V ++     + E     + I         +F   S    P     +Q + E LA  
Sbjct: 60  LGAMVDNDGCGAAIVEEEERQLRI---------LFANDSYEINPIFSDQIQTMAEFLARY 110

Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  I I+G+  AS   +    N  LS  RA++    L+   V   R++ I G+   RL+
Sbjct: 111 KSASIQIQGY--ASKVGDPDY-NLELSKKRAHAVEDELLSFEVDPKRVT-IVGYGETRLE 166

Query: 322 I--ASDPMNSANRRID 335
                +  ++ NRR+ 
Sbjct: 167 AEGDDETSHALNRRVT 182


>gi|293392950|ref|ZP_06637267.1| OmpA family protein [Serratia odorifera DSM 4582]
 gi|291424484|gb|EFE97696.1| OmpA family protein [Serratia odorifera DSM 4582]
          Length = 165

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  +     P +   +QK+G  L         + GHTD          N RLSL R
Sbjct: 59  DKVLFGNNIGKLNPASTETVQKMGRALLSVDIVKFRLDGHTDNY---GEDSYNDRLSLRR 115

Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           A +   +L   G+    I ++  G         +    + NRR+ I+V  
Sbjct: 116 ANAVADLLASVGIPRANIETRGRGKRDPVADNRTASGRAENRRVSIIVTP 165


>gi|114778984|ref|ZP_01453771.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Mariprofundus ferrooxydans PV-1]
 gi|114550783|gb|EAU53353.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Mariprofundus ferrooxydans PV-1]
          Length = 466

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 95/274 (34%), Gaps = 14/274 (5%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
              N     +   + +N  E +  ++    + + + K   +++    ++    + +   +
Sbjct: 185 VSSNPAARGQLYNESRNSIESARTSQQIAGLGKQLKKKPANVEAWVNSRNSDMETIALAL 244

Query: 132 FYLSNSQQSEHCKNSLTRDS---EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
               ++  S   +  L  ++    +     +  D  + I+  +            L   R
Sbjct: 245 KLNLDNTASPGERVKLITEAIGQMRSNYDLQLADARQQIDTLQGNLSELDDTRSSLGQAR 304

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
            K    + ++  + ++ L        V    T    +I    +  +  F   S+I   E+
Sbjct: 305 YKL--QIKREAEAKIAQLAKLFDPSQVELFLTTDADVII---RMKSIHFPSGSAIIPSES 359

Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L+   + +    +  + + GHTD+         N  LS  RA +  + L     +  
Sbjct: 360 YDLLELASKAIDLFGDRAVRVEGHTDSM---GNDEYNQNLSERRATTVKEYLDARFSNNK 416

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           R     GF  ++    ++     S NRRIDI++ 
Sbjct: 417 RTITSIGFGENKPIANNEKAEGRSKNRRIDIVLL 450


>gi|262275324|ref|ZP_06053134.1| outer membrane protein [Grimontia hollisae CIP 101886]
 gi|262220569|gb|EEY71884.1| outer membrane protein [Grimontia hollisae CIP 101886]
          Length = 197

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+I  P     L K+   L    E  + ++GHT +SP  +    N  LS+ RA + 
Sbjct: 78  FANDSAIVEPAYREALDKMAGFLKLYPETFLELQGHT-SSPGSDDYNQN--LSIQRAKAV 134

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRI 334
              L++ GV  DR++ I  G     L   ++     NRR+
Sbjct: 135 QAHLIEKGVPIDRLTLIGLGEGDLMLADNTETTQFVNRRV 174


>gi|254502312|ref|ZP_05114463.1| OmpA family protein [Labrenzia alexandrii DFL-11]
 gi|222438383|gb|EEE45062.1| OmpA family protein [Labrenzia alexandrii DFL-11]
          Length = 190

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
           II+      FD+ S+    E  + L    + L  + + ++ ++GH D        +    
Sbjct: 69  IINVGRRIYFDRGSATVSDEAKMTLDNQAKWLKQNKSWLVKVQGHADDPGSEAAQKT--- 125

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           LS  RA + Y  L++ GV+  R+  + G+   R     D +   S NRR+
Sbjct: 126 LSTQRATAVYNALIERGVNAKRMW-VKGYGVERPVTDCDAVTCQSQNRRV 174


>gi|153841945|ref|ZP_01993455.1| inner membrane lipoprotein YiaD [Vibrio parahaemolyticus AQ3810]
 gi|149745429|gb|EDM56680.1| inner membrane lipoprotein YiaD [Vibrio parahaemolyticus AQ3810]
          Length = 170

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L+ +  +L    +  + I G+TD++        N  LS  RA S 
Sbjct: 66  FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            Q L+   V+  R     G+          +    + NRR++I +   +
Sbjct: 123 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 170


>gi|332879955|ref|ZP_08447639.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681951|gb|EGJ54864.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 650

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+  V L KI EV+  + +  I IR HTD+   R     N +LS  RA + 
Sbjct: 541 FDLDKSDIRPDAAVELAKIVEVMRENPKMKIDIRSHTDS---RGADSYNLKLSDRRAKAT 597

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            + ++K G+   R++   G+   +L          +D  + ANRR + ++  
Sbjct: 598 LEWIVKQGIERKRLTA-KGYGETQLVNGCSNGVPCTDEEHQANRRSEFIIVS 648


>gi|127512450|ref|YP_001093647.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126637745|gb|ABO23388.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 286

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S     +   + K+ E L++  EV  + I  +TD+   R++   N ++S  RA S  Q
Sbjct: 183 GGSELTRYSKAQIAKVQEYLSYDPEVELVLIDAYTDSFGGRSV---NKKVSEKRANSVKQ 239

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           + + +G+  +RI    G    R   ++D     + NRR+ I
Sbjct: 240 LFLSAGIPNERIH-TYGHGERRHVASNDTIDERARNRRVVI 279


>gi|209695194|ref|YP_002263123.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
 gi|208009146|emb|CAQ79386.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
          Length = 355

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 228 IIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           I    +  +FD +S+    PE +     I  +  +S   +SI GHTDA    + A  N  
Sbjct: 229 ITAYVDDELFDSNSTTITKPELLDPF--IARLHYYSESTLSIIGHTDA--IGSEAY-NQS 283

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           LS  RA S  +  +KSG+S +RI    G         ++  N    NRR+++
Sbjct: 284 LSEKRAESVAKYFIKSGISNNRI-STQGRGEKDPIAPNNTQNGRYLNRRVEL 334


>gi|320531900|ref|ZP_08032811.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135891|gb|EFW27928.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 332

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     +   VL  + E +        ++I GHTD          N  LS  RA +
Sbjct: 50  FATDSDQLSAQADSVLASVVEQIKKYPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 106

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             + L K          +SG      ++ +D       NRR++I +   +
Sbjct: 107 VSERLKKLTDLSTWKESVSGKGESSPRVPNDTDERRQINRRVEITLTPSK 156


>gi|167722111|ref|ZP_02405347.1| hypothetical protein BpseD_24069 [Burkholderia pseudomallei DM98]
          Length = 351

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 3/175 (1%)

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            QR   ++    + Q     +++  RD          + +   +     Y L   S +  
Sbjct: 179 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 238

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
             +    R+   A      L+ L+A  I  G L  +       S +  R   MF   ++ 
Sbjct: 239 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 296

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQ 297
             P    +++KI   +A     +++RG+TD  P ++     N  LS +RA    Q
Sbjct: 297 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQ 351


>gi|54294009|ref|YP_126424.1| hypothetical protein lpl1070 [Legionella pneumophila str. Lens]
 gi|53753841|emb|CAH15307.1| hypothetical protein lpl1070 [Legionella pneumophila str. Lens]
          Length = 234

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 51/216 (23%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
              TD+   I       L  ++     A K+   + +   KI   +   +    V  V  
Sbjct: 13  ASFTDMLVGIIFIFIILLMIVANNFQSATKKVTEINESRDKILKEIEQSLKQEGVS-VTI 71

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------------------ 259
           +  +  + +       + +F         E  + L K+  VL                  
Sbjct: 72  DIEQGVLRL-----PESILFGVDQYQVNEEGKIALSKLASVLEKYLPCMAVTEEKFKSQC 126

Query: 260 -------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS---------- 302
                      + + I GHTD++     +  NW LS  RA S +  L+ +          
Sbjct: 127 ESLNLTSRDGLDAVFIEGHTDST---GSSEHNWYLSARRAISVFNELIDAKPLLNVGLKN 183

Query: 303 --GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
             G+    I  +SG+   R    ++   S NRRI++
Sbjct: 184 INGIP---ILNVSGYEARRPIDPNN--LSVNRRIEL 214


>gi|154493612|ref|ZP_02032932.1| hypothetical protein PARMER_02952 [Parabacteroides merdae ATCC
           43184]
 gi|154086822|gb|EDN85867.1| hypothetical protein PARMER_02952 [Parabacteroides merdae ATCC
           43184]
          Length = 662

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 88/287 (30%), Gaps = 30/287 (10%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D       S+      ++   I  +  D  I   
Sbjct: 345 PYVRDSVTLYFASDGHPGMGG----LDIFKATLDSTGKWNVENMKAPINSSGDDFGITFA 400

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
             K+      N                 +T   E    +    D     +          
Sbjct: 401 GNKESGFFSSNRNDARGYDHLYSFELPVITIFIE---GIVSDVDENPIEDATVRIVGRDG 457

Query: 179 SKEKILAMKRKKRLQDLAKKI----SSTLSGLVADNIVKGVLFETTRTGILISIIDQR-- 232
             EK+LA K  K   +L + I     ++  G +  N       E      ++        
Sbjct: 458 LNEKVLAKKDGKYRVELERDIRYVMMASARGYLNQNFELKTGPEEKNETYIVDFFLSPIS 517

Query: 233 -----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
                    +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N R
Sbjct: 518 KPVVIENIFYDFDKATLRPESKKALDEMIKILNDNPNVTIELGAHTDR---KGSEQYNER 574

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           L+  RA S    L+  G+++DR+    G+     K       + N+R
Sbjct: 575 LAQRRAQSVVDYLIAGGIAQDRLEA-KGYGESVPK-------AINKR 613


>gi|222055877|ref|YP_002538239.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221565166|gb|ACM21138.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 530

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV- 215
             K   ++  +  +    + P  +E  +     +   +  K+I + L+  + ++  +GV 
Sbjct: 325 EPKVQPVQPKVQPKVQPVVQPKVQEPKITKLETEITVEPKKEIPANLNP-IEESSAEGVS 383

Query: 216 -LFETTRTGILISIIDQRNTP----------------MFDKSSSIPLPETIVVLQKIGEV 258
            L+     G  + I   +  P                MF+   +    E    L ++ E 
Sbjct: 384 PLYGIETRGDSLEISTAKAAPIATKMLVYRKFRFADIMFEFGQADLSNEVKKSLSEVAEQ 443

Query: 259 LAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315
                    + I GHTD+    +    N  LS+ RA +    L+ K G+   ++  I G 
Sbjct: 444 ARADKHWTYMRIDGHTDS--IGSTGY-NMDLSVKRAIAIASYLIIKEGIDPSKVF-IKGL 499

Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQG 343
              +L    ++      NRR +IL    +G
Sbjct: 500 GKSKLIGDNSTTEGRRLNRRFEILFLVPKG 529


>gi|26991353|ref|NP_746778.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24986416|gb|AAN70242.1|AE016663_10 OmpA family protein [Pseudomonas putida KT2440]
          Length = 172

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           D     +F         ++  ++++IG+ L     + + + GH D+      A  N +LS
Sbjct: 62  DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 118

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA S  + L+  G+    I    G    +    +        NRR+ I+V
Sbjct: 119 ERRAQSVTKALVGIGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 169


>gi|304393653|ref|ZP_07375581.1| OmpA/MotB [Ahrensia sp. R2A130]
 gi|303294660|gb|EFL89032.1| OmpA/MotB [Ahrensia sp. R2A130]
          Length = 1102

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 17/282 (6%)

Query: 70   NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            +PF   ++   +GI      P       +  +    +     + +  +      + R+  
Sbjct: 820  SPFTWMIVETEQGITLSGFAPSSDVAVDLAAAASSQLKATVENNQRVAGGAPSGFGRVAR 879

Query: 130  NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---------KEENYFLPPLSK 180
             +        S     +  R   +GK   ++   E             +  N    P+  
Sbjct: 880  ILIDAVGRVDSASASLTGERVVLEGKAGSETEVSEIGKRVSDALPDGYRLANRLSYPIPA 939

Query: 181  EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDK 239
              I      K ++               ++  +    E +    +    I +    +FD 
Sbjct: 940  PAIAPKAEPKPVEAPVSMKPENPIAAPKEDTPEPASEEVSAACPVDFQQILRGKKILFDN 999

Query: 240  SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            + +     +  +L  + +  +  S   + I GHTDA         N  LS  RA +    
Sbjct: 1000 NRAFIKASSYPLLDSLVDGFSKCSDARVMISGHTDAV---GRDAYNLSLSQSRAQAVLDY 1056

Query: 299  LMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
            +   G+  D     +GF   +     A+D   +ANRRI I V
Sbjct: 1057 IAGKGIDVDAFEA-AGFGETKPIADNATDTGRAANRRIVIEV 1097


>gi|126664143|ref|ZP_01735136.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
 gi|126623857|gb|EAZ94552.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
          Length = 621

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 99/279 (35%), Gaps = 17/279 (6%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F       M  +KG  +  N  E  + +K D +   + TK               ++   
Sbjct: 354 FGGLDVFKMDLNKG-TEAINVGEPVNTSKDDFAFTYNTTKKVGFFSSNRDGNDDIFKADP 412

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                     +     N +   +    D  ++T   +S           L      A   
Sbjct: 413 ICKVQALVRVKDAKTGNVIEGATVMLVDEKQTTITNQSTASNGETLSGVLCNTAYSAQVS 472

Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           K+  +    +++      +V + ++  ++   T   +++          F+   S    +
Sbjct: 473 KQGYESGVFEVAKAENDQVVVEALLNPIMPIITEKEVILQ------PIYFEYDKSNITAD 526

Query: 248 TIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L K+  V+  +  +I     HTD+   R   + N +LS  RA +  Q L+  G+++
Sbjct: 527 GAAELNKLIIVMNENPNMIIFAKSHTDS---RGSDKYNMKLSDRRAKATVQYLLSKGIAK 583

Query: 307 DRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDR 341
           +RIS   GF     K+A    ++  ++ NRR + L+  +
Sbjct: 584 ERISG-QGFGESEPKVACKSCTEEEHAQNRRSEFLIVKK 621


>gi|332995422|gb|AEF05477.1| OmpA/MotB [Alteromonas sp. SN2]
          Length = 393

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD  SS+        + +  E +   T     I GHT A P       N  LS DRA
Sbjct: 279 RVLFDNESSVVKAPRDPEISEFAEFMKQYTNTTAVIEGHTSA-PGSEAY--NMDLSEDRA 335

Query: 293 YSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
            S  +V++    +   R+  + G+   RL     +   +  NRRI + V+D
Sbjct: 336 ASFKEVMVDMYDIDASRLETV-GYGETRLLDTAKNAEAHRVNRRISVTVKD 385


>gi|313828793|gb|EFS66507.1| OmpA family protein [Propionibacterium acnes HL063PA2]
          Length = 115

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWR 286
           ID   + +FD  S +  P    ++ +  + L     +  I + G+TD+      A  N  
Sbjct: 3   IDLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLD 59

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDILVED 340
           LS  RA S  +VL         I+ ++ G        ++D       NRR+ I V++
Sbjct: 60  LSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRRVTITVKE 114


>gi|262369124|ref|ZP_06062453.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316802|gb|EEY97840.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 216

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 14/149 (9%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +  KK+   ++G        GV       G +  I+       FD + S   P     
Sbjct: 76  LDNKEKKLRQQMAGT-------GVEVNRNPDGSVGLIM--PGNITFDTNKSNIKPNFYST 126

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI- 309
           L K+ + L   +   I + G+TD++        N  LS  RA S    L   GVS  RI 
Sbjct: 127 LNKVAQTLTEDNKSGILVTGYTDST---GNDSINIPLSQARAQSVASYLASQGVSTTRIN 183

Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338
           ++  G A+     A+      NRR++I +
Sbjct: 184 AQGQGSANPIASNATAEGREQNRRVEISI 212


>gi|260494689|ref|ZP_05814819.1| peptidoglycan-associated lipoprotein [Fusobacterium sp. 3_1_33]
 gi|260197851|gb|EEW95368.1| peptidoglycan-associated lipoprotein [Fusobacterium sp. 3_1_33]
          Length = 166

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S+  P+   +L  + + +  +   ++I GHTD   +
Sbjct: 21  EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 75

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                 N  LS  RA +    L++ G+   RI  I            A+    + NRR++
Sbjct: 76  IASNAYNMGLSKRRAEAVKTKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 135

Query: 336 ILVEDR 341
             +  R
Sbjct: 136 FKLVKR 141


>gi|78224724|ref|YP_386471.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78195979|gb|ABB33746.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 193

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDN 284
           ++    +   FD  S +       +L K  E +L       + I GH D    R     N
Sbjct: 80  TVTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNARVLIEGHCDE---RGSDEYN 136

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
             L   RA +A   L+  GV+ +R+S IS +   +           + NRR + L+
Sbjct: 137 LALGEKRAKAARDYLVTLGVAANRLSIIS-YGEEKPLDPGHTEEAWAKNRRAEFLI 191


>gi|289641193|ref|ZP_06473360.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508955|gb|EFD29887.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 18/159 (11%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRT---GILISIIDQRNTPMFDKSSSIPLP 246
           + + +  ++I+   +    D     V   T R    G++++I       +F   S+    
Sbjct: 71  QAIIESIREINPAAAIRPIDVERSVVTLRTERRDGSGVVVTISSD---VLFAFDSANLTK 127

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
                L  I   L   T  I++ G+TD++        N  LS  RA +   +L +     
Sbjct: 128 AAREQLDGIAAQLGRVTGTITVNGYTDST---GTPAYNVILSQQRANAVANLL-RPKAPP 183

Query: 307 DRISKISGFAHHRLKIASD--------PMNSANRRIDIL 337
             +   +G         +              NRR+ I+
Sbjct: 184 GVLVSATGHGAANPVAPNTNSDGSDNSAGRGQNRRVSII 222


>gi|254506333|ref|ZP_05118476.1| outer membrane protein [Vibrio parahaemolyticus 16]
 gi|219550813|gb|EED27795.1| outer membrane protein [Vibrio parahaemolyticus 16]
          Length = 225

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
             C+ +  +++  G+    S      I       +   + +     +++  +        
Sbjct: 18  SGCQATQRQNATTGESETNSATSGAIIGAIAGAAIGVATGDDAKDRRKRALIGAAGGAAV 77

Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253
               G   D     +  E   +G+ +        ++   N   F  SS          L+
Sbjct: 78  GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLLLRLENGIGFSSSSYQLDSSIHNTLR 137

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +  +L    +  + I GHTD++        N  LS  RA S    L+  GV+  R    
Sbjct: 138 GVARILVEYPDTSLVIEGHTDST---GSDTTNQILSERRAESVRSYLVSQGVAAGRAIA- 193

Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
            G          ++    + NRR++I +   +
Sbjct: 194 RGNGERYPLCTNSTAEGRACNRRVEIQILPLK 225


>gi|209964175|ref|YP_002297090.1| OmpA family protein (probable proton motor MotY) [Rhodospirillum
           centenum SW]
 gi|209957641|gb|ACI98277.1| OmpA family protein (probable proton motor MotY) [Rhodospirillum
           centenum SW]
          Length = 356

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T  FD   S    +   VL+ +  +  + +   + + GH D       A  N RLS+ RA
Sbjct: 252 TVFFDWDRSDLTADARQVLRSVAGDARSGNIFAVQVTGHADT---SGPADYNQRLSIRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
            +    L+  G+  D+I  I G       + +       +NRR  I+
Sbjct: 309 EAVRDFLITQGIPADQI-AIEGRGETDPLVPTADGVREPSNRRSVII 354


>gi|298208372|ref|YP_003716551.1| putative outer membrane protein [Croceibacter atlanticus HTCC2559]
 gi|83848293|gb|EAP86163.1| putative outer membrane protein [Croceibacter atlanticus HTCC2559]
          Length = 332

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + +  P         ++   L       +SI GHTD   F     DN  +   RA   
Sbjct: 231 FAQQNFKPDATLKSYALELKSYLQKHPNKRVSIVGHTD---FVGEEEDNLWIGEQRAKLV 287

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L+  G+  ++++  S G +  +    +D   + NRRI+I V
Sbjct: 288 MKYLISIGIDANKMTASSKGESDPKFPNTTDANRAKNRRIEIKV 331


>gi|254787334|ref|YP_003074763.1| peptidoglycan-associated lipoprotein [Teredinibacter turnerae
           T7901]
 gi|237684812|gb|ACR12076.1| peptidoglycan-associated lipoprotein [Teredinibacter turnerae
           T7901]
          Length = 166

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   SI   +    L    EVL  + + + + GH D    R     N  L   RA +  
Sbjct: 67  FDFDQSILRADARSALMVYAEVLKAAPKSVRLEGHADE---RGTREYNMALGERRANAVR 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
             L+  GV    I  +S +   R     +S+   + NRR++I++
Sbjct: 124 DFLILQGVDSSLIETVS-YGEERPAQMGSSESSWAMNRRVEIVL 166


>gi|15641766|ref|NP_231398.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121585850|ref|ZP_01675644.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80]
 gi|121727708|ref|ZP_01680803.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52]
 gi|147673520|ref|YP_001217304.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395]
 gi|153819630|ref|ZP_01972297.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457]
 gi|153821127|ref|ZP_01973794.1| hypothetical protein A5E_2064 [Vibrio cholerae B33]
 gi|227081908|ref|YP_002810459.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2]
 gi|229508134|ref|ZP_04397639.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286]
 gi|229511627|ref|ZP_04401106.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33]
 gi|229518766|ref|ZP_04408209.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9]
 gi|229607695|ref|YP_002878343.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236]
 gi|255744822|ref|ZP_05418772.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101]
 gi|262161895|ref|ZP_06030913.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169763|ref|ZP_06037454.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27]
 gi|298498167|ref|ZP_07007974.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656285|gb|AAF94912.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549988|gb|EAX60006.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80]
 gi|121630005|gb|EAX62413.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52]
 gi|126509834|gb|EAZ72428.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457]
 gi|126521323|gb|EAZ78546.1| hypothetical protein A5E_2064 [Vibrio cholerae B33]
 gi|146315403|gb|ABQ19942.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395]
 gi|227009796|gb|ACP06008.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2]
 gi|227013663|gb|ACP09873.1| chemotaxis protein MotB-related protein [Vibrio cholerae O395]
 gi|229343455|gb|EEO08430.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9]
 gi|229351592|gb|EEO16533.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33]
 gi|229355639|gb|EEO20560.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286]
 gi|229370350|gb|ACQ60773.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236]
 gi|255737293|gb|EET92688.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101]
 gi|262021997|gb|EEY40707.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27]
 gi|262028627|gb|EEY47282.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE
           91/1]
 gi|297542500|gb|EFH78550.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 244

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234
            L ++  ++  D+   I       +A  NI+  V  E  +  +++ I D         +T
Sbjct: 40  ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99

Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283
             F    SSIP   T    ++ IG VL  + +          I I GHTD+       + 
Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKG 159

Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329
           NW LS DRA S + V           G  E+    ++  +SG+A  R   L  A+    S
Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLHEANQQEKS 219

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 220 QNRRIDI 226


>gi|332878199|ref|ZP_08445928.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683937|gb|EGJ56805.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 229

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
            ++   AKKI   + G            +    GI+++  D+ +   F+ +      ++ 
Sbjct: 75  NQMDKQAKKIEEEIPGA---------EVKRVDDGIVVT-FDENSGVYFETAKHNINEKSK 124

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             L K+  VL    E  + + G+TD+         N  LS  RA S       +G++  R
Sbjct: 125 ETLNKLIAVLKEYPETNVVVAGYTDSV---GKDEYNMGLSKRRAQSVTNYFTSNGLAASR 181

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            +    F        +      + NRR+++++   +
Sbjct: 182 FT-TKWFGEQNPVADNGTPEGRAKNRRVNVVIVPNE 216


>gi|303237216|ref|ZP_07323786.1| OmpA family protein [Prevotella disiens FB035-09AN]
 gi|302482603|gb|EFL45628.1| OmpA family protein [Prevotella disiens FB035-09AN]
          Length = 704

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I +    +   +D   +   PE+   L  + ++L  +  V I +  HTD   +   A  N
Sbjct: 529 IRVPVMIDNIFYDFDKATLRPESEAALDNLVKLLNENPNVTIELSAHTD---YLGRAEYN 585

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR------------------------- 319
             L+  RA +    L+K GVS DR+S + G+   +                         
Sbjct: 586 KNLAQRRADAVVAYLIKKGVSADRLSPV-GYGEGKPKTIRKKVAEKYPWLKEGQVLTEEF 644

Query: 320 ----LKIASDPMNSANRRIDILVED 340
                K   +  N  NRR + +V  
Sbjct: 645 IKSLPKDKQEIANQMNRRTEFVVLR 669


>gi|237744908|ref|ZP_04575389.1| outer membrane protein [Fusobacterium sp. 7_1]
 gi|229432137|gb|EEO42349.1| outer membrane protein [Fusobacterium sp. 7_1]
          Length = 166

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E     + I + D+     FD   S+  P+   +L  + + +  +   ++I GHTD   +
Sbjct: 21  EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 75

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
                 N  LS  RA +    L++ G+   RI  I            A+    + NRR++
Sbjct: 76  IASNAYNMGLSKRRAEAVKAKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 135

Query: 336 ILVEDR 341
             +  R
Sbjct: 136 FKLVKR 141


>gi|319792464|ref|YP_004154104.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315594927|gb|ADU35993.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 216

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+  PE    L  + E +      + I  GHTD+      A  N RLS+ RA +    L
Sbjct: 114 KSVLKPEGRAKLTDLVEKIRGVNLEVIIAVGHTDS--IGTDAY-NQRLSVRRAEAVKAFL 170

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  G+  +R+    G    +    +      + NRR++I V
Sbjct: 171 VSKGIERNRVY-TEGKGEKQPVADNRTKEGRAKNRRVEIEV 210


>gi|225011410|ref|ZP_03701848.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003913|gb|EEG41885.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 370

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 83/222 (37%), Gaps = 25/222 (11%)

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE--NYFLPPLSKEKILAMKR 188
           +  +   + + + K +      K + + +  ++  +  ++E        L ++ ++  + 
Sbjct: 159 VREIPIQKLAANEKTTAEEIKGKYRLITRQVEVSPAQTRQEVIPSKSQTLERQILVTDET 218

Query: 189 KKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            K +    +  + I   L         + V       G L+ I        +   S+   
Sbjct: 219 TKEITVPAESTEIIKKILVKKGGTTAWREVPCTIPERGELLPIH-------YALGSAALT 271

Query: 246 PETIVVLQK--IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            ++  ++ +  +  + A    ++ I  HTD+   R     N  LS  RA S  + L+  G
Sbjct: 272 SKSTKIIDEYILARMKADKNILVEIGSHTDS---RGTDSLNMSLSERRAKSVVEYLISKG 328

Query: 304 VSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           +++ R+    G+   +L          S+ +++ NRR +  V
Sbjct: 329 INKQRLIA-EGYGEDKLLNDCENGVDCSESLHANNRRTEFKV 369


>gi|315110066|gb|EFT82042.1| OmpA family protein [Propionibacterium acnes HL030PA2]
          Length = 120

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWR 286
           ID   + +FD  S +  P    ++ +  + L     +  I + G+TD+      A  N  
Sbjct: 8   IDLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLD 64

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDILVED 340
           LS  RA S  +VL         I+ ++ G        ++D       NRR+ I V++
Sbjct: 65  LSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRRVTITVKE 119


>gi|152995560|ref|YP_001340395.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150836484|gb|ABR70460.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 296

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
           R   +F  +           L  +   ++    V  I I GHTD        RDN  LS 
Sbjct: 183 RTAALFPTNGVNLTDRIKARLDLVALYVSSDPSVEYIYIDGHTD---VIGSRRDNRELSK 239

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            RA      L++ GV   +I              ++       NRR+ I +E
Sbjct: 240 VRAEKVTSYLLEKGVPAGKIIS-RYHGERYPSTTNNTAQGRERNRRVTIRLE 290


>gi|146306425|ref|YP_001186890.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574626|gb|ABP84158.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 315

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I + +          I GH D          N  LS  RA +
Sbjct: 183 FPGGGIELDAMAKAKLDIILDFVKADPSINSFQIDGHADN---SGNRLTNRDLSRRRALA 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
             + L+  GV  ++I+ +         + ++     + NRR
Sbjct: 240 VQEYLVAGGVPAEQIT-VRFHGERYPLVPNNNEANRAKNRR 279


>gi|89889717|ref|ZP_01201228.1| hypothetical protein BBFL7_01535 [Flavobacteria bacterium BBFL7]
 gi|89517990|gb|EAS20646.1| hypothetical protein BBFL7_01535 [Flavobacteria bacterium BBFL7]
          Length = 352

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHT----DASP- 276
           G +I +       +F K  S  L E+  +L ++ E+L A       I GH      A P 
Sbjct: 231 GQVIRL----ENILFYKGRSTILEESQPLLDRVAEILIAREDIHFEIHGHVCCINPAYPD 286

Query: 277 --FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
              R+  + N  LS  RA + Y++L   GV   R+ +  G+   R     D ++   RR+
Sbjct: 287 AYNRDTKKSN--LSHARALAIYKILRSRGVKHTRM-RFKGYGRTRPLGGIDKLD---RRV 340

Query: 335 DILV 338
           ++ +
Sbjct: 341 ELYI 344


>gi|325577896|ref|ZP_08148129.1| outer membrane protein P5 [Haemophilus parainfluenzae ATCC 33392]
 gi|325160326|gb|EGC72453.1| outer membrane protein P5 [Haemophilus parainfluenzae ATCC 33392]
          Length = 366

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      +++ G+TD          N +LS  RA S 
Sbjct: 253 FAFGKANLKPQAKATLDGIYGEIAQINNANVAVAGYTDRI---GKDAPNLKLSQRRADSV 309

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338
              L+  GV    IS +  G A+       D +            +RR++I V
Sbjct: 310 ANYLVAKGVPAQNISAVGHGKANPVTGSTCDAVKGRKALIACLAPDRRVEIAV 362


>gi|323700864|ref|ZP_08112776.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323460796|gb|EGB16661.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 392

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD   +   P ++ VL  +GE L         I + GHTDA      A  N  LS  RA 
Sbjct: 283 FDFDKATIQPASLAVLDALGETLNSPEFKGRSIIVGGHTDA---SGGAEYNLTLSKQRAE 339

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           +    L+    ++ D I  + GF   R             NRR++I
Sbjct: 340 AVKSYLVDKWHINPDLIEAV-GFGKSRPLTEGTTAADQQRNRRVEI 384


>gi|163738854|ref|ZP_02146267.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|163741898|ref|ZP_02149288.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161385071|gb|EDQ09450.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161387659|gb|EDQ12015.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 636

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L +I ++LA      + I+GHTD+         N  LS  RA S 
Sbjct: 499 FEPGSATVAAGSRDTLDQIADILARCDGVRLEIQGHTDSQ---GREEMNQTLSQSRAQSV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L    +     +   G+       ++D  +    NRRI+
Sbjct: 556 LNELRGRRLVTSSFTA-KGYGESTPIASNDTEDGREANRRIE 596


>gi|126729097|ref|ZP_01744911.1| OmpA family protein [Sagittula stellata E-37]
 gi|126710087|gb|EBA09139.1| OmpA family protein [Sagittula stellata E-37]
          Length = 227

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+      I  L++    +         + GH D          N  L L RA + 
Sbjct: 83  FAFNSAQLDQGAIDTLREQARWIRQFPEVRFRVYGHADKV---GNQAYNKSLGLRRANAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+S  R+  +  F   +  I ++     NRR
Sbjct: 140 VNYLVSQGISRSRLEAVVSFGETQPLIVTEGRERRNRR 177


>gi|315223627|ref|ZP_07865481.1| immunogenic peptidoglycan-associated lipoprotein PG4
           [Capnocytophaga ochracea F0287]
 gi|314946408|gb|EFS98403.1| immunogenic peptidoglycan-associated lipoprotein PG4
           [Capnocytophaga ochracea F0287]
          Length = 660

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           SL    E+  +   +     + N ++   +  + +E   + ++   L  L    +  L  
Sbjct: 468 SLKLIEEQNSNKEGTFSFLYTSNCKDEQLIIKIIREGFSSDEQNITLTGLKDAYAEVLLS 527

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            + +     +  + ++  + I      +   FD   +   P+    L KI +V+      
Sbjct: 528 PIVEKKPIKIGDDLSKE-LKI------DNIYFDYDKANIRPDAAEQLAKIVKVMEEYPTM 580

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323
            I +R HTD+   R     N  LS  RA S  + L+  G+ +DRI+   G+   +L    
Sbjct: 581 KIDVRLHTDS---RGSDSYNLALSQRRAKSTIKWLIAHGIHKDRITG-KGYGETQLVNGC 636

Query: 324 ------SDPMNSANRRIDILV 338
                 ++  + ANRR + ++
Sbjct: 637 SNGVPCTEEQHQANRRSEFII 657


>gi|255037115|ref|YP_003087736.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254949871|gb|ACT94571.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 484

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   ++  PE   +L+ +  ++  +   + + GHTD    R   R N  LS  R  +  
Sbjct: 381 FDTDKNVLKPEFQELLKNVAALMNKNGCRLQLAGHTDR---RASDRYNIALSKRRVEAVK 437

Query: 297 QVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
             L+ ++G+ +     +  F   +     A+ P    NRR+++ +  
Sbjct: 438 NFLINEAGLQDPSKVIVDYFGSFKPIADSATRPGLQKNRRVELKLLP 484


>gi|83943938|ref|ZP_00956395.1| OmpA family protein [Sulfitobacter sp. EE-36]
 gi|83845185|gb|EAP83065.1| OmpA family protein [Sulfitobacter sp. EE-36]
          Length = 234

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        VL++    +         + GHTDA         N  L L RA S 
Sbjct: 90  FAFNSAQLDGAAQAVLRRQAGWIRQFPEVRFRVYGHTDAV---GSNSYNKALGLRRAQSV 146

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  F   +  I +     ANRR
Sbjct: 147 VAFLSTQGISRSRLEAVVSFGETQPLIVTQGRERANRR 184


>gi|56708795|ref|YP_164836.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
 gi|56680480|gb|AAV97145.1| OmpA family protein [Ruegeria pomeroyi DSS-3]
          Length = 180

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   S     E    L++  +          I GHTD+   R     N RLS++RA S 
Sbjct: 82  FFATDSYRISSEGQARLRQFFQ--ETGANGYIITGHTDS---RASDAYNLRLSVNRANSV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +V   +G    RI  + G+     ++ +      + NRR++I+
Sbjct: 137 ARVGRATG---ARIVDVRGYGERDPRVPNTSAANMAQNRRVEII 177


>gi|254463240|ref|ZP_05076656.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206679829|gb|EDZ44316.1| OmpA family domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 316

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD 283
            + + D     MF   SS     +   LQ + + L ++ST  +++ GHTDA         
Sbjct: 203 RVILSDL----MFQTGSSNLGEGSFKSLQNLADYLRSNSTRKVALVGHTDAE---GSLEG 255

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           N  LS  RA S  + L+++ GV  D++S    GF        S    +ANRR++ ++   
Sbjct: 256 NIALSKRRASSVRKRLIEAYGVPTDQLSADGVGFLSPVASNLSAAGRTANRRVEAVLIST 315

Query: 342 Q 342
           Q
Sbjct: 316 Q 316


>gi|172063966|ref|YP_001811617.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171996483|gb|ACB67401.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 170

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 44  ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D        R    LS  RA      L+  G+   R++ I  G +       +    
Sbjct: 101 GYSDDEGTVAYDR---ELSRRRAEVVAIELVDVGLDGKRVAVIGKGKSDPVGDNRTPTGR 157

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 158 AQNRRAAIVVSPR 170


>gi|322418609|ref|YP_004197832.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320124996|gb|ADW12556.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 426

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     L+ +G+ L    +    I GHTD++        N RLS  RA + 
Sbjct: 314 FDTDKWNIKPRYHAELKTVGDFLNQFPDAYGEISGHTDST--HTDDY-NQRLSERRAKAV 370

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343
              ++K+  +   R++   G+   R    +      + NRRI+  LV  ++G
Sbjct: 371 RDYIVKNFKIDPKRLTG-KGYGEKRPMATNKTAVGRAKNRRIEANLVCAKKG 421


>gi|163745388|ref|ZP_02152748.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45]
 gi|161382206|gb|EDQ06615.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45]
          Length = 317

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F+  +S         L+++ E+L       +++ GHTDA         N  LS  R
Sbjct: 208 NRLEFETGTSALGAGPFATLERLAELLKADPGLRVALVGHTDAV---GSLEANTVLSRKR 264

Query: 292 AYSAYQVLMKSG-VSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           A +  + L++S  V  DR+ ++ +G+   R    ++     NRR++++V  
Sbjct: 265 AEAVRERLVQSYDVDPDRLEARGAGYLAPRGSNLTEAGREENRRVEVVVLS 315


>gi|331004883|ref|ZP_08328300.1| Outer membrane protein [gamma proteobacterium IMCC1989]
 gi|330421337|gb|EGG95586.1| Outer membrane protein [gamma proteobacterium IMCC1989]
          Length = 197

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +S+         L       A +  V  IS+ GH D+   R     N  LS  RA +
Sbjct: 90  FATNSAELKDAGKAALNTFA-TRAKALNVSGISVVGHADS---RGAESYNQALSEKRANT 145

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L   G+    + +  G        ++D     + NRR+DI V
Sbjct: 146 VKSYLESQGIVGS-LIRAEGQGETSPVASNDTAEGRAQNRRVDITV 190


>gi|261251125|ref|ZP_05943699.1| protein F-related protein [Vibrio orientalis CIP 102891]
 gi|260937998|gb|EEX93986.1| protein F-related protein [Vibrio orientalis CIP 102891]
          Length = 205

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282
           +++ + D      F+  SS   P++   L  +G  LA      I I GH D++       
Sbjct: 90  VMVKLKDTIK---FNTGSSNVSPDSQYWLDMMGSYLATQPGIDIVIDGHADST-GAPTFN 145

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           D   LS+ RA +  + L+++ V+ D I    G+  +    ++        NRR+++L
Sbjct: 146 DG--LSMKRASAVKRQLVRNNVAMDSIF-TRGYGEYVPACSNKTKAGKACNRRVEVL 199


>gi|325106387|ref|YP_004276041.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324975235|gb|ADY54219.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 666

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            +   P +   L  + +++  + ++ I +  HTD     + A  N  LS  RA S    L
Sbjct: 562 KAELTPMSAQALDILADIMMDNPKITIELSSHTDG--IGSDAY-NLDLSQRRAQSCVDYL 618

Query: 300 MKSGVSEDRISKISGFAHHRLKIAS------DPM-NSANRRIDILVEDR 341
           +  G+S  +I +  G+        +      +P   + NRR +  V  +
Sbjct: 619 IAKGISAGKI-QAKGYGKSMPIAPNTINGKDNPEGRALNRRTEFKVIKK 666


>gi|298565977|dbj|BAJ09608.1| hypothetical protein [Pasteurella pneumotropica]
          Length = 289

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-MF---DKSSSIPLPETIVVLQKI 255
              +S L  +N     +      G  +  ++  +   +F       +  LP     +++ 
Sbjct: 138 EQEVSKLPKENQTLSRVPSPANCGAAVLAVESLDASALFGFNKSGYNDILPNGKEKIREF 197

Query: 256 GEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            + +        I + GHTD  P  + A  N  LS  RA +    L K+GVS   I  + 
Sbjct: 198 ADKVKEMPSISKILVSGHTD--PIGSTAY-NQTLSQKRANTVKLALQKAGVSTP-IEAV- 252

Query: 314 GFAHHRLKIAS---------DPMNSANRRIDILV 338
           G+      + +         +  N  NRR++I V
Sbjct: 253 GYGKAEPVVTTCDTYKDAQRNQCNQPNRRVEIAV 286


>gi|225012050|ref|ZP_03702487.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003605|gb|EEG41578.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 299

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           LI +I      +F+    I   E ++ L+++  +L       I + GHTD +        
Sbjct: 191 LIQLI------LFETDQDILTEEALISLEEVYSILIQYPNLNIIVEGHTDDT---GGVNY 241

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
           N  LS     +  + L+  G+S  +I   + +   R    +        NRR+
Sbjct: 242 NQELSEKIVATVLRFLINRGISSSKIKSAA-YGETRPLRTNSTSEGRRYNRRV 293


>gi|213163752|ref|ZP_03349462.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 196

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +  +++ G+TD++   ++   N RLS  RA S    L+  GV   RI + SG      
Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANP 196


>gi|126733592|ref|ZP_01749339.1| peptidoglycan-associated lipoprotein, putative [Roseobacter sp.
           CCS2]
 gi|126716458|gb|EBA13322.1| peptidoglycan-associated lipoprotein, putative [Roseobacter sp.
           CCS2]
          Length = 173

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F   +S   PE   +L    + +L ++     I GH D          N  L   R
Sbjct: 62  DRVLFAVDTSTITPEGQTILDGQAQWLLTNADYRAVIEGHADEQ---GTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +  + L+  GV   R+ +++ F   R     + +   + NRR
Sbjct: 119 ANAVREYLVSRGVPSTRL-QVTSFGKERPIAICSEESCYAQNRR 161


>gi|238797533|ref|ZP_04641031.1| OmpA family protein [Yersinia mollaretii ATCC 43969]
 gi|238718674|gb|EEQ10492.1| OmpA family protein [Yersinia mollaretii ATCC 43969]
          Length = 168

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD       P+ +  +Q IG+ L       + + GHTD++        N +LS  R
Sbjct: 61  NKVLFDSDVKKLNPDGVRTVQNIGKALTAVGITHLRVDGHTDST---GEDSYNQQLSYQR 117

Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
           A +    L   G+    I  +  G         +    + NRR+ ++V
Sbjct: 118 AAAVADTLALIGIPRANIDVRGRGKLDPVADNRTAKGRAENRRVSMIV 165


>gi|167625831|ref|YP_001676125.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167355853|gb|ABZ78466.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 201

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F   S    P+    ++ I   +         I GH   +        N  LS 
Sbjct: 73  QELKVLFANDSYYIDPQYYPQVEVIATFMRDYPNTQAVIEGHCSKT---GSHEHNQVLSQ 129

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +RA +   +L  + G+  DR+S + G++  R    +    +   NRR+
Sbjct: 130 NRANAVSSLLAERFGIDSDRLSAV-GYSFDRPVDPTHTRAAHKVNRRV 176


>gi|220921338|ref|YP_002496639.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219945944|gb|ACL56336.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +SS   P+ + V++ +G  LA          I GHTD    +   + N  LS  RA 
Sbjct: 111 FDYNSSKIGPKALPVVKSLGAALARPELKGNTFLIVGHTDG---KGKDQINQTLSERRAE 167

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  Q ++++ GV    +  + G+   +LK  ++P+++ NRR+ 
Sbjct: 168 AVKQYIVQNYGVPASNLVSV-GYGKSQLKDTANPLSAVNRRVT 209


>gi|126733574|ref|ZP_01749321.1| OmpA family protein [Roseobacter sp. CCS2]
 gi|126716440|gb|EBA13304.1| OmpA family protein [Roseobacter sp. CCS2]
          Length = 216

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S++   +    L +  + +         + GHTD          N  L L RA +A
Sbjct: 77  FAFNSTVLDADARSTLMRQADWIRQFPEVRFKVYGHTD---LVGSQGYNRSLGLRRAQAA 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G++ +R+  +  F   +  + +D     NRR
Sbjct: 134 VAFLASQGINRNRLEAVVSFGETQPLVVTDGRERRNRR 171


>gi|127511566|ref|YP_001092763.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126636861|gb|ABO22504.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 481

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 216 LFETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
                  G+   I  Q     +  +F   S   LPE   V+  +   L    +    + G
Sbjct: 350 RVVIDLEGLKDKIAQQGHVALDGLLFKFDSDQMLPEADEVITTLATYLKSHPKQHFYVVG 409

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           HTD          N  LS  RA +    L    G+++ ++S + G   +     +  +  
Sbjct: 410 HTDDQ---GKQGYNKGLSEQRAKAVVATLTQSHGINKAQLSPM-GVGEYVPVANNLDEAG 465

Query: 328 NSANRRIDILVED 340
              NRR+++++  
Sbjct: 466 RQRNRRVELVLRS 478


>gi|330973095|gb|EGH73161.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 300

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARARARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   GV E +I+ +             ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGVPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281


>gi|298488736|ref|ZP_07006765.1| Outer membrane protein, OmpA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156809|gb|EFH97900.1| Outer membrane protein, OmpA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 301

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +         +   ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLVPNTNEANRARNRRVNVHLER 281


>gi|148977050|ref|ZP_01813696.1| protein F-related protein [Vibrionales bacterium SWAT-3]
 gi|145963710|gb|EDK28971.1| protein F-related protein [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+ P P     L  +G  L+   +  I I GHTD +      R N  LS  RA   
Sbjct: 106 FKTGSAFPEPAYNQWLDTLGSYLSQRQDIDIVIEGHTDNT---GTDRINDPLSEQRAKEV 162

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L  + VS   I    GF  +      AS    + NRR+++++
Sbjct: 163 KARLESNYVSSRSIY-TRGFGEYVPACTNASPQGKACNRRVELML 206


>gi|260062002|ref|YP_003195082.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501]
 gi|88783564|gb|EAR14735.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501]
          Length = 375

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           + +F+  +          L ++ + L +  +  + +RGHTD+   R     N +LS  R 
Sbjct: 261 SLLFEFDAHQLTDAGKEALHRVYDALRSDLSLFLELRGHTDS---RGAPAYNQQLSEQRC 317

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            +  + L   G+   RI +  GF   R     +S+     NRR++ L+  
Sbjct: 318 RAVARYLEGLGLDSVRI-RWIGFGAARPVAGNSSESGRRRNRRVEFLIRS 366


>gi|119944499|ref|YP_942179.1| OmpA domain-containing protein [Psychromonas ingrahamii 37]
 gi|119863103|gb|ABM02580.1| OmpA domain protein [Psychromonas ingrahamii 37]
          Length = 195

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 12/178 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S     +      +K  +      K   +LA    +     +  + ++  + E T   ++
Sbjct: 23  SSKSYNDSAAMEANKAAMEQAAMDKAAMELAAMERAAEENKIETDGLQ--VVELTEEELM 80

Query: 226 ISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
                    + T  FD  +S+  PE   +L    + L ++  + ++I GHTD    +   
Sbjct: 81  AQQYSDAILQKTIQFDFDTSMIKPEFTSILDAHAKFLVNNPSKKVTIEGHTDE---KGTP 137

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
             N  LS  RA S    L   GV  D+IS +S +   +      S+   + NRR +++
Sbjct: 138 GYNIALSERRAMSVSVYLENMGVLPDQISVVS-YGEEKPLNFGHSEASWADNRRAELV 194


>gi|120602698|ref|YP_967098.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562927|gb|ABM28671.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4]
 gi|311234162|gb|ADP87016.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1]
          Length = 344

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        +L +   ++  +    + + GHT           N +LS  RA S 
Sbjct: 243 FALNSAKLDASATSILTEAARIIKANPGKKLLVAGHTCNL---GTDAYNLKLSDARAKSV 299

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
              L+K GV   R+    GF   + K  +  +   S NRR+++
Sbjct: 300 KDFLVKQGVEASRLD-TFGFGESQPKYDNGTEQGRSMNRRVEL 341


>gi|83648072|ref|YP_436507.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Hahella chejuensis KCTC 2396]
 gi|83636115|gb|ABC32082.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic components [Hahella chejuensis KCTC 2396]
          Length = 513

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S    E    +  + E L H     + IRGHT     R  A  N +LSLDRA + 
Sbjct: 404 FASGTSELTLEGKREVDLLMENLQHYPNFRVEIRGHT---GVRGDAEANKQLSLDRAEAV 460

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSAN-R--RIDILVEDRQ 342
           Y+ +     V  +R  +  GF   +    + ++ + + N R  R++I++   +
Sbjct: 461 YRYIEVTYEVDPNRF-RFVGFGGEKPLPQLPNESLRAYNYRLPRVEIVLVSGE 512


>gi|227873541|ref|ZP_03991786.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840631|gb|EEJ51016.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 385

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 16/204 (7%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            S+  +   G    +   +      ++                    + +L  +I+  L+
Sbjct: 47  RSIFPNGRPGDKSAEQIIINGQATNKDEPAGEIGDSGAPENTVDPNNINELYLQIAQALN 106

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G   D +           G   + +  ++   F   SS+  P+    L    + +A    
Sbjct: 107 GAGIDGV-------EVSRGQDYTFVVFKDKAFFAGDSSVITPQGQETLSIFCDTIAPDAN 159

Query: 265 V---ISIRGHTD-ASPFRNIARDNWR-LSLDRAYSAYQVLMKSGV-SEDRISKISGFAHH 318
               +++ GHT  A P R     N R LS+ RA      +   G+ S D++  I G+   
Sbjct: 160 KLSQVNVMGHTAQADPERANNPRNDRILSVMRAAEVCLFIQGRGIISPDKLVSI-GYGQF 218

Query: 319 RLKIASDP--MNSANRRIDILVED 340
                +      + NRR++IL+ D
Sbjct: 219 HPIADNATSEGRAKNRRVEILLID 242


>gi|89055277|ref|YP_510728.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88864826|gb|ABD55703.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 481

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S+      +  + ++   + +     + + GHTDA         N  LS +RA +
Sbjct: 377 LFDFDSATLRRAGLQAVSELAAAIRSGQVSQVIVDGHTDA---AGSDAYNQTLSQERAVA 433

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
             Q LM  GV++  +     F   R    +  +     NRR+++L+
Sbjct: 434 VAQALMVQGVAQG-LLTTRAFGESRPVADNGSEAGAQQNRRVEVLL 478


>gi|294139179|ref|YP_003555157.1| OmpA family protein [Shewanella violacea DSS12]
 gi|6141577|dbj|BAA85891.1| unnamed protein product [Shewanella violacea]
 gi|293325648|dbj|BAJ00379.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 220

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++      TR+G  I +    N   F        P    VL  +  V        I+I G
Sbjct: 92  LRSTGVSVTRSGDNIVLN-MPNEVTFGVDEVHLNPGAKNVLNSVALVAKEYDNTQINILG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TD+         N RLS  RA      L+   V   R+ +  G    R   ++      
Sbjct: 151 YTDS---SGSESYNLRLSKVRAVEVADYLISQKVEYARV-RSEGIGEARPIASNSTAQGR 206

Query: 331 --NRRIDILV 338
             NRR++I++
Sbjct: 207 TQNRRVEIIL 216


>gi|117919364|ref|YP_868556.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117611696|gb|ABK47150.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 485

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  + +    + GHTD    +     N  LS  RA +
Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQNPKLSFYVVGHTDD---KGERSYNQSLSERRAAA 434

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +       +D     NRR+++++   +
Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484


>gi|289672144|ref|ZP_06493034.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 831

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    + +++ +    +               ++++L   +   L+ 
Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827


>gi|149277383|ref|ZP_01883524.1| outer membrane protein 3a [Pedobacter sp. BAL39]
 gi|149231616|gb|EDM36994.1| outer membrane protein 3a [Pedobacter sp. BAL39]
          Length = 657

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              +++   +     +   L  +  +L  + +  I +  HTD    +  A  N  LS  R
Sbjct: 544 KDVLYEFDKADLTELSKGKLDYLYTILIDNPDIDIELSAHTDN---KGTAEYNMDLSNRR 600

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDR 341
           A S    L+  G+  +R++   G+   +    +       +P   + NRR +  V  +
Sbjct: 601 AQSCLDYLVTKGIPAERMTS-KGYGLTKPVAPNQFSDGKDNPEGRAMNRRTEFKVLKK 657


>gi|298207484|ref|YP_003715663.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
 gi|83850120|gb|EAP87988.1| OmpA family protein [Croceibacter atlanticus HTCC2559]
          Length = 626

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 102/290 (35%), Gaps = 21/290 (7%)

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQ----NKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           YF+  G   +      +   N  +          ++   D+     +++   G  +  + 
Sbjct: 342 YFSSDGHLGLGGLDVFYASNNNGQYGKAKNIGTPVNSKGDDFAFTLNLESGNGYVSSNRG 401

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            + L +NI+ ++  +     + ++    +K  +   + +++   +KE            +
Sbjct: 402 -KALVDNIYGVTLIEPLCEVQLAVKVVDDKTNNAISNANVDLYDDKENKITTVVTDANGM 460

Query: 184 LAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-----MF 237
                + ++       I    S  V     K    E T     I  I   +       +F
Sbjct: 461 TNFTVQCEQAYQAQVNIDDYESNSVTMAATKDATKELTVRLKPIEAIVTEDRVILNPILF 520

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D   S   P+    L K+ +V+    E  I +  HTD    +     N  LS  RA S  
Sbjct: 521 DYDKSNIKPQAAFELDKLVQVMNKYPEMEIFVESHTDN---KGPNDYNMSLSERRAKSTV 577

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341
           Q ++  G++++RIS   GF   +  +      SD     NRR + ++  +
Sbjct: 578 QYVVSKGIAKERISG-KGFGESKPAVECGENCSDEQRQTNRRSEFVIIKK 626


>gi|227536324|ref|ZP_03966373.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243821|gb|EEI93836.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 650

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L ++   +  +    I +  HTD+   R  A+ N +LS +RA +A   ++  
Sbjct: 549 IREDAKPILNQLVRTMRDNPTLKIELSSHTDS---RATAKYNMKLSQNRAQAAVDYIVSR 605

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ DRI    G+   +L          SD  + ANRR +I V +
Sbjct: 606 GIARDRIVA-KGYGESKLVNKCADGVKCSDAEHQANRRTEIKVLE 649


>gi|167035318|ref|YP_001670549.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861806|gb|ABZ00214.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 308

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L  I + +        I + GH+D          N  LS  RA +
Sbjct: 179 FPGGGTELDASARARLDVILDYMKADPTVNHIELDGHSDN---SGNRLTNRDLSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
                   GV+E++I  +         + ++     + NRR++I ++ 
Sbjct: 236 VADYFKAHGVAEEQII-VRFHGEQYPLVKNNSAANRARNRRVNIELDR 282


>gi|86143638|ref|ZP_01062014.1| Thrombospondin type 3 repeat:OmpA/MotB [Leeuwenhoekiella blandensis
           MED217]
 gi|85829681|gb|EAQ48143.1| Thrombospondin type 3 repeat:OmpA/MotB [Leeuwenhoekiella blandensis
           MED217]
          Length = 461

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           +    +FD   +     +   L +I  ++         + GH D+    + A  N  LS 
Sbjct: 353 EAGRILFDTDKATIRTSSYETLARIASIVKEYPTASFEVEGHADSR--ASNAY-NMDLSE 409

Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
            RA S    L  K GV+  ++  I  +   +    +        NRR+ + +E
Sbjct: 410 RRAQSVVDYLTSKEGVNASQL-SIKAYGEEQPIAPNTTAAGMQLNRRVKLTLE 461


>gi|302189602|ref|ZP_07266275.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 831

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    + +++ +    +               ++++L   +   L+ 
Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827


>gi|260591055|ref|ZP_05856513.1| OmpA family protein [Prevotella veroralis F0319]
 gi|260536920|gb|EEX19537.1| OmpA family protein [Prevotella veroralis F0319]
          Length = 695

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 34/145 (23%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I++    +   +D   +   PE+   L  + ++L  +  V I +  HTD     +    N
Sbjct: 522 INVPVLIDNIFYDFDKATLRPESEKALDDLVKLLNENPNVTIELSAHTDC--IGSADY-N 578

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL------------------------ 320
            RLS  RA +    L   G+++DR++ + G+   R                         
Sbjct: 579 KRLSQRRADAVVAYLTAHGIAQDRLTPV-GYGKERPKKIRKKLTEKYNWLKENDVLTEDF 637

Query: 321 --KIASDPM---NSANRRIDILVED 340
             K+  D     N  NRR + +V  
Sbjct: 638 IKKLPKDKQEVCNQLNRRTEFIVLR 662


>gi|187927866|ref|YP_001898353.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J]
 gi|241662454|ref|YP_002980814.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D]
 gi|187724756|gb|ACD25921.1| OmpA/MotB domain protein [Ralstonia pickettii 12J]
 gi|240864481|gb|ACS62142.1| OmpA/MotB domain protein [Ralstonia pickettii 12D]
          Length = 218

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L      + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +   +          NRR+D+ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVDVEVVGTR 215

Query: 342 QG 343
           + 
Sbjct: 216 KA 217


>gi|46579833|ref|YP_010641.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449248|gb|AAS95900.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 357

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        +L +   ++  +    + + GHT           N +LS  RA S 
Sbjct: 256 FALNSAKLDASATSILTEAARIIKANPGKKLLVAGHTCNL---GTDAYNLKLSDARAKSV 312

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
              L+K GV   R+    GF   + K  +  +   S NRR+++
Sbjct: 313 KDFLVKQGVEASRLD-TFGFGESQPKYDNGTEQGRSMNRRVEL 354


>gi|24375049|ref|NP_719092.1| OmpA family protein [Shewanella oneidensis MR-1]
 gi|24349795|gb|AAN56536.1|AE015790_7 OmpA family protein [Shewanella oneidensis MR-1]
          Length = 370

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
            +   +  F   S++   E    ++++   +  + E  + I GH            N  L
Sbjct: 251 QEDVGSIQFANDSAVVKKEYYKDIERLANYMNKNPEFTVEIAGHASNV---GKPEYNMVL 307

Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342
           S  RA +  ++L++  G+S+ R++  +G+   +  +A +    ++ANRRI+ +V   +
Sbjct: 308 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGNSKEAHAANRRIEAIVTTTE 364


>gi|332993983|gb|AEF04038.1| sodium-type flagellar protein MotY [Alteromonas sp. SN2]
          Length = 292

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S+     +   L  IGE L   +++  + + G+TD+        +N +LS+ RA      
Sbjct: 192 STELTKYSQKRLTMIGEYLKEDSDLELVLLDGYTDSY---GGRWNNEQLSIRRANEVKSY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334
           L   GV +DRI +++G    R    +D     + NRR+
Sbjct: 249 LTTIGVPDDRI-QLTGHGEKRHIANNDTRESRAQNRRV 285


>gi|332524606|ref|ZP_08400809.1| OmpA family domain protein [Rubrivivax benzoatilyticus JA2]
 gi|332107918|gb|EGJ09142.1| OmpA family domain protein [Rubrivivax benzoatilyticus JA2]
          Length = 240

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+      I  L  +   L  +      + GHTD +  R++   N  LS +RA + 
Sbjct: 138 FEPGSARLTDAGIERLDGLLAALNRAPARRFEVVGHTDDAGPRDL---NLALSRERAEAV 194

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
              L+  GV+  RI  + G         +      + NRRI++
Sbjct: 195 RAHLVARGVAAARIE-VRGAGPDEPAADNGTAAGRARNRRIEL 236


>gi|295134914|ref|YP_003585590.1| OmpA/MotB domain-containing protein [Zunongwangia profunda SM-A87]
 gi|294982929|gb|ADF53394.1| OmpA/MotB domain-containing protein [Zunongwangia profunda SM-A87]
          Length = 618

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 16/153 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQ 253
           + S  +G V  + + GV F  +    L+ I             F+ +     P     L 
Sbjct: 467 VKSITTGNVHRDTLDGVNFLLSSYNDLVEIDGDEEKIKIDPIFFEFNEYDIRPRAAKQLD 526

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            I  VL    E  I I  HTD+   R     N  LS +RA S    L+  G++E+RI  I
Sbjct: 527 HIVYVLESFPEMKIKIESHTDS---RGSDTYNLLLSQNRAKSTKNYLISRGIAENRIVSI 583

Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILV 338
            G+    +          +D  +  NRR + ++
Sbjct: 584 KGYGEIEILNRCVNGVECNDEEHEENRRSNFII 616


>gi|172062069|ref|YP_001809721.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171994586|gb|ACB65505.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 555

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 229 IDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           +   +  +F    +   P      L  +  ++  + +  + I GH D+      A  N R
Sbjct: 438 VQIDSLSLFASGKATFSPAHERRELAHVLRLIRENPDQRVLIEGHADSE---GSADANLR 494

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
           LS  RA +    L+  G        I G    R    +  +   + NRR+D+ +  
Sbjct: 495 LSEARARAIRDWLVAEGGLSVARFAIQGMGDIRPIADNRSEAGRALNRRVDVSLIP 550


>gi|118588450|ref|ZP_01545859.1| probable outer membrane lipoprotein [Stappia aggregata IAM 12614]
 gi|118439156|gb|EAV45788.1| probable outer membrane lipoprotein [Stappia aggregata IAM 12614]
          Length = 162

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           II+      FD+ S++   E  + ++   + L  +   ++ I+GH D        +    
Sbjct: 40  IINVGRRIYFDQGSAVVTDEARITIENQAKWLNKNKKWLVKIQGHADDPGSEAAQKT--- 96

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334
           LS  RA +    L+K GVS  R+  + G+   R     D     S NRR+
Sbjct: 97  LSTQRANAVMAELVKLGVSPKRMW-VKGYGVERPVTDCDQVTCQSQNRRV 145


>gi|326794907|ref|YP_004312727.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545671|gb|ADZ90891.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 209

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD    I  P     ++K+ + +  +    I I GHTD          N  LS  RA +
Sbjct: 81  LFDSGKDIVKPRYYSEVKKLADFMRKNPQSSIVIEGHTDDV---GSEELNLGLSQRRASA 137

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              VL  S +      K  G+   R    +D       NRR+   +  RQ
Sbjct: 138 IASVLTDSFMVRKSRVKGVGYGETRPIATNDTATGREQNRRVVAEIFARQ 187


>gi|71733309|ref|YP_276024.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257486625|ref|ZP_05640666.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289624957|ref|ZP_06457911.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650466|ref|ZP_06481809.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71553862|gb|AAZ33073.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320325629|gb|EFW81691.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327087|gb|EFW83101.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867247|gb|EGH01956.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330879063|gb|EGH13212.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889567|gb|EGH22228.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989530|gb|EGH87633.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010107|gb|EGH90163.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 301

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +         +   ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLVPNTNEANRARNRRVNVHLER 281


>gi|269962741|ref|ZP_06177084.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832543|gb|EEZ86659.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 282

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 17/208 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255
           +   LS             E  R+ + I   I D  N    F   S+   P+ +  L + 
Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVADIYDLLNVDNQFAVDSAEINPKYMGHLAEA 185

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L       + + GH DA+        N +L+ DRA    + L   G++ DR+ +   
Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVED 340
                             NRR+ I V +
Sbjct: 242 VGETLPLYEGQTPAVRLTNRRVSIEVLN 269


>gi|315637079|ref|ZP_07892302.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315478615|gb|EFU69325.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 854

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F+ +S++   ET   +      L  +     I I GH    P  + A  N +LS  RA 
Sbjct: 748 LFENNSAVIKEETKGKVLSFARYLVDNKEFNTI-IEGHASKDPTASAAH-NQKLSEQRAS 805

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           +   +L+ +GV   RI  I G  H+     +      + NRRID ++  +
Sbjct: 806 AIKNLLISNGVEASRIQSI-GKGHNEPIADNSTAEGQALNRRIDAILIRK 854


>gi|294782096|ref|ZP_06747422.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA]
 gi|294480737|gb|EFG28512.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA]
          Length = 183

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 13/146 (8%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            +    A+      +    + G+ I       I+      +FD    +        L  +
Sbjct: 39  AIEDTEANKKPLEDIIVFDQEGVTIRREGNNLILSMPELILFDFDKYVVKDGIKPSLATL 98

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            + L  + +  I I G+TD   F      N  LS+ RA +  + L+  G     I  I G
Sbjct: 99  AKALGENKDIHIKIDGYTD---FIGTEAYNLDLSVKRARAIKEFLISKGAIGSNI-SIEG 154

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
           +        +      S NRR++ ++
Sbjct: 155 YGEQNPADTNQTAAGRSRNRRVEFII 180


>gi|70732179|ref|YP_261935.1| OmpA family outer membrane protein [Pseudomonas fluorescens Pf-5]
 gi|68346478|gb|AAY94084.1| outer membrane protein, OmpA family [Pseudomonas fluorescens Pf-5]
          Length = 304

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              LQ + + +        + + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIDLDARAKAKLQVMVDFIKADPTVNHVELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
             +    +G++E++I  +           +      + NRR+++ +E 
Sbjct: 235 VMEFFKANGLAENQIV-VRFHGERYPLAPNTNAANRAKNRRVNVHLER 281


>gi|327404330|ref|YP_004345168.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319838|gb|AEA44330.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 809

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +I L  +   L  +  +L       + I GHTD    +  A+ N  LS +RA + 
Sbjct: 706 FASGKAIILATSFKSLDDLAALLIKKPEWKLQIAGHTDN---KGDAKKNLTLSKNRAEAV 762

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            + L   GV   ++ K   F   +    +        NRR++
Sbjct: 763 KKYLTSKGVDATKL-KPEWFGQTKPIATNATPEGRQKNRRVE 803


>gi|302338591|ref|YP_003803797.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635776|gb|ADK81203.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1410

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 215  VLFETTRTG--ILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISI 268
            V     R G  + I   SII Q N   F +           VL ++ E+L  + +  I +
Sbjct: 1269 VDVLVVREGNLLKIKIASIIFQPNKAEFVEDDPEVAERNRYVLDRLAEILQKYRSYQIMV 1328

Query: 269  RGHTD----ASPFRNIARDNWRL---SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             GH      A P +    +   L   S  RA    + L++ G+  +R+  + G    +  
Sbjct: 1329 EGHAALINWADPVKAEREEQTELMPLSQARAEKVVEALVERGIDRNRLDAV-GVGGTKPL 1387

Query: 322  IA-SD-PMNSANRRIDILVEDRQ 342
            +  SD      NRR++ ++E ++
Sbjct: 1388 VPHSDIENRWKNRRVEFILEKKR 1410


>gi|75677209|ref|YP_319630.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74422079|gb|ABA06278.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 213

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  S+   P T   L  +G+ L     +  VI + GHTD    +     N  LS  RA 
Sbjct: 101 FDFDSAAVTPRTEPQLHSLGKALTSDELAGSVIMLGGHTDG---KGSDAYNQNLSERRAE 157

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L+++          +G+     K  +DP  + NRR++++
Sbjct: 158 AVKRFLVETYKIPAANLVAAGYGKEGYKNPADPFAAENRRVEVV 201


>gi|298372620|ref|ZP_06982610.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275524|gb|EFI17075.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 681

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
           +     ++        E+   L  + ++L  +  + I +  HTD+         N  LS 
Sbjct: 540 KMENIFYEFGKWNITKESEAELNNLVKLLEDNPNITIELSAHTDSV---GTDASNIELSQ 596

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            RA SA + L+ +G+++DR++   G+  ++  I  
Sbjct: 597 KRANSAVEYLIGAGIAKDRLTA-KGYGENKPVIVD 630


>gi|284038460|ref|YP_003388390.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283817753|gb|ADB39591.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 798

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +  K    TL G ++ +          + G +I+I    +   +D + +   P+  V L 
Sbjct: 650 EAMKDNMGTLGGHISKDGTGTTDIAMFKKGDIITI----DNIYYDLNKATIRPDAAVELD 705

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+ E+L     + I +R HTD+         N  LS +RA S    L   G++ +R+   
Sbjct: 706 KVVELLTKYPAMTIEMRSHTDSRATAVY---NKTLSGNRAKSVVAYLKSKGIAMERMIA- 761

Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILVE 339
            G+   +L          S+  +  NRR +I + 
Sbjct: 762 KGYGESQLLNKCKDGVECSEEDHQKNRRTEIKIL 795


>gi|229520255|ref|ZP_04409681.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM
           11079-80]
 gi|167832518|gb|ACA01828.1| hypothetical protein VPI2_0011c [Vibrio cholerae]
 gi|229342621|gb|EEO07613.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM
           11079-80]
          Length = 244

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234
            L ++  ++  D+   I       +A  NI+  V  E  +  +++ I D         +T
Sbjct: 40  ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99

Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283
             F    SSIP   T    ++ IG VL  + +          I I GHTD+       + 
Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKG 159

Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329
           NW LS DRA S + V           G  E+    ++  +SG+A  R   L  ++    S
Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLHESNQQEKS 219

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 220 QNRRIDI 226


>gi|262198258|ref|YP_003269467.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081605|gb|ACY17574.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 533

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQ-KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S   PE++ +L  ++   L  +  + + I G+TD        R N  LS  RA S
Sbjct: 427 FDTGQSALDPESMHLLNTQVLPQLEMAGGMYVRIEGNTDNV---GDKRGNQALSEARAQS 483

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               L++ G++  R+S   G        ++      +ANRR DI+    Q
Sbjct: 484 VLDYLVQKGINAKRLSA-RGNGSDSPVASNKTADGRAANRRTDIVFISGQ 532


>gi|126729072|ref|ZP_01744886.1| OmpA/MotB [Sagittula stellata E-37]
 gi|126710062|gb|EBA09114.1| OmpA/MotB [Sagittula stellata E-37]
          Length = 297

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLD 290
               +F   SS  +P+    L ++   +A +      + GHTDA+        N  LS +
Sbjct: 190 DGAVLFAHDSSDLMPDAKAALDELAAQIADANLSAFRVVGHTDAT---GSDAYNLTLSQE 246

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           RA +         V  +      G        +++       NRR++I+
Sbjct: 247 RAAAVRDYYASMDVLTNVSISSEGRGESNPLASNETEEGREQNRRVEII 295


>gi|326800681|ref|YP_004318500.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326551445|gb|ADZ79830.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 650

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F  +    LP +   L ++ ++L H+    I I GHTD +     A+ N  LS  R
Sbjct: 539 NNIFFPTNGYELLPTSESDLMELFQLLQHNKHIRIEITGHTDNT---GSAQANQVLSEKR 595

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A + Y  L+  G+ + R+    G+  +     +        NRR +  +
Sbjct: 596 ALAVYAYLLSKGIDKTRL-AYKGYGQNNPIADNTTEKGKQQNRRTEFKI 643


>gi|300771828|ref|ZP_07081699.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761214|gb|EFK58039.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 650

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L ++   +  +    + +  HTD+   R  A+ N +LS  RA SA   ++  
Sbjct: 549 IRDDAKPILNQLARTMRDNPGLRVELSSHTDS---RATAKYNMKLSQSRAQSAVDYIVSR 605

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ +R+    G+   +L          ++  + ANRR +I + D
Sbjct: 606 GIARNRLIA-KGYGESQLVNNCKDGVSCTEAQHQANRRTEIKILD 649


>gi|239628950|ref|ZP_04671981.1| chemotaxis motB protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519096|gb|EEQ58962.1| chemotaxis motB protein [Clostridiales bacterium 1_7_47FAA]
          Length = 277

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
             DL+  +  E N     +           + +  +A+ I +       D IV       
Sbjct: 65  PQDLKYPVIGENNEESTQVPTGSQNTQASAREMALMARDIQTYFDSENLDAIVSN----- 119

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASP 276
           +   + I     +N  +FD  S+    ++  +L  +G +L    + I    I GHT A  
Sbjct: 120 SENAVFIRF---KNDLLFDPDSASLRADSKSMLDAVGIMLKEKQDNILAVYINGHT-AQA 175

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
             ++  D   LS +RA +    L    G    ++    G+  +     +        NRR
Sbjct: 176 ANSLINDRL-LSSERADNVAIYLEDQVGFDPKKLI-CRGYGKYYPIADNATREGREQNRR 233

Query: 334 IDILVE 339
           +D+++ 
Sbjct: 234 VDMIIL 239



 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 11/213 (5%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81
                      W   YAD +T+++ FF++++ I+  +    + I               +
Sbjct: 2   KRQKDEEGGQEWLNTYADMITLVLTFFVLLYSISNVNISKLEEIASAM-----QRQLGIE 56

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
              D ++ P+   +  +    +E  T+     +    + ++      +   Y  +     
Sbjct: 57  AQTDIEDVPQ-DLKYPVIGENNEESTQVPTGSQNTQASAREMALMARDIQTYFDSENLDA 115

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
              NS      + K+         S+  +    L  +       M ++K+   LA  I+ 
Sbjct: 116 IVSNSENAVFIRFKNDLLFDPDSASLRADSKSMLDAVGI-----MLKEKQDNILAVYING 170

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
             +      I   +L       + I + DQ   
Sbjct: 171 HTAQAANSLINDRLLSSERADNVAIYLEDQVGF 203


>gi|126173969|ref|YP_001050118.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|153000261|ref|YP_001365942.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|160874894|ref|YP_001554210.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|217973710|ref|YP_002358461.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|304409838|ref|ZP_07391458.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307304194|ref|ZP_07583947.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|125997174|gb|ABN61249.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|151364879|gb|ABS07879.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|160860416|gb|ABX48950.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|217498845|gb|ACK47038.1| OmpA/MotB domain protein [Shewanella baltica OS223]
 gi|304352356|gb|EFM16754.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306913092|gb|EFN43515.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|315267131|gb|ADT93984.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 289

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D+  +     +   L ++ E LA+   V  + +  +TD+   R++   N ++S  RA S
Sbjct: 184 YDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
                + SG+ +DRI  + G    R   ++D M   + NRR+ I +
Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDMDERARNRRVVIRI 285


>gi|332288389|ref|YP_004419241.1| outer membrane protein A [Gallibacterium anatis UMN179]
 gi|330431285|gb|AEC16344.1| outer membrane protein A [Gallibacterium anatis UMN179]
          Length = 247

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD  S+   PE+  V++ +   L+ + + I I G+TD          N  LS  RA + 
Sbjct: 141 LFDFDSANLKPESQKVIEDLVNKLSKN-KQIWITGYTDRL---GSESYNLALSQRRAVAV 196

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
              ++  G+   RI  I  G A        +  ++       NRR+ I
Sbjct: 197 KNAMVALGIPASRIKAIGMGKADQVKACEKETGSALRQCLAPNRRVVI 244


>gi|187925345|ref|YP_001896987.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187716539|gb|ACD17763.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 266

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         L +   V         +++ G+TD +    +   N +LS  RA +
Sbjct: 163 FATDSAALSSVAKENLDRFMNV-NQGVNLHRVTVTGYTDKT---GLEAHNLKLSQARAAA 218

Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338
             Q L   G+  D+ +++  G A      A+    + NRR+D+ V
Sbjct: 219 VMQYLRDGGLHADQFVARGLGSADPVAPNATAEGRTQNRRVDVRV 263


>gi|153877197|ref|ZP_02004126.1| Outer membrane protein A [Beggiatoa sp. PS]
 gi|152066338|gb|EDN65873.1| Outer membrane protein A [Beggiatoa sp. PS]
          Length = 148

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVISIRGHTDASPFRNIARDNWR 286
           + N   F+   +    +   +L  +       +AH    I I GH D+SP  N  +   +
Sbjct: 39  EDNRITFEPGKATLTDQVKSILDTLAAKICLEIAHI-NAIVITGHADSSPTDNYKQ---K 94

Query: 287 LSLDRAYSAYQVLMKS--GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           LSL RA +    L      +++D++    G A      A    ++ NRR++I V  +
Sbjct: 95  LSLARAVAVADYLKSRCPALTDDKLI-TKGLADQYPLSAD---SAKNRRVEIRVMKK 147


>gi|26989809|ref|NP_745234.1| OmpA domain-containing protein [Pseudomonas putida KT2440]
 gi|24984708|gb|AAN68698.1|AE016499_3 OmpA domain protein [Pseudomonas putida KT2440]
          Length = 831

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 21/193 (10%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              +  + ++         +  +I     + R  D+ + + +      + N +  +  ++
Sbjct: 642 GKSMAAAGSEAGGNQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQS 701

Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274
            R    I  I   +  +F    +       E    L  I   L ++     I I GH D 
Sbjct: 702 LRA---IETITLESDTLFAFGRADFQSLKNEGQHQLSAIASKLLNTPNIGKIIISGHADQ 758

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330
                 ++ N ++S  RA +    L+  GV  + +    G    +  +  D         
Sbjct: 759 L---GDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRTQLI 814

Query: 331 -----NRRIDILV 338
                NRR++I V
Sbjct: 815 KCLEPNRRVEIEV 827


>gi|148547849|ref|YP_001267951.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148511907|gb|ABQ78767.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 831

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 21/193 (10%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              +  + ++         +  +I     + R  D+ + + +      + N +  +  ++
Sbjct: 642 GKSMAAAGSEAGGNQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQS 701

Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274
            R    I  I   +  +F    +       E    L  I   L ++     I I GH D 
Sbjct: 702 LRA---IETITLESDTLFAFGRADFQSLKNEGQHQLSAIASKLLNTPNIGKIIISGHADQ 758

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330
                 ++ N ++S  RA +    L+  GV  + +    G    +  +  D         
Sbjct: 759 L---GDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRTQLI 814

Query: 331 -----NRRIDILV 338
                NRR++I V
Sbjct: 815 KCLEPNRRVEIEV 827


>gi|119773836|ref|YP_926576.1| Outer membrane protein-related peptidoglycan-associated
           (lipo)protein [Shewanella amazonensis SB2B]
 gi|119766336|gb|ABL98906.1| Outer membrane protein-related peptidoglycan-associated
           (lipo)protein [Shewanella amazonensis SB2B]
          Length = 481

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD  S   LPE+  VL+ +   L         + GHTD    +     N  LSL R
Sbjct: 371 DGLLFDFDSDRMLPESQPVLEVLATYLKQHPAKGFYVVGHTDD---KGERAYNQSLSLRR 427

Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           A +  Q L  +  +   +++   G   +    +++  +  + NRR+++++  
Sbjct: 428 ADAVIQSLTQQYHIPASQLTA-HGNGEYSPVASNENESGQALNRRVELVLRS 478


>gi|255264472|ref|ZP_05343814.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62]
 gi|255106807|gb|EET49481.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62]
          Length = 227

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        VL++  + +         + GHTD          N +L L RA + 
Sbjct: 82  FPFNSNALDENARAVLRQQADWIRQFPEVRFKVYGHTD---LVGGTAYNRQLGLRRAQAV 138

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  ++ F   R  I ++     NRR
Sbjct: 139 VIYLTSQGISRSRLEAVASFGETRPVIQTNGQERRNRR 176


>gi|113969260|ref|YP_733053.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113883944|gb|ABI37996.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 485

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  +      + GHTD    +     N  LS  RA +
Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQNPTLSFYVVGHTDD---KGERSYNQSLSERRAAA 434

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +       +D     NRR+++++   +
Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484


>gi|254229410|ref|ZP_04922826.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262396871|ref|YP_003288724.1| outer membrane protein [Vibrio sp. Ex25]
 gi|151938101|gb|EDN56943.1| OmpA family protein [Vibrio sp. Ex25]
 gi|262340465|gb|ACY54259.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 205

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S++        +  +   L       I I+G+  AS        N  LS  RA +
Sbjct: 83  LFDNDSALINQIFKNKIDGLAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
              +L++ G+  DR+  I  F   +L         ++ NRR+   V  +QG
Sbjct: 140 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 189


>gi|46200841|ref|ZP_00207866.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 342

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   PE   VLQ+       +    I +  HTD       A+ N  LS  R  +
Sbjct: 240 FFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTD---LSGSAKYNQALSEKRGAA 296

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
               L + G+   +I  ++ G +   +          NRR++I++
Sbjct: 297 VKAQLEQLGIPASQIVVVAKGKSSPMVPTPDGVREPQNRRVEIVL 341


>gi|309781036|ref|ZP_07675774.1| outer membrane protein A [Ralstonia sp. 5_7_47FAA]
 gi|308920102|gb|EFP65761.1| outer membrane protein A [Ralstonia sp. 5_7_47FAA]
          Length = 218

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L      + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFDKAVLKPEGKAKLDDLISKLNGINLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +   +          NRR+D+ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVDVEVVGTR 215

Query: 342 QG 343
           + 
Sbjct: 216 KA 217


>gi|86131405|ref|ZP_01050003.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85817850|gb|EAQ39018.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 568

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N  ++D       P+    L ++ + +  +    + +  HTD+   R     N  LS +R
Sbjct: 456 NNILYDLDKYDIRPDARPELNRLAQFMKDNPGIRVEVSSHTDS---RASDSYNQTLSQNR 512

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           A +A   ++  GVS  +I+   G+   RL          S+  +  NRR ++ V
Sbjct: 513 ANAAVDYVVSQGVSRSKITG-KGYGESRLLNECADGVSCSETKHQINRRTEMKV 565


>gi|331006223|ref|ZP_08329545.1| Outer membrane protein [gamma proteobacterium IMCC1989]
 gi|330419980|gb|EGG94324.1| Outer membrane protein [gamma proteobacterium IMCC1989]
          Length = 338

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S       +  ++ +   +         I GHTD++     A  N  LS  R    
Sbjct: 224 FASNSDKVPSAYLPEIENLATFMQQYPTATAVIGGHTDST---GSAEYNQSLSQRRVNEV 280

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRID--ILVE 339
            ++L  + GV   R+S I G+   +    +D     + NRR++  I VE
Sbjct: 281 ARLLSANYGVDASRVSAI-GYGEAQPIAGNDTAVDRAKNRRVEASITVE 328


>gi|170697118|ref|ZP_02888213.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170137954|gb|EDT06187.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 171

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 45  ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLKSAGINGVRVY 101

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D      +A D   LS  RA      L+  G+   RI+ +  G +       +    
Sbjct: 102 GYSDDE--GEVAYD-LELSRRRAEVVAIELVDVGLDGKRIAVVGKGKSDPVGDNRTPTGR 158

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 159 AQNRRAAIVVSPR 171


>gi|83749098|ref|ZP_00946103.1| Outer membrane protein [Ralstonia solanacearum UW551]
 gi|83724219|gb|EAP71392.1| Outer membrane protein [Ralstonia solanacearum UW551]
          Length = 218

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + ++  PE    L  +   L + T  + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFNKAVLKPEGKAKLDDLVSKLKNITLKVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +   +          NRR+++ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215

Query: 342 QG 343
             
Sbjct: 216 SA 217


>gi|83954511|ref|ZP_00963222.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840795|gb|EAP79966.1| OmpA family protein [Sulfitobacter sp. NAS-14.1]
          Length = 234

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+        VL++    +         + GHTDA         N  L L RA S 
Sbjct: 90  FAFNSAQLDGAAQAVLRRQAGWIRQFPEVRFRVYGHTDAV---GSNSYNKALGLRRAQSV 146

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  F   +  I +     ANRR
Sbjct: 147 VGFLSTQGISRSRLEAVVSFGETQPLIVTQGRERANRR 184


>gi|262065804|ref|ZP_06025416.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
 gi|291380509|gb|EFE88027.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
          Length = 171

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S+  P+   +L  + + +  +   +++ GHTD+    +    N  
Sbjct: 58  TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIG 114

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           LS  RA +    L++ G++E+RI  I           ++       NRR++  +  R
Sbjct: 115 LSRRRAEAVKAKLIEFGLAEERIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 171


>gi|37704634|gb|AAR01589.1| OprF [Pseudomonas sp. MFY79]
          Length = 296

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 214 FDFDKSVVKPNSYADVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 270

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
            QVL+K G+   R+S + G+   R   
Sbjct: 271 KQVLVKDGIDAGRVSSV-GYGESRPVA 296


>gi|306820526|ref|ZP_07454159.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551440|gb|EFM39398.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 432

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +      +   VL K+ +VL  +  E   I GHTD+    +    N  LS +RA S
Sbjct: 329 LFDVNKYDIREDANDVLMKLIDVLKKAKVEKFEIYGHTDSD---DTDEYNQVLSENRANS 385

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
               L+K+G++ +      GF   +    +        NRR++I++
Sbjct: 386 VKDFLVKNGITAN--IATKGFGEKKPIATNSTKEGKQLNRRVEIII 429


>gi|24375456|ref|NP_719499.1| OmpA family protein [Shewanella oneidensis MR-1]
 gi|24350304|gb|AAN56943.1|AE015827_15 OmpA family protein [Shewanella oneidensis MR-1]
          Length = 228

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR+G  I I++  N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 105 VSVTRSGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 162

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N RLS  RA      LM  GV+  R+    G          A+    + NRR
Sbjct: 163 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAEGRAQNRR 219

Query: 334 IDILVED 340
           ++I++  
Sbjct: 220 VEIVLTP 226


>gi|228018095|gb|ACP52726.1| fibronectin-binding protein [Campylobacter coli]
          Length = 211

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRANSV 179

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 180 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 209


>gi|323491818|ref|ZP_08096993.1| OmpA family protein [Vibrio brasiliensis LMG 20546]
 gi|323313953|gb|EGA67042.1| OmpA family protein [Vibrio brasiliensis LMG 20546]
          Length = 188

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 11/147 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           + ++ + + S L    I  G+ +E      +++ + D      F+  SS   P++   L 
Sbjct: 43  MGQQRTQSYSDLQNFLISNGIDYELLPGNHVMVRLKDTIK---FNTGSSRVAPDSKYWLD 99

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            +G  LA      I I GH D++   +       LS+ RA +  Q L+ + V+ D I   
Sbjct: 100 MMGNYLATQPSIDIVIDGHADSTGAPSFNDS---LSMKRAKAVKQQLVNNRVAMDSIY-T 155

Query: 313 SGFAHHRLKIASDPMNSA--NRRIDIL 337
            G+  +    ++        NRR+++L
Sbjct: 156 RGYGEYVPACSNRTKAGKACNRRVEVL 182


>gi|222054709|ref|YP_002537071.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563998|gb|ACM19970.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 474

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +   P     + K+ E +         I GHTD +   +    N +LS +RA + 
Sbjct: 367 FETGRAEIQPRYHDEIAKVAEYMKRYPTTTALIEGHTDNTGTADF---NQKLSQERAENV 423

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS-ANRRI 334
              L++  G+   R+S     A  RL   +       NRRI
Sbjct: 424 VNYLVEKLGIERSRLSAKGYGASRRLAYNTTAEGRKKNRRI 464



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   E    + ++GE +    +    I GHTD          N  LS  RA S 
Sbjct: 243 FDIDKALIRAEDHREIARVGEFMQRYPDTTAVIEGHTDNV---GTDEHNLDLSRRRAESV 299

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
              L+   G+   R+S  +G+        +        NRRID +++
Sbjct: 300 TNYLVDKFGIDRSRLSS-TGYGFKHPVADNGTEAGKQKNRRIDAIID 345


>gi|228018097|gb|ACP52727.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|228018085|gb|ACP52721.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|189466239|ref|ZP_03015024.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM
           17393]
 gi|189434503|gb|EDV03488.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM
           17393]
          Length = 224

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS     +   L+++ ++L       I+I GHTD          N ++S DRAY+
Sbjct: 112 LFGFNSSALSNTSKASLRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYT 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L   GVS  +  ++ G  +++         S NRR+DI
Sbjct: 169 VENYLQDCGVSPAQFKQVEGVGYNQ--YDDSMTASQNRRVDI 208


>gi|330947752|gb|EGH48208.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 102

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 246 PETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           P +  +L K+ + L  +   +  I G+TD++      +DN +LS DRA +   VLM  GV
Sbjct: 1   PPSRTIL-KVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRAQAVADVLMDLGV 56

Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343
            E RI  + G+       A+  +   + NRR++I+  D +G
Sbjct: 57  DEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 96


>gi|255321572|ref|ZP_05362730.1| putative chemotaxis protein MotB [Campylobacter showae RM3277]
 gi|255301428|gb|EET80687.1| putative chemotaxis protein MotB [Campylobacter showae RM3277]
          Length = 355

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 42/330 (12%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINAT------DDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
           W I YAD M  LM  F+ M II A              +++  +   K + ++   +  +
Sbjct: 15  W-ISYADLMAGLM--FVFMLIIGAVVVKYVLSQSDLAKLQKDLSEREKQIASSQSELVRK 71

Query: 87  QNPPERSSQNKIDLSID----EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +N  +    N      +      I +   ++  G   +K +   L        N    + 
Sbjct: 72  ENVIKEIFSNLDRAKSENKELADINRLVNEMLEGVKKEKNELTNLTQTYEINLNDAN-KT 130

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             +   R  + G+ L +  +    ++ +    +   +  +    K K +++D++   S+ 
Sbjct: 131 IADLQDRVLQLGQILAQKDEALNELSAKYGDEVSRYAALEEDFNKTKDKIKDISSLRSNV 190

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV---- 258
           +S L A  +   V  + +       ++    + +FD  S     E    L++I +     
Sbjct: 191 ISNLRA-KLGNKVSIDPSSG-----VVSLPESILFDTGSYELRDEAKARLKEILQTYFEA 244

Query: 259 ------LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI--- 309
                 +A   + I I GHT++         N  LS  RAYS     + S   + R+   
Sbjct: 245 ILNNEEIAKHIDRIVIEGHTNSI---GSYMYNLDLSQKRAYSVLD-FIYSWNKDKRLEHY 300

Query: 310 SKISGFAHHRLKIAS---DPMNSANRRIDI 336
              SG +   L + +   DP  S   RI+I
Sbjct: 301 LIASGRSFSDLVMKNGKEDPDASK--RIEI 328


>gi|152997425|ref|YP_001342260.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1]
 gi|150838349|gb|ABR72325.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1]
          Length = 272

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 10/218 (4%)

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
            N       +++ H      + S K  ++ +    E    +       P +   I     
Sbjct: 53  KNSGDEQRLKETLHGVFDAVQKSIKPINIGEPIVGEPKDIEVVETKPIPAAPPTIEESNS 112

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                 L++ + +  SGL A           T +   +S+ + ++  +F +       E 
Sbjct: 113 SAVYALLSQVVENQFSGLHASG-----QISVTESADWVSL-ELKSGLLFGQGEYDLTNEA 166

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307
           + +L  +  VL     VI + G+TD  P  +     NW LS  R+ S    L+  GV   
Sbjct: 167 VALLILVANVLKAHPSVILVEGNTDDLPVNSRRLISNWHLSSLRSSSVVDELVYRGVDP- 225

Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           ++    GF+    K+   +D     NRR+ + +  R+ 
Sbjct: 226 KMIAPIGFSSEHPKVRNTNDYARQQNRRVILRISKREA 263



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 18  KKKVAIDDTPNNLGS---WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           +++V    +P+       W + YADF+T+L AFF+ ++ ++  +   ++ +++  +    
Sbjct: 11  RRRVVTKSSPSGAQGRDRWILSYADFITLLFAFFVALYSLSLKNSGDEQRLKETLHGVFD 70

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
            +  + K I    N  E       D+ + E     +    I  +N    Y  L   +   
Sbjct: 71  AVQKSIKPI----NIGEPIVGEPKDIEVVETKPIPAAPPTIEESNSSAVYALLSQVVENQ 126

Query: 135 SNSQQSEH 142
            +   +  
Sbjct: 127 FSGLHASG 134


>gi|228018087|gb|ACP52722.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|228018083|gb|ACP52720.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018091|gb|ACP52724.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018093|gb|ACP52725.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018101|gb|ACP52729.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018103|gb|ACP52730.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018105|gb|ACP52731.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018107|gb|ACP52732.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018115|gb|ACP52736.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018117|gb|ACP52737.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018125|gb|ACP52741.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018127|gb|ACP52742.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018129|gb|ACP52743.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018131|gb|ACP52744.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018133|gb|ACP52745.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018135|gb|ACP52746.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|257125161|ref|YP_003163275.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049100|gb|ACV38284.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 366

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F     IP       L+ I  V+        I   GHTD++        N +LS+ RA +
Sbjct: 250 FKVDGRIPNEREAGDLRAIAGVINQFADGGSIDFVGHTDST---GSDAYNQKLSVARAQN 306

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             ++L + G+    IS   I+G         +D  +    NRR+++  ++
Sbjct: 307 VARLLREYGLKNT-ISYGTITGQGESNPADTNDTTDGRYNNRRVELFFQN 355


>gi|46202758|ref|ZP_00052660.2| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 382

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+   P+ +  L++     A      +S+ G+TD       A  N RLS  RA + 
Sbjct: 152 FDLGSAKLSPQALQTLKEAAAAQAQMHAPLVSVAGYTDTL---GAADANLRLSRQRADAV 208

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
              L+K GV+   I   +     +L +A   +   + NRR++I +
Sbjct: 209 TAELVKLGVNPA-IISENALGETKLAVATGDNKAEAKNRRVEITL 252



 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   SS      I  L+++         + +++ G TD +     A  N RLS +RA +
Sbjct: 286 FFLPGSSRLGSADIARLKQVVAAQKTLKPKTVTVVGFTDQT---GSAATNARLSNERAQA 342

Query: 295 AYQVLMKSGVS----EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               + K G S    E R  ++ G A           +   RR++IL
Sbjct: 343 VAAEIAKLGGSTTSVEARPGEVWGGA----------YDGRARRVEIL 379


>gi|162451691|ref|YP_001614058.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161162273|emb|CAN93578.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 632

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279
            G  I I +Q +   F     I L ++   L+ + +VL  + +   + I GHTD    R 
Sbjct: 387 RGDEIVITEQVH---FATDKDIILEDSNSTLEAVAQVLIDNPDIREVRIEGHTD---VRA 440

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNS--- 329
               N  LS  R  S    L+  GV   R+  + G+ H +            D ++    
Sbjct: 441 TDLYNMALSQRRVASVMAYLIAKGVESSRLQAV-GYGHTQPIYDDTGCQGPDDQLSPDCQ 499

Query: 330 ----ANRRIDILVED 340
                NRR+   +  
Sbjct: 500 FMTSKNRRVVFRILR 514


>gi|260425871|ref|ZP_05779850.1| OmpA family protein [Citreicella sp. SE45]
 gi|260420363|gb|EEX13614.1| OmpA family protein [Citreicella sp. SE45]
          Length = 203

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S    P+    +++       +     I GHTDA   R     N RLS +RA S  
Sbjct: 106 FATDSYAISPQGQARIREF--FRNATAFGFIITGHTDA---RASDAYNRRLSYNRANSVA 160

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           +V   +G    RI  + G+        +      + NRR++IL
Sbjct: 161 RVARSAG---ARIVDVRGYGESYPVATNSTAEGMARNRRVEIL 200


>gi|319954323|ref|YP_004165590.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319422983|gb|ADV50092.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 639

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           L+ I+ +  T  F+ +SS         L K+   +       + +  H+D+    +   +
Sbjct: 520 LVEIL-KLKTIFFNTNSSYLNANAYPELDKVVAYMKEFPNARVEVGSHSDSR--DSDRYN 576

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDI 336
            W LS  RA S    ++  G+SEDRI+  +G+    L          S+  ++ NRR + 
Sbjct: 577 LW-LSDRRAKSTVSYIVSMGISEDRITA-TGYGETLLVNKCINDAPCSEAEHALNRRSEF 634

Query: 337 LV 338
           +V
Sbjct: 635 IV 636


>gi|157737365|ref|YP_001490048.1| hypothetical protein Abu_1119 [Arcobacter butzleri RM4018]
 gi|157699219|gb|ABV67379.1| hypothetical outer membrane protein [Arcobacter butzleri RM4018]
          Length = 854

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+ +S++   ET   +      +L +      I GH    P  + A  N +LS  RA +
Sbjct: 748 LFENNSAVIKEETKGKVLSFARYLLDNKEFNTIIEGHASKDPTASAAH-NQKLSEQRAAA 806

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
              +L+ +GV   RI  I G  H+     +      + NRRID ++  +
Sbjct: 807 IKNLLISNGVEASRIQSI-GKGHNEPIADNSTAEGQALNRRIDAILIRK 854


>gi|228018109|gb|ACP52733.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018111|gb|ACP52734.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018113|gb|ACP52735.1| fibronectin-binding protein [Campylobacter coli]
          Length = 223

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 135 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 191

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 192 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 221


>gi|330752332|emb|CBL87286.1| protein with similarity to outer membrane OmpA family protein
           [uncultured Flavobacteria bacterium]
          Length = 292

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRG 270
           +  +       G++  + +      F  +++  LP++I  L+++ + +L H    + +RG
Sbjct: 165 LDSLSINEVEVGMVYQLKE----IFFIPATAQYLPKSIKELERLKQFLLNHEVLKVQVRG 220

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS- 329
           H    P +        LS  RA +  Q L+ +GV E+R+ +  G ++ +++ +S P  + 
Sbjct: 221 HV-NGPAQTKPEFYQELSDARAKAIKQFLVGNGVGEERVDE-KGMSNFQMRYSS-PKTAF 277

Query: 330 ---ANRRIDILV 338
               NRR++I++
Sbjct: 278 EAGENRRVEIII 289


>gi|85374663|ref|YP_458725.1| putative outer membrane lipoprotein [Erythrobacter litoralis
           HTCC2594]
 gi|84787746|gb|ABC63928.1| putative outer membrane lipoprotein [Erythrobacter litoralis
           HTCC2594]
          Length = 242

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++SS+        +L ++   L      +I+I GHTD          N  LS  RA + 
Sbjct: 127 FEESSAALAAGGTELLDEVAAALRPCYGAIIAITGHTDT---SGDEPANIVLSRRRAAAV 183

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            + L+  GV E+ + +I+G    +     DP + ANRRI+  V  +Q
Sbjct: 184 ERALVARGVPEESL-RINGLGSSQPVQGLDPADPANRRIEFSVVAKQ 229


>gi|284032832|ref|YP_003382763.1| OmpA/MotB domain-containing protein [Kribbella flavida DSM 17836]
 gi|283812125|gb|ADB33964.1| OmpA/MotB domain protein [Kribbella flavida DSM 17836]
          Length = 327

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSL 289
            ++  +F   ++I   ++   + ++  +L    T  + + GHTD          +  LS 
Sbjct: 220 SQHKIIFLSGTAIVNEKSRGSVVRVAALLRTCGTARVELAGHTDNL---GDPSTSLPLSQ 276

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            RA +    L++ GV   RI    G+       ++        NRR++I V
Sbjct: 277 RRADAVKATLVRLGVPAGRIIS-RGYGEFEPVASNRTSAGRIANRRVEIRV 326


>gi|148546371|ref|YP_001266473.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148510429|gb|ABQ77289.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 313

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I + +        + + GH+D          N  LS  RA +
Sbjct: 179 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDN---SGNRLTNRDLSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
                  +GV E++I+ +           ++     + NRR++I ++ 
Sbjct: 236 VADYFKANGVPEEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 282


>gi|120600257|ref|YP_964831.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|146291813|ref|YP_001182237.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|120560350|gb|ABM26277.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145563503|gb|ABP74438.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
 gi|319425048|gb|ADV53122.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 228

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I I++  N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 105 VSVTRNGDNI-ILNMPNEVTFGVDQTELSDGASRVLNSVALVAKEYSKTQLNVLGYTDS- 162

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334
                   N RLS  RA      LM  G++  R+ SK  G A      AS    + NRR+
Sbjct: 163 --SGSDAYNLRLSQVRASEVANYLMSKGIAASRVKSKGMGKASPIASNASAEGRAQNRRV 220

Query: 335 DILVED 340
           +I++  
Sbjct: 221 EIVLTP 226


>gi|66047120|ref|YP_236961.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63257827|gb|AAY38923.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 300

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   GV E +I+ +             ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGVPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281


>gi|322379332|ref|ZP_08053708.1| flagellar motor protein MotB [Helicobacter suis HS1]
 gi|321148245|gb|EFX42769.1| flagellar motor protein MotB [Helicobacter suis HS1]
          Length = 258

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHS 262
           S +    I +G + E    G+++ +    ++ +F+ S            + +I +++   
Sbjct: 98  SQVSITKIGQGAILEQIAQGVVLKL---PSSLLFENSYDDTINATMREYIHRIAKIIHAL 154

Query: 263 TEVISI--RGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
            + I I  RG TD +P    +  RD++ L+  RAY   +VL+  G+   ++   + +  +
Sbjct: 155 PDQIRIDVRGFTDNTPLPSNSRFRDHYALAASRAYKVMKVLLSDGIDPQKL-SFTSYGKN 213

Query: 319 RLKIASDPMNSA--NRRIDIL 337
                ++ +     N R++I 
Sbjct: 214 DPIAPNNSLEERLHNNRVEIF 234



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +  K A          W + YADF+++L+A F+ ++ I+  +    KA+++ F       
Sbjct: 2   MAAKKAKPVECPAGERWAVPYADFLSLLLALFIALYAISVVNKSKVKALKKEFLKIFDYA 61

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP          +      +NS   ++  T   +  
Sbjct: 62  PRPDSMQPVITIPPAPGDTQTSMETESSKANENSNRSQVSITKIGQGA 109


>gi|312130253|ref|YP_003997593.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906799|gb|ADQ17240.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 657

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   +   P+  + L K+ ++L  +    I +  HTDA   R     N RLS  RA SA
Sbjct: 548 YDLDKADIRPDAAIELDKLVQILKDNPGLKIELGSHTDA---RASEIYNLRLSQRRAESA 604

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRID---ILVEDRQ 342
              ++  G+S +R+    G+    L I +    +    NRR +   I +  +Q
Sbjct: 605 INYIVNKGISRERLEA-RGYGESELIIPNAKTEAEHQQNRRTEFKVIEINSKQ 656


>gi|207725377|ref|YP_002255773.1| outer membrane protein [Ralstonia solanacearum MolK2]
 gi|207743944|ref|YP_002260336.1| outer membrane protein [Ralstonia solanacearum IPO1609]
 gi|300704759|ref|YP_003746362.1| outer membrane protein, ompa domain [Ralstonia solanacearum
           CFBP2957]
 gi|206590613|emb|CAQ37575.1| outer membrane protein [Ralstonia solanacearum MolK2]
 gi|206595346|emb|CAQ62273.1| outer membrane protein [Ralstonia solanacearum IPO1609]
 gi|299072423|emb|CBJ43768.1| putative outer membrane protein, ompA domain [Ralstonia
           solanacearum CFBP2957]
          Length = 218

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L + T  + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLKNITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +   +          NRR+++ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215

Query: 342 QG 343
             
Sbjct: 216 SA 217


>gi|327479764|gb|AEA83074.1| outer membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 297

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  S           L  I + L        I + GH+D S  R +   N  LS  RA +
Sbjct: 178 FPSSDVALDALGRAKLDIILQYLRADPSVNRIQLDGHSDNSGNRLV---NRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
             + L+ +GV E +I+ +         +A+  +   + NRR+ 
Sbjct: 235 VQEYLIANGVPEQQIT-VRFHGERYPLVANSSEANRAKNRRVT 276


>gi|256424251|ref|YP_003124904.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256039159|gb|ACU62703.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 613

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 230 DQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           D   + +    FD + +   P    VL  + + +  + +  + +  HTD+   R     N
Sbjct: 494 DPDKSGLLDIYFDFNKAAINPAAAQVLDGLVKTIQENPDKSVELSAHTDS---RGNDAFN 550

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337
             LS  RA S    L+  GV++ RIS   G+   +L          S+  +  NRR +  
Sbjct: 551 LALSQKRATSVMNYLISKGVAKSRISA-KGYGETKLLNRCGNGVNCSEDEHKLNRRTEFK 609

Query: 338 VEDR 341
           +  +
Sbjct: 610 LVKK 613


>gi|78061495|ref|YP_371403.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77969380|gb|ABB10759.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 169

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T+ G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 43  ALKSAGFQETQQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 99

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D      + + +  LS  RA      L+  G+   RI+ +  G +       +    
Sbjct: 100 GYSDQE---GVDKYDLELSRRRAEVVALELVDVGLDTKRIAIVGKGKSDPVGDNKTPGGR 156

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 157 AQNRRAAIVVSPR 169


>gi|300692122|ref|YP_003753117.1| outer membrane protein, ompA domain [Ralstonia solanacearum PSI07]
 gi|299079182|emb|CBJ51850.1| putative outer membrane protein, ompA domain [Ralstonia
           solanacearum PSI07]
          Length = 218

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L + T  + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLKNITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +              NRR+++ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGSRKAQIACQQPNRRVEVEVVGTR 215

Query: 342 QG 343
             
Sbjct: 216 SA 217


>gi|148264196|ref|YP_001230902.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146397696|gb|ABQ26329.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 520

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           MF+        E    L ++ E          + I GHTD+    ++   N  LS+ RA 
Sbjct: 410 MFEFGQIELSNEVKKALSEVAEQARTDKTWLYLRIDGHTDS--IGSVGY-NMDLSIKRAI 466

Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           +    L+ K G+   R+  + G    +L   +   +    NRR ++L    +G
Sbjct: 467 AIASYLIIKEGIDPTRVF-VKGMGKSKLIADNSTTDGRRMNRRFEVLFLVPKG 518


>gi|330980557|gb|EGH78660.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 830

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L ++     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|127512023|ref|YP_001093220.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126637318|gb|ABO22961.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 367

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S++    +   ++K+   +  +    + I GH  AS   N    N  LS  RA + 
Sbjct: 256 FANNSAVVNSASYGQIEKLANYMNQNPRATVLIGGH--ASNVGNPDY-NMDLSERRANAV 312

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            ++L+   G+S+DR+S   G+   +  I   S   N ANRRI+
Sbjct: 313 AELLVSKYGISQDRVSA-KGYGITQPLIEGKSAEANKANRRIE 354


>gi|34763974|ref|ZP_00144866.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886249|gb|EAA23533.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 172

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD    +   +    L  + + L  + +  I I G+TD
Sbjct: 47  EEGVTIRREGNNLILSMPELILFDFDKYVVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 106

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 107 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 162

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 163 RRVEFII 169


>gi|330901436|gb|EGH32855.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 830

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L ++     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|329900833|ref|ZP_08272601.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549361|gb|EGF33931.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 214

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+  P+    L  +   L      + I  GHTD+         N +LS+ R+ +    L
Sbjct: 112 KSVLKPDGKAKLDDLASKLQGMNLEVIIAVGHTDSV---GSDAYNQKLSVRRSEAVKAYL 168

Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           +  G+  +R+    G    +      S    + NRR++I V
Sbjct: 169 VSKGIEANRVY-TEGKGEKQPVADNKSAAGRAKNRRVEIEV 208


>gi|298291600|ref|YP_003693539.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
 gi|296928111|gb|ADH88920.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
          Length = 336

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE+   + ++  +L  +    + I GHTD          N  LS  RA + 
Sbjct: 229 FDFDKADIKPESEAQIAQLASLLKSNPQLGVLIVGHTDG---HGAFDYNLSLSQRRAQAV 285

Query: 296 YQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDIL 337
              L    G++ +R +   +G         ++   + NRR++I+
Sbjct: 286 ANRLTSQHGIAANRTTPAGAGMIAPVASNRTEEGRAKNRRVEIV 329


>gi|119477093|ref|ZP_01617329.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [marine gamma proteobacterium HTCC2143]
 gi|119449456|gb|EAW30694.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [marine gamma proteobacterium HTCC2143]
          Length = 363

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS         +  + E +       S I GHTD +     A  N  LS  RA + 
Sbjct: 256 FASDSSAVEGNYTSEISNVAEFMKKFAGATSVIEGHTDDT---GSAIYNETLSQKRANAV 312

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
             VL+   G+S +R+S   G+   R    +D      ANRR+  +++
Sbjct: 313 MNVLVNRFGISAERLSA-KGYGEARPIQDNDSVEGRRANRRVVAVIK 358


>gi|330940416|gb|EGH43516.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 830

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L ++     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|330807745|ref|YP_004352207.1| outer membrane protein OmpA [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375853|gb|AEA67203.1| putative lipoprotein; putative outer membrane protein, OmpA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 263

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 16/254 (6%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P   +      +       N    +      +      +       ++       +    
Sbjct: 9   PALLAACVALAACSHDPNANLEQARTNYNGLQADPAATKVAALETKDAADFLAKADKAYM 68

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           D E    + +   L     +     +   + E  L     +R + L    ++ +  L   
Sbjct: 69  DKEDEAKVDQLAYLTNQRVEVAKQTIALRNAEAELKNAGDERARALLDARNAQIKQLQDS 128

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
              K      T  G L++  D     +F  + S      +  + K+ + L  + +  + I
Sbjct: 129 LNAKQ-----TERGTLVTFGD----VLFATNKSDLRASGMTNVSKLAQFLQENPDRKVII 179

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326
            G+TD++        N  LS  RA S    L+K GV   RI    G+        +    
Sbjct: 180 EGYTDST---GSDSYNQSLSERRASSVQLALVKMGVDPARIV-TQGYGKEFPVADNTSVS 235

Query: 327 MNSANRRIDILVED 340
             + NRR+++ + +
Sbjct: 236 GRAMNRRVEVTISN 249


>gi|117919117|ref|YP_868309.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117611449|gb|ABK46903.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 230

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I +    N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 106 VSVTRDGDNIVLN-MPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N RLS  RA      LM  GV+  R+    G          A+    + NRR
Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220

Query: 334 IDILVED 340
           ++I++  
Sbjct: 221 VEIVLTP 227


>gi|332970903|gb|EGK09879.1| outer membrane protein OprF [Psychrobacter sp. 1501(2011)]
          Length = 315

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 101/303 (33%), Gaps = 22/303 (7%)

Query: 46  AFFLVMWIIN------ATDDDTKKAIEQ-YFNPFGKNLMTASKGIFDEQNPPERSSQNKI 98
           A  +VM  I+       + +   K +    +N  G              N         +
Sbjct: 13  AILVVMLAISPSTFAETSTEGLIKNMPNVEWNKLGNKPFQIISTNQILDNKVNLIFIRPL 72

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKDL 157
           D    E     ++D +   + Q   + ++       + S      K N L        + 
Sbjct: 73  DNDGPETSANIAIDGRFQVSLQPGHFSQVRYCSGNHNISIVPTGMKLNDLNTPYNHQVNF 132

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
               +   S++ +     P LSK   +   + + +     + +  +S +VA N  K +  
Sbjct: 133 AAQQNHYISVDIDNATGQPTLSK---IDEAQAQNILATQTEQTHQISRIVA-NCPKILEP 188

Query: 218 ETTRTGIL-ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           E     ++ + I    N   +F+   ++  P        +   +         I GHTD+
Sbjct: 189 EIEPEPVVKVEIGKPINLEVLFEFDKAVVQPVLNQRSMAVANFMNKYPNTSTIIEGHTDS 248

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
                 A  N +LS  RA +  Q L+ K GV+ +R+    GF   R    +        N
Sbjct: 249 I---GAANYNMKLSQQRAEAVKQELISKYGVNPNRLI-TQGFGETRPVDTNTTEKGRYNN 304

Query: 332 RRI 334
           RR+
Sbjct: 305 RRV 307


>gi|330811620|ref|YP_004356082.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379728|gb|AEA71078.1| Conserved hypothetical protein, putative lipoprotein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 244

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+         L  +   L   +   I I G+T
Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYT 158

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GVS   +S   G        ++      + 
Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGANLSA-RGAGPDNPVASNADVNGRAQ 214

Query: 331 NRRIDI 336
           NRR+++
Sbjct: 215 NRRVEV 220


>gi|170739237|ref|YP_001767892.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193511|gb|ACA15458.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 227

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+   P+ + +++ +G  LA          I GHTD    +   + N  LS  RA 
Sbjct: 116 FDYNSAKIGPKALPMVKSLGAALARQELKGNTFLIVGHTDG---KGKDQANQALSERRAQ 172

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +    ++++ GV    +  + G+   +LK A++P    NRR+ 
Sbjct: 173 AVKDYIVQNYGVPATNLVSV-GYGKTQLKDAANPNAPVNRRVT 214


>gi|153949846|ref|YP_001401475.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152961341|gb|ABS48802.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
          Length = 578

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  +  + A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVDALMNIRAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|270263877|ref|ZP_06192145.1| OmpA/MotB domain-containing protein [Serratia odorifera 4Rx13]
 gi|270042070|gb|EFA15166.1| OmpA/MotB domain-containing protein [Serratia odorifera 4Rx13]
          Length = 165

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   F+ T  G    + D     +F  +     PE+   +QK+G  L         + 
Sbjct: 40  LLQSQGFKLTDNGWEFGLSD---KVLFGNNIGKLNPESTETVQKMGRALMSVGITKFRLD 96

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMN 328
           GHTD          N +LSL RA +   +L   G+    I ++  G         +    
Sbjct: 97  GHTDNY---GEDSYNDQLSLRRANAVADLLASVGIPRANIETRGMGKRDPVADNRTSSGR 153

Query: 329 SANRRIDILVED 340
           + NRR+ I+V  
Sbjct: 154 AENRRVAIVVTP 165


>gi|241666858|ref|YP_002984942.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862315|gb|ACS59980.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 189

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
            L      G  L       + ++  +        +    A+     +++ A      L+G
Sbjct: 5   RLATMFAAGLLLAPGHPFAQELSGPQVVRTLDRLQGGAPAIDLALLMEEAAASAGKGLAG 64

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
           L     +  +      + +++ I        F+  S    P++   +  I + L H    
Sbjct: 65  LPDWQKLSKL------SQLIVEID-------FENDSIAIEPKSYRTVGMIADAL-HHPNL 110

Query: 265 ---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRL 320
                 + GHT ++     A+ N  LS  RA +  + L     ++ DR+  I G      
Sbjct: 111 RRYKFLVVGHTSST---GDAKHNLDLSQKRANAITEALSTTFSIAPDRLFAI-GVGEEWP 166

Query: 321 KIASDPMNSANRRIDIL 337
              S+P  + NRR+ ++
Sbjct: 167 GDPSNPQAADNRRVQLV 183


>gi|26987823|ref|NP_743248.1| OmpA family outer membrane protein [Pseudomonas putida KT2440]
 gi|24982522|gb|AAN66712.1|AE016299_8 outer membrane protein, OmpA family [Pseudomonas putida KT2440]
          Length = 317

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I + +        + + GH+D          N  LS  RA +
Sbjct: 183 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDN---SGNRLTNRDLSRRRALA 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
                  +GV E++I+ +           ++     + NRR++I ++ 
Sbjct: 240 VADYFKANGVPEEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 286


>gi|187477844|ref|YP_785868.1| outer membrane protein A [Bordetella avium 197N]
 gi|585615|sp|Q05146|OMPA_BORAV RecName: Full=Outer membrane protein A; Flags: Precursor
 gi|144052|gb|AAA22979.1| outer membrane protein A [Bordetella avium]
 gi|115422430|emb|CAJ48955.1| outer membrane protein A [Bordetella avium 197N]
          Length = 194

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  G+TD+      A  N +LS  RA S
Sbjct: 88  FFDFDKSTLKPEGRQLLDQVAQQARAIDLETIIAVGNTDS--IGTEAY-NMKLSERRAAS 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342
               L+  G+  +RI    G        ++      + NRR++I +V  R+
Sbjct: 145 VKAYLVSKGIDPNRIY-TEGKGKLNPIASNKTAEGRARNRRVEIEIVGSRK 194


>gi|320353100|ref|YP_004194439.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
            2032]
 gi|320121602|gb|ADW17148.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 1326

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   +++   E+   L  +   LAH  +  + + G+TD+       + N  LS  RA S 
Sbjct: 1223 FASGTAVFTQESRKNLDTVAAALAHVPQMRVEVAGYTDS---AGDPKKNLDLSAQRAQSV 1279

Query: 296  YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L   GV+  +++   G+        +        NRR+++
Sbjct: 1280 VDYLQTKGVARAQLTA-KGYGKENPIADNATAAGKQKNRRVEL 1321


>gi|312132093|ref|YP_003999433.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311908639|gb|ADQ19080.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 165

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIP--LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S      P+    L      L  +    + + GHTD          N  LSL+R  
Sbjct: 60  FQSASLEIIRTPQLEEWLSLAKNYLEENPGERLVLTGHTDNE---GTEESNLNLSLERGN 116

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
              ++L   G S + +  + G         +D       NRR+ I +  R
Sbjct: 117 RVKEILSAEGFSAESLE-VEGKGQSEPIAGNDTPEGMQKNRRVSIRLLKR 165


>gi|17545619|ref|NP_519021.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17427912|emb|CAD14602.1| putative outer membrane signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|299066867|emb|CBJ38062.1| putative outer membrane protein, ompA domain [Ralstonia
           solanacearum CMR15]
          Length = 218

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L   T  + I  GHTD+  F +   ++ RLS+ RA +
Sbjct: 102 LFDFDKAVLKPEGKSKLDDLVSKLKGITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341
               L+  G+  +R+    G    +LK+  DP +   +          NRR+++ +V  R
Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215

Query: 342 QG 343
             
Sbjct: 216 SA 217


>gi|189218838|ref|YP_001939479.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
 gi|189185696|gb|ACD82881.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
          Length = 342

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S+   P    +L ++ E+L       + I GHTD          N +LS  RA++
Sbjct: 233 LFDFDSATIKPNAEPLLFQVLEILKKYNRADVEIGGHTDTF---GDEMYNLQLSEQRAFA 289

Query: 295 AYQVLMK---SGVSEDRISKISGFAHHRLKIASDP-----MNSANRRIDILV 338
             Q L      G+        +G+      +  +P       + NRR++I++
Sbjct: 290 VQQWLEAHLPQGMYN---FHATGYGKSHPIV--NPRGSIEEQARNRRVEIVI 336


>gi|54307294|ref|YP_128314.1| putative OmpA family protein [Photobacterium profundum SS9]
 gi|46911714|emb|CAG18512.1| Putative OmpA family protein [Photobacterium profundum SS9]
          Length = 241

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +        ++      TR G  I +    N   F    S      +  L+ +  V    
Sbjct: 104 VQETKLRQQLESTGISVTRDGDNIVLN-MPNEITFGFDQSDLSSRAVAALKNVALVAKEY 162

Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  I++ G TD++     A  N RLS  RA      LM+ GV+ +R+    G       
Sbjct: 163 DKTLINVYGFTDST---GSASYNQRLSQVRASEVSSNLMRGGVAANRVI-TKGMGEANPI 218

Query: 322 IAS--DPMNSANRRIDILV 338
            ++  +   + NRR++I++
Sbjct: 219 ASNKTEQGRAENRRVEIVL 237


>gi|292490342|ref|YP_003525781.1| peptidoglycan-associated lipoprotein [Nitrosococcus halophilus Nc4]
 gi|291578937|gb|ADE13394.1| peptidoglycan-associated lipoprotein [Nitrosococcus halophilus Nc4]
          Length = 191

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS    +   +++  G+ LA   +V +++ GHTD    R     N  L   RA + 
Sbjct: 88  FEFDSSEIQEDDRPIVEAHGDYLAKHPDVSLTLEGHTDE---RGSREYNLALGERRANAV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
            ++++  G SED++ ++  +   R  +      +   NRR++IL
Sbjct: 145 RRLVLLMGASEDQV-QVVSYGEERPAVDGHDEGAWQLNRRVEIL 187


>gi|289676756|ref|ZP_06497646.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
 gi|330898576|gb|EGH29995.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330981564|gb|EGH79667.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 300

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +             ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281


>gi|90416365|ref|ZP_01224297.1| OmpA domain protein [marine gamma proteobacterium HTCC2207]
 gi|90332090|gb|EAS47304.1| OmpA domain protein [marine gamma proteobacterium HTCC2207]
          Length = 324

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +    L      L  I   +    +  + + GHTD+   R   + N  LS  RA + 
Sbjct: 215 FEFNKDTVLAVYGDQLDAIAAAMKAQDDIDLVLEGHTDS---RGADQYNMSLSDRRAKAV 271

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
              L++  G+   RIS + G+   +    +  D   + NRR+
Sbjct: 272 KAKLVEDYGIPAARISAV-GYGETQPIATNETDEGRARNRRV 312


>gi|123440951|ref|YP_001004940.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087912|emb|CAL10700.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 169

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            ++   F+ T  G +       N  +FD          +  +Q IG  L +     + + 
Sbjct: 43  ALQEQGFKLTDNGWV---FGLANKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTDA         N +LS  RA +    L   G+    I  + G         +     
Sbjct: 100 GHTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRTNIE-VRGRGKLEPVADNRTAKG 155

Query: 328 NSANRRIDILV 338
            + NRR+ I+V
Sbjct: 156 RAENRRVAIIV 166


>gi|21114987|gb|AAM42970.1| chemotaxis protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 89

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 268 IRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
           I G TD  P  +  R   DNW LS  RA +  + L+  GV    +   + F   +     
Sbjct: 2   ISGFTDDRPVLDSNRRYADNWELSAQRALTVTRALIAEGVPASSVFAAA-FGSQQPVDSN 60

Query: 323 ASDPMNSANRRIDI 336
           A +   + NRR++I
Sbjct: 61  ADETRRAKNRRVEI 74


>gi|229589734|ref|YP_002871853.1| hypothetical protein PFLU2242 [Pseudomonas fluorescens SBW25]
 gi|229361600|emb|CAY48478.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 295

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LP++   ++++ ++L   ++  ++I G+TD +        N  LS DRA + 
Sbjct: 193 FATDQTRILPDSQPQIEQLSQLLKQDASLKLAINGYTDRT---GDPAHNKTLSYDRAKAV 249

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
              +   G+   R+S    G A       ++   + NRR++++
Sbjct: 250 VAAITAKGIDAARLSAAGFGDADPVADNVTEAGKAQNRRVELV 292


>gi|224536108|ref|ZP_03676647.1| hypothetical protein BACCELL_00973 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522279|gb|EEF91384.1| hypothetical protein BACCELL_00973 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 667

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 34/138 (24%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               ++   +    E+ V L ++ E+L  +  V I +  H D   ++     N RLS  R
Sbjct: 530 ENIFYEFDKADLTSESTVALDELIELLNDNPNVTIELSAHCD---YKGNDDYNLRLSQRR 586

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI------ASDPM------------------ 327
           A S  + L+K G+  +R++   G+   + K        S P                   
Sbjct: 587 AESVVRYLIKGGIDPERLTP-KGYGEQQPKTVTKFTLKSAPFLKEGDVLTEEFIKNLPPE 645

Query: 328 -----NSANRRIDILVED 340
                N+ NRR +  V  
Sbjct: 646 QQEICNAINRRTEFKVLR 663


>gi|237742388|ref|ZP_04572869.1| outer membrane porin F [Fusobacterium sp. 4_1_13]
 gi|256845716|ref|ZP_05551174.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294785038|ref|ZP_06750326.1| outer membrane porin F [Fusobacterium sp. 3_1_27]
 gi|229430036|gb|EEO40248.1| outer membrane porin F [Fusobacterium sp. 4_1_13]
 gi|256719275|gb|EEU32830.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
 gi|294486752|gb|EFG34114.1| outer membrane porin F [Fusobacterium sp. 3_1_27]
          Length = 182

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD    +   +    L  + + L  + +  I I G+TD
Sbjct: 57  EEGVTIRREGNNLILSMPELILFDFDKYVVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 116

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 173 RRVEFII 179


>gi|115359182|ref|YP_776320.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115284470|gb|ABI89986.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 170

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 44  ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D        R    LS  RA      L+  G+   R++ I  G +       +    
Sbjct: 101 GYSDDEGTVAYDR---ELSRRRAEVVAIELVDVGLDGKRVAVIGKGKSDPVGDNRTPTGR 157

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 158 AQNRRAAIVVSPR 170


>gi|257483657|ref|ZP_05637698.1| OmpA domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331012188|gb|EGH92244.1| OmpA domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 830

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|237740757|ref|ZP_04571238.1| outer membrane porin F [Fusobacterium sp. 2_1_31]
 gi|229422774|gb|EEO37821.1| outer membrane porin F [Fusobacterium sp. 2_1_31]
          Length = 173

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 216 LFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           +    + G+ I       I+      +FD             L  + + L  + +  I I
Sbjct: 43  IIVFDQEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLATLAKALGENKDIHIKI 102

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            G+TD   F      N  LS+ RA +    L+  G     I  I G+          ++ 
Sbjct: 103 DGYTD---FIGTEAYNLELSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNKTEA 158

Query: 327 MNSANRRIDILV 338
             S NRR++ ++
Sbjct: 159 GRSRNRRVEFII 170


>gi|157960903|ref|YP_001500937.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157845903|gb|ABV86402.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 365

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+     +   ++++ E ++      ++I GH   +     A  N  LS  RA + 
Sbjct: 254 FATNSATVQESSYGDIKELAEYMSQHPNAEVTISGHASNT---GKADYNMALSERRAAAV 310

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            ++L+ + GV+  ++S   G+   +  I  +S   N ANRRI+
Sbjct: 311 AEILINEYGVASSKVSS-KGYGITQPLIEGSSAEANEANRRIE 352


>gi|325109023|ref|YP_004270091.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324969291|gb|ADY60069.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 242

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 11/202 (5%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           SL+   + G+       LE+      +  +  +  + +        +Q   ++    L  
Sbjct: 40  SLSEMKQDGEMRAMLDALEERFGSSAD-MVSGVPGKSLQENSFYSTMQSSGRRSEDGLKK 98

Query: 206 LVADN---IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              D+   + K    E    G ++++       +FD  S+         L  +  VL   
Sbjct: 99  RSKDSQGTVGKNETAERVNHGNVVTM---GGPALFDPFSATLNESIRENLDILAGVLKTR 155

Query: 263 TEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDR-ISKISGFAHH 318
           + +I +RGH      PF +   D + LS  RA +    L     + ++R I   +G    
Sbjct: 156 SNLICVRGHASPEPLPFDSPFADQFALSFARAEAVANYLIEDQKIPQERIIVSAAGDTEP 215

Query: 319 RLKIASDPMNSANRRIDILVED 340
           R+         +NRR+D+ + D
Sbjct: 216 RMLSRDAEQMGSNRRVDVFLID 237



 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD-TKKAIEQYFN---PFG 73
           KK+V  D+ P  +  W + Y D M++L+ FF+++  ++    D   +A+           
Sbjct: 5   KKQVVQDEPPPGVPEWVVTYGDMMSLLLTFFIMLVSLSEMKQDGEMRAMLDALEERFGSS 64

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            ++++   G   ++N    + Q+    S D  + K S D +      +   +    N+  
Sbjct: 65  ADMVSGVPGKSLQENSFYSTMQSSGRRSED-GLKKRSKDSQGTVGKNETAERVNHGNVVT 123

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS--------INKEENYFLPPLSKEKILA 185
           +      +    +L     +  D+       +S         + E   F  P + +  L+
Sbjct: 124 MGGPALFDPFSATLNESIRENLDILAGVLKTRSNLICVRGHASPEPLPFDSPFADQFALS 183

Query: 186 MKRKKRLQD 194
             R + + +
Sbjct: 184 FARAEAVAN 192


>gi|320326605|gb|EFW82655.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331074|gb|EFW87046.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 830

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIMIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|300771553|ref|ZP_07081428.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761542|gb|EFK58363.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 650

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L ++   +  +    I +  HTD+   R  AR N +LS +RA +A   ++  
Sbjct: 549 IREDAKPILNQLVRTMRDNPSLKIELSSHTDS---RATARYNMKLSQNRAQAAVDYIVSR 605

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ DRI    G+   +L          S+  + ANRR +I V +
Sbjct: 606 GIARDRIVA-KGYGESKLVNKCADGVQCSEAEHQANRRTEIKVLE 649


>gi|213964278|ref|ZP_03392508.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213953085|gb|EEB64437.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 949

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S    +    L  +   L       ++ + GH D    R     N  LS  RA +
Sbjct: 320 FDFDKSNIRSDAKNTLDGLLNFLCFNQHLNMV-LTGHADD---RGSLDYNQALSERRAQA 375

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
                +  G+  +RI KISG       +  +   +   NRR++I
Sbjct: 376 VKDFFIAGGLDPNRI-KISGEGEGNPAVKGNTEEAYQKNRRVEI 418


>gi|288940835|ref|YP_003443075.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288896207|gb|ADC62043.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 351

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGI----LISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +   LS  + + +V  +  +    G+     I++   +    FD   +    E+   L++
Sbjct: 212 VEEVLSQPMRERMVS-IEAKEMAQGLSDAGRIAVHGIQ----FDFDQATIKDESKPQLEQ 266

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI--S 310
           I  +L  + +  + I GHTD    R     N  LS  RA    + L++S G+  +R+   
Sbjct: 267 IALMLVENPDLKLYIVGHTDN---RGTLEYNMDLSRRRAEEVVRTLIQSYGILGERLKPM 323

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDIL 337
            ++G A        A++   + NRR++I+
Sbjct: 324 GVAGLA---PLTSNATEAGRALNRRVEIV 349


>gi|261211744|ref|ZP_05926031.1| outer membrane protein [Vibrio sp. RC341]
 gi|260839094|gb|EEX65726.1| outer membrane protein [Vibrio sp. RC341]
          Length = 212

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+  AS        N  LS 
Sbjct: 87  QQLHILFANDSSAIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRADY-NLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ G+   R++ I G+    L+     D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLIRDGIDPSRVN-IVGYGDSVLEAEGEDDISHARNRRVTATVVGYKG 198


>gi|260220860|emb|CBA28849.1| Outer membrane protein A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 203

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+   E    L  +   +      + I  GHTDA+        N +LS+ R+ +
Sbjct: 96  FFDFDKSVLKAEGKAKLDDLVSKVKAINLEVIIAVGHTDAT---GDDSYNQKLSVARSEA 152

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L+  G+ ++R+    G    +    +      + NRR++I V
Sbjct: 153 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 197


>gi|33593045|ref|NP_880689.1| putative lipoprotein [Bordetella pertussis Tohama I]
 gi|33563420|emb|CAE42299.1| putative lipoprotein [Bordetella pertussis Tohama I]
 gi|332382458|gb|AEE67305.1| putative lipoprotein [Bordetella pertussis CS]
          Length = 182

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271
           +GV     +  + I+++      +FD   +  L      L+ I E++   +T +++I GH
Sbjct: 70  EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLRDIAELIKSPATGIVAIEGH 126

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           TD+   +     N  LSL RA +  Q L   GV   ++  + G    R    +
Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPN 175


>gi|85858721|ref|YP_460923.1| peptidoglycan-associated lipopeptide [Syntrophus aciditrophicus SB]
 gi|85721812|gb|ABC76755.1| peptidoglycan-associated lipopeptide [Syntrophus aciditrophicus SB]
          Length = 210

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           ++K         +EK+   E      P    + LA  R+K L++ A K       L  + 
Sbjct: 26  AKKQVLQEGEAAVEKAAGAEVKPATEPGLTPEELA-AREKALKEQALKEQQERERLAGEK 84

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269
                            ++D      F+   S   PE+  +LQK    LA HS   + I 
Sbjct: 85  AAAEKAAAEAAARAGEVLVDIN----FEFDQSSLTPESREILQKHAAWLAAHSGYSLVIE 140

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327
           GH D          N  L   RA  A + L+  G+   RI  IS +        ++    
Sbjct: 141 GHCDDL---GTTEYNLALGERRAAEAMRFLVALGIDRSRIKTIS-YGEEMPLDPAETEEA 196

Query: 328 NSANRRIDILVEDR 341
            + NRR   +V  +
Sbjct: 197 RAKNRRAHFVVTPK 210


>gi|83592431|ref|YP_426183.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83575345|gb|ABC21896.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 161

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F        P+    LQ+  + L       +++ GH D    R     N  L   R
Sbjct: 56  DRVFFGYDQYNLAPDARATLQRQAQWLNQYGNFSLTVEGHADE---RGTREYNLALGERR 112

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S  + L+  GVS +R+ ++  +   R        +  + NRR
Sbjct: 113 ANSVREFLISQGVSANRL-RVVSYGKERPVCTETAESCYARNRR 155


>gi|307824145|ref|ZP_07654372.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307734929|gb|EFO05779.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 396

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I+D +    FD   S   P+    L     V+  +  V I ++GHT ++        N R
Sbjct: 288 IVDVK----FDNDKSNIKPQYYRELDNAVTVINQNPGVNIEVQGHTSST---GTVEYNQR 340

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
           LS  RA +    L        R     G+   +    ++     + NRR+ + V 
Sbjct: 341 LSERRALAVKNYLSSKSAHAGRTLTARGYGLTQPIDTNETEEGRANNRRVQLEVL 395


>gi|150010324|ref|YP_001305067.1| outer membrane protein OmpA family protein [Parabacteroides
           distasonis ATCC 8503]
 gi|255012413|ref|ZP_05284539.1| outer membrane protein OmpA family protein [Bacteroides sp. 2_1_7]
 gi|262382396|ref|ZP_06075533.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B]
 gi|149938748|gb|ABR45445.1| outer membrane protein OmpA family protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262295274|gb|EEY83205.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B]
          Length = 658

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 87/279 (31%), Gaps = 17/279 (6%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D     + S+      ++   I   + D  I   
Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWNVENLGAPINSMADDFGITFA 396

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            ++++     N              + ++T   E   +      +E +  +        +
Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232
                     +  L+ D+   + ++  G +  N       E      ++           
Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516

Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
             +   +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N RL+ 
Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            RA S    L+  G+   R+    G+     K  +  M 
Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611


>gi|71738017|ref|YP_272433.1| OmpA domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558570|gb|AAZ37781.1| OmpA domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 830

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVNCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|262173862|ref|ZP_06041539.1| protein F-related protein [Vibrio mimicus MB-451]
 gi|261891220|gb|EEY37207.1| protein F-related protein [Vibrio mimicus MB-451]
          Length = 207

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    ++   L ++ + LA  +   I + GHTD +      + N  LS  RA S 
Sbjct: 102 FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNT---GAQKFNDTLSEKRASSV 158

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++  V+++ I    G+  H     +   N    NRR+++
Sbjct: 159 KTALVQRQVAQNAIY-TRGYGEHVPACTNKTKNGRACNRRVEV 200


>gi|301308400|ref|ZP_07214354.1| OmpA family protein [Bacteroides sp. 20_3]
 gi|300833870|gb|EFK64486.1| OmpA family protein [Bacteroides sp. 20_3]
          Length = 658

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 87/279 (31%), Gaps = 17/279 (6%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D     + S+      ++   I   + D  I   
Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWKVENLGAPINSMADDFGITFA 396

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            ++++     N              + ++T   E   +      +E +  +        +
Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232
                     +  L+ D+   + ++  G +  N       E      ++           
Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516

Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
             +   +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N RL+ 
Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            RA S    L+  G+   R+    G+     K  +  M 
Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611


>gi|157374990|ref|YP_001473590.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157317364|gb|ABV36462.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 297

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             +         + KI E LA+  EV  + I  +TD+   R+I   N ++S +RA S   
Sbjct: 195 GGAELTRYAKAQIAKIQEYLAYDPEVELVLIDAYTDSYGGRSI---NQKVSEERADSVKN 251

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             + +G++++RI  + G        ++D     S NRR+ I +
Sbjct: 252 FFLSAGITQERIHTV-GHGERHHVASNDTIDERSRNRRVVIRI 293


>gi|224539344|ref|ZP_03679883.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519039|gb|EEF88144.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 224

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS     +   L+++ ++L       I+I GHTD          N ++S DRAY+
Sbjct: 112 LFGFNSSTLSNTSKSSLRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYT 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDI 336
               L   GVS  +  K+ G  +++     D M++  NRR+DI
Sbjct: 169 VENYLQDCGVSPSQFKKVEGVGYNQ---YDDSMSASQNRRVDI 208


>gi|297560820|ref|YP_003679794.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845268|gb|ADH67288.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 477

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 28/283 (9%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           PFG   +      F+  +P E++  + +     E    + V                E  
Sbjct: 35  PFGTGALDRQHSAFNLVDPLEQAFYSPVRDESGETTIGSEVVPHW------VMDADYEYQ 88

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL--SKEKILAMKR 188
           + +    + +E     +     +   +    D E       +   P      + +    R
Sbjct: 89  VHFPPLPEDTERITLVVNGSFGEFTGI-PVIDGEPPAEPPGDSVDPSDINPGDTVAVPLR 147

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           +  +    +  +  L  ++ D         TT        I      +FD   +   PE 
Sbjct: 148 EAEMTSEPEDYARDLYSIIED--SSRTRTSTTDE----ETIGLHADVLFDFDEATLTPEA 201

Query: 249 IVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
             VL ++ +    + +     I + GHTD    R     N  LS  RA +   VL + G+
Sbjct: 202 EDVLAEVVQETRENADPSRPPIRVVGHTDG---RGSEDYNQDLSERRAQAVLDVLEE-GL 257

Query: 305 SEDRISKISGFAHHRLKI-----ASDPMNSANRRIDILVEDRQ 342
             +   +  G       +       +   + NRR++I  + RQ
Sbjct: 258 GTEYEYETEGRGAEEPLVEEGGADDEEARATNRRVEISYKIRQ 300


>gi|260429336|ref|ZP_05783313.1| OmpA domain protein [Citreicella sp. SE45]
 gi|260419959|gb|EEX13212.1| OmpA domain protein [Citreicella sp. SE45]
          Length = 304

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     T+  L+++   L       + + GHTDA         N  LS  RA +A
Sbjct: 200 FETGSASLGETTVSSLEELAAFLTADPSRRVLLVGHTDAV---GSLAANTELSRKRAAAA 256

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
              L   G+   ++ ++ +G+        +      NRRI+ ++   +
Sbjct: 257 ESYLRARGIPAGQLGAQGAGYLSPVASNLTPEGREENRRIEAILLPSE 304


>gi|327403146|ref|YP_004343984.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327318654|gb|AEA43146.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 249

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 17/105 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGH---TDASPFRNIARDNWRLSLDRA 292
           F+ ++++   E+I  L+K+  +L   ++  + + GH   T A            LS  RA
Sbjct: 149 FENANAVVKAESIPNLEKLNRILLEDTSLFVRLNGHVCCTSAQ----------ELSFQRA 198

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            +    L+K G+ + RI    GF++ +L +  +     + NRR++
Sbjct: 199 NTVMTYLLKHGIPQSRIYA-EGFSNTQLLVPDNSEENMAINRRVE 242


>gi|322380701|ref|ZP_08054840.1| flagellar motor protein MotB [Helicobacter suis HS5]
 gi|321146869|gb|EFX41630.1| flagellar motor protein MotB [Helicobacter suis HS5]
          Length = 258

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHS 262
           S +    I +G + E    G+++ +    ++ +F+ S            + +I +++   
Sbjct: 98  SQVSITKIGQGAILEQIAQGVVLKL---PSSLLFENSYDDTINATMREYIHRIAKIIHAL 154

Query: 263 TEVISI--RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
            + I I  RG TD +P  + +R  D++ L+  RAY   +VL+  G+   ++   + +  +
Sbjct: 155 PDQIRIDVRGFTDNTPLPSNSRFKDHYALAASRAYKVMKVLLSDGIDPQKL-SFTSYGKN 213

Query: 319 RLKIASDPMNSA--NRRIDIL 337
                ++ +     N R++I 
Sbjct: 214 DPIAPNNSLEERLHNNRVEIF 234



 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +  K A          W + YADF+++L+A F+ ++ I+  +    KA+++ F       
Sbjct: 2   MAAKKAKPVECPAGERWAVPYADFLSLLLALFIALYAISVVNKSKVKALKKEFLKIFDYA 61

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP          +      +NS   ++  T   +  
Sbjct: 62  PRPDSMQPVITIPPAPGDTQTSMETESSKANENSNRSQVSITKIGQGA 109


>gi|313500575|gb|ADR61941.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 162

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           D     +F         ++  ++++IG+ L     + + + GH D+      A  N +LS
Sbjct: 52  DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 108

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA S  + L+  G+    I    G    +    +        NRR+ I+V
Sbjct: 109 ERRAQSVTKALVGVGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 159


>gi|325269973|ref|ZP_08136582.1| OmpA family protein [Prevotella multiformis DSM 16608]
 gi|324987696|gb|EGC19670.1| OmpA family protein [Prevotella multiformis DSM 16608]
          Length = 697

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 34/138 (24%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +   PE+   L ++ ++L  +  V I +  HTD   +   A  N RLS  R
Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLDENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL-----------------------------KI 322
           A +    L   G++ DR++ + G+   R                              K 
Sbjct: 586 ADAVVAYLTAHGIARDRLTPV-GYGKERPKKIRKKLTEKYPWLKENDVLTEDFIRKLDKE 644

Query: 323 ASDPMNSANRRIDILVED 340
             +  N  NRR +  V  
Sbjct: 645 KQETANQLNRRTEFTVLR 662


>gi|172064633|ref|YP_001812283.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171998118|gb|ACB69034.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 248

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKI-----GEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
              +F    +   PE    L  +     G   +     ++I G+TDA+       D   L
Sbjct: 141 GDALFAPGQATLTPEARKSLNALMEQQQGTFFS----RVTIIGYTDAT-GSAALNDV--L 193

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           S  RA +    L   G+  D + ++ G    +   +++     + NRR++I +  +
Sbjct: 194 SQRRAQAVASYLRTRGLKYD-VIEVEGRGSAQSVASNETAQGRAKNRRVEIQLVAK 248


>gi|114799688|ref|YP_760523.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114739862|gb|ABI77987.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 378

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S I    +  VL       +     + + GHTD +   N   ++ +LSL RA +  
Sbjct: 274 FAPGSVILNVASGPVLDLAARAASDCPGTLRVEGHTDDT--GNPGYND-QLSLRRAEAVR 330

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
             +++ GV  DR+   +G+  +    +++  +
Sbjct: 331 AAMIERGVPPDRLVA-AGYGQNNPVSSNETED 361


>gi|159045641|ref|YP_001534435.1| OmpA domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157913401|gb|ABV94834.1| OmpA domain protein [Dinoroseobacter shibae DFL 12]
          Length = 617

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
            I  I       F+  SS    E   ++ +I +VL   +     I GHTD          
Sbjct: 487 RIDAIQAEGKITFEPGSSQIAAEAEAIMDRIAQVLVDCSHVEFEIAGHTDNQ---GREVM 543

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           N  LS  RA +    L +  +    +    G+        +       ANRRI 
Sbjct: 544 NLNLSQARADAVLAALSERRILTGNLVA-RGYGEAMPIADNSTAEGREANRRIS 596


>gi|56698451|ref|YP_168825.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680188|gb|AAV96854.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 637

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRL 287
           +   +   F+  S+         + +I ++L       + I+GHTD+         N +L
Sbjct: 491 VQANDKIAFEPGSATIAASASGTMDRIADLLQSCGPIRLEIQGHTDSQ---GREEMNQQL 547

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI-LVEDRQG 343
           S  RA S    L    V     + + G+   +    +  +    ANRRI+  L+   Q 
Sbjct: 548 SQARAQSVLNELRARRVLTASYAAV-GYGESQPIADNGTEDGREANRRIEFRLIRPEQA 605


>gi|160876689|ref|YP_001556005.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|160862211|gb|ABX50745.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|315268889|gb|ADT95742.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 485

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL  +   L         + GHTD    +     N  LS  RA +
Sbjct: 378 LFDYDSERMLPESKPVLDVLASYLKQHPALSFYVVGHTDD---KGERSYNQSLSERRAAA 434

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +       +D     NRR+++++   +
Sbjct: 435 VIKQLSDGFQIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484


>gi|148549735|ref|YP_001269837.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148513793|gb|ABQ80653.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 162

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288
           D     +F         ++  ++++IG+ L     + + + GH D+      A  N +LS
Sbjct: 52  DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 108

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             RA S  + L+  G+    I    G    +    +        NRR+ I+V
Sbjct: 109 ERRAQSVTKALVGIGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 159


>gi|332280324|ref|ZP_08392737.1| OmpA/MotB:SmpA/OmlA [Shigella sp. D9]
 gi|332102676|gb|EGJ06022.1| OmpA/MotB:SmpA/OmlA [Shigella sp. D9]
          Length = 245

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 226 ISIIDQRNTPMFD---KSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNI 280
           I      +  +F      +S    + +  L  +   L        I + GHTD       
Sbjct: 116 IQRYTLNSDTLFAFDKSGTSDMSQQGLADLDHLAMNLNSFEKINGIIVIGHTDRL---GS 172

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSA------N 331
              N  LS  RA +  Q L+  G+  ++I+ I G    +       ++   S       N
Sbjct: 173 EDYNLTLSRKRAETVRQYLIAKGLPAEKITSI-GMGKSQPVKKCKYNNDRASLIVCLQPN 231

Query: 332 RRIDILVE 339
           RR+++ V+
Sbjct: 232 RRVEVEVD 239


>gi|255034413|ref|YP_003085034.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254947169|gb|ACT91869.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 248

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265
             +N  +          I +   D R T  F +S S  LPE+   L+ +   L  ++   
Sbjct: 116 PIENSTERAREPVIEQNIPVLEDDIRATLHFPQSESDILPESGYELEILAGYLVRNAGSR 175

Query: 266 ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           I + GHTD    PF+N+      LS DR     + L+   +   RI +  GF        
Sbjct: 176 IELMGHTDDVGDPFKNLL-----LSFDRVDEVRKYLVSKHIETTRI-RGKGFGSDLPVAP 229

Query: 324 SD--PMNSANRRIDILVED 340
           +D       NRR++I +  
Sbjct: 230 NDCEANRRLNRRVEIRIVP 248


>gi|113968724|ref|YP_732517.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113883408|gb|ABI37460.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 202

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    +++I   L       ++I GHT  +        N  LS +RA +
Sbjct: 79  LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
              VL     +   R++ I G+   R  +     ++   NRR+
Sbjct: 136 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 177


>gi|332666217|ref|YP_004449005.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335031|gb|AEE52132.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 595

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P    V++++   L  ++   + + GHTD          N  LS  RA++ 
Sbjct: 490 FASGSSEFTPSARAVMEQLFNDLVIASNLKVEVHGHTDNI---GDPAANLSLSERRAFAI 546

Query: 296 YQVLM---KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
              L     +   E R+  I          ++D     + NRR++I+
Sbjct: 547 KTWLENKSANNFPEGRV-SIFSHGASNPVASNDTPAGRAKNRRVEII 592


>gi|313203569|ref|YP_004042226.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312442885|gb|ADQ79241.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + S     +   L K  ++L  +    I+I GHTD          N +LS +RA S
Sbjct: 114 LFQTNKSALNTASKDALTKFAKILVANPTMDITIMGHTDNQ---GSLDVNQKLSQERAQS 170

Query: 295 AYQVLMKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI 336
               L    V+  +  +I G  FA       +    +ANRR+++
Sbjct: 171 VANFLQTQSVTATQFKEIIGKNFAEPVADNKTAAGRAANRRVEV 214


>gi|120612058|ref|YP_971736.1| OmpA domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120590522|gb|ABM33962.1| OmpA domain protein [Acidovorax citrulli AAC00-1]
          Length = 181

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   ++++    +  S    + I GHTD    R     N  L   RA + 
Sbjct: 80  FDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDD---RGGREYNLALGQKRAEAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   GV E ++  +S F   +  +  +  ++   NRR+++
Sbjct: 137 RRALGLLGVPEAQMEAVS-FGKEKPAVQGNTEDAFSQNRRVEL 178


>gi|330892287|gb|EGH24948.1| OmpA domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 830

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSRQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|255261508|ref|ZP_05340850.1| OmpA family domain protein [Thalassiobium sp. R2A62]
 gi|255103843|gb|EET46517.1| OmpA family domain protein [Thalassiobium sp. R2A62]
          Length = 308

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
            + + D      F   SS         L  + E L+ +    I++ GHTD+         
Sbjct: 195 RVVLSDLA----FQVGSSNLGDAAFASLDLLAEYLSANPNKTIALVGHTDS---SGPLNG 247

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           N  LS  RA S    L +      R  +  G  +      +        NRR++++V   
Sbjct: 248 NIALSKRRASSVLDRLTRDYGIPRRQMEAEGMGYLSPLSTNLTQEGRDLNRRVEVIVTST 307

Query: 342 Q 342
           +
Sbjct: 308 E 308


>gi|254228178|ref|ZP_04921607.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262394011|ref|YP_003285865.1| chemotaxis protein MotB-like protein [Vibrio sp. Ex25]
 gi|151939251|gb|EDN58080.1| Flagellar motor protein [Vibrio sp. Ex25]
 gi|262337605|gb|ACY51400.1| chemotaxis protein MotB-related protein [Vibrio sp. Ex25]
          Length = 244

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234
            L ++  ++  D+   I       +A  NI+  V  E  +  +++ I D         +T
Sbjct: 40  ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99

Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283
             F    SSIP   T    ++ IG VL  + +          + I GHTD+       + 
Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTVFIEGHTDSDSIHYRGKG 159

Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329
           NW LS DRA S + V           G  E+    ++  +SG+A  R   L+ ++    S
Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKS 219

Query: 330 ANRRIDI 336
            NRRIDI
Sbjct: 220 QNRRIDI 226


>gi|256839169|ref|ZP_05544679.1| outer membrane protein OmpA family protein [Parabacteroides sp.
           D13]
 gi|256740088|gb|EEU53412.1| outer membrane protein OmpA family protein [Parabacteroides sp.
           D13]
          Length = 658

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 17/272 (6%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D     + S+      ++   I   + D  I   
Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWKVENLGAPINSMADDFGITFA 396

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            ++++     N              + ++T   E   +      +E +  +        +
Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232
                     +  L+ D+   + ++  G +  N       E      ++           
Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516

Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
             +   +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N RL+ 
Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            RA S    L+  G+   R+    G+     K
Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPK 604


>gi|218262635|ref|ZP_03477017.1| hypothetical protein PRABACTJOHN_02696 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223264|gb|EEC95914.1| hypothetical protein PRABACTJOHN_02696 [Parabacteroides johnsonii
           DSM 18315]
          Length = 663

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 87/285 (30%), Gaps = 24/285 (8%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D       S+      ++   I     D  I   
Sbjct: 346 PYVRDSVTLYFASDGHPGMGG----LDIFKATLDSTGKWNVENMKAPINSAGDDFGITFA 401

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
             K+      N                 +T   E    +    D     +          
Sbjct: 402 GNKESGFFSSNRNDARGYDHLYSFELPVITIFIE---GIVSDVDENPIEDATVRIVGRDG 458

Query: 179 SKEKILAMKRKKRLQDLAKKI----SSTLSGLVADNIVKGVLFETTRTGILISIIDQR-- 232
             EK+LA K  K   +L + I     ++  G +  N       E      ++        
Sbjct: 459 LNEKVLAKKDGKYRVELERDIRYVMMASARGYLNQNFELKTGPEEKNETYIVDFFLSPIS 518

Query: 233 -----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
                    +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N R
Sbjct: 519 KPVVIENIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGSEQYNER 575

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           L+  RA S    L+  G+++DR+    G+     K  +  M + N
Sbjct: 576 LAQRRAQSVVDYLIAGGIAQDRLEA-KGYGESVPKTINKKM-AKN 618


>gi|319424730|gb|ADV52804.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 480

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  +      + GHTD    +     N  LS  RA +
Sbjct: 373 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 429

Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +      A+D     NRR+++++   +
Sbjct: 430 VIKQLNEAFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 479


>gi|329849879|ref|ZP_08264725.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19]
 gi|328841790|gb|EGF91360.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19]
          Length = 268

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 243 IPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
              P+    ++++  VL        ++I G+TD          N  LS  RA  A   L 
Sbjct: 169 ELTPQGERTMREVHRVLKRCPAEVKLTITGYTDNV---GADEVNKSLSAGRAVDAMNALT 225

Query: 301 KSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDILV 338
            +G  +D+++ + +G A      A+      NRR+   +
Sbjct: 226 AAGWPDDKVTAVGAGSADPVASNATAAGRKKNRRVVFTL 264


>gi|298484732|ref|ZP_07002834.1| OmpA domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160765|gb|EFI01784.1| OmpA domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 830

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSRQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|228018099|gb|ACP52728.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|262198303|ref|YP_003269512.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081650|gb|ACY17619.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 170

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
           I+  +   F   S+   P     L+ +   L  + E  + I GH D       A  N  L
Sbjct: 59  IEPESRVFFALDSAELTPLAQSELEDVAAWLVDNEERELVIEGHADPQ---GAADYNQEL 115

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           S  RA + YQ L+  G+  +R+ +   F       A +   S NRR
Sbjct: 116 SEKRAIAVYQFLLDQGIPAERMER-RAFGESE---ADEAPYSINRR 157


>gi|254467376|ref|ZP_05080787.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206688284|gb|EDZ48766.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 634

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSL 289
                 F+  S+    ++   + +I E+L       + I+GHTD+         N  LS 
Sbjct: 493 SDGKITFEPGSATIAADSAGTMDRIAEILGRCGPVRLEIQGHTDSQ---GREAMNQNLSQ 549

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
            RA S    L    V         G+        +D      ANRRI+
Sbjct: 550 ARAQSVLNELRARRVVTS-TFAAKGYGESTPIAGNDTEEGREANRRIE 596


>gi|146291559|ref|YP_001181983.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145563249|gb|ABP74184.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 481

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  +      + GHTD    +     N  LS  RA +
Sbjct: 374 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 430

Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +      A+D     NRR+++++   +
Sbjct: 431 VIKQLNEAFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 480


>gi|237802142|ref|ZP_04590603.1| OmpA domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024999|gb|EGI05055.1| OmpA domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 830

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 96/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP---P 177
               +   +    LS +Q+ +     L            +    K+IN            
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTINTNAEPGSNQDYE 658

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
            +  +I     +    D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|163738350|ref|ZP_02145765.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
 gi|161388271|gb|EDQ12625.1| OmpA/MotB [Phaeobacter gallaeciensis BS107]
          Length = 169

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   P    VLQ     L  +   V++I GH D          N  L   R
Sbjct: 59  DRVLFAVDQSTLSPAAQSVLQGQARWLTANPDYVVTIEGHADEQ---GTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+ +R+ ++  F   R     +++   + NRR
Sbjct: 116 ANAAREYLLSQGVAGNRL-QVVSFGKERPLEICSNEACYTKNRR 158


>gi|163742233|ref|ZP_02149621.1| peptidoglycan-associated lipoprotein [Phaeobacter gallaeciensis
           2.10]
 gi|161384563|gb|EDQ08944.1| peptidoglycan-associated lipoprotein [Phaeobacter gallaeciensis
           2.10]
          Length = 169

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   P    VLQ     L  +   V++I GH D          N  L   R
Sbjct: 59  DRVLFAVDQSTLSPAAQSVLQGQARWLTANPDYVVTIEGHADEQ---GTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+ +R+ ++  F   R     +++   + NRR
Sbjct: 116 ANAAREYLLSQGVAGNRL-QVVSFGKERPLEICSNEACYTKNRR 158


>gi|326563483|gb|EGE13746.1| OmpA family protein [Moraxella catarrhalis 103P14B1]
 gi|326572976|gb|EGE22955.1| OmpA family protein [Moraxella catarrhalis CO72]
 gi|326573791|gb|EGE23748.1| OmpA family protein [Moraxella catarrhalis 101P30B1]
          Length = 551

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +     D+ K +   +N      + E    +     + D  +  ++ ++ +   + V+  
Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             +     +   II+      F   S+    E   +L    E L    E  + I GHTD 
Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333
                    N  LS  RA +  + L+  GV+ +R+ ++ + F +     A++     NRR
Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523

Query: 334 IDILV 338
           I+ ++
Sbjct: 524 IEFVL 528


>gi|296113686|ref|YP_003627624.1| OmpA family protein [Moraxella catarrhalis RH4]
 gi|295921380|gb|ADG61731.1| OmpA family protein [Moraxella catarrhalis RH4]
          Length = 551

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +     D+ K +   +N      + E    +     + D  +  ++ ++ +   + V+  
Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             +     +   II+      F   S+    E   +L    E L    E  + I GHTD 
Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333
                    N  LS  RA +  + L+  GV+ +R+ ++ + F +     A++     NRR
Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523

Query: 334 IDILV 338
           I+ ++
Sbjct: 524 IEFVL 528


>gi|167033774|ref|YP_001669005.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166860262|gb|ABY98669.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 831

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 21/175 (12%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
            +  +I     + R  D+ + + +      + N +  +  ++ R+   I  I   +  +F
Sbjct: 660 YASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQSLRS---IETITLESDTLF 716

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L ++     + I GH D       ++ N ++S  RA
Sbjct: 717 AFGRADFQSLKNEGQNQLSAIASKLLNTPNIGKVVISGHADQL---GDSQGNLQVSKQRA 773

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +    G    +  +  D              NRR++I V
Sbjct: 774 QTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRAQLIKCLEPNRRVEIEV 827


>gi|157368917|ref|YP_001476906.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568]
 gi|157320681|gb|ABV39778.1| OmpA/MotB domain protein [Serratia proteamaculans 568]
          Length = 165

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   F+ T  G    + D     +F  +     PE+   +QK+G  L         + 
Sbjct: 40  LLQSQGFKLTDNGWEFGLSD---KVLFGNNIGKLNPESTDTVQKMGRALMSVGITQFRLD 96

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMN 328
           GHTD          N +LSL RA +   +L   G+    I ++  G         +    
Sbjct: 97  GHTDNY---GEDSYNDQLSLRRANAVADLLASVGIPRANIETRGMGKRDPVADNRTSSGR 153

Query: 329 SANRRIDILVED 340
           + NRR+ I+V  
Sbjct: 154 AENRRVAIVVTP 165


>gi|308449675|ref|XP_003088039.1| hypothetical protein CRE_17774 [Caenorhabditis remanei]
 gi|308250191|gb|EFO94143.1| hypothetical protein CRE_17774 [Caenorhabditis remanei]
          Length = 216

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +  KK+   + G        GV       G +  I+    +  FD + S   P     
Sbjct: 77  LDNKEKKLRQQMQGT-------GVEVNRNPDGSVALIM--PGSITFDTNKSTIKPNFYGT 127

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K+ + L   +  VI + G+TD +        N  LS +RAYS    L   GV   RI 
Sbjct: 128 LNKVAQTLMEDNKSVILVTGYTDNT---GNDSINIPLSQNRAYSVANYLKGKGV-ASRID 183

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338
              G+        +        NRR++I +
Sbjct: 184 -TQGYGSQNPIADNSTAAGREQNRRVEISI 212


>gi|117918835|ref|YP_868027.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117611167|gb|ABK46621.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 202

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    +++I   L       ++I GHT  +        N  LS +RA +
Sbjct: 79  LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
              VL     +   R++ I G+   R  +     ++   NRR+
Sbjct: 136 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 177


>gi|312132146|ref|YP_003999486.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311908692|gb|ADQ19133.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 805

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           D   +  +    + G ++ I        FD        +    L K+  ++       + 
Sbjct: 671 DAAKQQPVIYMFKEGDVVVI----ENIYFDYGKYYIRRDAREGLDKLVSLMREYPNMKVE 726

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---- 323
           +  HTD+   R+    N  LS +RA S  + L K G+S  RI    GF  ++L       
Sbjct: 727 LYSHTDS---RSSKEFNQTLSENRAKSTAEYLFKRGISRSRIVDYKGFGENQLVNGCADG 783

Query: 324 ---SDPMNSANRRIDILV 338
              S+  +  NRR +I V
Sbjct: 784 VKCSEAEHQLNRRTEIKV 801


>gi|326562428|gb|EGE12747.1| OmpA family protein [Moraxella catarrhalis 7169]
 gi|326562797|gb|EGE13092.1| OmpA family protein [Moraxella catarrhalis 46P47B1]
 gi|326569136|gb|EGE19198.1| OmpA family protein [Moraxella catarrhalis BC1]
 gi|326570622|gb|EGE20658.1| OmpA family protein [Moraxella catarrhalis BC7]
 gi|326574786|gb|EGE24720.1| OmpA family protein [Moraxella catarrhalis O35E]
          Length = 551

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +     D+ K +   +N      + E    +     + D  +  ++ ++ +   + V+  
Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             +     +   II+      F   S+    E   +L    E L    E  + I GHTD 
Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333
                    N  LS  RA +  + L+  GV+ +R+ ++ + F +     A++     NRR
Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523

Query: 334 IDILV 338
           I+ ++
Sbjct: 524 IEFVL 528


>gi|120599910|ref|YP_964484.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|146292153|ref|YP_001182577.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|120560003|gb|ABM25930.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145563843|gb|ABP74778.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
 gi|319425449|gb|ADV53523.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 366

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +   +  F   S++        ++++   L  + E  + I GH            N  LS
Sbjct: 248 EDVGSIQFANDSAVVKNVYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 304

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
             RA +   +L++  G+S  R++  +G+   +  +A D    ++ANRRI+ +V  
Sbjct: 305 DKRADAVANILVEKFGISRSRVTS-NGYGITQPLVAGDSKEAHAANRRIEAIVTT 358


>gi|258405704|ref|YP_003198446.1| peptidoglycan-associated lipoprotein [Desulfohalobium retbaense DSM
           5692]
 gi|257797931|gb|ACV68868.1| peptidoglycan-associated lipoprotein [Desulfohalobium retbaense DSM
           5692]
          Length = 199

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 45/210 (21%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKST--DLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + + +    + ++    + G D       D+E S+++E        +KE   A + +K 
Sbjct: 28  DTQAGEMGGTETTMQDSQDMGPDGTGQDGMDMETSVSEEPKDVDEWEAKESSGAAEEEKA 87

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +L ++I                                     FD  S    P+   V
Sbjct: 88  LSNLREEI------------------------------------YFDFDSFELKPDARDV 111

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           LQ    +L  +    + I GH D    R     N  L   RA +AY+ L+  G+  +R+ 
Sbjct: 112 LQDKAALLDDNPGYKMIIEGHCDE---RGTQEYNLALGERRARAAYEFLILLGIDANRL- 167

Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338
           +I  +   R  +  +++   + NRR +  +
Sbjct: 168 QIVSYGEERPAVEGSNEAAWAKNRRCEFKI 197


>gi|332293580|ref|YP_004432189.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171666|gb|AEE20921.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 368

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           + +S+   P    ++  ++  +LA +    + I  HTD+   R  +  N  LS  RA S 
Sbjct: 260 NTNSATLTPAAKSIIDTRLMPLLAQNPGVKLEIASHTDS---RGASSSNQDLSERRAQSV 316

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              L+  GV+   +   +GF   +LK         ++  ++ NRR +  + +
Sbjct: 317 ANYLISKGVNNS-LLVANGFGERKLKNRCADGVSCTERQHADNRRTEFRLIN 367


>gi|330949998|gb|EGH50258.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 300

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +             ++   + NRR+++ +E 
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281


>gi|312887218|ref|ZP_07746822.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311300530|gb|EFQ77595.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 177

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P  K K    K +  L ++ KK+             K V         ++   D   + +
Sbjct: 22  PACKSKKEIAKPQPPLVEVVKKVPEEKKPEPQVEAPKEVAP-------VVEKPDYNFSNL 74

Query: 237 -FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  S+I    +  +L K+   +   ++    + G++ A         N  LS +RA S
Sbjct: 75  QFEFDSAILKTSSYPMLDKVARAMKLDASVKFVLNGYSSAE---GTPEHNLLLSEERANS 131

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L+ +GV   +++   G+        +        NRR++I
Sbjct: 132 VKTYLLNAGVDASQLTA-KGYGDSNPITPNTTEEGRVLNRRVEI 174


>gi|256424721|ref|YP_003125374.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256039629|gb|ACU63173.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 677

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+    L K+  ++  +    + +  HTD+   R+    N +LS  RA S 
Sbjct: 569 FDLGKADIRPDVAKELDKLIALMKENANWKVDMSFHTDS---RSDDNYNMKLSQRRATST 625

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
               +  G+ + R++   G+   +L          ++  + ANRR +  V +
Sbjct: 626 LNYFLSKGIDKKRLTA-KGYGETKLINRCANGVNCTEEEHKANRRAEFTVLE 676


>gi|149277299|ref|ZP_01883441.1| OmpA/MotB [Pedobacter sp. BAL39]
 gi|149232176|gb|EDM37553.1| OmpA/MotB [Pedobacter sp. BAL39]
          Length = 464

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ +SS+   E+   L K+  VL  +   +++ G+  +      A  N +LS DRA S  
Sbjct: 364 FEFNSSVLKTESYPTLDKLSSVLRENGGKVTLHGYASSE---GTAAYNVKLSKDRANSVK 420

Query: 297 QVLMKSGVSEDRISKIS--GFAHHRLKIASDPMNSA--NRRID 335
             L+ SGV+    S +   G        ++D       NRR++
Sbjct: 421 TYLVNSGVNS---SAVVTKGHGEANPIASNDTEEGRIQNRRVE 460


>gi|85716801|ref|ZP_01047768.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85696408|gb|EAQ34299.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 214

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  S+   P T   L  +G+ L     +  VI + GHTD    +     N  LS  RA 
Sbjct: 103 FDFDSAAVTPRTEPQLHSLGKALTSDELAGSVIMLGGHTDG---KGSDAYNHNLSERRAE 159

Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L  +  +    +  + G+     K ++DP    NRR++++
Sbjct: 160 AVKRFLMERYKIPAANLVAV-GYGKEGYKNSADPFAPENRRVEVV 203


>gi|291567193|dbj|BAI89465.1| OmpA/MotB domain protein [Arthrospira platensis NIES-39]
          Length = 285

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
               L         A   ++RLQ + +++++  S    +          +R+G  + I+ 
Sbjct: 116 RTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGNGL-IMT 174

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             +  +F+  SS   P   V+L  +   L +    V+ + GHTD        + N  LS 
Sbjct: 175 LPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDD---SGSRQQNLVLSS 231

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLK--IASDPMNSANRRIDILVED 340
            +A +  Q L  + V +     ++ G+   R      SD     NRRI++ +  
Sbjct: 232 AQAEAIVQYL-SNAVDDQAYHWVAIGYGMTRPALENTSDINRQLNRRIEVAITP 284


>gi|153830883|ref|ZP_01983550.1| putative outer membrane protein [Vibrio cholerae 623-39]
 gi|148873634|gb|EDL71769.1| putative outer membrane protein [Vibrio cholerae 623-39]
          Length = 212

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L++    D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198


>gi|326316639|ref|YP_004234311.1| peptidoglycan-associated lipoprotein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373475|gb|ADX45744.1| peptidoglycan-associated lipoprotein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 181

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   ++++    +  S    + I GHTD    R     N  L   RA + 
Sbjct: 80  FDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDD---RGGREYNLALGQKRAEAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   GV + ++  +S F   +  +  +  ++   NRR+++
Sbjct: 137 RRALGLLGVPDGQMEAVS-FGKEKPAVQGNTEDAFSQNRRVEL 178


>gi|170728573|ref|YP_001762599.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169813920|gb|ACA88504.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 224

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++      TR+G  I I++  N   F    +        VL  +  V     +  +++ G
Sbjct: 96  LQSTGVSVTRSGDNI-ILNMPNEVTFGVDETHLSAGAKRVLNSVALVAKEYDKTRLNVLG 154

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TD+         N RLS  RA      L+   V   R+    G    R   ++      
Sbjct: 155 FTDS---SGSESYNLRLSKVRAVEVADYLVSQKVEYVRVKS-DGMGEERPIASNATKEGR 210

Query: 329 SANRRIDILV 338
           + NRR++I++
Sbjct: 211 AENRRVEIIL 220


>gi|54309669|ref|YP_130689.1| outer membrane protein [Photobacterium profundum SS9]
 gi|46914107|emb|CAG20887.1| conserved hypothetical outer membrane protein [Photobacterium
           profundum SS9]
          Length = 220

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
              F   S    PE+  VL+ I   L +S + +S+ GHTD+         N+ L L RA 
Sbjct: 118 RVYFAFDSQRLTPESQTVLKAIARKLTNSQQTVSLAGHTDSV---GSQGYNYTLGLQRAK 174

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           S+ Q L+ + V +  +   + +   +   ++      + NRR+D++
Sbjct: 175 SSMQYLIDNEVKDTNLKSKT-YGETQPIESNTTSQGRAMNRRVDVV 219


>gi|238794810|ref|ZP_04638412.1| OmpA family protein [Yersinia intermedia ATCC 29909]
 gi|238725890|gb|EEQ17442.1| OmpA family protein [Yersinia intermedia ATCC 29909]
          Length = 169

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD       P  +  +QKIG  LA+     + + GHTD+         N +LSL+R
Sbjct: 62  NKVLFDSDVRELNPSGVQRVQKIGRALANVGIHHMRVDGHTDSI---GEDGYNQQLSLER 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+    I  + G         +      + NRR+ ++V
Sbjct: 119 ASAVADALATIGIPRANID-VRGRGKLEPVADNHTPKGRAENRRVSMIV 166


>gi|206564091|ref|YP_002234854.1| putative OmpA/MotB family outer membrane protein [Burkholderia
           cenocepacia J2315]
 gi|198040131|emb|CAR56114.1| putative OmpA/MotB family outer membrane protein [Burkholderia
           cenocepacia J2315]
          Length = 169

 Score = 66.4 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            +K   F+ T  G            +FD       P+   ++++IG  L  +    + + 
Sbjct: 43  ALKSAGFQETGQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 99

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G++D       A D   LS  RA      L   G+   RI+ +  G +       +    
Sbjct: 100 GYSDDE--GTAAYD-LELSRRRAEVVAVELADVGLDAKRIAVVGRGKSDPVGDNKTPVGR 156

Query: 329 SANRRIDILVEDR 341
           + NRR  I+V  R
Sbjct: 157 AQNRRAAIVVSPR 169


>gi|326571329|gb|EGE21346.1| OmpA family protein [Moraxella catarrhalis BC8]
          Length = 551

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E   +L    E L    E  + I GHTD          N  LS  RA + 
Sbjct: 428 FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDTQ---GTHEYNQDLSESRAAAV 484

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
            + L+  GV+ +R+ ++ + F +     A++     NRRI+ ++
Sbjct: 485 KEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRRIEFVL 528


>gi|254507991|ref|ZP_05120119.1| outer membrane protein [Vibrio parahaemolyticus 16]
 gi|219549099|gb|EED26096.1| outer membrane protein [Vibrio parahaemolyticus 16]
          Length = 278

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++KRL +L  ++    S        D                +  +D +    F  +SS 
Sbjct: 111 QRKRLNELELQLDYVTSQTKCVPPMDEGAFHQRLAVIDELFNLLNVDNQ----FAFNSSE 166

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L K   +LA      + + GH D+    ++A  N +L+L+RA    + L   
Sbjct: 167 VNPKYMGHLAKAANMLAEHPSLNLKVTGHADS--VGDVAY-NEKLALERAQQVKRYLSIF 223

Query: 303 GVSEDRI--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           G++  RI    +            +       NRR+ I V D Q
Sbjct: 224 GLAPTRIATHSV---GDTLPLHEGNSEGVKLTNRRVSIEVIDTQ 264


>gi|332994178|gb|AEF04233.1| TolC family type I secretion outer membrane protein [Alteromonas
           sp. SN2]
          Length = 616

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS   PE +  L ++ + L       + I GH         A  N RLS  RA + 
Sbjct: 511 FASNSSKISPEYVSSLSQVIDALEKYDNAGVIIHGHAS---LDGDAAYNQRLSERRASAV 567

Query: 296 YQVLMK--SGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
             +L++  + +   RI+ + G+   R  +  +    N+ NRRI+
Sbjct: 568 AALLIESTNDIDSRRITSV-GYGETRPLVDEESPAANAKNRRIE 610


>gi|289647908|ref|ZP_06479251.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 656

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 394 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 450

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    +  ++ +    +               ++++L   +   L+ 
Sbjct: 451 KARIPDYWYPAIYKQVPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 508

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 509 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 568

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 569 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 624

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 625 PLVHCDMQMPRAELIHCLEPNRRVEIEV 652


>gi|329954289|ref|ZP_08295383.1| OmpA family protein [Bacteroides clarus YIT 12056]
 gi|328527995|gb|EGF54981.1| OmpA family protein [Bacteroides clarus YIT 12056]
          Length = 224

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS    +    L+ + ++L   +T  I+I GHTD          N ++S +RAY+
Sbjct: 112 LFAFNSSTLSNDAKASLRDLAKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               L   GVS  +  ++ G  ++          + NRR+ I 
Sbjct: 169 VENYLQDCGVSPSQFKQVEGVGYNE--YDESLSAAQNRRVVIF 209


>gi|305665788|ref|YP_003862075.1| OmpA family protein [Maribacter sp. HTCC2170]
 gi|88710554|gb|EAR02786.1| OmpA family protein [Maribacter sp. HTCC2170]
          Length = 827

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +    L K+ +V+      VI I  HTD+   R     N  LS  RA S 
Sbjct: 718 FDFDKSYIRKDASEELDKLVQVMTEYPTMVIKIESHTDS---RGARVYNKYLSEKRAKST 774

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              ++  G+  +RI    G+   RL          S+  +  NRR + ++ +
Sbjct: 775 RAYIISKGIDANRIQSAIGYGEERLINGCDGSVRCSEANHLLNRRSEFIIVE 826


>gi|320015664|gb|ADV99235.1| putative exported protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 578

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|194290119|ref|YP_002006026.1| outer membrane protein, ompa family [Cupriavidus taiwanensis LMG
           19424]
 gi|193223954|emb|CAQ69963.1| putative outer membrane protein, ompA family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 177

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   F  T  G  + + D     +F  +  +   +    + +IG  L+    E + + 
Sbjct: 51  VLQQEGFTLTGEGWELGLTD---KVLFGFNEDLIEGDRAANVLRIGRALSGVGIERLRVD 107

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           GHTD       A  N  LS+ RA +  ++L  +G + D I  + G    R    +     
Sbjct: 108 GHTDD---AGSAEYNQSLSVRRAEAVARLLADAGFTRDNIE-VRGLGKSRPVADNRTAAG 163

Query: 328 NSANRRIDILV 338
            + NRR+ I+V
Sbjct: 164 RAENRRVAIIV 174


>gi|284040044|ref|YP_003389974.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819337|gb|ADB41175.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 668

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 13/278 (4%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           + FG      +KG         +   +         +   ++     +   K     +  
Sbjct: 396 DDFGLIYTDPTKGFMASNRGGGKGDDDIYFFQEGPSVDSTTIVQTPPANAPKIVRYFIAG 455

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---KEENYFLPPLSKEKILAM 186
            +                  D   G+ + ++T  +         +      +  E+   +
Sbjct: 456 TVSANETPIVPLDSARVRILDDATGQPIAEATTGQPGTFGKYPLQEGKDYTILAERRGYL 515

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            R+++     K I +        +    V     R  +  + +       +D       P
Sbjct: 516 TRREQFTMQGKSIPAIFLTKAQTDTTFNVALLLDRATLNKTFV--LENIYYDLDKFNIRP 573

Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           +    L K+  +L  +    I +  HTD    R     N RLS +RA SA   ++  GV 
Sbjct: 574 DAAEELDKLVTILKDNPTLKIELSSHTD---VRAPDAYNMRLSQNRAKSAVDYIVSKGVD 630

Query: 306 EDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340
             R+    G+   +L + +   +  +  NRR +  + +
Sbjct: 631 ASRMIA-KGYGETQLIVKNAKTEEEHQRNRRTEFKILE 667


>gi|119952965|ref|YP_945174.1| outer membrane protein [Borrelia turicatae 91E135]
 gi|119861736|gb|AAX17504.1| outer membrane protein [Borrelia turicatae 91E135]
          Length = 385

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   +   ++   +  +  E    GI +S+ D      F   S   + +    L+ I  +
Sbjct: 249 IEHEVKEYISTKQIDSINIEKNENGIKLSL-DIE----FYPDSFQIIKKEYNKLKHIANL 303

Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I I GHT         +    LS  RA+S    L+K  V         G+  
Sbjct: 304 LEKFKDNNILIEGHTAKFGTEQEMQ---ELSEKRAHSIGNYLLKMKVKNKNQIFFKGWGA 360

Query: 318 HRLKIASD-PMNSANRRIDILVED 340
            + K A+  P+ S NRR++I + +
Sbjct: 361 KKPKYANSSPLASKNRRVEITILN 384


>gi|90414007|ref|ZP_01221991.1| hypothetical outer membrane protein OmpA [Photobacterium profundum
           3TCK]
 gi|90324929|gb|EAS41450.1| hypothetical outer membrane protein OmpA [Photobacterium profundum
           3TCK]
          Length = 327

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     + I  LQ I + L +  E  + + GHTD+   R     N  LS +RA   
Sbjct: 218 FAFDSDTLSQQDIDQLQPIAQRLVNFPETELFVIGHTDS---RGAEAYNQNLSEERAAVV 274

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
              L    G+ + RI +  G        A+D     + NRR+++ 
Sbjct: 275 AGYLATHFGIEQSRI-QAQGRGELEPVAANDTEDGRAQNRRVEVF 318


>gi|330502362|ref|YP_004379231.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916648|gb|AEB57479.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 313

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F        P     L  I + +          I GH D          N  LS  RA +
Sbjct: 183 FPGGGIDLDPMAKAKLDIILDFVKADPTINSFQIDGHADN---SGNRLTNRDLSRRRALA 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
             + L+  G+  ++I+           + ++     + NRR
Sbjct: 240 VQEYLVAGGIPVEQITM-RFHGERYPLVPNNNEANRAKNRR 279


>gi|254420406|ref|ZP_05034130.1| OmpA family protein [Brevundimonas sp. BAL3]
 gi|196186583|gb|EDX81559.1| OmpA family protein [Brevundimonas sp. BAL3]
          Length = 183

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284
            ++   ++  F   +S   PE    L +  + L    + +   I+G+TDA+    +  +N
Sbjct: 70  QVVLSDDSVKFPTDASALSPEAEQRLAQFAQRLRDENKNVYLEIQGYTDAT--GPVEHNN 127

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            +L   RA +  + L + GV+ +R+S IS +       ++D     S NRR+ I+V 
Sbjct: 128 -QLGEQRAEAVRRFLNRQGVALNRMSTIS-YGPEEPVASNDTPEGRSQNRRVTIVVL 182


>gi|332300756|ref|YP_004442677.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177819|gb|AEE13509.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 147

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNW 285
            +    N   F K  +    E  +VL  + + + +HS   + + GHT           N 
Sbjct: 39  ELEQNFNDVKFAKGKADLTREAQLVLCDLAKFMESHSGLKLKLEGHTSEE---GDETFNQ 95

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RLS  RA +A   L+  GVS +R+    G                NRR + +V
Sbjct: 96  RLSEARAQAAVDFLISQGVSAERLEA-EGKGSTDPIDPD--SLEVNRRTEFVV 145


>gi|330465991|ref|YP_004403734.1| OmpA/MotB domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328808962|gb|AEB43134.1| OmpA/MotB domain protein [Verrucosispora maris AB-18-032]
          Length = 407

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289
            +  +F   S    P     L +I E      +   + + GHTD+   R+ A  N  LS 
Sbjct: 292 PSAALFATDSDEIGPAGRNRLAEIAEE-NKLPKATHLEVVGHTDS---RDDADYNQDLSE 347

Query: 290 DRAYSAYQVLMKSGVSEDRISKISG------FAHHRLKIA-SDPMNSANRRIDILVEDRQ 342
            RA +  ++L + GV   + ++  G       A         D     NRR++I++  + 
Sbjct: 348 RRAAAVGRILRELGVPVSK-TRGRGEEVRLCLAERLPGGGWDDACLQRNRRVEIVISKQS 406

Query: 343 G 343
           G
Sbjct: 407 G 407


>gi|187918041|ref|YP_001883604.1| outer membrane protein [Borrelia hermsii DAH]
 gi|119860889|gb|AAX16684.1| outer membrane protein [Borrelia hermsii DAH]
          Length = 385

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   ++   +  +  E    GI +S+ D      F   S   + +    L+ I  +
Sbjct: 249 IENEVKEYISTKQIDSIKIEKNENGIKLSL-DIE----FYPDSFQIIQKEYSKLKHIANL 303

Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I I GHT         +    LS  RA+S    L+K  V         G+  
Sbjct: 304 LEKFKNNNILIEGHTAKFETEQAMQ---ELSEKRAHSIGNYLLKMKVKNKNQIFFKGWGA 360

Query: 318 HRLKIASD-PMNSANRRIDILVED 340
            + K AS  P+ S NRR++I + +
Sbjct: 361 KKPKYASSSPLASKNRRVEITILN 384


>gi|146306467|ref|YP_001186932.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574668|gb|ABP84200.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp]
          Length = 217

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            LP ++  + ++ ++L +     + + GH D+      A  N  LS  RA +   +   S
Sbjct: 85  LLPVSLGPITRVAKLLESDEDMAVVVLGHADS---SGDATRNRELSDQRARAVTSIFRLS 141

Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           G+ ++R+ ++ G      + A+D     + NRR++IL+  R
Sbjct: 142 GLKQNRL-QVMGLGSDMPRAANDSAAGRALNRRVEILLTSR 181


>gi|77460924|ref|YP_350431.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77384927|gb|ABA76440.1| putative OmpA family outer membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 237

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   S+         L  +   L   +   I I G+T
Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYT 158

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L   GVS   +S   G        ++      + 
Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGANLSA-RGAGPDNPIASNGDVNGRAQ 214

Query: 331 NRRIDI 336
           NRR+++
Sbjct: 215 NRRVEV 220


>gi|332877756|ref|ZP_08445497.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684336|gb|EGJ57192.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 648

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P+  V L KI EV+    +  I IR HTD+   R     N +LS  RA + 
Sbjct: 540 FDYNKANIRPDAAVELTKIVEVMREYPKMKIDIRSHTDS---RGADSYNLKLSDRRAKAT 596

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            + ++K G+   R+    G+   RL          ++  +  NRR + +V
Sbjct: 597 LEWIVKQGIDRKRLKA-KGYGETRLVNGCSNGVPCTEEEHQENRRSEFIV 645


>gi|254465277|ref|ZP_05078688.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206686185|gb|EDZ46667.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 172

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F        P     LQ     LA +    ++I GH D          N  L   R
Sbjct: 62  DRVLFAIDQHTLSPAAQATLQGQARWLAQNGDYAVTIEGHADEQ---GTREYNLGLGAKR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333
           A +A + L+  G+S  RI  +S      L+I SD    S NRR
Sbjct: 119 ANAAREYLISQGISGSRIKVVSYGKERPLEICSDETCYSKNRR 161


>gi|84516634|ref|ZP_01003993.1| OmpA family protein [Loktanella vestfoldensis SKA53]
 gi|84509670|gb|EAQ06128.1| OmpA family protein [Loktanella vestfoldensis SKA53]
          Length = 218

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+I        L++  + +         + GHTD       A  N  L L RA + 
Sbjct: 75  FEFDSAILDSLAQATLRQQADWIRQFPEVRFKVFGHTD---LVGSAEYNRNLGLRRAQAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S DR+  +  F   +  I +      NRR
Sbjct: 132 VGYLSTQGISRDRLEAVVSFGATQPLIPTPEPERRNRR 169


>gi|288801512|ref|ZP_06406964.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331593|gb|EFC70079.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 674

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 34/138 (24%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +   PE+   L ++ ++L  +  V I +  HTD   +R     N +LS  R
Sbjct: 505 DNIFYDFDKATLRPESTTSLDELVKLLNENPNVTIELSAHTD---YRGSEEYNKKLSQKR 561

Query: 292 AYSAYQVLMKSGVSEDRISKISGFA------------HHRLKIASDPM------------ 327
           A +    L+  G+S +R++ + G+                  +  D              
Sbjct: 562 AEAVVNYLIAHGISSERLTPV-GYGKEKPKKIKKKLTEKYPWLKEDSALTESFIQSLDKE 620

Query: 328 -----NSANRRIDILVED 340
                N  NRR + +V  
Sbjct: 621 KQEICNQLNRRTEFIVLR 638


>gi|262402315|ref|ZP_06078876.1| outer membrane protein [Vibrio sp. RC586]
 gi|262351097|gb|EEZ00230.1| outer membrane protein [Vibrio sp. RC586]
          Length = 212

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSAIEPAFLTQIRQMAEFLKTYPSTSIELQGYASKV---GGAEHNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ G++ +R++ I G+    L+     D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLLRYGITPNRVN-IVGYGDSVLEADGTDDVSHARNRRVTATVVGYKG 198


>gi|86133957|ref|ZP_01052539.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85820820|gb|EAQ41967.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 370

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILI------SIIDQRNTPM-FDKSSSIPLPETIV 250
           +    +   V  +I K VL E  + G+        S+ID    P+ +D SS+        
Sbjct: 218 RTEEVVVPAVYRSITKQVLVE--KGGLSSWKAVDCSLIDNTPLPINWDFSSATLNEGAKQ 275

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           ++      +      + I  HTD    R   RDN  LS  RA +    L+  G++  ++ 
Sbjct: 276 IIDARLLPIVKDGVAVFIESHTD---MRGTKRDNQELSDRRAKAVTDYLISKGINATQLY 332

Query: 311 KISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342
              GF   RL          S+  ++ NRR    V +++
Sbjct: 333 A-KGFGETRLLNKCADGVVCSESEHAVNRRTTFRVVNQK 370


>gi|15641629|ref|NP_231261.1| outer membrane protein, putative [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591817|ref|ZP_01679004.1| outer membrane protein, putative [Vibrio cholerae 2740-80]
 gi|121730010|ref|ZP_01682424.1| outer membrane protein, putative [Vibrio cholerae V52]
 gi|147673877|ref|YP_001217173.1| putative outer membrane protein [Vibrio cholerae O395]
 gi|153214683|ref|ZP_01949543.1| outer membrane protein, putative [Vibrio cholerae 1587]
 gi|153802238|ref|ZP_01956824.1| outer membrane protein, putative [Vibrio cholerae MZO-3]
 gi|153819367|ref|ZP_01972034.1| outer membrane protein, putative [Vibrio cholerae NCTC 8457]
 gi|153822202|ref|ZP_01974869.1| outer membrane protein, putative [Vibrio cholerae B33]
 gi|227081775|ref|YP_002810326.1| putative outer membrane protein [Vibrio cholerae M66-2]
 gi|229508265|ref|ZP_04397770.1| outer membrane protein [Vibrio cholerae BX 330286]
 gi|229511496|ref|ZP_04400975.1| outer membrane protein [Vibrio cholerae B33]
 gi|229518635|ref|ZP_04408078.1| outer membrane protein [Vibrio cholerae RC9]
 gi|229520779|ref|ZP_04410202.1| outer membrane protein [Vibrio cholerae TM 11079-80]
 gi|229523717|ref|ZP_04413122.1| outer membrane protein [Vibrio cholerae bv. albensis VL426]
 gi|229529345|ref|ZP_04418735.1| outer membrane protein [Vibrio cholerae 12129(1)]
 gi|229607839|ref|YP_002878487.1| outer membrane protein [Vibrio cholerae MJ-1236]
 gi|254226120|ref|ZP_04919717.1| outer membrane protein, putative [Vibrio cholerae V51]
 gi|254285433|ref|ZP_04960398.1| outer membrane protein, putative [Vibrio cholerae AM-19226]
 gi|254848742|ref|ZP_05238092.1| outer membrane protein [Vibrio cholerae MO10]
 gi|255744948|ref|ZP_05418898.1| outer membrane protein [Vibrio cholera CIRS 101]
 gi|262161767|ref|ZP_06030785.1| outer membrane protein [Vibrio cholerae INDRE 91/1]
 gi|262169640|ref|ZP_06037331.1| outer membrane protein [Vibrio cholerae RC27]
 gi|262189703|ref|ZP_06048070.1| outer membrane protein [Vibrio cholerae CT 5369-93]
 gi|298498295|ref|ZP_07008102.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656135|gb|AAF94775.1| outer membrane protein, putative [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546319|gb|EAX56596.1| outer membrane protein, putative [Vibrio cholerae 2740-80]
 gi|121628244|gb|EAX60761.1| outer membrane protein, putative [Vibrio cholerae V52]
 gi|124115205|gb|EAY34025.1| outer membrane protein, putative [Vibrio cholerae 1587]
 gi|124122220|gb|EAY40963.1| outer membrane protein, putative [Vibrio cholerae MZO-3]
 gi|125621355|gb|EAZ49692.1| outer membrane protein, putative [Vibrio cholerae V51]
 gi|126510081|gb|EAZ72675.1| outer membrane protein, putative [Vibrio cholerae NCTC 8457]
 gi|126520270|gb|EAZ77493.1| outer membrane protein, putative [Vibrio cholerae B33]
 gi|146315760|gb|ABQ20299.1| putative outer membrane protein [Vibrio cholerae O395]
 gi|150424705|gb|EDN16641.1| outer membrane protein, putative [Vibrio cholerae AM-19226]
 gi|227009663|gb|ACP05875.1| putative outer membrane protein [Vibrio cholerae M66-2]
 gi|227013531|gb|ACP09741.1| putative outer membrane protein [Vibrio cholerae O395]
 gi|229333119|gb|EEN98605.1| outer membrane protein [Vibrio cholerae 12129(1)]
 gi|229337298|gb|EEO02315.1| outer membrane protein [Vibrio cholerae bv. albensis VL426]
 gi|229342334|gb|EEO07329.1| outer membrane protein [Vibrio cholerae TM 11079-80]
 gi|229343324|gb|EEO08299.1| outer membrane protein [Vibrio cholerae RC9]
 gi|229351461|gb|EEO16402.1| outer membrane protein [Vibrio cholerae B33]
 gi|229355770|gb|EEO20691.1| outer membrane protein [Vibrio cholerae BX 330286]
 gi|229370494|gb|ACQ60917.1| outer membrane protein [Vibrio cholerae MJ-1236]
 gi|254844447|gb|EET22861.1| outer membrane protein [Vibrio cholerae MO10]
 gi|255737419|gb|EET92814.1| outer membrane protein [Vibrio cholera CIRS 101]
 gi|262021874|gb|EEY40584.1| outer membrane protein [Vibrio cholerae RC27]
 gi|262028499|gb|EEY47154.1| outer membrane protein [Vibrio cholerae INDRE 91/1]
 gi|262034416|gb|EEY52789.1| outer membrane protein [Vibrio cholerae CT 5369-93]
 gi|297542628|gb|EFH78678.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327484234|gb|AEA78641.1| outer membrane protein, putative [Vibrio cholerae LMA3894-4]
          Length = 212

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L++    D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198


>gi|313497453|gb|ADR58819.1| OmpA/MotB domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 326

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I + +        + + GH+D S  R     N  LS  RA +
Sbjct: 179 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDNSGNRLA---NRDLSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
                  +GV +++I+ +           ++     + NRR++I ++ 
Sbjct: 236 VADYFKANGVPDEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 282


>gi|42524629|ref|NP_970009.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100]
 gi|39576839|emb|CAE78068.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100]
          Length = 318

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
          E  Q I+IKK +      +  GSWK+  ADFMT LMAFFLVMW++    ++TKKA+  YF
Sbjct: 3  EKKQTIVIKKIIVSGGGHH-GGSWKVALADFMTALMAFFLVMWLVG-QSEETKKAVSDYF 60

Query: 70 NPFGK 74
          +    
Sbjct: 61 STPSV 65


>gi|294670501|ref|ZP_06735381.1| hypothetical protein NEIELOOT_02220 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307780|gb|EFE49023.1| hypothetical protein NEIELOOT_02220 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 271

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+       P+ I  L  +   L+ +    + + GHTD   F    + N  LS  RA +
Sbjct: 90  LFNFDKDNLRPQAIETLNSLAARLSDANVQAVRVEGHTD---FMGSEQYNQALSERRANA 146

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV   +IS + G    +
Sbjct: 147 VANYLVNQGVPAGKISAV-GLGESQ 170


>gi|261253024|ref|ZP_05945597.1| outer membrane protein [Vibrio orientalis CIP 102891]
 gi|260936415|gb|EEX92404.1| outer membrane protein [Vibrio orientalis CIP 102891]
          Length = 279

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 15/189 (7%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG----LVADNIVKGVL 216
             LEK            L       + ++ RL +L  ++    S        +  +    
Sbjct: 84  QALEKQNRIARELEGGLLLDAANDLVIQRNRLNELELQLDYVTSQSKCLPPTNEHLFQRR 143

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275
             T      +  +D +    F  +S+   P+ +  L +   +L       +++ GH D+ 
Sbjct: 144 LATIDELYNLLNVDNQ----FAFNSTEINPKYMGHLAEASNILKQHPQFHLAVTGHADSV 199

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  L++ RA    + L   G+S  RI +             D       NRR
Sbjct: 200 ---GDVSYNQELAMGRAQQVKRYLTIFGLSPSRI-QTKSVGDTLPLYEGDSDGVRLTNRR 255

Query: 334 IDILVEDRQ 342
           + I V D +
Sbjct: 256 VSIEVIDTE 264


>gi|163739042|ref|ZP_02146455.1| OmpA family protein [Phaeobacter gallaeciensis BS107]
 gi|161387847|gb|EDQ12203.1| OmpA family protein [Phaeobacter gallaeciensis BS107]
          Length = 183

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F  +           L++  +     +    I GHTD+   R     N RLS  RA + 
Sbjct: 85  FFATNRHRISAAGQQRLREFFQTANARS--FIITGHTDS---RASDEYNMRLSQRRANAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +V    G    RI +  G+     ++ +D     + NRR++I+
Sbjct: 140 AKVGQSVG---ARILEARGYGERDPRVPNDSAANMAQNRRVEII 180


>gi|153826170|ref|ZP_01978837.1| outer membrane protein, putative [Vibrio cholerae MZO-2]
 gi|149740111|gb|EDM54276.1| outer membrane protein, putative [Vibrio cholerae MZO-2]
          Length = 212

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L++    D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198


>gi|325955085|ref|YP_004238745.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437703|gb|ADX68167.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 474

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S      +   L    EV+         + GHTDA         N  LS  RA S 
Sbjct: 366 FDYDSDKIRQVSYSKLDNAAEVIMKHPNYNFWVEGHTDA---AGPDAYNQNLSERRAASV 422

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
            + L+  GV+  ++  I G     LK    +P        N  NRR+
Sbjct: 423 VRYLVNKGVNSAQLFPI-GKGESELKHPECNPTTNCPAWKNLENRRV 468


>gi|298529291|ref|ZP_07016694.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510727|gb|EFI34630.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 359

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    E   +L +    +   T+  + + GHT           N  LS  RA S 
Sbjct: 258 FDFDSAAIKDEYAEILNEAARQIQDRTDPHVVVEGHTCNI---GPEDYNMELSQRRADSV 314

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
              L++ GV ED I         R +  +D       NRR+++ +E
Sbjct: 315 ADYLVEQGVDEDAID-TEAHGLTRPEFDNDTREGRQLNRRVEMRLE 359


>gi|165940436|ref|ZP_02228930.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165911633|gb|EDR30316.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
          Length = 307

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 175 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 231

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 232 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 281


>gi|126175870|ref|YP_001052019.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|152999218|ref|YP_001364899.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|160873831|ref|YP_001553147.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|217971891|ref|YP_002356642.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|304411219|ref|ZP_07392834.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307306514|ref|ZP_07586257.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|125999075|gb|ABN63150.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|151363836|gb|ABS06836.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|160859353|gb|ABX47887.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|217497026|gb|ACK45219.1| OmpA/MotB domain protein [Shewanella baltica OS223]
 gi|304350412|gb|EFM14815.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306910805|gb|EFN41233.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|315266058|gb|ADT92911.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 230

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR+G  I I++  N   F    +        VL  +  V    ++  +++ G+TD+ 
Sbjct: 106 VSVTRSGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVAVVAKEYSKTQLNVLGYTDS- 163

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                   N RLS  RA      LM  GV+  R+    G          A+    + NRR
Sbjct: 164 --SGSDSYNLRLSQVRAGEVGNYLMSKGVASARVKS-KGMGEASPIASNANANGRAQNRR 220

Query: 334 IDILVED 340
           ++I++  
Sbjct: 221 VEIVLTP 227


>gi|114046457|ref|YP_737007.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113887899|gb|ABI41950.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 485

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  +      + GHTD    +     N  LS  RA +
Sbjct: 378 LFDYDSERLLPESKPVLEVLASYLKQNPTLSFYVVGHTDD---KGERSYNQSLSERRAAT 434

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +       +D     NRR+++++   +
Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484


>gi|126176195|ref|YP_001052344.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|160877206|ref|YP_001556522.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|304412239|ref|ZP_07393848.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307306983|ref|ZP_07586723.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|125999400|gb|ABN63475.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|160862728|gb|ABX51262.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|304349505|gb|EFM13914.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306910561|gb|EFN40991.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|315269410|gb|ADT96263.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 202

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    ++++   L       ++I GHT  +        N  LS DRA +
Sbjct: 79  LFPNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQDRANA 135

Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
              VL  +  +   R++ I G+   R  +     ++   NRR+
Sbjct: 136 VTAVLAERFSIDRSRLTAI-GYGSSRPVVLEQTPDAEIRNRRV 177


>gi|189347858|ref|YP_001944387.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
 gi|189342005|gb|ACD91408.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245]
          Length = 416

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD   +   PE+   +  I E+L   +   +   G+TD        + N RLS DR
Sbjct: 309 DRLVFDTGKATLKPESQEQIGNINEILKAFSAVSLKFGGYTDNV---GDPQANLRLSKDR 365

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
           A +    ++K G+ + R+    G+         A++     NRR+D
Sbjct: 366 AEAVMTEIVKLGIDKARLDA-EGYGAEHPVADNATEEGRQKNRRVD 410


>gi|323344506|ref|ZP_08084731.1| OmpA family protein [Prevotella oralis ATCC 33269]
 gi|323094633|gb|EFZ37209.1| OmpA family protein [Prevotella oralis ATCC 33269]
          Length = 688

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +   PE+   L ++ ++L  +  V I +  H D   ++     N RLS  R
Sbjct: 519 DNIFYDFDKATLRPESTKALDELVKLLNENPNVTIELSAHCD---YKGSDEYNKRLSQQR 575

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L+  G+++DR++ + G+   + K
Sbjct: 576 ANAVVAYLIDKGIAKDRLTPV-GYGKEKPK 604


>gi|167949850|ref|ZP_02536924.1| sodium-type flagellar protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 285

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +          +L+++ + L      + + I GH D        + N +LS  RA +
Sbjct: 182 FAFNLHDLDASAKALLKELADYLNRDERVKSVRIEGHADDQ---GRRKYNLKLSERRAMA 238

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
               L++ GV + R+     +   R K+ S      + NRR+ IL+
Sbjct: 239 VKAYLVEQGVEQARL-ATFHYGESRPKVRSRSQKARAKNRRVAILL 283


>gi|118591643|ref|ZP_01549039.1| hypothetical protein SIAM614_21907 [Stappia aggregata IAM 12614]
 gi|118435636|gb|EAV42281.1| hypothetical protein SIAM614_21907 [Stappia aggregata IAM 12614]
          Length = 316

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 29/203 (14%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           + + L      ++++   ++  L P      +  + + RL +LA  ++            
Sbjct: 123 QQQTLPAFRAYQEALGLVDDTELTPAEPAHAMIARLRDRLDELAVVVAQISEEP------ 176

Query: 213 KGVLFETTRTGILISIIDQRNTPM----------FDKSSSIPLPETIVVLQKIGEVL-AH 261
           + +    TR+G  IS                   F     +         + + E L   
Sbjct: 177 QDIKIPVTRSGQSISQYSFSTRGYKRKKTLVPIQFVYDQDVMTKAGKTSFEDVQEALEKQ 236

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               I + GHTD  P  + A  N +LSL RA +    L+ +G S     ++ G    +  
Sbjct: 237 GAPDIQVIGHTD--PVGSDAY-NLQLSLKRAEAVRSALLAAGYSGS--IEVLGMGESQPF 291

Query: 322 IASDP----MNSAN---RRIDIL 337
              DP        N   RR++ +
Sbjct: 292 QFDDPSLYTEEVRNQAHRRVEFV 314


>gi|319902507|ref|YP_004162235.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319417538|gb|ADV44649.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 223

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 227 SIIDQRNTP----------MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDAS 275
            I D    P          +F  +S+    +    L+ + ++L   ST  I+I GHTD  
Sbjct: 92  QITDSNGLPAVKVSFAAGILFGFNSAALSNDAKASLRDLAQILKDDSTTDIAIIGHTDKV 151

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRR 333
                   N ++S +RAYS    L   GVS  +  K+   G+A +     +D     NRR
Sbjct: 152 ---GTYEANMKVSKNRAYSVENYLQDCGVSPAQFKKVEGVGYAQYDESKTAD----QNRR 204

Query: 334 IDI 336
           +++
Sbjct: 205 VEV 207


>gi|298485733|ref|ZP_07003812.1| Outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159759|gb|EFI00801.1| Outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 229

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272
               E  R G  I +I       F   SS         L  +   L   +   I I G+T
Sbjct: 99  NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
           D++      + N  LS  RA S    L    V +  +  + G    +   ++      + 
Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQVVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213

Query: 331 NRRIDILVEDRQG 343
           NRR+++ ++   G
Sbjct: 214 NRRVEVNLKPIPG 226


>gi|295135723|ref|YP_003586399.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294983738|gb|ADF54203.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 536

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 94/289 (32%), Gaps = 34/289 (11%)

Query: 57  TDDDTKKAIEQYFNPFGKNLMTASKGIF-DEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
           T+ +      + F+     L      +F     P  + S +   ++I+E  T  + +   
Sbjct: 257 TNVEALPFTSEEFSTEHPALSPDGSTLFFASDMPGGQGSFDLYKVAINEDGTYGTPENLG 316

Query: 116 GSTNQKKQYQRL---ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
              N + + Q     E+NI Y ++          + +      +         S   +  
Sbjct: 317 PGINTEHREQFPFVSEDNILYFASDGHLGFGNLDVYKSEGNYTEAENLGSSVNSAYDDFA 376

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           + +    K+  L   R                    DN+      +  +    I I    
Sbjct: 377 FIINEGEKKGFLTSNRS-----------------GNDNLYSFTRTKYVKKTRQIDIP-HE 418

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F+   S    E   VL K+ ++L  S    I I  H DA   R     N +LS  R
Sbjct: 419 NRIYFEFDKSKVTEEYQEVLDKVIDILKGSDATEIKIASHADA---RGTEEYNLKLSQRR 475

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333
           A +  + L+  G+S + I+   G+   +           ++   + NRR
Sbjct: 476 ADATKEYLVAKGISSENIT-TKGYGESQPVNDCTEERGCTEAEYAKNRR 523


>gi|330447358|ref|ZP_08311007.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491549|dbj|GAA05504.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 200

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           ++   +   S +   V +N          R  + I+         F   S++  P+    
Sbjct: 46  IEAREQCAKSAVGAEVDNNGCSSQSEYIVRRDLHIN---------FANDSAVVEPQYQGQ 96

Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRI 309
           + K+ + +       ++I GHT           N  LS  RA +    L  + G+S +RI
Sbjct: 97  IAKLADFMKQYPASKVTIEGHTSKV---GRYDYNMVLSQRRAENVATDLEHQFGISANRI 153

Query: 310 SKISGFAHHRLKIA--SDPMNSANRRI 334
             I G+ +  L     ++  N  NRRI
Sbjct: 154 KAI-GYGYTHLLDTGMTEEANQKNRRI 179


>gi|325287507|ref|YP_004263297.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322961|gb|ADY30426.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 393

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 22/268 (8%)

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
             G  D  N    +    +                 G     K      +    +    Q
Sbjct: 138 GLGYTDANNKGRGTYNGVVGFRTWITERIGLDFNSSGKWAMDKGDGATNHLQHAVGVVYQ 197

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            +  K    +  EK   + +    ++ +            + ++LA + KK  + L    
Sbjct: 198 FKAEKGLSKKGLEKQAQIEEILKEQQRVADSIAAAKKQEEEARLLAERLKKEQEALRLAE 257

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                        + +  +    G   SI        F  +SS     T   L  I E+L
Sbjct: 258 VEKEKAAAEKQRREDLQAKINSFG---SIN-------FALNSSYLDSRTKKTLNSIAELL 307

Query: 260 AHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
             +    + +  +TD+        + W LS  R   +   L+  GVS ++++  + F   
Sbjct: 308 QENPTVTVKLGAYTDSR--GTDKYNLW-LSQRRMQRSLDFLVSKGVSSEKVNA-TAFGEE 363

Query: 319 RLKIA-------SDPMNSANRRIDILVE 339
            L          ++  +  NRRI+I V+
Sbjct: 364 ELLNNCEDGVYCTEQEHKINRRIEITVD 391


>gi|302381967|ref|YP_003817790.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192595|gb|ADL00167.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 200

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           D   +  + + G     + +    +    G  +  ++   ++  F        PE    L
Sbjct: 53  DATDQRVAQVEGTAGQALERANAAQVLAEGKFMYEVVLSDDSVKFPSDRDALSPEAEQRL 112

Query: 253 QKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            ++ + L    + +   I+GHTDA         N  L   RA +  + L + G++ +R++
Sbjct: 113 AELAQRLKAENKNVYLEIQGHTDA---AGPESYNDALGEARAEAVRRSLSRQGIALNRMA 169

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340
            IS +        +      + NRR+ I+V  
Sbjct: 170 TIS-YGEEAPVADNATPEGRAQNRRVAIVVLS 200


>gi|222824332|ref|YP_002575906.1| flagellar motor component MotB [Campylobacter lari RM2100]
 gi|222539553|gb|ACM64654.1| flagellar motor component MotB [Campylobacter lari RM2100]
          Length = 244

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 30/210 (14%)

Query: 134 LSNSQQSEHCKNSLTRDSE--KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            SN  ++E  K    +  E      L K +++    +   N  +  L K K L++ +++ 
Sbjct: 39  ESNPAKTEALKTEFVKIFEFTASNPLEKESEVHNKYSAPSNANVEELEKLKKLSITQQEN 98

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIV 250
           ++ L   +    + +V +                           F ++S      +   
Sbjct: 99  IEKLKAALDQRENNIVLN---------------------LPARVEFARASVEINSADVQD 137

Query: 251 VLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            L++I EVL    +   I   G+TDAS      + N+ L+  RA      L+  G++  +
Sbjct: 138 FLKRISEVLKRMPKQAQIELRGYTDAS--DKDPKRNFDLASKRAQVVADYLIARGINPAQ 195

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +  +S F  +    A +  +  N R++  +
Sbjct: 196 LIVVS-FGENYPLSA-NKEDEINNRVEFYI 223



 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 7/208 (3%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ ++    +A++  F       
Sbjct: 1   MGKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISESNPAKTEALKTEF--VKIFE 57

Query: 77  MTASKGIFDEQNPPER-SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            TAS  +  E     + S+ +  ++   E + K S+  +      K    + ENNI    
Sbjct: 58  FTASNPLEKESEVHNKYSAPSNANVEELEKLKKLSITQQENIEKLKAALDQRENNIVLNL 117

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
            ++      +     ++    L + +++ K + K+    L   +     + K  KR  DL
Sbjct: 118 PARVEFARASVEINSADVQDFLKRISEVLKRMPKQAQIELRGYTD---ASDKDPKRNFDL 174

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTG 223
           A K +  ++  +    +          G
Sbjct: 175 ASKRAQVVADYLIARGINPAQLIVVSFG 202


>gi|124007657|ref|ZP_01692361.1| outer membrane protein OmpA family, putative [Microscilla marina
           ATCC 23134]
 gi|123986955|gb|EAY26720.1| outer membrane protein OmpA family, putative [Microscilla marina
           ATCC 23134]
          Length = 632

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+I   ++ V LQ + +++ H  +  + +  HTDA         N  LS  RA + 
Sbjct: 534 FAYKSTILDAQSRVYLQTVYKLMQHHPDLHLRVEAHTDA---SGTWTSNLLLSEQRAKAV 590

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L   G+   +I  + GF   R   AS    + NRR+ +
Sbjct: 591 KAFLTDLGIPSGQIV-VKGFGEARPLGAS---AAKNRRVAL 627


>gi|294783516|ref|ZP_06748840.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA]
 gi|294480394|gb|EFG28171.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA]
          Length = 102

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
            S+  P+   +L  + + +  +   ++I GHTD+       + N  LS  RA +    L+
Sbjct: 3   KSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIGLSRRRAEAVKAKLI 59

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           + G+ EDRI  I           ++       NRR++  +  R
Sbjct: 60  EFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 102


>gi|260596996|ref|YP_003209567.1| hypothetical protein CTU_12040 [Cronobacter turicensis z3032]
 gi|260216173|emb|CBA29013.1| hypothetical protein CTU_12040 [Cronobacter turicensis z3032]
          Length = 465

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +F   S+   P +   LQ +  ++         I GH+D +        N +LS+ RA 
Sbjct: 348 SLFSSGSARLRPHSPTALQPLLMLVNQHPGRRFLIIGHSDNT---GSPEVNRQLSVSRAI 404

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           +  + L+K+        ++ G        ++D       NRR++ +   
Sbjct: 405 AVREWLVKTTRRSATQFEVYGSGASDPVASNDSEMGRELNRRVEAIALP 453


>gi|124008177|ref|ZP_01692874.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123986276|gb|EAY26098.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 515

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 18/257 (7%)

Query: 81  KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140
             +F     P        ++ +      N   +     NQ K       ++     ++  
Sbjct: 263 GSMFWYNYAPFSGFIKPGNVGVGLWYELNGAAIVSVEMNQPKYSVAFSYDLSMDRQAK-- 320

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              + S        +   K    +   ++ +   + P   + I  +   KR + +  + +
Sbjct: 321 ---RLSAFELKVGFRIGKKEVKRKPKPDEIKQDTIRPKDDKFIYTVVVTKRNRRIIGRDT 377

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
                +  DN+        T   + I     ++T  F  ++      T  +L  I  +L 
Sbjct: 378 IATDPIKVDNVPPK---NLTTRDLEI----LKSTAYFYYTNDDINKATESLLNDIVVILK 430

Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
              ++ + + GHT           N  LS  RA +  + L+  G+ E+R+  + G+   R
Sbjct: 431 KHPDIYLELEGHTCN--IGETEDANQNLSERRASAVKKYLVNKGIDENRLKTV-GYGSKR 487

Query: 320 LKIASDPM--NSANRRI 334
              ++        NRR+
Sbjct: 488 PVASNKTEFGKIRNRRV 504


>gi|91784930|ref|YP_560136.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|91688884|gb|ABE32084.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 212

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           +      K    D   ++  TL   + +    G++    R+   +++ D     +F++ S
Sbjct: 41  QQELANAKASKGDSVARMMQTLGAKLGNGEASGLMT-LDRSTNRLTLRD----GVFERGS 95

Query: 242 SIPLPETIVVLQ----KIGEVLAHSTE-VISIRGHTDASPFR----------NIARDNWR 286
           +   PE    +     ++   +A + +  + + G+TD  P             +  DN+ 
Sbjct: 96  ACLTPEARAAIGAVQGELAHFIADNPKARMLVEGYTDNLPVTRPVIDYQRFCTVYDDNFT 155

Query: 287 LSLDRAYSAYQVLMK--SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           LS  RA  A + L+   S  +  RI  ++G+   R     D  +  NRR+++
Sbjct: 156 LSAARAREARRALLGTISDDAAKRIV-VAGYGESRPLPGVDAADPRNRRVEV 206


>gi|300716120|ref|YP_003740923.1| outer membrane protein A [Erwinia billingiae Eb661]
 gi|299061956|emb|CAX59072.1| Outer membrane protein A [Erwinia billingiae Eb661]
          Length = 357

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L+        + + G+TD     +    N +LS
Sbjct: 229 KSDVLFTFNKASLKPEGQQALDQLYTQLSSLDPKDGSVVVLGYTD--RIGSDQY-NQKLS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI- 336
             RA S    L+  G+  ++IS   G         +  D +   N         RR++I 
Sbjct: 286 EKRAQSVVDYLVSKGIPSNKISA-RGMGESNPVTGNTCDSVKGRNALIDCLAPDRRVEIE 344

Query: 337 ------LVEDRQG 343
                 +V   QG
Sbjct: 345 VKGIKDVVTQPQG 357


>gi|212636483|ref|YP_002313008.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212557967|gb|ACJ30421.1| OmpA [Shewanella piezotolerans WP3]
          Length = 364

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+I    +   ++ + E ++      + I GH   +     A  N  LS  RA + 
Sbjct: 253 FATNSAIVQESSYSDIKDLAEYMSKHPNSEVVIAGHASNT---GAADYNMALSERRAIAV 309

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
             VL+ + G++  R+S   G+   +  I  +S   N ANRRI+
Sbjct: 310 ADVLINEYGIAPARVSS-KGYGITQPLIEGSSKEANQANRRIE 351


>gi|289625247|ref|ZP_06458201.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870468|gb|EGH05177.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 647

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%)

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           ++N P  ++   ID      +    VD +  S     +       +   +  +Q++    
Sbjct: 385 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 441

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                      + K    +  ++ +    +               ++++L   +   L+ 
Sbjct: 442 KARIPDYWYPAIYKQVPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 499

Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261
               +  +  +       +  I  I   +  +F    +            L  I   L +
Sbjct: 500 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 559

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           +     I I GH D       A+ N ++S  RA +    L+  G+  + +  + G   ++
Sbjct: 560 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 615

Query: 320 LKIASDPMNSA---------NRRIDILV 338
             +  D              NRR++I V
Sbjct: 616 PLVHCDMQMPRAELIHCLEPNRRVEIEV 643


>gi|71907621|ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847242|gb|AAZ46738.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 195

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +I   E+   L  I + +A  +   + + GHTD          N +LSL RA   
Sbjct: 94  FEAGGNILTQESKAALVNIRKEIAERAASEVMVIGHTDRV---GSVEGNDKLSLQRAEGL 150

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             +L++SG+S +++  + G       + +        NRR++I
Sbjct: 151 RDLLIESGISAEKMEAV-GRGERDPLVPTADEVDEPKNRRVEI 192


>gi|28898409|ref|NP_798014.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895070|ref|ZP_05903566.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260900920|ref|ZP_05909315.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308094379|ref|ZP_05888926.2| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|28806626|dbj|BAC59898.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086027|gb|EFO35722.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093578|gb|EFO43273.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308110719|gb|EFO48259.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
          Length = 206

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     ++ N  LS  RA
Sbjct: 81  RVLFANDSDEINPVFRRQIRELSDFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+  +R+ +I GF    L         ++ NRR+   V   +G
Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189


>gi|153838882|ref|ZP_01991549.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149747673|gb|EDM58587.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 206

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+   +     ++ N  LS  RA
Sbjct: 81  RVLFANDSDEINPVFRRQIRELSEFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+  +R+ +I GF    L         ++ NRR+   V   +G
Sbjct: 138 KNVRDALLGYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189


>gi|42527651|ref|NP_972749.1| OmpA family protein [Treponema denticola ATCC 35405]
 gi|41818479|gb|AAS12668.1| OmpA family protein [Treponema denticola ATCC 35405]
          Length = 449

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +  L+  +  KG+     +  + I + D R    F       LPE +  +  I E L   
Sbjct: 315 IELLLEKHKEKGIELSNPKNIVKIIMYDIR----FVADMPDVLPEEMGKIDVIAEALLKL 370

Query: 263 T--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                  I GHT      N   D   LS+ RA      + K G+   RI   +G+   R 
Sbjct: 371 GPYTKFLIEGHTADL---NRPEDEKILSVQRAERIADEISKRGIDRSRIM-TAGYGSTRP 426

Query: 321 KIASD--PMNSANRRIDILVED 340
              S+     + NRR++I V  
Sbjct: 427 VAPSNNETNMAKNRRVEITVIR 448


>gi|325269448|ref|ZP_08136065.1| immunogenic lipoprotein PG3 [Prevotella multiformis DSM 16608]
 gi|324988369|gb|EGC20335.1| immunogenic lipoprotein PG3 [Prevotella multiformis DSM 16608]
          Length = 225

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++   A  +    + + T   G+    +   +  +F  + S         L K   +
Sbjct: 74  MDKVAREAAQALPNARVDKVTDANGLQCVKVTFDSGILFPLNGSNLNVSAKNDLTKFAGL 133

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  ++   ++I+G+TDA         N  LS  RA S    L   GV+  +I  + GF  
Sbjct: 134 MKRNSNCDVAIQGYTDA---SGNDNINIPLSQRRAESVSSYLKGQGVTGRQIRSVQGFGS 190

Query: 318 HRLKIASDPMNSANRRIDILV 338
               I +  ++ ANRR+++ +
Sbjct: 191 ANP-IENKTVSQANRRVEVYL 210


>gi|254428955|ref|ZP_05042662.1| Thrombospondin type 3 repeat family [Alcanivorax sp. DG881]
 gi|196195124|gb|EDX90083.1| Thrombospondin type 3 repeat family [Alcanivorax sp. DG881]
          Length = 384

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 90/290 (31%), Gaps = 36/290 (12%)

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           AI ++F   G +      GI   +   E +S +  D        +      +        
Sbjct: 100 AIRKHF--AGNSAFEPYVGIGAGEFRTEPNSDSSNDFKETIGTLETGFQTMLHPH---FL 154

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
                   +     +        L        +  +   +E  ++  +   +P    +  
Sbjct: 155 LDVGARPYYSFRTERWDAEVYAGLNFIIGGSSEKEEPAPVENVVSDSDGDGVPDERDQCA 214

Query: 184 LAMKRKK------RLQDLAKKISSTLS--------GLVADNIVKGVLFETTRTGILISII 229
                 +       L D    I +++          LV D   +  L +  +  + +   
Sbjct: 215 NTPAGAQVDATGCELDDDNDSIVNSMDECPNTPAGALVDDKGCQKYLDKDVKETLYVE-- 272

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
                  F    +     +   L+ + E +       + + GHTD++     A  N +LS
Sbjct: 273 -------FGHDKAEVRQTSYPSLENLAEGMRQYPSANLVLEGHTDST---GSAAYNKKLS 322

Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             RA +   VL+    VS DRI+ + G+   +      +    + NRR++
Sbjct: 323 QQRADAVKTVLVDHYNVSADRITTV-GYGEEKPIADNKTSEGRAENRRVE 371


>gi|313675340|ref|YP_004053336.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312942038|gb|ADR21228.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 745

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +    L KI EV+  + + VI +  HTDA   R     N RLS  RA ++
Sbjct: 637 FDLGKSEIRKDAAKELDKIVEVMKANPKMVIELGSHTDA---RGSDAFNLRLSDKRAKAS 693

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
              ++  G+ EDRIS   G+   +L          S+  +  NRR +  V 
Sbjct: 694 AAYIVSQGIDEDRISG-KGYGETQLINDCGNGVNCSEEEHQLNRRTEFKVL 743


>gi|282859313|ref|ZP_06268425.1| OmpA family protein [Prevotella bivia JCVIHMP010]
 gi|282587893|gb|EFB93086.1| OmpA family protein [Prevotella bivia JCVIHMP010]
          Length = 226

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
              ++  VA  +    + + T   G+    +   +  +F  +S      +   L +  +V
Sbjct: 74  MDKVAREVASRVPNASVEKVTDANGLQCVKVTFDSGILFPLNSYTLSSASKKDLYEFAKV 133

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  + +  ++I+G+TDA         N  LS +RA +    L  +GVS  +I  + G   
Sbjct: 134 MKANADCDVAIQGYTDA---SGSDNINLPLSQNRANAVSSCLRSNGVSGRQIRSVEGLGS 190

Query: 318 HRLKIASDPMNSANRRIDI 336
               I +  ++  NRR+++
Sbjct: 191 ANP-IENARVSQKNRRVEV 208


>gi|89069954|ref|ZP_01157287.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
 gi|89044508|gb|EAR50636.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
          Length = 298

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+   P +   L  +   LA +    + + GHTD+         N  LS  RA   
Sbjct: 193 FETGSARLGPGSFASLDALARYLAAAPARRVVLVGHTDSQ---GSLAGNISLSRRRADQV 249

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
              L+   G    +++    G+        +     ANRR++ ++   +
Sbjct: 250 RTRLIAEHGTDPAQLTADGVGYLAPVASNLTPEGREANRRVEAVLVSTE 298


>gi|120436189|ref|YP_861875.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578339|emb|CAL66808.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 620

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 27/273 (9%)

Query: 79  ASKGIFDEQNPPERSSQN----KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
           A  G+FD     E          ++ ++D+       D K G  +  ++    +  +F  
Sbjct: 348 AGLGLFDIFRMTEEDGIENLGEPVNSNMDDFAYFQVSDSKEGYISTNREGGSDDIFVFNK 407

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            N    +         S       +  D  K   KE  +            + R K+   
Sbjct: 408 LNPLILKGQVTDAVNGSPIAAATVRLMDENK---KEIAFLETDEEGNYETEIARDKKFPV 464

Query: 195 LAKKIS--------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            AK+I         ST+     + ++  +     +    +  + + +   FD   S   P
Sbjct: 465 EAKEIEYETFEGEISTMDSDEKEEMIYDIELSPVKD---VEYLAEIDNIYFDFDKSNIRP 521

Query: 247 ETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           +    L K+  ++       VI I  HTD    R     N +L+  RA S Y  L+  G+
Sbjct: 522 DAATELDKLVALMKDEYPELVIEIGSHTDR---RGTNSYNEKLAERRAKSTYDYLVSKGI 578

Query: 305 SEDRISKISGFAHHRLKIA----SDPMNSANRR 333
           SEDRI +  G+   +  I     S+  +  NRR
Sbjct: 579 SEDRIVEFKGYGETKPAIDCDRCSEKDHQLNRR 611


>gi|108763487|ref|YP_633317.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|108467367|gb|ABF92552.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 171

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++          + K V  +    G       ++N   F   ++         L+K+   
Sbjct: 28  LTKAAGDAGKSAVEKRVNTKLMDEG-------RQNQCSFKTGTAQLDAGCEAKLKKLTNA 80

Query: 259 LAHS----------TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           L  +          +    + GHTD++     A  N +LS  RA +  + L+  G+    
Sbjct: 81  LVDAKKQLVAAGVKSYKFEVSGHTDST---GDAAKNKKLSEQRAETIVKELIARGIPRGE 137

Query: 309 ISKISGFAHHRLKIASDPMN---SANRRIDILV 338
           I  + G+   +  +  D      + NRR ++ V
Sbjct: 138 IIAV-GYGSEKPLVKPDDTAAKKAKNRRYELQV 169


>gi|51597552|ref|YP_071743.1| PAL/OmpA family membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186896682|ref|YP_001873794.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590834|emb|CAH22486.1| Putative PAL/OmpA-family membrane protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699708|gb|ACC90337.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 578

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|203287626|ref|YP_002222641.1| outer membrane protein [Borrelia recurrentis A1]
 gi|201084846|gb|ACH94420.1| outer membrane protein [Borrelia recurrentis A1]
          Length = 385

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   +    +  +  E  + GI +S+ D      F   S   + +    L+ I  +
Sbjct: 249 IENEIKEYIKREQIDSIEIEKNKNGIKLSL-DIE----FYPDSFQIIRKEHNKLKHIANL 303

Query: 259 LAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I I GHT         +    LS  RA++    L+K  V         G+  
Sbjct: 304 LEKFQDNNILIEGHTAKFGTEQEMQ---ELSEKRAHTIGNYLLKMKVKNKNQIFFKGWGA 360

Query: 318 HRLK-IASDPMNSANRRIDILVED 340
            + K ++S P+ S NRR++I + +
Sbjct: 361 KKPKYVSSSPLASKNRRVEITILN 384


>gi|203284088|ref|YP_002221828.1| outer membrane protein [Borrelia duttonii Ly]
 gi|201083531|gb|ACH93122.1| outer membrane protein [Borrelia duttonii Ly]
          Length = 385

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   +    +  +  E  + GI +S+ D      F   S   + +    L+ I  +
Sbjct: 249 IENEIKEYIKREQIDSIEIEKNKNGIKLSL-DIE----FYPDSFQIIRKEHNKLKHIANL 303

Query: 259 LAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L       I I GHT         +    LS  RA++    L+K  V         G+  
Sbjct: 304 LEKFQDNNILIEGHTAKFGTEQEMQ---ELSEKRAHTIGNYLLKMKVKNKNQIFFKGWGA 360

Query: 318 HRLK-IASDPMNSANRRIDILVED 340
            + K ++S P+ S NRR++I + +
Sbjct: 361 KKPKYVSSSPLASKNRRVEITILN 384


>gi|110639098|ref|YP_679307.1| peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281779|gb|ABG59965.1| peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 673

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I I GHTD+   +     N  LS  RA +    L+  G+S++R+ K  G+   R   ++D
Sbjct: 599 IEISGHTDS---KGSDEYNRVLSRKRAQAVVNWLVSKGISKNRL-KFEGYGESRPLASND 654

Query: 326 ---PMNSANRRIDILVEDR 341
                   NRR +  +  +
Sbjct: 655 DELEGRELNRRTEFKILKK 673


>gi|22126581|ref|NP_670004.1| hypothetical protein y2702 [Yersinia pestis KIM 10]
 gi|22127241|ref|NP_670664.1| hypothetical protein y3365 [Yersinia pestis KIM 10]
 gi|45443207|ref|NP_994746.1| OmpA family membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108806286|ref|YP_650202.1| OmpA family membrane protein [Yersinia pestis Antiqua]
 gi|108812671|ref|YP_648438.1| OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|145597850|ref|YP_001161926.1| OmpA-family membrane protein [Yersinia pestis Pestoides F]
 gi|149367019|ref|ZP_01889052.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125]
 gi|218928146|ref|YP_002346021.1| putative OmpA family membrane protein [Yersinia pestis CO92]
 gi|229840896|ref|ZP_04461055.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842543|ref|ZP_04462698.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903796|ref|ZP_04518909.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|270486867|ref|ZP_06203941.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|270487580|ref|ZP_06204654.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294502870|ref|YP_003566932.1| putative OmpA-family membrane protein [Yersinia pestis Z176003]
 gi|21959587|gb|AAM86255.1|AE013873_3 hypothetical [Yersinia pestis KIM 10]
 gi|21960312|gb|AAM86915.1|AE013938_3 hypothetical [Yersinia pestis KIM 10]
 gi|45438075|gb|AAS63623.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776319|gb|ABG18838.1| OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|108778199|gb|ABG12257.1| putative OmpA-family membrane protein [Yersinia pestis Antiqua]
 gi|115346757|emb|CAL19641.1| putative OmpA-family membrane protein [Yersinia pestis CO92]
 gi|145209546|gb|ABP38953.1| OmpA-family membrane protein [Yersinia pestis Pestoides F]
 gi|149290633|gb|EDM40709.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125]
 gi|229679566|gb|EEO75669.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|229690853|gb|EEO82907.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697262|gb|EEO87309.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|262361491|gb|ACY58212.1| putative OmpA-family membrane protein [Yersinia pestis D106004]
 gi|262365418|gb|ACY61975.1| putative OmpA-family membrane protein [Yersinia pestis D182038]
 gi|270335371|gb|EFA46148.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|270336084|gb|EFA46861.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294353329|gb|ADE63670.1| putative OmpA-family membrane protein [Yersinia pestis Z176003]
 gi|320013943|gb|ADV97514.1| putative OmpA-family membrane protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 578

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|332665133|ref|YP_004447921.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333947|gb|AEE51048.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 143

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     E I  L K  + +       ISI GHTD         + W LS  R+ + 
Sbjct: 38  FGGGSHYIDQEQIDALYKWLDGIPEVDSHDISIHGHTDN--IGGAEYNQW-LSQMRSDNT 94

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            Q L+  G+  + +  I  F        +        NRR+DI+V
Sbjct: 95  LQKLVDKGLRTE-MISIRDFGQFNPLFDNSTWEGRRKNRRVDIIV 138


>gi|332528553|ref|ZP_08404541.1| peptidoglycaN-associated lipoprotein [Hylemonella gracilis ATCC
           19624]
 gi|332042064|gb|EGI78402.1| peptidoglycaN-associated lipoprotein [Hylemonella gracilis ATCC
           19624]
          Length = 189

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
           SI D      FD  SS   PE   V++     +  +    ++I GH D    R     N 
Sbjct: 78  SIADVAKLVYFDYDSSAIKPEFRAVIEAHARFMQSNPARSVTIAGHADE---RGGTEYNL 134

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            L   RA +  Q+L+  GV+  +I  IS G     ++ +++   + NRR +I
Sbjct: 135 ALGQRRADAVRQMLVLLGVNSSQIETISFGKEKPAVRGSNEAAWAKNRRAEI 186


>gi|296162992|ref|ZP_06845769.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295886786|gb|EFG66627.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 248

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S++  P     L     V         +++ G+TDA+        N  LS  RA +
Sbjct: 145 FATDSAMLSPIAKKNLDHFMSV-NQGINLHRLTVVGYTDAT---GSEAHNLNLSQARAAA 200

Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338
             Q L   G+  D+ +++  G A      A+      NRR+D+ V
Sbjct: 201 VVQYLRDGGLHVDQFVARGLGSADPVASNATAEGRMQNRRVDVRV 245


>gi|127512084|ref|YP_001093281.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126637379|gb|ABO23022.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 234

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
              F  +S+    +    L K+ + L+ S   +++ GHTD          N  LS  RA 
Sbjct: 128 RVYFAFASAEVSIDQWPQLAKVRDFLSASDARLTLVGHTDNI---GSEAVNLSLSRQRAE 184

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVEDR 341
              Q+ ++  GV  +R+S ++  A   +     P   + NRR++ +VE R
Sbjct: 185 RVKQIFVQDYGVKAERLSIVAKGASQPVTDNFGPGERALNRRVEFIVEAR 234


>gi|59714347|ref|YP_207122.1| outer membrane porin F [Vibrio fischeri ES114]
 gi|197336792|ref|YP_002158803.1| outer membrane porin F [Vibrio fischeri MJ11]
 gi|59482595|gb|AAW88234.1| outer membrane porin F [Vibrio fischeri ES114]
 gi|197314044|gb|ACH63493.1| outer membrane porin F [Vibrio fischeri MJ11]
          Length = 202

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 226 ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +   D+++   +F   SS   P     ++ + E L    E  I ++G   AS   N    
Sbjct: 70  VEHSDKKDLKILFANDSSEISPIFKTEIRTMAEFLEEYPETSIQLQGF--ASQQGNAEY- 126

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           N RLS  RA +    L++ GV   RI  I GF    L    D    ++ NRR+
Sbjct: 127 NIRLSELRAAAVRVALIEYGVDPQRIETI-GFGDTLLTAKGDSAVSHALNRRV 178


>gi|170720302|ref|YP_001747990.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169758305|gb|ACA71621.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 324

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I + L        I + GH+D          N   S  RA +
Sbjct: 179 FPGGGIDLDAAARARLDVILDYLQADPTVNHIELNGHSDN---SGNRLTNRDTSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
               L   GV E++I+ +           ++     + NRR++I ++ 
Sbjct: 236 VADYLKAHGVPEEQIT-VRFHGERYPLAKNNSAANRARNRRVNIELDR 282


>gi|262341165|ref|YP_003284020.1| OmpA/MotB domain-containing protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272502|gb|ACY40410.1| OmpA/MotB domain-containing protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 413

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD       P ++ ++ +I E++          I G+TD+         N  LSL RA 
Sbjct: 318 LFDLGKFALTPRSLSIVNEIAEIIINSLPNSKFYIDGYTDS---HGKLSYNKTLSLKRAN 374

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           S ++ L+  GV   RI  + G    + K          RR++I +
Sbjct: 375 SVFEALISKGVDSSRIE-VRGLVGGKYKKKG-------RRVEITI 411


>gi|163783062|ref|ZP_02178057.1| hypothetical protein HG1285_00765 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881742|gb|EDP75251.1| hypothetical protein HG1285_00765 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E + +L ++ + L  +    + I G TD          N +L++ RA + 
Sbjct: 245 FDFDKYSIRREYVPILNEVVKTLKENEFVKVRIEGFTD---IIGPKEYNEKLAMKRAEAV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            + L++ G+ ED+I  I GF   R   +++       NRR++ +V   Q
Sbjct: 302 KRYLVEKGIPEDKID-IVGFGKERFIASNEDKIGRLTNRRVEFIVIKLQ 349


>gi|104780417|ref|YP_606915.1| OmpA/MotB family outer membrane protein [Pseudomonas entomophila
           L48]
 gi|95109404|emb|CAK14104.1| putative outer membrane protein, OmpA/MotB family [Pseudomonas
           entomophila L48]
          Length = 325

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +           L  + + L        I + GH+D          N   S  RA +
Sbjct: 179 FPGAGIELDAAGRARLDVVLDYLKADPSVNHIELDGHSDN---SGNRLTNRDTSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
             + L   GV ED+I+ +           ++     + NRR++I ++ 
Sbjct: 236 VAEYLKAHGVPEDQIT-VRFHGERYPLAKNNSAANRARNRRVNIQLDR 282


>gi|83309701|ref|YP_419965.1| Outer membrane protein and related peptidoglycan-associated protein
           [Magnetospirillum magneticum AMB-1]
 gi|82944542|dbj|BAE49406.1| Outer membrane protein and related peptidoglycan-associated protein
           [Magnetospirillum magneticum AMB-1]
          Length = 378

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +   PE   VLQ+       +    I +  HTD       A+ N  LS  R  +
Sbjct: 276 FFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTD---LSGSAKYNQALSEKRGAA 332

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
               L + G+   +I  ++ G     +          NRR++I++
Sbjct: 333 VKAQLEQLGIPASQIVVVAKGKTSPMVPTPDGVREPQNRRVEIIL 377


>gi|120597137|ref|YP_961711.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557230|gb|ABM23157.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L  +      + GHTD    +     N  LS  RA +
Sbjct: 374 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 430

Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +      A+D     NRR+++++   +
Sbjct: 431 VIKQLNETFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 480


>gi|301156596|emb|CBW16067.1| outer membrane protein A (3a;II*;G;d) [Haemophilus parainfluenzae
           T3T1]
          Length = 361

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      +++ G+TD          N +LS  RA S 
Sbjct: 248 FAFGKANLKPQAKATLDGIYGEIAQINNANVAVAGYTDRI---GKDAPNVKLSQRRADSV 304

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338
              L+  GV    IS +  G A+       D +            +RR++I V
Sbjct: 305 ANYLVAKGVPAQSISAVGHGKANPVTGSTCDAVKGRKALIACLAPDRRVEIAV 357


>gi|163747526|ref|ZP_02154876.1| OmpA family protein [Oceanibulbus indolifex HEL-45]
 gi|161379204|gb|EDQ03623.1| OmpA family protein [Oceanibulbus indolifex HEL-45]
          Length = 191

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+   R     N RLS +RA S   V  + G    RI+ + G+      + ++  
Sbjct: 123 ITGHTDS---RASDAYNMRLSYNRANSVAHVANQVG---ARIADVRGYGERMPAVPNNSA 176

Query: 328 N--SANRRIDIL 337
              + NRR++I+
Sbjct: 177 ANMAKNRRVEII 188


>gi|119504265|ref|ZP_01626345.1| peptidoglycan-associated lipoprotein [marine gamma proteobacterium
           HTCC2080]
 gi|119459773|gb|EAW40868.1| peptidoglycan-associated lipoprotein [marine gamma proteobacterium
           HTCC2080]
          Length = 182

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  SS       + +     VL  + + + + GHTD    R     N  L   RA +  
Sbjct: 84  FDFDSSSMTDTARMAVDAHIAVLLSNDDSVRLEGHTDE---RGTREYNLALGERRANAVR 140

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             ++ +GV   RI  IS +         +S+   S NRR+++
Sbjct: 141 DYMVANGVPSYRIESIS-YGEENPVAFGSSEANWSQNRRVEL 181


>gi|66048188|ref|YP_238029.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63258895|gb|AAY39991.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 830

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  I G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAI-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|262275459|ref|ZP_06053269.1| lipoprotein precursor OmpA family [Grimontia hollisae CIP 101886]
 gi|262220704|gb|EEY72019.1| lipoprotein precursor OmpA family [Grimontia hollisae CIP 101886]
          Length = 223

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +   P    +L  I + +  S+  ++I GHTD+         N  L L RA S  
Sbjct: 114 FGFDKASLTPTGKKILAGIVDSITTSSTPLTITGHTDSV---GSHAYNLTLGLKRAESVK 170

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
             L+ +G +  +I  +S     +    ++     + NRR+D++
Sbjct: 171 GYLVDAGKNNAQIKTVSA-GETKPVTTNETAKGRAENRRVDVV 212


>gi|213964024|ref|ZP_03392268.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno]
 gi|213953356|gb|EEB64694.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno]
          Length = 635

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+  V L KI EV+    +  I IR HTD+   R     N  LS  RA S 
Sbjct: 526 FDLNKSDIRPDAAVELAKIVEVMKEYPKMKIDIRSHTDS---RASDAYNLALSDRRAKST 582

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            + ++K G+   R++   G+   RL          ++  + ANRR + +V +
Sbjct: 583 LEWIVKQGIERKRLTA-KGYGETRLVNGCSNGVPCTEEEHQANRRSEFIVVN 633


>gi|330874387|gb|EGH08536.1| OmpA domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 830

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++   ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLTAVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPSELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|256830739|ref|YP_003159467.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579915|gb|ACU91051.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 295

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +PP +    +  +   RL+DL  +    L  LVA   V G        G           
Sbjct: 113 IPPQALAGSILDRLHDRLRDLIAR--DGLQDLVAVQSVPGKSLHVVLAG----------D 160

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +F+KS ++   +    L  +GE+L  +   +S+ GH         +R  W LS+  A  
Sbjct: 161 LLFEKSRAVLRGDVKETLLAVGEILRSAPHALSVVGHAAPGGAAAGSRGPWELSVAMAAD 220

Query: 295 AYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
               L++ +G+  +R+  ++G+   R  +  D   +   R+++++
Sbjct: 221 VADFLIRDAGLPAERML-VAGYGDQRPLVDGDGAGAG-WRVELVL 263


>gi|170023051|ref|YP_001719556.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749585|gb|ACA67103.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 578

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|153946939|ref|YP_001399719.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958434|gb|ABS45895.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
          Length = 578

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|45441186|ref|NP_992725.1| hypothetical protein YP_1360 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595824|ref|YP_070015.1| OmpA family outer membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108806760|ref|YP_650676.1| hypothetical protein YPA_0763 [Yersinia pestis Antiqua]
 gi|145598791|ref|YP_001162867.1| hypothetical protein YPDSF_1507 [Yersinia pestis Pestoides F]
 gi|149366559|ref|ZP_01888593.1| putative exported protein [Yersinia pestis CA88-4125]
 gi|167467063|ref|ZP_02331767.1| hypothetical protein YpesF_04015 [Yersinia pestis FV-1]
 gi|218928612|ref|YP_002346487.1| hypothetical protein YPO1469 [Yersinia pestis CO92]
 gi|229841445|ref|ZP_04461604.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843557|ref|ZP_04463700.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|294503448|ref|YP_003567510.1| hypothetical protein YPZ3_1338 [Yersinia pestis Z176003]
 gi|45436046|gb|AAS61602.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589106|emb|CAH20726.1| OmpA family of outer membrane porins [Yersinia pseudotuberculosis
           IP 32953]
 gi|108778673|gb|ABG12731.1| hypothetical protein YPA_0763 [Yersinia pestis Antiqua]
 gi|115347223|emb|CAL20117.1| putative exported protein [Yersinia pestis CO92]
 gi|145210487|gb|ABP39894.1| hypothetical protein YPDSF_1507 [Yersinia pestis Pestoides F]
 gi|149290933|gb|EDM41008.1| putative exported protein [Yersinia pestis CA88-4125]
 gi|229689165|gb|EEO81228.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697811|gb|EEO87858.1| putative exported protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262364848|gb|ACY61405.1| hypothetical protein YPD8_0715 [Yersinia pestis D182038]
 gi|294353907|gb|ADE64248.1| hypothetical protein YPZ3_1338 [Yersinia pestis Z176003]
          Length = 578

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552


>gi|330447990|ref|ZP_08311638.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492181|dbj|GAA06135.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 196

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SS      +  +  +   LA   +  I ++G+  ASP  + A +   LS  RA +
Sbjct: 76  LFANDSSEIPESYMENIANMSAFLAKYPDTHIELKGY--ASPVGSAAYNV-ALSKRRAQA 132

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             Q L+  GVS  RI  + GF       A D    N+ +RR+   V   QG
Sbjct: 133 IRQALITEGVSPARIKTV-GFGDSDPVKADDVEESNALSRRVVAQVVGSQG 182


>gi|213024604|ref|ZP_03339051.1| hypothetical protein Salmonelentericaenterica_19791 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 154

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A+ I +G+L  +       +     R   MF             V+ K    +A
Sbjct: 54  RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 110

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303
                +++ GHTD+ P  +     N  LS  RA     +L   G
Sbjct: 111 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGG 154


>gi|186894908|ref|YP_001872020.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697934|gb|ACC88563.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 581

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 449 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 505

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 506 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 555


>gi|110638113|ref|YP_678322.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280794|gb|ABG58980.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 631

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F  +S     ++I  L+K+   +  +  + + + G+TD       A  N +LS  R
Sbjct: 526 NNIFFQTNSYQLEEKSISELKKLINFIQINPAQRVELAGYTDNV---GTAEANLKLSAMR 582

Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           A + Y  L++ G+    I  K  G A       S+     NRR++I + 
Sbjct: 583 AKAVYDYLIQHGIKPAGITYKGYGAASPVADNNSEEGRQKNRRLEIKIL 631


>gi|229515018|ref|ZP_04404478.1| outer membrane protein [Vibrio cholerae TMA 21]
 gi|229347723|gb|EEO12682.1| outer membrane protein [Vibrio cholerae TMA 21]
          Length = 212

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLVLSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L++    D  ++ NRR+   V   +G
Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198


>gi|162451840|ref|YP_001614207.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161162422|emb|CAN93727.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 628

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
             P +  VL ++ + +  + ++  + ++GHTD +        N RLS  RA +    L+ 
Sbjct: 527 VDPISDEVLYEVRDTIQQNPDIELVEVQGHTDDN---GTEEYNLRLSQQRADAVLSWLVA 583

Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           +GV  +++    G+   +    +        NRR+  ++  R+
Sbjct: 584 AGVPREKLVA-KGYGFEQPVGDNRVKTGRQKNRRVQFVIVKRK 625


>gi|323699159|ref|ZP_08111071.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323459091|gb|EGB14956.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 351

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E + VL++   +L   +     I GHTD++        N  LS  RA S 
Sbjct: 250 FGFDKYQITDEMVPVLEQAKMILEEDTAATYEISGHTDST---GTEAYNQGLSERRANSV 306

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            + L  +GVS DR+    G+     K  +        NRR++I
Sbjct: 307 MKWLTDNGVSADRLEA-KGYGELAPKYDNATKEGRKLNRRVEI 348


>gi|312131594|ref|YP_003998934.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311908140|gb|ADQ18581.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 765

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 21/193 (10%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L   ++++  I+ ++   +     E+   ++ +K     +K + +  S +  +      +
Sbjct: 578 LRSGSEVQIQISDQDGKVIFKRDPERNYELESEK--SGYSKIVENIRSEVRKERKTPQKI 635

Query: 217 FETT--RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             +T  + G +I +        +D  S     +    L+KIGE+L  S E  I +  HTD
Sbjct: 636 HRSTMYKIGDVIRL----ENIYYDNESYKLGAQAKQSLRKIGELLQKSPELAIEVSSHTD 691

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326
               R  A+ N  LS  RA    + L++  +S  RIS + G    +   A       +D 
Sbjct: 692 T---RGSAQANMILSERRAEEVKKFLVQY-ISGHRISAV-GKGESQPVNACGDGVQCTDA 746

Query: 327 MNSANRRIDILVE 339
            ++ NRR +I + 
Sbjct: 747 EHARNRRTEIRIL 759


>gi|209526860|ref|ZP_03275380.1| OmpA/MotB domain protein [Arthrospira maxima CS-328]
 gi|209492731|gb|EDZ93066.1| OmpA/MotB domain protein [Arthrospira maxima CS-328]
          Length = 285

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 9/238 (3%)

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166
           T + + L      ++  YQ    +      +       +      +  +   +    + +
Sbjct: 52  TSSEMPLTEQLLRREPAYQPSFPDRETPRLTPPKASPTSLTPEVQQTLQPQLQQLQQDLN 111

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
                   L         A   ++RLQ + +++++  S    +          +R+G  +
Sbjct: 112 ALIGRTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGSGL 171

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            I+   +  +F+  SS   P   V+L  +   L +    V+ + GHTD S  R     N 
Sbjct: 172 -IMTLPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDDSARRQQ---NL 227

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            LS  +A +  Q L  +          I G+   R      SD     NRRI++ +  
Sbjct: 228 VLSSAQAEAVVQYLSNAVDYQAYHWVAI-GYGMTRPALENTSDINRQLNRRIEVAITP 284


>gi|256820527|ref|YP_003141806.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582110|gb|ACU93245.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 660

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 19/201 (9%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           SL    E+  +   +     + N ++   +    +E   + ++   L  L    +  L  
Sbjct: 468 SLKLIEEQISNKEGTFSFLYTSNCKDEQLIIKTIREGFSSDEQNITLTGLKDAYAEVLLS 527

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264
            + +     +  + ++  + I      +   FD   +   P+    L KI +V+      
Sbjct: 528 PIVEKKPIKIGDDLSKE-LKI------DNIYFDYDKANIRPDAAEQLAKIVKVMEEYPTM 580

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323
            I +R HTD+   R     N  LS  RA S  + L+  G+ +DRI+   G+   +L    
Sbjct: 581 KIDVRLHTDS---RGSDSYNLALSQRRAKSTIKWLIAHGIHKDRITG-KGYGETQLVNGC 636

Query: 324 ------SDPMNSANRRIDILV 338
                 ++  + ANRR + ++
Sbjct: 637 SNGVPCTEEQHQANRRSEFII 657


>gi|325475131|gb|EGC78317.1| OmpA family protein [Treponema denticola F0402]
          Length = 391

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +  L+  +  KG+     +  + I + D R    F       LPE +  +  I E L   
Sbjct: 257 IELLLEKHKEKGIELSNPKNIVKIIMYDIR----FVADMPDVLPEEMGKIDVIAEALLKL 312

Query: 263 T--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                  I GHT      N   D   LS+ RA      + K G+   RI   +G+   R 
Sbjct: 313 GPYTKFLIEGHTADL---NRPEDEKILSVQRAERIADEISKRGIDRSRIM-TAGYGSTRP 368

Query: 321 KIASD--PMNSANRRIDILVED 340
              S+     + NRR++I V  
Sbjct: 369 VAPSNNETNMAKNRRVEITVIR 390


>gi|156975609|ref|YP_001446516.1| hypothetical protein VIBHAR_03342 [Vibrio harveyi ATCC BAA-1116]
 gi|156527203|gb|ABU72289.1| hypothetical protein VIBHAR_03342 [Vibrio harveyi ATCC BAA-1116]
          Length = 230

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E T  G LI+         F        P    VL  +   LA +   +++ GHTD   +
Sbjct: 106 EVTDKGKLIA------RVHFAFDRFNLTPLARDVLSSVARQLAQTDYQVTVEGHTD---W 156

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N  L  +RA S  + L   GVSE + + +  F        ++     S NRR D
Sbjct: 157 IGTKAYNQTLGHNRAKSTARELHYYGVSEQK-TTLKSFGESEPIATNNTSSGRSKNRRAD 215

Query: 336 ILV 338
           + +
Sbjct: 216 VYI 218


>gi|254302748|ref|ZP_04970106.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322940|gb|EDK88190.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 182

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD             L  + + L  + +  I I G+TD
Sbjct: 57  EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 116

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +  +   S N
Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPAATNQTEAGRSKN 172

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 173 RRVEFII 179


>gi|90022072|ref|YP_527899.1| putative outer membrane protein [Saccharophagus degradans 2-40]
 gi|89951672|gb|ABD81687.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 322

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 15/180 (8%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
               +  LS+   +A+K+K      A++    LS +      +  L      G+L +  D
Sbjct: 119 AERMMAELSEGNEVAIKQKVWFNSEAEEAELALSSIGFKKAYRRYLDCLA--GLLPANFD 176

Query: 231 QRNT--PMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDN 284
           Q       F+   + +  P     L KI  ++ H    +    I GHTD++       +N
Sbjct: 177 QLKRTALYFEPGETDVLSPGLQRQLDKILALVKH-DNKLRMFYIDGHTDSN---GDRAEN 232

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             LS  RA      L + G+ ED I  I          ++      + NRR+ + +E  +
Sbjct: 233 LELSKTRAELVSTYLKRRGIPEDWIV-IRWHGERYPVASNATVNGRARNRRVTVRLERIE 291


>gi|313672972|ref|YP_004051083.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939728|gb|ADR18920.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 201

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S     E+I + ++I   + +     + I GHTD+         N+ L L RA S 
Sbjct: 99  FETGSDQLTEESINMTKEIINEIKNRENPELEIIGHTDSV---GEKEANYLLGLKRAESV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
             +L   GV      ++S        I    +     NRR++++V+
Sbjct: 156 KNILTSQGVDTGMEIELSSLGEDNPLIPMPDETPEPKNRRVEVVVK 201


>gi|78223039|ref|YP_384786.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78194294|gb|ABB32061.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 523

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 89/279 (31%), Gaps = 25/279 (8%)

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
           +TA +G+     P  R  Q    L   +      +   I  ++        +     L  
Sbjct: 245 LTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPANKLEV 304

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           + +    + ++    +       +     S    E   L    +E  LA +    L++ A
Sbjct: 305 TVEPGKEEITIKPYGQVTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTLENSA 364

Query: 197 -----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN--------TPMFDKSSSI 243
                 ++         D   + V   + R G    I D              FD     
Sbjct: 365 LEYTLARLEGITPLYSVDVKGQNVQVASARDG---DIADSMKVYRKFRFPDVTFDFDQWS 421

Query: 244 PLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM- 300
              E    + ++ E++   T+ +   + G+TD     +    N  LSL RA S    L+ 
Sbjct: 422 LSAEGKKSISEVAELVRKDTKWVYLRVDGYTDN--IGSTDY-NMDLSLKRAVSVASYLVA 478

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           + G+   +I  I G    +    +   +    NRR +IL
Sbjct: 479 REGIDAAKIF-IKGLGKSKPLADNATSDGRKLNRRCEIL 516


>gi|326563201|gb|EGE13469.1| OmpA family protein [Moraxella catarrhalis 12P80B1]
          Length = 551

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           +     D+ K +   +N      + E    +     + D  +  ++ ++ +   + V+  
Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
             +     +   II+      F   S+    E   +L    E L    E  + I GHTD 
Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333
                    N  LS  RA +  + L+  GV+ +R+ ++ + F +     A++     NRR
Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLLSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523

Query: 334 IDILV 338
           I+ ++
Sbjct: 524 IEFVL 528


>gi|228018089|gb|ACP52723.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018119|gb|ACP52738.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018121|gb|ACP52739.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018123|gb|ACP52740.1| fibronectin-binding protein [Campylobacter coli]
 gi|228018137|gb|ACP52747.1| fibronectin-binding protein [Campylobacter coli]
          Length = 224

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P     +++I ++L  +    +I  GHTD     + +  N +LS  RA S 
Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + L K GV + RI  + G+   + + ++D 
Sbjct: 193 AKKLEKFGVDKSRIQTV-GYGQDKPRSSNDT 222


>gi|289207752|ref|YP_003459818.1| peptidoglycan-associated lipoprotein [Thioalkalivibrio sp. K90mix]
 gi|288943383|gb|ADC71082.1| peptidoglycan-associated lipoprotein [Thioalkalivibrio sp. K90mix]
          Length = 188

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 230 DQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282
           D  ++P+      F+        + + +L+     L+ ++   + + GHTD    R    
Sbjct: 71  DDPDSPLAERLVYFEFDRDEVQSQYMDMLEAHAAYLSQNSGARLRLEGHTDE---RGTRE 127

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
            N  L   RA S  ++L  +G S+D+I  IS +          ++   + NRR++++ E 
Sbjct: 128 YNLGLGERRAQSVRRILTLNGASDDQIEVIS-YGEEMPVAFEQNEEAWAKNRRVELVYES 186

Query: 341 RQ 342
           R+
Sbjct: 187 RR 188


>gi|149377921|ref|ZP_01895649.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
 gi|149357811|gb|EDM46305.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
          Length = 402

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 20/288 (6%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           D+T+  +   F     + ++    + +     E +   +  L +    ++   D K    
Sbjct: 131 DETRVNVGAGFRYNVSDSVSIRADLREFHGIDESTFDTQATLGLSFAFSRTVADSK---- 186

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
              ++    +N+    S  Q +          +   +D                     +
Sbjct: 187 PAPRKAADSDNDGVPDSRDQCAGTPSGVSVDSNGCERDNDGDGVANSMDQCPNTPAGASV 246

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +            + + A +   T +G   D +    + ET  T   I +  Q     F 
Sbjct: 247 NSRGCELDSDNDGVVNSADQCPGTTAGADVDAMGCEGVTETVET---IELNVQ-----FP 298

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            +SS+        ++++   +    E  + I GH+D+        + + LS  RA +   
Sbjct: 299 TNSSVIGNAFDNEIRRVANFMLEYPETNVEIAGHSDS--IGEAEYNRF-LSQRRAEAVAT 355

Query: 298 VLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            L  + G+SEDR++ + G+       ++D     + NRR++  ++ R+
Sbjct: 356 RLTDALGISEDRVNAV-GYGESEPVASNDTAAGRAENRRVEARIQVRR 402


>gi|311696306|gb|ADP99179.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 402

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNI 280
            G+  +I        F  +SS+        ++++ + +  + E I  I GH+D+   R  
Sbjct: 282 EGVTETIQTFTIEVQFPTNSSVIGNAYDEEIRRVADFMQENPETIVEIAGHSDS---RGD 338

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
           A  N  LS  RA +    L    GV   R+  + G+   +   +++     +ANRR++  
Sbjct: 339 ADYNQFLSQRRAEAVAGRLTGPLGVDPARVEAV-GYGEEQPIASNNTADGRAANRRVEAR 397

Query: 338 VEDRQ 342
           ++ R+
Sbjct: 398 IQVRR 402


>gi|213970767|ref|ZP_03398891.1| OmpA domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301383000|ref|ZP_07231418.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059103|ref|ZP_07250644.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302133343|ref|ZP_07259333.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924439|gb|EEB58010.1| OmpA domain protein [Pseudomonas syringae pv. tomato T1]
          Length = 830

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++   ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNARDLAAVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E    L   
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNLDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVRCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|157377275|ref|YP_001475875.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157319649|gb|ABV38747.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 201

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           +F   S    P+    ++ I   +      V++I GH      +  + D N  LS +RA 
Sbjct: 78  LFANDSYYIDPQYYDQIEVIATFMTDYPNTVVTIEGHCS----KTGSYDHNLTLSQNRAN 133

Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +    L  + G++ DR++ I G++  R    S+   +   NRR+
Sbjct: 134 AVTTTLTEQFGINPDRLTAI-GYSFDRPVDMSETSIAHTRNRRV 176


>gi|90577378|ref|ZP_01233189.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           angustum S14]
 gi|90440464|gb|EAS65644.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           angustum S14]
          Length = 298

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           D R+  + F     +       +L  +   L H      + I GHTD          N +
Sbjct: 177 DARDVVLQFQLGQRVVSSSQKQILADLASYLKHDKNVKRVLIDGHTDNV---GSNVANLQ 233

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           +S  RA     +L ++GV    + ++           ++  +  + NRR+ I
Sbjct: 234 ISKIRADDVASILRENGVRSS-LIEVRSHGSRYPVANNNTQHGKAKNRRVTI 284


>gi|78189866|ref|YP_380204.1| OmpA domain-containing protein [Chlorobium chlorochromatii CaD3]
 gi|78172065|gb|ABB29161.1| OmpA domain protein [Chlorobium chlorochromatii CaD3]
          Length = 205

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F+  S+       + LQ+   +L     E I I GH D    R  +  N  L   R
Sbjct: 98  GDIFFEYDSATLDESAQMQLQQNAALLQQFIVESIQIEGHCD---IRGTSEYNLALGERR 154

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           A +A + LM+ GV   R+  +S F   R     +  +  + NRR+  ++
Sbjct: 155 ATTAKEYLMRLGVPASRLETVS-FGEERPFDNGNSEDAWAKNRRVHFVL 202


>gi|19703678|ref|NP_603240.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713798|gb|AAL94539.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 172

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD             L  + + L  + +  I I G+TD
Sbjct: 47  EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 106

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 107 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 162

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 163 RRVEFII 169


>gi|288927607|ref|ZP_06421454.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330441|gb|EFC69025.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 676

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D       PE+   L ++ ++L  +  V I +  H D   +R     N  LS  R
Sbjct: 509 DNIFYDLDKYTLRPESKQALDELVKLLNENPNVTIELSAHCD---YRGTPEYNKVLSQHR 565

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +  Q L+ +G++  R++ + G+   + K
Sbjct: 566 ANAVVQYLIDAGIAPQRLTPV-GYGKEKPK 594


>gi|167623616|ref|YP_001673910.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353638|gb|ABZ76251.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 289

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   +         + K+ E LA+   V  + I  +TD+   R+    N R+S  RA S
Sbjct: 184 YESGGTELTRYAKSQIAKVQEYLAYDKNVDLVLIDAYTDSYGGRSA---NQRVSEQRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             ++ + SG+ ++RI  + G    R   ++      S NRR+ I +
Sbjct: 241 VKELFVASGIGQNRIHTL-GHGERRHVASNQTIDERSRNRRVVIRI 285


>gi|332663816|ref|YP_004446604.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332332630|gb|AEE49731.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 406

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 20/209 (9%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             Q       ++   +++      +     +  K      PP+  E     K  ++  D 
Sbjct: 213 KEQPEVVSTPTVKPPTQRIDTPKTNNGGRPTPGKTPPVNNPPVVAENNTTTKNPEKKPDT 272

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI-SIIDQRNTPMFDKSSSIPLPETIVVLQK 254
                 ++       + K  L  T    + I SI        F  + +I    +   L K
Sbjct: 273 NSTPPKSIDNPDFSTLKKSDL--TMGQTLRIPSIT-------FAVNDTILSRASYPNLDK 323

Query: 255 IGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   +  +  ++  + GHT  +        N RLSL RA +    L+K GV  +R  ++ 
Sbjct: 324 LLTFMNTNPAIVLEVGGHT--NGLCADDYCN-RLSLRRARAVVDYLVKKGVKPERF-QVK 379

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVED 340
           G+   +    + +DP    N+R++I + D
Sbjct: 380 GYGKTQPISTVKNDP---KNQRVEIKILD 405


>gi|330871941|gb|EGH06090.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 666

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 375 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 434

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 435 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 494

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 495 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 551

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 552 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIMIAGHADQL---GDPQSNMQVSKQRA 608

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 609 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 662


>gi|170724840|ref|YP_001758866.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810187|gb|ACA84771.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 201

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F   S    P     ++ I   +       ++I GH   +        N  LS 
Sbjct: 73  QELKILFPNDSYYIDPMYYDQVEIIATFMRQFPNTKVTIEGHCSKT---GSYEHNLALSQ 129

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +RA +    L  + G+  DR++ I G++  R    S+   +   NRR+
Sbjct: 130 NRANAVTTALSERFGIEPDRLTAI-GYSFDRPIDLSETAMAHTRNRRV 176


>gi|331018731|gb|EGH98787.1| OmpA domain-containing protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 830

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++   ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNARDLAAVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E    L   
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNLDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  + G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVRCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|312129228|ref|YP_003996568.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311905774|gb|ADQ16215.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 705

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 29/277 (10%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            YF+    ++              +  S   ++ S  + I+  S++ K+  + Q +    
Sbjct: 452 AYFSSAKNSMGLDDLFKVKLFPSIQPESVVLMEFSFVDEISGQSIEPKVSISPQVEWVWD 511

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            E  IF         +   + +             ++++ + K+E Y    + +E I   
Sbjct: 512 EETKIFKTIFQPGQTYELKAESSGYPSFSQSLDFREVKEYLEKKEVYKWRKIGQESIAQT 571

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             K    +       ++  +V +   K VL E                  FD+S +    
Sbjct: 572 APKTVNAE-----PESVKDMVIEAGKKIVLREV----------------YFDQSKAELRQ 610

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-V 304
           E+ V L +I +++    + VI + GHTD       A  N++L+  R  +    L++ G +
Sbjct: 611 ESFVELDRIKKIMMEHPDMVILLEGHTDNQ---GDANLNFKLAEQRILNVKNYLIEDGQI 667

Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            E+RI ++  +  +R  + +  +     NRR++  + 
Sbjct: 668 KEERI-QLKSWGQYRPLVKNTTEEERRKNRRVEFTIL 703


>gi|189219501|ref|YP_001940142.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
 gi|189186359|gb|ACD83544.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
          Length = 528

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 225 LISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFR 278
              + D    P    F   ++    +  V +Q++   L+ +      + + G TD     
Sbjct: 408 RTLVKDSTRVPFDIRFRFGTAELDNKGRVDIQRLARFLSEAENSDKGVLLIGFTDNV--- 464

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
                N  LSL+RA S  + L   G++   +  ++G        ++  +     NRR+++
Sbjct: 465 GSHTYNLGLSLERAQSVAKALESRGIT---VVNVAGAGEEMPVASNESEEGREKNRRVEV 521

Query: 337 LVEDRQ 342
            +  ++
Sbjct: 522 WLCPKK 527


>gi|218130801|ref|ZP_03459605.1| hypothetical protein BACEGG_02395 [Bacteroides eggerthii DSM 20697]
 gi|317474322|ref|ZP_07933598.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|217987145|gb|EEC53476.1| hypothetical protein BACEGG_02395 [Bacteroides eggerthii DSM 20697]
 gi|316909632|gb|EFV31310.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 225

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS    +    L+ + ++L   +T  I+I GHTD          N ++S +RAY+
Sbjct: 112 LFAFNSSTLSNDAKASLRDLAKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               L   GVS  +  ++ G  ++          S NRR+ I 
Sbjct: 169 VENYLQDCGVSPSQFKQVEGVGYNE--YDESLSASQNRRVVIF 209


>gi|89070199|ref|ZP_01157527.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
 gi|89044215|gb|EAR50366.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
          Length = 623

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWR 286
           I D R    FD  S+    ++  V+  I EVL   +   I + G+TD+         N R
Sbjct: 489 ISDTRKIT-FDPGSADIDGDSQRVVDDIAEVLRQCTDLEIEVAGYTDSQ---GREEMNQR 544

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
           LS  RA +    L    V       + G+        +D      ANRRI+
Sbjct: 545 LSQQRAEAVLAALRLRRVPVGAFRAV-GYGEAEPIADNDTAEGREANRRIE 594


>gi|119357899|ref|YP_912543.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355248|gb|ABL66119.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 417

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD   S  +  +   L  IGE+L       + I G+TD        + N +LS  R
Sbjct: 310 DRLVFDTGKSTLMATSQEQLNNIGEILKAYPAVELKIGGYTDNV---GDPQANKKLSQAR 366

Query: 292 AYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASDPMNSANRRID 335
           A +    L+K G+   R++   G+   H     A++     NRR+D
Sbjct: 367 AETVMAELVKLGIDNIRLAA-EGYGIEHPVADNATEEGRQQNRRVD 411


>gi|326794456|ref|YP_004312276.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545220|gb|ADZ90440.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 422

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS    E++ VL++    +       + ++GH+        A  N RLS  RA S 
Sbjct: 311 FANNSSEVKSESLPVLEEFATAINSYDLKNVEVQGHSS---LDGSASYNLRLSEARAQSV 367

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV--EDRQG 343
             VL+K  GV    I+   G+   +  I   S+  N+ NRR+  ++  ED++ 
Sbjct: 368 ADVLVKQFGVDASVITA-KGYGETQPVINEISNEANTVNRRVVAVIQYEDKKA 419


>gi|313676000|ref|YP_004053996.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312942698|gb|ADR21888.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 228

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 18/139 (12%)

Query: 204 SGLVADNIVKGVLFETTRTG----ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
             +     +  ++F    +G    + + I        F +S +  L  +   L K+  ++
Sbjct: 94  EEIAVKEDMDQLVFSLMPSGAGAILRLDIN-------FKQSKAEILENSYGELDKLLNMM 146

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  I + GHTD   FR  A  N RLS  R  +    L    VS DRI K   F   
Sbjct: 147 KEYPNMEIQLEGHTD---FRGSASANMRLSEKRVNAVKSYLTSKNVSSDRI-KTKAFGGT 202

Query: 319 RLKIASDPMNSA--NRRID 335
           +         +   NRR++
Sbjct: 203 QPLSRESTEEAKLNNRRVE 221


>gi|149202108|ref|ZP_01879081.1| OmpA family protein [Roseovarius sp. TM1035]
 gi|149144206|gb|EDM32237.1| OmpA family protein [Roseovarius sp. TM1035]
          Length = 179

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+         L++  +     +   +I GHTD+   R     N  LSL RA S 
Sbjct: 81  LFATDSARIHASGQQRLREFFQQAGAVSY--TIVGHTDS---RASDEYNMDLSLRRANSV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             V   SG S   I+ + G+     K +++     + NRR++IL
Sbjct: 136 AAVARSSGAS---IADVRGYGERVPKASNNTAEGMAQNRRVEIL 176


>gi|1000844|gb|AAA78948.1| 18.5 kDa protein [Bartonella bacilliformis]
          Length = 171

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS+   +   +L +  E L       I I GH D    R     N  L   R
Sbjct: 31  DRVFFSLDSSVIEADAQRILVRQAEWLLLYPHHTIMIEGHADD---RGTREYNLALGQRR 87

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED---RQG 343
           A +    L+  GVS  R+  +S +   R     D ++  + NRR+ I +     R+G
Sbjct: 88  AIAVRDYLVSLGVSPQRMKTMS-YGKERPVAVCDDISCWNQNRRVVISITSGAVRKG 143


>gi|260432166|ref|ZP_05786137.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415994|gb|EEX09253.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 299

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQR-------NTPMFDKSSSIPLPETIVVLQ 253
             +     D     ++ E T  G    + D         +   F+  +          L 
Sbjct: 152 QMIRVTPQDAKPPPLVVEETVQGAGGLLSDLARDGHVILDDLSFESGAVALGEGPFASLA 211

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY-QVLMKSGVSEDRI-S 310
            +   L+ +    +++ GHTD +      + N  +S  RA +   +++   GV  +R+ +
Sbjct: 212 LLAGYLSDNPGVRLALVGHTDDT---GDLQANINVSTRRAQAVRARLIEAHGVDPERVEA 268

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVE 339
           +  G+       A+      NRR++ ++ 
Sbjct: 269 QGVGYLSPLTSNATPEGRELNRRVEAVLL 297


>gi|189502647|ref|YP_001958364.1| hypothetical protein Aasi_1325 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498088|gb|ACE06635.1| hypothetical protein Aasi_1325 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 656

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 226 ISIIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282
           I I   +      F         ++ + L ++   L  + ++ I + GHTD     +   
Sbjct: 537 IEINQTKILKNVYFKYDEYSLNKKSYIELDRLVAFLKTNPDITIELEGHTD--HIGSDEY 594

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334
            N +LS  RA + Y+ L+++G++ DR++   G+   R    +D       NRR+
Sbjct: 595 -NQQLSTKRAKAIYEYLLQAGIANDRVN-YKGYGKTRPIAPNDSQENQQLNRRV 646


>gi|220921404|ref|YP_002496705.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219946010|gb|ACL56402.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 213

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+      + V++ +G  LA    ++ +I I GHTDA   +   R N  LS  RA 
Sbjct: 102 FAYNSATIGRTALPVVKMLGATLARPQLASSIILIVGHTDA---KGSDRVNQLLSERRAE 158

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  Q ++++ GV    +  + G+   RLK  ++P+  ANRR+ 
Sbjct: 159 AVKQYIVQNYGVPAGNLVAV-GYGKSRLKDPANPLAPANRRVT 200


>gi|328468979|gb|EGF39939.1| putative outer membrane protein [Vibrio parahaemolyticus 10329]
          Length = 206

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ E L       I ++G+   +     ++ N  LS  RA
Sbjct: 81  RVLFANDSDEINPVFRRQIRELSEFLKDYPTTSIELQGYASKT---GDSKHNQDLSERRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+  +R+ +I GF    L         ++ NRR+   V   +G
Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189


>gi|157960193|ref|YP_001500227.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157845193|gb|ABV85692.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 201

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F   S    P+    ++ I   +         I GH   +      + N  LS 
Sbjct: 73  QELKILFANDSYYIDPQYYPQVEVIASFMQKFPNTQAVIEGHCSKT---GSHQHNQVLSQ 129

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +RA +   +L  + G+   R+S + G++  R    +   ++   NRR+
Sbjct: 130 NRANAVSSLLAERFGIDSGRLSAV-GYSFDRPIDPTHTASAHKINRRV 176


>gi|224438536|ref|ZP_03659456.1| hypothetical protein HcinC1_11101 [Helicobacter cinaedi CCUG 18818]
 gi|313144962|ref|ZP_07807155.1| membrane-protein map18 [Helicobacter cinaedi CCUG 18818]
 gi|313129993|gb|EFR47610.1| membrane-protein map18 [Helicobacter cinaedi CCUG 18818]
          Length = 157

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +FD        +    L+K    L  +   + + GHTD+  + + A  N+ L   RA 
Sbjct: 52  KVLFDFDKYDIRQDMEDGLEKSVAALKSTGAKVVLEGHTDS--YGSDAY-NYALGTKRAN 108

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM-NSANRRID 335
           +    L   GVS  +I  +S +   +        P  N  NRR++
Sbjct: 109 AVKNALTTRGVSASQIKTVS-YGESKPACTSGDTPECNQENRRVE 152


>gi|167644957|ref|YP_001682620.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167347387|gb|ABZ70122.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 190

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284
           S++   ++  F  +     PE    L      L    + +   I+G TDA       + N
Sbjct: 77  SVVLSDDSVKFPLNRHELSPEAEQRLADFASKLKGDNKNVYLEIQGFTDA---SGDPQYN 133

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
             L  +RA +  + L K GV  +R++ IS +        +D     + NRR+ I V 
Sbjct: 134 ETLGSERAETVRKFLSKQGVPLNRMATIS-YGEDDPVAPNDNPDGRAQNRRVVIQVL 189


>gi|84394101|ref|ZP_00992836.1| protein F-related protein [Vibrio splendidus 12B01]
 gi|84375292|gb|EAP92204.1| protein F-related protein [Vibrio splendidus 12B01]
          Length = 211

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+ P P     L  +G  L+   +  + I GHTD +      R N  LS  RA   
Sbjct: 107 FKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNT---GSDRVNAPLSELRAKEV 163

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L  + VS   I    GF  +      AS    + NRR+++++
Sbjct: 164 KARLESNYVSSRAIY-TRGFGEYVPACTNASPQGKACNRRVELML 207


>gi|311694109|gb|ADP96982.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 305

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLS 288
           QR+   F   S+        +L  I   +    + E I + GH+D+        DN  LS
Sbjct: 182 QRSRVPFASGSTQLSDADRQLLDNIVAYVNADSTVERIFVDGHSDSI---GSRIDNRALS 238

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            DRA      L  SG+ E+ +  +         +++ P +  NRR +I ++ 
Sbjct: 239 EDRANVVADYLKASGIDEN-MITVRAHGDQYP-VSNRPAD--NRRTNIRLQR 286


>gi|86145932|ref|ZP_01064260.1| putative outer membrane protein [Vibrio sp. MED222]
 gi|85836387|gb|EAQ54517.1| putative outer membrane protein [Vibrio sp. MED222]
          Length = 204

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   P  +  ++++   L       I ++G+  AS   N    N +LS  RA +
Sbjct: 85  LFANDSAEIKPVFLSQIRQMAAFLKRYENTSIQLQGY--ASKVGNAEH-NLKLSEKRADN 141

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSANRRI 334
             + L+ +G+   R   + G+     +    +  ++ NR++
Sbjct: 142 VRRALISNGIPPSRAYTV-GYGDVGFRDNDTETNHALNRKV 181


>gi|298374715|ref|ZP_06984673.1| OmpA family protein [Bacteroides sp. 3_1_19]
 gi|298269083|gb|EFI10738.1| OmpA family protein [Bacteroides sp. 3_1_19]
          Length = 658

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 85/279 (30%), Gaps = 17/279 (6%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
              + ++  YF   G   M       D     + S+      ++   I     D  I   
Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWNVENLGAPINSMGDDFGITFA 396

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            ++++     N                ++T   E   +      +E +  +        +
Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFELPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232
                     +  L+ D+   + ++  G +  N       E      ++           
Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516

Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
             +   +D   +   PE+   L ++ ++L  +  V I +  HTD    +   + N RL+ 
Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            RA S    L+  G+   R+    G+     K  +  M 
Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611


>gi|170750721|ref|YP_001756981.1| peptidoglycan-associated lipoprotein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657243|gb|ACB26298.1| peptidoglycan-associated lipoprotein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 164

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +++  +   F+  S+   P     L K    L         I GH D    R     N+ 
Sbjct: 49  VVNIGDRVFFESDSTDLTPTATATLDKQAAWLQRYPRYTFIIEGHADE---RGTREYNFS 105

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           L   RA +    L   G++  R+  +S +   R     + ++  S NRR  I+++   G
Sbjct: 106 LGARRAQAVNDYLATRGIAASRMRTVS-YGKERPVAVCNDISCWSQNRRAVIVLDRGAG 163


>gi|254230012|ref|ZP_04923412.1| outer membrane protein [Vibrio sp. Ex25]
 gi|151937453|gb|EDN56311.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 288

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGE 257
           +   LS          +    +   ++  I    N    F   S+   P+ +  L +   
Sbjct: 129 LDYVLSQTTCTP-PDDIEALRSDLNVVAEIYALLNIDNQFAVDSAEINPKYMGHLAEAAY 187

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS--KISG 314
           +L       + + GH D          N +L+  RA    + L   G++ +R++   +  
Sbjct: 188 ILRDHPNLTLVVTGHAD---VTGAPDYNQKLAQARAEQVKRYLTVFGITSERVTTKSV-- 242

Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338
                     +       NRR+ I V
Sbjct: 243 -GDSLPLYEGETPAVRLTNRRVSIEV 267


>gi|242279943|ref|YP_002992072.1| peptidoglycan-associated lipoprotein [Desulfovibrio salexigens DSM
           2638]
 gi|242122837|gb|ACS80533.1| peptidoglycan-associated lipoprotein [Desulfovibrio salexigens DSM
           2638]
          Length = 196

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 15/183 (8%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G    K        +      +    + + L  + + RL+         L         K
Sbjct: 19  GTGCSKKQVESSPASPAVEERMAQQQENEQLKSEEQARLERERALQEQALEEERQAAAAK 78

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
                         +++  N   FD  S     E   +LQ+  E+L     V + I G+ 
Sbjct: 79  KEFDNA--------VVELGNMVHFDFDSFEIKQEYRPLLQQKAEILKKYDNVTMVIEGYC 130

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA 330
           D    R     N  L   RA +AY+ L+  GV+ +R+S +S F          ++   + 
Sbjct: 131 DD---RGTEEYNLALGERRARAAYEFLILLGVTPERLSIVS-FGEEDPLDPGQNETAWAK 186

Query: 331 NRR 333
           NRR
Sbjct: 187 NRR 189


>gi|269103007|ref|ZP_06155704.1| peptidoglycan-associated outer membrane lipoprotein [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162905|gb|EEZ41401.1| peptidoglycan-associated outer membrane lipoprotein [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 181

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
            +   I    + Q  T  F   ++   PE   +L+   E L       + I GH D    
Sbjct: 60  MSEQEIRNQQLRQETTVFFKFDNAEIQPEYQAMLEAHAEYLRDHPAVKVIIEGHADE--- 116

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +  + L   GV   ++S +S +   +  +   +D   + NRR
Sbjct: 117 RGTPEYNIALGERRAAAVVKYLQALGVPASQMSIVS-YGEEKPLVLGHTDADYAKNRR 173


>gi|261884038|ref|ZP_06008077.1| flagellar motor protein MotB [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 85

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
          KK+    +  +   SW + Y+D MT+L+A F+V++  ++ D    K   + FN       
Sbjct: 3  KKRKKKHEEGHVDESWLLPYSDLMTLLLALFIVLFATSSVDVQKLKQFSEAFNQIFDGGT 62

Query: 78 TASKGIFDEQNPPERSSQNKID 99
          +  +       P     +   D
Sbjct: 63 SFMETPTSNPLPEAPKKEGNED 84


>gi|254522020|ref|ZP_05134075.1| OmpA/MotB domain protein [Stenotrophomonas sp. SKA14]
 gi|219719611|gb|EED38136.1| OmpA/MotB domain protein [Stenotrophomonas sp. SKA14]
          Length = 513

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LP + + L ++ ++L       +SI GHTD S      R    LS DRA S 
Sbjct: 412 FATDKAQILPASELQLAQVLQLLQGDPALKLSIEGHTDDSGAVAHNRS---LSEDRARSV 468

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L   G++ DR+ + +GF   +    +  +   + NRR++++
Sbjct: 469 VAALTAKGIAADRL-QAAGFGADKPVADNGSEEGKARNRRVELV 511


>gi|258627656|ref|ZP_05722431.1| Outer membrane protein A [Vibrio mimicus VM603]
 gi|258580055|gb|EEW05029.1| Outer membrane protein A [Vibrio mimicus VM603]
          Length = 194

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    ++   L ++ + LA  +   I + GHTD +  +        LS  RA S 
Sbjct: 89  FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNTGTQKFNDS---LSEKRASSV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++  V+++ I    G+  H     +   N    NRR+++
Sbjct: 146 KTALVQRQVAQNAIY-TRGYGEHVPACTNKTKNGRACNRRVEV 187


>gi|258624563|ref|ZP_05719502.1| outer membrane protein, putative [Vibrio mimicus VM603]
 gi|262165799|ref|ZP_06033536.1| outer membrane protein [Vibrio mimicus VM223]
 gi|262171367|ref|ZP_06039045.1| outer membrane protein [Vibrio mimicus MB-451]
 gi|258583156|gb|EEW07966.1| outer membrane protein, putative [Vibrio mimicus VM603]
 gi|261892443|gb|EEY38429.1| outer membrane protein [Vibrio mimicus MB-451]
 gi|262025515|gb|EEY44183.1| outer membrane protein [Vibrio mimicus VM223]
          Length = 212

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS+  P  +  ++++ E L       I ++G+  AS        N  LS 
Sbjct: 87  QQLHILFANDSSVIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRAEY-NLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L      D  ++ NRR+   V   +G
Sbjct: 144 QRSETVRDQLIRYGVAPNRVN-IVGYGDSVLVAEGEDDISHARNRRVTATVVGYKG 198


>gi|148979688|ref|ZP_01815660.1| outer membrane protein, putative [Vibrionales bacterium SWAT-3]
 gi|145961665|gb|EDK26963.1| outer membrane protein, putative [Vibrionales bacterium SWAT-3]
          Length = 202

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +  + E L       I I+G+  AS   +    N  LS  RA++
Sbjct: 82  LFANDSYEVNPIFSDQITTMAEFLETYQSASIEIQGY--ASKVGSSEY-NLELSKKRAHN 138

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
               L+ +G+   R+ ++ G+   RL+   D    ++ NRR+ 
Sbjct: 139 VEDELLYNGIDSSRV-RVVGYGEDRLESDGDDATSHALNRRVT 180


>gi|296328018|ref|ZP_06870553.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154974|gb|EFG95756.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 182

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
             G+ I       I+      +FD             L  + + L  + +  I I G+TD
Sbjct: 57  EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 116

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 173 RRVEFII 179


>gi|194288903|ref|YP_002004810.1| outer membrane protein, ompa domain [Cupriavidus taiwanensis LMG
           19424]
 gi|193222738|emb|CAQ68741.1| putative outer membrane protein, ompA domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 217

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L   T  + I  GHTD+  F +   ++ RLS+ RA S
Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341
               L+  GV  +R+    G    +LK+  DP +              NRR+++ +V  R
Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRKSQIACQQPNRRVEVEVVGTR 214

Query: 342 QG 343
             
Sbjct: 215 SA 216


>gi|113866814|ref|YP_725303.1| outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Ralstonia eutropha H16]
 gi|113525590|emb|CAJ91935.1| outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Ralstonia eutropha H16]
          Length = 217

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L   T  + I  GHTD+  F +   ++ RLS+ RA S
Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341
               L+  GV  +R+    G    +LK+  DP +              NRR+++ +V  R
Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRKSQIACQQPNRRVEVEVVGTR 214

Query: 342 QG 343
             
Sbjct: 215 SA 216


>gi|284051859|ref|ZP_06382069.1| OmpA/MotB [Arthrospira platensis str. Paraca]
          Length = 285

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
               L         A   ++RLQ + +++++  S    +          +R+G  + I+ 
Sbjct: 116 RTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGNGL-IMT 174

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             +  +F+  SS   P   V+L  +   L +    V+ + GHTD        + N  LS 
Sbjct: 175 LPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDD---SGSRQQNLVLSS 231

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            +A +  Q L  +          I G+   R      SD     NRRI++ +  
Sbjct: 232 AQAEAIVQYLSNAVDYQAYHWVAI-GYGMTRPALENTSDINRQLNRRIEVAITP 284


>gi|209808859|ref|YP_002264397.1| outer membrane protein OmpA family [Aliivibrio salmonicida LFI1238]
 gi|208010421|emb|CAQ80772.1| outer membrane protein OmpA family [Aliivibrio salmonicida LFI1238]
          Length = 201

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 226 ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +   D+++   +F  +SS   P     ++ + E LA   E  I ++G   AS   N    
Sbjct: 70  VEQSDKKDLKILFANNSSEISPIFKSEIRTMAEFLAEYPETSIQLQGF--ASQQGNAEY- 126

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
           N RLS  RA +    L+  GV+ D+I  I GF    L    D    ++ NRR+
Sbjct: 127 NIRLSELRASAVRVALINYGVNPDKIETI-GFGDTLLTAKGDSAVSHALNRRV 178


>gi|90021493|ref|YP_527320.1| NAD-dependent DNA ligase [Saccharophagus degradans 2-40]
 gi|89951093|gb|ABD81108.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 195

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARD 283
            I    +   F+  S     E    L+K+      S     V+ ++G  DA+        
Sbjct: 74  EITHIEDVVYFEFDSKELTAEAEQKLEKLANEAKKSENENIVVVLKGFADAT---GPEEY 130

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           N  LS +RA +    L  +GV E R   +           +D     + NRR+ +++E  
Sbjct: 131 NQELSKERAQNVKAFLESNGV-EAREYNVVALGESNPVADNDTKQGRAQNRRVVLVIEPT 189

Query: 342 Q 342
           +
Sbjct: 190 E 190


>gi|53802737|ref|YP_115490.1| outer membrane protein MopB [Methylococcus capsulatus str. Bath]
 gi|4104020|gb|AAD01925.1| MopB [Methylococcus capsulatus]
 gi|53756498|gb|AAU90789.1| outer membrane protein MopB [Methylococcus capsulatus str. Bath]
          Length = 348

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269
           +KG   ++    I I +        F   S+        +L +  E L    E   I + 
Sbjct: 224 MKGAKVDSDGCLIRIELHGVN----FKYDSAELTDSAKRILDETAENLILFPEKRDIEVA 279

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPM 327
           GHT           N RLS+ RA+S    L   GV  +++    G+      +   S+  
Sbjct: 280 GHTSTE---GTNEYNMRLSIRRAHSVADYLKAKGV-TNQLYP-KGYGEEYPLVPEHSEAD 334

Query: 328 NSANRRIDIL 337
              NRR++++
Sbjct: 335 REKNRRVELI 344


>gi|87118960|ref|ZP_01074858.1| OmpF [Marinomonas sp. MED121]
 gi|86165351|gb|EAQ66618.1| OmpF [Marinomonas sp. MED121]
          Length = 192

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +        +  L K+G+ L  H +  + I GHTD+        DN RLS +RA + 
Sbjct: 64  FHTNKFELEDNELKGLLKLGKFLQKHQSSDVFIEGHTDSM---GDDEDNLRLSQNRANAI 120

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
            Q L+ K  +S DRI  I G   ++    ++     + NRR+ 
Sbjct: 121 KQALVTKFLISSDRIIAI-GHGENQPIANNETEYGRAVNRRVT 162


>gi|114047938|ref|YP_738488.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113889380|gb|ABI43431.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 290

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D+  +     +   L +I E L++  +V  + +  +TD+   R++   N ++S  RA S
Sbjct: 184 YDEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
                + SG+ +DRI  + G    R   ++D     + NRR+ I +
Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDIEERALNRRVVIRI 285


>gi|73542264|ref|YP_296784.1| OmpA/MotB [Ralstonia eutropha JMP134]
 gi|72119677|gb|AAZ61940.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 218

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L   T  + I  GHTD+  F +   ++ RLS+ RA S
Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341
               L+  GV  +R+    G    +LK+  DP +              NRR+++ +V  R
Sbjct: 159 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRTAQIACQQPNRRVEVEVVGTR 215

Query: 342 QG 343
             
Sbjct: 216 SA 217


>gi|114561619|ref|YP_749132.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114332912|gb|ABI70294.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 200

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 227 SIIDQRNT----PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           SI D         +F  +S +  P+    ++++  V+       ++I GHT     R   
Sbjct: 64  SIKDINERQDLKILFSNNSVVIEPQYYNQIERVANVMTTYPTTKVTIEGHTSK---RGSY 120

Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
             N  LS  RA +  +VL  + G+   R++  +G++  R    S    +   NRR+
Sbjct: 121 ELNLALSQKRAKAVIEVLENTFGIDPSRLNA-TGYSFDRPIDNSGTPEAEERNRRV 175


>gi|281423524|ref|ZP_06254437.1| OmpA family protein [Prevotella oris F0302]
 gi|281402344|gb|EFB33175.1| OmpA family protein [Prevotella oris F0302]
          Length = 683

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D + +   PE+   L ++  +L  +  V I +  H D   +R  A  N RLS  R
Sbjct: 518 DNIFYDFNKATLRPESTAALDELVTLLNENPHVTIELAAHCD---YRGSAEYNLRLSQQR 574

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +  + L+  G++ DR++ + G+   R K
Sbjct: 575 AENVVRYLISKGIATDRLTAV-GYGKQRPK 603


>gi|311748785|ref|ZP_07722570.1| putative OmpA family protein [Algoriphagus sp. PR1]
 gi|311748788|ref|ZP_07722573.1| putative OmpA family protein [Algoriphagus sp. PR1]
 gi|126577322|gb|EAZ81570.1| putative OmpA family protein [Algoriphagus sp. PR1]
 gi|126577325|gb|EAZ81573.1| putative OmpA family protein [Algoriphagus sp. PR1]
          Length = 805

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 220 TRTGILISIID---QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
               +   I D   Q  T  FD   S+        L++   +L      ++ I GHTD  
Sbjct: 664 DPEDLFTQIQDEIAQIPTIYFDFDKSMLRSVHKKELERTAIMLKRMPNLMLYIEGHTDQ- 722

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNS 329
             R     N  LS  RA +    L K G+  +R+ + + F   +          +  M+ 
Sbjct: 723 --RGDDAYNQSLSERRADAVKAYLTKRGIEGERMEE-TWFGETKPVNDCSELDCTSAMHQ 779

Query: 330 ANRRIDILVEDRQ 342
            NRR ++ V   Q
Sbjct: 780 LNRRTELRVGKSQ 792



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D        +   VL K+GE++       + +  HTD+   R     N  LS +RA + 
Sbjct: 536 YDLDKYQIREDAKPVLDKLGELMNRYEFLDLLVGSHTDS---RASDEYNITLSNNRAEAV 592

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
            + + +  +  +RI ++  F   +L           +  +  NRR ++++E
Sbjct: 593 TEYMAQYNIPAERI-RLEWFGEQQLVNDCGDGVPCPETDHQLNRRSELVLE 642


>gi|257125599|ref|YP_003163713.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049538|gb|ACV38722.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 10/238 (4%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
            ++ E +T + +   I   N     +  ENN+  L      +   N           L +
Sbjct: 18  PTVSEKVTTSDMRKDIIRANVADIEKDSENNVPILDTPNPEKLTDNDNPDLI--TVTLPQ 75

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           +      ++K           +    + +++ ++   K+ +S  +    ++I      + 
Sbjct: 76  NEKNTSLLDKGGTQPEQSPKSQDQDVISQQQGIRSEIKESASLDTNTQENSINNPQKVQI 135

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
            ++ I+    +  N   F K+S     E   VL+ I   +  +  ++SI G+TD S    
Sbjct: 136 LKSEIITLRAEDLN---FHKNSINLKEEAYSVLKDIKNYIEENDYLVSIVGYTDESGI-- 190

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
            A +N RLSL RA      L++ G+S+DRI  + G   +    +++       NRR++
Sbjct: 191 AAYNN-RLSLRRAEKVSSKLLELGLSKDRILDLIGRGENNPINSNETKEGRERNRRVE 247


>gi|330970538|gb|EGH70604.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 830

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 68  YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
           YFN           + +T S  +       +R++++ + ++  + +   ++     + + 
Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598

Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178
               +   +    LS +Q+ +     L           + + T    + N E        
Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658

Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              + +     +  + D+ + + +      + N +  +L ++ +    I  I   +  +F
Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715

Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292
               +       E    L  I   L  +     I I GH D        + N ++S  RA
Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338
            +    L+  GV  + +  I G    +  +  D              NRR++I V
Sbjct: 773 QTIKTYLVGKGVPAELVDAI-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826


>gi|149191044|ref|ZP_01869304.1| putative outer membrane protein [Vibrio shilonii AK1]
 gi|148835072|gb|EDL52049.1| putative outer membrane protein [Vibrio shilonii AK1]
          Length = 207

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD +S+   P     + ++ + L    +  I I+G+            N  LS +RA
Sbjct: 85  RILFDNASTYIKPVFQTQISQMADFLKEYPDTTIEIQGYAS---VVGNPEKNLVLSKNRA 141

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334
               + ++ +G++ +R++ I G+   + +   D    ++ NR++
Sbjct: 142 EVVREAIINNGIAPERLT-IVGYGDTQPEELGDTEFAHAMNRKV 184


>gi|260890421|ref|ZP_05901684.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260860041|gb|EEX74541.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 180

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L+ I  +L        + I GHTD++      + N +LSL+RA +
Sbjct: 64  FKVDGEKMNESESYDLKYIANMLNTHIEKGSLEIIGHTDST---GSKKHNLKLSLERAIN 120

Query: 295 AYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           A ++L + G+ +   + KI G         ++ +     NRRI+I++ D
Sbjct: 121 AAKLLREYGLDKRFSVVKIIGKGGEEPMDTNETVEGRYNNRRIEIILND 169


>gi|188533999|ref|YP_001907796.1| OmpA family protein [Erwinia tasmaniensis Et1/99]
 gi|188029041|emb|CAO96909.1| OmpA family protein [Erwinia tasmaniensis Et1/99]
          Length = 407

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 65/184 (35%), Gaps = 19/184 (10%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
               E  + +     LP L   +  A    + L DL +++S         +++     + 
Sbjct: 222 GRSAEPLLQQIWQTPLPQLPGGQRTAA--PQDLFDLRQRLS---------DLIGSHRLDV 270

Query: 220 TRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-P 276
           T    G  I +       +F    +   PE   ++ ++   +      + I  +TD   P
Sbjct: 271 TDGDYGNKIIL---PADSLFTYQGAALTPEGRALVARVASAMESRKGTLLIGVYTDNRLP 327

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334
             +     +  S  +A +   ++++         +  G    R ++ ++     + NRR+
Sbjct: 328 HSSPFTSTYAYSAAQAEAISNMMVQLIAHPCITVRAEGRGDSRGRVPNNSAENRARNRRV 387

Query: 335 DILV 338
           +I +
Sbjct: 388 EITL 391


>gi|220925333|ref|YP_002500635.1| peptidoglycan-associated lipoprotein [Methylobacterium nodulans ORS
           2060]
 gi|219949940|gb|ACL60332.1| peptidoglycan-associated lipoprotein [Methylobacterium nodulans ORS
           2060]
          Length = 172

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  S+   P     L K  + L+        I GH D    R     N+ L   R
Sbjct: 62  DRVFFETDSTDLTPTATATLDKQAQWLSRYPHYTFLIEGHADE---RGTREYNFSLGARR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L   G++  R+  +S +   R     + ++  S NRR
Sbjct: 119 AQTVRDYLASRGIAGSRMRTVS-YGKERPVAVCNDISCWSQNRR 161


>gi|156974345|ref|YP_001445252.1| hypothetical protein VIBHAR_02060 [Vibrio harveyi ATCC BAA-1116]
 gi|156525939|gb|ABU71025.1| hypothetical protein VIBHAR_02060 [Vibrio harveyi ATCC BAA-1116]
          Length = 219

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ +  +L    +  + I G+TD++        N  LS  RA S  Q L+   V+  R  
Sbjct: 130 LRGVARILVEYPDTSLVIDGYTDST---GSDSYNQTLSERRAESVRQYLVSQKVAPGRAI 186

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              G+       ++   +    NRR++I +   +
Sbjct: 187 A-RGYGERNPICSNQTSDGRACNRRVEIQILPLK 219


>gi|262394173|ref|YP_003286027.1| outer membrane protein [Vibrio sp. Ex25]
 gi|262337767|gb|ACY51562.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 204

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 213 KGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +G   +    G  I   D      +F   S    P     ++++ + L       SI  H
Sbjct: 59  EGSEVDNDGCGEYIKASDNMQVRILFANDSDEINPVFRRQVRELSDFLKEYPTT-SIELH 117

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329
             AS        N  LS  RA +  + L+   +   R+ +I GF    L      +  ++
Sbjct: 118 GYASKVGGSQH-NQDLSERRARNVREALLSYNIEPSRV-RIVGFGDTHLAQQGTDEVSHA 175

Query: 330 ANRRIDILVEDRQG 343
            NRR+   V   +G
Sbjct: 176 LNRRVTASVVGYKG 189


>gi|325474507|gb|EGC77694.1| OmpA family protein [Treponema denticola F0402]
          Length = 1345

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 214  GVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
             +L       + I   SII + N   F+      + +   +L++I  +L       + + 
Sbjct: 1211 DILVIRDGDKLKIAVPSIIFRANAADFEGLDKAIVDKNKSILKRIAVILNKFPEYQVQVE 1270

Query: 270  GHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GH + +             LS  RA +  Q L+K GV   R+S I G    +   + +  
Sbjct: 1271 GHANTTTGTEKEETTALLPLSKQRAEAVRQFLIKEGVRSSRLSSI-GMGSSKPVASLNDR 1329

Query: 328  NS--ANRRIDILV 338
            ++   NRR++ ++
Sbjct: 1330 DNWWKNRRVEFIL 1342


>gi|226069484|dbj|BAH36952.1| OmpA-like outer membrane protein [Pasteurella pneumotropica]
          Length = 347

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A  +   +++ G+TD          N +LS  RA S 
Sbjct: 234 FAFGKANLKPQAQATLDGIYGEIAQVSNAKVAVAGYTDRI---GKDAANLKLSQRRADSV 290

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GV+   I+  +G+        +  D +            +RR++I V
Sbjct: 291 ANYLVAKGVAAQDITA-TGYGEANPVTGATCDAVKGRKALIACLAPDRRVEIAV 343


>gi|330937557|gb|EGH41498.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 221

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 99  FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 155

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
                   G+ E +I+ +             ++   + NRR+++ +E 
Sbjct: 156 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 202


>gi|42527533|ref|NP_972631.1| OmpA family protein [Treponema denticola ATCC 35405]
 gi|41818118|gb|AAS12542.1| OmpA family protein [Treponema denticola ATCC 35405]
          Length = 1338

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 214  GVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
             +L       + I   SII + N   F+      + +   +L++I  +L       + + 
Sbjct: 1204 DILVIRDGDKLKIAVPSIIFRANAADFEGLDKAIVDKNKSILKRIAVILNKFPEYQVQVE 1263

Query: 270  GHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            GH + +             LS  RA +  Q L+K G+   R+S I G    +   + +  
Sbjct: 1264 GHANTTTGTEKEETTALLPLSKQRAEAVRQFLIKEGLKSSRLSSI-GMGSSKPVASLNDR 1322

Query: 328  NS--ANRRIDILV 338
            ++   NRR++ ++
Sbjct: 1323 DNWWKNRRVEFIL 1335


>gi|110638992|ref|YP_679201.1| outer membrane peptidoglycan-associated protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281673|gb|ABG59859.1| outer membrane peptidoglycan-associated protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 710

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++ + +    E    +  I    L     + I I  HTD        + N  LS  RA  
Sbjct: 601 YETNQTDLNDEAKAAIDNILIPFLKEHPTDKIIISSHTDDV---GSHKYNENLSDQRALK 657

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDILV 338
             Q L++ G+S  +I +  G+   +   ++ +P         S NRR + L+
Sbjct: 658 VMQYLIQKGISAKQI-QAKGYGETKPIASNINPDGSENEIGRSINRRTEFLI 708


>gi|255038084|ref|YP_003088705.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254950840|gb|ACT95540.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 648

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+  + L K+ ++L  +  + I +  HTDA   R     N  LS +RA SA   L   
Sbjct: 551 IRPDAAIELDKLVQILKDNPTMTIELSSHTDA---RATDAYNMTLSQNRAESAVAYLNSK 607

Query: 303 GVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340
           G+  DR+    G+    L I +   +  +  NRR +  +  
Sbjct: 608 GIEADRMEA-KGYGERELIIPNAKTEEEHQRNRRTEFTILS 647


>gi|258621934|ref|ZP_05716964.1| outer membrane protein, putative [Vibrio mimicus VM573]
 gi|258585872|gb|EEW10591.1| outer membrane protein, putative [Vibrio mimicus VM573]
          Length = 212

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS+  P  +  ++++ E L       I ++G+  AS        N  LS 
Sbjct: 87  QQLHILFANDSSVIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRAEY-NLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            R+ +    L++ GV+ +R++ I G+    L      D  ++ NRR+   V   +G
Sbjct: 144 QRSETVRDQLIRYGVAPNRVN-IVGYGDSVLVAEGEDDISHARNRRVTATVVGYKG 198


>gi|229588474|ref|YP_002870593.1| hypothetical protein PFLU0931 [Pseudomonas fluorescens SBW25]
 gi|229360340|emb|CAY47197.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 257

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F  +S          L  +   L   +   I I
Sbjct: 98  ESMANTGVEVQRQGDQIKLI-MPGNITFATNSDAISSSFYQPLNNLANSLKQFNQNTIQI 156

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV+   +S   G        ++    
Sbjct: 157 VGYTDST---GSRQLNMDLSQRRAQSVANYLTSQGVNGANLSA-RGAGPDNPIASNADVN 212

Query: 327 MNSANRRIDI 336
             + NRR+++
Sbjct: 213 GRAQNRRVEV 222


>gi|254249294|ref|ZP_04942614.1| Outer membrane protein [Burkholderia cenocepacia PC184]
 gi|124875795|gb|EAY65785.1| Outer membrane protein [Burkholderia cenocepacia PC184]
          Length = 263

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    +    L +            ++I G TD++     A  N  LS  RA + 
Sbjct: 160 FATDSAALTSQARNDLDRFIAANRGVEFARVAITGFTDST---GSAAHNRTLSEARARTV 216

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
              L  +G+     S    G A      A+    + NRR++I ++ +
Sbjct: 217 VNYLRSNGLQARSFSAEGLGAADPVASNATADGRAQNRRVEIRLDVK 263


>gi|42521994|ref|NP_967374.1| outer membrane protein A [Bdellovibrio bacteriovorus HD100]
 gi|39574525|emb|CAE78367.1| outer membrane protein A [Bdellovibrio bacteriovorus HD100]
          Length = 171

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS     +   L +I   L ++      I I G TD  P  +  R N RLS  RA 
Sbjct: 68  FNVGSSELNASSRRALNEIASELKNTANSYEKIRISGLTD--PQGDADR-NLRLSEARAT 124

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI--DIL 337
                L+  GV ED++  +   A  R  + +    + +RR+  +I+
Sbjct: 125 RVRDYLVSRGVPEDKLETVGKGAVARDTLGTSSQMARDRRVDFEIV 170


>gi|269219690|ref|ZP_06163544.1| OmpA family protein [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210932|gb|EEZ77272.1| OmpA family protein [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 212

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+   P    VL  +  +      + ISI GHTD+         N +LS DRA + 
Sbjct: 106 FEVDSANLTPRAREVLDGLVSKWRKKKPKEISITGHTDSVA---DDDHNQKLSEDRAKAV 162

Query: 296 YQVLM--KSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDIL 337
              +    SGVS     ++ G                 ++   +ANRR+ I+
Sbjct: 163 RSYVAPKVSGVS----IEVEGKGEKEPAASETNEDGSPNEAGKAANRRVVIV 210


>gi|217970007|ref|YP_002355241.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|217507334|gb|ACK54345.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 200

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE-TIVV 251
             L ++++   +GL    I          TG  + I        F   S    P     +
Sbjct: 60  AALREQLAKATTGLAGVEIGSA-----GDTGFRVQIPVADG---FASGSPAIRPTLGRAL 111

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
                 + A +   + + GHTD+         N RLS+ RA +    L + G++ DR++ 
Sbjct: 112 DALAPALAAEAGVAVRVVGHTDSQ---GSEMVNLRLSIARAEAVVAWLRERGIALDRLAA 168

Query: 312 -ISGFAHHRLKIASDPMNSANRRIDILV 338
              G A      A++     NRRI++++
Sbjct: 169 DGRGEADPLTSNATEEGRVRNRRIELIL 196


>gi|167762473|ref|ZP_02434600.1| hypothetical protein BACSTE_00828 [Bacteroides stercoris ATCC
           43183]
 gi|167699579|gb|EDS16158.1| hypothetical protein BACSTE_00828 [Bacteroides stercoris ATCC
           43183]
          Length = 224

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 17/143 (11%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
           A KI      +V D      +  T  +GI           +F  +SS    +    L+ +
Sbjct: 83  AAKIEGAQVEMVKDANNLDAVKVTFDSGI-----------LFTFNSSTLSNDAKASLRDL 131

Query: 256 GEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            ++L   +T  I+I GHTD          N ++S +RAY+    L   GVS  +  ++ G
Sbjct: 132 AKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYAVENYLQDCGVSPSQFKQVEG 188

Query: 315 FAHHRLKIASDPMNSANRRIDIL 337
             ++          S NRR+ I 
Sbjct: 189 VGYNE--YDESLSASENRRVVIF 209


>gi|153002489|ref|YP_001368170.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|217975056|ref|YP_002359807.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|151367107|gb|ABS10107.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|217500191|gb|ACK48384.1| OmpA/MotB domain protein [Shewanella baltica OS223]
          Length = 202

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           + +F   S+   PE    ++++   L       ++I GHT  +        N  LS +RA
Sbjct: 77  SILFPNDSAYIAPEYYPQIEEVAVFLQQYPTTKVTIEGHTSRT---GTDERNLVLSQERA 133

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
            +   VL  + G+  +R++   G+      +      +   NRR+
Sbjct: 134 DAVTAVLAERFGIDRNRLTA-KGYGSSNPVVLERTPEAEIRNRRV 177


>gi|157960967|ref|YP_001501001.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157845967|gb|ABV86466.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 198

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + +  LP     ++ I   L  +   I + GHTD+      A  N +LSL RA    
Sbjct: 95  FGFAQADILPSQEQTIEVIARWLKSTRVSIQLVGHTDSI---GDASFNLQLSLKRAEQVK 151

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +V ++  G + DR  +I+G         +        NRR++ LV
Sbjct: 152 KVFVEQFGFAADRF-QINGVGSSLPVANNQTAFGREQNRRVEFLV 195


>gi|71907527|ref|YP_285114.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847148|gb|AAZ46644.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 198

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           MF+  ++     ++  +  I           + I GHTDA+      + N  LSL+RA  
Sbjct: 96  MFESGTTNLTTASLDQIPNIVAASQKRPAVSVRISGHTDAT---GSDKVNDALSLERAMQ 152

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMNSANRRIDILV 338
            + +L + G+   R+  ++  G  +  +          NRR+ ++V
Sbjct: 153 VWNLLQQKGIPA-RLMSVTSHGKGNPAIPTPDGVAEPRNRRVVVIV 197


>gi|262068085|ref|ZP_06027697.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693]
 gi|291378171|gb|EFE85689.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693]
          Length = 183

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           + G+ I       I+      +FD             L  + + L  + +  I I G+TD
Sbjct: 58  QEGVTIRREGNNLILSMPELILFDFDKYAVKEGIKPSLATLAKALGENKDIHIKIDGYTD 117

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
              F      N  LS+ RA +    L+  G     I  I G+        +      S N
Sbjct: 118 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 173

Query: 332 RRIDILV 338
           RR++ ++
Sbjct: 174 RRVEFII 180


>gi|78046418|ref|YP_362593.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034848|emb|CAJ22493.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 400

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G LI++ D     +FD   S   P+   VL  +G  L   T   + +RGHTDA   +   
Sbjct: 283 GYLITLND---RILFDFDKSDIRPDAARVLDTLGAALTKVTAKDMQVRGHTDA---KGSD 336

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334
             N  LS  RA +             + +   G+   +    +      +P     NRR+
Sbjct: 337 DYNQALSERRANAVLA--ALRARGAAQSANAKGYGESQPVAPNTLNGQDNPGGRQLNRRV 394

Query: 335 DILVED 340
           +I +  
Sbjct: 395 EIFLRT 400


>gi|325473749|gb|EGC76938.1| OmpA family protein [Treponema denticola F0402]
          Length = 440

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 88/245 (35%), Gaps = 30/245 (12%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D  +         D+ +   N+    +   +  F+ +N ++ +H    L   S  G+ L 
Sbjct: 223 DEELMSSEGGRKTDIYLDDINRPVLIREKIDEEFFYANGKKIKHRGFLLHFYSYTGRALA 282

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           +   ++ S ++E      P  +           LQ    +I             K     
Sbjct: 283 QGGLVQSSPSQEAASKKTPSQEIP---------LQKEKTEIKPN----------KDFEVA 323

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPF 277
            T+ G ++ + + +    F+   ++ L      L +I ++L  S      + GHT     
Sbjct: 324 KTKRGTMLRLKNLQ----FEPDKAVLLKGEEAKLDEIAKILKKSESEFFFVEGHTADVGK 379

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
               +    LS +RA +  + L+K G+  ++     G    +    +  +   + NRR++
Sbjct: 380 PEEEKI---LSQERAKTVIEKLVKRGIPAEKFI-YQGAGGTKPIAPNGTEEGRAQNRRVE 435

Query: 336 ILVED 340
           I + D
Sbjct: 436 ITIID 440


>gi|294139825|ref|YP_003555803.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293326294|dbj|BAJ01025.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 210

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +        VL +I + L  +   + + GHTD+    N+   N RLS  RA S  
Sbjct: 106 FEFAKAEVSYSQWQVLAQIKQFLQLNDVDLCLIGHTDS--IGNLEA-NQRLSEARAKSVM 162

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           ++L++  G    R   + G         +D     + NRR++ LVE
Sbjct: 163 RILVEDYGFEPGRFI-VRGMGTRSPIGTNDTPGGRTLNRRVNFLVE 207


>gi|229894342|ref|ZP_04509525.1| Outer membrane protein [Yersinia pestis Pestoides A]
 gi|229703740|gb|EEO90756.1| Outer membrane protein [Yersinia pestis Pestoides A]
          Length = 327

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 195 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 251

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 252 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 301


>gi|163754882|ref|ZP_02162003.1| hypothetical protein KAOT1_02672 [Kordia algicida OT-1]
 gi|161324949|gb|EDP96277.1| hypothetical protein KAOT1_02672 [Kordia algicida OT-1]
          Length = 560

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 240 SSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            S+         +  K+  VL  +   + I  HTD+   R  A  N  LS  RA +    
Sbjct: 454 GSATLTAAAKREIDTKLLPVL-QTGVSVEIASHTDS---RGSAASNEALSQRRAQAVTNY 509

Query: 299 LMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342
           L+  G++  +I   +G+   RL          ++  + ANRR    V D++
Sbjct: 510 LISKGINSSKIVS-NGYGERRLLNRCKDGVSCTEREHLANRRTQFRVLDQK 559


>gi|114763456|ref|ZP_01442863.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114543994|gb|EAU47005.1| OmpA domain protein [Roseovarius sp. HTCC2601]
          Length = 637

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
              ++ II  R    F+  S+        V+  I E+L    +  + I+GHTD+      
Sbjct: 487 EAQIVEIIGDRKIN-FEPGSANLDASAKDVMDDIAELLKLCGDIPLEIQGHTDSQ---GR 542

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
              N +LS DRA +    L    V      ++ G+   +    +  +    ANRRI
Sbjct: 543 ESMNEQLSQDRAQAVLDALRNRRVLTAS-YRVKGYGEMQPIADNGTEEGREANRRI 597


>gi|89890263|ref|ZP_01201773.1| putative outer membrane protein [Flavobacteria bacterium BBFL7]
 gi|89517178|gb|EAS19835.1| putative outer membrane protein [Flavobacteria bacterium BBFL7]
          Length = 571

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              ++D        +    L ++ + +  +    I I  HTD+   R     N  LS +R
Sbjct: 458 KNILYDLDKYYIRADAEPELNRLVQFMKDNPGVRIEISSHTDS---RGSNAYNKTLSQNR 514

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           A +A   +   G+  +R+  I G+   RL          S   +  NRR ++ V
Sbjct: 515 ASAARDYIASQGIDANRVVGI-GYGETRLLNRCADGIECSAAEHQINRRTEMKV 567


>gi|114049133|ref|YP_739683.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113890575|gb|ABI44626.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 185

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    +++I   L       ++I GHT  +        N  LS +RA +
Sbjct: 62  LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 118

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
              VL     +   R++ I G+   R  +     ++   NRR+
Sbjct: 119 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 160


>gi|282600293|ref|ZP_05973733.2| membrane protein OmpA-family [Providencia rustigianii DSM 4541]
 gi|282565742|gb|EFB71277.1| membrane protein OmpA-family [Providencia rustigianii DSM 4541]
          Length = 586

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            ++   +  +FD        +   VL   +  + A S  +I + G+TD++        N 
Sbjct: 446 EMVTLDSLSLFDVGQYTLKTDATKVLVDALLNIKAKSGWLIVVSGYTDST---GNPELNQ 502

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +LSL RA S    ++++         + G+  +    +++     + NRR++I +  +
Sbjct: 503 KLSLKRAESVRDWMIQTSDISPTCFAVQGYGQNNPVASNETSEGRAQNRRVEIRLIPQ 560


>gi|225569968|ref|ZP_03778993.1| hypothetical protein CLOHYLEM_06063 [Clostridium hylemonae DSM
           15053]
 gi|225161438|gb|EEG74057.1| hypothetical protein CLOHYLEM_06063 [Clostridium hylemonae DSM
           15053]
          Length = 255

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 9/193 (4%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K ++L KS + E +   +           + +       +     ++   L  L   +  
Sbjct: 42  KWENLVKSMNPEAAEPSQIVTDTMEKEGTENVPGANTTEIDQKFDEMYDNL--LKMQDAS 99

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIR 269
             V       G     I  ++   FD  S +   E   VL     V+A +++    I + 
Sbjct: 100 GEVADIQIAKGDGYQFITFKDNVFFDGDSYVLRDEGKSVLDTFSSVIAPASDAIKEIQVL 159

Query: 270 GHTD-ASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           GHT  A P   N    +  LS  R+      + +  + E +    +G+   R     D  
Sbjct: 160 GHTSQAEPNIPNEVMTDRVLSATRSAVVVAYVQQKNIIEAKKLVSAGYGQFRPIDTFDTF 219

Query: 327 -MNSANRRIDILV 338
              + NRR++IL+
Sbjct: 220 EGRARNRRVEILI 232



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 57/177 (32%), Gaps = 3/177 (1%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +K++      P     W   Y D +T+L+ FF++++ I++ D    + + +  NP     
Sbjct: 1   MKRRQKS---PEEGSDWMGTYGDMVTLLLCFFVLLYSISSVDQVKWENLVKSMNPEAAEP 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                   +++        N  ++        +++     ++ +    Q  + + +    
Sbjct: 58  SQIVTDTMEKEGTENVPGANTTEIDQKFDEMYDNLLKMQDASGEVADIQIAKGDGYQFIT 117

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            + +           ++GK +  +     +   +    +  L             + 
Sbjct: 118 FKDNVFFDGDSYVLRDEGKSVLDTFSSVIAPASDAIKEIQVLGHTSQAEPNIPNEVM 174


>gi|107027335|ref|YP_624846.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|105896709|gb|ABF79873.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
          Length = 119

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STE-VISIRGHTDASPFRNIAR-DNWRLSLDRAY 293
           +        P    ++  IG  +A       + + G+TD  P   I+R +N  LS  RA 
Sbjct: 12  YASGDVTVEPWWASMMATIGRTIAASVPGAYVQVVGYTDNVPAGAISRGNNQALSEARAR 71

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              ++   +GV    IS  +G         +   P  S NRR+++ V +
Sbjct: 72  EVARIFAAAGVPMQNISA-TGQGDADPLADNGTAPGRSRNRRVEVTVSN 119


>gi|304559160|gb|ADM41824.1| Outer membrane protein [Edwardsiella tarda FL6-60]
          Length = 152

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   F  T  G            +F  + +   PE+   + ++G  L+        + 
Sbjct: 26  VLQQQGFTPTPEGWS---FGMSEKVLFGNNQATLRPESQAHVAELGHALSQVAILHARLD 82

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328
           G+TD        + N +LSL RA      +   G+    ++ +  G ++     A+    
Sbjct: 83  GYTDNY---GTDQYNQQLSLKRADKVADAMASGGMPRANLTTRGMGKSNPIADNATRQGR 139

Query: 329 SANRRIDILVE 339
           + NRR+ I+++
Sbjct: 140 AENRRVAIVIQ 150


>gi|325287615|ref|YP_004263405.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324323069|gb|ADY30534.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 366

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +  SS    E   ++  ++  VL  +    + I  HTD+   R  +  N  LS  RA S 
Sbjct: 258 NTGSSTLTAEAKRIIDSRLMPVLNQNPGVKLEIASHTDS---RGNSVSNQSLSERRAKSV 314

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              L+  GV+   +   +G+  ++LK         ++  ++ANRR +  + +
Sbjct: 315 ADYLISKGVNSS-LLVANGYGENKLKNRCKDGVSCTEREHAANRRTEFRLIN 365


>gi|91223761|ref|ZP_01259025.1| hypothetical protein V12G01_18492 [Vibrio alginolyticus 12G01]
 gi|91191253|gb|EAS77518.1| hypothetical protein V12G01_18492 [Vibrio alginolyticus 12G01]
          Length = 288

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-----SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +   LS             E  R+ + I     ++++  N   F   S+   P+ +  L 
Sbjct: 129 LDYVLSQTTCTPPDD---IEALRSDLNIVSDIYALLNIDNQ--FAVDSAEINPKYMGHLA 183

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-- 310
           +   +L       + + GH DA+        N +L+  RA    + L   G++ +R++  
Sbjct: 184 EAAYILRDHPNLSLVVTGHADAT---GTPDYNQKLAQARAEQVKRYLTVFGITSERVTTK 240

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338
            +     +      +       NRR+ I V
Sbjct: 241 SV---GDNLPLYEGETSAVRLTNRRVSIEV 267


>gi|153832375|ref|ZP_01985042.1| outer membrane protein [Vibrio harveyi HY01]
 gi|148871404|gb|EDL70267.1| outer membrane protein [Vibrio harveyi HY01]
          Length = 284

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L  +
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLELQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255
           +   LS             E  R+ + I  +I D  N    F   S+   P+ +  L + 
Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVANIYDLLNVDNQFAVDSAEINPKYMGHLAEA 185

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L       + + GH DA+        N +L+ DRA    + L   G++ DR+ +   
Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
                             NRR+ I V + +
Sbjct: 242 VGETLPLYDGQTPAVRLTNRRVSIEVLNAK 271


>gi|86130800|ref|ZP_01049399.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818211|gb|EAQ39371.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 632

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P     L ++  V+      VIS   HTD    R     N  LS  RA S 
Sbjct: 526 FDFDKSNIRPSAAAELDRLVNVMKQYPTMVISAESHTD---IRGSESYNKNLSQRRADSM 582

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRR 333
              ++  G++  RIS I G       IA     ++  +  NRR
Sbjct: 583 RDYVVSKGINASRISSI-GKGESEPAIACGTNCTEDEHQLNRR 624


>gi|255319440|ref|ZP_05360655.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens
           SK82]
 gi|262379403|ref|ZP_06072559.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens
           SH164]
 gi|255303508|gb|EET82710.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens
           SK82]
 gi|262298860|gb|EEY86773.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens
           SH164]
          Length = 190

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 82  FDYDSSDLSNEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 138

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+ +++  +S +             +   NRR++I
Sbjct: 139 QSYLVTNGVNPNQLEAVS-YGKEMPINPGHDEAAWKENRRVEI 180


>gi|163800343|ref|ZP_02194244.1| putative protein F-related protein [Vibrio sp. AND4]
 gi|159175786|gb|EDP60580.1| putative protein F-related protein [Vibrio sp. AND4]
          Length = 209

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D+    N E  +     +K    A +   + Q+  +K S  +  L        +  ET  
Sbjct: 32  DVAPRTNSELRHPEWGYTKSYAAAPRYVTQAQNSMEKKSDGMMSLERFLNRHQIAHETIN 91

Query: 222 -TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
              +++ + +Q +   F   SS    ++   +Q +G  LA  T+  + + GH D++   +
Sbjct: 92  GEHLMVRLKEQVH---FQTGSSRLSAQSQGWIQSLGHYLAKRTDIDVVVNGHADSAGAAS 148

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
                  LS  RA    + L+++ +   R+    GF  +  + ++   +    NRR++++
Sbjct: 149 FNDS---LSEKRAREVEKQLLETSLPRQRVFS-RGFGEYVPQCSNATASGKACNRRVELM 204

Query: 338 VEDRQ 342
           +   Q
Sbjct: 205 LIVGQ 209


>gi|262394300|ref|YP_003286154.1| outer membrane protein [Vibrio sp. Ex25]
 gi|262337894|gb|ACY51689.1| outer membrane protein [Vibrio sp. Ex25]
          Length = 272

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 53  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGE 257
           +   LS          +    +   ++  I    N    F   S+   P+ +  L +   
Sbjct: 113 LDYVLSQTTCTP-PDDIEALRSDLNVVAEIYALLNIDNQFAVDSAEINPKYMGHLAEAAY 171

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS--KISG 314
           +L       + + GH D          N +L+  RA    + L   G++ +R++   +  
Sbjct: 172 ILRDHPNLTLVVTGHAD---VTGAPDYNQKLAQARAEQVKRYLTVFGITSERVTTKSV-- 226

Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338
                     +       NRR+ I V
Sbjct: 227 -GDSLPLYEGETPAVRLTNRRVSIEV 251


>gi|253698930|ref|YP_003020119.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251773780|gb|ACT16361.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 204

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS+        L    E L  + +  + I GH+D    R     N  LS  RA SA
Sbjct: 102 FDFDSSLLNDAARATLVANLEKLKANPKASLRIEGHSDE---RGSDDYNLALSERRAQSA 158

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
            + L   G   +++  + G+   R  +  +     + NRR + ++
Sbjct: 159 KKYLQALGFPAEKL-SVLGYGEERPAVKGESEEFWAKNRRDEFVI 202


>gi|332827935|gb|EGK00657.1| hypothetical protein HMPREF9455_02931 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 661

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 32/137 (23%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               +D   +   PE+   L  + ++L  +  V I +  HTD     +   +N RLS  R
Sbjct: 522 ENIFYDFDKATLRPESKEELDGLIDLLNLNPNVTIELSAHTDRK--GSDEYNN-RLSQRR 578

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHR---------------------------LKIA 323
           A S    L+  G+++DR++ +  G A  +                               
Sbjct: 579 AESVVNYLITHGIAKDRLTAVGKGKAQPKNVTKAVVKKYDFLKEGEVLTEQFIQELPPEQ 638

Query: 324 SDPMNSANRRIDILVED 340
            D  +  NRR +  V  
Sbjct: 639 QDMADQVNRRTEFRVLS 655


>gi|262038728|ref|ZP_06012088.1| OmpA/MotB domain-containing protein [Leptotrichia goodfellowii
           F0264]
 gi|261747280|gb|EEY34759.1| OmpA/MotB domain-containing protein [Leptotrichia goodfellowii
           F0264]
          Length = 362

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F     +P       L  I  V+        I   GHTD++        N +LS+ RA +
Sbjct: 246 FKVDGRVPNQAEAKDLGTIANVINQFADGGTIDFVGHTDST---GSNAYNQKLSVARAQN 302

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             ++L + G+    IS   I+G    +    ++ +     NRR+++  ++
Sbjct: 303 VARLLREYGLKNS-ISYGTITGKGESQPADTNNTVQGRYNNRRVELFFQN 351


>gi|56461082|ref|YP_156363.1| OprF [Idiomarina loihiensis L2TR]
 gi|56180092|gb|AAV82814.1| Outer membrane porin [Idiomarina loihiensis L2TR]
          Length = 363

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS         ++ + E +       I+I GHTD++       + W LS  RA + 
Sbjct: 252 FDLNSSNIRSGERSDIKDMAEFMKEHPQLDITIHGHTDST--GEAKYNQW-LSERRAEAV 308

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
              L+K  G+ + R+    G    + K+  +       NRRI+
Sbjct: 309 ANALVKQHGIEKSRVD-FKGHGESQPKVRENSAADRQENRRIE 350


>gi|124005068|ref|ZP_01689910.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
 gi|123989320|gb|EAY28881.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
          Length = 680

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--IS 200
            K+S     E    + +    ++     +   +   + +  + + RKK      K+  I 
Sbjct: 487 EKSSTQTAEENNTSVSEEVSSDRDNGVYKATMIK--TGKNYMVLVRKKGFYQYKKEVNIP 544

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           + ++  V ++I    +    + G+ +         +F   S    P  I  L  I   L 
Sbjct: 545 TNITTPVKEDIPLTKIKPGDKLGLQV---------LFGFDSYQIQPRYISHLDSIANYLK 595

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHH 318
             TE V+ I GHTD     N   +N  L+  R+ +    L+ K G+   ++    G+A  
Sbjct: 596 EYTEMVVEISGHTDN--IGNRWYNNL-LAKRRSQAVINYLINKKGIPAAQVV-FKGYADS 651

Query: 319 RLKIASD--PMNSANRRID-ILVE 339
           +    +      + NRR+D I+++
Sbjct: 652 KPLGTNTTVTGRALNRRVDGIVIK 675


>gi|288802401|ref|ZP_06407840.1| OmpA family protein [Prevotella melaninogenica D18]
 gi|288334929|gb|EFC73365.1| OmpA family protein [Prevotella melaninogenica D18]
          Length = 672

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           GI + I+   +   +D   +   PE+   L  +  +L  +  V I +  HTD   +   A
Sbjct: 496 GINVPIL--IDNIFYDFDKATLRPESEKALDALVNLLKENPNVTIELSAHTD---YLGSA 550

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             N RLS  RA +    L   G+  DR++ + G+   R K
Sbjct: 551 DYNKRLSQRRADAVVAYLTAHGIVRDRLTPV-GYGKERPK 589


>gi|254474524|ref|ZP_05087910.1| OmpA family protein [Ruegeria sp. R11]
 gi|214028767|gb|EEB69602.1| OmpA family protein [Ruegeria sp. R11]
          Length = 185

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+   R     N RLS  RA +  +V    G    RI +  G+     ++ +D  
Sbjct: 117 ITGHTDS---RASDEYNMRLSQRRANAVAEVGESVG---ARILEARGYGERDPRVPNDSA 170

Query: 328 N--SANRRIDIL 337
           +  + NRR++I+
Sbjct: 171 SNMAQNRRVEII 182


>gi|94309657|ref|YP_582867.1| OmpA/MotB [Cupriavidus metallidurans CH34]
 gi|93353509|gb|ABF07598.1| outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Cupriavidus metallidurans CH34]
          Length = 217

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +   L   T  + I  GHTD+  F +   ++ RLS+ RA S
Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341
               L+  GV  +R+    G    +LK+  DP +              NRR+++ +V  R
Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRTAQIACQQPNRRVEVEVVGTR 214

Query: 342 QG 343
             
Sbjct: 215 SA 216


>gi|319793387|ref|YP_004155027.1| peptidoglycaN-associated lipoprotein [Variovorax paradoxus EPS]
 gi|315595850|gb|ADU36916.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus EPS]
          Length = 172

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   ++      L  +    ISI GHTD    R     N  L   RA + 
Sbjct: 70  FDYDSYTVKPEFQSIVDGHARFLKSAPQRRISIEGHTDE---RGGREYNLALGQKRAEAV 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
            + L   GV++ +I  +S F   +  +    +   + NRR +I
Sbjct: 127 RRALTLLGVNDSQIEAVS-FGKEKPAVQGGGEEAWAQNRRAEI 168


>gi|294142621|ref|YP_003558599.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293329090|dbj|BAJ03821.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 200

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 228 IIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
           I D+     +F   S    P     ++ I   +       ++I GH   +        N 
Sbjct: 67  IHDRSELKILFPNDSYYIDPMYYDQVEVIAVFMNDFPNTNVTIEGHCSKT---GSYEHNL 123

Query: 286 RLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
            LS +RA +   +L +   ++ DR++ I G+++ R    SD   +   NRR+
Sbjct: 124 ALSQNRANAVTSLLAEHYSIASDRLTAI-GYSYDRPVDESDTDMAHTRNRRV 174


>gi|146300030|ref|YP_001194621.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146154448|gb|ABQ05302.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 712

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +I + +   FD +      E+ VVL ++ E++      VI I  HTD+   R   + N 
Sbjct: 594 RLIIKTDPIYFDYNLWYIRKESKVVLGRVVELMKKYPGMVIEIGSHTDS---RGNEKFNA 650

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            LS  RA S  + +++SG+   RIS   G+      I        S+  +  NRR + ++
Sbjct: 651 DLSQKRANSTREFIIQSGIEAKRISA-KGYGESVPIIKCKTDDACSEEEHELNRRSEFVI 709

Query: 339 ED 340
           + 
Sbjct: 710 KS 711


>gi|313677408|ref|YP_004055404.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312944106|gb|ADR23296.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 680

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 14/150 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254
           +  T+      +++   +FET    +L  II  +   +    +D  S+    +  + L K
Sbjct: 494 VGKTVDKSQLTSLITNKVFET--EILLEEIILDKAFELENIYYDFDSANIRADAAIELDK 551

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  +L  +    I +  HTDA   R  A  N  LS  RA SA   ++  G+   RI    
Sbjct: 552 LVTILKDNPPIKIELSSHTDA---RGEAAYNQELSKRRAESAVAYIISQGIDPSRIKA-R 607

Query: 314 GFAHHRLKIAS---DPMNSANRRIDILVED 340
           G+   +L I     +  +  NRR +  V +
Sbjct: 608 GYGESQLIIEDAQTEEEHETNRRTEFKVTE 637


>gi|294146707|ref|YP_003559373.1| OmpA-family protein [Sphingobium japonicum UT26S]
 gi|292677124|dbj|BAI98641.1| OmpA-family protein [Sphingobium japonicum UT26S]
          Length = 288

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   +    L          +  +  + G+TD++        N  LS  RA   
Sbjct: 177 FDTGKAVLSAQAKNDLCATAATAEGMSNALLLVVGYTDST---GDDEFNQELSEKRAGRV 233

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
              L ++ G    R+   +G A      ++D     + NRR+ + +   +G
Sbjct: 234 VNYLQQACGWKPYRMLTPTGMAEADPVASNDTIEGKAQNRRVAVNILVSKG 284


>gi|156974515|ref|YP_001445422.1| hypothetical protein VIBHAR_02232 [Vibrio harveyi ATCC BAA-1116]
 gi|156526109|gb|ABU71195.1| hypothetical protein VIBHAR_02232 [Vibrio harveyi ATCC BAA-1116]
          Length = 284

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 17/208 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L  +
Sbjct: 69  TKLHLEALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLELQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255
           +   LS             E  R+ + I  +I D  N    F   S+   P+ +  L + 
Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVANIYDLLNVDNQFAIDSAEINPKYMGHLAEA 185

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L       + + GH DA+        N +L+ DRA    + L   G++ DR+ +   
Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVED 340
                             NRR+ I V +
Sbjct: 242 VGETLPLYDGQTPAVRLTNRRVSIEVLN 269


>gi|89068039|ref|ZP_01155456.1| OmpA/MotB family protein [Oceanicola granulosus HTCC2516]
 gi|89046278|gb|EAR52335.1| OmpA/MotB family protein [Oceanicola granulosus HTCC2516]
          Length = 173

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F        PE   VL      L A++     I GH D          N  L   R
Sbjct: 61  DRVLFLVDQYTLTPEGRAVLDGQARWLQANADYRAVIEGHADEQ---GTREYNLALGSRR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR-IDIL 337
           A +  + L+  GV   R+  ++      L++ +++   + NRR + ++
Sbjct: 118 ANAVREYLVSQGVPSSRLQTVTYGKERPLEVCSAESCYAQNRRAVTVI 165


>gi|327313465|ref|YP_004328902.1| OmpA family protein [Prevotella denticola F0289]
 gi|326946064|gb|AEA21949.1| OmpA family protein [Prevotella denticola F0289]
          Length = 697

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +   PE+   L ++ ++L  +  V I +  HTD   +   A  N RLS  R
Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLEENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L   G+  DR++ + G+   R K
Sbjct: 586 ADAVVAYLTSHGIVRDRLTPV-GYGKERPK 614


>gi|126725522|ref|ZP_01741364.1| OmpA/MotB [Rhodobacterales bacterium HTCC2150]
 gi|126704726|gb|EBA03817.1| OmpA/MotB [Rhodobacterales bacterium HTCC2150]
          Length = 170

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FD   S        +L +    L  +   ++ + GH D          N  L   R
Sbjct: 60  DRVLFDVDQSTLNDAGRTLLSQQAAWLNSNPAYMVLVEGHADEQ---GTRAYNLALGDRR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           A +A   L+  GV   R+S ++ F   R     + +   S NRR  I++
Sbjct: 117 ATAARAYLVSQGVDASRLSTVT-FGKERPLEICSQEACYSQNRRAVIIL 164


>gi|54302322|ref|YP_132315.1| outer membrane protein OmpA [Photobacterium profundum SS9]
 gi|46915744|emb|CAG22515.1| hypothetical outer membrane protein OmpA [Photobacterium profundum
           SS9]
          Length = 324

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     + I  LQ I + L +  E  + + GHTD+   R     N  LS +RA   
Sbjct: 215 FAFDSDTLSQQDIDQLQPIAQRLVNFPETELFVIGHTDS---RGAEAYNQNLSEERAAVV 271

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
              L    G+ + RI +  G         +D  +    NRR+++ 
Sbjct: 272 AGYLATHFGIEQSRI-QAQGRGELEPVATNDTEDGRGQNRRVEVF 315


>gi|114321319|ref|YP_743002.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227713|gb|ABI57512.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 276

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
              L  ++A+N+ +    E  R        D     +FD  S++   E    ++++   L
Sbjct: 127 RRLLCEIMAENLARERTVEVERVVYRTLSTD----VLFDFDSAVLRAEGQDTIREVAAGL 182

Query: 260 AH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS-EDRISKISGFA 316
                  ++ I GHTD     +    N RLS  RA +    L+K+G S  D +++  G A
Sbjct: 183 QKEFIDPLVVIVGHTD--RIGDPGY-NQRLSERRADAVMDALLKNGFSRRDVVAQGRGEA 239

Query: 317 HHRLKIASDPMNSA-------NRRIDILVEDR 341
              +    D    A       NRR+++ V +R
Sbjct: 240 EPVVFCEGDRATPALIACLSPNRRVEVQVLER 271


>gi|296329419|ref|ZP_06871912.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153464|gb|EFG94289.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 153

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+    +  FD   S   P+   +L  I E +  +   I+I GHTD+    + A  N++
Sbjct: 61  TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 117

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           LS  RA S    L++ G+SEDRI  I      +   
Sbjct: 118 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIA 153


>gi|218507201|ref|ZP_03505079.1| putative outer membrane protein, OmpA family [Rhizobium etli Brasil
           5]
          Length = 208

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V   I +VL         I GHTDA       + N  LS  R
Sbjct: 93  FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 149

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 150 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 194


>gi|307822249|ref|ZP_07652481.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
 gi|307736815|gb|EFO07660.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96]
          Length = 100

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
               + + I GHTD     +  +    LS  RAY+ +  L   G+S DRI +  G+A   
Sbjct: 14  KRQPDKVLIEGHTDNVGSNSTHQG---LSDRRAYAVWTALNDMGISSDRI-RTRGYADAY 69

Query: 320 LKIASDPMNSA--NRRIDILVEDRQG 343
               +D       NRR++I++ D  G
Sbjct: 70  PVAGNDTTAGRQLNRRVEIILSDANG 95


>gi|255008700|ref|ZP_05280826.1| putative outer membrane protein [Bacteroides fragilis 3_1_12]
 gi|313146435|ref|ZP_07808628.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135202|gb|EFR52562.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 399

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 209 DNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
           D IV+ ++ +      ++   I D  +   F     +   E+ + L KI ++L       
Sbjct: 254 DRIVERIVEKRVEVPTVVESHICDLFDNIHFAFDKDVVTSESELTLDKIADLLKSYPDNN 313

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGFAHHRLKIA 323
             I G+TDA   R     N  LS  RA + Y+ L+K  V +   +   +   A       
Sbjct: 314 FLITGYTDA---RGGDNYNMDLSKRRAKAVYRALLKRQVPQHMLKWRGVGYHASSVPASG 370

Query: 324 SDPMNSANRRIDI 336
            D +   +R++ I
Sbjct: 371 PDKVRMGDRKVSI 383


>gi|254450850|ref|ZP_05064287.1| peptidoglycan-associated lipoprotein [Octadecabacter antarcticus
           238]
 gi|198265256|gb|EDY89526.1| peptidoglycan-associated lipoprotein [Octadecabacter antarcticus
           238]
          Length = 175

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +  +F+  +S         L      L+ +++ ++ I GH D          N  L   R
Sbjct: 65  DRVLFEVDTSTLTAVGRNTLDGQAGWLSTNSDYLAVIEGHADEQ---GTREYNLALGARR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR-IDIL 337
           A +  + L+  G++  RI  +S      L + S+    + NRR + I+
Sbjct: 122 ANAVREYLISRGLASSRIRTVSYGKERPLAVCSEESCYAQNRRAVTII 169


>gi|83312347|ref|YP_422611.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82947188|dbj|BAE52052.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 410

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 230 DQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           D R + M  FD  S+   P+ +  L++     A      +S+ G+TD       A  N R
Sbjct: 170 DVRRSFMVNFDLGSAKLSPQALQTLKEAAAAQAQMYAPLVSVAGYTDTL---GSADANLR 226

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           LS  RA +    L K GV+   I   +      L +A   +   + NRR++I +
Sbjct: 227 LSRQRADAVTAELTKLGVNPA-IIAENALGESSLAVATGDNKAEAKNRRVEITL 279



 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 236 MFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   SS     +   +   +        + +++ G TD +     A  N RLS +RA +
Sbjct: 314 FFLPGSSRLGTADIERLKMVVAAQKNMKPKTVTVVGFTDQT---GSAATNARLSRERAQA 370

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
               + K G S   +           +      +   RR++IL
Sbjct: 371 VAAEIAKLGGSTTSVEA------RPGETWGSSYDGQARRVEIL 407


>gi|146329268|ref|YP_001210055.1| OmpA domain-containing protein [Dichelobacter nodosus VCS1703A]
 gi|146232738|gb|ABQ13716.1| OmpA domain protein [Dichelobacter nodosus VCS1703A]
          Length = 194

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +I V+ +    L    +  + + GHTD    R     N  L   RAYS 
Sbjct: 94  FSYDSAQLDSRSIAVITEHARYLRDHPDTRVVLEGHTDE---RGSREYNIGLGERRAYSV 150

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            ++  + GV++ ++ ++  +   R  +  +++   + NRR+ I+
Sbjct: 151 KRIFEQQGVAQTQM-RVLSYGEERPALWCSNESCYARNRRVVII 193


>gi|119471346|ref|ZP_01613818.1| hypothetical protein ATW7_16907 [Alteromonadales bacterium TW-7]
 gi|119445622|gb|EAW26906.1| hypothetical protein ATW7_16907 [Alteromonadales bacterium TW-7]
          Length = 1559

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 70/207 (33%), Gaps = 24/207 (11%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
              +        K L K   + K         L  +     +A   +  LQ +   I + 
Sbjct: 469 PPETPEAMERYNKSLGKKLGIPKVAMDATGNALNIIDLTTNIAALGQTTLQQIGTNIPNL 528

Query: 203 LSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL----Q 253
                    VA++  + +  +     ++I          F  +S     +    +    +
Sbjct: 529 AQAKQHYKTVANDYFEHLSAKEIVKDVVIE-------GTFSLNSEQVTDDYRNTILQQSE 581

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISK 311
            + + L  +    +++ GHT      N    N  LS  RA +   +L+ ++G+ E RI  
Sbjct: 582 AVIKALKQNESLKVTVAGHTCD--IGNYDY-NMALSERRAEAVKHILVTQAGIDEARIE- 637

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDI 336
           + G  + +       +   + NRR+ I
Sbjct: 638 VLGLGYAQPLINNKDEASRAQNRRVHI 664


>gi|46203195|ref|ZP_00208848.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 170

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  SS   P     L K    L   +     I GH D    R        L   R
Sbjct: 60  DRVFFESDSSDLTPTATATLDKQASWLQRYSRYSFLIEGHADERGTREYNYS---LGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337
           A +    L   G++  R+  +S +   R     + ++  S NRR + +L
Sbjct: 117 AQAVLDYLTSRGIAPSRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164


>gi|325860329|ref|ZP_08173451.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|325482208|gb|EGC85219.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
          Length = 697

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +   PE+   L ++ ++L  +  V I +  HTD   +   A  N RLS  R
Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLEENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L   G+  DR++ + G+   R K
Sbjct: 586 ADAVVAYLTSHGIVRDRLTPV-GYGKERPK 614


>gi|325275196|ref|ZP_08141163.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324099683|gb|EGB97562.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 309

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I E +        + + GH+D          N  LS  RA +
Sbjct: 179 FPGGGIELDDAAKARLDVILEYMKADPSVNHVELNGHSDN---SGNRLTNRDLSRRRALA 235

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
                   G+ +++I+ +           ++     + NRR++I ++ 
Sbjct: 236 VADYFKAHGIKDEQIT-VRFHGERYPVAKNNTAANRARNRRVNIELDR 282


>gi|27462205|gb|AAO15380.1|AF330622_1 outer membrane protein [Helicobacter bizzozeronii]
          Length = 172

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F  +SS   P+   VL++  E L       +++ GH D    R     N  L   R
Sbjct: 62  DRVFFSLNSSSIEPDAEHVLKRQAEWLLRYPHYFVTVEGHADD---RGTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           + +    L+  GVS  R+  IS +   R     D  +  + NRR+ + +   +G
Sbjct: 119 SVAVRDYLVSLGVSSQRMRTIS-YGKERPVAVCDDNSCWNQNRRVVLTINSVKG 171


>gi|153003801|ref|YP_001378126.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027374|gb|ABS25142.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 171

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K +       G       ++N   F   +    P     ++++   L
Sbjct: 29  KKAAGSATVGKLEKQINKRLLEEG-------RKNQCSFKTDTDELEPGCDAKMKRLANAL 81

Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             + + ++          + GHTD+      A+ N  LS  RA    + L+ +G+ +D I
Sbjct: 82  VDAKKQLNGAGVQNFKFVVSGHTDS---SGSAKHNDALSAKRAAVVERELVANGIPKDEI 138

Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILVE 339
             + G    R  +  D      + NRR ++ V+
Sbjct: 139 QSV-GMGSKRPLVKPDDTPAKKAKNRRYELQVK 170


>gi|84688003|ref|ZP_01015866.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84663984|gb|EAQ10485.1| OmpA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 142

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKI---GEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           Q    +F   S     +    L++        A+     ++ GHTD+   R     N RL
Sbjct: 35  QNTDVLFKTDSYQLTAQGQQWLRQFFASAGAFAY-----AVYGHTDS---RASDEYNMRL 86

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           S +RA +   V  +SG     + ++ GF   R    ++       NRR++I+
Sbjct: 87  SQNRANTVAGVARQSGAV---VDRVVGFGERRPIAPNNSAANMQKNRRVEIV 135


>gi|325954863|ref|YP_004238523.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437481|gb|ADX67945.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 500

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIAR 282
           + +  + +  +F+ +S   +P +   ++   ++L           I GH D    R    
Sbjct: 369 VEVAKRLSNILFEYNSDKIVPSSYEDVRIAAQILNSEDLLANSYYIDGHADQ---RGRDA 425

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            N  LSL RA +   +L++ G  + +     G    +L    +       NRR+++L
Sbjct: 426 YNKALSLKRAQALVNILVERGNVDRKRLTARGLGKTQLLCTENTEECYQRNRRVEVL 482


>gi|254475683|ref|ZP_05089069.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214029926|gb|EEB70761.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 177

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S         L      L  + + I +I GH D          N  L   R
Sbjct: 67  DRVLFAVDQSTLSEAAKATLVGQARWLTSNPDYIVTIEGHADEQ---GTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+  R+ ++  +   R     +++   + NRR
Sbjct: 124 ANAAREFLISQGVAGSRL-QVVSYGKERPLEICSNEACYAKNRR 166


>gi|126726180|ref|ZP_01742022.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2150]
 gi|126705384|gb|EBA04475.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2150]
          Length = 305

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           ++  S L+        +  +   +  G+L+         +F   S+         L+ + 
Sbjct: 165 EETPSVLTPDPVSPKTETPVSTVSDDGVLVL-----EDLLFQPGSADLTAGDYASLENLA 219

Query: 257 EVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY-QVLMKSGVSEDRISK-IS 313
            +L  + E  +I  GHTDA         N  +S  RA S   +++ +  +S DR+S    
Sbjct: 220 ALLKENPEKKAILVGHTDAV---GALEVNIAISEKRAISVMTRMVEQYEISADRLSAKGV 276

Query: 314 GFAHHRLKIASDPMNSANRRI 334
           GF   R    +D     NRR+
Sbjct: 277 GFLAPRASNDTDEGRQKNRRV 297


>gi|269139251|ref|YP_003295952.1| OmpA/MotB domain protein [Edwardsiella tarda EIB202]
 gi|267984912|gb|ACY84741.1| OmpA/MotB domain protein [Edwardsiella tarda EIB202]
          Length = 162

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           +++   F  T  G            +F  + +   PE+   + ++G  L+        + 
Sbjct: 36  VLQQQGFTPTPEGWS---FGMSEKVLFGNNQATLRPESQAHVAELGHALSQVAILHARLD 92

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328
           G+TD        + N +LSL RA      +   G+    ++ +  G ++     A+    
Sbjct: 93  GYTDNY---GTDQYNQQLSLKRADKVADAMASGGMPRANLTTRGMGKSNPIADNATRQGR 149

Query: 329 SANRRIDILVE 339
           + NRR+ I+++
Sbjct: 150 AENRRVAIVIQ 160


>gi|91224838|ref|ZP_01260098.1| hypothetical protein V12G01_01555 [Vibrio alginolyticus 12G01]
 gi|91190384|gb|EAS76653.1| hypothetical protein V12G01_01555 [Vibrio alginolyticus 12G01]
          Length = 1581

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 28/199 (14%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           + + ++  ++K+    E      L++  +       + + L + +        + N +  
Sbjct: 536 QLVNQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEEKLEQALKDARDQ--SGNQIDA 593

Query: 215 VLFETTRT-GILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIR 269
           +L  ++R  GI I          F+          P    +   +  VL +     + I 
Sbjct: 594 ILVNSSRGAGIKIEFA-------FNSREKELKDHAPIFKQLAASLANVLENEPNLRVEIE 646

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK------- 321
           GH          + N ++S +RA  A ++LMK   V E R+  ++ F   +         
Sbjct: 647 GHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFEGRV-SVAAFGESKPVYVPKQGE 702

Query: 322 --IASDPMNSANRRIDILV 338
               ++P    NRR+ I +
Sbjct: 703 KVDRNNPNLRQNRRVVIRI 721


>gi|170693033|ref|ZP_02884194.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170142031|gb|EDT10198.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 259

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 17/120 (14%)

Query: 232 RNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
               +F    S      P     L    E +        I + GHTD          N  
Sbjct: 140 EGEALFPFGKSSLNSMLPRGRAELDAAIEKIRKEDGVTRIDVVGHTDRI---GSDESNRA 196

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILV 338
           LS  RA +    L+  G+  +RI + SG    +      P            +RR+ I +
Sbjct: 197 LSQARAETVKAYLVAHGLDAERI-RASGAGSSQPVSHCPPGETPAVIACLQKDRRVTIAI 255


>gi|307293378|ref|ZP_07573224.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306881444|gb|EFN12660.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 291

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   +    L          +  +  + G+TD++        N  LS  RA   
Sbjct: 180 FDTGKAVLSAQAKNDLCATASTAEGMSNALLLVVGYTDST---GGDEFNQELSEKRAGRV 236

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
              L ++ G    R+   +G A      ++D     + NRR+ + +   +G
Sbjct: 237 VNYLQQACGWKPYRMLTPTGMAKADPLASNDTAEGKAQNRRVAVNILVSKG 287


>gi|320538522|ref|ZP_08038383.1| OmpA family protein [Treponema phagedenis F0421]
 gi|320144629|gb|EFW36384.1| OmpA family protein [Treponema phagedenis F0421]
          Length = 1347

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 227  SIIDQRNTPMF-DKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGH--TDASPFRNIAR 282
            SII ++N P F D   +        VL++I ++L       I + GH  T     R    
Sbjct: 1230 SIIFRKNEPDFQDLPQATVNKNL-QVLKRIAQILNKFPDYKIRVEGHANTTTGTLREERE 1288

Query: 283  DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDILV 338
                LS  RA +  Q L+++GV   R++   G          +D  N   NRR++ ++
Sbjct: 1289 YLLPLSEKRAEAIRQYLIENGVRASRLTA-EGKGGTEPVADFTDRNNWWKNRRVEFIL 1345


>gi|320352974|ref|YP_004194313.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121476|gb|ADW17022.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 359

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD   +   PE    L ++G +L  +  V + + G  D+         N RLS  R
Sbjct: 250 NNILFDFDKAFIRPEHHAQLDQLGRLLVANPHVYVVLSGFCDSL---GSEAYNIRLSQRR 306

Query: 292 AYSAYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDILV 338
           A S  + L K   + +DRI     G+A+     A++     NRR+ I++
Sbjct: 307 AESVRRYLQKKFTIKKDRILLYWYGYANPVASNATEEGRQLNRRVTIVL 355


>gi|126662535|ref|ZP_01733534.1| OmpA family protein [Flavobacteria bacterium BAL38]
 gi|126625914|gb|EAZ96603.1| OmpA family protein [Flavobacteria bacterium BAL38]
          Length = 621

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +V + ++  ++   T   +++          F+ + S    +    L K+  V+    
Sbjct: 489 EQVVVEALLNPIIPIITEKEVILQ------PIFFEFNKSNITADGAAELDKLVAVMNEYP 542

Query: 264 EVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           E++     HTD+   R     N +LS  RA S  Q L+  GV+++RIS   GF     K+
Sbjct: 543 EMVIFAKSHTDS---RGSDSYNIKLSDRRAKSTVQYLISKGVAKERISG-QGFGESEPKV 598

Query: 323 A----SDPMNSANRRIDILVEDR 341
           A    ++  ++ NRR + L+  +
Sbjct: 599 ACKSCTEEEHAQNRRSEFLIVKK 621


>gi|110639062|ref|YP_679271.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281743|gb|ABG59929.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 380

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +F +S S  LP+    L  I E +   +   +   GHTD       A+ N  LS  R
Sbjct: 274 KNLLFSQSKSELLPQAAKELDMIAEWMNRETDVRVRFIGHTDNQ---GDAKLNVLLSEQR 330

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
                  L+  G++ DRI  + G+        +  +     NRR+++ + 
Sbjct: 331 VSKVKAYLVSKGIAADRIETV-GYGGAFPITDNAFEETRKLNRRVEMEIL 379


>gi|83950613|ref|ZP_00959346.1| OmpA domain protein [Roseovarius nubinhibens ISM]
 gi|83838512|gb|EAP77808.1| OmpA domain protein [Roseovarius nubinhibens ISM]
          Length = 641

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 32/298 (10%)

Query: 66  EQYFNPFGKNLMTASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           E+ F+     L TA   +F      PP  +    +       ++   +    G     K 
Sbjct: 320 EKSFDDVVGGLETALPDVFALHAVLPPPPTDAEVVIPEFVATLSPEGLVQLRGRLGSDKL 379

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
            + +++      +S         +            +     S  +     + P S +  
Sbjct: 380 RETVDSFARARFSSAGVHTKARVVEGLPADWPVRVLAGLESLSYLENGAVTVTPDSIDVT 439

Query: 184 LAMKRKKRLQDLAKKISSTLSG-------LVADNIVKGVLFETTRTGIL--ISIIDQRNT 234
                K     ++  ++ TL         +    ++  +    T    +  I +I     
Sbjct: 440 GNTGNKDASAQISGFLAETLGERGQFEIDVTYQEVLDPIAALPTPEECVSKIQLIVAERK 499

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
             F+  S         +L  I E+L    E  + I G+TD+         N +LS +RA 
Sbjct: 500 INFEPGSDKLDSNGAAILDDIAEILKKCGEIKLEIAGYTDSQ---GRESMNQQLSENRAR 556

Query: 294 SAYQVLMKSGVSEDRISKI-------SGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
           +         +   R+ ++        G+  +     +  D    ANRRI+  +   +
Sbjct: 557 AV--------LDGLRMRRVITSTYEAVGYGENDPIADNDSDEGREANRRIEFHLIKPE 606


>gi|146301688|ref|YP_001196279.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146156106|gb|ABQ06960.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 653

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD           V L KI  V+    +  I IR HTD+   R+ A+ N  LS  RA S 
Sbjct: 545 FDLGKWNITDAAAVELGKILAVMQEYPKMRIDIRSHTDS---RSSAKSNLVLSDKRAKSI 601

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              L+  G+   R+ +  G+   +L          S+  +  NRR + ++
Sbjct: 602 MAWLVSKGIDAKRL-RGKGYGESQLLNRCKDGVKCSEEEHLKNRRSEFMI 650


>gi|119775600|ref|YP_928340.1| OmpA family protein [Shewanella amazonensis SB2B]
 gi|119768100|gb|ABM00671.1| OmpA family protein [Shewanella amazonensis SB2B]
          Length = 187

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  S+    E    L  + + +      + ++GHTD          N+RLS +RA +  
Sbjct: 84  FDFGSAFVPFEAAAKLAWLAKSIETDHVSLLLQGHTDDI---GTEAANYRLSAERADNVA 140

Query: 297 QVL-MKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
             L M   + + RI+  S F        ++       NRR+DIL+ 
Sbjct: 141 ASLAMDFAIPKARITTAS-FGESMPVAPNNTEIGRQQNRRVDILIL 185


>gi|288959770|ref|YP_003450110.1| outer membrane protein [Azospirillum sp. B510]
 gi|288912078|dbj|BAI73566.1| outer membrane protein [Azospirillum sp. B510]
          Length = 203

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   P    V+   +  +L +    I + GHTD          N +LS+ RA +
Sbjct: 94  FFDWDKSTITPAADRVIGDAVSAILKNGGAKIQVVGHTDT---SGSPAYNQKLSVRRADA 150

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
             + L+  G+    I+   G    +L + + P     +NRR  IL
Sbjct: 151 VKKALVAKGIQAANIT-TEGKGESQLLVQTGPNVREPSNRRAQIL 194


>gi|302877290|ref|YP_003845854.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302580079|gb|ADL54090.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQK---IGEVLAHSTEVISIRGHTDASPFRNIARDN 284
           I+      +FD   +   PE   VL +    G  L   T  + I GH D        R N
Sbjct: 91  IVRLNAGTLFDFDRAEVKPEGKTVLDEKIVTGMKLHTDTGPLLIIGHADRI---GSERYN 147

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
            RLS  RA +    L++ GV   R+  + G         S+  
Sbjct: 148 QRLSERRANAVRDYLVEQGVGAQRL-SVQGKGESEPDPVSNTG 189


>gi|167623057|ref|YP_001673351.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353079|gb|ABZ75692.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 365

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+     +   ++++   +       ++I G    +     A  N  LS  RA S 
Sbjct: 254 FANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNT---GKADYNMDLSERRAASV 310

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
            ++L+    ++  R+S   G+   R  +  +S   N+ NRRI+  V D
Sbjct: 311 AEILINEYDIAPGRVSS-KGYGITRPLMEGSSAEANAVNRRIEAHVTD 357


>gi|117920980|ref|YP_870172.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117613312|gb|ABK48766.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 290

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++  +     +   L +I E L++  +V  + +  +TD+   R++   N ++S  RA S
Sbjct: 184 YEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
                + SG+ +DRI  + G    R   ++D     + NRR+ I +
Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDIEERALNRRVVIRI 285


>gi|54309710|ref|YP_130730.1| putative peptidoglycan-associated lipoprotein [Photobacterium
           profundum SS9]
 gi|46914148|emb|CAG20928.1| putative peptidoglycan-associated lipoprotein [Photobacterium
           profundum SS9]
          Length = 174

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           +   +    + Q  T  F   ++    +   +L+   E L   S   + + GH D    R
Sbjct: 57  SEQELRSQELRQEQTVYFKFDTAEIQADYQAMLEAHAEFLSNSSDVKVIVEGHADE---R 113

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
                N  L   RA +  Q L   GVS  +IS +S +   +  +   +D   + NRR
Sbjct: 114 GTPEYNIALGERRANAVVQYLQALGVSASQISIVS-YGEEKPLVLGHTDADYAKNRR 169


>gi|126740601|ref|ZP_01756288.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
 gi|126718402|gb|EBA15117.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
          Length = 644

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNW 285
           S+ D      F+  S+     +   L K  EVL       + I+GHTD+     + +   
Sbjct: 490 SLQDVTGKIHFEPGSATVAAGSSATLDKAAEVLELCGPIRLEIQGHTDSQGREGMNQS-- 547

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
            LS  RA S    L    +    I    G+        +D      ANRRI+  V
Sbjct: 548 -LSQARAQSILNELRARRIRTSTILA-KGYGESTPIATNDSEEGREANRRIEFKV 600


>gi|327398898|ref|YP_004339767.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411]
 gi|327181527|gb|AEA33708.1| OmpA/MotB domain protein [Hippea maritima DSM 10411]
          Length = 310

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +   P +   +++I  +L  +    + + GHTD+    ++   N +LS  RA + 
Sbjct: 208 FDFNKATIKPSSEPTIKEIARLLKENPSLKLYVVGHTDS--IGDLNY-NMKLSKKRAKAV 264

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L+K   ++ +R+    G        ++  +   S NRR++++
Sbjct: 265 VDELVKKYNINPNRLKA-FGVGPLAPVASNKTEEGRSKNRRVELI 308


>gi|157374383|ref|YP_001472983.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157316757|gb|ABV35855.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 189

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +  +      L ++ + L      + + G+TDA         N +LS  RA +  
Sbjct: 85  FEFAKAEVMFSQWKTLARLKQFLQRFDVNLCLLGYTDAM---GSLDLNQKLSAQRAMAVK 141

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
           Q+L++  G S  R   + G        +++     ++NRR++ +V+
Sbjct: 142 QILVEDYGFSSSRFV-VKGMGSESPIASNEKPEGRASNRRVEFVVD 186


>gi|124010476|ref|ZP_01695114.1| immunogenic 75 kDa protein PG4, putative [Microscilla marina ATCC
           23134]
 gi|123982378|gb|EAY23917.1| immunogenic 75 kDa protein PG4, putative [Microscilla marina ATCC
           23134]
          Length = 645

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L ++  +L  + +  I +  HTD+   RN ++ N +LS  R+ SA Q L+  
Sbjct: 544 IRPDAVKTLDELLVILYRNPKMRIGLSSHTDS---RNTSKYNVQLSQRRSQSALQYLVSR 600

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G+S  RI  +  F   +L          ++  +  NRR ++LV +
Sbjct: 601 GISPQRII-VDWFGETKLVTPCPDGVPCNETQHQLNRRTEVLVLE 644


>gi|315223626|ref|ZP_07865480.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287]
 gi|314946407|gb|EFS98402.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287]
          Length = 652

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+  V L KI EV+    +  I IR HTD+   R     N  LS  RA + 
Sbjct: 543 FDLNKSNIRPDAAVELAKIVEVMKQYPKMKIDIRSHTDS---RATDAYNLALSDRRAKAT 599

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            + ++K G+   R+    G+   +L          ++  + ANRR + +V  
Sbjct: 600 LEWIVKQGIDRKRLKA-KGYGETQLVNGCSNGVPCTEEQHQANRRSEFIVVS 650


>gi|256820526|ref|YP_003141805.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582109|gb|ACU93244.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 650

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+  V L KI EV+    +  I IR HTD+   R     N  LS  RA + 
Sbjct: 541 FDLNKSNIRPDAAVELAKIVEVMKQYPKMKIDIRSHTDS---RATDAYNLALSDRRAKAT 597

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            + ++K G+   R+    G+   +L          ++  + ANRR + +V  
Sbjct: 598 LEWIVKQGIDRKRLKA-KGYGETQLVNGCSNGVPCTEEQHQANRRSEFIVVS 648


>gi|153877096|ref|ZP_02004079.1| OmpA domain protein [Beggiatoa sp. PS]
 gi|152066440|gb|EDN65921.1| OmpA domain protein [Beggiatoa sp. PS]
          Length = 155

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +FD + S+   E    +Q++ + +A        I+GHTD+         N  LS  RA
Sbjct: 41  TVLFDTNKSMVKSEYYAEIQQVSDFMAKYPSTSTEIQGHTDS---SGSDDYNLNLSQQRA 97

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANR----RIDILVEDRQG 343
            +  +VL+    +S  R++ + G+   +    +        NR    RI+ +V+  +G
Sbjct: 98  DAVLEVLISQFNISPSRLAAV-GYGESQPIADNSTREGRQQNRRVVARIETVVKQIEG 154


>gi|110681204|ref|YP_684211.1| OmpA domain-containing protein [Roseobacter denitrificans OCh 114]
 gi|109457320|gb|ABG33525.1| OmpA domain protein [Roseobacter denitrificans OCh 114]
          Length = 625

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+      +  + +I +VL       + ++GHTD+     + R    LS  RA S 
Sbjct: 497 FEPGSATIDAAALTTMDQIADVLRVCGDLKLEVQGHTDSQGREEMNRS---LSQARAQSV 553

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
              L    V         G+        +D      ANRRI+  +   +
Sbjct: 554 LNELRARRVLTSNFIA-KGYGESNPIADNDTEEGREANRRIEFKLIRPE 601


>gi|77163684|ref|YP_342209.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|254435498|ref|ZP_05049005.1| peptidoglycan-associated lipoprotein, putative [Nitrosococcus
           oceani AFC27]
 gi|76881998|gb|ABA56679.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707]
 gi|207088609|gb|EDZ65881.1| peptidoglycan-associated lipoprotein, putative [Nitrosococcus
           oceani AFC27]
          Length = 187

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS    +   +++  G  LA   +  +++ GHTD    R     N  L   RA + 
Sbjct: 84  FEFDSSEIQQDDRPIVEAHGGYLAKHPDIKVTLEGHTDE---RGSREYNLALGERRANAV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
             +++  G SED++  +S +   R  +      +   NRR++IL
Sbjct: 141 RSLILLMGASEDQVEVVS-YGEERPAVDGQDEGAWQLNRRVEIL 183


>gi|149191535|ref|ZP_01869782.1| protein F-related protein [Vibrio shilonii AK1]
 gi|148834609|gb|EDL51599.1| protein F-related protein [Vibrio shilonii AK1]
          Length = 208

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   LQ++   L+      + I GHTD +    I   N +LS  RA S 
Sbjct: 104 FNTGSAHVASTSAQWLQQLASFLSGQQGIDVVIGGHTDNTGTVAI---NDKLSDKRAESV 160

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            Q L+   V   +I    G+  +  +  +      + NRR+++ +
Sbjct: 161 RQTLISQRV-PRQIIYTRGYGENVPECTNQTQYGKACNRRVELTL 204


>gi|84516651|ref|ZP_01004010.1| peptidoglycan-associated lipoprotein [Loktanella vestfoldensis
           SKA53]
 gi|84509687|gb|EAQ06145.1| peptidoglycan-associated lipoprotein [Loktanella vestfoldensis
           SKA53]
          Length = 176

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE   +L    + +L ++     I GH D          N  L   R
Sbjct: 65  DRVLFAIDQSTISPEGRTILDGQAQWLLTNADYRAVIEGHADEQ---GTREYNLALGFRR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +  + L+  GV   R+  ++ +   R     +++   S NRR
Sbjct: 122 ANAVREYLVSRGVPSARLE-VTSYGKERPIEVCSNEACYSQNRR 164


>gi|262360905|gb|ACY57626.1| hypothetical protein YPD4_0717 [Yersinia pestis D106004]
          Length = 208

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 76  SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 132

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D     + NRR++I +  +
Sbjct: 133 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 182


>gi|312114121|ref|YP_004011717.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219250|gb|ADP70618.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 509

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F ++S++   + +  + ++   L        + + G TD +        N  LSL+RA S
Sbjct: 406 FHRNSAVLDDKAMQDVPRLARFLKSDANGKDLLLLGFTDGT---GAFETNKALSLNRATS 462

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
               L+  GV  ++I+ + G+          SD   SANRR+++
Sbjct: 463 FKNALVAEGVPANKIT-VKGYGSLLPVGCNTSDAGQSANRRVEV 505


>gi|347157|gb|AAC36901.1| protein F [Pseudomonas fluorescens]
          Length = 296

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++  P +   ++ + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 218 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274

Query: 296 YQVLMKSGVSEDRISKISGFA 316
            QVL+K GV+  R++ + G+ 
Sbjct: 275 KQVLVKDGVAPSRVTAV-GYG 294


>gi|238750181|ref|ZP_04611684.1| OmpA domain protein [Yersinia rohdei ATCC 43380]
 gi|238711725|gb|EEQ03940.1| OmpA domain protein [Yersinia rohdei ATCC 43380]
          Length = 560

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 234 TPMFDKSSSIPLP--ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            P+FD +SS   P  +T  +L+ +  +L  + +  + I GH+D +        N +LS  
Sbjct: 444 APLFDSNSSKLKPNKQTNDILKSLLYLLEKNPDTKVLIIGHSDNT---GSPSFNMKLSEQ 500

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           RA      L+K+         + G        +++       NRR+++L+   Q
Sbjct: 501 RAQVVGDWLIKNSSIPVNNLIVRGKGALEPIASNNTKIGQDQNRRVEVLLLPTQ 554


>gi|197116693|ref|YP_002137120.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
 gi|197086053|gb|ACH37324.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
          Length = 204

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           D   T  FD  SS+        L    E L       + I G+TD    R     N  LS
Sbjct: 95  DALETIYFDFDSSLLSDTARATLAANLEKLKAKPGAALRIEGNTDE---RGSDDYNLALS 151

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             RA SA + L   G    ++  + G+   +  +  +     + NRR + ++  
Sbjct: 152 ERRAQSAKKYLQALGFPASKL-SVVGYGEEKPAVKGEGEEIWAKNRRDEFVIVR 204


>gi|114797292|ref|YP_760148.1| OmpA family membrane protein [Hyphomonas neptunium ATCC 15444]
 gi|114737466|gb|ABI75591.1| membrane protein, OmpA family [Hyphomonas neptunium ATCC 15444]
          Length = 544

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNI 280
           G  I +    +  +FD       PE    L ++   L    +   +++ GHTD++     
Sbjct: 419 GAEIRLS-LDSALLFDVGKYEIKPEAESALAELAAQLQTYGADIRVTVEGHTDST---GS 474

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           A  N  LS +RA S +  L            I G+   R     A++   + NRR+DIL+
Sbjct: 475 AASNQTLSENRARSVWDNLSGKISPVPEDVTIRGYGASRPVADNATEEGRAENRRVDILI 534

Query: 339 EDRQ 342
              +
Sbjct: 535 LPGK 538


>gi|254512183|ref|ZP_05124250.1| peptidoglycan-associated lipoprotein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535894|gb|EEE38882.1| peptidoglycan-associated lipoprotein [Rhodobacteraceae bacterium
           KLH11]
          Length = 169

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  + S   P+   VLQ   + +LA+   V +I GH D          N  L   R
Sbjct: 59  DRVLFAVNQSTLSPQAQTVLQGQADWLLANPDFVATIEGHADEQ---GTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+ +R++ +S +   R     +++   S NRR
Sbjct: 116 ANAAREYLISRGVAGNRLTTVS-YGKERPIEICSTEECYSKNRR 158


>gi|153834734|ref|ZP_01987401.1| inner membrane lipoprotein YiaD [Vibrio harveyi HY01]
 gi|148868823|gb|EDL67889.1| inner membrane lipoprotein YiaD [Vibrio harveyi HY01]
          Length = 222

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ +  +L    +  + I G+TD++        N  LS  RA S  Q L+   V+  R  
Sbjct: 133 LRGVARILVEYPDTSLVIDGYTDST---GSDSYNQTLSERRAESVRQYLVSQNVAPGRAI 189

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              G+          +    + NRR++I +   +
Sbjct: 190 A-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222


>gi|114327495|ref|YP_744652.1| outer membrane protein [Granulibacter bethesdensis CGDNIH1]
 gi|114315669|gb|ABI61729.1| outer membrane protein [Granulibacter bethesdensis CGDNIH1]
          Length = 149

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   +S P  +++ +L+          +  I + G+TD       A+DN  LS +RA +
Sbjct: 51  FFAPDASQPKTDSLPILKVAVTYAKDHPDQNIIVVGYTDPV---GSAKDNHDLSEERADT 107

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
             + L+K+G+ + RI+   G    + +  +       RR++I
Sbjct: 108 IRKDLIKAGIPQARITA-RGHGQTQPEWNNQES----RRVEI 144


>gi|255533625|ref|YP_003093997.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255346609|gb|ACU05935.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 679

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              +++ + +    ++   L  +  ++  +    I +  HTD+   +     N  LS  R
Sbjct: 566 KDVLYEFNKADLTEDSKGKLDYLYTIMVDNPTIEIELSSHTDS---KGGEAYNMDLSERR 622

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVEDR 341
           A S    L+  G+ ++R++   G+   R    ++           + NRR +  V  +
Sbjct: 623 AKSCVDYLIGKGIPKNRMTS-KGYGKTRPIAPNEFPNGKDNPAGRALNRRTEFKVTKK 679


>gi|172064675|ref|YP_001812325.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171998160|gb|ACB69076.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 552

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +   +  +F    +   PE     +   +  + A+  + + I GH D+       R N  
Sbjct: 434 VQIDSLSLFASGKATFSPEAAHRELAHALQLIQANPDQRVLIEGHADSE---GSPRANIL 490

Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
           LS  RA +    L    G+S  R   I G    R     +S+   + NRR+D+ +
Sbjct: 491 LSEARARAIRDWLAAKGGLSVARF-AIQGLGDVRPIADNSSEAGRALNRRVDVSL 544


>gi|117925108|ref|YP_865725.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608864|gb|ABK44319.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1]
          Length = 322

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S     + + VL   +  +  H+   + ++GHTD+   R     N +LSL RA S 
Sbjct: 220 FNTGSWELDAKALSVLNAAVATMKQHAAIRVEVQGHTDS---RADDTFNKKLSLKRAESV 276

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              + K G++ DR    + F   +L     +      NRR+++
Sbjct: 277 IWYMTKQGLARDRFVAAA-FGEQKLLNSEKNSDERLVNRRVEL 318


>gi|83949565|ref|ZP_00958298.1| OmpA domain protein [Roseovarius nubinhibens ISM]
 gi|83837464|gb|EAP76760.1| OmpA domain protein [Roseovarius nubinhibens ISM]
          Length = 333

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P     L  +   L       I++ GHTDA+  R+I      +S  RA + 
Sbjct: 228 FATGSATLGPGPFASLTALAAYLKGDGARRIALVGHTDATGGRDINIS---ISRQRARAV 284

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
              L++  GV   ++    G  +     ++  +    ANRR++ ++   Q
Sbjct: 285 LDRLVEGHGVPRAQLEA-DGVGYLAPIASNLTEAGRQANRRVEAVLLTTQ 333


>gi|332292539|ref|YP_004431148.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170625|gb|AEE19880.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 652

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+  + L K+   +    + VIS+R HTD+   R     N  LS  RA S 
Sbjct: 544 FDYNKSDIRPDAALELTKVISAMKQVPDMVISVRSHTDS---RGKDDYNLSLSDRRAKST 600

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
              ++  G+  +RIS   G+   +L  +       ++  +  NRR + +V  +
Sbjct: 601 VAYIISRGIDANRISG-QGYGETQLVNSCNNNADCTEEQHQLNRRSEFIVITQ 652


>gi|312959042|ref|ZP_07773561.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311286812|gb|EFQ65374.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 256

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F  +S          L  +   L   +   I I
Sbjct: 97  ESMANTGVEVQRQGDQIKLI-MPGNITFATNSDAISSSFYQPLNNLANSLKQFNQNTIQI 155

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
            G+TD++      + N  LS  RA S    L   GV+   +S   G        ++    
Sbjct: 156 VGYTDST---GSRQLNMDLSQRRAQSVANYLTSQGVNGANLSA-RGAGPDNPIASNADVN 211

Query: 327 MNSANRRIDI 336
             + NRR+++
Sbjct: 212 GRAQNRRVEV 221


>gi|253700147|ref|YP_003021336.1| hypothetical protein GM21_1522 [Geobacter sp. M21]
 gi|251774997|gb|ACT17578.1| conserved repeat domain protein [Geobacter sp. M21]
          Length = 1984

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 226  ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
            I +       +FD+  S    E   +L+    VL     E + + GHTD     ++   N
Sbjct: 1706 ILLTLSGGAFVFDR--SELTLEAKRLLKGAARVLRARPREKVIVEGHTDG--IGSVEY-N 1760

Query: 285  WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
              LS  R  +A   L++  G++  R+ +   +   R    +   P    NRR+++
Sbjct: 1761 MALSQRRCDAAADYLVREEGIARSRLLR-RWYGKSRPVADNVTSPGRRMNRRVEL 1814


>gi|91224536|ref|ZP_01259798.1| putative outer membrane protein [Vibrio alginolyticus 12G01]
 gi|269968325|ref|ZP_06182346.1| outer membrane protein, putative [Vibrio alginolyticus 40B]
 gi|91190878|gb|EAS77145.1| putative outer membrane protein [Vibrio alginolyticus 12G01]
 gi|269827061|gb|EEZ81374.1| outer membrane protein, putative [Vibrio alginolyticus 40B]
          Length = 204

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 213 KGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +G   +    G  I   D      +F   S    P     ++++ + L       SI  H
Sbjct: 59  EGSEVDNDGCGEYIKASDNMQVRILFANDSDEINPVFRRQVRELSDFLKEYPTT-SIELH 117

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329
             AS        N  LS  RA +  + L+   +   R+ +I GF    L      +  ++
Sbjct: 118 GYASKVGGSKH-NQDLSERRARNVREALLSYDIEPSRV-RIVGFGDTHLAQQGTDEVSHA 175

Query: 330 ANRRIDILVEDRQG 343
            NRR+   V   +G
Sbjct: 176 LNRRVTASVVGYKG 189


>gi|238782712|ref|ZP_04626742.1| OmpA family protein [Yersinia bercovieri ATCC 43970]
 gi|238716372|gb|EEQ08354.1| OmpA family protein [Yersinia bercovieri ATCC 43970]
          Length = 168

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD       P     +Q IG+ L         + GHTDA         N +LS  R
Sbjct: 61  NKVLFDSDVRKLNPSGEQTVQNIGKALTAVGITHFRVDGHTDAM---GEDSYNQQLSYQR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+    I  + G         +      + NRR+ ++V
Sbjct: 118 AAAVADTLTTIGIPRKNID-VRGRGKLEPVADNRTAKGRAENRRVAMIV 165


>gi|329296508|ref|ZP_08253844.1| outer membrane protein A [Plautia stali symbiont]
          Length = 356

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSDQY-NQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336
             RA S    L+  G+  ++IS   G         +  D +   N         RR++I
Sbjct: 285 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRNALIDCLAPDRRVEI 342


>gi|260770556|ref|ZP_05879489.1| protein F-related protein [Vibrio furnissii CIP 102972]
 gi|260615894|gb|EEX41080.1| protein F-related protein [Vibrio furnissii CIP 102972]
 gi|315181629|gb|ADT88542.1| OmpA family protein [Vibrio furnissii NCTC 11218]
          Length = 209

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 211 IVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           +  G+ +E      +++ + D      FD  SS    ++   L  +G  L+      I I
Sbjct: 80  LDNGIDYEVMPGNHVMVKLKDTVK---FDTGSSNVSQDSAYWLSVMGSFLSRERGIDIVI 136

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            GHTD +      R N  LS+ RA      L+   V+ D I    G+  +     +    
Sbjct: 137 DGHTDNT---GKPRFNDALSVKRAQMVKNTLINKNVARDAIY-TRGYGEYVPACNNGTYE 192

Query: 329 SA--NRRIDIL 337
               NRR+++L
Sbjct: 193 GRACNRRVELL 203


>gi|255530915|ref|YP_003091287.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343899|gb|ACU03225.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 175

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S +    +  VL +I   +         + GH+        A  N  LS+DRA S 
Sbjct: 73  FEFNSGVLKTASFEVLDRIAAEMKKDPAVKFVLNGHSS---IEGSAAHNMSLSVDRANSV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
              L+ +GVS   +  I G+   +   ++      + NRR++
Sbjct: 130 KLYLVNAGVSAANL-SIKGYGATQPVASNSTEEGKAQNRRVE 170


>gi|89075798|ref|ZP_01162186.1| putative peptidoglycan-associated lipoprotein [Photobacterium sp.
           SKA34]
 gi|90580128|ref|ZP_01235936.1| putative peptidoglycan-associated lipoprotein [Vibrio angustum S14]
 gi|89048530|gb|EAR54105.1| putative peptidoglycan-associated lipoprotein [Photobacterium sp.
           SKA34]
 gi|90439013|gb|EAS64196.1| putative peptidoglycan-associated lipoprotein [Vibrio angustum S14]
          Length = 180

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   +S   PE   +L+     L       + + GH D    R     N  L   RA +
Sbjct: 79  FFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADE---RGTPEYNIALGERRANA 135

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             Q L   GV   ++S +S +   +  +   +D   + NRR
Sbjct: 136 VAQYLQALGVPASQLSIVS-YGEEKPLVLGHTDADYAKNRR 175


>gi|330719944|gb|EGG98406.1| General secretion pathway protein A [gamma proteobacterium
           IMCC2047]
          Length = 141

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLS 288
           +R+T  +    +   PE +  L  I   +      + + + GHTD+         N R+S
Sbjct: 31  ERSTIFYASGRTKLAPEVLEQLDLIIRYVKADKRIKRVVVDGHTDS---AGDKESNIRVS 87

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
             RA        K+G+S  RI             A+D     + NRR+ I ++ 
Sbjct: 88  KQRANLVVAYFKKAGISSKRIVM-RWHGDRYPTAANDTDEGQARNRRVTIRLDR 140


>gi|224370138|ref|YP_002604302.1| Pal [Desulfobacterium autotrophicum HRM2]
 gi|223692855|gb|ACN16138.1| Pal [Desulfobacterium autotrophicum HRM2]
          Length = 197

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 16/185 (8%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
            K    E      E    P  + +     K++   + + ++ +   S L    + K    
Sbjct: 26  KKPVVSEPMGAALEGTVDPDAAAKAAALAKQRAMEEAMLREKALKESALKDAELAKQAAA 85

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276
            +  T   I          F   S+   P +  +L++    L  +  V + + GH D   
Sbjct: 86  RSRFTNQNIH---------FAYDSADLTPMSRTLLKEKALWLGENPGVMVVVEGHCDD-- 134

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
            R     N  L   RA+SA + L   G++E R+S IS +   R      ++   + NRR 
Sbjct: 135 -RGTMEYNLALGDRRAFSAKKFLTDLGIAESRLSTIS-YGEERPIDPANNETAWAKNRRA 192

Query: 335 DILVE 339
             +++
Sbjct: 193 QFVIK 197


>gi|160889745|ref|ZP_02070748.1| hypothetical protein BACUNI_02175 [Bacteroides uniformis ATCC 8492]
 gi|270294032|ref|ZP_06200234.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478785|ref|ZP_07937937.1| OmpA family protein [Bacteroides sp. 4_1_36]
 gi|156860737|gb|EDO54168.1| hypothetical protein BACUNI_02175 [Bacteroides uniformis ATCC 8492]
 gi|270275499|gb|EFA21359.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905045|gb|EFV26847.1| OmpA family protein [Bacteroides sp. 4_1_36]
          Length = 224

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +S+    E    L+++ ++L       I+I GHTD          N ++S +RAY+
Sbjct: 112 LFGFNSAALSNEAKASLRELAQILKEDPTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRRIDI 336
               L   GVS  +  K+   G+  +   +++D     NRR+++
Sbjct: 169 VENYLQDCGVSPAQFKKVEGVGYNEYDESLSAD----QNRRVEV 208


>gi|300112859|ref|YP_003759434.1| peptidoglycan-associated lipoprotein [Nitrosococcus watsonii C-113]
 gi|299538796|gb|ADJ27113.1| peptidoglycan-associated lipoprotein [Nitrosococcus watsonii C-113]
          Length = 187

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS    +   +++  G  LA   +  I + GHTD    R     N  L   RA + 
Sbjct: 84  FEFDSSEIQQDDRPIVEAHGGYLAKHPDIKIILEGHTDE---RGSREYNLALGERRANAV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
             +++  G SE+++  +S +   R  +      +   NRR++IL
Sbjct: 141 RSLILLMGASEEQVEVVS-YGEERPAVDGQDEGAWQLNRRVEIL 183


>gi|258544708|ref|ZP_05704942.1| outer membrane protein A [Cardiobacterium hominis ATCC 15826]
 gi|258520045|gb|EEV88904.1| outer membrane protein A [Cardiobacterium hominis ATCC 15826]
          Length = 201

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD   S   P     LQ +   L       + I++ GHTD+   +     N +LS  RA 
Sbjct: 83  FDFDKSNLKPAGKQALQDLAGQLNQRGANIQKITVVGHTDS---KGTDAYNQKLSERRAS 139

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
           +    L ++GV   ++ +  G           +    + NRR+++ V+
Sbjct: 140 TVANYLAENGV-PSQLIEAYGQGESHPVATNKTAEGRAQNRRVEVNVD 186


>gi|302346547|ref|YP_003814845.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
 gi|302150388|gb|ADK96649.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
          Length = 653

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I++    +   +D   +   PE+   L  +  +L  +  V I +  HTD   +   A  N
Sbjct: 478 INVPVLIDNIFYDFDKATLRPESEKALDALVNLLKENPNVTIELSAHTD---YLGSADYN 534

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            RLS  RA +    L   G+  DR++ + G+   R K
Sbjct: 535 KRLSQRRADAVVAYLTAHGIVRDRLTPV-GYGKERPK 570


>gi|254506121|ref|ZP_05118265.1| outer membrane protein [Vibrio parahaemolyticus 16]
 gi|219550939|gb|EED27920.1| outer membrane protein [Vibrio parahaemolyticus 16]
          Length = 211

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
              F+   S    ++  VL ++  ++  ++  + + GHTD     +    N+ L L R+ 
Sbjct: 108 RVYFNFDQSTLTQQSEYVLTRVIRMVESNSSNLELAGHTDN--VGDAGY-NFSLGLKRSK 164

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           S    L+  GV   R++  + +   +  + +  D     NRR++I
Sbjct: 165 SVEDYLIDQGVDPKRVT-TTSYGETKPFVDNMSDENRKLNRRVEI 208


>gi|56698574|ref|YP_168951.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680311|gb|AAV96977.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 304

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S          L ++ ++L A++   + + GHTD          N  LS  RA + 
Sbjct: 200 FATGSDALGEGPFDTLAELAQLLSANAELRLVLVGHTDTV---GGLEPNIELSRKRAGAV 256

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
              L++  G+  D+IS   G  +     ++       ANRR++ ++  +
Sbjct: 257 RARLVEEYGIPADQISA-DGVGYLAPIASNLTPEGREANRRVEAVMLSQ 304


>gi|84685242|ref|ZP_01013141.1| OmpA domain protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666974|gb|EAQ13445.1| OmpA domain protein [Rhodobacterales bacterium HTCC2654]
          Length = 797

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S          + KI +VL   +   + I GHTD+         N  LS  RA S 
Sbjct: 499 FAPGSVEIEASAAATIDKIADVLRDCAEVPMEIGGHTDSQ---GSEELNKALSQQRANSV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
              L+   +    I    G+        +D       NRRI+  +  ++
Sbjct: 556 LNALLARRILTSNIVA-HGYGEEVPIADNDTEAGREANRRIEFRLISQR 603


>gi|332286730|ref|YP_004418641.1| OmpA/MotB [Pusillimonas sp. T7-7]
 gi|330430683|gb|AEC22017.1| OmpA/MotB [Pusillimonas sp. T7-7]
          Length = 220

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 201 STLSGLVADNIVKGVLFETT---RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            T+   V  +    +  + T      + ++I    +   FD       P  + VL  +  
Sbjct: 79  KTVKNDVEKSGASSLGVDVTEMPDGTLRVNI---PSNVSFDTGKYALKPALLPVLDSVAR 135

Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            L    E      G+TD++     A+ N  LS++RA +    L   GV    ++   G  
Sbjct: 136 ALVQHPELRAKSIGYTDST---GSAQVNQTLSVNRARAVANYLSDKGVPVGNLTA-EGRG 191

Query: 317 HHRLK--IASDPMNSANRRIDILV 338
                   A+    + NRR+++ +
Sbjct: 192 PSNPVGDNATAEGRAMNRRVELYL 215


>gi|221134115|ref|ZP_03560420.1| putative outer membrane adhesin like proteiin [Glaciecola sp.
            HTCC2999]
          Length = 2282

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 236  MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +F  +SS       + + K+   +    +  + I GHTDA        + W LS  RA  
Sbjct: 2170 LFAINSSQLTSNDKLEVMKLATFMQTYPDTSVVIEGHTDAR--GTDKYNQW-LSQQRAAV 2226

Query: 295  AYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRR----IDIL--VEDRQ 342
              ++L+ +  ++ +RI  I GF   +L I +      + NRR    I I+  VE ++
Sbjct: 2227 VGKLLINQHNIAPERIETI-GFGETQLLIDATTEAQHALNRRTIAEITIIKNVEKKK 2282


>gi|83591777|ref|YP_425529.1| OmpA family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574691|gb|ABC21242.1| OmpA family protein [Rhodospirillum rubrum ATCC 11170]
          Length = 340

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S+   PE   ++         +    I + GH D          N  LS  RA +
Sbjct: 238 FFDFDSTSITPEAGGIINTAATNAKSTGSSTIEVTGHADR---SGGDAYNLALSKRRAEA 294

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
               L ++G+S  +I  +         + +        NRR+ ++++
Sbjct: 295 VVGELERNGISRSQI-AVYAKGEADPLVPTPDGVREPQNRRVVVVLK 340


>gi|88800697|ref|ZP_01116256.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Reinekea sp. MED297]
 gi|88776561|gb|EAR07777.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Reinekea sp. MED297]
          Length = 294

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD             L  I   L     +  I + GH+D+        DN RLS  RAY 
Sbjct: 173 FDGGGDGLDARARSQLDDIVTYLKADPLITAIYVDGHSDSV---GTRYDNRRLSERRAYR 229

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
               L+ +G+    I             +++     + NRR+ +
Sbjct: 230 VTDYLVNAGIDAAMIL-TRYHGERYPIASNETAAGRAQNRRVTL 272


>gi|159045040|ref|YP_001533834.1| hypothetical protein Dshi_2499 [Dinoroseobacter shibae DFL 12]
 gi|157912800|gb|ABV94233.1| hypothetical protein Dshi_2499 [Dinoroseobacter shibae DFL 12]
          Length = 240

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283
           I+      T +FD  S+    E    ++ I E L  +   +   + G+TDA         
Sbjct: 32  IAQAQDLGTVLFDFDSASLDAEAATQVRAIAEALEATPSYKPTIVVGYTDAV---GSTGY 88

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           N  L   RA +    L   GV   RI  I+      L +A       NRR+++ ++D
Sbjct: 89  NLALGQRRAQTVADALTAQGVPVSRIGSIASRGESDLVVAVATAERRNRRVNVALDD 145


>gi|150024643|ref|YP_001295469.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771184|emb|CAL42651.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 284

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  ++     ++   L ++  V+    E +ISI GH               LS  RA + 
Sbjct: 181 FITNTFAVTNDSRGKLYELLLVMQQRPEMIISIHGHLCCVSVDRK-----DLSTQRAKAV 235

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDI-LVED 340
            Q L  +G+ + R+    GF            ++   +ANRR++I ++E+
Sbjct: 236 KQFLELNGIEKTRMD-FKGFGSSIPLFPLPENTEEERAANRRVEIEVIEN 284


>gi|330502404|ref|YP_004379273.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916690|gb|AEB57521.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 217

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            LP ++  + ++ ++L       + + GH D+      A  N  LS  RA +   +   S
Sbjct: 85  LLPASLGPITRVAKLLETDEDIAVVVLGHADS---SGDAALNRDLSQQRARAVTSIFRLS 141

Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           G+ + R+ ++ G      + A+D     + NRR++IL+  R
Sbjct: 142 GLKQSRL-QVMGLGSDMPRAANDSAAGRALNRRVEILLTSR 181


>gi|260773875|ref|ZP_05882790.1| protein F-related protein [Vibrio metschnikovii CIP 69.14]
 gi|260610836|gb|EEX36040.1| protein F-related protein [Vibrio metschnikovii CIP 69.14]
          Length = 208

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S++    ++  L ++G  LA++ +  I I GHTD +      R N  LS+ RA + 
Sbjct: 103 FQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNT---GTERFNDGLSMRRADTV 159

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL-VEDRQ 342
             +L++  VS   I    G+  H     +      + NRR+++L + D Q
Sbjct: 160 KNILLEQQVSLAAIY-TRGYGEHTPACTNQTSQGRACNRRVELLMIMDSQ 208


>gi|77457455|ref|YP_346960.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77381458|gb|ABA72971.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 364

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+   +   +       E         + +K       +        K++ M   K 
Sbjct: 72  PFGSDDSAAAKPEVKAEAKPEAKPVEVAKAEADKGGKWWWPFGGKEQDTAKVVPMPDPKV 131

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS-SIPLPETIV 250
            Q         L   + D+ ++    E       + ++       F+    ++ LP T+ 
Sbjct: 132 TQAWLDDYEPRLRTAIKDSNLQLERREN------VLVVTAPVEGSFNPDRPAMLLPVTLG 185

Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
              ++ ++L    +  + + GH+D +     A  N +LS +RA +   +   SG+  DR+
Sbjct: 186 PFTRVAKILEADPKTAVLVLGHSDTT---GAAPANVKLSQERAQAVAAIFRLSGLQRDRL 242

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
             + G      + A+D     + NRR+++LV  +
Sbjct: 243 M-LRGMGSEAPRAANDSVEGRALNRRVELLVTPQ 275


>gi|322417875|ref|YP_004197098.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18]
 gi|320124262|gb|ADW11822.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18]
          Length = 198

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      FD  S +        L      L       I + G+ D    R     N  LS
Sbjct: 89  DALEKIYFDFDSDLLSDAARKTLTDNFVKLKAMPNVKIRVEGNCDE---RGSDEYNLALS 145

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
             RA +A + L   GV   R+S I G+   +   +  SD   + NRR
Sbjct: 146 ERRAQAAVKYLTALGVPASRLSAI-GYGEEKPADSGHSDDAWARNRR 191


>gi|49476137|ref|YP_034178.1| peptidoglycan-associated lipoprotein [Bartonella henselae str.
           Houston-1]
 gi|49238945|emb|CAF28242.1| Peptidoglycan-associated lipoprotein [Bartonella henselae str.
           Houston-1]
          Length = 174

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS   P+   +L +  E L       I I GH D    R     N  L   R
Sbjct: 64  DRVFFSLDSSSIEPDAEAILMRQAEWLLRYPFYSIVIEGHADE---RGTREYNLALGQRR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GVS  RI  IS +   R     D ++  + NRR
Sbjct: 121 AVAVRNYLISLGVSAQRIQTIS-YGKERPVAVCDDISCWNQNRR 163


>gi|295690756|ref|YP_003594449.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295432659|gb|ADG11831.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 189

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNW 285
           ++   ++  F  +++   PE    L +  E L    + +   I+GHTD          N 
Sbjct: 77  LVLSDDSVKFPVNAATLSPEAEQRLSEFTEKLKADNKNVYLEIQGHTDN---SGSKEYND 133

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
            L   RA +  + L + GV+ +R++ IS +        ++     + NRR+ ++V  
Sbjct: 134 ELGEKRAETVRKFLSQHGVALNRMATIS-YGQEAPVAPNETREGRAQNRRVVVMVLS 189


>gi|269102192|ref|ZP_06154889.1| sodium-type flagellar protein MotY precursor [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162090|gb|EEZ40586.1| sodium-type flagellar protein MotY precursor [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 297

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D  S      +   L +I + +  + +V  + +  +TD+        +N  LS  RA  
Sbjct: 192 YDNDSEELNELSRKRLMQIADFVRAAKDVDLVLVATYTDSF---GTKNENQDLSERRANK 248

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            ++  +  G+  DRI K+  F   R    ++     + NRR+ I +
Sbjct: 249 LHEYFISLGLPPDRI-KVQAFGERREIADNNTPIGRNLNRRVVISL 293


>gi|269968606|ref|ZP_06182608.1| hypothetical protein VMC_40380 [Vibrio alginolyticus 40B]
 gi|269826817|gb|EEZ81149.1| hypothetical protein VMC_40380 [Vibrio alginolyticus 40B]
          Length = 288

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-----SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +   LS             E  R+ + I     ++++  N   F   S+   P+ +  L 
Sbjct: 129 LDYVLSQTTCTPPDD---IEALRSDLNIVSDIYALLNIDNQ--FAVDSAEINPKYMGHLA 183

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-- 310
           +   +L       + + GH DA+        N +L+  RA    + L   G++ +R++  
Sbjct: 184 EAAYILRDHPNLSLVVTGHADAT---GTPDYNQKLAQARAEQVKRYLTVFGITSERVTTK 240

Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338
            +     +      +       NRR+ I V
Sbjct: 241 SV---GDNLPLYEGETPAVRLTNRRVSIEV 267


>gi|261210344|ref|ZP_05924639.1| outer membrane protein A precursor [Vibrio sp. RC341]
 gi|260840571|gb|EEX67132.1| outer membrane protein A precursor [Vibrio sp. RC341]
          Length = 293

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L  +     + +V    V   +         +   +     +F  +SS     +  +   
Sbjct: 152 LTYRFGQPETPMVIREEVPVEVIREVEVAQDVVRQEFVGEKLFAFNSSELKA-SSSLDMM 210

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +  ++A+ +  +++ GH+D+         N  LS  RA +  +  + +G+   RI+ + G
Sbjct: 211 MDALMANESLSLTLEGHSDSV---GSEEYNQALSERRAQAVAEYFILNGIDASRIT-VMG 266

Query: 315 FAHHRLKIASDP--MNSANRRIDIL 337
                   ++D     + NRR+ + 
Sbjct: 267 KGSQEPVASNDSDIGRAQNRRVVLF 291


>gi|58039713|ref|YP_191677.1| Outer membrane protein [Gluconobacter oxydans 621H]
 gi|58002127|gb|AAW61021.1| Outer membrane protein [Gluconobacter oxydans 621H]
          Length = 370

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD---ASPFRNIARDNWRLSLDR 291
            FD  S+        V+              I + G+TD   A P       N  LS  R
Sbjct: 262 FFDWDSAELSTRAKAVVAAAARNSTSVQVTHIEVSGYTDTSAAHPGHRGEAYNMALSQRR 321

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
           A +  + L++ GV+   I+   GF      +  A++     NRR++I
Sbjct: 322 ANTVKEELVRDGVAAGLIT-TQGFGESHPLVVTAANTREPQNRRVEI 367


>gi|99078059|ref|YP_611317.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99035197|gb|ABF62055.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 653

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           I + +   F+  S+    ++  V+ KI ++L    E  + I+GHTD+         N  L
Sbjct: 491 IQRADKIAFEPGSATVAADSARVIDKIAKLLQQCGEIPLEIQGHTDSQ---GREEMNQNL 547

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           S  RA S    L    +         G+       ++D      ANRRI+
Sbjct: 548 SQARAQSVLNALRARRILTGSFVA-RGYGEDNPIASNDTEEGREANRRIE 596


>gi|329114380|ref|ZP_08243142.1| Outer membrane protein [Acetobacter pomorum DM001]
 gi|326696456|gb|EGE48135.1| Outer membrane protein [Acetobacter pomorum DM001]
          Length = 452

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD----NWRLSLD 290
            FD   S        ++    +  AH     I++ G+TD S      +     N RLSL 
Sbjct: 343 FFDWDKSDLTDRARSIVGVAAQAAAHVALTRITVSGYTDNSSAHPGQKAGEEYNMRLSLR 402

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           RA      LM+ GV    I  I G+      + + P    + NRR++I+
Sbjct: 403 RAEVVKAELMRDGVPGTTID-IHGYGETHPLVTTGPNTKEAQNRRVEII 450


>gi|258541844|ref|YP_003187277.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01]
 gi|256632922|dbj|BAH98897.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01]
 gi|256635979|dbj|BAI01948.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-03]
 gi|256639034|dbj|BAI04996.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-07]
 gi|256642088|dbj|BAI08043.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-22]
 gi|256645143|dbj|BAI11091.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-26]
 gi|256648198|dbj|BAI14139.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-32]
 gi|256651251|dbj|BAI17185.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654242|dbj|BAI20169.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-12]
          Length = 411

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD----NWRLSLD 290
            FD   S        ++    +  AH     I++ G+TD S      +     N RLSL 
Sbjct: 302 FFDWDKSDLTDRARSIVGVAAQAAAHVALTRITVSGYTDNSSAHPGQKAGEEYNMRLSLR 361

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           RA      LM+ GV    I  I G+      + + P    + NRR++I+
Sbjct: 362 RAEVVKAELMRDGVPGTTID-IHGYGETHPLVTTGPNTKEAQNRRVEII 409


>gi|326799502|ref|YP_004317321.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326550266|gb|ADZ78651.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 647

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +  V+L  + +++  +    I +  HTD+   R   + N  LS  RA +A   L+  
Sbjct: 546 IRKDAAVILDGLVKIMKDNPTLKIELSSHTDS---RGRDKYNMTLSQKRAQAAVDYLVSR 602

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++ DR+    G+   +L          S+  +  NRR +  V +
Sbjct: 603 GIARDRMIA-KGYGESKLLNRCANGIKCSEAEHQLNRRTEFTVLE 646


>gi|332161206|ref|YP_004297783.1| hypothetical protein YE105_C1584 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665436|gb|ADZ42080.1| hypothetical protein YE105_C1584 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 558

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286
            +  PMFD +S    P      + +  +L     H    + I GH+D +     A  N  
Sbjct: 439 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 494

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
           +S  RA      L+K+         I G        ++D       NRR+++L+  
Sbjct: 495 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 550


>gi|318605099|emb|CBY26597.1| putative OMPA family outer membrane porin precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 556

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286
            +  PMFD +S    P      + +  +L     H    + I GH+D +     A  N  
Sbjct: 437 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 492

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
           +S  RA      L+K+         I G        ++D       NRR+++L+  
Sbjct: 493 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 548


>gi|123442919|ref|YP_001006894.1| hypothetical protein YE2703 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089880|emb|CAL12736.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 556

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286
            +  PMFD +S    P      + +  +L     H    + I GH+D +     A  N  
Sbjct: 437 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 492

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
           +S  RA      L+K+         I G        ++D       NRR+++L+  
Sbjct: 493 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 548


>gi|330861523|emb|CBX71733.1| putative lipoprotein yfiB [Yersinia enterocolitica W22703]
          Length = 169

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            ++   F+ T  G +  +    N  +FD          +  +Q IG  L +     + + 
Sbjct: 43  ALQEQGFKLTDNGWVFGLT---NKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           G+TDA         N +LS  RA +    L   G+    I  + G         +     
Sbjct: 100 GYTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRANIE-VRGRGKLEPVADNRTAKG 155

Query: 328 NSANRRIDILV 338
            + NRR+ I+V
Sbjct: 156 RAENRRVAIIV 166


>gi|257453916|ref|ZP_05619193.1| inner membrane lipoprotein YiaD [Enhydrobacter aerosaccus SK60]
 gi|257448688|gb|EEV23654.1| inner membrane lipoprotein YiaD [Enhydrobacter aerosaccus SK60]
          Length = 216

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +    + L A+    GV          I++        F    S  LP     L K+   
Sbjct: 77  MQQQEAKLRAETAGSGVTVTRDPVTNNINLS-IPEAITFRVGDSTILPNFYNTLDKVATT 135

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L    +  I + G+         A  N  LS  RA +    L+  G+S +RIS I   A 
Sbjct: 136 LRDYNQTNIQVNGYAS---VEGDANRNQALSQRRASAVANYLVNRGISGNRISAIGRGAT 192

Query: 318 HRLKIASDPMNSANRRIDILVEDRQ 342
            +   + +P    NRR+++++   Q
Sbjct: 193 TQFGSSYEP----NRRVEMIILAPQ 213


>gi|89890715|ref|ZP_01202224.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89516860|gb|EAS19518.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 368

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
              SS         +  K+  VL ++    + +  HTD+   R     N  LS  RA S 
Sbjct: 260 ATGSSTLTAADKAEIDAKLLSVLNNTPGSKVEVASHTDS---RGSKTSNQALSERRAQSV 316

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333
              L+  G++  RI   +G+  +RLK         ++  + ANRR
Sbjct: 317 ANYLISKGINNSRIVA-NGYGENRLKNRCADGVSCTEREHKANRR 360


>gi|167623118|ref|YP_001673412.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353140|gb|ABZ75753.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +  L      L+ I   L  +   + + GHTD+    + A  N +LS +RA    
Sbjct: 96  FEFARADVLLSQAQTLEVIARWLKSTGGDLLLVGHTDS--VGSPAY-NLQLSFERAEQVK 152

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            VL++  G+   R  ++ G         +        NRR++ LV
Sbjct: 153 NVLVEQFGLLASRF-QVVGVGSAEPIADNRTRQGREQNRRVEFLV 196


>gi|319951894|ref|YP_004163161.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319420554|gb|ADV47663.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 647

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +  ++++K+   L       I I  HTDA    N A ++ RLS  RA + 
Sbjct: 540 FDFDQSYIRKDAQIIMEKVIAYLNQYPNTKIRIGSHTDA--IANDAYNS-RLSERRAKAT 596

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-------KIASDPMNSANRRIDILV 338
           Y+ L+K G++  R++   GF   +L          S   +  NRR + +V
Sbjct: 597 YEYLVKKGIAASRLT-FKGFGETQLNNECKNTVNCSAEKHQLNRRSEFIV 645


>gi|189461399|ref|ZP_03010184.1| hypothetical protein BACCOP_02054 [Bacteroides coprocola DSM 17136]
 gi|189431928|gb|EDV00913.1| hypothetical protein BACCOP_02054 [Bacteroides coprocola DSM 17136]
          Length = 239

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 266 ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           ++I G+TD + ++N   +     N  LS  RA S    L+  GVS  +I  + G      
Sbjct: 144 VAIYGYTDNTGWKNSTAEQSVQKNQELSQARAQSVSSYLLGCGVSASQIKTVEGMGESNP 203

Query: 321 KIASDPMNSA--NRRIDI 336
              +        NRR+++
Sbjct: 204 VADNSTEAGRKENRRVEV 221


>gi|225012476|ref|ZP_03702912.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003453|gb|EEG41427.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 322

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I   +N  +F  SSS+        L+K+  +L       I I GHT        A  N +
Sbjct: 211 IKSNQNKILFKASSSVLDKGGRATLEKVKMLLNTYQNTAIIIEGHTSTD---GSASYNQK 267

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS  RA +    L+   +   RIS I G+  ++    +      + +RR  I +
Sbjct: 268 LSEQRASAIKDYLISQTIDASRISTI-GYGENQPIGDNKTVKGRAESRRAKIKI 320


>gi|317152528|ref|YP_004120576.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942779|gb|ADU61830.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 352

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E I VL++   +L  +      I GHTD++        N  LS  RA S 
Sbjct: 251 FGFDKYQITDEMIPVLEQAKIILDENPSASYIIAGHTDST---GPDAYNQGLSERRAGSV 307

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            + ++ +GV+  R+    G+     K  +        NRR++I
Sbjct: 308 REWMVANGVNTSRLES-KGYGELSPKYDNATSEGRKLNRRVEI 349


>gi|257460460|ref|ZP_05625561.1| putative chemotaxis protein MotB [Campylobacter gracilis RM3268]
 gi|257441791|gb|EEV16933.1| putative chemotaxis protein MotB [Campylobacter gracilis RM3268]
          Length = 340

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 122/337 (36%), Gaps = 50/337 (14%)

Query: 33  WKIVYADFMTVLMAFFLVM--------WIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
           W I YAD M  L+  F+++        ++  +   + +  I             +++   
Sbjct: 12  W-IAYADLMAGLLFVFVLLVGGIIVKYFLTQSNLQEKESQISSALASLQSQEKKSAE--L 68

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           +  N        K+++   +   +NS+         +   +  + N+   S  Q++    
Sbjct: 69  EALNKIFSDQLEKLNIENTDLRKQNSIYFIQIEDLTEMAEKLKKENLDINSLLQKAREDA 128

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           N+    +E      K   L   + K+E+ F   L    +   + +  L  +  KI + L 
Sbjct: 129 NATISQNE-----LKIAFLLDQLTKKESDFNKILQDLNVTKNRIRN-LTGMKVKIIADL- 181

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-----IGEVL 259
               + +   +  +     + +S     ++ +FDK SS         L+         +L
Sbjct: 182 ---KEKLGGKIRIDNESGAMTLS-----SSILFDKGSSELKEGAKETLRSTLQSYFAALL 233

Query: 260 AHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK--- 311
            +         I I GHTD+         N  LS +RA++     + S   ++R+ K   
Sbjct: 234 NNDEIRENLDQIIIEGHTDS---DGGYLYNLELSQNRAFAVMD-FINSWNKDERLQKYLI 289

Query: 312 ISGFAHHRLKIA---SDPMNSANRRIDI--LVEDRQG 343
            SG ++ +  +     D   S  RRI+I   + +++ 
Sbjct: 290 ASGRSYTQPVMRRGVEDKDAS--RRIEIKFTLSNKEA 324


>gi|86139070|ref|ZP_01057641.1| OmpA domain protein [Roseobacter sp. MED193]
 gi|85824301|gb|EAQ44505.1| OmpA domain protein [Roseobacter sp. MED193]
          Length = 640

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     + VVL  I  +L       + I+GHTD+         N  LS  RA S 
Sbjct: 500 FEPGSATVAGGSSVVLDHIASILEKCGPIRLEIQGHTDSQ---GREGMNQALSQSRAQSI 556

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
              L    +       I G+   +   ++D      ANRRI+
Sbjct: 557 LNELRARRIRTSAFIAI-GYGESQPIASNDSEEGREANRRIE 597


>gi|288818260|ref|YP_003432608.1| hypothetical protein HTH_0948 [Hydrogenobacter thermophilus TK-6]
 gi|288787660|dbj|BAI69407.1| hypothetical protein HTH_0948 [Hydrogenobacter thermophilus TK-6]
 gi|308751857|gb|ADO45340.1| OmpA/MotB domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 334

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E I +L ++ + L  +    + I G+TD       A ++ +L++ RA + 
Sbjct: 228 FDFDKYSIKREYIPLLNEVVKTLKENPNVRVRIEGYTDN--IGTKAYND-KLAMKRAKAV 284

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
              L+K G+ E RI  + GF   R   +++       NRR D ++  
Sbjct: 285 KDYLVKHGIEESRIDTV-GFGKERYIASNETAIGRFTNRRADFIILR 330


>gi|73541910|ref|YP_296430.1| OmpA/MotB [Ralstonia eutropha JMP134]
 gi|72119323|gb|AAZ61586.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 186

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F        P+ I  ++++G VL     + + + GHTD +        N RLSL RA
Sbjct: 80  KVLFGFDEDAIPPDRIADIRRLGGVLLGVGIDHVRVDGHTDHT---GSTEYNLRLSLRRA 136

Query: 293 YSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
            +  +VL+ +G     I  +  G         +    + NRR  I+V
Sbjct: 137 EAVARVLVTAGFEPANIELRGMGKGRPVADNRTAAGRAENRRASIVV 183


>gi|257454195|ref|ZP_05619465.1| outer membrane protein, OmpA/MotB family [Enhydrobacter aerosaccus
           SK60]
 gi|257448368|gb|EEV23341.1| outer membrane protein, OmpA/MotB family [Enhydrobacter aerosaccus
           SK60]
          Length = 172

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             NT  F   SS    +   VL +  + L  +    ++I GHTD    R     N  L  
Sbjct: 66  NPNTVYFGFDSSEIDAQGQAVLNQQAQFLQANPSARVAIAGHTDE---RGSREYNLALGE 122

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            RA +A   L  SGVS  R+  IS +   +        +  + NRR +I
Sbjct: 123 RRAQAAQAYLATSGVSASRMEAIS-YGEDQPADPGHDESAWAKNRRAEI 170


>gi|300024878|ref|YP_003757489.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526699|gb|ADJ25168.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 387

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++ S+   P +   L  +   L   +  V+ +RG TD+      +  N  LS  RA   
Sbjct: 284 FNEDSAAIAPASRTALSALVTALKACAGVVVEVRGFTDSV---GSSEGNQMLSELRAKKI 340

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              L K+GV   +++ + G         ++       NRR++ ++
Sbjct: 341 VDFLTKAGVEASKLTAV-GKGEDDPVADNETPEGRRLNRRVEFVL 384


>gi|149371350|ref|ZP_01890836.1| OmpA/MotB [unidentified eubacterium SCB49]
 gi|149355488|gb|EDM44047.1| OmpA/MotB [unidentified eubacterium SCB49]
          Length = 247

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L KI   L +  ++ + I GHTD+         N  LSL RA +  +  +   +   RI 
Sbjct: 161 LDKIVSYLKNDPQITVKITGHTDSI---GSDNFNKSLSLKRANAVKRYFLSKKIDTRRII 217

Query: 311 KISGFAHHRLKIASDPMNSANRRIDI 336
            I+G      K     + S NRR++I
Sbjct: 218 -INGMGEKSPKSK---LASQNRRVEI 239


>gi|86139145|ref|ZP_01057715.1| peptidoglycan-associated lipoprotein [Roseobacter sp. MED193]
 gi|85823989|gb|EAQ44194.1| peptidoglycan-associated lipoprotein [Roseobacter sp. MED193]
          Length = 166

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   P    +LQ     L  + +  ++I+GH D    R     N  L   R
Sbjct: 56  DRVLFLVDQSTLNPAAETILQGQARWLTANPDYTVTIQGHADEQGTRIY---NLALGERR 112

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A SA + L+  G+S  RI ++  +   R     +++   + NRR
Sbjct: 113 ANSAREYLISQGISSSRI-QVVSYGKERPLEICSAESCYAKNRR 155


>gi|83943919|ref|ZP_00956376.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. EE-36]
 gi|83954492|ref|ZP_00963203.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. NAS-14.1]
 gi|83840776|gb|EAP79947.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. NAS-14.1]
 gi|83845166|gb|EAP83046.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. EE-36]
          Length = 174

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE    L      L  ++     I GH D          N  L   R
Sbjct: 64  DRVLFLVDQSNLTPEGQATLDGQAAWLNTNTDYQAVIEGHADEQ---GTREYNLALGARR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  G++  R+ ++  +   R     +S+   + NRR
Sbjct: 121 ANAAREYLISRGIAASRL-RVVSYGKERPIEVCSSEACYAKNRR 163


>gi|301328313|ref|ZP_07221421.1| OmpA family protein [Escherichia coli MS 78-1]
 gi|300845245|gb|EFK73005.1| OmpA family protein [Escherichia coli MS 78-1]
          Length = 188

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +      + ++G     TR+G  I I++  N   FD SS+   P     L  +  VL   
Sbjct: 83  VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +  +++ G+TD++   ++   N RLS  RA S    L   GV   RI
Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALTPQGVDASRI 186


>gi|114771185|ref|ZP_01448605.1| OmpA/MotB family protein [alpha proteobacterium HTCC2255]
 gi|114548110|gb|EAU50997.1| OmpA/MotB family protein [alpha proteobacterium HTCC2255]
          Length = 163

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +T +F    S    E   +L K  E L ++    I+I GH D +        N  L   R
Sbjct: 53  DTVLFLVDQSSLTAEATDLLNKQAEWLLNNPNKSITIEGHADET---GTREYNLALGARR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A S    L+  G+++ RI+ ++ F   R     + +   S NRR
Sbjct: 110 AASVQNYLVSRGLTDSRINTVT-FGKERPLAICSDEACWSKNRR 152


>gi|325067556|ref|ZP_08126229.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 336

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     +   VL  + E +        ++I GH D          N  LS  RA +
Sbjct: 50  FATDSDQLSAQADSVLATVVEQIKKYPSGGELTITGHIDDVA---DDAHNQDLSERRAKA 106

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             + L K          +SG      ++A+D       NRR++I +   +
Sbjct: 107 VSERLKKLTDLSAWKESVSGKGESSPRVANDTDEHRQINRRVEITLTPSK 156


>gi|308050039|ref|YP_003913605.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632229|gb|ADN76531.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 296

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 241 SSIPLPETIVV--LQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           S   LP T  +  L  I   +A       + + GHTD          N  LS DRA    
Sbjct: 183 SGQLLPNTAQLNQLSDIAAYVAADPRITEVLVDGHTDNV---GDHLANLALSRDRADEVG 239

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
            +L + G+S DRI ++ G       ++++       NRR+ I LV D Q
Sbjct: 240 ALLHERGISRDRI-QVRGHGERYPLLSNNNAQGRQHNRRVTIRLVRDGQ 287


>gi|121725841|ref|ZP_01679141.1| OmpA family protein [Vibrio cholerae V52]
 gi|147672308|ref|YP_001215442.1| OmpA family protein [Vibrio cholerae O395]
 gi|121631606|gb|EAX63974.1| OmpA family protein [Vibrio cholerae V52]
 gi|146314691|gb|ABQ19231.1| OmpA family protein [Vibrio cholerae O395]
 gi|227015278|gb|ACP11487.1| protein F-related protein [Vibrio cholerae O395]
          Length = 207

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + ++ S++   L    +  G+  E         +I   NT  F+  S+     +   L  
Sbjct: 62  MTQQRSASYEDLRQYLLSNGIQHEVVPGDY--PMIKLNNTVRFETGSAKVSMASKQWLDT 119

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   LA  +   I + GHTD +      + N +L+  RA +    L++S V+++ I    
Sbjct: 120 VARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAVKAALVQSRVAQNAIY-TR 175

Query: 314 GFAHHRLKIASDPMNSA--NRRIDI 336
           GF  +     +   N    NRR++I
Sbjct: 176 GFGENVPACTNSTKNGRACNRRVEI 200


>gi|262168510|ref|ZP_06036206.1| protein F-related protein [Vibrio cholerae RC27]
 gi|262023039|gb|EEY41744.1| protein F-related protein [Vibrio cholerae RC27]
          Length = 204

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           + ++ S++   L    +  G+  E         +I   NT  F+  S+     +   L  
Sbjct: 59  MTQQRSASYEDLRQYLLSNGIQHEVVPGDY--PMIKLNNTVRFETGSAKVSMASKQWLDT 116

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   LA  +   I + GHTD +      + N +L+  RA +    L++S V+++ I    
Sbjct: 117 VARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAVKAALVQSRVAQNAIY-TR 172

Query: 314 GFAHHRLKIASDPMNSA--NRRIDI 336
           GF  +     +   N    NRR++I
Sbjct: 173 GFGENVPACTNSTKNGRACNRRVEI 197


>gi|319953635|ref|YP_004164902.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319422295|gb|ADV49404.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 642

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 9/220 (4%)

Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159
            S +    K + D+      +K   + +      ++ +      + S+T   E G  L +
Sbjct: 395 FSSNREGGKGNDDIYGFKVAEKPGLKTIVIKGIVVNPANDKGIEEASITLFDENGNILKQ 454

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFE 218
           S        + E  F    + +       +   + L ++ +  ++  +   +     + E
Sbjct: 455 SISGVDGDYQFEIPFRKEYAVKAFKKGHGRFYQEFLQEQGAKAVTQNLKIGLPFIQDVVE 514

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
              +  +I +        F K  S   P     L K+  V+ +  E  + +  HT++   
Sbjct: 515 EKESKTVIKLQ----KFYFSKGKSTITPAIAAELDKVAAVVVNFPEIQLKVESHTNS--- 567

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           R     N  LS DRA +  + L+  GVS + + +  G+  
Sbjct: 568 RGSGASNLSLSQDRASAVRKYLLSKGVSSENVVEYIGYGE 607


>gi|149191161|ref|ZP_01869419.1| hypothetical protein VSAK1_02239 [Vibrio shilonii AK1]
 gi|148834999|gb|EDL51978.1| hypothetical protein VSAK1_02239 [Vibrio shilonii AK1]
          Length = 305

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   +          +  I  ++        I I G+TD       +  N ++S  R   
Sbjct: 201 FQSGAVALTELQKRTIGDISSLVKRDPKIVKILIDGYTDN---SGDSVANLQISKQRGSD 257

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
             Q  +++GVS  ++ +I G      K    ++     NRR++I +  +
Sbjct: 258 VAQWFVENGVS-KKMIEIRGHGDRYPKYDNTTEEGRDKNRRVEIRLVRK 305


>gi|85705019|ref|ZP_01036119.1| OmpA domain protein [Roseovarius sp. 217]
 gi|85670341|gb|EAQ25202.1| OmpA domain protein [Roseovarius sp. 217]
          Length = 311

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     L+ +   L       +++ GHTD++        N  LS  RA + 
Sbjct: 204 FGSGDNALGPGPHPSLEALAAYLLTKPNTRVALVGHTDST---GGLEGNIALSRSRAEAV 260

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             VL +  GV   ++    G  +      +   +    NRR++ ++ D
Sbjct: 261 LSVLTEIHGVPATQLEA-HGIGYLAPLAPNTTGDGRESNRRVEAVLLD 307


>gi|297579202|ref|ZP_06941130.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536796|gb|EFH75629.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 212

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q+   +F   SS   P  +  ++++ E L       I ++G+         A  N  LS 
Sbjct: 87  QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            R+ +    L++ GV+ +R++ I G+    L+     D  ++ NRR+
Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEAEGTDDVSHARNRRV 189


>gi|115522932|ref|YP_779843.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115516879|gb|ABJ04863.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 219

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+    + +  +  +G+ L++         + GHTDA         N  LS  RA 
Sbjct: 110 FDYNSANISAKALKAVDALGKALSNPDLKGSTFVVAGHTDAV---GSEPYNQDLSERRAD 166

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L+   G++   +  + G+   +LK AS P    NRR+ ++
Sbjct: 167 AIKRYLVDKFGIAGTDLVTV-GYGESKLKDASAPTAGVNRRVQVV 210


>gi|325267033|ref|ZP_08133703.1| OmpA family protein [Kingella denitrificans ATCC 33394]
 gi|324981533|gb|EGC17175.1| OmpA family protein [Kingella denitrificans ATCC 33394]
          Length = 240

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283
               +   +  +F        PE I  L ++   L  S      + GHTD   F    + 
Sbjct: 99  RTETVSLNSNFLFGFDKDTLRPEAIETLNQLAARLGDSNVQSARVEGHTD---FMGSEQY 155

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRID 335
           N  LS  RA      L++ GV   +IS  +G    + ++ +      N   RR+ 
Sbjct: 156 NQALSERRATRVANYLVERGVPASKISA-AGLGESQARMTASCQAEVNKLGRRVS 209


>gi|257057431|ref|YP_003135263.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Saccharomonospora viridis DSM 43017]
 gi|256587303|gb|ACU98436.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Saccharomonospora viridis DSM 43017]
          Length = 223

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         ++ + ++L  +       I GH    P         +LS +RA +
Sbjct: 122 FAADSANLDAAGRQAVKNVADLLTEAPTDWRFEIAGHVARVPGAEPE-SARKLSYERAEA 180

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             + L+KSG+S DR+  + G+   R   +    +S +RR++I V
Sbjct: 181 VAEELVKSGLSPDRVEPV-GYGATRPL-SDSGTSSIDRRVEITV 222


>gi|86142769|ref|ZP_01061208.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
 gi|85830801|gb|EAQ49259.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
          Length = 622

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 92/314 (29%), Gaps = 32/314 (10%)

Query: 54  INATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113
           +N+   +    I +  N +  +      G  D  +   +        ++   I  N+ D 
Sbjct: 312 VNSDKLEQFPYISENGNLYFASNRAEGLGGLDLYSSDPQGDSFAEAYNLGSSINSNADDF 371

Query: 114 KIGSTNQKKQYQRLENNIFYLS--NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
            +    ++       N        + +   +    +  + +  K L      E ++ +  
Sbjct: 372 ALIIKERQGSGFMSSNRTGKDKIYSFETFPNLNYQIIGNVDDKKTLEPLPGAEVTLYRPS 431

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKK---------ISSTLSGLVADNIVKGVLFETTRT 222
                    E   + K + R   L K          +   +    A N    +  + +  
Sbjct: 432 TGTTQKTITEADGSFKFEVRPNSLYKVKATKALYAPVEKEVKIEYAQNTKTLIKLQMSAY 491

Query: 223 GILISIIDQRNT----------PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
                I+   +             FD   +   P+    L K+  ++    E  + +  H
Sbjct: 492 ADTEDIVAVNDRNQLTQVKLEKIYFDFDKANIRPDAATTLDKLVALMKKYPEMNVEVASH 551

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SD 325
           TD    R     N +LS  RA S    ++  G+   R+    G+       A      ++
Sbjct: 552 TDQ---RGPEDYNLQLSQRRAQSTVDYIVSKGIDRSRLKA-QGYGEQDPINACPSGDCTE 607

Query: 326 PMNSANRRIDILVE 339
                NRR +  + 
Sbjct: 608 EQFDENRRSEFTIL 621


>gi|86739073|ref|YP_479473.1| OmpA/MotB [Frankia sp. CcI3]
 gi|86565935|gb|ABD09744.1| OmpA/MotB [Frankia sp. CcI3]
          Length = 187

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD +SS    E +  L +I   +      I++ G++D         DN RLS DRA + 
Sbjct: 90  LFDSNSSELRREAVTALGQILPSIREHPGHIAVIGYSDGL---GRTEDNLRLSQDRAKAV 146

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              L   G+    + ++ G             +++ RR++I++
Sbjct: 147 ESWLATQGIPGS-VLEVEGKGE--EGAQDGVADASRRRVEIVL 186


>gi|89071216|ref|ZP_01158402.1| OmpA family protein [Oceanicola granulosus HTCC2516]
 gi|89043258|gb|EAR49486.1| OmpA family protein [Oceanicola granulosus HTCC2516]
          Length = 107

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  + T   +++++       +FD  S+         L  +   L +     I++ GHTD
Sbjct: 1   MRIDNTGDSLVVTL---PQDILFDTDSATLSGSLQSDLNALARSLNNYPSTTITVIGHTD 57

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +     A  N  LS  RA +    L+ SGVS  RI+ + G         +
Sbjct: 58  NT---GEASYNQNLSRRRAQAVTSTLISSGVSAGRINTV-GRGEDAPIATN 104


>gi|332160220|ref|YP_004296797.1| putative lipoprotein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607214|emb|CBY28712.1| integral membrane protein YfiB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664450|gb|ADZ41094.1| putative lipoprotein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 169

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
            ++   F+ T  G +       N  +FD          +  +Q IG  L +     + + 
Sbjct: 43  ALQEQGFKLTDNGWV---FGLANKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           G+TDA         N +LS  RA +    L   G+    I  + G         +     
Sbjct: 100 GYTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRANIE-VRGRGKLEPVADNRTAKG 155

Query: 328 NSANRRIDILV 338
            + NRR+ I+V
Sbjct: 156 RAENRRVAIIV 166


>gi|301064490|ref|ZP_07204897.1| OmpA family protein [delta proteobacterium NaphS2]
 gi|300441407|gb|EFK05765.1| OmpA family protein [delta proteobacterium NaphS2]
          Length = 275

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +   PE    L +   V   +    + ++G+TD        + N  LSL R
Sbjct: 176 GDVLFDFDKANIKPEFYGQLDEAARVFEMNPGLKVEVQGNTDNV---GTYKYNMGLSLRR 232

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           A +    L+K GV   R++   G A H       P   A
Sbjct: 233 ANAVLNYLVKRGVDRSRLAA-RGSATHVPSHNDTPEGRA 270


>gi|239994128|ref|ZP_04714652.1| OmpA/MotB [Alteromonas macleodii ATCC 27126]
          Length = 398

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 220 TRTGILI-----SIIDQRN-----TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           T  G+ +     ++ D+         +FD  S++        + +  E +         I
Sbjct: 260 TPAGVKVDAKGCTVFDEETVEITLRVLFDNESAVVKMPKDPEISEFAEFMKQYPSTTAVI 319

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASD 325
            GHT A P       N  LS  RA +  +V++   G+   R+  I G+   +L     + 
Sbjct: 320 EGHTSA-PGSEAY--NMDLSKRRAANFKEVMVDMYGIEGSRLETI-GYGETQLLDNGKNA 375

Query: 326 PMNSANRRIDILVED 340
             +  NRRI + V+D
Sbjct: 376 EAHRVNRRISVTVKD 390


>gi|170736605|ref|YP_001777865.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169818793|gb|ACA93375.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
          Length = 234

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    +    L +            ++I G TD++     A  N  LS  RA + 
Sbjct: 131 FATDSAALTSQARNDLDRFIAANRGVEFARVAITGFTDST---GSAAHNRTLSEARARTV 187

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
              L  +G+     S    G A      A+    + NRR++I ++ +
Sbjct: 188 VNYLRSNGLQARSFSAEGLGAADPVASNATADGRAQNRRVEIRLDVK 234


>gi|163755848|ref|ZP_02162966.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
 gi|161324369|gb|EDP95700.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Kordia algicida OT-1]
          Length = 648

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQ 253
           +  L     D  ++ V     +  +   I D     +      FD   S   P+    L 
Sbjct: 497 AEALLPKQEDPGLREVTLLLEKEEVPFEIGDDLAVTLNIPIIYFDFDKSNIRPDAAAELA 556

Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K+  V+       I +R HTD+   R     N  LS  R  S    ++  G+   R++  
Sbjct: 557 KVIAVMKKYPTLKIDVRSHTDS---RGSDSYNMALSQRRNQSTRDYIISKGIDASRLTG- 612

Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
            G+   R           S+  +  NRR + +V ++
Sbjct: 613 RGYGETRHVNKCSNGVKCSEEEHQLNRRSEFIVVEK 648


>gi|149188853|ref|ZP_01867143.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1]
 gi|148837273|gb|EDL54220.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1]
          Length = 217

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +   P     L ++ + L      I+I GHTD++        N  L L RA +  
Sbjct: 107 FGFDQANLTPMGDEALNRLADTLGKQASNITIDGHTDST---GPEGYNQALGLKRALTTS 163

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             L+  GV ++ I  +  F   +    +      + NRR +I V
Sbjct: 164 DGLISKGVDKNHIV-VRSFGETKPIATNSTTEGRAQNRRSEIWV 206


>gi|254441098|ref|ZP_05054591.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198251176|gb|EDY75491.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 226

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         L++    +         + GHTD       +  N RL L RA + 
Sbjct: 83  FPFNSTALDASARATLRQQANWIRQFPEVRFKVFGHTD---LVGSSAYNRRLGLRRAEAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  F   +  I ++     NRR
Sbjct: 140 VLYLSSQGISRSRLEAVVTFGETQPLIVTEGRERRNRR 177


>gi|149369527|ref|ZP_01889379.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
 gi|149356954|gb|EDM45509.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
          Length = 631

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+    L K+  ++      V+    HTD+   R     N  LS  RA + 
Sbjct: 525 FDYDKHNIKPQAAFELDKVVTLMKKYPTMVVRAESHTDS---RATEAYNLALSNRRAQAT 581

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341
            Q ++  GV E RIS + G        +     +D  +S NRR +  + ++
Sbjct: 582 VQYIISKGVDEARISGV-GKGESTPINSCGDKCTDEQHSKNRRSEFTIVEQ 631


>gi|288962863|ref|YP_003453157.1| outer membrane protein [Azospirillum sp. B510]
 gi|288915129|dbj|BAI76613.1| outer membrane protein [Azospirillum sp. B510]
          Length = 347

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD   S   P +  ++    E    +  V I + GHTD          N +LSL RA
Sbjct: 241 QVFFDWDKSAITPNSDKIIADAAEAAGRARAVRIQVIGHTDT---SGSPSYNQKLSLRRA 297

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
            +  + L+  G   + I  I G   ++L + + P     +NRR  I+++
Sbjct: 298 EAVRKALVGHGTPAN-IISIEGVGENQLMVPTGPNVREPSNRRAQIMIK 345


>gi|317047599|ref|YP_004115247.1| OmpA domain-containing protein transmembrane region-containing
           protein [Pantoea sp. At-9b]
 gi|316949216|gb|ADU68691.1| OmpA domain protein transmembrane region-containing protein
           [Pantoea sp. At-9b]
          Length = 356

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQLYSQLSSLDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336
             RA S    L+  G+  ++IS   G         +  D +   N         RR++I
Sbjct: 285 EKRAQSVVDYLVSKGIPANKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLAPDRRVEI 342


>gi|197124092|ref|YP_002136043.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196173941|gb|ACG74914.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 386

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
              LP + V+L ++ + L       +++  HTD +     ++   RLS  RA +    L 
Sbjct: 287 DDLLPSSAVLLDELAQALRDHPRLRVAVEVHTDGAGEAAASK---RLSQARAEAVRAALA 343

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             G+  +R+    GF       ++      + NRR +I +  
Sbjct: 344 GRGIEAERVEA-KGFGAEHPIASNKTARGRAQNRRTEIRILP 384


>gi|86146732|ref|ZP_01065053.1| putative protein F-related protein [Vibrio sp. MED222]
 gi|85835579|gb|EAQ53716.1| putative protein F-related protein [Vibrio sp. MED222]
          Length = 197

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+ P P     L  +G  L+   +  + I GHTD +      R N  LS  RA   
Sbjct: 93  FKTGSTSPEPAYNNWLDTLGSYLSRRQDIDVVIEGHTDNT---GSDRVNDPLSEQRAKEV 149

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L  + VS   I    GF  +      AS    + NRR+++++
Sbjct: 150 KARLESNYVSSRAIY-TRGFGEYVPACNNASAQGKACNRRVELML 193


>gi|326336319|ref|ZP_08202490.1| outer membrane protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691493|gb|EGD33461.1| outer membrane protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 666

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +  V L KI EV+       I+I+ HTD+   R   + N  LS  RA S 
Sbjct: 558 FDFDKSNIRSDAEVDLAKIVEVMKEHPNIKIAIKSHTDS---RGSDQYNLALSDRRAKST 614

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            + ++K G++  R++   G+   +L          ++  +  NRR + ++ +
Sbjct: 615 LEWIVKQGITRSRLTA-KGYGETQLVNGCSNDVPCTEEEHQKNRRSEFIITE 665


>gi|323137848|ref|ZP_08072923.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322396851|gb|EFX99377.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 477

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 225 LISIIDQRNTPM-FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIAR 282
             ++ D   TP+ F+   S    ++  ++  +   VL      I +  HTD      I R
Sbjct: 363 RTALTDLARTPIIFETDDSAVAADSAPLVDALTATVLRCRAATIEVAAHTDNFGIEEINR 422

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
                +  RA      L+K+G    R+S  +G+   R    +  D   + NRR++ +V
Sbjct: 423 S---RTKRRAQVLVDRLIKAGADPSRVSA-AGYGSERPVAPNDSDENRARNRRVEFVV 476


>gi|220918872|ref|YP_002494176.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956726|gb|ACL67110.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 386

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
              LP + V+L ++ + L       +++  HTD +     ++   RLS  RA +    L 
Sbjct: 287 DDLLPSSAVLLDELAQALRDRPRLRVAVEVHTDGAGEAAASK---RLSQARAEAVRAALA 343

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             G+  +R+    GF       ++      + NRR +I +  
Sbjct: 344 GRGIEAERVEA-KGFGAEHPIASNKTARGRAQNRRTEIRILP 384


>gi|42527497|ref|NP_972595.1| OmpA family protein [Treponema denticola ATCC 35405]
 gi|41818082|gb|AAS12506.1| OmpA family protein [Treponema denticola ATCC 35405]
          Length = 452

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGH 271
           K      T+ G ++ + + +    F+   ++ L      L +I ++L  S      + GH
Sbjct: 330 KDFEVTKTKRGTMLRLKNLQ----FEPDRAVLLKGEEAKLDEIAKILKKSESEFFFVEGH 385

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSA 330
           T         +    LS +RA +  + L+K G+  ++ I + +G         ++   S 
Sbjct: 386 TADVGKPEEEKI---LSQERAKTVIEKLVKRGIPAEKFIYQGAGGTKPISPNGTEEGRSQ 442

Query: 331 NRRIDILV 338
           NRR++I +
Sbjct: 443 NRRVEITI 450


>gi|238797976|ref|ZP_04641466.1| OmpA domain protein [Yersinia mollaretii ATCC 43969]
 gi|238718181|gb|EEQ10007.1| OmpA domain protein [Yersinia mollaretii ATCC 43969]
          Length = 246

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 231 QRNTPMFDKSSSIPLPETI--VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
            +  P+FD +S    P T    +L  +  ++ ++    + I GH+D +   ++   N  L
Sbjct: 127 TQMAPLFDSNSIKLKPNTQTSEMLNSLLLLVENNQGRKVLIVGHSDNTGNASL---NMAL 183

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S  RA      L++          I G        ++D     S NRR+++L+  +Q
Sbjct: 184 SERRAQVVRDWLIQQSSLSIDDFIIRGMGALEPVASNDTKIGQSQNRRVEVLLLPKQ 240


>gi|57168474|ref|ZP_00367608.1| chemotaxis motB protein, putative [Campylobacter coli RM2228]
 gi|305432893|ref|ZP_07402051.1| chemotaxis motB protein [Campylobacter coli JV20]
 gi|57020282|gb|EAL56956.1| chemotaxis motB protein, putative [Campylobacter coli RM2228]
 gi|304444047|gb|EFM36702.1| chemotaxis motB protein [Campylobacter coli JV20]
          Length = 243

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 103/323 (31%), Gaps = 106/323 (32%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD                                T  +   Q  ++   Y  +
Sbjct: 53  ----VKIFD-------------------------------YTATQTVQQETQDTYKYKGS 77

Query: 137 SQQSEHCKNSLTRDSEKGKDLCK--STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
            ++ E   + L + +   +++ K     L++S N+E       +  E+  A      +QD
Sbjct: 78  QEEKEDELSKLKQMAVNQQEVIKKLQAALDQSENQEILNLPSKVEFERGSAQIVSADIQD 137

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             K+I+  +S L                 I I I                          
Sbjct: 138 YLKRIAQLISYLPPQ--------------IEIEI-------------------------- 157

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKIS 313
                         RG+TD S     +     L   RA +  + L++ GVS   I  K  
Sbjct: 158 --------------RGYTDNSDSALRSY---DLGYTRAENVLKYLIEGGVSTKNINLKSY 200

Query: 314 GFAHHRLKIASDPMNSANRRIDI 336
           G       I  +P    N R+ I
Sbjct: 201 GL---NSPINGNPQALENNRVQI 220


>gi|262198423|ref|YP_003269632.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081770|gb|ACY17739.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 1264

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD            +  ++  +L       +I I G+TD    R     N R+S  RA  
Sbjct: 1161 FDADRVRLRRHARRMFAEVAAILHAHPSLRLIQIEGYTDD---RGDLEANLRISQHRAEI 1217

Query: 295  AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
                L+  GV+E R+  + G+   R    +        NRR+++ +  
Sbjct: 1218 VRAFLIARGVAEHRLRAV-GYGSARPIGDNRSERGRELNRRVELRILR 1264


>gi|261880624|ref|ZP_06007051.1| immunogenic lipoprotein PG3 [Prevotella bergensis DSM 17361]
 gi|270332665|gb|EFA43451.1| immunogenic lipoprotein PG3 [Prevotella bergensis DSM 17361]
          Length = 222

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           L  K    ++   A  +    + E T   G+    +   +  +FD + +     +   L 
Sbjct: 65  LIGKHMDKVAAETAAQVKNAKVEEVTDANGLKAVKVTFDSGILFDLNQATLNSSSKKELA 124

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           K   VL  ++   + I G+TD          N  LS  RA S    L   GVS  ++  +
Sbjct: 125 KFSNVLKENSSCHVDIYGYTDR---SGNDAINVPLSQKRAQSVANYLSSCGVSNTQMQNV 181

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            G       I +  ++  NRR+++ +   Q 
Sbjct: 182 VGKGSQDE-IENKRVSKVNRRVEVYLYASQA 211


>gi|209525121|ref|ZP_03273665.1| OmpA/MotB domain protein [Arthrospira maxima CS-328]
 gi|209494530|gb|EDZ94841.1| OmpA/MotB domain protein [Arthrospira maxima CS-328]
          Length = 322

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 13/205 (6%)

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
           G    ++  +  EN   Y ++  Q ++   ++    E      +   +    N+     +
Sbjct: 99  GKVPNERLRELAENLAVYTASDLQIDNQIIAVDVPPEPIVTAGEVERMTGICNEMACVNI 158

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
                ++ + +  + R    A+ I +    +           ++  + + I  +   N  
Sbjct: 159 ESNYSDRQVIISGQVRHMRDAQIIPAAFDNIPG--------VKSVFSTLKIDPVRIENRI 210

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  S+   P+ + ++ +I E L    +  + I GHTD    R  A  N +L+L+RA +
Sbjct: 211 YFNFGSAQINPQDMKIITRITEFLDQYPKLSLRIIGHTD---LRGSAAINQQLALNRATA 267

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L K G+   R+  I G A   
Sbjct: 268 VRDALTKQGIDPKRLE-IVGNAQPP 291


>gi|149202036|ref|ZP_01879009.1| OmpA domain protein [Roseovarius sp. TM1035]
 gi|149144134|gb|EDM32165.1| OmpA domain protein [Roseovarius sp. TM1035]
          Length = 635

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 21/116 (18%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I +VL       + I GHTD+         N +LSL RA + 
Sbjct: 499 FEPGSAKIDAQGAAIMDDIADVLKKCGEVRMEIGGHTDSQ---GGEDMNAQLSLSRARAV 555

Query: 296 YQVLMKSGVSEDRISKI-------SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
                   + E R+ ++        G+        ++       NRRI+  +   +
Sbjct: 556 --------LDELRMRRVLTSSIDAKGYGESVPIADNETEEGRETNRRIEFRLIRPE 603


>gi|330447940|ref|ZP_08311588.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492131|dbj|GAA06085.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 298

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           D R+  + F+    +        L  +   L H      + I GHTD       +  N +
Sbjct: 177 DARDVVLQFNLGQRVVSSSQKQTLVDLASYLKHDKNIKRVLIDGHTDNV---GSSVANLQ 233

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +S  RA     +L ++GV    + +I           ++     + NRR+ I
Sbjct: 234 ISKVRADDVASILRENGVRSS-LMEIRSHGSRYPVANNNTQQGKAKNRRVTI 284


>gi|294673972|ref|YP_003574588.1| OmpA family protein [Prevotella ruminicola 23]
 gi|294472547|gb|ADE81936.1| OmpA family protein [Prevotella ruminicola 23]
          Length = 679

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               +D + +   PE+   L ++  +L  +  V I +  HTD    R     N RLS  R
Sbjct: 522 ENIFYDFNKATLRPESKTALDQLVVLLNQNPNVTIELSAHTDC---RGSEAYNQRLSQQR 578

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A S    L+  G++ DR++   G+     K
Sbjct: 579 AESVVAYLIAHGIAADRLTP-KGYGESMPK 607


>gi|156319761|ref|XP_001618159.1| hypothetical protein NEMVEDRAFT_v1g225448 [Nematostella vectensis]
 gi|156197754|gb|EDO26059.1| predicted protein [Nematostella vectensis]
          Length = 294

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    +  + L KI EV+  +    + +R HTD+   R  A  N  LS  RA + 
Sbjct: 186 FDLNKSNIRKDAALELAKIVEVMKENPSIKVDVRSHTDS---RQSAEYNEELSDKRAKAT 242

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              ++K G+S DR++   G+   +L          S+  + ANRR + +V
Sbjct: 243 VAWMVKKGISADRLTA-KGYGESQLVNKCSDGVECSEEEHQANRRSEFIV 291


>gi|319952094|ref|YP_004163361.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319420754|gb|ADV47863.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 370

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
           +  +   +   KK S   +    D +   ++   T+  + +         +FD   +   
Sbjct: 208 INNEDTFKQEVKKASRKSAYYFIDMVSVTLIPSYTQNQLYVI-----EELLFDFDETSIE 262

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            +    L  +   L  + +  + + GHTDA    ++  ++  LS  RA +    L+KSG+
Sbjct: 263 IDYNQQLSDLVTYLKSNPKLNVYLYGHTDAM--GSVKYND-DLSEKRAATVASFLVKSGL 319

Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
           S++RIS   GF   +  ++++  +    NRR++ LV + Q
Sbjct: 320 SKNRISW-KGFGFKKPVVSNEKEDIRFKNRRVEFLVAEPQ 358


>gi|313205367|ref|YP_004044024.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312444683|gb|ADQ81039.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 446

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F ++S   + E    L+++ ++L  +    + I GHT         ++N R+ L RA S 
Sbjct: 342 FTQNSDKTIHEEADKLKELTDMLKANPNQCLQITGHTCNW---GTRKNNLRIGLRRANSV 398

Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338
              L+K G    +I  +  G A   +   S+     NRR++I V
Sbjct: 399 KSKLIKQGAPAKKIFTESKGEAEPLVPNTSEVNRKKNRRVEIKV 442


>gi|86132613|ref|ZP_01051206.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85816855|gb|EAQ38040.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 650

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   P+  + L K+   +    E VI++R HTD+   R     N  LS  RA S 
Sbjct: 542 FDYNKSDIRPDAALELTKVISAMKQVPEMVINVRSHTDS---RGKDSYNLSLSDRRAKST 598

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
              ++  G++ +RIS  +G+   +L          ++  +  NRR + +V ++
Sbjct: 599 VAYIISRGINAERISG-NGYGETQLVNGCGNNSDCTEEQHQLNRRSEFIVVNQ 650


>gi|259417800|ref|ZP_05741719.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346706|gb|EEW58520.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 345

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 21/194 (10%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
           +  E+              N   +          +     +  L D  KK  S  +G + 
Sbjct: 166 QMLERHDPSQSLRPSGGPSNGGRDTSDGAELGSDVTDAAEQALLVDAIKKGGSLTTGAIR 225

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-IS 267
           D ++          G  + ++D      FD +S+         L+++ E L  +    I 
Sbjct: 226 DLLL--------LQG-RVPLLDLE----FDTASTQMGEGPFDSLRQLAEFLDQNKSATIL 272

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP 326
           + GHTD          N  LS  RA S  + L  + G+   RI +++G  +      +  
Sbjct: 273 LVGHTDTV---GGLEGNIALSRRRAISVRERLTTRYGIDGGRI-QVAGAGYMAPLAPNTT 328

Query: 327 MNSA--NRRIDILV 338
                 NRR++ ++
Sbjct: 329 ETGRETNRRVEAVL 342


>gi|170725100|ref|YP_001759126.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810447|gb|ACA85031.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 497

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F+  S   LPE   V++ +   L    +    + GHTD          N  LS  R
Sbjct: 387 DGLLFEFDSDKMLPEAKAVVKVVASYLKSHPKQRFYVIGHTDDQ---GKQSYNQLLSDKR 443

Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
           A +  + L  +  + +D+++   G   +      +++     NRR+++++   Q
Sbjct: 444 AKAVVKQLTTAHQIPKDQLTG-KGVGEYSPVANNSNEAGQKLNRRVELVLRSDQ 496


>gi|163789308|ref|ZP_02183749.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
 gi|159875376|gb|EDP69439.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
          Length = 680

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +  + +QK+  VL       I IR HTD    R  A  N +LS  RA S 
Sbjct: 558 FDFDKSNIRYDAEIEIQKVLAVLNKYPTMHIDIRSHTDC---RGPASYNEKLSDRRAKST 614

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----ASDPMN------SANRRIDILVEDRQG 343
            Q L+  G++ +R++   G+   RL        ++  +        NRR + ++    G
Sbjct: 615 RQYLIDKGIAAERLTA-KGYGESRLVNDCGCEPTNESSCSQEEHQLNRRSEFIITSING 672


>gi|91792716|ref|YP_562367.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91714718|gb|ABE54644.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 209

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + S  L     +L+KI  +   S   I++ GHTD          N  LSL RA +  
Sbjct: 105 FEFAKSQVLQTQKPLLKKIAMLANQSGAKITLVGHTD---IIGSEAFNQNLSLKRAMNVS 161

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            VL+   G+    I    G         +   N    NRR++I +
Sbjct: 162 AVLVAEYGLMASDIH-YYGVGSTEPADDNATANGRQANRRVEITI 205


>gi|90407861|ref|ZP_01216037.1| hypothetical outer membrane protein OmpA [Psychromonas sp. CNPT3]
 gi|90311036|gb|EAS39145.1| hypothetical outer membrane protein OmpA [Psychromonas sp. CNPT3]
          Length = 339

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           S  ++       V+ V  +      ++ I  ++    F   SS+   E++  L  + E L
Sbjct: 194 SQLVAEEPVQEKVEAVKEKVQDK--MMKIASEKVQVAFPFGSSVLSEESMQQLTPVIEHL 251

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAH 317
               +  + + GHTDA      A  N   S+ RA +    L  +  + + R++ +SG   
Sbjct: 252 KAYPDAKLFLVGHTDA---SGPAEYNQTFSVKRADALATYLSEEFSIDKSRMT-VSGEGE 307

Query: 318 HRLKIASDPM--NSANRRIDIL 337
                 +D     + NRR+ + 
Sbjct: 308 SMPIATNDTTEGRAMNRRVSVF 329


>gi|167589725|ref|ZP_02382113.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 241

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    +    L +            ++I G+TD++        N RLS  RA S 
Sbjct: 138 FDVDSAKLTLDARRQLDQFLNTNKGVGFQRVTITGYTDST---GSLAHNRRLSESRARSV 194

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
              L   G+   +     G        ++      + NRR++I V  
Sbjct: 195 ATYLRTGGLQAAQFVS-EGMGPSDPVASNATADGRAQNRRVEIQVVP 240


>gi|294508723|ref|YP_003572782.1| chemotaxis MotB protein [Salinibacter ruber M8]
 gi|294345052|emb|CBH25830.1| chemotaxis MotB protein [Salinibacter ruber M8]
          Length = 227

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 235 PMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLS 288
            +F+  ++         L+  I  +        + + GH D +P           NW LS
Sbjct: 101 SLFEAGTATLTAAGKKRLRATIAHLETAYPTRAVRVEGHADDTPLSEALQERFASNWELS 160

Query: 289 LDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS 324
             RA +  + L  +S ++  + + ++ +       ++
Sbjct: 161 AARATAVVRYLSARSALAPSQFAALA-YGATDPVASN 196


>gi|229837675|ref|ZP_04457837.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A]
 gi|229704363|gb|EEO91374.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A]
          Length = 513

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 381 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 437

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           +    +L  S VS      + G+   R    +D  +    NRR++I +  +
Sbjct: 438 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRVLNRRVEISLVPQ 487


>gi|170723153|ref|YP_001750841.1| peptidoglycan-associated lipoprotein [Pseudomonas putida W619]
 gi|169761156|gb|ACA74472.1| peptidoglycan-associated lipoprotein [Pseudomonas putida W619]
          Length = 165

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163


>gi|110637108|ref|YP_677315.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110279789|gb|ABG57975.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 841

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289
           Q+ +  FD   SI        L  +           I + GHTD++ +      N +LS 
Sbjct: 19  QQLSVFFDSGKSILSEREKQRLDSLIYTFETELIYDIRLVGHTDSTGYPEK---NKQLSK 75

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRR--IDILVED 340
            RA + Y  L K        S I+G        A+  D   + NRR  I I V +
Sbjct: 76  ARAIAVYTYLSKR--KNIHFSSITGKGSLSPVQANTTDAGRAHNRRCDISITVSN 128


>gi|90022173|ref|YP_528000.1| peptidoglycan-associated lipoprotein [Saccharophagus degradans
           2-40]
 gi|89951773|gb|ABD81788.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 163

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   ++   E    L    +V+  +   I + GH D    R     N  L   RA +  
Sbjct: 64  FDFDQAMLRSEARAALLIHAKVIKETNASIRLEGHADE---RGSREYNMALGERRANAVR 120

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
             L+  GV    I  +S       ++ S+    S NRR++I
Sbjct: 121 DFLVLQGVPSYSIETVSYGEERAAQVGSNESAWSKNRRVEI 161


>gi|241761684|ref|ZP_04759771.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373992|gb|EER63525.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 363

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD       PE   +L  +    A + +  + + G+TD       A+ N  LS  RA S
Sbjct: 256 FFDFDKYNITPEAASILDNVASSYAQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 312

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L+  GV +D +     +    L + +        NRR++I
Sbjct: 313 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 355


>gi|237752333|ref|ZP_04582813.1| OmpA/MotB [Helicobacter winghamensis ATCC BAA-430]
 gi|229375822|gb|EEO25913.1| OmpA/MotB [Helicobacter winghamensis ATCC BAA-430]
          Length = 276

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           ++   +  +    +  + I S +     +             G    I+      +FD+ 
Sbjct: 74  QQQADITVEPETAEEVRLIESAILDFKENVKTSLGPSNIIDEGSEGFILRFSGKLLFDEG 133

Query: 241 SSIPLPETIVV-LQKIGEVLAHSTE--VISIRGHTDASPFRNI--ARDNWRLSLDRAYSA 295
                    V+ L+++  +L        + + G+TD          +D+  LS  RA   
Sbjct: 134 EITLNDADEVLFLKRLALILQKMPSTLHLDVIGYTDNRTISPTPKFKDDIGLSALRALGV 193

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            +VL+++GV+  +++ +  G  +  L   +      NRR++
Sbjct: 194 ERVLLENGVNPKKMTALGNGATNFILPNTTKENRQKNRRVE 234


>gi|46447485|ref|YP_008850.1| peptidoglycan-associated lipoprotein precursor (pal) [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401126|emb|CAF24575.1| probable peptidoglycan-associated lipoprotein precursor (pal)
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 246

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
            +     T  FD  SS+   +  +  + +I + +     V I I GHTD    R     N
Sbjct: 132 QLAAIFKTIYFDYDSSMIKGQANLQTIHQIADFMRRHPNVYIFIEGHTDE---RGPQAYN 188

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
             L   R+ +   +L+   V+ D +  IS G     +    +   S NRR++  + +R
Sbjct: 189 LALGSRRSNAVRNLLISEDVNPDNLFTISYGKERPVVLEKHEEGWSRNRRVEFKIYER 246


>gi|312881847|ref|ZP_07741618.1| sodium type flagellar protein MotY precursor [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370493|gb|EFP97974.1| sodium type flagellar protein MotY precursor [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 293

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D+SS     ++   L KI E +  + ++  + +  +TD    ++ ++    LS  RA +
Sbjct: 187 YDRSSVELNKQSQKRLAKIAEYIKQTKDIDLVLVSTYTDNEDSKSASQG---LSEQRAKA 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +     G+ EDRI ++ G+   R    +        NRR+ I +
Sbjct: 244 LQRYFKSLGLPEDRI-QVQGYGKRRPIDDNASPIGKDRNRRVVISL 288


>gi|327404631|ref|YP_004345469.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320139|gb|AEA44631.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 798

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 23/132 (17%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278
           T  G+ +      N   FD +     P+    L KI E++  +    I +  HTD+   R
Sbjct: 675 TDIGLNV------NPIYFDYNKWDIRPDAAKELDKIVEIMKKNPNIKIELGSHTDS---R 725

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---------- 328
                N +LS  RA ++ + ++  G++  RI+   G+   +LK++ + +N          
Sbjct: 726 GKDDYNIKLSDQRAKASARYIVSKGIAAGRITG-KGYGETKLKVSDEQINNMPKWDEKEK 784

Query: 329 --SANRRIDILV 338
               NRR + ++
Sbjct: 785 GHQLNRRTEFII 796


>gi|197119091|ref|YP_002139518.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem]
 gi|197088451|gb|ACH39722.1| OmpA family outer membrane protein, DUF11 domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 2000

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    S    E   +L+    VL     E + + GHTD     ++   N  LS  R  +A
Sbjct: 1731 FVFDRSELTLEAKHLLKGAARVLRARPQEKVIVEGHTDG--IGSVEY-NMALSQRRCDAA 1787

Query: 296  YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
               L++  G++  R+ +   +   R    +   P    NRR+++
Sbjct: 1788 ADYLVREEGIAGSRLLR-RWYGKSRPVADNVTTPGRRLNRRVEL 1830


>gi|126663670|ref|ZP_01734666.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
 gi|126624253|gb|EAZ94945.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
          Length = 625

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + S    E    L K+  V+    E++     HTD+   R     N +LS  RA S 
Sbjct: 520 FEFNKSNITAEGAAELDKLVAVMNEYPEMVIFAKSHTDS---RGSDSYNMKLSDRRAKST 576

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDR 341
            Q L+  G++++RIS   GF     K+A    ++  ++ NRR + L+  +
Sbjct: 577 VQYLISKGIAKERISG-QGFGESEPKVACKSCTEEEHAQNRRSEFLIVKK 625


>gi|115375610|ref|ZP_01462867.1| putative outer membrane lipoprotein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367386|gb|EAU66364.1| putative outer membrane lipoprotein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 206

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 24/170 (14%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
            +LA+      Q   ++            + K +  + T          ++N   F   +
Sbjct: 46  SLLAVPGMALAQSPVEQFKKAAGKASKSTLEKKINTKLTEDA-------RKNQCSFKTGT 98

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI----------SIRGHTDASPFRNIARDNWRLSLDR 291
            +        L+ +   L  + + +           + GHTD+      A  N  LS  R
Sbjct: 99  DVLEAGCDQKLKNLTAALVEAKKQLDAGGVKNYQFEVSGHTDS---SGDAAKNKALSEKR 155

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILV 338
           A    + L+  G+    I  + G    +  +  D      + NRR +I V
Sbjct: 156 AAVIVKELVSRGIPRAEILAV-GRGSEQPLVKPDDTAAKKAKNRRYEIQV 204


>gi|218676771|ref|YP_002395590.1| hypothetical protein VS_II1010 [Vibrio splendidus LGP32]
 gi|218325039|emb|CAV26876.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 751

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FD 238
            +K L     K L+ L       L   + D+    +  E  +      I + R+T   FD
Sbjct: 549 GDKALLNAETKALEQLK-----NLLPNLGDSDELSLNTEVKKGQ---HIFELRSTTFAFD 600

Query: 239 KSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +S+S    +    L ++G +L+       I+I+GHT +   R     N  LS +RA    
Sbjct: 601 RSNSD-NRKARDSLIELGGILSQIHRPIPITIKGHTCS---RGSIEYNQTLSEERAIYIR 656

Query: 297 QVLMKSGVSEDRIS-----KISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  +  G++ ++ +     +  G       + +D       NRR+D+L+
Sbjct: 657 E-CILEGITSNQAAWKTCIRTIGLGERDPLVPNDSEDQRRRNRRVDLLL 704


>gi|126727783|ref|ZP_01743613.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150]
 gi|126702910|gb|EBA02013.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150]
          Length = 630

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++     ++  + K+ E     S   + I GHTD+         N  LS  RA + 
Sbjct: 503 FAPGAADIEATSLSTIDKLTEAFQGCSEVAMEIGGHTDSQ---GRETMNLNLSQQRADAV 559

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
              L+  GV    ++   G+        +  +     NRRI+ ++
Sbjct: 560 LNGLLARGVLTSNLTA-KGYGETVPIADNGTEEGREENRRIEFVL 603


>gi|330994155|ref|ZP_08318083.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
 gi|329758622|gb|EGG75138.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1]
          Length = 411

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 265 VISIRGHTD---ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            I + G+TD   A P       N  LSL RA      L++ GV    I  I G+      
Sbjct: 333 RIEVNGYTDNSAARPGPQGEHYNQALSLKRAQVIKAELVRDGVPGPAID-IHGYGDANPL 391

Query: 322 IAS--DPMNSANRRIDILV 338
           + +  +   + NRR++I++
Sbjct: 392 VQTGANTREAQNRRVEIIL 410


>gi|85703482|ref|ZP_01034586.1| OmpA domain protein [Roseovarius sp. 217]
 gi|85672410|gb|EAQ27267.1| OmpA domain protein [Roseovarius sp. 217]
          Length = 635

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 92/326 (28%), Gaps = 30/326 (9%)

Query: 29  NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
             GS  I ++D    L+A          T       +         ++   +  +     
Sbjct: 296 GGGS--ITFSDADVALLA-------PEGTPQSDFDDVAGKLEADLPDVFALTATL----- 341

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           PP   +   +       ++     L  G    +   + + +      +S           
Sbjct: 342 PPPPDTAEPVAPEFVATLSPEGQVLIRGRVGSETSRETVRSFAKARFSSNAVHLTARVAE 401

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                      +     S        + P +        RK    ++A+ +S  L G   
Sbjct: 402 GLPRDWSIRVLTGLEVLSYLSNGVVTVTPDNLSVQGNTGRKSASAEIAQFLSDKLGGAEK 461

Query: 209 -------DNIVKGVLFETTRTGILISIIDQRN--TPMFDKSSSIPLPETIVVLQKIGEVL 259
                     +  V    T       I + ++     F+  S+    +   ++  I ++L
Sbjct: 462 YSIDVTYKKALDPVAGLPTPDECEAQIAEIQSTRKINFEPGSATIDAQGAAIMDDIADIL 521

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
               E  + I GHTD+         N +LSL RA +    L    V    I    G+   
Sbjct: 522 KDCGEIPMVIGGHTDSQ---GREEMNEQLSLARARAVLDELRLRRVLTSSIDA-KGYGES 577

Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342
                ++       NRRI+  +   +
Sbjct: 578 TPIADNETEAGRETNRRIEFRLIRPE 603


>gi|167035188|ref|YP_001670419.1| peptidoglycan-associated lipoprotein [Pseudomonas putida GB-1]
 gi|166861676|gb|ABZ00084.1| peptidoglycan-associated lipoprotein [Pseudomonas putida GB-1]
          Length = 166

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164


>gi|113970709|ref|YP_734502.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113885393|gb|ABI39445.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 290

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D+  +     +   L +I E L++  +V  + +  +TD+   R++   N ++S  RA S
Sbjct: 184 YDEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
                + SG+ +DRI  + G    R   +++     + NRR+ I +
Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNEDIEERALNRRVVIRI 285


>gi|83816525|ref|YP_446790.1| OmpA family protein [Salinibacter ruber DSM 13855]
 gi|83757919|gb|ABC46032.1| OmpA family protein [Salinibacter ruber DSM 13855]
          Length = 227

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 235 PMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLS 288
            +F+  ++         L+  I  +        + + GH D +P           NW LS
Sbjct: 101 SLFEAGTATLTAAGKKRLRATIAHLETAYPTRAVRVEGHADDTPLSEALQERFASNWELS 160

Query: 289 LDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS 324
             RA +  + L  +S ++  + + ++ +       ++
Sbjct: 161 AARATAVVRYLSARSALAPSQFAALA-YGATDPVASN 196


>gi|260062573|ref|YP_003195653.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501]
 gi|88784140|gb|EAR15310.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501]
          Length = 375

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 13/187 (6%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           ++       EK+  +EE        ++ I   +       L ++          +   + 
Sbjct: 186 EEGLTRKGAEKAAMREELLAALQRRQDSIRQAEEAAEQARLLQEQEEQRLAAQREEAARK 245

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
                 +  +   + D      F   SS    E    L+ I   +  + E   SI+ H D
Sbjct: 246 AAEAARKDALKREL-DSIGGLRFAFDSSYLDAEAKAKLEAIAAFMKRNPELTFSIQAHAD 304

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326
           +        + W L+  RA      L   G+  +R+ ++ G    +L          +  
Sbjct: 305 SR--GPEKYNQW-LTERRAQRVADYLTGEGIRMERL-QVEGLGESQLLNHCSDGVRCTAA 360

Query: 327 MNSANRR 333
            ++ NRR
Sbjct: 361 EHAVNRR 367


>gi|126090250|ref|YP_001041705.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125999881|gb|ABN63950.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 333

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIG 256
           TL   ++    K V+ ET+   +  S     +  M     FD   +    + I  L ++ 
Sbjct: 186 TLIKELSTPATKTVIVETSPQTLTFS-----SKSMNVIWGFDA--TKLSHDFIEQLAEVV 238

Query: 257 EVLAHSTE-VISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           EVL    +  +++   GH D+    + A  N  LS  RA +    L++ GVS  +I  + 
Sbjct: 239 EVLNTYPQARVAVLAVGHADS--IGSEAY-NQALSEKRAQTVANKLLELGVSPAQIE-VQ 294

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G         +      + NRR+++ +
Sbjct: 295 GEGESHPVANNQTADGRAKNRRVEVSI 321


>gi|283856455|ref|YP_163089.2| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775459|gb|AAV89978.2| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 366

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD       PE   +L  +    A + +  + + G+TD       A+ N  LS  RA S
Sbjct: 259 FFDFDKYNITPEAASILDNVASSYAQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 315

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L+  GV +D +     +    L + +        NRR++I
Sbjct: 316 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 358


>gi|90412130|ref|ZP_01220136.1| putative peptidoglycan-associated lipoprotein [Photobacterium
           profundum 3TCK]
 gi|90326854|gb|EAS43239.1| putative peptidoglycan-associated lipoprotein [Photobacterium
           profundum 3TCK]
          Length = 174

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 209 DNIVKGVLFETTRTG--------ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL- 259
           D   + V+      G        +    + Q  T  F   ++    +   +L+   E L 
Sbjct: 38  DGSAQTVVTTPVDGGSAALSEQELRSQELRQEQTVYFKFDTAEIQADYQAMLEAHAEYLS 97

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             S   + + GH D    R     N  L   RA +  Q L   GVS  +IS +S +   +
Sbjct: 98  NSSDVKVIVEGHADE---RGTPEYNIALGERRANAVAQYLQALGVSASQISIVS-YGEEK 153

Query: 320 LKI--ASDPMNSANRR 333
             +   +D   + NRR
Sbjct: 154 PLVLGHTDADYAKNRR 169


>gi|99082304|ref|YP_614458.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99038584|gb|ABF65196.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 352

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +S+         L+ +   ++     VI + GHTD        + N  LS  RA S 
Sbjct: 248 FDTASAQVGEGPYDSLKHLATFMSDHESAVILLVGHTDTV---GGLQGNIALSERRAASV 304

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            + L+ + GV   RI +++G  +      +  +     NRR++ ++  
Sbjct: 305 RERLITRYGVDGARI-QVAGAGYMAPLAPNTSEEGREINRRVEAVLVR 351


>gi|261253096|ref|ZP_05945669.1| outer membrane protein [Vibrio orientalis CIP 102891]
 gi|260936487|gb|EEX92476.1| outer membrane protein [Vibrio orientalis CIP 102891]
          Length = 204

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AH 261
           +   V ++     + E  +  + I         +F   S    P     +Q + + L  +
Sbjct: 60  IGAQVDNDGCGAAIVEEEQRQLRI---------LFANDSYEINPIFSDQIQTMAQFLEKY 110

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +  I I+G+  AS   +    N  LS  RA++    L+   V   R++ I G+   RL+
Sbjct: 111 QSASIQIQGY--ASKVGDPEY-NLELSKKRAHAVEDELLYFEVDPKRVT-IVGYGESRLE 166

Query: 322 I--ASDPMNSANRRID 335
                +  ++ NRR+ 
Sbjct: 167 AEGDDETSHALNRRVT 182


>gi|167946599|ref|ZP_02533673.1| OmpA/MotB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 126

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           +    NW LS  RA S  + L   G+ + R++  +GF         D   +   NRRI+
Sbjct: 16  SSVPSNWELSSARAVSVVRYLASQGIPQRRLTA-AGFGEFHSIDTGDTPEALSHNRRIE 73


>gi|294083749|ref|YP_003550506.1| OmpA/MotB domain-containing protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663321|gb|ADE38422.1| OmpA/MotB domain protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 270

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 51/213 (23%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
           YF   L  +        +   D   +I   L   +  N    +  +  +  + +      
Sbjct: 39  YFSYQLKIQSEAQDDYAQSATDHRTQILDELKDYLEGNGQIKIEIDAEQGILRV-----P 93

Query: 233 NTPMFDKSSSIPLP-------------------------ETIVVLQKIGEVLAHSTEV-- 265
              +FD   +  L                          E + V     +  + +     
Sbjct: 94  EGVLFDSGVADILEGSNADFFSAKLAAAFAAVIRCSVLNEGLKVFDGSEKCRSKNVNRAF 153

Query: 266 ---ISIRGHTDASPFRNIAR------DNWRLSLDRAYSAYQ-------VLMKSGVSEDR- 308
              I I GHTD SP R   R       N RLS  RA + Y+       VL      ++  
Sbjct: 154 IESIFIEGHTDNSPIRGGLRGNVKINSNLRLSARRATNTYENMIAKKPVLEAFKSPKNEP 213

Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +  +S +   R    +   +  + NRRIDI + 
Sbjct: 214 VFAVSAYGKTRPIDTNSTSSGKANNRRIDIRLL 246


>gi|221200311|ref|ZP_03573353.1| OmpA family protein [Burkholderia multivorans CGD2M]
 gi|221205990|ref|ZP_03579004.1| OmpA family protein [Burkholderia multivorans CGD2]
 gi|221174002|gb|EEE06435.1| OmpA family protein [Burkholderia multivorans CGD2]
 gi|221179652|gb|EEE12057.1| OmpA family protein [Burkholderia multivorans CGD2M]
          Length = 277

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F KSS    LP     L   I ++ A   T  I + GHTD        + N  LS  RA 
Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDQSNRALSRARAE 221

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL----KIASDPM----NSANRRIDILV 338
           +  + L+  G+   RI ++ G    +          P        +RR+ I V
Sbjct: 222 TVKRYLVAHGLDAARI-RVEGAGSSQPVSHCPSGETPAVIACLQKDRRVTITV 273


>gi|39997403|ref|NP_953354.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens PCA]
 gi|39984294|gb|AAR35681.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens PCA]
          Length = 187

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  + +   E   +L    E L  +  V  I  GHTD    R     N  L   RA SA
Sbjct: 85  FDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGHTDE---RGSDAYNLALGEQRAKSA 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            + L   G+   R++ +S +   +  +    +   + NRR++ +
Sbjct: 142 MKYLQTLGIDAGRMTVVS-YGEEKPAVEGHDESAWAGNRRVEFI 184


>gi|110636642|ref|YP_676849.1| outer membrane porin F [Cytophaga hutchinsonii ATCC 33406]
 gi|110279323|gb|ABG57509.1| outer membrane protein, porin F precursor [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 669

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 12/133 (9%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           K +      TG ++ +    N   FD +      E+   L ++  +L ++    I I G+
Sbjct: 545 KDLYITPIETGQVVVL----NNVFFDFNKYELKSESYPELDRLVTLLKNNNAMKIEISGY 600

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           TD+      + ++ +LS  RA +    L+ KS + + RI+ +  F       ++      
Sbjct: 601 TDS--IGTKSYND-KLSGRRAQAVATYLITKSAIDKSRIT-VKAFGEENPVTSNKTAKGR 656

Query: 331 --NRRIDILVEDR 341
             NRR++  + ++
Sbjct: 657 ELNRRVEFKITNK 669


>gi|91201947|emb|CAJ75007.1| similar to H+-driven flagellar motor component MotB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSA 295
           F +  +    E +  L  +  + A    ++ + GHT  A         +W+LS+DRA + 
Sbjct: 124 FKEHGATLSLEGMHSLNNLVNLTADRPVLLMVEGHTRVAFKPSKDYETSWKLSVDRARAV 183

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              L + G    +     G  ++   + S   +  N R+ I+++
Sbjct: 184 ADYLHEKGNISHKRLITVGHGNNNSFVKSPGGDRFNDRVSIIIK 227


>gi|312131656|ref|YP_003998996.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132]
 gi|311908202|gb|ADQ18643.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132]
          Length = 418

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++ S++    +   +  I E+L    +V I I G+TD +        N +LS +RA + 
Sbjct: 315 FEQGSALIDASSQKEVDNIAEILKAYPDVNIKIGGYTDNT---GSDEINTKLSAERAANV 371

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
              L+  G+   R+    G+        +        +RRI + V  +
Sbjct: 372 LAALVDRGIEASRLES-EGYGPLHPIADNSTEEGREQDRRIAVRVTKK 418


>gi|226945712|ref|YP_002800785.1| peptidoglycan-associated outer membrane lipoprotein [Azotobacter
           vinelandii DJ]
 gi|226720639|gb|ACO79810.1| peptidoglycan-associated outer membrane lipoprotein [Azotobacter
           vinelandii DJ]
          Length = 179

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L      L  +   + + GHTD    R     N  L   RA +  
Sbjct: 80  FEYDSSDLKPEAMRALDVHARDLKGNGARVVLEGHTDE---RGTREYNMALGERRAKAVQ 136

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
           + L+  GVS  ++  +S +   R     A +   + NRR+++
Sbjct: 137 RYLVLQGVSPAQLELVS-YGEERPVAGGADEQSWAQNRRVEL 177


>gi|26987958|ref|NP_743383.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas putida
           KT2440]
 gi|148546495|ref|YP_001266597.1| peptidoglycan-associated lipoprotein [Pseudomonas putida F1]
 gi|60392879|sp|P0A138|PAL_PSEPK RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|60392880|sp|P0A139|PAL_PSEPU RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|24982671|gb|AAN66847.1|AE016313_6 peptidoglycan-associated lipoprotein OprL [Pseudomonas putida
           KT2440]
 gi|663068|emb|CAA52294.1| OprL protein [Pseudomonas putida]
 gi|148510553|gb|ABQ77413.1| Peptidoglycan-associated lipoprotein [Pseudomonas putida F1]
 gi|313497575|gb|ADR58941.1| OprL [Pseudomonas putida BIRD-1]
          Length = 166

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164


>gi|260891273|ref|ZP_05902536.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260858949|gb|EEX73449.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 367

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F     +P       L+ I  V+        I   GHTD++     A  N +LS+ RA +
Sbjct: 251 FKVDGRVPNEGEAADLRTIAGVINQFADGGSIDFVGHTDST---GSAAYNQKLSVARAQN 307

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             ++L + G+    IS   I+G         +D +     NRR+++  ++
Sbjct: 308 VAKLLREYGLKNT-ISYGTITGQGESNPADTNDTVEGRYNNRRVELFFQN 356


>gi|86146029|ref|ZP_01064356.1| Outer membrane protein [Vibrio sp. MED222]
 gi|85836234|gb|EAQ54365.1| Outer membrane protein [Vibrio sp. MED222]
          Length = 278

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 19/211 (9%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + ++I K+            + A      ++KRL +L  +
Sbjct: 67  AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126

Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +    S        +     +          +  +D +    F ++S+   P+ +  L +
Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182

Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              +L  H +  + + GH DA+      + N  L+L RA    + L   G+   RI  +S
Sbjct: 183 ATTLLNKHKSLDLVVTGHADAT---GTEKFNDDLALGRAKQVERYLTIFGLGAQRIKAVS 239

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342
                       SD     NRR+ I +   +
Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEIISPK 269


>gi|118591641|ref|ZP_01549037.1| OmpA/MotB [Stappia aggregata IAM 12614]
 gi|118435634|gb|EAV42279.1| OmpA/MotB [Stappia aggregata IAM 12614]
          Length = 222

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD +S+    +    L ++  +L+          + GHTDA   +  A+ N  LS  RA
Sbjct: 116 LFDYNSASLRHDQAAKLAELSRMLSQEKFKNYRFLLLGHTDA---KGSAQYNLTLSQQRA 172

Query: 293 YSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +    +   G +SE+R+   SG    +LK   DP    NRR+ +++  
Sbjct: 173 QTIAGFVTAWGSLSEERVLA-SGMGASKLKDQGDPYGEQNRRVQLVLLP 220


>gi|84385524|ref|ZP_00988555.1| Outer membrane protein [Vibrio splendidus 12B01]
 gi|84379504|gb|EAP96356.1| Outer membrane protein [Vibrio splendidus 12B01]
          Length = 278

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 19/211 (9%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + ++I K+            + A      ++KRL +L  +
Sbjct: 67  AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126

Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +    S        +     +          +  +D +    F ++S+   P+ +  L +
Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182

Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              +L  H +  + + GH DA+        N  L+L RA    + L   G+   RI  +S
Sbjct: 183 ATTLLKEHKSLDLVVTGHADAT---GTEEYNDDLALGRAKQVERYLTIFGLGAQRIKAVS 239

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342
                       SD     NRR+ I +   +
Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEIISPK 269


>gi|126736947|ref|ZP_01752682.1| OmpA family protein [Roseobacter sp. SK209-2-6]
 gi|126721532|gb|EBA18235.1| OmpA family protein [Roseobacter sp. SK209-2-6]
          Length = 187

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+   R     N RLS  RA +  +V    G    RI ++ G+     +  ++  
Sbjct: 119 ISGHTDS---RASDEYNMRLSERRANAVARVGNSIG---ARIIEVRGYGERDPRKPNNSA 172

Query: 328 N--SANRRIDIL 337
              + NRR++I+
Sbjct: 173 ANMAENRRVEII 184


>gi|329850857|ref|ZP_08265702.1| ompA family protein [Asticcacaulis biprosthecum C19]
 gi|328841172|gb|EGF90743.1| ompA family protein [Asticcacaulis biprosthecum C19]
          Length = 263

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 205 GLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             VA +  +    E  R+    IS    +    +   +   + ++  +L ++ +V+A   
Sbjct: 126 PAVAGDNARDAAIEVARSCDDRISAAMGKRRLEYRFGTYELIGDSEPLLDELSKVVADCP 185

Query: 264 --EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               + I G+TDA+     A+ N  +SL RA +A   L+K GV   RI ++ G       
Sbjct: 186 ADVKLIIAGYTDAT---GDAKANQLISLARAQTAADGLVKRGVDAGRI-QVQGMGGAAPV 241

Query: 322 IASDP--MNSANRRIDI 336
             +      +ANRRI I
Sbjct: 242 ADNATPEGRAANRRIVI 258


>gi|329944220|ref|ZP_08292479.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530950|gb|EGF57806.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 462

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     +   VL  + E +        ++I GHTD          N  LS  RA +
Sbjct: 180 FAVDSDQLSAQADSVLAGVVEQIKKYPSGGELTITGHTDDVA---DDAHNQDLSERRAKA 236

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
               L            +SG      ++ +D      ANRR+++ ++  +
Sbjct: 237 VSGRLKTLTDLSAWKEAVSGKGESSPRVPNDSEENKQANRRVEVTLKPSK 286


>gi|83312092|ref|YP_422356.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82946933|dbj|BAE51797.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 167

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         +   +L  +  +LA  ++  + I GH D +        N  +   RA +
Sbjct: 62  LFAAGRLDLDAKARQILDDVAGILAREASIPVIIEGHADDT---GTREYNLAIGERRAET 118

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             Q L+  GV  +RI  IS G    R    +    +ANRR+ + +E 
Sbjct: 119 VRQYLIGRGVDGERIRAISFGKERPRAPGRTKAARAANRRVVVRLEP 165


>gi|163793574|ref|ZP_02187549.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159181376|gb|EDP65891.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 293

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   ++  PE+   L  + E++       + I GHTD     ++   N  L+L RA   
Sbjct: 192 FEVGGNVLTPESQASLPTLLEIIRQRVLPGVEIAGHTDRVGASSV---NDALALRRAELV 248

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            Q+++  G+S  R+ ++  F      + +        NRR++I V
Sbjct: 249 QQMMLDLGIS-RRLIRVDSFGERDPVVPTADGVDEPRNRRVEITV 292


>gi|124002443|ref|ZP_01687296.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123992272|gb|EAY31640.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 756

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           ++   F+ +      + I  L+   + L  +    ++I GHTD             LS  
Sbjct: 648 QSVAFFEYNKYELKDKFIKNLEPFIKYLQKNKNAELAIYGHTDQVGTAAACLL---LSQR 704

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340
           RA +  Q  ++ GV+  RI+   G+   +    +   D     NRRI++L+ +
Sbjct: 705 RANAIKQYFVRHGVAAKRITA-KGYGKAKPIWKNEKHDWQAKENRRIELLLLE 756


>gi|284050116|ref|ZP_06380326.1| hypothetical protein AplaP_01445 [Arthrospira platensis str.
           Paraca]
          Length = 179

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++ ++       +     + +   ++  + + I  +   N   F+  S+   P+ + ++ 
Sbjct: 26  ISGQVRQMRDAQIIPAAFENIPGIKSVFSTLKIDPVRIENRIYFNSGSAQLNPQDLQIIT 85

Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           KI E L       + I GHTD    R  A  N +L+L+RA +    L K G+   R+  +
Sbjct: 86  KIQEFLDRYPQLSLRIIGHTD---LRGNAARNQQLALNRAIAVRDALTKQGIDPKRLEVV 142

Query: 313 SGFAHHRLK 321
               + +  
Sbjct: 143 ---GNSQPP 148


>gi|170696031|ref|ZP_02887168.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170139023|gb|EDT07214.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 646

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-----STEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F  SS+         L +   VL           + + G++D        + N +LS +R
Sbjct: 540 FGSSSARVPAAANEDLGQSARVLNACARNGRVAKLEVAGYSDNV---GGEQANLQLSKER 596

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           A +    L+K+GV  D + +  G+        +D  +    NRRI+
Sbjct: 597 AEAVRSYLVKAGVPGDSL-RAQGYGQAHPIAGNDTASGRFANRRIE 641


>gi|88705612|ref|ZP_01103322.1| conserved hypothetical protein, secreted [Congregibacter litoralis
           KT71]
 gi|88700125|gb|EAQ97234.1| conserved hypothetical protein, secreted [Congregibacter litoralis
           KT71]
          Length = 181

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  S+   P     +     +L  +   + + GHTD    R     N  L   RA +  
Sbjct: 83  FEFDSATLTPAAQAAVDAHIALLKTNDRSVRLDGHTDE---RGTRDYNMALGERRANAVR 139

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             ++ +GV+  RI  +S +   +     + +   S NRR+++
Sbjct: 140 DYMVVNGVASYRIETVS-YGEEQPVAYGSGESSWSQNRRVEL 180


>gi|328469328|gb|EGF40274.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus 10329]
          Length = 340

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L+       + I GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L+  GV+ + I ++           ++     + NRR+ +
Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311


>gi|240851216|ref|YP_002972619.1| peptidoglycan-associated lipoprotein [Bartonella grahamii as4aup]
 gi|240268339|gb|ACS51927.1| peptidoglycan-associated lipoprotein [Bartonella grahamii as4aup]
          Length = 173

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS    +   +L +  E L H     I I GH D    R     N  L   R
Sbjct: 63  DRVFFSLDSSSLDADAERILTRQAEWLLHYPYYSIMIEGHADE---RGTREYNLALGQRR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GVSE RI  IS +   R     D ++  + NRR
Sbjct: 120 AVAVRNYLVSLGVSEQRIQTIS-YGKERPVAVCDDISCWNQNRR 162


>gi|29423528|gb|AAO73590.1| lateral flagellar MotY-like protein [Vibrio parahaemolyticus]
          Length = 340

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L+       + I GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L+  GV+ + I ++           ++     + NRR+ +
Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311


>gi|28901394|ref|NP_801049.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153835953|ref|ZP_01988620.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus AQ3810]
 gi|260362948|ref|ZP_05775817.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus K5030]
 gi|260880235|ref|ZP_05892590.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus AN-5034]
 gi|260895352|ref|ZP_05903848.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus Peru-466]
 gi|28809941|dbj|BAC62882.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750707|gb|EDM61452.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus AQ3810]
 gi|308085759|gb|EFO35454.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus Peru-466]
 gi|308091961|gb|EFO41656.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus AN-5034]
 gi|308112265|gb|EFO49805.1| putative sodium-type flagellar protein MotY [Vibrio
           parahaemolyticus K5030]
          Length = 340

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L+       + I GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L+  GV+ + I ++           ++     + NRR+ +
Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311


>gi|49081460|gb|AAT50132.1| PA0973 [synthetic construct]
          Length = 169

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 69  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      +    D  + + NRR+++
Sbjct: 126 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166


>gi|294636572|ref|ZP_06714935.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
 gi|291090190|gb|EFE22751.1| OmpA family protein [Edwardsiella tarda ATCC 23685]
          Length = 162

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
              +F  +  +  PE+   + +IG  L+        + G+TD   +   A  N +LSL R
Sbjct: 55  EKVLFGNNQFVLRPESQAHVAEIGRALSKVAILHARLDGYTDN--YGTDAY-NQQLSLKR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           A      L   G+    ++   G         +      + NRR+ I+++
Sbjct: 112 ADKVADALASGGMPRANLT-TRGMGKRDPIADNATRQGRAENRRVAIIIQ 160


>gi|254460338|ref|ZP_05073754.1| OmpA domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206676927|gb|EDZ41414.1| OmpA domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 594

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 76/265 (28%), Gaps = 9/265 (3%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +  + +         +       +        +  T       R  +   Y ++      
Sbjct: 301 VIPDASQGPPEFIATLSPEGQVQLRGRVNSKLVRDTADSYAKARFGSGEVYTASRIDESL 360

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            ++   R     + L    +   ++  E+             +   +  L+ L      +
Sbjct: 361 PRDWSVRVLAAIETLSMLKNGSVTVTPEKVRVFGDTGVPSAKSDITRLLLEKLGDSKDLS 420

Query: 203 LSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           +       +   +   T     + ++ I       F+  S         +L  + E+L  
Sbjct: 421 IEVTYKKKLDPVLGLPTADECEVQVTEIQSGRKITFEPGSGNLDASAESILDDMAEILIK 480

Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             +   + I G+TD+         N  LS  RA +    L +  V   R     G+    
Sbjct: 481 CPDDMRMEISGYTDSQ---GREVMNQELSQTRAQAVLTALRERRVLMSRYVA-KGYGEEN 536

Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342
                +++    ANRRI+  +   +
Sbjct: 537 PIGDNSTEAGREANRRIEFKLIRPE 561


>gi|15596170|ref|NP_249664.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa PAO1]
 gi|107100429|ref|ZP_01364347.1| hypothetical protein PaerPA_01001454 [Pseudomonas aeruginosa PACS2]
 gi|116048898|ref|YP_792301.1| peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218893056|ref|YP_002441925.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa LESB58]
 gi|254239321|ref|ZP_04932644.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa C3719]
 gi|254245256|ref|ZP_04938578.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa 2192]
 gi|296390668|ref|ZP_06880143.1| peptidoglycan-associated lipoprotein [Pseudomonas aeruginosa PAb1]
 gi|81622520|sp|Q9I4Z4|PAL_PSEAE RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|9946880|gb|AAG04362.1|AE004530_15 Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa PAO1]
 gi|115584119|gb|ABJ10134.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126171252|gb|EAZ56763.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa C3719]
 gi|126198634|gb|EAZ62697.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa 2192]
 gi|218773284|emb|CAW29096.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa LESB58]
          Length = 168

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 69  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      +    D  + + NRR+++
Sbjct: 126 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166


>gi|300114482|ref|YP_003761057.1| chemotaxis protein MotB-like protein [Nitrosococcus watsonii C-113]
 gi|299540419|gb|ADJ28736.1| chemotaxis protein MotB-related protein [Nitrosococcus watsonii
           C-113]
          Length = 250

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 46/199 (23%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQ------ 231
           + A+     L    KKI   +  L        +I+  +  E  +  I I I D       
Sbjct: 35  LAAVALIIELTQTQKKIEQDIDQLKNAEQARRDILHEIRDELAKRNIKILIADNDTVLRI 94

Query: 232 -RNTPMFDKSSSIP--LPETIVVLQKIGEVLAHSTEV-----------------ISIRGH 271
             +T  F  +S       +    +  IG+VL  +                    + I GH
Sbjct: 95  PESTLAFASNSYALPADEKVRSSVVAIGQVLHAAINRSFKPGVSEKRRFDYLDTVFIEGH 154

Query: 272 TDASPFRNIARDNWRLSLDRAYS----------AYQVLMK-SGVSEDRISKISGFAHHRL 320
           TD+ P + I + NW LS  RA S             VL   S    D++  +SG+A  R 
Sbjct: 155 TDSRPTKRI-KGNWGLSTFRAISLWEYWDDVLDVSPVLTDMSNAFGDKLFSVSGYAATRR 213

Query: 321 KIASD---PMNSANRRIDI 336
              ++        NRRIDI
Sbjct: 214 VNEAEITREDRRENRRIDI 232


>gi|262403725|ref|ZP_06080283.1| protein F-related protein [Vibrio sp. RC586]
 gi|262350229|gb|EEY99364.1| protein F-related protein [Vibrio sp. RC586]
          Length = 199

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      R N +LS  RA + 
Sbjct: 94  FETGSAKVSASSKRWLDSMARFLASESGIDIVLEGHTDNT---GAERFNDKLSERRASAV 150

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             VL++S V+++ I    GF        +      + NRR+++
Sbjct: 151 KTVLVQSRVAQNAIY-TRGFGESVPACTNSTVKGRACNRRVEV 192


>gi|322420089|ref|YP_004199312.1| hypothetical protein GM18_2585 [Geobacter sp. M18]
 gi|320126476|gb|ADW14036.1| conserved repeat domain protein [Geobacter sp. M18]
          Length = 1890

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    S+   E   +L     VL     E + + GHTD      +   N  LS  R  +A
Sbjct: 1620 FIFDKSVLTTEAKRLLSGAARVLRERPRERVILEGHTDG--IGTVEY-NMALSKRRCDAA 1676

Query: 296  YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             + L++  GV+  R+ +   +   R    +   +    NRR+++
Sbjct: 1677 AEYLIRVEGVAPSRLLR-RWYGKSRPVADNVTTSGRRLNRRVEL 1719


>gi|148976136|ref|ZP_01812879.1| outer membrane protein [Vibrionales bacterium SWAT-3]
 gi|145964531|gb|EDK29785.1| outer membrane protein [Vibrionales bacterium SWAT-3]
          Length = 277

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 19/211 (9%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + ++I K+            + A      ++KRL +L  +
Sbjct: 66  AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELELQ 125

Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +    S        +     +     +    +  +D +    F  +S    P+ +  L +
Sbjct: 126 LDYVTSQARCEPPKNENQFRMQLSIIQQLYDLLNVDNQ----FAHNSIEVNPKYMGKLAE 181

Query: 255 IGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              +L  + +  + + GH+DA+        N +L+L RA    + L   G+S  RI  +S
Sbjct: 182 ASYILKDNKSLELIVTGHSDAT---GSEEYNDKLALGRAQQVERYLTIFGLSPSRIKAVS 238

Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
                      +   +   NRR+ I V   +
Sbjct: 239 -VGETVPLFEGESEGTRLTNRRVSIEVISPE 268


>gi|222823912|ref|YP_002575486.1| chemotaxis protein MotB, [Campylobacter lari RM2100]
 gi|222539134|gb|ACM64235.1| chemotaxis protein MotB, putative [Campylobacter lari RM2100]
          Length = 316

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 113/317 (35%), Gaps = 47/317 (14%)

Query: 33  WKIVYADFMTVLMAFFLVM-------WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
           W I YAD M  L+  F+++       +++  +D    K                     +
Sbjct: 14  W-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLQIIKE--------------------N 52

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
            Q   ER  +NK +L+  E I KN       +++      + +  +         +   +
Sbjct: 53  LQKQEERLRENKEELNQKEDILKNLSQKLNNTSSTLDDVNKQKQALEANITKLNQDLNSS 112

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-- 203
              +D +    L +    ++ I + E+ F    SK K L + ++  +++L  K  + +  
Sbjct: 113 LDEKDQQIFALLERLNKKDEEIKELESNFEEAKSKIKELGLIKENTIKNLQAKFDTNITL 172

Query: 204 -SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
            S   A  +   VLF+T    +     +   T +              +L+    +L   
Sbjct: 173 DSNTGAIVLPSEVLFDTNSFTLKAQAKENLKTIL--------TQYFDNILKDE-NILNSI 223

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKISGFAHHRL 320
              I I GHTD+         N  LS  RAY+    +          ++   SG ++  +
Sbjct: 224 EN-IVIEGHTDS---AGSYIYNLDLSQKRAYAVMSFIHSFYKDPRLQKLLMASGRSYSDV 279

Query: 321 KIASDPMN-SANRRIDI 336
                  +  A+RRI+I
Sbjct: 280 ITKDGKEDKEASRRIEI 296


>gi|254473105|ref|ZP_05086503.1| OmpA/MotB [Pseudovibrio sp. JE062]
 gi|211957826|gb|EEA93028.1| OmpA/MotB [Pseudovibrio sp. JE062]
          Length = 160

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F  + S        VL K  + L H     I+I GH D    R   + N  L   R
Sbjct: 53  DRVFFLNNQSSLDGAARGVLDKQAQWLQHYKNYSITIEGHADE---RGTRQYNIALGARR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           A +  + L+  G+S  RI  IS +   R     +  +  S NRR  + V + Q
Sbjct: 110 AAAVREYLVAKGISPSRIKTIS-YGKERPVAVCNAASCWSQNRR-AVTVLNGQ 160


>gi|260752248|ref|YP_003225141.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551611|gb|ACV74557.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 366

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD       PE   +L  +    + + +  + + G+TD       A+ N  LS  RA S
Sbjct: 259 FFDFDKYNITPEAASILDNVASSYSQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 315

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L+  GV +D +     +    L + +        NRR++I
Sbjct: 316 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 358


>gi|218679284|ref|ZP_03527181.1| flagellar motor protein MotB [Rhizobium etli CIAT 894]
          Length = 200

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 72/182 (39%), Gaps = 2/182 (1%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F      + TA K     ++  + +     +++  E +    +     +  Q+    +  
Sbjct: 19  FWTKQVEVTTAGKSAPPGKSDQQAAESGTTEIAKVEDMKPIPLTTDQKAVAQETTETKET 78

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMK 187
                 + ++  +   +    D + G          +K+ + +++      + +     +
Sbjct: 79  TETKGAAEAKDGKAPGDKKADDKKAGDKKTGDKKAGDKNADAQKDADHQKDADKSAAEAQ 138

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            +K+ + L  +I+  + G VA  + +G+    +  G+L+SI DQ +  MF+  S++P  E
Sbjct: 139 EQKQAEQLQAEIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQE 197

Query: 248 TI 249
            +
Sbjct: 198 MV 199


>gi|104783066|ref|YP_609564.1| peptidoglycan-associated lipoprotein [Pseudomonas entomophila L48]
 gi|95112053|emb|CAK16780.1| peptidoglycan-associated lipoprotein precursor [Pseudomonas
           entomophila L48]
          Length = 165

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRSLDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163


>gi|304410057|ref|ZP_07391676.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307302230|ref|ZP_07581988.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304351466|gb|EFM15865.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306914268|gb|EFN44689.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 196

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +         L  +   LA +   +++ GHTD          N++LSL RA +  
Sbjct: 93  FEFAIAEVDFSQWKTLALVKAYLAANDVALTLVGHTD---IVGTPEFNYQLSLQRAQNVK 149

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           ++L++  G + +R + + G         +      S NRR+  +V ++
Sbjct: 150 RILVEDYGFNPNRFT-VMGKGISEPVADNRSSEGRSLNRRVQFIVNNK 196


>gi|317153134|ref|YP_004121182.1| peptidoglycan-associated lipoprotein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943385|gb|ADU62436.1| peptidoglycan-associated lipoprotein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 183

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            K++    PP ++ ++    + K     +    +TL+           + E T     ++
Sbjct: 24  AKKKTTTTPPGAQVEVTDESQWKSSSSDSSMDEATLASEAERRAKTEAVTELTS----VT 79

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWR 286
           I        F   S     E   +L     ++   +   + + GH D    R     N  
Sbjct: 80  IN-------FAFDSYELNSEARSILALKANIMRRYTDVRVVVEGHCDE---RGTEEYNLA 129

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           L   RA +AY+ L+  GV   R+S +S F   +   +  ++   + NRR + +V
Sbjct: 130 LGERRARAAYEHLVILGVDPGRMSIVS-FGEEKPLDSAHNETAWAKNRRAEFVV 182


>gi|254492390|ref|ZP_05105562.1| OmpA family protein [Methylophaga thiooxidans DMS010]
 gi|224462282|gb|EEF78559.1| OmpA family protein [Methylophaga thiooxydans DMS010]
          Length = 281

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   +   P     L ++ E +    S   I I  HTD        R N  LS  RA S
Sbjct: 177 FEIEQATLTPVAKKALTRLAEYVKVDDSINQIKIASHTDN---HGRRRLNEPLSDARALS 233

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             + L+      +++  I+ +   +   ++      + NRR +I +  
Sbjct: 234 IKRFLITEFEIPEQLISINSYVEAKPTASNKTPLGRAKNRRAEITLVR 281


>gi|254453865|ref|ZP_05067302.1| OmpA domain protein [Octadecabacter antarcticus 238]
 gi|198268271|gb|EDY92541.1| OmpA domain protein [Octadecabacter antarcticus 238]
          Length = 311

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+         LQ + + L  + +  +++ GHTD   F      N  LS  RA S 
Sbjct: 206 FETGSAQLGDAIFGSLQYLADYLIANPDRTVALVGHTD---FFGSLDGNIALSKRRAGSV 262

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
            + L+ +           G  +     ++  +    ANRR+++++   Q
Sbjct: 263 LERLVTTYDIPRHQLDAQGMGYLSPVASNLTEEGREANRRVEVIITSTQ 311


>gi|313105860|ref|ZP_07792123.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa 39016]
 gi|310878625|gb|EFQ37219.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa 39016]
          Length = 169

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 70  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 126

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      +    D  + + NRR+++
Sbjct: 127 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 167


>gi|157373855|ref|YP_001472455.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157316229|gb|ABV35327.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 226

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++      TR+G  I +    N   F    +        VL  +  V     +  +++ G
Sbjct: 96  LQSTGVSVTRSGDNIVLN-MPNEVTFGVDQTDLSSGAKRVLNSVALVAKEYDQTQLNVLG 154

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328
           +TD+         N RLS  RA      L+   +   R+    G    R     A+    
Sbjct: 155 YTDS---SGAESYNLRLSKIRAIEVGNYLVAQKIEYGRVKS-EGLGESRPIATNATAEGR 210

Query: 329 SANRRIDILV 338
           + NRR++I++
Sbjct: 211 AQNRRVEIVL 220


>gi|163732848|ref|ZP_02140293.1| OmpA domain protein [Roseobacter litoralis Och 149]
 gi|161394208|gb|EDQ18532.1| OmpA domain protein [Roseobacter litoralis Och 149]
          Length = 176

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+      +  + +I +VL       + ++GHTD+     + R    LS  RA S 
Sbjct: 48  FEPGSATIDAAALTTMDQIADVLRVCGDLKLEVQGHTDSQGREEMNRS---LSQARAQSV 104

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342
              L    V         G+        +D      ANRRI+  +   +
Sbjct: 105 LNELRARKVLTSNFIA-KGYGEANPIADNDTEEGREANRRIEFKLIRPE 152


>gi|303325524|ref|ZP_07355967.1| OmpA family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863440|gb|EFL86371.1| OmpA family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 332

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S     + + +L +   ++  +    + + G TD   +      N  LS +RA + 
Sbjct: 232 FAFNSYALDGKAMGILNEAASLIKANPNKRVILNGWTD---WIGTDAYNKVLSQNRANAV 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L K G+   R++ I      +    ++     NRR +I
Sbjct: 289 KNYLEKQGIPASRMTAIGRGKSFKYDNKTEEGRYMNRRTEI 329


>gi|113474200|ref|YP_720261.1| OmpA/MotB [Trichodesmium erythraeum IMS101]
 gi|110165248|gb|ABG49788.1| OmpA/MotB [Trichodesmium erythraeum IMS101]
          Length = 246

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 10/249 (4%)

Query: 98  IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157
           I         K  +  K+ +  + +  ++    +     +   E  K  +     + + +
Sbjct: 3   IAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLT--EAEKI 60

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGLVADNIVKGVL 216
              T+L++   + +   +   + E  L + R    L+     I+  L+   + N  K   
Sbjct: 61  ELETELKQLQAQLKTLIVRTTAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRN 120

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDAS 275
             ++       ++   +  +F+  S+    +  V++   I E+  +   +IS+ G+TD  
Sbjct: 121 QYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLIRELRNYQDVIISVSGYTDN- 179

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
             R  A+ N   S  +A    + L K      R+  I G+   R    +D       NRR
Sbjct: 180 --RGKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAI-GYGESRPIAENDSQTNRQRNRR 236

Query: 334 IDILVEDRQ 342
           I++ V  R+
Sbjct: 237 IEVKVHLRK 245


>gi|317153138|ref|YP_004121186.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943389|gb|ADU62440.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 244

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            ++S ++ +           I  +  +       + +    + ++  +   GV       
Sbjct: 63  SQQSADEAQAASALDPLIGLIGQLSSRAGANGSQETVRVADNQVLFRSRTDGVTVVREGQ 122

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT--DASPFRNI 280
           G  I +   R    F  + +   PE+   L +I EV+  S   + + G+   D       
Sbjct: 123 G-RIRVT-LRGDLFFAVNEAGLAPESGQYLSEIAEVVRLSVGTVHVIGYASEDEGGNEAG 180

Query: 281 ARDNWRLSLDRAYSAY-QVLMKSGVSEDRISKISGFA--HHRLKIASDPMNSANRRIDIL 337
            R  + LS  RA     Q++ +  V   R+  I+G    H  L   +    + NRR++I+
Sbjct: 181 TRQGFALSTGRATEVADQLMTRFKVDPRRVV-ITGRGRLHPELPGTTPANQAMNRRVEIV 239

Query: 338 VED 340
           + +
Sbjct: 240 ITN 242



 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 56/197 (28%), Gaps = 4/197 (2%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86
            +   +W + +AD M V+   F+V++I ++T  D K      F+    +   A+  +   
Sbjct: 24  ASGANAWAVPWADLMMVMFVLFVVLFIYSSTHQDVKV----LFSQQSADEAQAASALDPL 79

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
                + S         E +      +   S        R       ++         N 
Sbjct: 80  IGLIGQLSSRAGANGSQETVRVADNQVLFRSRTDGVTVVREGQGRIRVTLRGDLFFAVNE 139

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
                E G+ L +  ++ +      +        E       ++       + +     L
Sbjct: 140 AGLAPESGQYLSEIAEVVRLSVGTVHVIGYASEDEGGNEAGTRQGFALSTGRATEVADQL 199

Query: 207 VADNIVKGVLFETTRTG 223
           +    V       T  G
Sbjct: 200 MTRFKVDPRRVVITGRG 216


>gi|146338950|ref|YP_001203998.1| putative outer membrane protein [Bradyrhizobium sp. ORS278]
 gi|146191756|emb|CAL75761.1| conserved hypothetical protein; putative outer membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 198

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292
           FD +S+     ++  +Q++G+ L+           + GHTD          N  LS  RA
Sbjct: 88  FDYNSAEISKGSMQAVQELGKALSD-PNLKGSTFVVAGHTDGI---GSDGFNQDLSERRA 143

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            +  + L++  G+    +  + G+   +LK A++P +  NRR+ ++  D +
Sbjct: 144 DTIKRYLVEKYGLVGQDLVAV-GYGKTKLKDAANPADPLNRRVQVVNMDTK 193


>gi|308049357|ref|YP_003912923.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307631547|gb|ADN75849.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 354

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   SS    +   +   I  +L +    + I+G  D++     ++ N  LS  RA +  
Sbjct: 249 FGFDSSELT-DLSPLSDIIERLLRYPDAQVFIQGFADST---GRSQYNLSLSHRRAQAVA 304

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             L   GV  DRI +I  F      I +      + NRR+ + +
Sbjct: 305 DYLQSQGVEPDRI-RIEDFGERLPVIDNATAEHRAQNRRVHLYI 347


>gi|306820525|ref|ZP_07454158.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551439|gb|EFM39397.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 437

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD +      +   VL K+ +VL      I    I GHTD+    +    N  LS +RA
Sbjct: 334 LFDVNKYNIRADANDVLMKLIDVLKK--GKIQKFEIYGHTDSD---DTDEYNQVLSENRA 388

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            S    L+K+G++ D      GF   +    +        NRR++I++
Sbjct: 389 NSVKDFLVKNGITAD--ITTKGFGEKKPIATNSTKEGKQLNRRVEIII 434


>gi|298292993|ref|YP_003694932.1| peptidoglycan-associated lipoprotein [Starkeya novella DSM 506]
 gi|296929504|gb|ADH90313.1| peptidoglycan-associated lipoprotein [Starkeya novella DSM 506]
          Length = 164

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   +   P+    L K  + L H      +I GH D    R     N  L   R
Sbjct: 55  DRVFFDSDQTDLTPQAQATLDKQAQWLNHYGKYTFTIEGHADE---RGTREYNIALGARR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A S    L++ GVS  R+  IS +   R     + ++  S NRR  + V +  G
Sbjct: 112 AQSVRDYLVQRGVSASRMRTIS-YGKERPVAVCNDISCWSQNRR-AVTVLNATG 163


>gi|117618280|ref|YP_855820.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559687|gb|ABK36635.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 351

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    +   PE +  L+ + + +A          + G+TD         +N  LS  RA
Sbjct: 223 LFAFGKAELKPEGMQALESLYQQIADVKPKDGNAVVMGYTDRI---GSDANNQALSEARA 279

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G+  D++  I G         S  D + +          +RR+++ V   
Sbjct: 280 STVANFLIGKGLPADKV-SIQGNGESNPVTGSQCDAIKARAALIDCLAPDRRVEVRVTGT 338

Query: 342 QG 343
           QG
Sbjct: 339 QG 340


>gi|308050234|ref|YP_003913800.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632424|gb|ADN76726.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 204

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  S+   P ++ ++Q +G+ L     + +   I GHTDA         N  LSL RA 
Sbjct: 94  FDSGSARLRPSSLALVQTLGDALTDPRFNGQAFLIAGHTDA---DGDEEYNLGLSLRRAN 150

Query: 294 SAY-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +    +L  + ++ D++ K+ GF       ++        NRR+++
Sbjct: 151 TVRDYLLQHTSLTPDQL-KVVGFGETTPLASNHERQGKQQNRRVEV 195


>gi|126175214|ref|YP_001051363.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|153001540|ref|YP_001367221.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|160876276|ref|YP_001555592.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|217972531|ref|YP_002357282.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|125998419|gb|ABN62494.1| OmpA/MotB domain protein [Shewanella baltica OS155]
 gi|151366158|gb|ABS09158.1| OmpA/MotB domain protein [Shewanella baltica OS185]
 gi|160861798|gb|ABX50332.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|217497666|gb|ACK45859.1| OmpA/MotB domain protein [Shewanella baltica OS223]
 gi|315268465|gb|ADT95318.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 196

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + +         L  +   LA +   +++ GHTD          N++LSL RA +  
Sbjct: 93  FEFAIAEVDFSQWKTLALVKAYLAANDVALTLVGHTD---IVGTPEFNYQLSLQRAQNVK 149

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           ++L++  G + +R + + G         +      S NRR+  +V ++
Sbjct: 150 RILVEDYGFNPNRFT-VMGKGISEPVADNRSSEGRSLNRRVQFIVNNK 196


>gi|170727083|ref|YP_001761109.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169812430|gb|ACA87014.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 289

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                       + K+ E L++  EV  + I  +TD+   R+I   N ++S +RA S  +
Sbjct: 187 GGKELTRYAKAQIAKVQEYLSYDPEVELVLIDAYTDSYGGRSI---NQKISEERADSVKE 243

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             + +G++++RI  + G        ++      + NRR+ I +
Sbjct: 244 FFISAGITQERIHTV-GHGERHHVASNATIDERARNRRVVIRI 285


>gi|166714360|gb|ABY87946.1| outer membrane protein [Acinetobacter sp. wpo2421]
          Length = 319

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S   P+    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 233 RVFFDTNKSDIKPQYKSEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 289

Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKI 322
            S    L+ +  V   R+    GFA  +   
Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIA 319


>gi|260063550|ref|YP_003196630.1| OmpA family protein [Robiginitalea biformata HTCC2501]
 gi|88782994|gb|EAR14168.1| OmpA family protein [Robiginitalea biformata HTCC2501]
          Length = 652

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+  + +QK+   +       I    HTD+   R     N  LS  RA S 
Sbjct: 545 FDFDKANIRPDAEIEIQKVIAAMEKYPSLRIKANSHTDS---RGPDAYNLALSQRRADST 601

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVED 340
            + ++  G++ +R+    GF   RL    D            NRR + ++ +
Sbjct: 602 VRYMISKGIAPERLEG-EGFGESRLINRCDDGVPCSAQEHELNRRSEFIILE 652


>gi|83954367|ref|ZP_00963087.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841404|gb|EAP80574.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 665

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTP 235
           P  + +   +  ++  + L   + + L G  A       + +  +   +   I  + +  
Sbjct: 496 PQVRPQANTLASQQNEEALRAALQTQLRGDQAQRYSLRQVRDVRQVRALAPEI--ELDAV 553

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLD 290
            F   S+   PE    L KIG  ++++ +     VI + GHTDA    N    N  LS  
Sbjct: 554 RFATGSAAIQPEQARALSKIGTAISNAIKDDPRTVILVEGHTDA--VGNAGY-NLALSDR 610

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           RA +    L +   V    +    G+    LK+ ++    ANRR
Sbjct: 611 RAETVALALTEYFDVPPANLI-TQGYGESALKVPTETAEPANRR 653


>gi|262190496|ref|ZP_06048743.1| protein F-related protein [Vibrio cholerae CT 5369-93]
 gi|262033626|gb|EEY52117.1| protein F-related protein [Vibrio cholerae CT 5369-93]
          Length = 204

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|229513150|ref|ZP_04402615.1| protein F-related protein [Vibrio cholerae TMA 21]
 gi|229349560|gb|EEO14515.1| protein F-related protein [Vibrio cholerae TMA 21]
          Length = 204

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|153829691|ref|ZP_01982358.1| OmpA family protein [Vibrio cholerae 623-39]
 gi|148874812|gb|EDL72947.1| OmpA family protein [Vibrio cholerae 623-39]
          Length = 207

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200


>gi|15601417|ref|NP_233048.1| protein F-related protein [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153211953|ref|ZP_01947800.1| OmpA family protein [Vibrio cholerae 1587]
 gi|153800869|ref|ZP_01955455.1| OmpA family protein [Vibrio cholerae MZO-3]
 gi|153818096|ref|ZP_01970763.1| OmpA family protein [Vibrio cholerae NCTC 8457]
 gi|153824386|ref|ZP_01977053.1| OmpA family protein [Vibrio cholerae MZO-2]
 gi|227812226|ref|YP_002812236.1| protein F-related protein [Vibrio cholerae M66-2]
 gi|254285685|ref|ZP_04960648.1| OmpA family protein [Vibrio cholerae AM-19226]
 gi|254849820|ref|ZP_05239170.1| OmpA family protein [Vibrio cholerae MO10]
 gi|298499464|ref|ZP_07009270.1| OmpA family protein [Vibrio cholerae MAK 757]
 gi|9658075|gb|AAF96560.1| protein F-related protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|124117029|gb|EAY35849.1| OmpA family protein [Vibrio cholerae 1587]
 gi|124123579|gb|EAY42322.1| OmpA family protein [Vibrio cholerae MZO-3]
 gi|126511364|gb|EAZ73958.1| OmpA family protein [Vibrio cholerae NCTC 8457]
 gi|149741940|gb|EDM55969.1| OmpA family protein [Vibrio cholerae MZO-2]
 gi|150424182|gb|EDN16120.1| OmpA family protein [Vibrio cholerae AM-19226]
 gi|227011368|gb|ACP07579.1| protein F-related protein [Vibrio cholerae M66-2]
 gi|254845525|gb|EET23939.1| OmpA family protein [Vibrio cholerae MO10]
 gi|297541445|gb|EFH77496.1| OmpA family protein [Vibrio cholerae MAK 757]
          Length = 207

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200


>gi|121585594|ref|ZP_01675390.1| protein F-related protein [Vibrio cholerae 2740-80]
 gi|229506176|ref|ZP_04395685.1| protein F-related protein [Vibrio cholerae BX 330286]
 gi|229509966|ref|ZP_04399446.1| protein F-related protein [Vibrio cholerae B33]
 gi|229516473|ref|ZP_04405920.1| protein F-related protein [Vibrio cholerae RC9]
 gi|229605715|ref|YP_002876419.1| protein F-related protein [Vibrio cholerae MJ-1236]
 gi|255746568|ref|ZP_05420515.1| protein F-related protein [Vibrio cholera CIRS 101]
 gi|262158841|ref|ZP_06029954.1| protein F-related protein [Vibrio cholerae INDRE 91/1]
 gi|121550211|gb|EAX60225.1| protein F-related protein [Vibrio cholerae 2740-80]
 gi|229346354|gb|EEO11325.1| protein F-related protein [Vibrio cholerae RC9]
 gi|229352411|gb|EEO17351.1| protein F-related protein [Vibrio cholerae B33]
 gi|229356527|gb|EEO21445.1| protein F-related protein [Vibrio cholerae BX 330286]
 gi|229372201|gb|ACQ62623.1| protein F-related protein [Vibrio cholerae MJ-1236]
 gi|255736322|gb|EET91720.1| protein F-related protein [Vibrio cholera CIRS 101]
 gi|262029414|gb|EEY48065.1| protein F-related protein [Vibrio cholerae INDRE 91/1]
          Length = 204

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|323136170|ref|ZP_08071252.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322398244|gb|EFY00764.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 288

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 47/239 (19%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
           F+ S  +  +           + +D  +    E     +     P  +    +A +R++ 
Sbjct: 37  FFASQFRDPDKVSRKEYESIVRERDKLEKEVRELREQLKRLANRPVETYLAAVANQRERI 96

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L+DL  K+ +    L        V+       +       +   +F   SS   P+   +
Sbjct: 97  LKDLQSKLKADFPDL-------QVVISEEMDALRF-----KGDGLFKTGSSELRPDKRRI 144

Query: 252 LQKIGEVLAH----------------------STEVISIRGHTDASPFRNIARDNWRLSL 289
           ++ I   L                          E + + GHTD+         N  LS 
Sbjct: 145 VESIATRLGEVLPCYTLGPRSSWNSRCNAAGAVIEAVLVEGHTDS---DGQDNSNITLST 201

Query: 290 DRAYSAYQVLMKS-----GVSEDR---ISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           +RA   +  + K          DR   +  ++G+   R    +      + NRRID+ +
Sbjct: 202 NRANETFFAMTKHEPALVDFRNDRAQPVLSVAGYGRMRPVADNATQEGKATNRRIDLRI 260


>gi|326794029|ref|YP_004311849.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326544793|gb|ADZ90013.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 272

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETI 249
           L+ L ++I +   GLV  +     L E     +  ++ ++++ +   F  +S+       
Sbjct: 99  LRALDQQIENAEKGLVFLHARTTCLGEAHDDVLADILPLLERISRTNFASASAAMPDAMP 158

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L ++ + L  +    +++ GHTD+        +N  L+LDRA +  + L+   V   +
Sbjct: 159 PLLDELAKWLILNPHYKVTLVGHTDSQ---GSIEENEHLALDRAATISRYLIAHNVDAHQ 215

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           + + +G         +    S   NRR+++
Sbjct: 216 L-RCNGEGPWNPISHNASEQSRKYNRRVEV 244


>gi|293396726|ref|ZP_06641002.1| outer membrane protein A [Serratia odorifera DSM 4582]
 gi|291420990|gb|EFE94243.1| outer membrane protein A [Serratia odorifera DSM 4582]
          Length = 364

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+   S   PE    L ++   L+        + + G+TD  P       N +LS
Sbjct: 235 KSDVLFNFGKSSLKPEGQQALDQLYTQLSSMDPKDGSVVVLGYTD--PV-GKDAANQKLS 291

Query: 289 LDRAYSAYQVLMKSGVSEDRIS--------KIS---GFAHHRLKIASDPMNSANRRIDIL 337
             RA S    L+  G+  D+IS        +++   G+ + R   A     + NRR++I 
Sbjct: 292 EARARSVVDYLVSKGIPADKISARGMGEADQVTDSCGYKNGRATKAQIECLAPNRRVEIE 351

Query: 338 VE 339
           V+
Sbjct: 352 VK 353


>gi|189353747|ref|YP_001949374.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
 gi|189337769|dbj|BAG46838.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
          Length = 266

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F KSS    LP     L   I ++ A   T  I + GHTD          N  LS  RA 
Sbjct: 154 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDESNRALSRARAE 210

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338
           +  + L+  G+   RI +  G    +      P  S         +RR+ I V
Sbjct: 211 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 262


>gi|332663673|ref|YP_004446461.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332332487|gb|AEE49588.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 846

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
               PE+   L  + +++    E VI +  HTD   +R     N  LS  RA SA + L+
Sbjct: 554 DKITPESEPDLNLVLDLMKKYPEMVIELSSHTD---YRGRDEYNQDLSQRRAESARKWLL 610

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           + G++  RI +  G+   + K  ++ M S 
Sbjct: 611 QKGIASSRI-QAKGYGEAQPKPVNEKMASE 639


>gi|312882154|ref|ZP_07741903.1| hypothetical protein VIBC2010_06184 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370200|gb|EFP97703.1| hypothetical protein VIBC2010_06184 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 215

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S         L ++ E L +    I+I GHTD    +     N  L L RA +A 
Sbjct: 106 FGFDQSNLTAMGRDALSQLAESLKNEDSAIAIEGHTDN---KGSEGYNQALGLRRALAAS 162

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
             L+  GV  +RI  +  +  +      +++   + NRR +I
Sbjct: 163 GALLTEGVDANRIV-VRSYGENLPIATNSTEEGRAQNRRSEI 203


>gi|152986859|ref|YP_001349884.1| peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa PA7]
 gi|150962017|gb|ABR84042.1| peptidoglycan associated lipoprotein OprL [Pseudomonas aeruginosa
           PA7]
          Length = 169

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 70  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 126

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      +    D  + + NRR+++
Sbjct: 127 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 167


>gi|187921498|ref|YP_001890530.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187719936|gb|ACD21159.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 371

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+   +  LP     L ++   L  + +V  ISI G+TD          N +LS  RA 
Sbjct: 237 FDRGDLAGMLPAGKAKLDELIRSLKQADDVTGISIDGYTDRL---GSDSYNRQLSAKRAE 293

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRIDI 336
           +  + L   GVS   +    G       +  +D   +A       NRR+++
Sbjct: 294 TVKRYLQSGGVSP--VISTRGHGKEDPVVQCNDHNRAALIACLAPNRRVEL 342


>gi|330445542|ref|ZP_08309194.1| peptidoglycan-associated lipoprotein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489733|dbj|GAA03691.1| peptidoglycan-associated lipoprotein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 180

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T  F   +S   PE   +L+     L       + + GH D    R     N  L   RA
Sbjct: 77  TVFFKFDNSEIQPEYQAMLEAHAAYLRDHPSVKVIVEGHADE---RGTPEYNIALGERRA 133

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            +  Q L   GV   ++S +S +   +  +   +D   + NRR
Sbjct: 134 TAVAQYLQALGVPASQLSIVS-YGEEKPLVLGHTDADYAKNRR 175


>gi|315608144|ref|ZP_07883136.1| lipoprotein PG3 [Prevotella buccae ATCC 33574]
 gi|315250113|gb|EFU30110.1| lipoprotein PG3 [Prevotella buccae ATCC 33574]
          Length = 238

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +  + K++   +S    + +           G+    +   +  +F  + S     +   
Sbjct: 86  MDKVKKEVEQQVSNAKVEEVTDA-------NGLKAVKVTFDSGLLFPLNKSTLSASSKTE 138

Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K   VL +     + I+G+TD +      + N  LS  RA S    L K GV      
Sbjct: 139 LAKFATVLKNDPQLAVDIQGYTDRT---GGDKINIPLSQSRAESVASYLRKQGVGSSSFK 195

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++GF     +I +  ++  NRR+++ +   Q
Sbjct: 196 NVTGFG-SANEIENAAVSQVNRRVEVYLYASQ 226


>gi|288925106|ref|ZP_06419042.1| lipoprotein PG3 [Prevotella buccae D17]
 gi|288338296|gb|EFC76646.1| lipoprotein PG3 [Prevotella buccae D17]
          Length = 238

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           +  + K++   +S    + +           G+    +   +  +F  + S     +   
Sbjct: 86  MDKVKKEVEQQVSNAKVEEVTDA-------NGLKAVKVTFDSGLLFPLNKSTLSASSKTE 138

Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L K   VL +     + I+G+TD +      + N  LS  RA S    L K GV      
Sbjct: 139 LAKFATVLKNDPQLAVDIQGYTDRT---GGDKINIPLSQSRAESVASYLRKQGVGSSSFK 195

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            ++GF     +I +  ++  NRR+++ +   Q
Sbjct: 196 NVTGFG-SANEIENAAISQVNRRVEVYLYASQ 226


>gi|282879247|ref|ZP_06287997.1| OmpA family protein [Prevotella buccalis ATCC 35310]
 gi|281298640|gb|EFA91059.1| OmpA family protein [Prevotella buccalis ATCC 35310]
          Length = 703

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I++    +   +D   +   PE+   L ++ ++L  +  V I +  H D   ++     N
Sbjct: 527 ITVPVLIDNIFYDFDKATLRPESKQALDELVKLLNENGNVTIELSAHCD---YKGSKEYN 583

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            +L+  RA S  Q L+  G+++DR+S + G+   + K+
Sbjct: 584 KQLAQRRAESVVQYLIAGGIAKDRLSPV-GYGKEKPKV 620


>gi|297580458|ref|ZP_06942385.1| OmpA family protein [Vibrio cholerae RC385]
 gi|297536104|gb|EFH74938.1| OmpA family protein [Vibrio cholerae RC385]
          Length = 207

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200


>gi|332528331|ref|ZP_08404331.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
 gi|332042202|gb|EGI78528.1| OmpA/MotB [Hylemonella gracilis ATCC 19624]
          Length = 186

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   +++     L+      + I GHTD    R     N  L   RA + 
Sbjct: 85  FDYDSYVIKPEFQKLIEAQARYLSSDPALRVVIEGHTDE---RGGREYNLALGQRRAEAV 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV++ +I  +S F   +     +++   S NRR +I
Sbjct: 142 RRALSLLGVADTQIDAVS-FGEEKPVSEGSNESAWSQNRRAEI 183


>gi|70728662|ref|YP_258411.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68342961|gb|AAY90567.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 418

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++ LP T+    ++ + +    +  + I GH DA+        N +LS DRA S   +  
Sbjct: 245 AMLLPVTLGPFTRVAKAVEGDPKTAVLILGHADAT---GPTLANQKLSRDRAQSVAAIFS 301

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            SG+ +DR+  + G      + A+D     S NRR++I++  R
Sbjct: 302 LSGLKQDRLM-LRGMGSVMPRAANDSPQGRSLNRRVEIMLTQR 343


>gi|319641785|ref|ZP_07996465.1| hypothetical protein HMPREF9011_02063 [Bacteroides sp. 3_1_40A]
 gi|317386574|gb|EFV67473.1| hypothetical protein HMPREF9011_02063 [Bacteroides sp. 3_1_40A]
          Length = 396

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++K K  +Q + K I   +   +   I+K ++   ++  +   + D  N   F+   +  
Sbjct: 238 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 291

Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+   ++ +I ++ L  +++   I G TDA   +  ++ N  LS  RA +    L+K G
Sbjct: 292 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 348

Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328
           V  +++ K  G        + +  N
Sbjct: 349 V-PNKMLKAKGVGAKISYASQNAPN 372


>gi|294775157|ref|ZP_06740683.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|294450969|gb|EFG19443.1| OmpA family protein [Bacteroides vulgatus PC510]
          Length = 396

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++K K  +Q + K I   +   +   I+K ++   ++  +   + D  N   F+   +  
Sbjct: 238 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 291

Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+   ++ +I ++ L  +++   I G TDA   +  ++ N  LS  RA +    L+K G
Sbjct: 292 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 348

Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328
           V  +++ K  G        + +  N
Sbjct: 349 V-PNKMLKAKGVGAKISYASQNAPN 372


>gi|254883115|ref|ZP_05255825.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254835908|gb|EET16217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 410

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++K K  +Q + K I   +   +   I+K ++   ++  +   + D  N   F+   +  
Sbjct: 252 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 305

Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+   ++ +I ++ L  +++   I G TDA   +  ++ N  LS  RA +    L+K G
Sbjct: 306 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 362

Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328
           V  +++ K  G        + +  N
Sbjct: 363 V-PNKMLKAKGVGAKISYASQNAPN 386


>gi|269128089|ref|YP_003301459.1| OmpA/MotB domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268313047|gb|ACY99421.1| OmpA/MotB domain protein [Thermomonospora curvata DSM 43183]
          Length = 365

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSL 289
           +   +F   S+         L  +   L     T  + + GHTD         DN  LS 
Sbjct: 87  QADVLFKTGSADLSAAAEKYLADVVAKLKEANVTGEVQVVGHTDDV---GEPEDNLALSK 143

Query: 290 DRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIA--SDPMNSANRRIDIL 337
            RA +  Q +    ++   I+ I  G      +    S      NRR+ IL
Sbjct: 144 RRAEAVVQAMQPQ-LANTGITLIPEGKGESEPREKGTSPQARQRNRRVSIL 193


>gi|150004726|ref|YP_001299470.1| hypothetical protein BVU_2187 [Bacteroides vulgatus ATCC 8482]
 gi|149933150|gb|ABR39848.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 423

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           ++K K  +Q + K I   +   +   I+K ++   ++  +   + D  N   F+   +  
Sbjct: 265 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 318

Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P+   ++ +I ++ L  +++   I G TDA   +  ++ N  LS  RA +    L+K G
Sbjct: 319 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 375

Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328
           V  +++ K  G        + +  N
Sbjct: 376 V-PNKMLKAKGVGAKISYASQNAPN 399


>gi|255262798|ref|ZP_05342140.1| OmpA domain protein [Thalassiobium sp. R2A62]
 gi|255105133|gb|EET47807.1| OmpA domain protein [Thalassiobium sp. R2A62]
          Length = 176

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F   +S         L      +L +S  +  + GH D          N  L   R
Sbjct: 66  DRVLFTVDTSSLTAAGRSTLDGQATWLLTNSDYLAVVEGHADEQ---GTREYNLALGARR 122

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR-IDIL 337
           A +  + L+  GV  +R+  +S +   R     + +   + NRR + I+
Sbjct: 123 ANAVREYLISRGVPSNRLRTVS-YGKERPTEICSEEACYAKNRRAVTII 170


>gi|229526017|ref|ZP_04415421.1| protein F-related protein [Vibrio cholerae bv. albensis VL426]
 gi|229336175|gb|EEO01193.1| protein F-related protein [Vibrio cholerae bv. albensis VL426]
          Length = 204

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|315609087|ref|ZP_07884056.1| OmpA family protein [Prevotella buccae ATCC 33574]
 gi|315249157|gb|EFU29177.1| OmpA family protein [Prevotella buccae ATCC 33574]
          Length = 755

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   ++   +   PE+   L ++ ++L  +  V I +  H D   ++     N RLS  R
Sbjct: 587 DNIFYEFDKANLTPESTKALDELVKLLNENPNVTIELSAHCD---YKGSMEYNKRLSQRR 643

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L+  G++ DR++ + G+   R K
Sbjct: 644 AEAVVAYLVGHGIARDRLTPV-GYGKERPK 672


>gi|224531999|ref|ZP_03672631.1| outer membrane protein [Borrelia valaisiana VS116]
 gi|224511464|gb|EEF81870.1| outer membrane protein [Borrelia valaisiana VS116]
          Length = 389

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F   S   L +    L  I E+
Sbjct: 253 IETEVEHYLQEKQIKSINVEKNNKGINLS-FDIE----FYPDSFQILQKEYKKLDIIAEL 307

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       + I GHT+             LS  RA +    L+K  V ++D+I    G+ 
Sbjct: 308 LEKFKKNNLLIEGHTEHFGLEEEMH---ELSEKRARAIGNYLIKMRVKNKDQIL-FKGWG 363

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 364 SKKPKYPKSSPLKAKNRRVEITILN 388


>gi|218708964|ref|YP_002416585.1| sodium type flagellar protein MotY precursor [Vibrio splendidus
           LGP32]
 gi|218321983|emb|CAV17990.1| Sodium type flagellar protein MotY precursor [Vibrio splendidus
           LGP32]
          Length = 293

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S      +   L +I + +      +++ +  +TD+   + I+++   LS  RA S
Sbjct: 187 YDRNSDQLNKSSRKRLSQIADYVRYNQDIDLVLVATYTDSVDSKGISQN---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +     G+ EDRI ++ G+   R    ++       NRR+ I +   Q
Sbjct: 244 LREYFKSLGLPEDRI-QVQGYGKRRPIADNNSPIGKDKNRRVVISLGRTQ 292


>gi|187250865|ref|YP_001875347.1| outer membrane protein [Elusimicrobium minutum Pei191]
 gi|186971025|gb|ACC98010.1| Outer membrane protein [Elusimicrobium minutum Pei191]
          Length = 993

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           S     +   ++++    L       I + G+TD          N  +SL RA +A ++L
Sbjct: 896 SCELTEKQKNIIREKCAALKDFPYTKIIVTGNTDNI---GSYGVNKSISLRRANAAAKIL 952

Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           ++ G++ D I  I G A+      +      + NRR DIL+ 
Sbjct: 953 IEEGLNPDTIE-IMGVAYDNPVTGNLTREGRAMNRRTDILIL 993


>gi|148262600|ref|YP_001229306.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396100|gb|ABQ24733.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 199

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  S    P     L    +++   +   I I GH D          N  L   R
Sbjct: 92  EKIFFDFDSYALTPIARDTLTNNAKIMGKRAGVKIQIEGHCDEL---GSDEYNLALGEKR 148

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341
           A SA Q L+  GV   R+  +  +   +           + NRR + ++  +
Sbjct: 149 AKSAMQYLVTMGVPAQRL-AVISYGKEKPADPGHGEAAWAKNRRNEFVIISK 199


>gi|332188277|ref|ZP_08390004.1| ompA family protein [Sphingomonas sp. S17]
 gi|332011673|gb|EGI53751.1| ompA family protein [Sphingomonas sp. S17]
          Length = 175

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F +  +    E    L ++    A     + +RGH+D+         N R+S  RA +A 
Sbjct: 66  FPEGGAELDREAKAALDRLAADPAVRQGHLILRGHSDSD---GDDAGNRRMSRQRAEAAR 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVED 340
             L   G++  R+ K+      R    +            + NRR++I ++ 
Sbjct: 123 DYLAGKGIASARM-KVIALGETRPIAPNAKPDGTDDSAGRARNRRVEIELDR 173


>gi|259908602|ref|YP_002648958.1| OmpA family protein [Erwinia pyrifoliae Ep1/96]
 gi|224964224|emb|CAX55731.1| OmpA family protein [Erwinia pyrifoliae Ep1/96]
 gi|283478573|emb|CAY74489.1| putative type VI secretion system, core protein [Erwinia pyrifoliae
           DSM 12163]
          Length = 407

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 167 INKEENYFLPPLSKEKILAMKRKK--RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           + +     L  + +  +  +   K   +  ++  +   LS L+A + +   + +      
Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKYGAVSQISFDLRQRLSDLIASHQLN--ITDGDDGNK 278

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283
           +I  ID     +F    +   PE   ++ ++   +      + I  +TD     +     
Sbjct: 279 VILPIDS----LFSPPGAELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFMS 334

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           N   S  +A +   ++++         +  G    +  + ++  ++   NRR++I +
Sbjct: 335 NDEYSAAQAQAIGTMMLQLIAQPCINVRAEGRGDSQGLLPNNSASNRTQNRRVEITL 391


>gi|184159157|ref|YP_001847496.1| outer membrane protein [Acinetobacter baumannii ACICU]
 gi|213158280|ref|YP_002320331.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB0057]
 gi|215482606|ref|YP_002324798.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB307-0294]
 gi|239501025|ref|ZP_04660335.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii AB900]
 gi|301346652|ref|ZP_07227393.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB056]
 gi|301513292|ref|ZP_07238529.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB058]
 gi|301596453|ref|ZP_07241461.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB059]
 gi|183210751|gb|ACC58149.1| Outer membrane protein [Acinetobacter baumannii ACICU]
 gi|193078077|gb|ABO13012.2| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|213057440|gb|ACJ42342.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB0057]
 gi|213988269|gb|ACJ58568.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           AB307-0294]
          Length = 187

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 79  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ SGV+  ++  +S +            ++   NRR++I
Sbjct: 136 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 177


>gi|91975488|ref|YP_568147.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91681944|gb|ABE38246.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 212

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 74/193 (38%), Gaps = 18/193 (9%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
             D      + +++  ++       +         ++ +  L  + + +LS    + I  
Sbjct: 29  AADDATEDQILRALAPKKPLTRSLSASRPAADPAERQFVDTLRNRTTRSLSSGEREQIA- 87

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRG 270
                  +  I + I        FD +S+    +    +  +G+ L++         + G
Sbjct: 88  --TLAKDKPNIDLEIT-------FDYNSANISRKAEPAVDALGKALSNPDLKGSTFVVAG 138

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS 329
           HTD+         N  LS  RA +  +VL++  G++   +  + G+  ++ K A  P + 
Sbjct: 139 HTDSI---GGDAYNQELSERRADTIKRVLVEKYGIAGSDLVTV-GYGENKPKDAVRPADP 194

Query: 330 ANRRIDILVEDRQ 342
           +NRR+ ++    Q
Sbjct: 195 SNRRVQVVNMTSQ 207


>gi|148253708|ref|YP_001238293.1| hypothetical protein BBta_2207 [Bradyrhizobium sp. BTAi1]
 gi|146405881|gb|ABQ34387.1| putative outer membrane protein of unknown function [Bradyrhizobium
           sp. BTAi1]
          Length = 216

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 17/183 (9%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           K         + P +  +I A  + K+   +    +     L      +      T+  I
Sbjct: 42  KPKPATRGLSVGPQAAPQIDATAQAKQSTFIDSMRNRKTRSLSLGEREQLAEIAATKPKI 101

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNI 280
            + I        FD +S+     +I  +Q++G+ L+           + GHTD       
Sbjct: 102 DLEIQ-------FDYNSAAISKTSIQAVQELGKALSD-PNLKGSTFMVAGHTDGI---GS 150

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              N  LS  RA +  + L++  G++   +  + G+   +LK A++P +  NRR+ ++  
Sbjct: 151 DGFNQDLSERRADTLKRYLVEKFGLAGQDLVTV-GYGKTKLKDAANPADPVNRRVQVVNM 209

Query: 340 DRQ 342
           D +
Sbjct: 210 DTK 212


>gi|163854239|ref|YP_001642282.1| peptidoglycan-associated lipoprotein [Methylobacterium extorquens
           PA1]
 gi|218533185|ref|YP_002424001.1| peptidoglycan-associated lipoprotein [Methylobacterium
           chloromethanicum CM4]
 gi|240141700|ref|YP_002966180.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium
           extorquens AM1]
 gi|163665844|gb|ABY33211.1| peptidoglycan-associated lipoprotein [Methylobacterium extorquens
           PA1]
 gi|218525488|gb|ACK86073.1| peptidoglycan-associated lipoprotein [Methylobacterium
           chloromethanicum CM4]
 gi|240011677|gb|ACS42903.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium
           extorquens AM1]
          Length = 170

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +++  +   F+  S+   P     L K    L         I GH D    R        
Sbjct: 55  VVNIGDRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS--- 111

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337
           L   RA +    L   G+S  R+  +S +   R     + ++  S NRR + +L
Sbjct: 112 LGARRAQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164


>gi|78224682|ref|YP_386429.1| OmpA/MotB [Geobacter metallireducens GS-15]
 gi|78195937|gb|ABB33704.1| OmpA/MotB [Geobacter metallireducens GS-15]
          Length = 194

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +        F+  SS+   E    L K  E+L  ++  + I G+ D    R     N  
Sbjct: 82  QLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFKVRIEGNCDE---RGSDEYNLA 138

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341
           L   RA +A + L+  GV  DR+S IS +   +       +   + NRR + +V  +
Sbjct: 139 LGERRAQAAMKYLLTMGVPADRLSIIS-YGEEKPADPGHDEAAWAKNRRDEFVVMVK 194


>gi|114561780|ref|YP_749293.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333073|gb|ABI70455.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 479

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
           ++ +  +          G+   I        +  +F   S   LPE   +++ + + L  
Sbjct: 338 IIEETTLNNNRVGIDLQGLTDEIAKTGHVALDGLLFKYDSDELLPEAYPIVEVVAQYLQT 397

Query: 262 STEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             + +  + GH+D          N  LS  RA +    L+K      +  +  G   +  
Sbjct: 398 HPKQLFYVVGHSDDQ---GSQAYNQTLSEKRATAIKTRLIKQFSISAQQVEAKGVGEYSP 454

Query: 321 KIAS--DPMNSANRRIDILVED 340
              +  +     NRR+++++  
Sbjct: 455 IANNLDEAGQKQNRRVELVIRS 476


>gi|238786643|ref|ZP_04630444.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia frederiksenii ATCC 33641]
 gi|238725011|gb|EEQ16650.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia frederiksenii ATCC 33641]
          Length = 168

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD             +Q IG+ L +     + + GHTDA+        N +LS +R
Sbjct: 61  NKVLFDSDVRKLNSSGTQTVQNIGQALHNVGINHLRVDGHTDAT---GEDSYNQKLSYER 117

Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
           A +    L   G+    I  +  G         S    + NRR+ ++V
Sbjct: 118 AAAVADSLATIGIPRTNIDVRGRGKLEPVADNRSAKGRAENRRVAMIV 165


>gi|221209346|ref|ZP_03582327.1| OmpA family protein [Burkholderia multivorans CGD1]
 gi|221170034|gb|EEE02500.1| OmpA family protein [Burkholderia multivorans CGD1]
          Length = 277

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F KSS    LP     L   I ++ A   T  I + GHTD          N  LS  RA 
Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIEVVGHTDRI---GSDESNRALSRARAE 221

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338
           +  + L+  G+   RI +  G    +      P  S         +RR+ I V
Sbjct: 222 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 273


>gi|156977399|ref|YP_001448305.1| hypothetical protein VIBHAR_06186 [Vibrio harveyi ATCC BAA-1116]
 gi|156528993|gb|ABU74078.1| hypothetical protein VIBHAR_06186 [Vibrio harveyi ATCC BAA-1116]
          Length = 216

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S   P     L ++   L+     I++ GHTD+   +     N  L L RA +  
Sbjct: 107 FGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDS---KGSEGYNQELGLQRALTTS 163

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +VL   GV   RI  +      +   ++      + NRR ++ V
Sbjct: 164 KVLSTDGVERTRIV-VRSLGETQPIASNSTVEGRAQNRRSEVWV 206


>gi|120600520|ref|YP_965094.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|146294678|ref|YP_001185102.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|120560613|gb|ABM26540.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
 gi|145566368|gb|ABP77303.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 202

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    ++ I   L       ++I GHT  +        N  LS +RA +
Sbjct: 79  LFPNDSAFIAPEYYSQIEDIAAFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
               L     +   R++ I G+   R  +      +   NRR+
Sbjct: 136 VTAALADRFNIDRSRLTAI-GYGSSRPIVLEQTPEAEMRNRRV 177


>gi|311697262|gb|ADQ00134.1| outer membrane protein OprF [marine bacterium HP15]
          Length = 374

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E    + +I   +L ++  VI I GH DA      +  N RLS  RA S 
Sbjct: 269 FPLDSASIPAEFDSEIDRIAALILENTGTVIEIAGHADA---SGDSVYNQRLSQRRAESV 325

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L+ ++    DRI  + G+   +    ++       NRR++
Sbjct: 326 ASALISRNATIADRIKAV-GYGETQPIATNETAQGREMNRRVE 367


>gi|260551454|ref|ZP_05825638.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. RUH2624]
 gi|260405448|gb|EEW98941.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. RUH2624]
          Length = 191

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 83  FDYDSSDLSAEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ SGV+  ++  +S +            ++   NRR++I
Sbjct: 140 QSYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181


>gi|118591825|ref|ZP_01549220.1| possible OmpA family member [Stappia aggregata IAM 12614]
 gi|118435468|gb|EAV42114.1| possible OmpA family member [Stappia aggregata IAM 12614]
          Length = 628

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 11/178 (6%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           ++ ++E       + +++ +    +    D+ +  ++     V        + E+ R   
Sbjct: 445 RNYDRELPPLQVGIPRDRYIVPAGRANYDDIYQTFTAPPVEQVEQAYSLRDIRESERLRD 504

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRN 279
            +  +D  +T  FD  S++     +  L+ I            T V+ I GHTDA     
Sbjct: 505 KVRRVDL-DTITFDTGSAVVRQSQVPQLEDIARASQAVIEQDPTTVLLIEGHTDAV---G 560

Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               N  LS  RA +  ++L    GV+ + +  + G+    LK+ +      NRR+ I
Sbjct: 561 SDVSNLALSDRRAETVARILADVYGVAPENMV-VQGYGEDYLKVDTQGAEERNRRVTI 617


>gi|89889916|ref|ZP_01201427.1| hypothetical protein BBFL7_01736 [Flavobacteria bacterium BBFL7]
 gi|89518189|gb|EAS20845.1| hypothetical protein BBFL7_01736 [Flavobacteria bacterium BBFL7]
          Length = 318

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 230 DQRNTPM---FDKSSSI--PLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARD 283
           D R  P+   F   +S      E    + K+   L    +   I  GHTD +        
Sbjct: 205 DIRANPLILHFATGASTINLSNEQREKISKMVHYLDARPQASLISVGHTDNT---GSRST 261

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           N  +S +RA  A   L+++G+S  RI   SG         +D       NRR+ + ++
Sbjct: 262 NTTISANRAEFAKSYLVENGISSSRIES-SGKGPDEPIATNDTEEGKEQNRRVVVTLK 318


>gi|120554618|ref|YP_958969.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324467|gb|ABM18782.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 189

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +S   P+   VL      LA +    + + GH D    R     N  L   RA + 
Sbjct: 88  FDFDTSEIKPDARDVLVAHARYLADNPRQQVRLEGHADE---RGTKEYNLALGERRANAV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L+ +G S  +I  +S +   +  +     +  + NRR++++
Sbjct: 145 QRFLIVNGASRGQIETVS-YGEEKPAVRGSTESAWAQNRRVELV 187


>gi|326388398|ref|ZP_08209994.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207130|gb|EGD57951.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 172

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        E+  +LQ   + LA      I+I GH D    R     N  L   RA +A
Sbjct: 70  FELDKYNVDTESQGILQSQAQWLAKYPGKKITIEGHCDE---RGTREYNLALGERRANAA 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339
              L+  GV   RI+ +S      + + SD  + + NRR + I VE
Sbjct: 127 KTYLVGLGVDASRINTVSYGKERPIALGSDEASWAKNRRAVTITVE 172


>gi|308186299|ref|YP_003930430.1| Outer membrane protein A precursor [Pantoea vagans C9-1]
 gi|308056809|gb|ADO08981.1| Outer membrane protein A precursor [Pantoea vagans C9-1]
          Length = 356

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336
             RA S    L+  G+  ++IS   G         +  D +   N         RR++I
Sbjct: 285 EKRAQSVVDYLVSKGIPSNKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLSPDRRVEI 342


>gi|49474668|ref|YP_032710.1| peptidoglycan-associated lipoprotein [Bartonella quintana str.
           Toulouse]
 gi|49240172|emb|CAF26636.1| Peptidoglycan-associated lipoprotein [Bartonella quintana str.
           Toulouse]
          Length = 172

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS   P+   VL +  + +L H +  I I GH D    R     N  L   R
Sbjct: 62  DRVFFSLDSSSIEPDAEAVLIRQAQWLLRHPSYSIVIEGHADE---RGTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GVS  R+  IS +   R     D ++  + NRR
Sbjct: 119 AVAVRNYLISLGVSSQRMQTIS-YGKERPVAVCDDISCWNQNRR 161


>gi|260428375|ref|ZP_05782354.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45]
 gi|260422867|gb|EEX16118.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45]
          Length = 817

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+    E   VL ++  ++A +      + I GH D          N  LS+ RA 
Sbjct: 236 FAIDSARLKDEHRAVLAELRRLIAVAEPGALRVVIVGHADE---SGPELHNSGLSVRRAR 292

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
           +    L ++ V+      I+GF        +D     S NRR++I
Sbjct: 293 AVRTALGRASVAG-----IAGFGEAAPLDPADSVEARSRNRRVEI 332


>gi|213971390|ref|ZP_03399504.1| OmpA family protein [Pseudomonas syringae pv. tomato T1]
 gi|213923833|gb|EEB57414.1| OmpA family protein [Pseudomonas syringae pv. tomato T1]
          Length = 417

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           ++   A+ G + +      SS    D          +   K  +T             ++
Sbjct: 60  QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 119

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190
              S  +   K          K    +   +   + +  +      ++   K L M   K
Sbjct: 120 PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 179

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             Q    +    L   + D+      F+  R   L++I    ++       ++ LP T+ 
Sbjct: 180 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 234

Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            + ++ +V+       + I GH D          N ++S +RA S   +   SG+  +R+
Sbjct: 235 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 291

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           S+  G      + A+D     + NRR++IL+  +
Sbjct: 292 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 324


>gi|218676336|ref|YP_002395155.1| putative protein F-related protein [Vibrio splendidus LGP32]
 gi|218324604|emb|CAV26143.1| putative protein F-related protein [Vibrio splendidus LGP32]
          Length = 203

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+ P P     L  +G  L+   +  + I GHTD +      R N  LS  RA   
Sbjct: 99  FKTGSTSPEPAYNNWLDTLGSYLSRRQDIDVVIEGHTDNT---GSDRVNDPLSEQRAKEV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              L  + VS   I    GF  +      AS    + NRR+++++
Sbjct: 156 KARLESNYVSSRAIY-TRGFGEYVPACNNASVQGKACNRRVELML 199


>gi|163786724|ref|ZP_02181172.1| hypothetical protein FBALC1_16102 [Flavobacteriales bacterium
           ALC-1]
 gi|159878584|gb|EDP72640.1| hypothetical protein FBALC1_16102 [Flavobacteriales bacterium
           ALC-1]
          Length = 308

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 220 TRTGILISIIDQRNTPM---FDKSSSI--PLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
           T   +  +    R  P+   F+   +      E    +  I   +      + + GHTD 
Sbjct: 186 TDEALEAACEAIRKNPLVLHFNTGQAQINLTAEQRQKIADISRCVDKLGVKVQVVGHTDN 245

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           +     A  N  L  DRA  A   L+++G+  D +   S G        A+D   + NRR
Sbjct: 246 T---GDADTNMTLGQDRADFAKGYLVRNGILSDNVEATSKGQTEPIADNATDEGKAKNRR 302

Query: 334 IDILV 338
             I +
Sbjct: 303 TVITI 307



 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 226 ISIIDQRNTPMFDKSS-SIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNI 280
           I I D  N   F  S+ SI  P +  V  ++ ++    LA+  + I I G+  +    N 
Sbjct: 69  IKINDNFN---FKTSNFSILEPISTGVTSEVAKLKDYLLANPLKDIDITGYYRSDETNNS 125

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           A  N  L L RA +    L+  GV   +I
Sbjct: 126 AYPN--LGLARANAVKNYLISQGVPSRQI 152


>gi|114570660|ref|YP_757340.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114341122|gb|ABI66402.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 304

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F   S + LP++   L  + ++L       + + GHTD          N  LS  R
Sbjct: 198 DGLLFAHDSDVLLPDSATALTALRDLLTERPSLTLYVVGHTD---MSGSLTYNMSLSERR 254

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
           A S    L++  G+  DR++  +G      + ++  D   + NRR++I+
Sbjct: 255 AASVVTALVEDYGIRMDRLTA-AGVGPLAPEASNGTDDGRTLNRRVEIV 302


>gi|310767498|gb|ADP12448.1| OmpA family protein [Erwinia sp. Ejp617]
          Length = 407

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 167 INKEENYFLPPLSKEKILAMKRKK--RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           + +     L  + +  +  +   K   +  ++  +   LS L+A + +   + +      
Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKHGAVSQISFDLRQRLSDLIASHQLN--ITDGDDGNK 278

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283
           +I  ID     +F    +   PE   ++ ++   +      + I  +TD     +     
Sbjct: 279 VILPIDS----LFSPPGAELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFMS 334

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           N   S  +A +   ++++         +  G    +  + ++  ++   NRR++I +
Sbjct: 335 NDEYSAAQAQAIGTMMLQLIAQPCINVRAEGRGDSQGLLPNNSASNRTQNRRVEITL 391


>gi|56697940|ref|YP_168311.1| peptidoglycan-associated lipoprotein [Ruegeria pomeroyi DSS-3]
 gi|56679677|gb|AAV96343.1| peptidoglycan-associated lipoprotein [Ruegeria pomeroyi DSS-3]
          Length = 181

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE    L    + +L ++    +I GH D          N  L   R
Sbjct: 71  DRVLFAVDQSTLGPEAQATLGAQAQWLLTNTDYTATIEGHADEQ---GTREYNLALGARR 127

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333
           A +A + L+  GV+  R+  +S      ++I SD    S NRR
Sbjct: 128 ANAAREFLISRGVAGSRLKTVSYGKERPIEICSDEACYSKNRR 170


>gi|27904776|ref|NP_777902.1| peptidoglycan-associated lipoprotein precursor [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|46396115|sp|Q89AJ5|PAL_BUCBP RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|27904174|gb|AAO27007.1| peptidoglycan-associated lipoprotein precursor [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 173

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +    K    L+    DN      F+ T   +      + NT  F  ++     +    L
Sbjct: 39  EQETNKSKQQLTNFSEDN------FDETLEKLK-----KGNTIYFPFNNHQVNSKYAKNL 87

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             + + L H +   I I GHTD+   R   + N  L   RA S    L   GVS  +I+ 
Sbjct: 88  NDLAQFLCHHSNQKIMIEGHTDS---RGTNKYNMYLGQKRADSVKLYLESKGVSNQQITT 144

Query: 312 ISGFAHHRLKIASDPMN--SANRRIDIL 337
           +S +   +     +  N  S NRR  I+
Sbjct: 145 VS-YGSSKPVAHGNKENSYSKNRRSVII 171


>gi|255536190|ref|YP_003096561.1| OmpA [Flavobacteriaceae bacterium 3519-10]
 gi|255342386|gb|ACU08499.1| OmpA [Flavobacteriaceae bacterium 3519-10]
          Length = 474

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +  +F+   +   PE+   L    +++  S     I GHTD    +     N +LS  RA
Sbjct: 356 DNILFNFDKATIRPESKEKLDAAAQIIKDSQGKFLIIGHTDK---KGAESYNLKLSQRRA 412

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
            +    L   GV++  +  + G       +     N+ 
Sbjct: 413 GAVVDALEARGVADSSLKSM-GVGEQDATVPETASNAE 449


>gi|254476621|ref|ZP_05090007.1| OmpA family protein [Ruegeria sp. R11]
 gi|214030864|gb|EEB71699.1| OmpA family protein [Ruegeria sp. R11]
          Length = 176

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNW 285
            D+ +   F    S   P+    +  +  VL  +      + + GH+DAS  R+    N 
Sbjct: 63  QDRESHIFFLSGGSRLSPQMERQVVLLAGVLNTAPMKDACLRLTGHSDASGGRDA---NR 119

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           RLS  RA      L +     DR+ ++ G                NRR+ I
Sbjct: 120 RLSEQRAEVVAAALRRRLDRGDRVEEVRGVGEETPLEGWPSTARENRRVSI 170


>gi|153833252|ref|ZP_01985919.1| outer membrane protein [Vibrio harveyi HY01]
 gi|148870523|gb|EDL69438.1| outer membrane protein [Vibrio harveyi HY01]
          Length = 216

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S   P     L ++   L+     I++ GHTD+   +     N  L L RA +  
Sbjct: 107 FGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDS---KGSEGYNQELGLQRALTTS 163

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +VL   GV   RI  +      +   ++      + NRR ++ V
Sbjct: 164 KVLSTDGVERTRIV-VRSLGETQPIASNSTVEGRAQNRRSEVWV 206


>gi|50085693|ref|YP_047203.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp.
           ADP1]
 gi|49531669|emb|CAG69381.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp.
           ADP1]
          Length = 193

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 85  FDYDSSDLSTEDYQTLQAHAQFLIANANSRVALTGHTDE---RGTREYNMALGERRAKAV 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +             +   NRR++I
Sbjct: 142 QSYLITNGVNPQQLEAVS-YGKEMPINPGHNEAAWKENRRVEI 183


>gi|305667116|ref|YP_003863403.1| hypothetical protein FB2170_12741 [Maribacter sp. HTCC2170]
 gi|88708050|gb|EAR00288.1| hypothetical protein FB2170_12741 [Maribacter sp. HTCC2170]
          Length = 366

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 20/270 (7%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ--S 140
           I      P   +           +   + D   G+ +  + +        + +   Q   
Sbjct: 104 ISAASFRPSSETVEIKPAYAQWELGAPAPDCASGNPDDCRYWCYKGYPAEFTTLDTQVLG 163

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
                + T    K     K   LE +   EE          K +  K    +++    ++
Sbjct: 164 ADASVAKTPIGSKNASYTKRVLLEPTRVIEEVIPAQYDEITKTVLDKDAYTVEETVPAVT 223

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQ-KIGEV 258
            T++  V         +         S+++ +  P+ ++  S+        ++  ++  V
Sbjct: 224 KTVTKEVLKEKGGLTTWNEVE----CSLVEYQALPINWNLGSATLTSSAKNIIDTRLMPV 279

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L  +    + I  HTD    R  +  N  LS  RA +    L+  GV+   +   +G+  
Sbjct: 280 LQQNPGVKLEIASHTD---VRGNSGSNQDLSERRAKAVADYLITKGVNSS-LLVANGYGE 335

Query: 318 HRLKIA-------SDPMNSANRRIDILVED 340
           +++K         ++  ++ NRR +  + +
Sbjct: 336 NKVKNRCKEGVSCTEREHAVNRRTEFRLIN 365


>gi|84393403|ref|ZP_00992162.1| sodium-type flagellar protein MotY precursor [Vibrio splendidus
           12B01]
 gi|84376012|gb|EAP92901.1| sodium-type flagellar protein MotY precursor [Vibrio splendidus
           12B01]
          Length = 293

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S      +   L +I + +      +++ +  +TD+   + I+++   LS  RA S
Sbjct: 187 YDRNSDQLNKSSRKRLSQIADYVRYNQDIDLVLVATYTDSVDSKGISQN---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +     G+ EDRI ++ G+   R    ++       NRR+ I +   Q
Sbjct: 244 LREYFKSLGLPEDRI-QVQGYGKRRPIADNNSPIGKDKNRRVVISLGRTQ 292


>gi|291570403|dbj|BAI92675.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 204

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           ++ ++       +     + +   ++  + + I  +   N   F+  S+   P+ + ++ 
Sbjct: 51  ISGQVRQMRDAQIIPAAFENIPGIKSVFSTLKIDPVRIENRIYFNSGSAQLNPQDLQIIT 110

Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           KI E L       + I GHTD    R  A  N +L+L+RA +    L K G+   R+  +
Sbjct: 111 KIQEFLDRYPQLSLRIIGHTD---LRGNAARNQQLALNRAIAVRDALTKQGIDPKRLEVV 167

Query: 313 SGFAHHRLK 321
               + +  
Sbjct: 168 ---GNSQPP 173


>gi|320352308|ref|YP_004193647.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320120810|gb|ADW16356.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 189

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 11/105 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRA 292
           +F   S+ P P     L  I  +       I+   + GHT +         N RLS  RA
Sbjct: 75  LFPLGSTEPEPGQTDQL--ISGLRHCQVNPITPLVVTGHTCSL---GTEATNLRLSRLRA 129

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
                +L   G +   ++ +SG         +      NRR+ ++
Sbjct: 130 EQVATLLRDRGYT---VATVSGKGATDPVSTNPTKRHLNRRVTLV 171


>gi|311280141|ref|YP_003942372.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308749336|gb|ADO49088.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 362

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N +LS
Sbjct: 234 KSDVLFNFNKATLKPEGKQALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSEAY-NQKLS 290

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA S    L+  G+  ++IS   G         S   N           + +RR++I 
Sbjct: 291 TQRAQSVVDYLVSKGIPANKISA-RGMGKSDPVTGSTCNNVKARAALIDCLAPDRRVEIE 349

Query: 338 VE 339
           V+
Sbjct: 350 VK 351


>gi|253996272|ref|YP_003048336.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982951|gb|ACT47809.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8]
          Length = 365

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + + GHTD          N +LS  RA      L+  G+  DR+  + G       ++ D
Sbjct: 279 VKVTGHTDKL---GSEAYNQKLSEKRANQVRDYLIAQGIEADRLVAV-GKGELVPVVSCD 334

Query: 326 PMNSA---------NRRIDI 336
            +            NRR++I
Sbjct: 335 GVKGRKALIECLAPNRRVEI 354


>gi|294675945|ref|YP_003576560.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474765|gb|ADE84153.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 739

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 19/115 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ SS+   PE    L  + + +A      + + GHTD+         N +LS  RA + 
Sbjct: 498 FEPSSATIKPEDGPKLDALAKAMAQCQDFRMEVAGHTDSQ---GSDEGNRKLSQARAEAV 554

Query: 296 ------YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                  +VL ++   +       G+   +    +D      A RRI+ ++ D +
Sbjct: 555 ITALSARRVLTRNLTPK-------GYGESQPIAENDTDKGREATRRIEFVLLDAK 602


>gi|149909537|ref|ZP_01898191.1| outer membrane protein [Moritella sp. PE36]
 gi|149807442|gb|EDM67393.1| outer membrane protein [Moritella sp. PE36]
          Length = 211

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 181 EKILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +   A + +  L  + ++I S  +S   A+ ++     ++  +G +I+         FD 
Sbjct: 62  QVEQAGEYQPTLDFINQQIVSAGVSETCAEFLLTNGFLQSMDSGQMIA------RVYFDF 115

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            ++    ++  VL  I ++L  +   + + GH D +     A  N+ L L R+ S  Q L
Sbjct: 116 DNAHLTDKSKYVLDTIMQLLKLNNNNLVVEGHADTT---GTADYNFSLGLKRSRSVAQYL 172

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            + GV + R+   +          +D       NRR++I
Sbjct: 173 KQLGVEKGRLEA-TSVGDTMPISDNDTEAGRQLNRRVEI 210


>gi|312968985|ref|ZP_07783192.1| outer membrane protein A [Escherichia coli 2362-75]
 gi|312286387|gb|EFR14300.1| outer membrane protein A [Escherichia coli 2362-75]
          Length = 346

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|307627623|gb|ADN71927.1| outer membrane protein A [Escherichia coli UM146]
          Length = 365

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352

Query: 338 VE 339
           V+
Sbjct: 353 VK 354


>gi|307552789|gb|ADN45564.1| outer membrane protein A [Escherichia coli ABU 83972]
          Length = 350

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|304397112|ref|ZP_07378991.1| OmpA domain protein transmembrane region-containing protein
           [Pantoea sp. aB]
 gi|304355261|gb|EFM19629.1| OmpA domain protein transmembrane region-containing protein
           [Pantoea sp. aB]
          Length = 356

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336
             RA S    L+  G+  ++IS   G         +  D +   N         RR++I
Sbjct: 285 EKRAQSVVDYLVSKGIPSNKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLSPDRRVEI 342


>gi|259415100|ref|ZP_05739022.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259349010|gb|EEW60764.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 638

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           I + +   F+  S+    ++  V+ KI ++L    E  + I+GHTD+         N  L
Sbjct: 491 IQRADKIAFEPGSATVAADSARVIDKIAKLLQQCGEIPLEIQGHTDSQ---GREEMNLNL 547

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           S  RA S    L    +         G+       ++   +    NRRI+
Sbjct: 548 SQARAQSVLNALRARRILTGSFVA-KGYGEDNPIASNSTEDGREANRRIE 596


>gi|218688793|ref|YP_002397005.1| outer membrane protein A [Escherichia coli ED1a]
 gi|218426357|emb|CAR07182.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli ED1a]
          Length = 346

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|215486075|ref|YP_002328506.1| outer membrane protein A [Escherichia coli O127:H6 str. E2348/69]
 gi|215264147|emb|CAS08491.1| outer membrane protein A (3a; II*; G; d) [Escherichia coli O127:H6
           str. E2348/69]
          Length = 346

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|117623167|ref|YP_852080.1| outer membrane protein A [Escherichia coli APEC O1]
 gi|115512291|gb|ABJ00366.1| OmpA [Escherichia coli APEC O1]
          Length = 370

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 242 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 298

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357

Query: 338 VE 339
           V+
Sbjct: 358 VK 359


>gi|110641146|ref|YP_668876.1| outer membrane protein A [Escherichia coli 536]
 gi|331657022|ref|ZP_08357984.1| outer membrane protein A [Escherichia coli TA206]
 gi|110342738|gb|ABG68975.1| outer membrane protein A [Escherichia coli 536]
 gi|222032681|emb|CAP75420.1| Outer membrane protein A [Escherichia coli LF82]
 gi|331055270|gb|EGI27279.1| outer membrane protein A [Escherichia coli TA206]
          Length = 346

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|218557855|ref|YP_002390768.1| outer membrane protein A [Escherichia coli S88]
 gi|7188818|gb|AAF37887.1|AF234269_1 outer membrane protein A [Escherichia coli RS218]
 gi|218364624|emb|CAR02310.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli S88]
 gi|294493105|gb|ADE91861.1| outer membrane protein A [Escherichia coli IHE3034]
 gi|323953341|gb|EGB49207.1| OmpA transmembrane domain-containing protein [Escherichia coli
           H252]
 gi|323958256|gb|EGB53965.1| OmpA transmembrane domain-containing protein [Escherichia coli
           H263]
          Length = 346

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|209547147|ref|YP_002279065.1| OmpA/MotB domain-containing protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538391|gb|ACI58325.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 189

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+   PE+   +  I + L H         I GH+ ++     A+ N  LS  RA 
Sbjct: 83  FENNSTAIEPESYRTVGLIADALHHPDLFRYKFLIVGHSSST---GSAKHNLELSQKRAD 139

Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L     VS DR+  + G           P ++ NRR+ ++
Sbjct: 140 AINEALSTTFAVSPDRLFSV-GAGEEWPINPGHPESADNRRVQLI 183


>gi|163746609|ref|ZP_02153967.1| Outer membrane protein, OmpA/MotB family [Oceanibulbus indolifex
           HEL-45]
 gi|161380494|gb|EDQ04905.1| Outer membrane protein, OmpA/MotB family [Oceanibulbus indolifex
           HEL-45]
          Length = 639

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 25/275 (9%)

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
            +  +    N  E+      D  + +  T     LK  +   ++    ++   F   +++
Sbjct: 359 GAVAVGSVLNNGEKIVSRSGDRVVVQDDTGEYRVLKDDNALIRRPGDEVQTQTFDDGSTR 418

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL------AMKRKKRL 192
                 +    ++ + +D              E   +  L +E+ +       ++  ++ 
Sbjct: 419 TIVTKNDGSRIETIRSRDGTVLRRTNFDAQGREYILVDDLVEEREVIVNDLPQVQETQQA 478

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR--------NTPMFDKSSSIP 244
           Q  + +  + L   +   +        +   +   I + R        +   F   S+  
Sbjct: 479 QRASVQDEAALRQALQAELRSDQGRTFSLRQVR-EIREVRSLAPELELDAVRFPTGSAAI 537

Query: 245 LPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            PE    L  IG  L          VI + GHTDA      A  N  LS  RA +    L
Sbjct: 538 QPEQARALANIGSTLRDMIANDPRTVILVEGHTDAV---GDAGYNLALSDRRAETVALAL 594

Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            +   V    +    G+   +L++ +     ANRR
Sbjct: 595 TEYFDVPPANLI-TQGYGESQLRVPTTTAEPANRR 628


>gi|254441790|ref|ZP_05055283.1| peptidoglycan-associated lipoprotein, putative [Octadecabacter
           antarcticus 307]
 gi|198251868|gb|EDY76183.1| peptidoglycan-associated lipoprotein, putative [Octadecabacter
           antarcticus 307]
          Length = 172

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +  MF   +S    E    L      L+ +++ ++ I GH D          N  L   R
Sbjct: 62  DRVMFAVDTSTLTAEGRNTLDGQSGWLSTNSDYLAVIEGHADEQ---GTREYNLALGARR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR-IDIL 337
           A +  + L+  G++  RI  +S      + + S+    + NRR + I+
Sbjct: 119 ANAVREYLISKGLASSRIRTVSYGKERPIAVCSEESCYAQNRRALTII 166


>gi|254487179|ref|ZP_05100384.1| outer membrane protein, OmpA/MotB family [Roseobacter sp. GAI101]
 gi|214044048|gb|EEB84686.1| outer membrane protein, OmpA/MotB family [Roseobacter sp. GAI101]
          Length = 632

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 88/298 (29%), Gaps = 23/298 (7%)

Query: 53  IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
                       + ++       L   + G   +     +   N  D  + E    +   
Sbjct: 329 ATAEAAPQEDDGLSKFEKALLLGLGAVAVGAVLKNG--SKVVSNSGDRLVVEDQNGDLRV 386

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
           LK      ++    +    F   +++ +    +     +  G+D      +       E 
Sbjct: 387 LKDDDALVRQAGDEVRRETFNDGSARTTVTKPDGSKVVTILGRDGTVLRRINIDPQGNEY 446

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
                   E+ + +    +++     +S      +   +   +     +   L  + D +
Sbjct: 447 VLFDDTQVEQRIVVNELPQVEQTNTLLSQQNEEALRVALETQLRDTQAQRFSLRQVRDIQ 506

Query: 233 -----------NTPMFDKSSSIPLPETIVVLQKIG-----EVLAHSTEVISIRGHTDASP 276
                      +   F+  S+   PE    L KIG      +      VI I GHTDA  
Sbjct: 507 QVRALAPEVELDALRFETGSAAIQPEQARALAKIGTAITGAIRNDPRTVILIEGHTDA-- 564

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
             N    N  LS  RA +    L +   V    +    G+    LK+ S     ANRR
Sbjct: 565 VGNEGY-NLALSDRRAETVALALTEYFDVPPANLI-TQGYGETALKVPSQTAQPANRR 620


>gi|78189654|ref|YP_379992.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Chlorobium chlorochromatii CaD3]
 gi|78171853|gb|ABB28949.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 211

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   S    + +  LQ +   +       ++I  H D+   +     N  L   R
Sbjct: 106 GDILFDFDKSFIRKDAVPQLQDVAAWMKEHPTKNVTIEAHCDS---KGSEAYNIALGKRR 162

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
           A +A   L+  G+  +R+  IS +   +  +    +   + NRR+  +VE
Sbjct: 163 ADAAKAYLVNKGIDSNRLKTIS-YGKDKPLMNGIDESARARNRRVHFVVE 211


>gi|300774087|ref|ZP_07083956.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760258|gb|EFK57085.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 446

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  ++  LP +   L  +  +L    +  + I G+TD +        N +LSLDRA + 
Sbjct: 343 FETGTAKILPASRDQLLNLAAILKVFPDAKVKIGGYTDKT---GDESFNKKLSLDRANAV 399

Query: 296 YQVLMKSGVSEDRISKISGFAH---HRLKIASDPMNSANRRIDILV 338
              L + G+   +++   G+          A +     +RR+ + V
Sbjct: 400 KVFLDEQGL-GAQVAGTEGYGSEIARYPADAPESDRIKDRRVSVSV 444


>gi|119775227|ref|YP_927967.1| OmpA/MotB [Shewanella amazonensis SB2B]
 gi|119767727|gb|ABM00298.1| OmpA/MotB [Shewanella amazonensis SB2B]
          Length = 289

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   +     +   L ++ E L+   +V  I I  +TD+   RN+   N ++S  RA S
Sbjct: 184 YESGGTELTRFSKAQLARVQEYLSLDPDVELILINAYTDSHGGRNL---NQKVSDKRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
                +  G+  DRI +  G    R   ++        NRR+ I +
Sbjct: 241 VKDFFVSKGIPADRI-QTEGHGETRHVASNQGADERQRNRRVVIQI 285


>gi|308270508|emb|CBX27120.1| hypothetical protein N47_A11490 [uncultured Desulfobacterium sp.]
          Length = 200

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISI 268
            + +  +       + I      +  ++ K  ++  P++  ++  I + +    +  I++
Sbjct: 72  KLEQKTIDTLFSEALSIQPKQPFHFILYFKKDTLLTPDSNKLIPDIIKSIQERNSTDITV 131

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPM 327
            GHTD          N  LS  RA S   +L+  GV  + I+  S G  +  +K   +  
Sbjct: 132 VGHTDTL---GSKDYNMALSRKRADSVKDLLIDQGVEANNINTTSHGKENPLIKTEDNVS 188

Query: 328 NSANRRIDILV 338
              NRR++++V
Sbjct: 189 EPGNRRVEVIV 199


>gi|262199615|ref|YP_003270824.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262082962|gb|ACY18931.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 342

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
           L+ ++      +F +S       +  V+  + ++L       I I GH D     +   D
Sbjct: 213 LVELVPAPRALLFRRSGDALRTRSEAVVDHLADLLERHPSVRIVIVGHVDPGELDDEDAD 272

Query: 284 NWR-LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILVED 340
               LSL RA +  + L++ GVS  R+      A   L   +S    + NRR+ + V  
Sbjct: 273 AEHTLSLRRAETVREALIRRGVSVRRLEVWDAAAEFPLSEGSSSHERARNRRVTVRVLR 331


>gi|169795057|ref|YP_001712850.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii AYE]
 gi|260556541|ref|ZP_05828759.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC
           19606]
 gi|332851095|ref|ZP_08433204.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6013150]
 gi|332869632|ref|ZP_08438843.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6013113]
 gi|332875985|ref|ZP_08443771.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6014059]
 gi|169147984|emb|CAM85847.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii AYE]
 gi|260409800|gb|EEX03100.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC
           19606]
 gi|322509070|gb|ADX04524.1| pal [Acinetobacter baumannii 1656-2]
 gi|323519051|gb|ADX93432.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332730259|gb|EGJ61584.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6013150]
 gi|332732679|gb|EGJ63911.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6013113]
 gi|332735851|gb|EGJ66892.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii
           6014059]
          Length = 191

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 83  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ SGV+  ++  +S +            ++   NRR++I
Sbjct: 140 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181


>gi|114771339|ref|ZP_01448759.1| OmpA domain protein [alpha proteobacterium HTCC2255]
 gi|114548264|gb|EAU51151.1| OmpA domain protein [alpha proteobacterium HTCC2255]
          Length = 618

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+    I   + + V++ I +VL    E    I+GHTD+         N  LS  RA + 
Sbjct: 503 FEPGKVIINDDNLTVIKSIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L+   V    IS   G+          ++     NRRI+I + 
Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLL 604


>gi|91210052|ref|YP_540038.1| outer membrane protein A [Escherichia coli UTI89]
 gi|237707059|ref|ZP_04537540.1| outer membrane protein A [Escherichia sp. 3_2_53FAA]
 gi|91071626|gb|ABE06507.1| outer membrane protein A precursor [Escherichia coli UTI89]
 gi|226898269|gb|EEH84528.1| outer membrane protein A [Escherichia sp. 3_2_53FAA]
          Length = 375

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 247 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 303

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362

Query: 338 VE 339
           V+
Sbjct: 363 VK 364


>gi|297184220|gb|ADI20338.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 618

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+    I   + + V++ I +VL    E    I+GHTD+         N  LS  RA + 
Sbjct: 503 FEPGKVIINDDNLTVIKSIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339
              L+   V    IS   G+          ++     NRRI+I + 
Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLL 604


>gi|83943232|ref|ZP_00955692.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp.
           EE-36]
 gi|83846240|gb|EAP84117.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp.
           EE-36]
          Length = 665

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTP 235
           P  + +   +  ++  + L   + + L G  A       + +  +   +   I  + +  
Sbjct: 496 PQVRPQANTLASQQNEEALRAALQTQLRGDQAQRYSLRQVRDVRQVRALAPEI--ELDAV 553

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLD 290
            F   S+   PE    L KIG  ++++ +     VI + GHTDA    N    N  LS  
Sbjct: 554 RFATGSAAIQPEQARALSKIGTAISNAIKDDPRTVILVEGHTDA--VGNAGY-NLALSDR 610

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           RA +    L +   V    +    G+    LK+ ++    ANRR
Sbjct: 611 RAETVALALTEYFDVPPANLI-TQGYGESALKVPTETAEPANRR 653


>gi|269105139|ref|ZP_06157833.1| lipoprotein precursor OmpA family [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160589|gb|EEZ39088.1| lipoprotein precursor OmpA family [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 210

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +  D+       L  ++         FE   +   I   D      F+  +S     +I 
Sbjct: 64  QQYDIVDVDKELLKNILGKMNSGEKCFEYLLSNASIERDDTTARVYFNFDNSKLTSASIY 123

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L K+ E +  S     I GHTD+         N  L   RA S  +  + +GV+  ++ 
Sbjct: 124 ILNKLIENVKASKSNYLIEGHTDSV---GTTSYNKDLGYRRAKSVIEFFVGNGVNRSQLQ 180

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDI 336
            IS     +    +D     S NRR++I
Sbjct: 181 GIS-EGELKPLETNDTSIGRSYNRRVEI 207


>gi|126665979|ref|ZP_01736959.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
 gi|126629301|gb|EAZ99918.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
          Length = 305

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           Q +  +F  +S          L K+   VLA ST   + + GHTD    R    DN +L+
Sbjct: 182 QGSQILFSSASVALSDADRRSLDKVVVYVLADSTVTKVLVDGHTDR---RGSRIDNRKLA 238

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            DRA +    L   GV E RI+ +      +   + +P  + NRR+ I   +R+G
Sbjct: 239 QDRADAVAGYLKSQGVEESRIT-VRAHGD-QFAASGNP--AQNRRVVIR-MEREG 288


>gi|324009900|gb|EGB79119.1| outer membrane protein A [Escherichia coli MS 57-2]
          Length = 354

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|198275312|ref|ZP_03207843.1| hypothetical protein BACPLE_01473 [Bacteroides plebeius DSM 17135]
 gi|198271895|gb|EDY96165.1| hypothetical protein BACPLE_01473 [Bacteroides plebeius DSM 17135]
          Length = 238

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 266 ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           ++I G+TD + ++N   +     N  LS +RA S    L+  G S  +I  ++G      
Sbjct: 143 VAIYGYTDNTGWKNSTAEQSRQKNLDLSQERAQSVSSYLLACGASSSQIKSVTGMGEENP 202

Query: 321 KIASDPMNSA--NRRIDI 336
              +        NRR+++
Sbjct: 203 VADNSTAAGRQENRRVEV 220


>gi|149773177|dbj|BAF64763.1| outer membrane protein A [Shewanella livingstonensis]
          Length = 385

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                +F   S+     +   L+K+ + L       +S++GH         A  N +LS 
Sbjct: 268 DLGGILFANDSAEIRAGSFADLEKLADHLTKYPQHTVSVQGHASNV---GKAEYNMKLSE 324

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            RA +    L  K G+S  RIS + G+   +  +  +S   N  NRRI+ +V
Sbjct: 325 RRAVAVASALNKKYGISISRISSV-GYGVTKPVMQGSSAEANRVNRRIEAIV 375


>gi|89075158|ref|ZP_01161594.1| putative outer membrane protein [Photobacterium sp. SKA34]
 gi|89049112|gb|EAR54678.1| putative outer membrane protein [Photobacterium sp. SKA34]
          Length = 196

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SS      +  +  + E L    +  I ++G+  ASP  N A +   LS  RA  
Sbjct: 76  LFANDSSEIPESYMENISNMSEFLTKYPKTHIELKGY--ASPVGNTAYNV-ELSKRRAAV 132

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343
             Q L+  G+   RI  I GF       ASD    N+ +RR+   V   QG
Sbjct: 133 IRQALITEGIVPSRIKTI-GFGDSDPVKASDVEESNALSRRVVAQVVGSQG 182


>gi|114564063|ref|YP_751577.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114335356|gb|ABI72738.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 376

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                +F   S+     +   L+K+ + L       +S++GH         A  N +LS 
Sbjct: 259 DLGGILFANDSAEIRAGSFADLEKLADHLTKYPQHTVSVQGHASNV---GKAEYNMKLSE 315

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            RA +    L  K G+S  RIS + G+   +  +  +S   N  NRRI+ +V
Sbjct: 316 RRAVAVASALNKKYGISISRISSV-GYGVTKPVMQGSSAEANRVNRRIEAIV 366


>gi|281178081|dbj|BAI54411.1| outer membrane protein OmpA [Escherichia coli SE15]
 gi|323190770|gb|EFZ76039.1| outer membrane protein A [Escherichia coli RN587/1]
          Length = 350

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|163869125|ref|YP_001610364.1| peptidoglycan-associated lipoprotein [Bartonella tribocorum CIP
           105476]
 gi|161018811|emb|CAK02369.1| peptidoglycan-associated lipoprotein [Bartonella tribocorum CIP
           105476]
          Length = 172

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS    +   +L +  E L H     I I GH D    R     N  L   R
Sbjct: 62  DRVFFSLDSSSLDADAERILTRQAEWLLHYPYYSIMIEGHADE---RGTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GVS  RI  IS +   R     D ++  + NRR
Sbjct: 119 AVAVRNYLVSLGVSAQRIQTIS-YGKERPVAVCDDISCWNQNRR 161


>gi|262393713|ref|YP_003285567.1| sodium-type flagellar protein MotY [Vibrio sp. Ex25]
 gi|1550618|dbj|BAA12313.1| component of sodium-driven polar flagellar motor [Vibrio
           alginolyticus]
 gi|262337307|gb|ACY51102.1| sodium-type flagellar protein MotY precursor [Vibrio sp. Ex25]
          Length = 293

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 187 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292


>gi|269965970|ref|ZP_06180062.1| sodium-type flagellar protein MotY [Vibrio alginolyticus 40B]
 gi|269829366|gb|EEZ83608.1| sodium-type flagellar protein MotY [Vibrio alginolyticus 40B]
          Length = 293

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 187 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292


>gi|168237123|ref|ZP_02662181.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734413|ref|YP_002114070.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194709915|gb|ACF89136.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289811|gb|EDY29172.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322616444|gb|EFY13353.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619695|gb|EFY16570.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622609|gb|EFY19454.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629758|gb|EFY26533.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632520|gb|EFY29266.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636985|gb|EFY33688.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641475|gb|EFY38113.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646058|gb|EFY42574.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649640|gb|EFY46071.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654059|gb|EFY50382.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658591|gb|EFY54853.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663448|gb|EFY59650.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670184|gb|EFY66324.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671420|gb|EFY67542.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676776|gb|EFY72843.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682700|gb|EFY78719.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686380|gb|EFY82362.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195127|gb|EFZ80309.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199809|gb|EFZ84898.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202802|gb|EFZ87838.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209073|gb|EFZ94010.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213664|gb|EFZ98452.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217967|gb|EGA02682.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221999|gb|EGA06386.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226572|gb|EGA10777.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229768|gb|EGA13891.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232993|gb|EGA17089.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240728|gb|EGA24770.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243044|gb|EGA27065.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249793|gb|EGA33695.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252735|gb|EGA36573.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259149|gb|EGA42793.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259972|gb|EGA43600.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268028|gb|EGA51507.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269876|gb|EGA53325.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 369

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 241 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356

Query: 338 VE 339
           V+
Sbjct: 357 VK 358


>gi|312945470|gb|ADR26297.1| outer membrane protein A [Escherichia coli O83:H1 str. NRG 857C]
          Length = 365

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352

Query: 338 VE 339
           V+
Sbjct: 353 VK 354


>gi|298208185|ref|YP_003716364.1| hypothetical protein CA2559_08086 [Croceibacter atlanticus
           HTCC2559]
 gi|83848106|gb|EAP85976.1| hypothetical protein CA2559_08086 [Croceibacter atlanticus
           HTCC2559]
          Length = 366

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 71/209 (33%), Gaps = 30/209 (14%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD----- 194
           +     S +  +E+     K    E +   EE       +  K + +K     ++     
Sbjct: 165 ANDASTSSSPVAEQAGSYTKRVVTEPARVVEEEVPAEYATITKTVLVKDAGTTEETVAAK 224

Query: 195 ---LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
              + K++     GL     V   L E T   I+ ++            S+         
Sbjct: 225 YKTVTKEVLKQKGGLTTWAEVDCKLLEYTDLNIVWNL-----------GSASLTNAAKAE 273

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +      +      + I  HTD+   R  A  N  LS  RA +    L+  G++  +I+ 
Sbjct: 274 IDAKLLPVMQQGVSVEIASHTDS---RGTASSNQALSERRAQAVTNYLISKGINSSKITS 330

Query: 312 ISGFAHHRLKIA-------SDPMNSANRR 333
            +G+   +L+         ++  ++ NRR
Sbjct: 331 -NGYGESKLRNRCADGVSCTEREHTLNRR 358


>gi|315287600|gb|EFU47006.1| outer membrane protein A [Escherichia coli MS 110-3]
          Length = 354

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|311280760|ref|YP_003942991.1| SmpA/OmlA domain-containing protein [Enterobacter cloacae SCF1]
 gi|308749955|gb|ADO49707.1| SmpA/OmlA domain-containing protein [Enterobacter cloacae SCF1]
          Length = 265

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLA--HSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
            +F   S+         L+++   +   H     + I GH D     N  ++N  LSL R
Sbjct: 153 SLFGFGSATLSRTGETELRRMIAQIQEQHIPVKRVLITGHAD--RIGNSEKNN-ALSLAR 209

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS------ANRRIDILVED 340
           A +   +L+  G+ E  + +  G    +  +    +   +       NRRI I + +
Sbjct: 210 AEAVKTLLVAQGIPEA-LVETRGVGASQPLVVCPGETTPAVVACLEKNRRITINILE 265


>gi|306812596|ref|ZP_07446789.1| outer membrane protein A [Escherichia coli NC101]
 gi|305853359|gb|EFM53798.1| outer membrane protein A [Escherichia coli NC101]
          Length = 365

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352

Query: 338 VE 339
           V+
Sbjct: 353 VK 354


>gi|229522237|ref|ZP_04411653.1| protein F-related protein [Vibrio cholerae TM 11079-80]
 gi|229340222|gb|EEO05228.1| protein F-related protein [Vibrio cholerae TM 11079-80]
          Length = 204

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FEIGSAKVSMASKQWLDTVARFLAAESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V+++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|220905238|ref|YP_002480550.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869537|gb|ACL49872.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 331

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S     + + +L +   ++  +    + + G TD   +      N +LS +RA S 
Sbjct: 231 FAFNSYALDGKAMGILNEAAGLIKANPNKRVVLAGWTD---WIGSDAYNMKLSQERANSV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L+K G+   R++ I      +    +    + NRR +I
Sbjct: 288 KNYLVKQGIPASRMTAIGRGKSFKYNNETAEGRAMNRRTEI 328


>gi|298506340|gb|ADI85063.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens
           KN400]
          Length = 187

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  + +       +L    E L  +  V  I  GHTD    R     N  L   RA SA
Sbjct: 85  FDFDAWVLNGAAREILAGNAEWLRKNPGVAVILEGHTDE---RGSDAYNLALGEQRAKSA 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            + L   G+   R++ +S +   +  +    +   + NRR++ +
Sbjct: 142 MKYLQTLGIDAGRMTVVS-YGEEKPAVEGHDESAWAGNRRVEFI 184


>gi|254516702|ref|ZP_05128761.1| OmpA/MotB [gamma proteobacterium NOR5-3]
 gi|219675125|gb|EED31492.1| OmpA/MotB [gamma proteobacterium NOR5-3]
          Length = 177

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   P     +     +L  +   + + GHTD    R     N  L   RA +  
Sbjct: 79  FEFDSSTLTPAAQAAVDAHIALLKTNDRSVRLDGHTDE---RGTRDYNMALGERRANAVR 135

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             ++ +GV+  RI  +S +   +     + +   S NRR+++
Sbjct: 136 DYMVVNGVASYRIETVS-YGEEQPVAYGSGESSWSQNRRVEL 176


>gi|319954672|ref|YP_004165939.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319423332|gb|ADV50441.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 638

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD           + L+K+  VL       I I  HTDA   R     N +LS +RA + 
Sbjct: 529 FDYDKYDITVRAEIELEKVLFVLREFPAIKIKIESHTDA---RGKDAYNLKLSDNRAKAT 585

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
              L+  G+  +RI   +G+  ++LK         S+  +  NRR D ++  +
Sbjct: 586 RDYLILKGIVANRIESANGYGEYQLKNECSNGVSCSEQKHLINRRSDFIIISK 638


>gi|294676839|ref|YP_003577454.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294475659|gb|ADE85047.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 334

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 85/271 (31%), Gaps = 52/271 (19%)

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           D+ +    V   +       +       +       Q E  K ++           +  +
Sbjct: 45  DKEVVPRPVHETVVQERDSARQDVERLLLSIARLQAQIEDLKQTVATK------DARIAE 98

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           LE+ + +           E   A   K R  ++ ++++S +   +A   ++G+       
Sbjct: 99  LERQLAEALEKLKQRDPLEAYSARSTKAR-HEMIERLASAVKEDIAREKIEGLDVSAQGD 157

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHST------------------ 263
            +         + +F          ++ +++ +G  L                       
Sbjct: 158 ALRFQ-----GSGLFASGQGGLSGNSLRIIRLLGAHLEGQLPCFTVGPRGAIAASCNPDL 212

Query: 264 ---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-------------VLMKSGVSED 307
              E + + GHTDA         N  LS+ RA SA+              +L    +   
Sbjct: 213 VLIETVQVEGHTDADA---SQASNLTLSMLRATSAFNAIAPDAAQDDAPPMLAFQNLLGQ 269

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDI 336
            +  ++G+   R    +D     +ANRRID+
Sbjct: 270 PVLAVAGYGEMRPIGPNDSPEGKAANRRIDL 300


>gi|254477082|ref|ZP_05090468.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214031325|gb|EEB72160.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 331

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  +     +    L  +   L  +TE  I + GHTD          N  +S  RA + 
Sbjct: 227 FETGAVELGAKPYDSLVALSSFLQDNTEFDILLVGHTDTV---GSLDQNIAISERRADAV 283

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             ++L  S V   RI  ++G  +     ++       ANRR+++++  R
Sbjct: 284 RRRLLEDSTVDRARI-AVAGAGYMAPLTSNQTPAGREANRRVEVVLIPR 331


>gi|260712903|ref|YP_003226958.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIB
           11163]
 gi|258553429|gb|ACV76374.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 273

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 45/174 (25%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   +   +    ++G+   T    +           +F          ++ +++ +G  
Sbjct: 73  LVEAVRADIKKEKIEGLEVSTQGDALRFQ-----GNGLFASGQGGLSGNSLRIIKLLGHH 127

Query: 259 LAH----------------------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           LA                         E + + GHTD++      ++N  LS  RA SA+
Sbjct: 128 LADFMPCFAVGSKGAVALSCNPDLVMLETVQVEGHTDSN---GSHQNNLVLSTTRAISAF 184

Query: 297 -------------QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                        ++L    +    I  ++G+   R    +      +ANRRID
Sbjct: 185 NEIVPDSKNNDMPEMLEFQNLLGQPIMAVAGYGEMRPVGNNATAVGRAANRRID 238


>gi|332519438|ref|ZP_08395905.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045286|gb|EGI81479.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 289

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
           +PL E   +L  I  + + +   +SI G TD    R     N  LS +RA +  ++    
Sbjct: 34  VPLTEENRLLLFISSLDSININKVSIYGFTDD---RGTNEYNLELSQNRANTIKELFSGY 90

Query: 303 GVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338
           GV  + I+ ++G     LK+ ++         NR+++I+V
Sbjct: 91  GVDPNLITNVNGKGEILLKVLNEEEVHQIRGLNRKVEIIV 130



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 22/185 (11%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK---GVLFETTR 221
           K +N+EE + +  L+++  + +  +   +   KK    +     D+  K    +   + +
Sbjct: 109 KVLNEEEVHQIRGLNRKVEIIVNEQLATKKTTKKDKEAIVAKEDDDKEKTTEDIKSGSIK 168

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT-------D 273
            G  I +    +   F  S S    ++   L+K+ ++L        +I+GH        D
Sbjct: 169 KGDKIRL----DKIYFKTSYSYVTSDSKKTLEKLAKILVEKDNLYFTIQGHVCCTQNSRD 224

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           A   +   R+   LS+ RA   Y  L + GV + R+  + G    +  +  DP     RR
Sbjct: 225 AVDKKTKKRN---LSVSRAKYIYDYLARKGVDKRRMKYV-GM-RRKFPLGGDPKYD--RR 277

Query: 334 IDILV 338
           ++ILV
Sbjct: 278 VEILV 282


>gi|158422404|ref|YP_001523696.1| OmpA family protein [Azorhizobium caulinodans ORS 571]
 gi|158329293|dbj|BAF86778.1| OmpA family protein [Azorhizobium caulinodans ORS 571]
          Length = 199

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+I LP++   +  I + L +         + G+TD +        N +LS +RA 
Sbjct: 89  FKLNSAIILPDSYATIGAIADALHNPVLQGYRFIVTGNTDTT---GTREHNLKLSQERAD 145

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  + L  +  V+  R+  + G     L+   +P +  NRR+ I 
Sbjct: 146 AVVEALTTTFNVNPARLEAV-GLGEEALQDTKNPESPVNRRVQIF 189


>gi|129142|sp|P24755|OMPA_SEROD RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II
 gi|152839|gb|AAA26561.1| outer membrane protein II [Serratia odorifera]
          Length = 243

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDN 284
           +   ++  +F+ + S   PE    L ++   L+        + + G+TD  P       N
Sbjct: 119 LFTLKSDVLFNSAKSSLKPEGQQALDQLYTQLSSMDPKDGSVVVLGYTD--PV-GKDAAN 175

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRIS--------KIS---GFAHHRLKIASDPMNSANRR 333
            +LS  RA S    L+  G+  D+IS        +++   G+ + R   A     + NRR
Sbjct: 176 QKLSEARARSVVDYLVSKGIPADKISARGMGEADQVTDSCGYKNGRATKAQIECLAPNRR 235

Query: 334 IDILVE 339
           ++I V+
Sbjct: 236 VEIEVK 241


>gi|332307349|ref|YP_004435200.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174678|gb|AEE23932.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 287

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S+     +   L  IG+ L   +++  + + G++D+   R++   N  LS+ RA      
Sbjct: 187 STDLTKYSQRRLNMIGQYLKEDSDMELVLLDGYSDSYGGRDM---NKTLSVSRAVEIKNY 243

Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336
             + GV+  RI  ++G    R     +++   + NRR+ I
Sbjct: 244 FSEMGVAPQRIE-VTGHGERRHIAPNSNEMSRAKNRRVVI 282


>gi|226952116|ref|ZP_03822580.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp.
           ATCC 27244]
 gi|294648350|ref|ZP_06725858.1| peptidoglycan-associated lipoprotein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837144|gb|EEH69527.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp.
           ATCC 27244]
 gi|292825762|gb|EFF84457.1| peptidoglycan-associated lipoprotein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 187

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 79  FDYDSSELSNEDYQTLQAHAQFLVANANSRVALTGHTDE---RGTREYNMALGERRAKAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +             +   NRR++I
Sbjct: 136 ESFLVTNGVNPQQLEAVS-YGKEAPVNPGHNEAAWKENRRVEI 177


>gi|218700524|ref|YP_002408153.1| outer membrane protein A [Escherichia coli IAI39]
 gi|331646217|ref|ZP_08347320.1| outer membrane protein A [Escherichia coli M605]
 gi|218370510|emb|CAR18317.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli IAI39]
 gi|331044969|gb|EGI17096.1| outer membrane protein A [Escherichia coli M605]
          Length = 374

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 246 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 302

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361

Query: 338 VE 339
           V+
Sbjct: 362 VK 363


>gi|307718765|ref|YP_003874297.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
 gi|306532490|gb|ADN02024.1| OmpA family protein [Spirochaeta thermophila DSM 6192]
          Length = 1337

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 249  IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSG 303
              +++++ ++   +    I I GH  A       R+       LSL RA +  Q L+  G
Sbjct: 1241 RAIIERLVQIFTKYRRYKIRIEGH--AVNLSGTEREEREELVPLSLARAEAVKQALVAMG 1298

Query: 304  VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
            +   RI+  +G       +    +     NRR++ ++ 
Sbjct: 1299 LDPGRIT-TAGMGGRFPIVPHTDEKNRWKNRRVEFILL 1335


>gi|28898885|ref|NP_798490.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus RIMD
           2210633]
 gi|1170999|sp|P46233|MOTY_VIBPA RecName: Full=Sodium-type flagellar protein motY; Flags: Precursor
 gi|497129|gb|AAA21574.1| MotY [Vibrio parahaemolyticus]
 gi|28807104|dbj|BAC60374.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus RIMD
           2210633]
 gi|328474556|gb|EGF45361.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus 10329]
          Length = 293

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 187 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQS---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRTYFESLGLPEDRI-QVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQ 292


>gi|86148066|ref|ZP_01066367.1| putative outer membrane protein [Vibrio sp. MED222]
 gi|85834126|gb|EAQ52283.1| putative outer membrane protein [Vibrio sp. MED222]
          Length = 203

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT---P 235
            +E  +     +++ DL       +              +    G   +I  +       
Sbjct: 23  QREAYIETPEAEQIADLQDDDKDGVVNARDTCPSTPETSQVDNDGCGETIRAEEVRQLKI 82

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +  + E L  + +  I I+G+  AS   +    N  LS  RA +
Sbjct: 83  LFAHDSFEVNPIFSSQISTMAEFLENYKSASIEIQGY--ASKVGSNEY-NLDLSKKRANN 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRID 335
               L+ +G+  +R+ +I G+   RL+    DP + + NR++ 
Sbjct: 140 VQDELLSNGIEPERV-RIVGYGEERLENDGDDPTSHALNRKVT 181


>gi|26246978|ref|NP_753018.1| outer membrane protein A [Escherichia coli CFT073]
 gi|26107378|gb|AAN79561.1|AE016758_165 Outer membrane protein A precursor [Escherichia coli CFT073]
          Length = 379

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 251 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 307

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 308 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 366

Query: 338 VE 339
           V+
Sbjct: 367 VK 368


>gi|260431107|ref|ZP_05785078.1| peptidoglycan-associated lipoprotein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414935|gb|EEX08194.1| peptidoglycan-associated lipoprotein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 167

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E   +LQ   + +LA++    +I GH D          N  L   R
Sbjct: 57  DRVLFAVDQSTLSSEAQSILQGQADWLLANTDYTATIEGHADEQ---GTREYNLALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+ +R+  +S +   R     +++   S NRR
Sbjct: 114 ANAAREFLISRGVAGNRLQTVS-YGKERPIEICSTEECYSKNRR 156


>gi|170681860|ref|YP_001744213.1| outer membrane protein A [Escherichia coli SMS-3-5]
 gi|170519578|gb|ACB17756.1| outer membrane protein A [Escherichia coli SMS-3-5]
          Length = 358

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|332093647|gb|EGI98705.1| outer membrane protein A [Shigella boydii 3594-74]
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|331641486|ref|ZP_08342621.1| outer membrane protein A [Escherichia coli H736]
 gi|331038284|gb|EGI10504.1| outer membrane protein A [Escherichia coli H736]
          Length = 370

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 242 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 298

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357

Query: 338 VE 339
           V+
Sbjct: 358 VK 359


>gi|323967204|gb|EGB62628.1| OmpA transmembrane domain-containing protein [Escherichia coli
           M863]
 gi|323976664|gb|EGB71752.1| OmpA transmembrane domain-containing protein [Escherichia coli
           TW10509]
 gi|327253749|gb|EGE65378.1| outer membrane protein A [Escherichia coli STEC_7v]
          Length = 350

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|323462898|pdb|3NB3|A Chain A, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
           At Specific Sites In The Shigella Phage Sf6 Virion As
           Structural Components
 gi|323462899|pdb|3NB3|B Chain B, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
           At Specific Sites In The Shigella Phage Sf6 Virion As
           Structural Components
 gi|323462900|pdb|3NB3|C Chain C, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
           At Specific Sites In The Shigella Phage Sf6 Virion As
           Structural Components
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|320192555|gb|EFW67196.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202354|gb|EFW76925.1| Outer membrane protein A precursor [Escherichia coli EC4100B]
 gi|323165436|gb|EFZ51223.1| outer membrane protein A [Shigella sonnei 53G]
          Length = 337

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 209 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 265

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 266 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 324

Query: 338 VE 339
           V+
Sbjct: 325 VK 326


>gi|315619153|gb|EFU99733.1| outer membrane protein A [Escherichia coli 3431]
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|309701236|emb|CBJ00536.1| outer membrane protein A [Escherichia coli ETEC H10407]
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|170020642|ref|YP_001725596.1| outer membrane protein A [Escherichia coli ATCC 8739]
 gi|256023341|ref|ZP_05437206.1| outer membrane protein A [Escherichia sp. 4_1_40B]
 gi|307137587|ref|ZP_07496943.1| outer membrane protein A [Escherichia coli H736]
 gi|169755570|gb|ACA78269.1| OmpA domain protein transmembrane region-containing protein
           [Escherichia coli ATCC 8739]
 gi|320637825|gb|EFX07617.1| outer membrane protein A [Escherichia coli O157:H7 str. G5101]
 gi|320642950|gb|EFX12151.1| outer membrane protein A [Escherichia coli O157:H- str. 493-89]
 gi|320653723|gb|EFX21797.1| outer membrane protein A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
          Length = 365

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 237 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352

Query: 338 VE 339
           V+
Sbjct: 353 VK 354


>gi|38000008|gb|AAP74760.2| outer membrane protein A precursor [Shigella flexneri 2a]
          Length = 327

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 199 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 255

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 256 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 314

Query: 338 VE 339
           V+
Sbjct: 315 VK 316


>gi|82776247|ref|YP_402596.1| outer membrane protein A [Shigella dysenteriae Sd197]
 gi|81240395|gb|ABB61105.1| outer membrane protein 3a [Shigella dysenteriae Sd197]
          Length = 350

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|51235578|gb|AAT98590.1| outer membrane protein A [Escherichia coli]
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|30062494|ref|NP_836665.1| outer membrane protein A [Shigella flexneri 2a str. 2457T]
 gi|56479781|ref|NP_706879.2| outer membrane protein A [Shigella flexneri 2a str. 301]
 gi|82544719|ref|YP_408666.1| outer membrane protein A [Shigella boydii Sb227]
 gi|30040740|gb|AAP16471.1| outer membrane protein 3a (II*;G;d) [Shigella flexneri 2a str.
           2457T]
 gi|56383332|gb|AAN42586.2| outer membrane protein 3a (II*;G;d) [Shigella flexneri 2a str. 301]
 gi|81246130|gb|ABB66838.1| outer membrane protein 3a [Shigella boydii Sb227]
 gi|313650796|gb|EFS15197.1| outer membrane protein A [Shigella flexneri 2a str. 2457T]
 gi|332759051|gb|EGJ89361.1| outer membrane protein A [Shigella flexneri 4343-70]
 gi|332759932|gb|EGJ90233.1| outer membrane protein A [Shigella flexneri 2747-71]
 gi|332762738|gb|EGJ93001.1| outer membrane protein A [Shigella flexneri K-671]
 gi|332767750|gb|EGJ97941.1| outer membrane protein 3a [Shigella flexneri 2930-71]
 gi|333001202|gb|EGK20770.1| outer membrane protein A [Shigella flexneri VA-6]
 gi|333006193|gb|EGK25702.1| outer membrane protein A [Shigella flexneri K-218]
 gi|333008941|gb|EGK28401.1| outer membrane protein A [Shigella flexneri K-272]
 gi|333020097|gb|EGK39368.1| outer membrane protein A [Shigella flexneri K-304]
 gi|333020253|gb|EGK39523.1| outer membrane protein A [Shigella flexneri K-227]
          Length = 348

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 220 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 276

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 277 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 335

Query: 338 VE 339
           V+
Sbjct: 336 VK 337


>gi|309786688|ref|ZP_07681308.1| outer membrane protein A [Shigella dysenteriae 1617]
 gi|129143|sp|P02935|OMPA_SHIDY RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II; Flags: Precursor
 gi|46945|emb|CAA24638.1| unnamed protein product [Shigella dysenteriae]
 gi|308925381|gb|EFP70868.1| outer membrane protein A [Shigella dysenteriae 1617]
          Length = 351

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|15800816|ref|NP_286832.1| outer membrane protein A [Escherichia coli O157:H7 EDL933]
 gi|15830295|ref|NP_309068.1| outer membrane protein A [Escherichia coli O157:H7 str. Sakai]
 gi|16128924|ref|NP_415477.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12
           substr. MG1655]
 gi|74311514|ref|YP_309933.1| outer membrane protein A [Shigella sonnei Ss046]
 gi|89107807|ref|AP_001587.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12
           substr. W3110]
 gi|157160478|ref|YP_001457796.1| outer membrane protein A [Escherichia coli HS]
 gi|170080615|ref|YP_001729935.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12
           substr. DH10B]
 gi|187730326|ref|YP_001880845.1| outer membrane protein A [Shigella boydii CDC 3083-94]
 gi|188493530|ref|ZP_03000800.1| outer membrane protein P5 [Escherichia coli 53638]
 gi|209918209|ref|YP_002292293.1| outer membrane protein A [Escherichia coli SE11]
 gi|218694432|ref|YP_002402099.1| outer membrane protein A [Escherichia coli 55989]
 gi|238900215|ref|YP_002926011.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BW2952]
 gi|253774014|ref|YP_003036845.1| outer membrane protein A [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161071|ref|YP_003044179.1| outer membrane protein A [Escherichia coli B str. REL606]
 gi|254792157|ref|YP_003076994.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14359]
 gi|260843206|ref|YP_003220984.1| outer membrane protein A [Escherichia coli O103:H2 str. 12009]
 gi|260854249|ref|YP_003228140.1| outer membrane protein A [Escherichia coli O26:H11 str. 11368]
 gi|260867129|ref|YP_003233531.1| outer membrane protein A [Escherichia coli O111:H- str. 11128]
 gi|261227460|ref|ZP_05941741.1| outer membrane protein A [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256117|ref|ZP_05948650.1| outer membrane protein A [Escherichia coli O157:H7 str. FRIK966]
 gi|307311656|ref|ZP_07591296.1| OmpA domain protein transmembrane region-containing protein
           [Escherichia coli W]
 gi|312971089|ref|ZP_07785268.1| outer membrane protein A [Escherichia coli 1827-70]
 gi|71159604|sp|P0A911|OMPA_ECO57 RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II*; Flags: Precursor
 gi|71159605|sp|P0A910|OMPA_ECOLI RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II*; Flags: Precursor
 gi|12514142|gb|AAG55443.1|AE005286_2 outer membrane protein 3a (II*;G;d) [Escherichia coli O157:H7 str.
           EDL933]
 gi|42161|emb|CAA23588.1| ompA protein [Escherichia coli]
 gi|1651465|dbj|BAA35715.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K12
           substr. W3110]
 gi|1787191|gb|AAC74043.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360501|dbj|BAB34464.1| outer membrane protein 3a [Escherichia coli O157:H7 str. Sakai]
 gi|32329155|gb|AAP74759.1| outer membrane protein A precursor [Shigella sonnei]
 gi|73854991|gb|AAZ87698.1| outer membrane protein 3a (II*;G;d) [Shigella sonnei Ss046]
 gi|157066158|gb|ABV05413.1| outer membrane protein A [Escherichia coli HS]
 gi|169888450|gb|ACB02157.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12
           substr. DH10B]
 gi|187427318|gb|ACD06592.1| outer membrane protein A [Shigella boydii CDC 3083-94]
 gi|188488729|gb|EDU63832.1| outer membrane protein P5 [Escherichia coli 53638]
 gi|209774438|gb|ACI85531.1| outer membrane protein 3a [Escherichia coli]
 gi|209774440|gb|ACI85532.1| outer membrane protein 3a [Escherichia coli]
 gi|209774442|gb|ACI85533.1| outer membrane protein 3a [Escherichia coli]
 gi|209774444|gb|ACI85534.1| outer membrane protein 3a [Escherichia coli]
 gi|209774446|gb|ACI85535.1| outer membrane protein 3a [Escherichia coli]
 gi|209911468|dbj|BAG76542.1| outer membrane protein OmpA [Escherichia coli SE11]
 gi|218351164|emb|CAU96868.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli 55989]
 gi|238861958|gb|ACR63956.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BW2952]
 gi|242376772|emb|CAQ31485.1| outer membrane protein 3a (II*;G;d) [Escherichia coli BL21(DE3)]
 gi|253325058|gb|ACT29660.1| OmpA domain protein transmembrane region-containing protein
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972972|gb|ACT38643.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli B str.
           REL606]
 gi|253977186|gb|ACT42856.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BL21(DE3)]
 gi|254591557|gb|ACT70918.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli O157:H7
           str. TW14359]
 gi|257752898|dbj|BAI24400.1| outer membrane protein A [Escherichia coli O26:H11 str. 11368]
 gi|257758353|dbj|BAI29850.1| outer membrane protein A [Escherichia coli O103:H2 str. 12009]
 gi|257763485|dbj|BAI34980.1| outer membrane protein A [Escherichia coli O111:H- str. 11128]
 gi|260449897|gb|ACX40319.1| OmpA domain protein transmembrane region-containing protein
           [Escherichia coli DH1]
 gi|306908211|gb|EFN38710.1| OmpA domain protein transmembrane region-containing protein
           [Escherichia coli W]
 gi|310336850|gb|EFQ02017.1| outer membrane protein A [Escherichia coli 1827-70]
 gi|315060242|gb|ADT74569.1| outer membrane protein A [Escherichia coli W]
 gi|315135605|dbj|BAJ42764.1| OmpA domain protein transmembrane region-containing protein
           precursor [Escherichia coli DH1]
 gi|320648407|gb|EFX17062.1| outer membrane protein A [Escherichia coli O157:H- str. H 2687]
 gi|320659566|gb|EFX27129.1| outer membrane protein A [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664337|gb|EFX31488.1| outer membrane protein A [Escherichia coli O157:H7 str. LSU-61]
 gi|323157149|gb|EFZ43272.1| outer membrane protein A [Escherichia coli EPECa14]
 gi|323159587|gb|EFZ45567.1| outer membrane protein A [Escherichia coli E128010]
 gi|323174936|gb|EFZ60551.1| outer membrane protein A [Escherichia coli LT-68]
 gi|323175416|gb|EFZ61011.1| outer membrane protein A [Escherichia coli 1180]
 gi|323185333|gb|EFZ70697.1| outer membrane protein A [Escherichia coli 1357]
 gi|323379198|gb|ADX51466.1| OmpA/MotB domain protein [Escherichia coli KO11]
 gi|323938062|gb|EGB34324.1| OmpA transmembrane domain-containing protein [Escherichia coli
           E1520]
 gi|323942872|gb|EGB39037.1| OmpA transmembrane domain-containing protein [Escherichia coli
           E482]
 gi|323947254|gb|EGB43262.1| OmpA transmembrane domain-containing protein [Escherichia coli
           H120]
 gi|323962843|gb|EGB58418.1| OmpA transmembrane domain-containing protein [Escherichia coli
           H489]
 gi|323973167|gb|EGB68359.1| OmpA transmembrane domain-containing protein [Escherichia coli
           TA007]
 gi|324117179|gb|EGC11087.1| OmpA transmembrane domain-containing protein [Escherichia coli
           E1167]
          Length = 346

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|299769114|ref|YP_003731140.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. DR1]
 gi|298699202|gb|ADI89767.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. DR1]
          Length = 186

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 78  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A    ++   NRR++I
Sbjct: 135 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 176


>gi|109897724|ref|YP_660979.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109700005|gb|ABG39925.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 287

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S+     +   L  IG+ L   +++  + + G++D+   R++   N  LS+ RA      
Sbjct: 187 STELTKYSQRRLNMIGQYLKEDSDMELVLLDGYSDSYGGRDM---NKTLSVSRAVEIKNY 243

Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336
               GV+  RI  ++G    R      ++   + NRR+ I
Sbjct: 244 FSDMGVAPQRIE-VTGHGERRHIAPNTNEMSRAKNRRVVI 282


>gi|300982950|ref|ZP_07176384.1| outer membrane protein A [Escherichia coli MS 200-1]
 gi|300307039|gb|EFJ61559.1| outer membrane protein A [Escherichia coli MS 200-1]
 gi|315296266|gb|EFU55573.1| outer membrane protein A [Escherichia coli MS 16-3]
 gi|324012909|gb|EGB82128.1| outer membrane protein A [Escherichia coli MS 60-1]
          Length = 354

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|161520074|ref|YP_001583501.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|160344124|gb|ABX17209.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
          Length = 277

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F KSS    LP     L   I ++ A   T  I + GHTD          N  LS  RA 
Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDESNRALSRARAE 221

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338
           +  + L+  G+   RI +  G    +      P  S         +RR+ I V
Sbjct: 222 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 273


>gi|114320611|ref|YP_742294.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227005|gb|ABI56804.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 324

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F    +         L +            VI   GHTD+      A  N RL   RA +
Sbjct: 221 FGFDHAGLTRTAKDALARFANQAGDDPHLQVIVAVGHTDS---AGPADYNERLGARRAEA 277

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
               LM+ G++++RI ++      +  +A D     +ANRR+++
Sbjct: 278 VRAELMRRGIADERI-RLRSLGERQPAMAEDDGYGRAANRRVEV 320


>gi|218677868|ref|ZP_03525765.1| putative outer membrane protein, OmpA family [Rhizobium etli CIAT
           894]
          Length = 145

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V   I +VL         I GHTDA       + N  LS  R
Sbjct: 30  FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GTDQSNLVLSDQR 86

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 87  AESVANVLSDVYGIPPENL-ATQGYGERYLKVNTSGPEQENRRVTI 131


>gi|85705227|ref|ZP_01036326.1| OmpA family protein [Roseovarius sp. 217]
 gi|85670100|gb|EAQ24962.1| OmpA family protein [Roseovarius sp. 217]
          Length = 191

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   SS         L++  +     +   +I GHTD+   R     N  LSL RA S 
Sbjct: 93  LFATDSSRIGASGQQRLREFFQQANAVSY--TIVGHTDS---RASDEYNMGLSLRRANSV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
               +  G+    I+ + G+     K +++     + NRR++IL
Sbjct: 148 AA--VARGIGAS-IADVRGYGERMPKASNNTAEGMAQNRRVEIL 188


>gi|220923055|ref|YP_002498357.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219947662|gb|ACL58054.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 192

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +SS      +  +  +G  LA        I I GHTD    +   R N RLS  RA 
Sbjct: 81  FDFNSSRIGDAALPQVSTLGSSLARPELRDSTILIVGHTDG---KGSDRVNQRLSERRAE 137

Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +  Q ++++  V    +  + G+   RLK++++P  +ANRR+ 
Sbjct: 138 AVKQYIVRNYDVPGANLISV-GYGKSRLKVSNNPYAAANRRVT 179


>gi|315185632|gb|EFU19400.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578]
          Length = 1337

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 249  IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSG 303
              +++++ ++   +    I I GH  A       R+       LSL RA +  Q L+  G
Sbjct: 1241 RAIIERLVQIFTKYRRYKIRIEGH--AVNLSGTEREEREELVPLSLARAEAVKQALVAMG 1298

Query: 304  VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
            +   RI+  +G       +    +     NRR++ ++ 
Sbjct: 1299 LDPGRIT-TAGMGGRFPIVPHTDEKNRWKNRRVEFILL 1335


>gi|300819200|ref|ZP_07099401.1| outer membrane protein A [Escherichia coli MS 107-1]
 gi|300528219|gb|EFK49281.1| outer membrane protein A [Escherichia coli MS 107-1]
          Length = 353

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 225 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 281

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 282 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 340

Query: 338 VE 339
           V+
Sbjct: 341 VK 342


>gi|330889603|gb|EGH22264.1| OmpA family protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 381

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +               +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +    + + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|149277661|ref|ZP_01883801.1| possible outer membrane protein [Pedobacter sp. BAL39]
 gi|149231349|gb|EDM36728.1| possible outer membrane protein [Pedobacter sp. BAL39]
          Length = 174

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S +    +  +L ++  E+    T    + G++ A         N  LS+DRA S 
Sbjct: 73  FEFNSDVLKTASFEILDQVVREMKKDLTVGFVLNGNSSAE---GSVEHNLSLSVDRANSV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
              L+ +G+    +  I GF   +    +D     + NRR++I
Sbjct: 130 KSYLVNAGIPAANL-SIKGFGATKPITTNDSEEGRALNRRVEI 171


>gi|157159269|ref|YP_001462189.1| outer membrane protein A [Escherichia coli E24377A]
 gi|331667340|ref|ZP_08368205.1| outer membrane protein A [Escherichia coli TA271]
 gi|51235576|gb|AAT98589.1| outer membrane protein A [Escherichia coli]
 gi|157081299|gb|ABV21007.1| outer membrane protein A [Escherichia coli E24377A]
 gi|331065696|gb|EGI37589.1| outer membrane protein A [Escherichia coli TA271]
          Length = 350

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|39937736|ref|NP_950012.1| outer membrane protein OprF [Rhodopseudomonas palustris CGA009]
 gi|39651596|emb|CAE30118.1| possible outer membrane protein OprF (AF117972) [Rhodopseudomonas
           palustris CGA009]
          Length = 216

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+    +    ++ +G+ L+          + GHTD+         N  LS  RA 
Sbjct: 106 FEYNSANISRQAAPAVEALGKALSSPDLKGGTFVVAGHTDSV---GSDSFNQDLSERRAD 162

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  +VL++  G++   +  + G+   RLK  + P +  NRR+ ++    Q
Sbjct: 163 TIKRVLVEKYGIAGADLVTV-GYGESRLKDPAHPDSGINRRVQVVNMSDQ 211


>gi|88810551|ref|ZP_01125808.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
 gi|88792181|gb|EAR23291.1| OmpA/MotB [Nitrococcus mobilis Nb-231]
          Length = 147

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S++   E + +L+  GE L+      ++I GHTD    R     N  L   RA + 
Sbjct: 45  FDFDSNVVKSEYMPILKAHGEYLSTHPENQVTIEGHTDE---RGSREYNLALGERRAKAV 101

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
            ++L  +G ++++IS +S +   +         +   NRR  I+
Sbjct: 102 QRILELNGAAKEQISTVS-YGEEKPLDPGHTEAALTKNRRALIV 144


>gi|332342400|gb|AEE55734.1| outer membrane protein OmpA [Escherichia coli UMNK88]
          Length = 350

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|325279496|ref|YP_004252038.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311305|gb|ADY31858.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 782

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 34/134 (25%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     PE    L+++  +L  +  + I +  HTD          N  LS  RA + 
Sbjct: 544 FDVAKWELRPEARQNLEELLTILEDNPNITIELSAHTD---MVGNDEANRILSEHRARAV 600

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------------------- 330
              L+  GV  DR+    G+   + +  ++                              
Sbjct: 601 VDYLIGKGVYWDRLEA-KGYGETQPRQINEKDAREYPFFKVGEVLNERFFGRLRGEQRET 659

Query: 331 ----NRRIDILVED 340
               NRRI+  V  
Sbjct: 660 ALQLNRRIEFKVLR 673


>gi|227884084|ref|ZP_04001889.1| OOP family OmpA-OmpF porin [Escherichia coli 83972]
 gi|300978356|ref|ZP_07174229.1| outer membrane protein A [Escherichia coli MS 45-1]
 gi|301047785|ref|ZP_07194839.1| outer membrane protein A [Escherichia coli MS 185-1]
 gi|227838836|gb|EEJ49302.1| OOP family OmpA-OmpF porin [Escherichia coli 83972]
 gi|300300348|gb|EFJ56733.1| outer membrane protein A [Escherichia coli MS 185-1]
 gi|300409701|gb|EFJ93239.1| outer membrane protein A [Escherichia coli MS 45-1]
 gi|315291176|gb|EFU50536.1| outer membrane protein A [Escherichia coli MS 153-1]
          Length = 358

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|227539888|ref|ZP_03969937.1| OmpA/MotB [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240166|gb|EEI90181.1| OmpA/MotB [Sphingobacterium spiritivorum ATCC 33300]
          Length = 446

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 95/311 (30%), Gaps = 45/311 (14%)

Query: 53  IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
           I N  +++            G     +     D Q+P   +     D+ + E        
Sbjct: 154 ISNLLNENKSNFAAALPAGLGLGAFGSLFADSDIQSPAVETPIPPADIPVVEPPVLTVPP 213

Query: 113 LKIGSTNQKKQYQRLENNIFY--------------LSNSQQSEHCKNSLTRDSEKGKDLC 158
           +        ++  R                         +         +  +  G+D  
Sbjct: 214 VNPEPAIHTREAVREVKKSSGLWWILIPLVLVALWFLFGKSCAGNGAGTSDSTSNGRDTS 273

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-------DNI 211
             T+   S+   +        +  IL +   + L+   + I   L   +        D+ 
Sbjct: 274 SMTNPSDSLGATDGL---SNRESVILKLPDGQELRAYPRGIEDNLIKFLQSDYKALPDDT 330

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           +K   F+           D  N   F+  ++  LP +   L  +  +L    +  + I G
Sbjct: 331 LKNKWFD----------FDNLN---FETGTAKILPASRDQLLNLAAILKVFPDAKVKIGG 377

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRLKIASDPM 327
           +TD +        N +LSLDRA +    L + G+   +++   G+          A +  
Sbjct: 378 YTDKT---GDEAFNKKLSLDRANAVKVFLDEQGL-GAQVAGTEGYGSEIARYPADAPESD 433

Query: 328 NSANRRIDILV 338
              +RR+ + V
Sbjct: 434 RIKDRRVSVSV 444


>gi|323492706|ref|ZP_08097850.1| outer membrane protein [Vibrio brasiliensis LMG 20546]
 gi|323313081|gb|EGA66201.1| outer membrane protein [Vibrio brasiliensis LMG 20546]
          Length = 279

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 21/165 (12%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSS 242
           ++KRL +L  ++    S       +    F+       ++IID+  + +     F  +S+
Sbjct: 111 QRKRLNELELQLDYVTSQAKCVPPMDENAFQQ-----RLAIIDKLYSLLNVDNQFAFNST 165

Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
              P+ +  L +   +L  HS+  +++ GH D+    ++A  N +L++ RA    + L+ 
Sbjct: 166 EVNPKYMGHLARAANLLEQHSSLSLAVTGHADS--VGDLAY-NQKLAMGRAQQVKRYLII 222

Query: 302 SGVSEDRI--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            G+S +RI    +            +       NRR+ I V D Q
Sbjct: 223 FGLSPERIKTHSV---GDTLPLYEGESEGVRLTNRRVSIEVIDNQ 264


>gi|293414237|ref|ZP_06656886.1| OOP family OmpA-OmpF porin [Escherichia coli B185]
 gi|291434295|gb|EFF07268.1| OOP family OmpA-OmpF porin [Escherichia coli B185]
          Length = 350

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|218709831|ref|YP_002417452.1| putative outer membrane protein [Vibrio splendidus LGP32]
 gi|218322850|emb|CAV19027.1| putative outer membrane protein [Vibrio splendidus LGP32]
          Length = 211

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +  + E L  + +  I I+G+  AS   +    N  LS  RA +
Sbjct: 91  LFAHDSFEVNPIFSSQISTMAEFLENYKSASIEIQGY--ASKVGSNEY-NLDLSKKRANN 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRID 335
               L+ +G+  +R+ +I G+   RL+    DP + + NR++ 
Sbjct: 148 VQDELLSNGIEPERV-RIVGYGEERLENDGDDPTSHALNRKVT 189


>gi|158422149|ref|YP_001523441.1| OmpA/MotB precursor [Azorhizobium caulinodans ORS 571]
 gi|158329038|dbj|BAF86523.1| OmpA/MotB precursor [Azorhizobium caulinodans ORS 571]
          Length = 164

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   +   PE   +L +  + L        +I GH D    R     N  L   R
Sbjct: 56  DRVFFDTDQTDLSPEARAILDRQAQWLQQYNRYTFTIEGHADE---RGTREYNIALGAKR 112

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 113 AQNVRDYLASRGIDPARMRTIS-YGKERPVAVCNDISCWSQNRR 155


>gi|148975972|ref|ZP_01812761.1| Conserved hypothetical outer membrane protein [Vibrionales
           bacterium SWAT-3]
 gi|145964717|gb|EDK29970.1| Conserved hypothetical outer membrane protein [Vibrionales
           bacterium SWAT-3]
          Length = 211

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            L ++++    +L + ++   S  +     K  +    R G+L  I        F     
Sbjct: 56  ALQIEQQSDSNELKQALARQSSLGINKTGCKTWISSQDRHGLLARIH-------FAFDQH 108

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              P     L ++   L  S   +++ GHTD+         N  L + RA +    L+  
Sbjct: 109 SLTPMGSKALSQLASELQTSGSSVTVDGHTDS---SGDEGYNQALGMQRALTTSDALIVD 165

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           GV +  +  I  F   +   +++     + NRR +I
Sbjct: 166 GVDKHHLV-IRSFGESKPIASNETVEGRANNRRAEI 200


>gi|296101384|ref|YP_003611530.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055843|gb|ADF60581.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 313

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 16/198 (8%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           +GK         +S         P  S     A++ + R + L  K+       + +   
Sbjct: 121 QGKQNPLQQLNAESAQTYFIQVNPGTSG-NTAALEERSRAEALLSKMHKQ--TKIINRAS 177

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRG 270
           +    +      ++ I +Q        +++    E+   L ++ +    +  V  I I G
Sbjct: 178 QVKTCDYINNSGVVLIQEQVLFRFAASNAAGIFAESRNKLDEVVKFTKKANNVSEIQIVG 237

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-----IASD 325
           +TDA         N RLS  RA +   +L++ G+  + I+  +G    +        AS 
Sbjct: 238 YTDAI---GSREANQRLSEARADTVRSLLIEKGIKPELINNTTGKGIAQSAEGCGTSASQ 294

Query: 326 PMNSAN---RRIDILVED 340
                N   RR++ILV+ 
Sbjct: 295 QAAGCNVNSRRVEILVKS 312


>gi|126173146|ref|YP_001049295.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125996351|gb|ABN60426.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 485

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  S   LPE+  VL+ +   L         +  HTD    +     N  LS  RA +
Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQHPTLSFYVVEHTDD---KGERSYNQSLSERRAAA 434

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
             + L     +   +++   G   +       +D     NRR+++++   +
Sbjct: 435 VIKQLSDGFQIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484


>gi|169632713|ref|YP_001706449.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii SDF]
 gi|169151505|emb|CAP00268.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii]
          Length = 191

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 83  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ SGV+  ++  +S +            ++   NRR++I
Sbjct: 140 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181


>gi|315180802|gb|ADT87716.1| sodium-type flagellar protein MotY [Vibrio furnissii NCTC 11218]
          Length = 294

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +D+  S      +   L +I E + ++ ++  + +  +TD++  RN ++    LS  RA 
Sbjct: 187 YDRGDSVELNKASQKRLAQIAEYIRYNPDIDLVLVSTYTDSTDGRNESQS---LSDKRAE 243

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S  +     G+  DRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 SLQKYFESLGLPSDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|78484705|ref|YP_390630.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78362991|gb|ABB40956.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +S+ G+TD      ++  R+NW LS  RA +  + L +S   +     ++G+  +R   +
Sbjct: 139 VSVAGYTDDDQIDPQSPLRNNWFLSTMRAQNVMKSLYQSSELKQSQFGVTGYGKYRPVAS 198

Query: 324 SDP--MNSANRRIDILV 338
           ++     + NRR+ +++
Sbjct: 199 NETREGKAKNRRVQVMI 215



 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 70/194 (36%), Gaps = 2/194 (1%)

Query: 32  SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91
           SW   + D +T+L+ FF++M ++N  +    +   +         +T      +  +   
Sbjct: 11  SWLFSFGDLVTLLITFFIMMIVLNKGEISQVQKWAESQLDTAYAQLTTQMADAEYVSLSR 70

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            ++   +++S  E   K   +L     ++  Q  +   ++      +           D+
Sbjct: 71  TANGISVNISHPEAFVKGGYNLSSALESELTQLGKALQSLKIFHLERSDVPIHILRIADA 130

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVAD 209
           +      + +    + + + +   P  +   +  M+ +  ++ L +  ++  +  G+   
Sbjct: 131 DSLSWRSEVSVAGYTDDDQIDPQSPLRNNWFLSTMRAQNVMKSLYQSSELKQSQFGVTGY 190

Query: 210 NIVKGVLFETTRTG 223
              + V    TR G
Sbjct: 191 GKYRPVASNETREG 204


>gi|332186615|ref|ZP_08388358.1| ompA family protein [Sphingomonas sp. S17]
 gi|332013267|gb|EGI55329.1| ompA family protein [Sphingomonas sp. S17]
          Length = 220

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+    E     Q     L       +   I GHTD    R  AR N  LS  RA 
Sbjct: 118 FELNSARLSAEGTRAAQVFARSLLMPELKDKRFLIEGHTD---LRGGARINGPLSTARAK 174

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +    L+  GV   R+    GF            +  NRR++
Sbjct: 175 AVADYLVTLGVDRSRLE-TRGFGSAMPLPGHSKADPVNRRVE 215


>gi|323135988|ref|ZP_08071071.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322399079|gb|EFY01598.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 341

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F + S+    +    L K   ++    +V I +RGH D         DN  LS+ R
Sbjct: 241 DRVEFREGSAAITRQAAEALDKAVALIRRCPDVTIEVRGHADD--------DNEALSVRR 292

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           A +  + L + G+   R+  ++G   HR + A   +++ 
Sbjct: 293 AQAVARYLRREGLGGRRVV-VAGHGAHRARTAKAELDAR 330


>gi|239815674|ref|YP_002944584.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110]
 gi|239802251|gb|ACS19318.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110]
          Length = 172

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   ++      L  +    +SI GHTD    R     N  L   R+ + 
Sbjct: 70  FDYDSYTVKPEFQSLIDGHARFLKANPQRRVSIEGHTDD---RGGREYNLALGQKRSEAV 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GVS+ +I  +S F   +  +  + +   + NRR +I
Sbjct: 127 RRALTLLGVSDAQIEAVS-FGKEKPAVQGSGEEAWAQNRRAEI 168


>gi|218553544|ref|YP_002386457.1| outer membrane protein A [Escherichia coli IAI1]
 gi|331676747|ref|ZP_08377443.1| outer membrane protein A [Escherichia coli H591]
 gi|218360312|emb|CAQ97862.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli IAI1]
 gi|331075436|gb|EGI46734.1| outer membrane protein A [Escherichia coli H591]
          Length = 374

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 246 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 302

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361

Query: 338 VE 339
           V+
Sbjct: 362 VK 363


>gi|120436709|ref|YP_862395.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
 gi|117578859|emb|CAL67328.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
          Length = 536

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
             +  +FD   +    +    L  I   +    E+ I IR HTD+   R   + N +LS 
Sbjct: 412 DLDPILFDLDKAEIESKAARQLDHIAAYMQEYPELLIDIRSHTDS---RADDKYNIKLSQ 468

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           +R     Q L+  GV  +RIS   G+    L           +  ++ NRR + ++
Sbjct: 469 NRVAVTRQYLVNMGVDGNRISG-RGYGETELVNNCRNKIPCPEDAHAINRRSEFIL 523


>gi|254443045|ref|ZP_05056521.1| OmpA family protein [Verrucomicrobiae bacterium DG1235]
 gi|198257353|gb|EDY81661.1| OmpA family protein [Verrucomicrobiae bacterium DG1235]
          Length = 512

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++   PE +  ++++ ++L +  +  I + GHT A   R  A  N +LS +RA S 
Sbjct: 403 FQSGTAGLSPEGVSSIEEMVDILQNYPDFRILVAGHTSA---RGDAEANRQLSEERARSV 459

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRL-KIASDPMNS-ANR--RID 335
            + L+    + EDR+  +       L ++A +   +  NR  R++
Sbjct: 460 AKYLVDHYAIDEDRVRAVGVGGEQPLRRLAGESYRAHQNRLSRVE 504


>gi|331651979|ref|ZP_08352998.1| outer membrane protein A (Outer membrane protein II) [Escherichia
           coli M718]
 gi|331050257|gb|EGI22315.1| outer membrane protein A (Outer membrane protein II) [Escherichia
           coli M718]
          Length = 375

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 247 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 303

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362

Query: 338 VE 339
           V+
Sbjct: 363 VK 364


>gi|304395220|ref|ZP_07377104.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304357473|gb|EFM21836.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 157

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  + S   P +   +Q + + LA +  E + I GHTD          N +LSL R
Sbjct: 49  DKILFGVNESELTPSSKSNIQGMAKNLASTGIEHVRIDGHTDNY---GKPDYNQQLSLKR 105

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338
           A +        G S  R + ++ G        +++     + NRR+ I++
Sbjct: 106 ANAVAAQ-WAEGASIPRGNIVTRGLGMSAPVTSNNSAQGRAQNRRVAIVI 154


>gi|119383439|ref|YP_914495.1| OmpA domain-containing protein [Paracoccus denitrificans PD1222]
 gi|119373206|gb|ABL68799.1| OmpA domain protein [Paracoccus denitrificans PD1222]
          Length = 173

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +T +F    S   PE  V+L      L  +    + I GH D          N  L   R
Sbjct: 63  DTVLFPLDQSTLTPEARVILANQAGWLNQNAGFAAVIEGHADEQ---GTREYNLALGARR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A S  + L+  G++  R+  +S +   R     +++   + NRR
Sbjct: 120 ANSVQEYLISQGIAPGRLRTVS-YGKERPLAICSTEECFTKNRR 162


>gi|332279861|ref|ZP_08392274.1| outer membrane protein A [Shigella sp. D9]
 gi|332102213|gb|EGJ05559.1| outer membrane protein A [Shigella sp. D9]
          Length = 374

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 246 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 302

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361

Query: 338 VE 339
           V+
Sbjct: 362 VK 363


>gi|238055498|sp|B7LNW7|OMPA_ESCF3 RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II; Flags: Precursor
          Length = 351

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|110804972|ref|YP_688492.1| outer membrane protein A [Shigella flexneri 5 str. 8401]
 gi|110614520|gb|ABF03187.1| outer membrane protein 3a [Shigella flexneri 5 str. 8401]
          Length = 348

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 220 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 276

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA S    L+  G+  D+IS   G         +   N           + +RR++I 
Sbjct: 277 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKRRAALIDCLAPDRRVEIE 335

Query: 338 VE 339
           V+
Sbjct: 336 VK 337


>gi|323492355|ref|ZP_08097508.1| sodium-type flagellar protein MotY precursor [Vibrio brasiliensis
           LMG 20546]
 gi|323313402|gb|EGA66513.1| sodium-type flagellar protein MotY precursor [Vibrio brasiliensis
           LMG 20546]
          Length = 293

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S     ++   L +I E + H+ ++  + +  +TDA   ++ ++    LS  RA  
Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIKHNQDIDLVLVSTYTDAEDSKSASQS---LSERRAEV 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +     G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LQEYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292


>gi|319427140|gb|ADV55214.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 197

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
            + +    +   +++   GHTD          N++LSL RA +  ++L++  G + +R +
Sbjct: 109 ALVKAFLEANNDVALILVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 165

Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
            +  G +       S      NRR+  +V ++
Sbjct: 166 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 197


>gi|189010293|ref|ZP_02805910.2| outer membrane protein A [Escherichia coli O157:H7 str. EC4076]
 gi|208815928|ref|ZP_03257107.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4045]
 gi|208822372|ref|ZP_03262691.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4042]
 gi|209397392|ref|YP_002269625.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4115]
 gi|217325746|ref|ZP_03441830.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14588]
 gi|291281957|ref|YP_003498775.1| OmpA domain protein transmembrane region-containing protein
           precursor [Escherichia coli O55:H7 str. CB9615]
 gi|293433254|ref|ZP_06661682.1| OOP family OmpA-OmpF porin [Escherichia coli B088]
 gi|300929657|ref|ZP_07145117.1| outer membrane protein A [Escherichia coli MS 187-1]
 gi|300949672|ref|ZP_07163655.1| outer membrane protein A [Escherichia coli MS 116-1]
 gi|300955388|ref|ZP_07167765.1| outer membrane protein A [Escherichia coli MS 175-1]
 gi|301022508|ref|ZP_07186383.1| outer membrane protein A [Escherichia coli MS 196-1]
 gi|301643481|ref|ZP_07243528.1| outer membrane protein A [Escherichia coli MS 146-1]
 gi|189001311|gb|EDU70297.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4076]
 gi|208732576|gb|EDZ81264.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4045]
 gi|208737857|gb|EDZ85540.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4042]
 gi|209158792|gb|ACI36225.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4115]
 gi|217321967|gb|EEC30391.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14588]
 gi|290761830|gb|ADD55791.1| OmpA domain protein transmembrane region-containing protein
           precursor [Escherichia coli O55:H7 str. CB9615]
 gi|291324073|gb|EFE63495.1| OOP family OmpA-OmpF porin [Escherichia coli B088]
 gi|299881205|gb|EFI89416.1| outer membrane protein A [Escherichia coli MS 196-1]
 gi|300317723|gb|EFJ67507.1| outer membrane protein A [Escherichia coli MS 175-1]
 gi|300450941|gb|EFK14561.1| outer membrane protein A [Escherichia coli MS 116-1]
 gi|300462395|gb|EFK25888.1| outer membrane protein A [Escherichia coli MS 187-1]
 gi|301078120|gb|EFK92926.1| outer membrane protein A [Escherichia coli MS 146-1]
 gi|320187167|gb|EFW61868.1| Outer membrane protein A precursor [Shigella flexneri CDC 796-83]
 gi|324019104|gb|EGB88323.1| outer membrane protein A [Escherichia coli MS 117-3]
 gi|326338147|gb|EGD61976.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str.
           1125]
          Length = 354

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|170725642|ref|YP_001759668.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810989|gb|ACA85573.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 367

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS+   E+   ++K+   +    +  + I GH         A  N  LS  RA + 
Sbjct: 256 FANNSSVVKNESYQQIEKLANYMNQHPKSTVLISGHASDV---GKAEYNMMLSDKRANAV 312

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            ++L++  G+++DR+    GF   +  I  +S   N ANRRI+
Sbjct: 313 AKILVEKYGIAQDRVEA-KGFGITQPIIEGSSPAANKANRRIE 354


>gi|120598160|ref|YP_962734.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120558253|gb|ABM24180.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1]
          Length = 196

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
            + +    +   +++   GHTD          N++LSL RA +  ++L++  G + +R +
Sbjct: 108 ALVKAFLEANNDVALLLVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 164

Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
            +  G +       S      NRR+  +V ++
Sbjct: 165 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 196


>gi|146293768|ref|YP_001184192.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145565458|gb|ABP76393.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32]
          Length = 196

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
            + +    +   +++   GHTD          N++LSL RA +  ++L++  G + +R +
Sbjct: 108 ALVKAFLEANNDVALILVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 164

Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
            +  G +       S      NRR+  +V ++
Sbjct: 165 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 196


>gi|315605392|ref|ZP_07880435.1| OmpA family protein [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312961|gb|EFU61035.1| OmpA family protein [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 184

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S         +L  +  E        +S+ GHTD+         N  LS  RA + 
Sbjct: 83  FEVDSDQLTARAREILDSLASEWSKTKPSKVSVTGHTDSVA---DDAHNLDLSKRRAKAV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
              L  S V    I+   G         +  D   + NRR++I
Sbjct: 140 GDYL-ASKVPGLSIT-TDGKGEAEPIADNETDEGRAQNRRVEI 180


>gi|320196555|gb|EFW71178.1| Outer membrane protein A precursor [Escherichia coli WV_060327]
 gi|330910729|gb|EGH39239.1| outer membrane protein A precursor [Escherichia coli AA86]
          Length = 358

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|312621091|ref|YP_003993819.1| outer membrane protein, ompa/motb family [Photobacterium damselae
           subsp. damselae]
 gi|311872812|emb|CBX86903.1| outer membrane protein, OmpA/MotB family [Photobacterium damselae
           subsp. damselae]
          Length = 210

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +  D+       L  ++         FE   +   I   D      F+  +S     +I 
Sbjct: 64  QQYDIVDVDKELLKNILGKMNSGEKCFEYLLSNASIERDDTTARVYFNFDNSKLTRASIY 123

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           +L K+ E +  S     I GHTD+         N  L   RA S  +  + +GV+  ++ 
Sbjct: 124 ILNKLIENVKASKSNYLIEGHTDSV---GTTSYNKDLGYRRAKSVIEFFVGNGVNRSQLQ 180

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDI 336
            IS     +    +D     S NRR++I
Sbjct: 181 GIS-EGELKPLETNDTSIGRSYNRRVEI 207


>gi|260778741|ref|ZP_05887633.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604905|gb|EEX31200.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 279

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243
           ++KRL +L +++    S        D                +  +D +    F  +S+ 
Sbjct: 111 QRKRLDELERQLDYVTSQAKCVPPHDEFSFQQQLAIIDKLYNLLNVDNQ----FAFNSTE 166

Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+ +  L +   +L  H +  +++ GH D+         N +L++ RA    + L   
Sbjct: 167 VNPKYMGHLAQAANILREHKSLNLTVTGHADSV---GDELQNQQLAMGRAKQVKRYLTIF 223

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342
           G+   RI   S           +       NRR+ I +VE  +
Sbjct: 224 GLEPKRIEAKS-LGESLPLFEGESDGVRLTNRRVSIEVVETNE 265


>gi|326346124|gb|EGD69862.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str.
           1044]
          Length = 273

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 145 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 201

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 202 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 260

Query: 338 VE 339
           V+
Sbjct: 261 VK 262


>gi|288918113|ref|ZP_06412470.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
 gi|288350495|gb|EFC84715.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
          Length = 186

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD  S +  PE    L  I   +      + + G++D          N  LS +RA + 
Sbjct: 89  LFDADSDVLRPEAATALAGIVPQIREHDGKVQVVGYSDGL---GSTEHNLELSRERAVAV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              L    +    + ++          A +  +++ RR++I++
Sbjct: 146 QTYLTSQDIPAA-MLEVVAKGE--AGAADNVADASRRRVEIVL 185


>gi|256018784|ref|ZP_05432649.1| outer membrane protein A [Shigella sp. D9]
          Length = 369

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 241 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 297

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 298 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 356

Query: 338 VE 339
           V+
Sbjct: 357 VK 358


>gi|218548466|ref|YP_002382257.1| outer membrane protein A [Escherichia fergusonii ATCC 35469]
 gi|218356007|emb|CAQ88623.1| outer membrane protein A (3a;II*;G;d) [Escherichia fergusonii ATCC
           35469]
          Length = 375

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 247 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 303

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362

Query: 338 VE 339
           V+
Sbjct: 363 VK 364


>gi|329893686|ref|ZP_08269820.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma
           proteobacterium IMCC3088]
 gi|328923613|gb|EGG30925.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma
           proteobacterium IMCC3088]
          Length = 182

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS        VL K   +L ++   + + GHTD    R     N  L   RA +  
Sbjct: 84  FEFDSSTLTDTGRAVLDKHVALLKNTGASVRLEGHTDE---RGTREYNMALGERRANAVR 140

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             +M  G+   R+  IS F   +     +S+   S NRR++I
Sbjct: 141 DYMMVKGIPGYRLESIS-FGEEKPVSYGSSEVSWSQNRRVEI 181


>gi|260769061|ref|ZP_05877995.1| sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP
           102972]
 gi|260617091|gb|EEX42276.1| sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP
           102972]
          Length = 294

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +D+  S      +   L +I E + ++ ++  + +  +TD++  RN ++    LS  RA 
Sbjct: 187 YDRGDSVELNKASQKRLAQIAEYIRYNPDIDLVLVSTYTDSTDGRNESQS---LSDKRAE 243

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S  +     G+  DRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 SLQKYFESLGLPSDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|209965094|ref|YP_002298009.1| outer membrane lipoprotein omp16 [Rhodospirillum centenum SW]
 gi|209958560|gb|ACI99196.1| outer membrane lipoprotein omp16 [Rhodospirillum centenum SW]
          Length = 163

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F        PE    L +    L     V +++ GH D    R     N  L   R
Sbjct: 58  DRVFFGFDRFDLTPEATATLDRQAAWLKQYPNVTVTVEGHADE---RGTREYNLALGERR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDIL 337
           A +    L   GV   R+  IS        + SD    + NRR + ++
Sbjct: 115 ATAVKNYLTALGVDTARVQTISYGKERPAVLGSDESAWAQNRRGVTVI 162


>gi|146338272|ref|YP_001203320.1| Outer membrane lipoprotein omp16 [Bradyrhizobium sp. ORS278]
 gi|146191078|emb|CAL75083.1| Outer membrane lipoprotein omp16 precursor
           (peptidoglycan-associated lipoprotein) [Bradyrhizobium
           sp. ORS278]
          Length = 149

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L+K  + L        +I GH D    R     N  L   R
Sbjct: 41  DRVFFESDQTDLTPQAIATLEKQAQWLQSYPRYSFTIEGHADE---RGTREYNIALGARR 97

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+ + R+  IS +   R     + ++  S NRR
Sbjct: 98  AQSVRNFLVSRGIDQSRMRTIS-YGKERPVAVCNDISCWSQNRR 140


>gi|291615400|ref|YP_003525557.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291585512|gb|ADE13170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 204

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++  +    E+I ++  I  E+   +   + + GH        +   N  LS+ RA   
Sbjct: 103 FEEDGAKLTAESINMIADIRQEITRRAAPEVVVTGHASR---AGMDETNLSLSMQRAKVV 159

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             VL+  GV   +I ++ G         +    +   +RR++I V
Sbjct: 160 RDVLVAGGVPA-QIIQVVGRGEFDPAATTQDGVAGPPSRRVEITV 203


>gi|221209446|ref|ZP_03582427.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
 gi|221170134|gb|EEE02600.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1]
          Length = 159

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F+ T  G            +FD       P+   ++++IG  L  +  + + + G
Sbjct: 34  LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 90

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD          +  LS  RA      L+  G+   RI  I G   H   +  + M   
Sbjct: 91  YTDDE---GADGYDLELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 145

Query: 328 NSANRRIDILVEDR 341
            + NRR  I+V  R
Sbjct: 146 RAQNRRAAIVVSPR 159


>gi|167624709|ref|YP_001675003.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354731|gb|ABZ77344.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 321

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +F   SS  +  T  + + +  V+A     I I  +TD+         N  LS  RA 
Sbjct: 219 KSLFGFDSSKLVA-TEALAEVLKNVIASKDTEICITAYTDSL---GAKEYNLTLSKQRAE 274

Query: 294 SAYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRRIDI 336
           +     + +GV   RI  +   G A       +    + NRR+ I
Sbjct: 275 ATRSYFISNGVEPSRIH-VDWKGEASPVATNRTAEGRALNRRVKI 318


>gi|331672486|ref|ZP_08373276.1| outer membrane protein A [Escherichia coli TA280]
 gi|331070392|gb|EGI41757.1| outer membrane protein A [Escherichia coli TA280]
          Length = 370

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 242 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 298

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357

Query: 338 VE 339
           V+
Sbjct: 358 VK 359


>gi|331662369|ref|ZP_08363292.1| outer membrane protein A [Escherichia coli TA143]
 gi|331682461|ref|ZP_08383080.1| outer membrane protein A [Escherichia coli H299]
 gi|331060791|gb|EGI32755.1| outer membrane protein A [Escherichia coli TA143]
 gi|331080092|gb|EGI51271.1| outer membrane protein A [Escherichia coli H299]
          Length = 346

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|284920801|emb|CBG33864.1| outer membrane protein A [Escherichia coli 042]
          Length = 350

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|218704380|ref|YP_002411899.1| outer membrane protein A [Escherichia coli UMN026]
 gi|293404256|ref|ZP_06648250.1| outer membrane protein A [Escherichia coli FVEC1412]
 gi|298380040|ref|ZP_06989645.1| outer membrane protein A [Escherichia coli FVEC1302]
 gi|51235574|gb|AAT98588.1| outer membrane protein A [Escherichia coli]
 gi|218431477|emb|CAR12355.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli UMN026]
 gi|291428842|gb|EFF01867.1| outer membrane protein A [Escherichia coli FVEC1412]
 gi|298279738|gb|EFI21246.1| outer membrane protein A [Escherichia coli FVEC1302]
          Length = 346

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|325102858|ref|YP_004272512.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324971706|gb|ADY50690.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 141

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
             P+  V L K+ ++L  +  + I +  HTD+   R     N  LS  RA SA   ++  
Sbjct: 40  IRPDAAVELDKLVKILKDNPTIWIELGSHTDS---RGKDAYNLNLSQKRAESAVGYIVSR 96

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
           G+ ++RI+   G+   +L          ++  +  NRR +  +
Sbjct: 97  GIDKNRIAA-RGYGETQLLNRCSNGVECTEEEHQLNRRTEFKI 138


>gi|238761919|ref|ZP_04622893.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia kristensenii ATCC 33638]
 gi|238700033|gb|EEP92776.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia kristensenii ATCC 33638]
          Length = 169

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           N  +FD          +  +Q IG  L +     + + GHTDA         N +LS +R
Sbjct: 62  NKVLFDSDVRKLNASGVQTVQHIGRALHNVGINHMRVDGHTDAM---GEDGYNQKLSYER 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +    L   G+    I  + G         +      + NRR+ ++V
Sbjct: 119 ASAVADSLAAIGIPRANIE-VHGRGKLEPVADNRTSKGRAENRRVAMIV 166


>gi|158536391|gb|ABW72720.1| outer membrane protein A [Escherichia coli]
 gi|158536395|gb|ABW72722.1| outer membrane protein A [Escherichia coli]
 gi|158536397|gb|ABW72723.1| outer membrane protein A [Escherichia coli]
          Length = 358

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|161520167|ref|YP_001583594.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|160344217|gb|ABX17302.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
          Length = 185

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F+ T  G            +FD       P+   ++++IG  L  +  + + + G
Sbjct: 60  LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 116

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD         D   LS  RA      L+  G+   RI  I G   H   +  + M   
Sbjct: 117 YTDDE--GTDGYD-LELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 171

Query: 328 NSANRRIDILVEDR 341
            + NRR  I+V  R
Sbjct: 172 RAQNRRAAIVVSPR 185


>gi|129138|sp|P24754|OMPA_ESCHE RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II
 gi|146987|gb|AAA24234.1| outer membrane protein II [Escherichia hermannii]
 gi|146995|gb|AAA24238.1| outer membrane protein II [Escherichia hermannii]
          Length = 243

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 124 KSDVLFNFNKATLKPEGQQALDQMYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 180

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 181 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 239

Query: 338 VE 339
           V+
Sbjct: 240 VK 241


>gi|283484404|gb|ADB23432.1| OmpA [Cronobacter sakazakii]
          Length = 347

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 219 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 275

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 276 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 334

Query: 338 VE 339
           V+
Sbjct: 335 VK 336


>gi|197121340|ref|YP_002133291.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|220916043|ref|YP_002491347.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171189|gb|ACG72162.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|219953897|gb|ACL64281.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 170

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 24/153 (15%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K +       G       ++N   F   +    P     ++++   L
Sbjct: 28  KKAAGQATVGKLEKEINRRLLEEG-------RKNQCSFKTDTDQLEPGCDQKMKRLSNAL 80

Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             + + ++          + GHTD       A  N  LS  RA    + L+  G+ +  I
Sbjct: 81  VDAKKRLNGAGVKNFKFVVSGHTDT---SGSAAHNQELSARRAAVIEKELVARGIPQAEI 137

Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILVE 339
             + G    +  +  D      + NRR ++ V+
Sbjct: 138 ESV-GMGSKKPLVKPDDTPAKKAKNRRYELQVK 169


>gi|188584571|ref|YP_001928016.1| peptidoglycan-associated lipoprotein [Methylobacterium populi
           BJ001]
 gi|179348069|gb|ACB83481.1| peptidoglycan-associated lipoprotein [Methylobacterium populi
           BJ001]
          Length = 170

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  S+   P     L K    L         I GH D    R        L   R
Sbjct: 60  DRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS---LGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337
           A +    L   G+S  R+  +S +   R     + ++  S NRR + +L
Sbjct: 117 AQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRAVSVL 164


>gi|126664571|ref|ZP_01735555.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
 gi|126630897|gb|EBA01511.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
          Length = 147

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L + G  L       + + GH+DA  F      ++ LS  RA +  + L++ GV E R
Sbjct: 52  DMLTRHGHYLRRNVHLHVRVHGHSDA--FGTDDYGHF-LSRMRASAVVRFLIEEGVEEQR 108

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  + G+   R   A+   ++ANRR+++
Sbjct: 109 LKAV-GWGSDRPL-ATRADHAANRRVEL 134


>gi|126642630|ref|YP_001085614.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 170

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 62  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 118

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ SGV+  ++  +S +            ++   NRR++I
Sbjct: 119 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 160


>gi|119898879|ref|YP_934092.1| outer membrane protein A [Azoarcus sp. BH72]
 gi|119671292|emb|CAL95205.1| outer membrane protein A precursor [Azoarcus sp. BH72]
          Length = 238

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L  +          + +  GHTD          N +LS  RA +
Sbjct: 124 LFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGHTDRL---GSDSYNQKLSERRAAA 180

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
               L+  GV  +R+    G    +    +   +  N           RR+++ V
Sbjct: 181 VKTYLVSKGVEANRVY-TEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEV 234


>gi|293409335|ref|ZP_06652911.1| outer membrane protein A [Escherichia coli B354]
 gi|291469803|gb|EFF12287.1| outer membrane protein A [Escherichia coli B354]
          Length = 350

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|158536385|gb|ABW72717.1| outer membrane protein A [Escherichia coli]
 gi|158536387|gb|ABW72718.1| outer membrane protein A [Escherichia coli]
 gi|158536389|gb|ABW72719.1| outer membrane protein A [Escherichia coli]
 gi|158536393|gb|ABW72721.1| outer membrane protein A [Escherichia coli]
 gi|158536399|gb|ABW72724.1| outer membrane protein A [Escherichia coli]
 gi|158536401|gb|ABW72725.1| outer membrane protein A [Escherichia coli]
          Length = 358

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|281600319|gb|ADA73303.1| Outer membrane protein A [Shigella flexneri 2002017]
          Length = 356

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 228 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 285 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 343

Query: 338 VE 339
           V+
Sbjct: 344 VK 345


>gi|294670063|ref|ZP_06735018.1| OmpA family protein [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291308146|gb|EFE49389.1| OmpA family protein [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 162

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
             +     +  R G  I ++   N      SS++       +      +  +    ++I 
Sbjct: 21  ESLANTGVDVERNGNQIKLVMPENVTFPTNSSTLNANAQNALAAAAQTLTQYHDTTLTIN 80

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GHTD +        N  LS  RA +    L   GVS  R++ I G    +   ++     
Sbjct: 81  GHTDNT---GSDAINDPLSQRRAQAVASYLQSRGVSASRMN-IFGHGSRQPIASNATVEG 136

Query: 328 NSANRRIDILVEDRQ 342
            + NRR++IL+   Q
Sbjct: 137 RAQNRRVEILINPDQ 151


>gi|119502996|ref|ZP_01625081.1| conserved hypothetical OmpA family protein [marine gamma
           proteobacterium HTCC2080]
 gi|119461342|gb|EAW42432.1| conserved hypothetical OmpA family protein [marine gamma
           proteobacterium HTCC2080]
          Length = 297

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 7/155 (4%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            ++ L +    ++   + L   N    ++ E  +    +++   +   +F  + S     
Sbjct: 131 TEQALLNTQADLALAYTELDKVNADLEIVQEEQQRFAKLALEQLQLEMLFKTNDSRLTAG 190

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               L  +   L  +    + I G+ D    R  +  N  LSL RA    Q L+ SGV+ 
Sbjct: 191 GEDRLSLLASFLTRNENLSVRIEGYADP---RGDSASNMALSLARAERVAQQLIDSGVAA 247

Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
           +R++ +S     +       ++  + +RR+ I ++
Sbjct: 248 NRMT-VSAHGESQALAGDGDIDAYALDRRVHIALD 281


>gi|163749262|ref|ZP_02156511.1| OmpA family protein [Shewanella benthica KT99]
 gi|161330981|gb|EDQ01907.1| OmpA family protein [Shewanella benthica KT99]
          Length = 220

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
           ++      TR+G  I +    N   F        P    VL  +  V     +  ++I G
Sbjct: 92  LQSTGVSVTRSGDNIVLN-MPNEVTFGVDEVHLNPGAKKVLNSVALVAKEYDQTQLNILG 150

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
           +TD+         N RLS  RA      L+   V   R+    G    R   ++      
Sbjct: 151 YTDS---SGSESYNLRLSKIRAIEVGNYLVGQNVEYARVKS-EGIGEARPISSNTTAAGR 206

Query: 329 SANRRIDILV 338
           + NRR++I++
Sbjct: 207 AQNRRVEIIL 216


>gi|37704614|gb|AAR01579.1| OprF [Pseudomonas sp. MFY61]
          Length = 316

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   RI  + G+   R   
Sbjct: 290 KQVLTQQYGVESSRIDSV-GYGETRPVA 316


>gi|170769190|ref|ZP_02903643.1| outer membrane protein A [Escherichia albertii TW07627]
 gi|170121842|gb|EDS90773.1| outer membrane protein A [Escherichia albertii TW07627]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|330807890|ref|YP_004352352.1| hypothetical protein PSEBR_a1170 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375998|gb|AEA67348.1| Conserved hypothetical protein; putative outer membrane protein,
           putative OmpA family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 370

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 16/262 (6%)

Query: 85  DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
           D +      S    D  + +     +         Q K          + S+       K
Sbjct: 25  DAEGGSSWWSFGSSDKVVAKDTAPAAPLKPAAVAPQAKAESATHWWWPFSSDDAADVAKK 84

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKRLQDLAKKISST 202
           + +    +           E   N +  +      +E  K + M   K  Q         
Sbjct: 85  DDVKPQDKPEAKAPAVAKAEAESNGKWWWPFGGKDQETAKAVPMPDPKVTQAWLDDYEPK 144

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS-SIPLPETIVVLQKIGEVLAH 261
           L   + D+ ++            + ++       F+    ++ LP T+    ++ ++L  
Sbjct: 145 LRTAIQDSKLQ------LERRDNVLVVTAPVDGSFNPDRPAMLLPVTLGPFTRVAKILEA 198

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             +  + I GH D       A  N +LS +RA S   +   SG+  DR+  + G      
Sbjct: 199 DPKTAVLILGHADT---SGAAPANLKLSQERAQSVAAIFRLSGLQRDRLM-LRGMGAVAP 254

Query: 321 KIASD--PMNSANRRIDILVED 340
           + A+D     + NRR+++LV  
Sbjct: 255 RAANDSVEGRALNRRVELLVTP 276


>gi|310819072|ref|YP_003951430.1| outer membrane domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392144|gb|ADO69603.1| Outer membrane domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 480

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F + SS   P  + +L ++   L+   +   I I GH D          +  +SL RA +
Sbjct: 364 FVRGSSEL-PGVVPLLDQVILQLSGFSAGGTIVIEGHADTE---GTDTSDMFMSLRRAQA 419

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVED 340
             + L+  GV   ++ +I G   H     K A++  +  NRR ++LV  
Sbjct: 420 VRRYLIDQGVPGTKV-RIRGLGSHWPVSSKPATEQEHQLNRRAEVLVLT 467


>gi|300896337|ref|ZP_07114879.1| outer membrane protein A [Escherichia coli MS 198-1]
 gi|300359748|gb|EFJ75618.1| outer membrane protein A [Escherichia coli MS 198-1]
          Length = 354

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|330448104|ref|ZP_08311752.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492295|dbj|GAA06249.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 352

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     E    L+ I + L +     + + GHTD+   R     N +LS +RA + 
Sbjct: 238 FAFDSDKLTAEDEARLEPIAQRLVNFPNAELVVIGHTDS---RGSEAYNQKLSEERAKTV 294

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              LMK   +   R+ K  G        ++D     + NRR+D+
Sbjct: 295 ALYLMKHFNIDASRV-KGEGRGELDPVASNDTAEGRAQNRRVDV 337


>gi|115372572|ref|ZP_01459880.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370534|gb|EAU69461.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 490

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F + SS   P  + +L ++   L+   +   I I GH D          +  +SL RA +
Sbjct: 374 FVRGSSEL-PGVVPLLDQVILQLSGFSAGGTIVIEGHADTE---GTDTSDMFMSLRRAQA 429

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVED 340
             + L+  GV   ++ +I G   H     K A++  +  NRR ++LV  
Sbjct: 430 VRRYLIDQGVPGTKV-RIRGLGSHWPVSSKPATEQEHQLNRRAEVLVLT 477


>gi|3915781|sp|P24017|OMPA_KLEPN RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II; Flags: Precursor
 gi|3201545|emb|CAA04450.1| outer membrane protein A [Klebsiella pneumoniae]
          Length = 344

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     + A  N +LS
Sbjct: 216 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 272

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 273 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 331

Query: 338 VE 339
           V+
Sbjct: 332 VK 333


>gi|300824154|ref|ZP_07104273.1| outer membrane protein A [Escherichia coli MS 119-7]
 gi|300925361|ref|ZP_07141248.1| outer membrane protein A [Escherichia coli MS 182-1]
 gi|301327213|ref|ZP_07220475.1| outer membrane protein A [Escherichia coli MS 78-1]
 gi|309795053|ref|ZP_07689473.1| outer membrane protein A [Escherichia coli MS 145-7]
 gi|300418528|gb|EFK01839.1| outer membrane protein A [Escherichia coli MS 182-1]
 gi|300523330|gb|EFK44399.1| outer membrane protein A [Escherichia coli MS 119-7]
 gi|300846194|gb|EFK73954.1| outer membrane protein A [Escherichia coli MS 78-1]
 gi|308121357|gb|EFO58619.1| outer membrane protein A [Escherichia coli MS 145-7]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|86137994|ref|ZP_01056570.1| OmpA family protein [Roseobacter sp. MED193]
 gi|85825586|gb|EAQ45785.1| OmpA family protein [Roseobacter sp. MED193]
          Length = 213

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +    E   VL +    +         + GHTDA         N +L L RA SA
Sbjct: 70  FAFNDARLDGEARAVLDRQAAWIKQFPEVRFRVYGHTDAV---GGNSYNKQLGLRRARSA 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  G+   R+  +      +  I +      NRR
Sbjct: 127 VNHLVSRGIDRRRLEAMVSKGESQPLILTQEPERRNRR 164


>gi|262278151|ref|ZP_06055936.1| peptidoglycan-associated lipoprotein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258502|gb|EEY77235.1| peptidoglycan-associated lipoprotein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 190

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 82  FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 138

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A    ++   NRR++I
Sbjct: 139 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 180


>gi|255263704|ref|ZP_05343046.1| OmpA domain protein [Thalassiobium sp. R2A62]
 gi|255106039|gb|EET48713.1| OmpA domain protein [Thalassiobium sp. R2A62]
          Length = 632

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+         + +I E+L   ++  I I G+TD+         N +LS  RA + 
Sbjct: 499 FEPGSANIDAGARSTVDQIAEILQRCTSTKIEIAGYTDSQ---GREVMNQQLSQQRAEAV 555

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
              L    V     + I G+        ++  +    NRRI+
Sbjct: 556 LTALRARRVPTSAFTAI-GYGEESPIADNETEDGREANRRIE 596


>gi|158536383|gb|ABW72716.1| outer membrane protein A [Escherichia coli]
          Length = 354

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|149191257|ref|ZP_01869513.1| outer membrane protein [Vibrio shilonii AK1]
 gi|148834927|gb|EDL51908.1| outer membrane protein [Vibrio shilonii AK1]
          Length = 275

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 17/206 (8%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM-KRKKRLQDLAKKISSTL 203
           +SL  +  +          ++  N+        L  +    +  ++K+L DL  ++   L
Sbjct: 69  DSLIEEGAQWCFPAAVLQAQEKQNRIARELEGGLWIDAANDIVIQRKKLNDLELRLDYVL 128

Query: 204 SGLVADNIVKGV----LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +       +KG     L +  +    +  +D +    F  +S    P+ +  L +   +L
Sbjct: 129 NEATCAPPLKGKDFDDLMQVVKRVYQLLNVDNQ----FAYNSVEVNPKYMGHLAEAANIL 184

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  +S+ GH DA+        N +++  RA    + L   G++  RI   S     
Sbjct: 185 KQHPTIRLSVTGHADAT---GGTEYNEKIAKGRAQQVKRYLTIFGLAPGRIETHS-LGEE 240

Query: 319 RLKIASDPMNSA--NRRIDI-LVEDR 341
                 D       NRR+ I ++ D+
Sbjct: 241 LPLYEGDSPGVRLTNRRVSIEVIADK 266


>gi|297183997|gb|ADI20117.1| outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 613

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+    +   +   V++ I +VL    E    I+GHTD+         N  LS  RA + 
Sbjct: 503 FEPGKVVLNDDNFTVIKLIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              L+   V    IS   G+          ++     NRRI+I + +
Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLVE 605


>gi|229528510|ref|ZP_04417901.1| protein F-related protein [Vibrio cholerae 12129(1)]
 gi|229334872|gb|EEO00358.1| protein F-related protein [Vibrio cholerae 12129(1)]
          Length = 204

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 99  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V ++ I    GF  +     +   N    NRR++I
Sbjct: 156 KAALVQSRVVQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197


>gi|254482517|ref|ZP_05095756.1| peptidoglycan-associated lipoprotein, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214037208|gb|EEB77876.1| peptidoglycan-associated lipoprotein, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 174

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  S    P+ +  L      +  +   + + GHTD    R     N  L   RA +  
Sbjct: 76  FDYDSYNLNPDAVSALDAHISAMQGNEANVRLEGHTDE---RGTREYNMALGERRANAVR 132

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             ++ +GVS  RI  +S +   R     + +   + NRR+++
Sbjct: 133 DYMVVNGVSSYRIETVS-YGEERPIAYGSGESNWAQNRRVEL 173


>gi|193885262|pdb|2ZF8|A Chain A, Crystal Structure Of Moty
          Length = 278

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 166 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 222

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 223 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 271


>gi|16759951|ref|NP_455568.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142277|ref|NP_805619.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|68052784|sp|Q8Z7S0|OMPA_SALTI RecName: Full=Outer membrane protein A; Flags: Precursor
 gi|25298549|pir||AI0626 outer membrane protein A STY1091 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502245|emb|CAD08196.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137907|gb|AAO69468.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 350

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|251792331|ref|YP_003007056.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700]
 gi|247533723|gb|ACS96969.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700]
          Length = 346

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+   VL  I   +A      I + G+TD     + A  N +LS  RA + 
Sbjct: 233 FAFGKANLKPQAQSVLDGIYSEIAQVNNADIKVSGYTD--RIGSDAY-NQKLSQRRAETV 289

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338
              L+  GV+++ IS    G A+       D +            +RR++I V
Sbjct: 290 ANYLVSKGVAQNAISAAGYGKANPVTGTKCDAVKGRKALIACLADDRRVEIAV 342


>gi|84684131|ref|ZP_01012033.1| OmpA domain protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84667884|gb|EAQ14352.1| OmpA domain protein [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS     T   L  +   L       +++ GHTDA         N  +S  RA S 
Sbjct: 210 FETGSSALGDGTYDSLTDLAAYLKSHPTRRVALVGHTDAE---GPLSANIAISKRRATSV 266

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRID-ILVED 340
            + L+ + GV   ++    G  +     ++  D   + NRR++ ILV  
Sbjct: 267 LERLVTAHGVPSSQLEA-EGIGYLSPLASNQSDEGRTFNRRVEAILVTT 314


>gi|186472558|ref|YP_001859900.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194890|gb|ACC72854.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 207

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD ++    P++ V +Q++  VLA      +++ GHTD +   +   D+ RLS+ RA +
Sbjct: 106 LFDSAT-ELAPQSAVTVQQMKAVLATWPAPHLTVVGHTDLA--GSPEYDD-RLSMQRAQT 161

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NSANRRIDILVE 339
             + L+K+G+   +I +   G       + +     N  NRR+ I ++
Sbjct: 162 VAKFLIKAGIPARQIETAARGK--REPLVHTADGVPNQMNRRVVITIQ 207


>gi|16764429|ref|NP_460044.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205352225|ref|YP_002226026.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856415|ref|YP_002243066.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|20141670|sp|P02936|OMPA_SALTY RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane major heat-modifiable protein; AltName:
           Full=Outer membrane protein 33K; Flags: Precursor
 gi|16419585|gb|AAL20003.1| putative membrane component hydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|146760785|gb|ABQ44512.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|205272006|emb|CAR36850.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708218|emb|CAR32518.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246287|emb|CBG24095.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992822|gb|ACY87707.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157614|emb|CBW17106.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|332987964|gb|AEF06947.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 350

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|300902879|ref|ZP_07120825.1| outer membrane protein A [Escherichia coli MS 84-1]
 gi|301302427|ref|ZP_07208558.1| outer membrane protein A [Escherichia coli MS 124-1]
 gi|300405092|gb|EFJ88630.1| outer membrane protein A [Escherichia coli MS 84-1]
 gi|300842266|gb|EFK70026.1| outer membrane protein A [Escherichia coli MS 124-1]
 gi|315258005|gb|EFU37973.1| outer membrane protein A [Escherichia coli MS 85-1]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|212704357|ref|ZP_03312485.1| hypothetical protein DESPIG_02412 [Desulfovibrio piger ATCC 29098]
 gi|212672216|gb|EEB32699.1| hypothetical protein DESPIG_02412 [Desulfovibrio piger ATCC 29098]
          Length = 331

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     + + +L +   ++       I + G TD+   R     N +LS +RA + 
Sbjct: 231 FAFDSYALDSKAMGILDEAAGLIKSKPNTKIVLTGWTDS---RGSDAYNAKLSKNRAEAV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L K GV   R++ I      +    S+     NRR +I
Sbjct: 288 KGYLAKQGVPASRMTAIGKGKSFKYSNDSEEGRYMNRRTEI 328


>gi|87121179|ref|ZP_01077070.1| OmpA family protein [Marinomonas sp. MED121]
 gi|86163671|gb|EAQ64945.1| OmpA family protein [Marinomonas sp. MED121]
          Length = 201

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +           ++K+ + L  +    + I GHTD +        N +LS  RA +
Sbjct: 79  LFVSNRFEVRRRYYSEVKKLADFLRKNPSSNVVIEGHTDNT---GHNHHNQQLSQQRAQA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334
              +L+K+  +++ R+  I G+   R   ++      + NRR+
Sbjct: 136 IANILIKTFSIAQSRVKAI-GYGETRPIASNLSAQGKAKNRRV 177


>gi|109898397|ref|YP_661652.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109700678|gb|ABG40598.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 366

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           MFD +SS         +Q+  + +    +T  + I G+  ++P  +    N +LS++RA 
Sbjct: 254 MFDNNSSKLKNIDSASVQEFVDFMRRYGTTNAV-IEGY-ASAPGTDAY--NMKLSVERAQ 309

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
           +  Q L+    ++  R+  + G+   +L  +++   +   NRRI+
Sbjct: 310 NVRQYLVAQYNIAGSRLEAV-GYGETKLLDSANTREAHQKNRRIE 353


>gi|300921002|ref|ZP_07137390.1| outer membrane protein A [Escherichia coli MS 115-1]
 gi|300412048|gb|EFJ95358.1| outer membrane protein A [Escherichia coli MS 115-1]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|316931816|ref|YP_004106798.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599530|gb|ADU42065.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 334

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    LQ I + L  + +        I GHTDA        DN  LS  R
Sbjct: 208 FDTGSWDIPPDQAAKLQVIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 264

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA  +L +  GV  + ++   G+    LK+ +      NRR+ I
Sbjct: 265 AESAAALLTQQFGVPAENLTS-QGYGEQYLKVNTQAAERQNRRVTI 309


>gi|212633286|ref|YP_002309811.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212554770|gb|ACJ27224.1| OmpA [Shewanella piezotolerans WP3]
          Length = 201

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           Q    +F   S    P     ++ I   +         I GH   +        N  LS 
Sbjct: 73  QELKILFANDSYYIDPVYYTQVEIIATFMQKFPNTQAVIEGHCSKT---GTHEHNQELSQ 129

Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           +RA +   +L  +  +   R+S + G++  R    +    +   NRR+
Sbjct: 130 NRANAVSALLSERFDIESSRLSAV-GYSFDRPIDPTHTAAAHKVNRRV 176


>gi|294140555|ref|YP_003556533.1| sodium-type flagellar protein MotY [Shewanella violacea DSS12]
 gi|293327024|dbj|BAJ01755.1| sodium-type flagellar protein MotY [Shewanella violacea DSS12]
          Length = 289

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   S     +   + K+ E LA+ +EV  + I  +TD+   R+I   N ++S  RA S
Sbjct: 184 YESGGSELTRFSKSQIAKVQEYLAYDSEVELVLIDAYTDSYGGRSI---NQKVSEQRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                + +G+++DRI  + G    R   ++        NRR+ I +
Sbjct: 241 VKNFFLSAGINQDRIYTV-GHGERRHVASNATIDERGRNRRVVIRI 285


>gi|23015570|ref|ZP_00055342.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 161

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   S    +    L K    L       +++ GH D    R     N  L   R
Sbjct: 56  DRVFFDFDKSSLRADAKATLDKQAAWLKAYPNYSLTVEGHADE---RGTREYNLALGEKR 112

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A S  + L  +GV+  R+  +S G        +++   S NRR
Sbjct: 113 ANSVAEYLKAAGVAAARVKTVSYGKERPVALGSNEAAWSQNRR 155


>gi|324113719|gb|EGC07694.1| OmpA transmembrane domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496887|gb|EGC94746.1| outer membrane protein A [Escherichia fergusonii ECD227]
          Length = 359

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 231 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 287

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 288 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 346

Query: 338 VE 339
           V+
Sbjct: 347 VK 348


>gi|310823157|ref|YP_003955515.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396229|gb|ADO73688.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 171

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 22/169 (13%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
            +LA+      Q   ++            + K +  + T          ++N   F   +
Sbjct: 11  SLLAVPGMALAQSPVEQFKKAAGKASKSTLEKKINTKLTEDA-------RKNQCSFKTGT 63

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI----------SIRGHTDASPFRNIARDNWRLSLDR 291
            +        L+ +   L  + + +           + GHTD+      A  N  LS  R
Sbjct: 64  DVLEAGCDQKLKNLTAALVEAKKQLDAGGVKNYQFEVSGHTDS---SGDAAKNKALSEKR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           A    + L+  G+    I  +   +   L    D     + NRR +I V
Sbjct: 121 AAVIVKELVSRGIPRAEILAVGRGSEQPLVKPDDTAAKKAKNRRYEIQV 169


>gi|303237447|ref|ZP_07324013.1| OmpA family protein [Prevotella disiens FB035-09AN]
 gi|302482397|gb|EFL45426.1| OmpA family protein [Prevotella disiens FB035-09AN]
          Length = 226

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 212 VKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           V+    E T+   G+    +   +  +F  +SS     +   L     VL  + +  ++I
Sbjct: 86  VENAKVEKTKDANGLDCVKVTFDSGILFATNSSSLSAASKKDLNNFAGVLKQNRDCDVAI 145

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           +G+TDA         N  LS  RA +    L   GV   +I  + G       I +  ++
Sbjct: 146 QGYTDA---SGNDNINLPLSEKRATAVSSYLRAQGVPAGQIRTVEGLGSANP-IENKRIS 201

Query: 329 SANRRIDI 336
            ANRR+++
Sbjct: 202 QANRRVEV 209


>gi|259417580|ref|ZP_05741499.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346486|gb|EEW58300.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 166

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE   +L      L  +   V++I GH D    R     N  L   R
Sbjct: 56  DRVLFLVDQSSISPEAQGILDGQARWLTANPAYVVTIEGHADE---RGTREYNLALGARR 112

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333
           A SA + L+  GV+  RI  +S      ++I S+    + NRR
Sbjct: 113 ANSAREYLISQGVAASRIQTVSYGKERPIEICSEQSCYNKNRR 155


>gi|261365210|ref|ZP_05978093.1| OmpA family protein [Neisseria mucosa ATCC 25996]
 gi|288566472|gb|EFC88032.1| OmpA family protein [Neisseria mucosa ATCC 25996]
          Length = 253

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE    L  + + L   + + + + GHTD   F      N  LS  RA  
Sbjct: 91  LFGFDKDNLRPEAQENLDALAQRLSNENVQTVRVEGHTD---FMGSEEYNQALSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV   ++S + G    +
Sbjct: 148 VANYLVGRGVPSSKVSAV-GLGESQ 171


>gi|152969543|ref|YP_001334652.1| outer membrane protein A [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238894012|ref|YP_002918746.1| outer membrane protein A [Klebsiella pneumoniae NTUH-K2044]
 gi|7442975|pir||JC6558 outer membrane protein A precursor - Klebsiella pneumoniae
 gi|150954392|gb|ABR76422.1| outer membrane protein 3a (II*;G;d) [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546328|dbj|BAH62679.1| outer membrane protein A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 356

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     + A  N +LS
Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 285 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343

Query: 338 VE 339
           V+
Sbjct: 344 VK 345


>gi|325926546|ref|ZP_08187862.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
 gi|325543054|gb|EGD14501.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas perforans 91-118]
          Length = 400

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           G LI++ D     +FD   S   P+   VL  +G      T   + +RGHTDA   +   
Sbjct: 283 GYLITLND---RILFDFDKSDIRPDAARVLDTLGAAQTKVTAKDMQVRGHTDA---KGSD 336

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334
             N  LS  RA +             + +   G+   +    +      +P     NRR+
Sbjct: 337 DYNQALSERRANAVLA--ALRARGAAQSANAKGYGESQPVAPNTLNGQDNPGGRQLNRRV 394

Query: 335 DILVED 340
           +I +  
Sbjct: 395 EIFLRT 400


>gi|311694925|gb|ADP97798.1| peptidoglycan-associated lipoprotein [marine bacterium HP15]
          Length = 190

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  ++    E   VL      LA++    + I GH D    R     N  L   RA + 
Sbjct: 89  FDFDTAEIKQEARDVLVAHARFLANNPGQNVRIEGHADE---RGTKEYNLALGERRANAV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            + L+ +G S  ++  +S +   +  +  +S+   + NRR++++
Sbjct: 146 QRFLIVNGASRGQLETVS-YGEEKPAVMGSSESAWAQNRRVELV 188


>gi|319427914|gb|ADV55988.1| OmpA/MotB domain protein [Shewanella putrefaciens 200]
          Length = 202

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   PE    ++ I   L       ++I GHT  +        N  LS +RA +
Sbjct: 79  LFPNDSAFIAPEYYSQIEDIAAFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
               L     +   R++ I G+   R  +      +   NRR+
Sbjct: 136 VTAALADRFNIERSRLTAI-GYGSSRPIVLEQTPEAEMRNRRV 177


>gi|77460739|ref|YP_350246.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77384742|gb|ABA76255.1| putative exported flagellar protein [Pseudomonas fluorescens Pf0-1]
          Length = 302

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              LQ + E +        I + GH+D          N  LS  RA +
Sbjct: 178 FPGEGIELDAAAKAKLQVMLEYMKADPTVNHIELDGHSDN---SGNRLTNRELSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
                  +G+ E +I+ +         + +      + NRR+++ +
Sbjct: 235 VVDFFKANGIQESQIT-VRFHGERYPLVPNTNAANRAKNRRVNVHL 279


>gi|86136231|ref|ZP_01054810.1| hypothetical protein MED193_18949 [Roseobacter sp. MED193]
 gi|85827105|gb|EAQ47301.1| hypothetical protein MED193_18949 [Roseobacter sp. MED193]
          Length = 367

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 104/356 (29%), Gaps = 51/356 (14%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWII--NATDDDTKKAIEQYFNPFGK 74
           +++            S  +   D     +   +++        +DD    +  Y      
Sbjct: 1   MRRLERNRTRAEEEESVFVTMTDMTISFLLIIMILLAFFATQLNDDESVPLTAY------ 54

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
             +   +     +N   R+S   ++  +    ++             +  Q  + N    
Sbjct: 55  ERVRQERDELRVENQDLRASVKALEAELARVTSELETVTAERDRLLSELDQLRDENEALR 114

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           +   + E     L    ++   L +  +  +   K     +  L     L     + +  
Sbjct: 115 ARVAELEEENEHLRSRIDQ---LVEEIERLREEIKRLRDKIERLQVVNPLEAYLSQAIDQ 171

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             + +      L+ +     V+    +  +           +F   S         +++ 
Sbjct: 172 RREILVELRDRLLIEFPELQVVISPEQDALRFQ-----GEGLFRSGSPQLERRQRAIVET 226

Query: 255 IGEVL----------------------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +G +L                          E + I GHTD+   R    DN  LS  RA
Sbjct: 227 MGRLLDEILVCFTLGERAERGPDCESGNALIEAVQIEGHTDSDRGRI---DNVTLSTRRA 283

Query: 293 Y----SAYQ----VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
                +  +    +L    + +  +  +SG+   R    ++     +ANRRID+ +
Sbjct: 284 NETFFAIREEVAGILAHRNLRDQPVMSVSGYGEMRPIETNETTEGKAANRRIDLRI 339


>gi|93006335|ref|YP_580772.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
 gi|92394013|gb|ABE75288.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
          Length = 172

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    ++  VL +   +L  +    + I GHTD    R     N  L   RA +A
Sbjct: 72  FAFDSSAITSQSAGVLNQHAGLLKSNPNAGVVIAGHTDE---RGSREYNIALGERRAQAA 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
              L   GV+ + I ++  +   R   A  ++   + NRR ++
Sbjct: 129 RDYLAAQGVAANNI-RVISYGEERPAAAGTNEDAYAQNRRAEL 170


>gi|218709511|ref|YP_002417132.1| outer membrane protein [Vibrio splendidus LGP32]
 gi|218322530|emb|CAV18689.1| Outer membrane protein [Vibrio splendidus LGP32]
          Length = 278

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 19/211 (9%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + ++I K+            + A      ++KRL +L  +
Sbjct: 67  AKLHLDALVQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126

Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +    S        +     +          +  +D +    F ++S+   P+ +  L +
Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182

Query: 255 IGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              +L  + +  + + GH DA+        N  L+L RA    + L   G+   RI  +S
Sbjct: 183 ATTLLKENKSLDLVVTGHADAT---GTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVS 239

Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342
                       SD     NRR+ I V   +
Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEVISPK 269


>gi|114562634|ref|YP_750147.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333927|gb|ABI71309.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 289

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           + +        +   LQKI   L+   EV  + I  +TD+   R++   N ++S  RA S
Sbjct: 184 YQEGGVELTRFSSQQLQKIQRYLSFDPEVELVLIDAYTDSYGGRSV---NQKVSDKRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
              +L+ SG+ +DRI   SG    R    +D       NRR+ I +
Sbjct: 241 VKDILIASGIPKDRIH-TSGHGEKRHVTGNDLAEERKMNRRVVIKI 285


>gi|144898281|emb|CAM75145.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 300

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   +  LPE   ++   +  + A    +I + G+TD          N +LS  R  +
Sbjct: 196 FFDFDKADLLPEARGIIASALKAITAEPQGMIKVTGYTDT---SGTPSYNDKLSARRGNA 252

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
             Q L+  G++ DRI  +       L +          NRR  I +  +
Sbjct: 253 VEQALLHGGIAADRI-SVDSRGESDLFVQTPDGVREPQNRRATIELMGK 300


>gi|163751264|ref|ZP_02158492.1| sodium-type flagellar protein MotY [Shewanella benthica KT99]
 gi|161328978|gb|EDQ00052.1| sodium-type flagellar protein MotY [Shewanella benthica KT99]
          Length = 277

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   S     +   + K+ E LA+ +E+  + I  +TD+   R+I   N R+S  RA S
Sbjct: 172 YESGGSELTRFSKSQIAKVQEYLAYDSEIELVLIDAYTDSYGGRSI---NQRVSEQRADS 228

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
                + +G+++DRI  + G    R   ++        NRR+ I +
Sbjct: 229 VKNFFLSAGINQDRIHTV-GHGERRHVASNASIDERGRNRRVVIRI 273


>gi|156934557|ref|YP_001438473.1| outer membrane protein A [Cronobacter sakazakii ATCC BAA-894]
 gi|156532811|gb|ABU77637.1| hypothetical protein ESA_02391 [Cronobacter sakazakii ATCC BAA-894]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|89072281|ref|ZP_01158860.1| putative sodium-type flagellar protein MotY precursor
           [Photobacterium sp. SKA34]
 gi|89051813|gb|EAR57265.1| putative sodium-type flagellar protein MotY precursor
           [Photobacterium sp. SKA34]
          Length = 250

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           D R+  + F     +       +L  +   L +      + I GHTD          N +
Sbjct: 129 DARDVVLQFRLGQRVVSSSQNEILADLASYLKYDKNVKRVLIDGHTDNV---GSNVTNLQ 185

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           +S  RA     +L ++GV    + +I           ++  +  + NRR+ I
Sbjct: 186 ISKVRADDVASILRENGVRSS-LMEIRSHGSRYPVANNNTQDGKAKNRRVTI 236


>gi|291451540|ref|ZP_06590930.1| secreted protein [Streptomyces albus J1074]
 gi|291354489|gb|EFE81391.1| secreted protein [Streptomyces albus J1074]
          Length = 220

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 19/187 (10%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVADNIV 212
           +  + D +           PP    +  A  +     +LA      I S +  L  +   
Sbjct: 26  VAHADDDDPVAPPGSTTSSPPPEISEDSAGLKLADGAELAPPKVLDIKSVVEDLGGEERR 85

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGH 271
           +    +             +   +F K S+   PE    +Q I  E  A     + + G 
Sbjct: 86  EDTNTDVK--------FALQAEVLFGKDSAKLNPEARGRIQAIAEEAQAQQANKVRVFGF 137

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330
           TD            +LS +RA + ++ L+K+ +  +   ++ G++       +       
Sbjct: 138 TDDL---GSYEHGKKLSKNRADAVHEELVKT-LGPNVTYEVRGYSEDYPIADNSTEAGRM 193

Query: 331 -NRRIDI 336
            NRR+++
Sbjct: 194 KNRRVEV 200


>gi|56413933|ref|YP_151008.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362856|ref|YP_002142493.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128190|gb|AAV77696.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094333|emb|CAR59845.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 350

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|116693955|ref|YP_839488.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116651955|gb|ABK12595.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 103

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 244 PLPETIVVLQKIGEVLAH-STE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300
             P    ++  IG  +A       + + G+TD  P   I+R +N  LS  RA    ++  
Sbjct: 3   VEPWWASMMATIGRTIAASVPGAYVQVVGYTDNVPAGAISRGNNQALSEARAREVARIFA 62

Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            +GV    IS  +G         +   P  S NRR+++ V +
Sbjct: 63  AAGVPMQNISA-TGQGDADPLADNGTAPGRSRNRRVEVTVSN 103


>gi|228018149|gb|ACP52753.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018157|gb|ACP52757.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018163|gb|ACP52760.1| fibronectin-binding protein [Campylobacter jejuni]
          Length = 211

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 179

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
              L K GV + RI  + G+     + ++D 
Sbjct: 180 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDT 209


>gi|283853608|ref|ZP_06370844.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
 gi|283570999|gb|EFC19023.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B]
          Length = 345

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE + VL++   ++   T   + + GHTD+       + N +L   RA S 
Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKTGMKVVLEGHTDSV---GSDQYNMKLGQRRADSV 298

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
               +K G+   RI  IS G +       +    + NRR  I
Sbjct: 299 KAFFVKKGIDASRIETISFGESDPVATNKTAQGRALNRRCVI 340


>gi|254496705|ref|ZP_05109568.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254354133|gb|EET12805.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 293

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E    L++I + +A     +VI + G+ D S       +N  +S DRA  
Sbjct: 189 FGPDSRELTDEDKAQLRRIAQYVAADMQIKVIRVVGYADES--GRKGYNN-AISQDRAQV 245

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L+  GV E+++  ++ F   +    +D     + NRR+ I +  +
Sbjct: 246 VQNYLITLGVPEEQL-SVTWFGALKPVARNDTDAGRALNRRVVISLIKK 293


>gi|329118055|ref|ZP_08246768.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465943|gb|EGF12215.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 248

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        P+ I  L  +   L   + + + + GHTD   F    + N  LS  RA  
Sbjct: 90  LFGFDKDNLRPQAIDTLNDLAGRLSNENVQAVRVEGHTD---FMGSEQYNQALSERRANV 146

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV   +IS + G    +
Sbjct: 147 VANYLVNQGVPAGKISAV-GLGESQ 170


>gi|320577122|gb|ADW54070.1| outer membrane protein A [Sodalis glossinidius]
          Length = 358

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+   +   PE    L ++   L+        + + G+TD          N +LS
Sbjct: 230 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
            +RA S    L+  G+  D+IS   G         +   +           + +RR++I 
Sbjct: 287 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGNTCNSVKGRAAVISCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|85059008|ref|YP_454710.1| outer membrane protein A [Sodalis glossinidius str. 'morsitans']
 gi|84779528|dbj|BAE74305.1| outer membrane protein A precursor [Sodalis glossinidius str.
           'morsitans']
          Length = 356

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+   +   PE    L ++   L+        + + G+TD          N +LS
Sbjct: 228 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
            +RA S    L+  G+  D+IS   G         +   +           + +RR++I 
Sbjct: 285 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGNTCNSVKGRAAVISCLAPDRRVEIE 343

Query: 338 VE 339
           V+
Sbjct: 344 VK 345


>gi|332967831|gb|EGK06930.1| OmpA family protein [Kingella kingae ATCC 23330]
          Length = 227

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE +  L ++   V   + + + + GHTD   F    + N  LS  RA +
Sbjct: 93  LFGFDKDKLRPEAVETLNQLVARVNGTNVQAVRVEGHTD---FMGAEQYNQALSERRATA 149

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321
               L+  GV  +R+S + G    + +
Sbjct: 150 VANYLVSQGVPAERVSAV-GLGESQAR 175


>gi|221200412|ref|ZP_03573454.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
 gi|221206092|ref|ZP_03579106.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221174104|gb|EEE06537.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2]
 gi|221179753|gb|EEE12158.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M]
          Length = 159

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F+ T  G            +FD       P+   ++++IG  L  +  + + + G
Sbjct: 34  LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 90

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD       A D   LS  RA      L+  G+   RI  I G   H   +  + M   
Sbjct: 91  YTDDE--GTDAYDM-ELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 145

Query: 328 NSANRRIDILVEDR 341
            + NRR  I+V  R
Sbjct: 146 RAQNRRAAIVVSPR 159


>gi|224371626|ref|YP_002605790.1| putative chemotaxis protein [Desulfobacterium autotrophicum HRM2]
 gi|223694343|gb|ACN17626.1| putative chemotaxis protein [Desulfobacterium autotrophicum HRM2]
          Length = 310

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           DL K++++ ++ +    I   V      +G+ + +   +   +F    S  +      L+
Sbjct: 168 DLEKELTTKINAM---GIRDWVELANNNSGLRLEV---QLPILFAPGRSTIIGSYEGFLE 221

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISK 311
           KI  ++      + + G TD +  ++    N  L   RA +    L+K G+     +I+ 
Sbjct: 222 KIATLVKPYEVFVHVNGVTDGA--KSKKISNIDLGARRATAIVNRLVKYGLPPSIFKITS 279

Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338
              ++       + P  S NRR +I V
Sbjct: 280 RGEYSEGSHMKVNSP--SLNRRAEITV 304


>gi|313204438|ref|YP_004043095.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312443754|gb|ADQ80110.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 743

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 33/158 (20%)

Query: 209 DNIVKGVLFETTRTGILISI--IDQRNTPMF----DKSSS-------------IPLPETI 249
           D + +  +F  +  GILI     D   + +F       ++                P   
Sbjct: 543 DTVFQNTVFNESSHGILIRNCTNDTPGSELFLNKLSLGTAWQMDTIYYDFDKWDIQPVAY 602

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L  I  +L   T   + I  +TD      +  + W LS  RA +    +++ GV   R
Sbjct: 603 SMLDSIVSLLKSYTMMHVEIASYTDKR--GTVEYNLW-LSQQRANAVVNYIVRQGVDAGR 659

Query: 309 ISKISGFAHHRLKIASDPM--------NSANRRIDILV 338
           I    G+  +RL +  DP         +  NRR +I V
Sbjct: 660 IKA-RGYGKNRLIVG-DPSDISDREKIDQINRRSEIKV 695


>gi|213161917|ref|ZP_03347627.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425902|ref|ZP_03358652.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213622699|ref|ZP_03375482.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|289826790|ref|ZP_06545725.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 369

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356

Query: 338 VE 339
           V+
Sbjct: 357 VK 358


>gi|195940407|ref|ZP_03085789.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4024]
          Length = 267

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 139 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 195

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 196 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 254

Query: 338 VE 339
           V+
Sbjct: 255 VK 256


>gi|146983|gb|AAA24232.1| outer membrane protein II [Escherichia fergusonii]
          Length = 243

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 124 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 180

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 181 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 239

Query: 338 VE 339
           V+
Sbjct: 240 VK 241


>gi|56475929|ref|YP_157518.1| outer membrane protein [Aromatoleum aromaticum EbN1]
 gi|56311972|emb|CAI06617.1| Bacterial outer membrane protein [Aromatoleum aromaticum EbN1]
          Length = 238

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  PE    L ++ E        + +  GHTD          N +LS  RA +
Sbjct: 124 LFDFDKAVLKPEGRSKLDQLAEQAKSVKLEVILAVGHTDRL---GSDVYNQKLSERRANA 180

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSA--------NRRIDILV 338
               L+  GV  +RI    G    +    +   D +           +RR+++ V
Sbjct: 181 VKTYLVGKGVEANRIY-TEGKGERQPVTGTTCSDKLGRKALIECLQPDRRVEVEV 234


>gi|228018139|gb|ACP52748.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018141|gb|ACP52749.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018143|gb|ACP52750.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018145|gb|ACP52751.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018147|gb|ACP52752.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018151|gb|ACP52754.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018153|gb|ACP52755.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018155|gb|ACP52756.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018159|gb|ACP52758.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018161|gb|ACP52759.1| fibronectin-binding protein [Campylobacter jejuni]
 gi|228018165|gb|ACP52761.1| fibronectin-binding protein [Campylobacter jejuni]
          Length = 211

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 179

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
              L K GV + RI  + G+     + ++D 
Sbjct: 180 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDT 209


>gi|168243859|ref|ZP_02668791.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|198244081|ref|YP_002215003.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938597|gb|ACH75930.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205337186|gb|EDZ23950.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|312912061|dbj|BAJ36035.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323129338|gb|ADX16768.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326627270|gb|EGE33613.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 369

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356

Query: 338 VE 339
           V+
Sbjct: 357 VK 358


>gi|229485743|sp|P0C8Z2|OMPA_ESCFE RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II
 gi|146991|gb|AAA24236.1| outer membrane protein II [Escherichia fergusonii]
 gi|146999|gb|AAA24240.1| outer membrane protein II [Escherichia fergusonii]
          Length = 243

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 124 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 180

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 181 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 239

Query: 338 VE 339
           V+
Sbjct: 240 VK 241


>gi|91216576|ref|ZP_01253542.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
 gi|91185370|gb|EAS71747.1| OmpA family protein [Psychroflexus torquis ATCC 700755]
          Length = 759

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+  V LQKI   +       I +R HTD+   R     N  LS  RA + 
Sbjct: 547 FDLDKFQIRPDAEVELQKIIVAMKSYPNLRIDVRSHTDS---RAGDEYNQILSNKRAKAT 603

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
              ++ KSG+S +RIS   G+   +L          S+  ++ NRR + ++ 
Sbjct: 604 INYIIEKSGISSERISG-RGYGESQLVNKCSNGIDCSESEHALNRRAEFIIL 654


>gi|37704616|gb|AAR01580.1| OprF [Pseudomonas sp. MFY63]
          Length = 297

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 214 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 270

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI 322
            QVL    GV   R+  + G+   R   
Sbjct: 271 KQVLTSQYGVESSRVQSV-GYGESRPVA 297


>gi|300937693|ref|ZP_07152496.1| outer membrane protein A [Escherichia coli MS 21-1]
 gi|301023085|ref|ZP_07186892.1| outer membrane protein A [Escherichia coli MS 69-1]
 gi|300397206|gb|EFJ80744.1| outer membrane protein A [Escherichia coli MS 69-1]
 gi|300457294|gb|EFK20787.1| outer membrane protein A [Escherichia coli MS 21-1]
          Length = 358

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|256026544|ref|ZP_05440378.1| Outer membrane porin F [Fusobacterium sp. D11]
          Length = 391

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      I GHTD+       + N  
Sbjct: 286 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 342

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           LS +RA +    L   G++ +    I G+   R   ++D 
Sbjct: 343 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDT 380


>gi|189353654|ref|YP_001949281.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
 gi|189337676|dbj|BAG46745.1| putative OmpA family transmembrane protein [Burkholderia
           multivorans ATCC 17616]
          Length = 171

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
           +K   F+ T  G            +FD       P+   ++++IG  L  +  + + + G
Sbjct: 46  LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 102

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327
           +TD         D   LS  RA      L+  G+   RI  I G   H   +  + M   
Sbjct: 103 YTDDE--GTDGYD-LELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 157

Query: 328 NSANRRIDILVEDR 341
            + NRR  I+V  R
Sbjct: 158 RAQNRRAAIVVSPR 171


>gi|163800953|ref|ZP_02194853.1| hypothetical protein 1103602000593_AND4_01783 [Vibrio sp. AND4]
 gi|159175302|gb|EDP60099.1| hypothetical protein AND4_01783 [Vibrio sp. AND4]
          Length = 252

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 17/210 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 37  TKLHLDALIQEGARWCFPAAVVQALQKQNRIARELEGGLMLDAANDIVIQRRRLNLLEQQ 96

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255
           +   LS             E  R  + I  +I D  N    F   S+   P+ +  L + 
Sbjct: 97  LDYVLSQTTCKPPQD---IEAFRNDLSIVANIYDLLNVDNQFAIDSAEINPKYMGHLAEA 153

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
             +L       + + GH DA+        N +L+ +RA    + L   G++ DR+ +   
Sbjct: 154 AYILRDHPYLSLVVTGHADAT---GTPEYNSQLAQNRAEQVKRYLTVFGITSDRV-QTKS 209

Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
                             NRR+ I V   Q
Sbjct: 210 VGESLPLYEGQTPGVRLTNRRVSIEVLSGQ 239


>gi|269102083|ref|ZP_06154780.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161981|gb|EEZ40477.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 317

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L    + L A     I + G+TD+   R     N +LS+ RA + 
Sbjct: 200 FAFDSTELSAGDRAKLAPFEQRLQAQDAAQIYVVGYTDS---RGSEAYNQKLSVKRADAV 256

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            + L     V   RI    G        ++D     + NRR++I+
Sbjct: 257 AEALRSVMNVDGSRIIA-EGRGESNPVASNDTAEGRAQNRRVEII 300


>gi|161614736|ref|YP_001588701.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168821824|ref|ZP_02833824.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|238911107|ref|ZP_04654944.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|161364100|gb|ABX67868.1| hypothetical protein SPAB_02488 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205341689|gb|EDZ28453.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085284|emb|CBY95068.1| Outer membrane protein A Flags: Precursor [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 369

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356

Query: 338 VE 339
           V+
Sbjct: 357 VK 358


>gi|319406244|emb|CBI79881.1| Outer membrane lipoprotein omp16 [Bartonella sp. AR 15-3]
          Length = 168

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS    +   +L +  E L       I+I GH D    R     N  L   R
Sbjct: 58  DRIFFSLDSSSIESDAEYILARQAEWLLRYPHYFITIEGHADE---RGTREYNLALGQRR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           A +    L+  GVS  R++ +S +   R     D ++  + NRR  ++V +
Sbjct: 115 AVAVRDYLISLGVSSQRMNTVS-YGKERPVAICDNISCWNQNRRAVLVVNN 164


>gi|325123093|gb|ADY82616.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 186

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 78  FDYDSSDLSTEDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A    ++   NRR++I
Sbjct: 135 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 176


>gi|302062033|ref|ZP_07253574.1| ompA family protein [Pseudomonas syringae pv. tomato K40]
          Length = 380

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           ++   A+ G + +      SS    D          +   K  +T             ++
Sbjct: 23  QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 82

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190
              S  +   K          K    +   +   + +  +      ++   K L M   K
Sbjct: 83  PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             Q    +    L   + D+      F+  R   L++I    ++       ++ LP T+ 
Sbjct: 143 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 197

Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            + ++ +V+       + I GH D          N ++S +RA S   +   SG+  +R+
Sbjct: 198 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 254

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           S+  G      + A+D     + NRR++IL+  +
Sbjct: 255 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 287


>gi|153840578|ref|ZP_01993245.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810]
 gi|149745760|gb|EDM56890.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810]
          Length = 245

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 139 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQS---LSERRAES 195

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 196 LRTYFESLGLPEDRI-QVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQ 244


>gi|157164388|ref|YP_001467102.1| putative chemotaxis protein MotB [Campylobacter concisus 13826]
 gi|112801393|gb|EAT98737.1| putative chemotaxis protein MotB [Campylobacter concisus 13826]
          Length = 363

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 109/337 (32%), Gaps = 42/337 (12%)

Query: 33  WKIVYADFMTVLMAFFLVM---------WIINATDDDTKKAIEQY--FNPFGKNLMTASK 81
           W + YAD M  L+  F+++            N  ++  +  I              T  +
Sbjct: 14  W-VSYADLMAGLLFVFMLLIGAVVVKYVLTQNTLENKEQAIIAALANLKDAQGKNFTLEE 72

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
                ++   + S   I+L     I    +D       Q     +  N      N+   +
Sbjct: 73  LNDALKSELSKISDENINLKKSNEIFIIQIDALKEKLAQLINENKDANASIKELNASIFD 132

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--- 198
             +  +  + E        +D   S  K        L +      +  + L+DL      
Sbjct: 133 LNQKMIVLNDEISSKDRALSDANASGEKNLAKIAFLLEQVSKKEARYDELLRDLNVTRDR 192

Query: 199 ------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
                 I   +   + D +   +  +     + +S     ++ +FDK S++   E    L
Sbjct: 193 VKNLTGIRVKVISALKDRLGNSIEIDPNSGALKLS-----SSVLFDKGSAVLKEEVKEEL 247

Query: 253 QKIG----------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
           +             + +A + + I I G TD+         N  LS  RAY+  + +   
Sbjct: 248 KATLSKYFDVLLNDKEIASNIDQIVIEGFTDS---DGSYIYNLELSQKRAYAVMEFINSF 304

Query: 303 GVSE--DRISKISGFAHHRLKIASDPMN-SANRRIDI 336
                  ++   SG +++ L       +  A+RRI+I
Sbjct: 305 SDDARLRKLLVASGRSYNELVFKDGAEDKDASRRIEI 341


>gi|28871259|ref|NP_793878.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854509|gb|AAO57573.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 381

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
           ++   A+ G + +      SS    D          +   K  +T             ++
Sbjct: 23  QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 82

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190
              S  +   K          K    +   +   + +  +      ++   K L M   K
Sbjct: 83  PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 142

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             Q    +    L   + D+      F+  R   L++I    ++       ++ LP T+ 
Sbjct: 143 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 197

Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            + ++ +V+       + I GH D          N ++S +RA S   +   SG+  +R+
Sbjct: 198 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 254

Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           S+  G      + A+D     + NRR++IL+  +
Sbjct: 255 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 287


>gi|119472858|ref|ZP_01614765.1| putative Component of sodium-driven polar flagellar motor
           [Alteromonadales bacterium TW-7]
 gi|119444690|gb|EAW25997.1| putative Component of sodium-driven polar flagellar motor
           [Alteromonadales bacterium TW-7]
          Length = 292

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283
           S  D   T M +  +SS     +   L KI E L + +  E ISI  +TD+        +
Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDSTIESISIDSYTDSY---GGRWN 233

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           N  LS  RA +    ++  GV E+++ K +GF   R    +D       NRR+ I +
Sbjct: 234 NLDLSRKRAKAIKDYMVSLGVDENKV-KTTGFGEKRFVDTNDNILGRDKNRRLVIQI 289


>gi|323495647|ref|ZP_08100718.1| outer membrane protein [Vibrio sinaloensis DSM 21326]
 gi|323319282|gb|EGA72222.1| outer membrane protein [Vibrio sinaloensis DSM 21326]
          Length = 211

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
              F+   S    ++  VL ++  ++      I + GHTD     +    N+ L L R+ 
Sbjct: 108 RVYFNFDDSTLTQQSEYVLTRVMRLIESQARNIELAGHTDN--VGDAGY-NFSLGLRRSK 164

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
           +    L++ GV   RI+  + F  ++  + +  D     NRR+++
Sbjct: 165 AVEDYLVERGVDTKRIT-TTSFGENKPFVDNMSDENRKLNRRVEV 208


>gi|262368608|ref|ZP_06061937.1| peptidoglycan-associated lipoprotein [Acinetobacter johnsonii
           SH046]
 gi|262316286|gb|EEY97324.1| peptidoglycan-associated lipoprotein [Acinetobacter johnsonii
           SH046]
          Length = 189

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    +    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 81  FDYDSSDLSNDDYQTLQAHAQFLMANANSRVALTGHTDE---RGTREYNMALGERRAKAV 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GVS +++  +S +       A    N+   NRR++I
Sbjct: 138 ESFLITTGVSPNQLEAVS-YGKEMPINAGHDENAWKENRRVEI 179


>gi|224369398|ref|YP_002603562.1| ExeA2 [Desulfobacterium autotrophicum HRM2]
 gi|223692115|gb|ACN15398.1| ExeA2 [Desulfobacterium autotrophicum HRM2]
          Length = 555

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 42/253 (16%)

Query: 91  ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150
             +    ID SI +  T+           Q         N    S  +            
Sbjct: 343 TGTKAGAIDHSIAQPATELDATSITRPVPQPIVQDNDILNFDLASQGEDEPVAHAQTDPS 402

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
            E+  DL   T  E ++   E + +PPLS           +LQ L +K+         D 
Sbjct: 403 LEQATDLFARTSPEPTV---EQFLIPPLSNLSEPGFTPSTQLQPLERKVVVRFGYNNND- 458

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270
                    T   +                          + +  G ++AH    +S++G
Sbjct: 459 --------FTDQAL------------------------KDLTKFAGSLVAHPGAKVSVKG 486

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TDA+        N +LS  RA      L+  G   D+I K  G         +D     
Sbjct: 487 YTDAN---GNQTYNIKLSEFRANIVKSFLLGRGARLDQI-KTQGMGSENPIATNDTAQGR 542

Query: 331 --NRRIDILVEDR 341
             NRR++I V  +
Sbjct: 543 MMNRRVEIEVISK 555


>gi|124004158|ref|ZP_01689004.1| immunogenic 75 kDa protein PG4 [Microscilla marina ATCC 23134]
 gi|123990228|gb|EAY29727.1| immunogenic 75 kDa protein PG4 [Microscilla marina ATCC 23134]
          Length = 660

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRG-HTDASPFRNIARDNWRLSLDRAY 293
            +D +     P+    L + +   L ++ ++I   G HTDA   R   ++N  LS  RA 
Sbjct: 551 FYDFARWEIRPDAAKELDERVLTFLKNNPKLIVELGSHTDA---RGTDQNNLILSQKRAK 607

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVE 339
           SA   L+  G+  DRI    G+    LKI    ++  + ANRR  + V 
Sbjct: 608 SAVDYLISKGIDPDRIKA-KGYGETDLKIKEAKTEEEHQANRRTTVKVL 655


>gi|158337857|ref|YP_001519033.1| outer membrane protein A [Acaryochloris marina MBIC11017]
 gi|158308098|gb|ABW29715.1| outer membrane protein A, putative [Acaryochloris marina MBIC11017]
          Length = 513

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 86/247 (34%), Gaps = 10/247 (4%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D  I +    +    K G+ + +      +   F+ +          +L +  E    + 
Sbjct: 269 DQLIRDSSALSQQIGKDGNLSTQDATSVSKGIDFFTALESHQWMNAGTLAKRIEATSAVL 328

Query: 159 KSTDLEKSI--NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
             T     +  N    Y    +++    + +    +     +++  L G  +      V 
Sbjct: 329 SLTGETAGLVQNPRALYTQDFIAQAVTNSEQLVASIAATDPELAKVLRGQKSSTTKAQVT 388

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTD 273
            +  ++   +     R    F   S++   ++   L+ + + +     ST  +++ GHT 
Sbjct: 389 PQQIQSAPQVGNFKVRGEVKFATGSAVLSGDSQSTLKALAQEINEFNPSTIAVNVVGHTS 448

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            +     A  N  LS  RA      L   GV  + +++  GF+     +  DP + A +R
Sbjct: 449 KT---GSAATNQTLSQQRAQVVANFLRSQGVRPNLVAEGKGFSAQLPGV--DPASPAQQR 503

Query: 334 IDILVED 340
            +I +  
Sbjct: 504 TEIQLRR 510


>gi|37704622|gb|AAR01583.1| OprF [Pseudomonas sp. MFY69]
          Length = 318

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 235 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 291

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 292 KQVLTQQYGVESSRVDSV-GYGETRPVA 318


>gi|37704610|gb|AAR01577.1| OprF [Pseudomonas sp. MFY57]
          Length = 316

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTQQYGVESSRVDSV-GYGETRPVA 316


>gi|293609865|ref|ZP_06692167.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828317|gb|EFF86680.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 188

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 80  FDYDSSDLSTEDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A    ++   NRR++I
Sbjct: 137 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 178


>gi|239908944|ref|YP_002955686.1| putative outer membrane protein [Desulfovibrio magneticus RS-1]
 gi|239798811|dbj|BAH77800.1| putative outer membrane protein [Desulfovibrio magneticus RS-1]
          Length = 345

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE + VL++   ++   T   + + GHTD+         N +L   RA S 
Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKTGMKVILEGHTDS--IGTEQY-NMKLGQRRADSV 298

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
               +K G+   RI  IS G +       +    + NRR  I
Sbjct: 299 KAFFVKKGIDASRIETISFGESDPVATNKTAQGRALNRRCVI 340


>gi|298717317|ref|YP_003729959.1| OmpA-family outer membrane protein YfiB [Pantoea vagans C9-1]
 gi|298361506|gb|ADI78287.1| Putative OmpA-family outer membrane protein precursor yfiB [Pantoea
           vagans C9-1]
          Length = 157

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  + S   P + + +Q + + LA +  + + I GHTD          N +LSL R
Sbjct: 49  DKILFGVNESELTPSSKLTIQGMAKNLASTGIKHVRIDGHTDNY---GKPDYNQQLSLKR 105

Query: 292 AYSAY-QVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338
           A +   Q    + +  + I  +  G +       S    + NRR+ I++
Sbjct: 106 ANAVAAQWAEGAAIPRENIVTRGLGMSSPVASNNSAQGRAQNRRVAIVI 154


>gi|120555415|ref|YP_959766.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120325264|gb|ABM19579.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 309

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+      + +L  I    +   + E I + GH+D+        DN  LS +RA  
Sbjct: 192 FASGSTSLSQADMNLLDNIVTYVMADSTVERIFVDGHSDSI---GSRIDNRALSEERANV 248

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
             + L   G+ E  +  +         ++  P +  NRR  I ++ RQG
Sbjct: 249 VAEYLKSRGIDET-MLTVRAHGDQYP-VSRRPAD--NRRTTIRLQ-RQG 292


>gi|225075466|ref|ZP_03718665.1| hypothetical protein NEIFLAOT_00471 [Neisseria flavescens
           NRL30031/H210]
 gi|224953284|gb|EEG34493.1| hypothetical protein NEIFLAOT_00471 [Neisseria flavescens
           NRL30031/H210]
          Length = 253

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE    L  + + L++     + + GHTD   F    + N  LS  RA  
Sbjct: 91  LFGFDKDNLRPEAQENLDALAQRLSNKDVQTVRVEGHTD---FMGSEQYNQALSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV+  +IS + G    +
Sbjct: 148 VANYLVGHGVASSKISAV-GLGESQ 171


>gi|225024677|ref|ZP_03713869.1| hypothetical protein EIKCOROL_01559 [Eikenella corrodens ATCC
           23834]
 gi|224942566|gb|EEG23775.1| hypothetical protein EIKCOROL_01559 [Eikenella corrodens ATCC
           23834]
          Length = 230

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282
           +   ++   +  +F        PE    L ++ + L+ S    + + G+TD   F     
Sbjct: 88  VREELVSLSSNFLFGFDKFNLRPEARTTLDELAQRLSGSNVQSVRVEGNTD---FMGSDA 144

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSAN--RRID 335
            N RLS  RA +  + L+  GV  ++IS + G    + K+         N  RR+ 
Sbjct: 145 YNQRLSERRANTVSEYLVGRGVPAEKISAV-GLGESQAKMTEQCQQEVRNLGRRVS 199


>gi|114767081|ref|ZP_01445964.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114540734|gb|EAU43800.1| OmpA domain protein [Roseovarius sp. HTCC2601]
          Length = 310

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    + +  L  I   LA + +  +   GHTDA+        N  +S  RA +A
Sbjct: 206 FESGSASLGDDAVASLDAIAAYLAETPDRRVLFVGHTDAT---GSLEANIAVSRARADAA 262

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
              +   GV+  ++ S+ +G+        ++     NRR++ ++   +
Sbjct: 263 MDYVRGKGVAAAQLGSEGAGYLAPVASNLTEVGREENRRVEAILLPTE 310


>gi|296130809|ref|YP_003638059.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022624|gb|ADG75860.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
          Length = 198

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+   P     + ++   L      +++ GHTD          N  LS  RA + 
Sbjct: 93  LFAFDSAELAPGAAGKIGELAAALPQGA-AVAVDGHTDGL---GGDAVNVPLSQARAQAV 148

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDP-MNSANRRIDILV 338
              L  +    D +  ++G    +           DP   + NRR+++ V
Sbjct: 149 ADALTAA--RPDLVLTVTGHGSAQPVAEETTDGLDDPSGRALNRRVEVRV 196


>gi|62179592|ref|YP_216009.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127225|gb|AAX64928.1| putative hydrogenase, membrane component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714061|gb|EFZ05632.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 350

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 279 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|326315314|ref|YP_004232986.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372150|gb|ADX44419.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 379

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LP++   ++++ ++L   ++  +++ G+TD +     A  N  LS  RA + 
Sbjct: 277 FATDKTDILPDSQPQIEQVVQLLRQDASLKLAVNGYTDNT---GDAAHNKTLSEGRAKAV 333

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
              +   G+   R+S    G A      A+D   + NRR++++
Sbjct: 334 AAAVAAQGIDASRLSSAGFGAADPVADNATDEGKAKNRRVELV 376


>gi|71280451|ref|YP_270642.1| ompA family protein [Colwellia psychrerythraea 34H]
 gi|71146191|gb|AAZ26664.1| ompA family protein [Colwellia psychrerythraea 34H]
          Length = 278

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           + K  ++    ++     +    K++     + +    L +  +S    LVA    +   
Sbjct: 85  VAKYINVNDQNDELSTALVNEQRKQRSNEQIQSQYQAKLQRLEASYQQQLVALETQQHDS 144

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            +     +L+S+        F   SS   P     +  + ++L  S E  I + G+TD+ 
Sbjct: 145 GQLQADNLLMSLQ-------FSTGSSDIAPHYQEQVAALAQILNSSPEMKIDLSGYTDSI 197

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333
                   N  LS  R  S   +LM  GV E +I     F      +A++    +  +RR
Sbjct: 198 ---GEQSLNQTLSQARVESVRTLLMAQGVEEQQI-ATFAFGEESPVVANNESEVSFYDRR 253

Query: 334 IDILVED 340
           + + +  
Sbjct: 254 VVLKLHT 260


>gi|255263976|ref|ZP_05343318.1| OmpA family protein [Thalassiobium sp. R2A62]
 gi|255106311|gb|EET48985.1| OmpA family protein [Thalassiobium sp. R2A62]
          Length = 189

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           + GHTD+   R     N RLS +RA S  +V    G    RI  + G+   + +  +   
Sbjct: 121 VTGHTDS---RASDAYNMRLSQNRANSVARVGQSVG---ARIVDVRGYGERQPRADNHSH 174

Query: 327 -MNSANRRIDIL 337
              + NRR++I+
Sbjct: 175 QGMAQNRRVEII 186


>gi|213646608|ref|ZP_03376661.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 358

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|192293517|ref|YP_001994122.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192287266|gb|ACF03647.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 216

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+    +    ++ +G+ L+          + GHTD+         N  LS  RA 
Sbjct: 106 FEYNSANISRQAAAAVEALGKALSSPDLKGGTFVVAGHTDSV---GSDSFNQDLSERRAD 162

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  +VL++  G++   +  + G+   RLK  + P +  NRR+ ++    Q
Sbjct: 163 TIKRVLVEKYGIAGADLVTV-GYGESRLKDPAHPDSGINRRVQVVNMSDQ 211


>gi|148252154|ref|YP_001236739.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1]
 gi|146404327|gb|ABQ32833.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1]
          Length = 212

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+    +++  +Q +G  L           + GHTDA         N  LS  RA 
Sbjct: 102 FDYNSANISQKSLASVQALGRALTSPDLKGSTFVVAGHTDA---AGGDAYNQDLSERRAD 158

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           S  + L++  G++   +  + G+   +LK  S P+   NRR+ ++
Sbjct: 159 SIKRYLVEKFGIAGADLVTV-GYGKSKLKDPSQPLAEVNRRVQVV 202


>gi|262039986|ref|ZP_06013251.1| outer membrane protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042654|gb|EEW43660.1| outer membrane protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 364

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     + A  N +LS
Sbjct: 236 KSDVLFNFNKATLKPEGQQALDQLYTQLSNIDPKDGSAVVLGYTD--RIGSEAY-NQQLS 292

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 293 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 351

Query: 338 VE 339
           V+
Sbjct: 352 VK 353


>gi|163737130|ref|ZP_02144548.1| OmpA domain protein [Phaeobacter gallaeciensis BS107]
 gi|161389734|gb|EDQ14085.1| OmpA domain protein [Phaeobacter gallaeciensis BS107]
          Length = 326

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  +     +    L  + E L  + +  + + GHTD          N  +S  RA + 
Sbjct: 222 FETGAVTLGAKPYDSLAALAEFLIQNPDFDVLLVGHTDTV---GSLEQNIAISERRADAV 278

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
             ++L  S V   R+  ++G         +       ANRR+++++  R
Sbjct: 279 RRRLLADSAVDRARV-AVAGAGFMAPLTTNLTPEGREANRRVEVVLIRR 326


>gi|129134|sp|P24016|OMPA_CITFR RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II
 gi|144442|gb|AAA23095.1| outer membrane protein II [Citrobacter freundii]
          Length = 238

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 175

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +  D + +          +RR++I 
Sbjct: 176 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 234

Query: 338 VE 339
           V+
Sbjct: 235 VK 236


>gi|310778685|ref|YP_003967018.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748008|gb|ADO82670.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926]
          Length = 342

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +F  +S       +  + +I +VL      ++I G+TD++     A+ N  LS  RA 
Sbjct: 235 RELFSVNSYEVTGAGLAEIDEISQVLEGHKGTLTIEGNTDST---GAAKYNMMLSEKRAE 291

Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDIL 337
           +   V     +  + I  +S GF      + +    +   NRR+++ 
Sbjct: 292 AVANVFKAR-LEGEEIEIVSKGFGEENPLVPNTTPEAKAQNRRVEVF 337


>gi|126664268|ref|ZP_01735260.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
 gi|126623800|gb|EAZ94496.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
          Length = 635

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +    L+KI  V+    E+ I IR HTD+         N  LS  RA + 
Sbjct: 527 FDLDKWDIRQDAAEDLEKIISVMNQYPEMTIDIRSHTDSRQTHAY---NELLSDRRAKAT 583

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
            + ++KSG++ +R++   G+   +L          S+  +  NRR + +V 
Sbjct: 584 LEFMVKSGINRNRLTA-KGYGETQLVNECSDGVLCSEEDHQKNRRSEFIVM 633


>gi|150388324|ref|YP_001318373.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948186|gb|ABR46714.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 314

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 24/245 (9%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
            +    ++ Q  +       L  SQ  +  +    R  E   ++       +    +   
Sbjct: 49  NLEYARRQLQDTQQRLEASNLEISQAEDQLRLLTDRVDEIKAEVEDGEIALRLSELQIED 108

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-- 231
               +++        + RLQ +A  +   +   V D++ + +     R    + I D   
Sbjct: 109 QSQIIAESNRELGNLRSRLQGIAV-LRLDVLNRVKDSVEEEMARTRDRRDSPVYIADNGN 167

Query: 232 ---RNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEV-----ISIRGHTDASPFRN 279
                  +FD +S    P    VL ++      +L           I+I+GHTD     +
Sbjct: 168 IVIDEELVFDLNSYQIKPAGRQVLDELAMAFENILRDPEVRVNIDAINIQGHTDD--IGS 225

Query: 280 IARDNWRLSLDRAYSAYQVLMKSG-VSEDRISK---ISGFAHHRLK--IASDPMNSANRR 333
               N  LS +R+      L+ S    E+R +     S ++  R     A++   + NRR
Sbjct: 226 AEY-NRNLSANRSVEVVNYLLNSNPTLENRYASYFMASAYSKFRPIASNATEANRAQNRR 284

Query: 334 IDILV 338
           I+I +
Sbjct: 285 IEISI 289


>gi|260431085|ref|ZP_05785056.1| OmpA family protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414913|gb|EEX08172.1| OmpA family protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 209

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+        +L +    +    E    + GHTDA         N+ L L RA + 
Sbjct: 65  FAFDSAQLDASAQRILLQQANWIKQFPEARFRVYGHTDAV---GSQSYNYNLGLRRANAV 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323
              L++ G+S  R+  +  F   R  +A
Sbjct: 122 VNFLVQQGISRSRLEALVSFGKTRPLVA 149


>gi|254457162|ref|ZP_05070590.1| outer membrane protein, putative [Campylobacterales bacterium GD 1]
 gi|207085954|gb|EDZ63238.1| outer membrane protein, putative [Campylobacterales bacterium GD 1]
          Length = 195

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +K  + +L KK    LS     N  K +L E  +         +     F   SS    E
Sbjct: 54  QKVEISNLDKK--EILSKESVQNEYKTLLDEMPKEA-------KNYRLYFKFDSSDMTSE 104

Query: 248 TIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           +I  ++KI + + A++   I + G+TD       A  N  LS+ RA +  +VL  +GV+ 
Sbjct: 105 SIATIEKIIKDIEANNILQIDVIGYTDR---AGKAAYNKVLSMKRAKNVIKVLTDNGVNS 161

Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
            +I  +  +      I +D   +   NRR++I ++
Sbjct: 162 -KIISLDYYGEANPIIETDDGVAKKRNRRVEITLK 195


>gi|194450606|ref|YP_002045072.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197265555|ref|ZP_03165629.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|194408910|gb|ACF69129.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197243810|gb|EDY26430.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|321223685|gb|EFX48748.1| Outer membrane protein A precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|326622756|gb|EGE29101.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 358

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|298369983|ref|ZP_06981299.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281443|gb|EFI22932.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 227

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F     I  PE    L  + + L   + E + + GHTD   F    + N  LS  RA  
Sbjct: 68  LFGFDKDILRPEAKESLNALAQRLSNSNVESVRVEGHTD---FMGSEQYNQALSERRANV 124

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV+ ++IS + G    +
Sbjct: 125 VANYLVNQGVASNKISAV-GLGESQ 148


>gi|322418514|ref|YP_004197737.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320124901|gb|ADW12461.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 450

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325
           I GHTD+       + N  LS  RA +    L+K GV+  ++  I G+   + + ++  +
Sbjct: 376 IEGHTDSV---GDRQSNLNLSQQRAQNVKNELLKHGVAPAKV-AIKGYGFSKPRASNKTN 431

Query: 326 PMNSANRR 333
                NRR
Sbjct: 432 VGRQKNRR 439


>gi|241759220|ref|ZP_04757326.1| outer membrane Protein p.iii [Neisseria flavescens SK114]
 gi|241320356|gb|EER56653.1| outer membrane Protein p.iii [Neisseria flavescens SK114]
          Length = 253

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE    L  + + L   + E + + GHTD   F    + N  LS  RA  
Sbjct: 91  LFGFDKDNLRPEAQENLDALAQRLSNKNVETVRVEGHTD---FMGSEQYNQALSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321
               L+  GV+  +IS + G    + +
Sbjct: 148 VANYLVGRGVASSKISAV-GLGESQAR 173


>gi|222054197|ref|YP_002536559.1| peptidoglycan-associated lipoprotein [Geobacter sp. FRC-32]
 gi|221563486|gb|ACM19458.1| peptidoglycan-associated lipoprotein [Geobacter sp. FRC-32]
          Length = 194

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +K + K E   +PP++ EK       K          +     + +             
Sbjct: 23  AKKEMVKAEEATVPPVTTEKPAVTPPAKPAPS-----ETVKEQPIQEAPTTTAESTVKEQ 77

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA 281
              +    +    +FD  S +  P     L K  + L  +    + I GH D    R   
Sbjct: 78  APTVIAATELEKVLFDFDSFVLSPAARDTLSKNAQWLEKNKQVKVQIEGHCDE---RGSD 134

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
             N  L   RA SA   L+  G+   ++S IS F   +       +   + NRR + ++ 
Sbjct: 135 EYNLALGEKRAKSAVNYLVTLGIPASQLSVIS-FGKEKPADPGHDEAAWAQNRRAEFVIL 193


>gi|168233443|ref|ZP_02658501.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472870|ref|ZP_03078854.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197248715|ref|YP_002145940.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|194459234|gb|EDX48073.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197212418|gb|ACH49815.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205332492|gb|EDZ19256.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 371

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 243 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 299

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 300 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 358

Query: 338 VE 339
           V+
Sbjct: 359 VK 360


>gi|291085616|ref|ZP_06353500.2| outer membrane protein A [Citrobacter youngae ATCC 29220]
 gi|291070418|gb|EFE08527.1| outer membrane protein A [Citrobacter youngae ATCC 29220]
          Length = 360

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 232 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 288

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +  D + +          +RR++I 
Sbjct: 289 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 347

Query: 338 VE 339
           V+
Sbjct: 348 VK 349


>gi|37704678|gb|AAR01611.1| OprF [Pseudomonas sp. MFY338]
          Length = 315

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 232 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 288

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 289 KQVLTNQYGVESSRVQSV-GYGESRPVA 315


>gi|2251192|emb|CAA90573.1| outer membrane protein [Pseudomonas aeruginosa]
 gi|162319694|gb|ABX84373.1| OprL [Pseudomonas aeruginosa]
          Length = 168

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 69  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS   +  +S      +    D  + + NRR+++
Sbjct: 126 RYLVLQGVSPATLELVSYGKERPVATGHDEQSWAQNRRVEL 166


>gi|293390327|ref|ZP_06634661.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950861|gb|EFE00980.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 356

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +   P+    L  I   +A      I + G+TD     + A  N +LS  RA + 
Sbjct: 243 FAFNKANLKPQAQKTLDGISHEIAQVNNANIQVAGYTD--RIGSDAY-NQKLSQRRAETV 299

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GVS+  IS  +G+        +  D +            +RR++I V
Sbjct: 300 ANYLVSKGVSQQAISA-TGYGKANPVTGNKCDTVKGRKALIACLADDRRVEIAV 352


>gi|89111206|dbj|BAE80295.1| outer membrane protein OmpA [Acidovorax avenae subsp. avenae]
          Length = 379

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +  LP++   ++++ ++L   ++  +++ G+TD +     A  N  LS  RA + 
Sbjct: 277 FATDKTDILPDSQPQIEQVVQLLRQDTSLKLAVNGYTDNT---GDAAHNKTLSEGRAKAV 333

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
              +   G+   R+S    G A      A+D   + NRR++++
Sbjct: 334 AAAVAAQGIDASRLSSAGFGAADPVADNATDEGKAKNRRVELV 376


>gi|330010302|ref|ZP_08306729.1| outer membrane protein A [Klebsiella sp. MS 92-3]
 gi|328534592|gb|EGF61172.1| outer membrane protein A [Klebsiella sp. MS 92-3]
          Length = 364

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     + A  N +LS
Sbjct: 236 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 292

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 293 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 351

Query: 338 VE 339
           V+
Sbjct: 352 VK 353


>gi|254510741|ref|ZP_05122808.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221534452|gb|EEE37440.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 300

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 30/171 (17%)

Query: 196 AKKISSTLSGLVADNIVKG--VLFETTRTG------ILISIIDQRNTPM----------- 236
           A +    LS LV+ N   G   +   T  G      ++I      +  +           
Sbjct: 131 ATRGDEVLSLLVSRNPPDGYLQMIRVTPAGAQPAPPLVIEETADSSAGLLSDLGRDGHVI 190

Query: 237 -----FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
                F              L  + + LA +    +++ GHTD +      + N  +S  
Sbjct: 191 LDDLHFRTGEVALGEGPFASLTLLADYLADNPGTRLALVGHTDDT---GDLQANIAVSTK 247

Query: 291 RAYSAY-QVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           RA +   +++   GV+ DRI ++  G+       A+      NRR++ ++ 
Sbjct: 248 RAEAVRARLIETYGVAADRIEAQGVGYLAPITSNATPAGRDINRRVEAVLL 298


>gi|37704666|gb|AAR01605.1| OprF [Pseudomonas sp. MFY220]
 gi|37704668|gb|AAR01606.1| OprF [Pseudomonas sp. MFY222]
          Length = 315

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 232 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 288

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 289 KQVLTNQYGVESSRVQSV-GYGESRPVA 315


>gi|194443312|ref|YP_002040273.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|200390100|ref|ZP_03216711.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205357270|ref|ZP_02346426.2| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|194401975|gb|ACF62197.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199602545|gb|EDZ01091.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205322778|gb|EDZ10617.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 358

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|37704612|gb|AAR01578.1| OprF [Pseudomonas sp. MFY59]
 gi|37704620|gb|AAR01582.1| OprF [Pseudomonas sp. MFY68]
 gi|37704662|gb|AAR01603.1| OprF [Pseudomonas sp. MFY161]
          Length = 318

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  + + GHTD+         N +LS  RA + 
Sbjct: 235 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 291

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
            QVL  + G+   R+  + G+   R   
Sbjct: 292 KQVLTQQYGIESSRVDSV-GYGETRPVA 318


>gi|302387785|ref|YP_003823607.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1]
 gi|302198413|gb|ADL05984.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1]
          Length = 262

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++   L  +V D  ++    E TR G   + I  R+   FD  SS+   E   VL +   
Sbjct: 90  ELYLVLKQIVEDRNMQD-SVEITR-GDGFTFISFRDKVFFDGDSSVLRQEGKDVLTQFAA 147

Query: 258 VLAHSTEVI---SIRGHTDAS-PFR-NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
            ++ + + I    + GHT    P R N  R++  LS  R+      L   + VS +++  
Sbjct: 148 AMSQANKSIKEVQVLGHTSQGDPQRPNNIRNDRMLSAQRSAEVIIYLQSQNAVSPEKLVG 207

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDILV 338
           +S F   R      ++   + NRR++IL+
Sbjct: 208 MS-FGQFRPIAQFDTEEGRAQNRRVEILI 235



 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 11/190 (5%)

Query: 21  VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------- 71
           +  D  P  LGSW   Y D +T+L+ FF++++ +++ D    K + Q FNP         
Sbjct: 2   IKKDKKPEELGSWMDTYGDMVTLLLCFFVLLYSMSSVDQSKWKLLVQSFNPSALEESDQV 61

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKID--LSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
                +T  +G      P +       D    + + I ++          +   +  +  
Sbjct: 62  VLDAKVTEGEGKLTGGIPDDGGGATDFDELYLVLKQIVEDRNMQDSVEITRGDGFTFISF 121

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +   S   +      ++    + ++    K +    +       +   +   R 
Sbjct: 122 RDKVFFDGDSSVLRQEGKDVLTQFAAAMSQANKSIKEVQVLGHTSQGDPQRPNNIRNDRM 181

Query: 190 KRLQDLAKKI 199
              Q  A+ I
Sbjct: 182 LSAQRSAEVI 191


>gi|262373123|ref|ZP_06066402.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205]
 gi|262313148|gb|EEY94233.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205]
          Length = 188

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    E    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 80  FDYDSSDLSNEDYQTLQAHAQFLVANANSRVALTGHTDE---RGTREYNMALGERRAKAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A     +   NRR++I
Sbjct: 137 ESFLITNGVNPQQLEAVS-YGKEAPVNAGHNEAAWKENRRVEI 178


>gi|163800821|ref|ZP_02194721.1| putative outer membrane protein [Vibrio sp. AND4]
 gi|159175170|gb|EDP59967.1| putative outer membrane protein [Vibrio sp. AND4]
          Length = 204

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S          + ++ E L       I +RG+         +  N  LS  RA
Sbjct: 81  RILFSNDSDDVDTVYRRQIGELSEFLNEYPSTSIELRGYASKV---GGSEHNLDLSKRRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
            +    L+  G+   R+ +I G     L+     +  ++ NRR+   V   +G
Sbjct: 138 SNVRTALLGYGIDPARV-RIVGLGDTHLEQQGTDEVSHALNRRVTASVIGYKG 189


>gi|289764553|ref|ZP_06523931.1| outer membrane porin F [Fusobacterium sp. D11]
 gi|289716108|gb|EFD80120.1| outer membrane porin F [Fusobacterium sp. D11]
          Length = 311

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286
           +I   +  +FD       PE   VL+ +  VL  +      I GHTD+       + N  
Sbjct: 206 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 262

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           LS +RA +    L   G++ +    I G+   R   ++D 
Sbjct: 263 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDT 300


>gi|270159822|ref|ZP_06188478.1| peptidoglycan-associated lipoprotein [Legionella longbeachae
           D-4968]
 gi|289165420|ref|YP_003455558.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella longbeachae NSW150]
 gi|269988161|gb|EEZ94416.1| peptidoglycan-associated lipoprotein [Legionella longbeachae
           D-4968]
 gi|288858593|emb|CBJ12474.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella longbeachae NSW150]
          Length = 175

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F    S   P+ +  +    E L       + + GHTD    R     N  L   RA +
Sbjct: 70  LFSYDDSNLAPKYLPSVNAQAEYLKTHPGARVLLAGHTDE---RGSREYNVALGERRANT 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
              +L  +GV+  +I ++  +   R       D  ++ NRR++
Sbjct: 127 VADILRMAGVNRQQI-RVVSYGKERPINLGHDDASHAQNRRVE 168


>gi|195874240|ref|ZP_02701347.2| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630051|gb|EDX48703.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 358

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|71909209|ref|YP_286796.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71848830|gb|AAZ48326.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 193

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + +S    ++   L  + + +       I + GHTD          N RL+  RA + 
Sbjct: 92  FLEGTSELTADSKKELDGVFDEIKKRKVTDIVVIGHTDTV---GSQESNDRLAEARAKAM 148

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
              L   GV    I K+SG       +  A +     NRR++I V
Sbjct: 149 QAELEHLGVDAGSI-KVSGRGEREPLVKTADEVAEPLNRRVEIQV 192


>gi|323496851|ref|ZP_08101888.1| sodium-type flagellar protein MotY [Vibrio sinaloensis DSM 21326]
 gi|323318110|gb|EGA71084.1| sodium-type flagellar protein MotY [Vibrio sinaloensis DSM 21326]
          Length = 293

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S     ++   L +I E + H+ ++  + +  +TDA   ++ +++   LS  RA  
Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIRHNQDIDLVLVSTYTDAEDTKSASQN---LSERRAEV 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +     G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LQEYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292


>gi|54309975|ref|YP_130995.1| hypothetical protein PBPRA2821 [Photobacterium profundum SS9]
 gi|46914414|emb|CAG21193.1| hypothetical protein PBPRA2821 [Photobacterium profundum SS9]
          Length = 319

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +              L ++ + L  + E    I G TD++    I   N ++S  RA + 
Sbjct: 220 YQTGQVDVNDYGRYNLNEVAQTLQANPELTAEIIGRTDSTGTAAI---NAKVSEARANAV 276

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            Q L+ +GV   R++ ++  A        +  +   R ++++++
Sbjct: 277 SQYLIDNGVDASRLT-VTSVADQNPLTDDNGKSLIERSVEVVIK 319


>gi|225011622|ref|ZP_03702060.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004125|gb|EEG42097.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A]
          Length = 468

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 28/272 (10%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P  K+      G+ +    P+    + ID +         V+               E+ 
Sbjct: 214 PDKKDECPEVPGLKEYNGCPDTDGDSVIDKNDICPEVAGKVEFNGCPDTDGDGVSDPEDA 273

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMKRK 189
              ++ S + + C ++       G  +  +TD     I   +N   P    +      + 
Sbjct: 274 CIDIAGSIEMKGCPDT------DGDGISDATDSCINEIGPLDNNGCPWPDADNDGVADK- 326

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PET 248
               DL K    ++S      +   V+      G  I+         F  SS   L  + 
Sbjct: 327 ---DDLCKDEVGSISNNGCPKLSNEVMKTINEFGAKIN---------FAASSDKILGKKM 374

Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
             +L KI ++L  +    + I G+  A         N  LS+ RA +    L K G++ +
Sbjct: 375 FDILYKIKDILIENPVGNLLIEGYASAD---GSEEYNIELSVKRAEAVRDFLNKIGINIE 431

Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDIL 337
           R+  + G   +     ++     + NRR+  +
Sbjct: 432 RLE-VRGLGVNSPVGNNESPEGRAENRRVQFI 462


>gi|163748690|ref|ZP_02155943.1| OmpA family protein [Shewanella benthica KT99]
 gi|161331800|gb|EDQ02604.1| OmpA family protein [Shewanella benthica KT99]
          Length = 199

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     ++ I   +       ++I GH   +      + N  LS +RA +
Sbjct: 76  LFANDSYYIAPLHYDQVEVIASFMNEFKNTKVTIEGHCSKT---GSYQHNLSLSQNRADA 132

Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
              +L  +  ++ DR+  I G+++ R    S    +   NRR+
Sbjct: 133 VTSLLTERFSIAPDRLIAI-GYSYDRPVDESGTHRAQTRNRRV 174


>gi|220935396|ref|YP_002514295.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996706|gb|ACL73308.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 181

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S   PE   V+   G  LA +    +   GHTD    R     N  L   RA + 
Sbjct: 76  FEFDRSDIKPEFEEVIIAHGRFLAQNPNMQVRAEGHTDE---RGTREYNLGLGERRAQAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            ++LM  G   D+I ++  +           +   + NRR++++
Sbjct: 133 QRMLMLQGARADQI-QVVSYGEEMPVAFGRDEESWAQNRRVELV 175


>gi|283784777|ref|YP_003364642.1| outer membrane protein A [Citrobacter rodentium ICC168]
 gi|282948231|emb|CBG87798.1| outer membrane protein A [Citrobacter rodentium ICC168]
          Length = 351

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     +    N  LS
Sbjct: 223 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDTY-NQGLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  D+IS   G         S  D + +          +RR++I 
Sbjct: 280 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGSTCDNVKARAALIDCLAPDRRVEIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|269104043|ref|ZP_06156740.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163941|gb|EEZ42437.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 261

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S  LP     L +   +L  H    + + GHTD         DN+ L L RA + 
Sbjct: 136 FALNRSELLPAYQQALTQAAAILKRHRHWHVKLVGHTDTQ---GQKHDNYHLGLTRANNV 192

Query: 296 YQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRI--DILV 338
            + L++ GV+  ++S + +G +       S  M  ANR++  +ILV
Sbjct: 193 KRFLLEHGVNGHQVSVLSTGESQAVPDTHSRTMQLANRQVVAEILV 238


>gi|229592294|ref|YP_002874413.1| putative OmpA family lipoprotein [Pseudomonas fluorescens SBW25]
 gi|126214996|emb|CAM35533.1| OprL protein [Pseudomonas fluorescens]
 gi|229364160|emb|CAY51808.1| putative OmpA family lipoprotein [Pseudomonas fluorescens SBW25]
          Length = 166

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TDA   R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDA---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GV+  ++  +S      +   +D  + + NRR+++
Sbjct: 124 RYLVLQGVAPGQLELVSYGKERPVATGNDEQSWAQNRRVEL 164


>gi|323497326|ref|ZP_08102344.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
 gi|323317409|gb|EGA70402.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
          Length = 203

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+   P  +  ++++ + +A      + ++G+  AS        N  LS  RA++
Sbjct: 83  LFANDSAEVQPVFMTQIREVADFMAEFPSTSVELQGY--ASKVGRADY-NLELSKQRAFA 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI--DIL 337
              +L+  GV   R++ I GF    L +    + +++ NR++   I+
Sbjct: 140 VEDLLLSYGVDSSRVN-IVGFGDTNLSLEGNDEQVHAQNRKVVASII 185


>gi|284037429|ref|YP_003387359.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283816722|gb|ADB38560.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 704

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 36/276 (13%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            YF      +  +    +           +   L +   I  + V +  G     K  + 
Sbjct: 460 GYF-----TIPASGDYAYLSSRSGSLGEDDIFRLKLYPAIKPDPVAIISGLVLDSKTKKP 514

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           + + I       Q    K     ++ + K +  +         +E YF       + L +
Sbjct: 515 IASEIVSTLLGDQKPLGKVDFNPETGEYKLILPTQKTYVLTATKEGYF----PTIETLDL 570

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
            + KR +D+ K                 +       G  I++ +     +F +S    LP
Sbjct: 571 SKDKRFRDIKK----------------NLYLAKIEAGQTITMRE----VLFQQSQFTLLP 610

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
                L K+ +++       + I GHTD          N +L+ DR     + L+K G+ 
Sbjct: 611 GADTELDKMADMMETHPTMELLIEGHTDNQ---GDWEPNMKLAEDRVRVVKEYLLKKGIK 667

Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            +RI +   +   +   +++       NRR++  + 
Sbjct: 668 PERI-QTKAWGPSKPIASNETEEKRKLNRRVEFTIL 702


>gi|149372358|ref|ZP_01891546.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
 gi|149354748|gb|EDM43311.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
          Length = 631

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +  + LQKI  +L    +  I +R HTD+   R     N  LS  RA + 
Sbjct: 524 FDLDKSFIRSDAAIELQKIISLLNQYPQMKIDVRSHTDS---RADDAYNLDLSDRRAKAT 580

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              L+K+G+   R+S   G+   +L          +   +  NRR + ++ +
Sbjct: 581 IAYLIKNGIDSSRLSG-RGYGETQLINGCSNGVDCTSIEHQLNRRSEFIIVE 631


>gi|37704676|gb|AAR01610.1| OprF [Pseudomonas sp. MFY315]
          Length = 316

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316


>gi|237756911|ref|ZP_04585384.1| putative OmpA/MotB domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690932|gb|EEP60067.1| putative OmpA/MotB domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 260

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS    E +  L  + + L       + I+G+TD     +   ++ +L+L RA + 
Sbjct: 155 FYSNSSKIKKEYLPYLNVVAKYLKTHPDVKVKIKGYTDN--IGSKKYND-KLALKRAEAV 211

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            Q L+K GVS +RI  I G       ++++       NRR +  + +
Sbjct: 212 KQYLIKLGVSPNRIM-IDGVGKSEYIVSNNNELDRFTNRRAEFYIIN 257


>gi|328470084|gb|EGF40995.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus
           10329]
          Length = 325

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L    +++    +  + I G++D +     A+ N +L+  RA + 
Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                  G++ DR++ + G        +++      ANRR++++V
Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313


>gi|294787779|ref|ZP_06753023.1| putative OmpA family protein [Simonsiella muelleri ATCC 29453]
 gi|294484072|gb|EFG31755.1| putative OmpA family protein [Simonsiella muelleri ATCC 29453]
          Length = 214

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 36/158 (22%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256
                D IV+ V     ++G+ I   D R   M       F+   ++  PE   +L ++ 
Sbjct: 46  QNAQRDEIVQDVQQALKKSGLEIE-TDPRTGDMNIAADFAFESGKAVLKPEGKAILDQLM 104

Query: 257 EVLAHSTE------------VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            V A +               + + GHTD+         N +LS +RA +     + + +
Sbjct: 105 PVFAKAVFDELSGEQQEEITRLIVEGHTDSV---GSYASNMQLSTERANAVLSY-IDTQM 160

Query: 305 SE--------DRISKISGFAHHRLKIASDPMNSANRRI 334
            +         +++ + G   +      +P +   RR+
Sbjct: 161 PDFPHKAELLAKMTAV-GRGENDASPTENPAD---RRV 194


>gi|260597356|ref|YP_003209927.1| outer membrane protein A [Cronobacter turicensis z3032]
 gi|260216533|emb|CBA29736.1| Outer membrane protein A [Cronobacter turicensis z3032]
          Length = 355

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + +  N  LS
Sbjct: 227 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDSY-NQGLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 284 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|271963004|ref|YP_003337200.1| OmpA/MotB domain-containing protein [Streptosporangium roseum DSM
           43021]
 gi|270506179|gb|ACZ84457.1| OmpA/MotB domain protein [Streptosporangium roseum DSM 43021]
          Length = 193

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASP 276
            T+ G  +++    +  +F    ++   +    L+ +   +    +  V+ I GHTD   
Sbjct: 66  ETKQGETVTLALTSD-VLFALDRAVLTAKAAARLRGVAGRVKTESAGGVVKIVGHTDDQ- 123

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNS 329
                  N RLSL RA +  + L      +    + +G    + K+ +       +   +
Sbjct: 124 --GTDAYNDRLSLRRAQAVQEGLRALLSGQSVTFEATGLGERQPKVPNVVDGRPVEENRA 181

Query: 330 ANRRIDIL 337
            NRR++I+
Sbjct: 182 RNRRVEIV 189


>gi|153837108|ref|ZP_01989775.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
 gi|149749696|gb|EDM60441.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810]
          Length = 325

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L    +++    +  + I G++D +     A+ N +L+  RA + 
Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                  G++ DR++ + G        +++      ANRR++++V
Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313


>gi|146283137|ref|YP_001173290.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri
           A1501]
 gi|145571342|gb|ABP80448.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri
           A1501]
 gi|327481490|gb|AEA84800.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri DSM
           4166]
          Length = 167

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + GHTD    R     N  L   R+ +  
Sbjct: 68  FEYDSSDLKPEAMRALDVHAKDLKGNGARVVLEGHTDE---RGTREYNMALGERRSKAVQ 124

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      + + +D  + + NRR+++
Sbjct: 125 RYLVLQGVSPAQLELVSYGEERPVAMGNDEQSWAQNRRVEL 165


>gi|83312507|ref|YP_422771.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82947348|dbj|BAE52212.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 278

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    E    L+++           I + GHTD    ++   D  +LS  RA + 
Sbjct: 178 FDFNKSTLTKEAQKTLKEVATAAGQIKPASIYVAGHTDTV-GKSGYND--KLSNARAAAV 234

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            + L K+G+          F   +L + +  +   + NRR++I
Sbjct: 235 SKQLAKAGIKS---IDAKSFGFTKLAVPTKANTKEAKNRRVEI 274


>gi|28900103|ref|NP_799758.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365754|ref|ZP_05778250.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
 gi|260880676|ref|ZP_05893031.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|260897717|ref|ZP_05906213.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|260899371|ref|ZP_05907766.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|28808386|dbj|BAC61591.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086262|gb|EFO35957.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466]
 gi|308092198|gb|EFO41893.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034]
 gi|308109307|gb|EFO46847.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037]
 gi|308114934|gb|EFO52474.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030]
          Length = 325

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +   L    +++    +  + I G++D +     A+ N +L+  RA + 
Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                  G++ DR++ + G        +++      ANRR++++V
Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313


>gi|255536293|ref|YP_003096664.1| Thrombospondin type 3 repeat:OmpA/MotB [Flavobacteriaceae bacterium
           3519-10]
 gi|255342489|gb|ACU08602.1| Thrombospondin type 3 repeat:OmpA/MotB [Flavobacteriaceae bacterium
           3519-10]
          Length = 477

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  S   LP    +L      +  S    S+ G TDA         N  LS  RA +  
Sbjct: 371 FDFDSDRILPSNTPILNNAVNYINTSNGNYSVIGGTDA---SGSEAYNQGLSERRANTVK 427

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
             L+++GV   ++  + G     LK    +P        N ANRR+
Sbjct: 428 NYLIQNGVESAKLQSV-GRGEKELKYPECNPTSKCPEWKNRANRRV 472


>gi|319956779|ref|YP_004168042.1| ompa/motb domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419183|gb|ADV46293.1| OmpA/MotB domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 490

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 31/229 (13%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            Q+ +  +    +       L ++ +  +  ++     L  L K+K        RL+   
Sbjct: 251 QQKQKKLQEYANKVIVLSNKLTRTENELRLKDENLTRLLEALDKQKSRYEDLIARLRKQR 310

Query: 197 KKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +I S       +   + + + K +  +     + +S     +  +FDK S+    E   
Sbjct: 311 ARIKSLTGIRLKVIDALKETLGKRIAIDKKSGALRLS-----SKILFDKGSAELKEEAKA 365

Query: 251 VLQK-----IGEVLAHST-----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
            L+      I  ++++       + I I GHTD+         N  LS  RA +    L+
Sbjct: 366 ELKDTFEKYIAALMSNRAIRPYLDRIIIEGHTDS---DGGYLYNLELSQKRALAVMNYLL 422

Query: 301 KSGVSE----DRISKISGFAHHRLKIASDPMN-SANRRIDI--LVEDRQ 342
              +++     +    SG A+    I +   +  A+RRI+I   + +R+
Sbjct: 423 SLPIAQKYHLKKYLVASGRAYMDPIIKNGVEDKEASRRIEIKFTLRNRE 471


>gi|62901665|gb|AAY18798.1| OmpA [Cronobacter sakazakii]
          Length = 347

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 219 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 275

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR++I 
Sbjct: 276 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARAALIDCLGPDRRVEIE 334

Query: 338 VE 339
           V+
Sbjct: 335 VK 336


>gi|260459525|ref|ZP_05807780.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259035079|gb|EEW36335.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 121

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         ++ I + L           + I GHTDA       + N  LS  R
Sbjct: 12  FAFGSAAISSSQYGKIENIADALKRILRRDRGARVLIEGHTDAV---GSFQSNQVLSEQR 68

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S  + L++  GV    +  + G+    L + +   N  NRR+ +
Sbjct: 69  AASLKRTLVREFGVPGHALETV-GYGEEFLLVPTQNENWQNRRVTL 113


>gi|88800186|ref|ZP_01115754.1| peptidoglycan-associated lipoprotein [Reinekea sp. MED297]
 gi|88777032|gb|EAR08239.1| peptidoglycan-associated lipoprotein [Reinekea sp. MED297]
          Length = 188

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 8/151 (5%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +  L  +       LV +++    + E     +   ++D      FD   S+  PE I
Sbjct: 41  EEVDTLELETDDESIELVVEDVEPVAVIEDAAEDVYNELLDLT-LVYFDFDKSVIRPEFI 99

Query: 250 VVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            +L    E L  +   + +  GH D    R     N  L   RA      LM  GVS  +
Sbjct: 100 DMLNAHSEFLVANPTQMVVLEGHADE---RGTREYNLALGERRAKQVATYLMVQGVSAAQ 156

Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
           I  +S +   +      ++   S NRR++I+
Sbjct: 157 IDTVS-YGEEKPLAIGKTEAEYSQNRRVEIV 186


>gi|307545157|ref|YP_003897636.1| peptidoglycan-associated lipoprotein [Halomonas elongata DSM 2581]
 gi|307217181|emb|CBV42451.1| K03640 peptidoglycan-associated lipoprotein [Halomonas elongata DSM
           2581]
          Length = 180

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S    PE   VL      L ++    + ++GHTD    R     N  L   RA + 
Sbjct: 80  FAFDSDAIRPEFQSVLNAHARFLRNNPNANVVLQGHTDE---RGTREYNLALGERRAGAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            + L   GVS  ++  +S +   R     +++   + NRR+
Sbjct: 137 EEFLSVQGVSPSQVEVVS-YGEERPAARGSNEEAYAQNRRV 176


>gi|296136329|ref|YP_003643571.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
 gi|294340565|emb|CAZ88950.1| putative OmpA/MotB precursor [Thiomonas sp. 3As]
 gi|295796451|gb|ADG31241.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
          Length = 230

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 21/117 (17%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + ++ LP     L  +   +      + I  G+TD+  F ++A  N +LS+ RA +
Sbjct: 113 FFQFNKAVLLPAGKEKLDDLAGKIKAINLEVVIATGYTDS--FGSVAY-NQKLSVRRAEA 169

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------------SANRR--IDIL 337
               L+  GV  D+I  + G      ++  DP +            + NRR  ++++
Sbjct: 170 VKAYLVSQGVPADKIY-VEGKGKTDFRV--DPKSCKGSFKSQVECQAPNRRTVVEVV 223


>gi|291437526|ref|ZP_06576916.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340421|gb|EFE67377.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 218

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            + T  +++   +   T+   S   E +   P L       +   K L      I   + 
Sbjct: 32  GATTAYADESPSVPPGTEATASAPVELDPNDPDLKLPDGATLAEPKVLD-----IKQVVE 86

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263
               D   +    +             +   +F K S+    +    +  I E +   + 
Sbjct: 87  DQSGDERREDTNSDVK--------FALQAEVLFGKDSAKLGAQAKARIATIAEEIKTQNA 138

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I + G TD     +   D   LS  RA + + VL +     D   ++ G+        
Sbjct: 139 TRIRVFGFTDNL-GSSAHGDV--LSRQRANAVHGVLEQELNDSDVTYEVRGYGEQYPIAD 195

Query: 324 SDPMNSA--NRRIDI 336
           +        NRR++I
Sbjct: 196 NSTEAGRKKNRRVEI 210


>gi|312148404|gb|ADQ31063.1| outer membrane protein [Borrelia burgdorferi JD1]
          Length = 381

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I + +   + +  +K +  E    GI +S  D      F  +S   L +    +  I ++
Sbjct: 245 IETEVENYIREKKIKAIKIEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316
           L       I I GHT+             LS  RA +    L+K  V  +D+I    G+ 
Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355

Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340
             + K   S P+ + NRR++I + +
Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380


>gi|316936147|ref|YP_004111129.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315603861|gb|ADU46396.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1]
          Length = 216

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+ +S+    +    ++ +G+ L+          + GHTD+         N  LS  RA 
Sbjct: 106 FEYNSANISRQAAPAVEALGKALSSPDLKGATFVVAGHTDSV---GGEGFNQELSERRAD 162

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  +VL++            G+   RLK  + P +  NRR+ ++    Q
Sbjct: 163 TIKRVLVEKYDIAGADLVTVGYGESRLKDPAHPDSGVNRRVQVVNMSDQ 211


>gi|104780481|ref|YP_606979.1| OmpA family outer membrane protein [Pseudomonas entomophila L48]
 gi|95109468|emb|CAK14169.1| putative outer membrane protein, OmpA family [Pseudomonas
           entomophila L48]
          Length = 322

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 7/202 (3%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             + +     K          +        ++ P  S+EK  A     ++   A +    
Sbjct: 37  GSDKVAEQEVKAAVTENVAKADAKSESSSRWWWPFGSEEKKPAAAAVPKIDQKATQAWLD 96

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-H 261
                    +KG   E  R   ++++    ++       ++ LP T+  + ++ +V+   
Sbjct: 97  QYEPKVREAIKGSKLELERREDVLAVTIPVDSSYNPDRPNMLLPITLGPITQVAKVIETD 156

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           +   + I GH D+         N +LSL+RA S   +   SG+  DR+  + G      +
Sbjct: 157 TKTAVLILGHADS---SGATAANQKLSLERAASVSAIFRLSGLQRDRLM-LKGMGSVMPR 212

Query: 322 IASD--PMNSANRRIDILVEDR 341
            A+D     + NRR+++L+  +
Sbjct: 213 AANDSAEGRALNRRVEMLLTPQ 234


>gi|237737904|ref|ZP_04568385.1| outer membrane protein OprF [Fusobacterium mortiferum ATCC 9817]
 gi|229419784|gb|EEO34831.1| outer membrane protein OprF [Fusobacterium mortiferum ATCC 9817]
          Length = 1511

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   +     +  V++K  E +        I I G+TD       +  N +LSL+RA  
Sbjct: 1406 FEFDKAELNNNSKKVIEKFSEEINRDNLKGKIKIEGYTDNV---GKSSYNEKLSLERATK 1462

Query: 295  AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              + L K   + D   +I G         ++     + NRR++I
Sbjct: 1463 VAEELKKQVKNSDTEYEILGKGASNPIGNNETEVGRAKNRRVEI 1506


>gi|127512720|ref|YP_001093917.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4]
 gi|126638015|gb|ABO23658.1| OmpA/MotB domain protein [Shewanella loihica PV-4]
          Length = 251

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 20/190 (10%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
            +   T    S  K++   L       +   ++ + L  + ++       L      +G 
Sbjct: 69  GMIGQTVANDSEIKQQQATLAEQESRMMALKQQNEALLTVQQEYQEAKVELAQLRQHQGT 128

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA 274
             E    G+ +          F   SS   P     L ++ + +A S    + + G+ D 
Sbjct: 129 RLEELALGLNVQ---------FKTGSSTVEPHFQSQLNEVADAMAISPQLKLDLTGYADR 179

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN--- 331
              R  +  N  LS  R       L+  GV E R+     +         D  +  N   
Sbjct: 180 ---RGDSSYNQALSEQRVAEVRSYLVSKGVDEARLDA-KAYGASAPV--KDEQSFENDFF 233

Query: 332 -RRIDILVED 340
            RR+ I +  
Sbjct: 234 DRRVTIKLLP 243


>gi|332188223|ref|ZP_08389951.1| peptidoglycan-associated lipoprotein [Sphingomonas sp. S17]
 gi|332011722|gb|EGI53799.1| peptidoglycan-associated lipoprotein [Sphingomonas sp. S17]
          Length = 174

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        PE+  +L      L       I+I GH D    R     N  L   RA +A
Sbjct: 72  FGLDQYDIDPESRAILDSQAGWLMRYPNVRITIEGHCDE---RGTREYNLALGDRRANAA 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
              L   GVS DR++ IS      + + SD  + + NRR + +++
Sbjct: 129 KNYLAARGVSADRMTVISYGKERPIALGSDEASYAQNRRAVTVVL 173


>gi|315179667|gb|ADT86581.1| OmpA family protein [Vibrio furnissii NCTC 11218]
          Length = 344

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 226 ISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIAR 282
           I+  + R+T + F              L+ +    V       + I GHTD    R    
Sbjct: 210 ITFAEARDTSLYFASGQQSLSGAQQHTLRDLISYVVRDKRATHLLIDGHTDNVGSRLA-- 267

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            N  +S  RA     VL   GV+ D+I +I            A++   + NRR+ I
Sbjct: 268 -NLSVSRSRAEQVAAVLETLGVAADKI-QIRAHGSRYPVASNATESGRAQNRRVVI 321


>gi|289627038|ref|ZP_06459992.1| OmpA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647994|ref|ZP_06479337.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867282|gb|EGH01991.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 381

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSTAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +               +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSAPWYWPFGSKDNAQVKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +      + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDGYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|89900877|ref|YP_523348.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89345614|gb|ABD69817.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 177

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   +++     L A  +  ++I GHTD    R     N  L   RA + 
Sbjct: 76  FDYDSYVIKPEFQSLIEVHARYLKADKSRKVAIEGHTDE---RGGREYNLALGQKRAEAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              L   GV + ++  +S F   +  +  + +   + NRR +I
Sbjct: 133 RSALGLLGVVDSQVEAVS-FGKEKPAVQGSDEAAMAKNRRAEI 174


>gi|186896079|ref|YP_001873191.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699105|gb|ACC89734.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 560

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           +  P+FD +S+      +T  ++ ++  ++  +    I I GH+D +   ++      LS
Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+K            G         +        NRR+++L+   Q
Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549


>gi|51596997|ref|YP_071188.1| OMPA family outer membrane porin [Yersinia pseudotuberculosis IP
           32953]
 gi|51590279|emb|CAH21916.1| putative OMPA family outer membrane porin [Yersinia
           pseudotuberculosis IP 32953]
          Length = 560

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           +  P+FD +S+      +T  ++ ++  ++  +    I I GH+D +   ++      LS
Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+K            G         +        NRR+++L+   Q
Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549


>gi|153947393|ref|YP_001400334.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP
           31758]
 gi|170023708|ref|YP_001720213.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis
           YPIII]
 gi|152958888|gb|ABS46349.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|169750242|gb|ACA67760.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 560

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           +  P+FD +S+      +T  ++ ++  ++  +    I I GH+D +   ++      LS
Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+K            G         +        NRR+++L+   Q
Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549


>gi|260773224|ref|ZP_05882140.1| sodium-type flagellar protein MotY precursor [Vibrio metschnikovii
           CIP 69.14]
 gi|260612363|gb|EEX37566.1| sodium-type flagellar protein MotY precursor [Vibrio metschnikovii
           CIP 69.14]
          Length = 325

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +D+  S      +   L +I + +      +++ +  +TD S  RN ++    LS  RA 
Sbjct: 218 YDRGNSVELNKASQKRLAQIADYIRYNQDIDLVLVATYTDTSEGRNESQS---LSERRAE 274

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
           S  +     G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 275 SLQRYFRTLGLPEDRI-QVQGYGQRRPIADNASPIGRDKNRRVVISLGRTQ 324


>gi|157146352|ref|YP_001453671.1| outer membrane protein A [Citrobacter koseri ATCC BAA-895]
 gi|157083557|gb|ABV13235.1| hypothetical protein CKO_02111 [Citrobacter koseri ATCC BAA-895]
          Length = 356

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +  D + +          +RR++I 
Sbjct: 285 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343

Query: 338 VE 339
           V+
Sbjct: 344 VK 345


>gi|319943001|ref|ZP_08017284.1| peptidoglycan-associated lipoprotein [Lautropia mirabilis ATCC
           51599]
 gi|319743543|gb|EFV95947.1| peptidoglycan-associated lipoprotein [Lautropia mirabilis ATCC
           51599]
          Length = 189

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  S   LPE   +++     L AH  + I + G+TD          N  L   RA +
Sbjct: 87  FFEFDSFAILPEYQPIIEAHANYLSAHRDKHIVLEGNTDEF---GSREYNLALGQKRADA 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
             + L   GV E+++  IS +   + + +   +   S NRR+DI
Sbjct: 144 VRRALSTLGVDENQMESIS-YGEEKPRASGTDESSRSQNRRVDI 186


>gi|239832781|ref|ZP_04681110.1| peptidoglycan-associated lipoprotein [Ochrobactrum intermedium LMG
           3301]
 gi|239825048|gb|EEQ96616.1| peptidoglycan-associated lipoprotein [Ochrobactrum intermedium LMG
           3301]
          Length = 183

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 74  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 130

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D  +  S NRR  + V +  G
Sbjct: 131 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 182


>gi|110679377|ref|YP_682384.1| peptidoglycan-associated lipoprotein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455493|gb|ABG31698.1| peptidoglycan-associated lipoprotein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 170

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   P     L+   + +LA++     I GH D          N  L   R
Sbjct: 60  DRVLFAVDESSINPAGQTTLEGQAQWLLANTDYTAVIEGHADEQ---GTREYNVALGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +  + L+  GV+ +R+  +S +   R     +S+   + NRR
Sbjct: 117 ANAVREYLISRGVAGNRLQTVS-YGKERPIEICSSEECYAKNRR 159


>gi|224584423|ref|YP_002638221.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468950|gb|ACN46780.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 358

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|254786950|ref|YP_003074379.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901]
 gi|237683752|gb|ACR11016.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901]
          Length = 311

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 223 GILISIIDQRNT--PMFDKS-SSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPF 277
           G+L +  DQ       F    +          L +I  ++ H  +     I  H  A   
Sbjct: 169 GLLPANFDQLKRTSLYFVVGYTDKLSRAATQKLDQIILLVKHDKAINQFIIDAHASAE-- 226

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
                DN  LS  RA      L+  G+ E ++  +          ++D     + NRR+ 
Sbjct: 227 -GTRIDNLELSKTRADLVRDYLVGHGIPESQLV-VRWHGERYPVASNDSSSGRAKNRRVT 284

Query: 336 I 336
           +
Sbjct: 285 V 285


>gi|90579228|ref|ZP_01235038.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
 gi|90440061|gb|EAS65242.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
          Length = 326

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE 264
           +V + I    +   T   + +++    ++    K  ++   P    + ++          
Sbjct: 187 VVEEPIYVNQVTIATLEELRLTVPFAFDSSTITKGDAAKLAPFEQRLKEQDAA------- 239

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323
            I + GHTD+   R     N  LS+ RA +    L +   +   RI    G        +
Sbjct: 240 KIYVVGHTDS---RGAESYNQTLSVKRAEAVADALRQHLKMDSTRIIA-QGRGESEPVAS 295

Query: 324 S--DPMNSANRRIDIL 337
           +  +   + NRR+DI+
Sbjct: 296 NQTEEGRAQNRRVDII 311


>gi|116620548|ref|YP_822704.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223710|gb|ABJ82419.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 262

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 22/228 (9%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
           + +T    Q +  +       N QQ E  +N + +  E+ ++   +     S   +    
Sbjct: 26  VRNTTAPVQAKVDQVGDQTTRNGQQIEDTRNQVKQVDERAQNGISAAQERASSADQHAAT 85

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
               + E +    +  +L +             A N +K V+       +  S+      
Sbjct: 86  ADQHAGEAMTRANQANQLGE---------QNTQALNSLKSVVSNIDDYKLQTSVAVP--- 133

Query: 235 PMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             F  +      +    L K+  +V +     I++ G+TD +        N  LS  RA 
Sbjct: 134 --FQFNKYNLSSDAKQDLDKLASDVKSDKRYFIAVEGYTDKT---GSKAYNSALSRRRAD 188

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           +  + L+    V   RI  I G    +      +    + NRR+++ V
Sbjct: 189 AVVEYLVAQHDVPIYRIHMI-GLGDEKPVDEAKNRAARAKNRRVEVKV 235


>gi|330968986|gb|EGH69052.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 96

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS- 313
              L  + +  + + G+TD++     A  N  LS  RA S    L++ GV   R+  +  
Sbjct: 1   AAFLQENPDRKVIVEGYTDST---GSASYNQSLSERRANSVRMALVRMGVDPARVVTMGY 57

Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340
           G  +      S+   + NRR+++ + +
Sbjct: 58  GKEYPVADNTSNSGRAMNRRVEVTISN 84


>gi|319639245|ref|ZP_07993996.1| outer membrane protein class 4 [Neisseria mucosa C102]
 gi|317399429|gb|EFV80099.1| outer membrane protein class 4 [Neisseria mucosa C102]
          Length = 253

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE    L  + + L   S + + + GHTD   F    + N  LS  RA  
Sbjct: 91  LFGFDKDNLRPEAQENLDALAQRLSNESVQTVRVEGHTD---FMGSEQYNQALSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321
               L+  GV+  +IS + G    + +
Sbjct: 148 VANYLVGHGVASSKISAV-GLGESQAR 173


>gi|148258086|ref|YP_001242671.1| outer membrane lipoprotein omp16 [Bradyrhizobium sp. BTAi1]
 gi|146410259|gb|ABQ38765.1| Outer membrane lipoprotein omp16 precursor
           (peptidoglycan-associated lipoprotein) [Bradyrhizobium
           sp. BTAi1]
          Length = 149

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L+K  + L        +I GH D    R     N  L   R
Sbjct: 41  DRVFFESDQTDLTPQAIATLEKQAQWLQTYPRYSFTIEGHADE---RGTREYNIALGARR 97

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+ + R+  IS +   R     + ++  S NRR
Sbjct: 98  AQSVRNFLVSRGIDQGRMRTIS-YGKERPVAVCNDISCWSQNRR 140


>gi|71279065|ref|YP_267707.1| ompA family protein [Colwellia psychrerythraea 34H]
 gi|71144805|gb|AAZ25278.1| ompA family protein [Colwellia psychrerythraea 34H]
          Length = 352

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +D      F+ +SS    ET+  +Q++ + +       + I GH+ A      A+ N  L
Sbjct: 232 VDVDLNVAFENNSSQIKAETMNDIQRLADFMKEYKNTSVVIEGHSSA---AGSAKYNLAL 288

Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
           S  RA +   +L+ K  + E R+S   GF   +L    +       NRR+
Sbjct: 289 SQKRADAVKSLLINKFDIEESRLSA-KGFGETQLISKGNTAADHELNRRV 337


>gi|84385674|ref|ZP_00988705.1| Conserved hypothetical outer membrane protein [Vibrio splendidus
           12B01]
 gi|84379654|gb|EAP96506.1| Conserved hypothetical outer membrane protein [Vibrio splendidus
           12B01]
          Length = 212

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 13/159 (8%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           ++  + ++++    +L + ++   +  +  +  K  +    R G+L  +        F  
Sbjct: 53  RQGFIQIEQQSDSSELKQALADQSNLGMNQSGCKTWISNQERHGLLARLH-------FGF 105

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
                 P     L ++   L  +   I++ GHTD++     A  N  L L RA +    L
Sbjct: 106 DQHNLSPMGSKALSQLAGELKTNGSAITVDGHTDST---GEAGYNQALGLQRALTTSDGL 162

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           +  GV ++R+  I  F   +   ++      + NRR +I
Sbjct: 163 VADGVEKNRLV-IRSFGESKPIASNATAEGRAKNRRSEI 200


>gi|332664542|ref|YP_004447330.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333356|gb|AEE50457.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 226

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
           CK+   ++ ++ EE+                K+    + +K    L  L +         
Sbjct: 40  CKNQTPKEPVSPEEDPLGAIEDMVNETKALAKEEAARVDEKTQKALESLRSVKFDP---- 95

Query: 218 ETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
           ET    +  +I+  ++  M         F    +  LP     L ++  ++A   E    
Sbjct: 96  ETVGEKLYQAILAGKDLKMEVFLFKTLNFVPEQADVLPAMKPELTQLANIMAAFPEFKFQ 155

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I  HT           N  LS  RA S  + L K GV++ R+    G+    L IA   M
Sbjct: 156 IAAHTAGV---GDHILNLTLSHHRATSIVEALEKMGVAKSRMKA-RGYGD-ELPIADHTM 210

Query: 328 ---NSANRRIDI 336
                AN+RI++
Sbjct: 211 PEGREANQRIEL 222


>gi|51244590|ref|YP_064474.1| peptidoglycan-associated lipoprotein precursor [Desulfotalea
           psychrophila LSv54]
 gi|50875627|emb|CAG35467.1| related to peptidoglycan-associated lipoprotein precursor
           [Desulfotalea psychrophila LSv54]
          Length = 231

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 10/188 (5%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADNIV 212
           G    K      + N +E Y +P +   +       +  L  +   +  T S   A+ + 
Sbjct: 48  GGCNSKKVVAPPTGNAQEEYNIPAIPPAQDENQDYGEEDLPPVVGSLDDTDSNAAAEELA 107

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGH 271
                   +     SI  +     F    ++  PE   V+ +  +VL  +    I++ G+
Sbjct: 108 SKQSEAYLQQHGRSSI--EFQPVYFKFDQTMINPEMQEVIFENAQVLKRNPTLYITVEGN 165

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329
           TD    R     N  L   RA +  + L+  G+ E+RI  +S     R    +    +  
Sbjct: 166 TDD---RGTNEYNMALGEKRAINVEKYLISLGIGENRIRTVS-LGEERPLFPTQTEAAYL 221

Query: 330 ANRRIDIL 337
            NRR D +
Sbjct: 222 YNRRADFI 229


>gi|254284085|ref|ZP_04959053.1| peptidoglycan-associated lipoprotein [gamma proteobacterium
           NOR51-B]
 gi|219680288|gb|EED36637.1| peptidoglycan-associated lipoprotein [gamma proteobacterium
           NOR51-B]
          Length = 180

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   SS     + + +     +L  S E I + GHTD    R     N  L   RA +  
Sbjct: 82  FAFDSSELNDASRMAIDAHIALLLVSDESIRLEGHTDE---RGTREYNLALGERRANAVR 138

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             ++ +GV   RI  IS +         + +   S NRR+++
Sbjct: 139 DYMVANGVPSYRIETIS-YGEENPIAFGSGEANWSENRRVEL 179


>gi|149286|gb|AAA25119.1| outer membrane protein II [Klebsiella pneumoniae]
          Length = 243

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     + A  N +LS
Sbjct: 124 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 180

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 181 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 239

Query: 338 VE 339
           V+
Sbjct: 240 VK 241


>gi|76812099|ref|YP_333598.1| ompA family protein [Burkholderia pseudomallei 1710b]
 gi|76581552|gb|ABA51027.1| ompA family protein [Burkholderia pseudomallei 1710b]
          Length = 290

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 183 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 237

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 238 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290


>gi|304392317|ref|ZP_07374258.1| OmpA/MotB [Ahrensia sp. R2A130]
 gi|303295421|gb|EFL89780.1| OmpA/MotB [Ahrensia sp. R2A130]
          Length = 567

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISI-RGHTDASPFRNIARDNWRLSLDR 291
           F+  S+   P  +  L+++G  L      +   + +  GHTDA         N  LS  R
Sbjct: 454 FNTGSASVTPSQVDKLEELGIALERHIKANPRAVFLMEGHTDAV---GSDVSNLTLSDRR 510

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +  ++L+++           G+    LK+ ++  N+ NRR+ +
Sbjct: 511 AETVARILIENFAVPAENIVTQGYGESDLKVRTEAANADNRRVTV 555


>gi|255280230|ref|ZP_05344785.1| OmpA family protein [Bryantella formatexigens DSM 14469]
 gi|255269321|gb|EET62526.1| OmpA family protein [Bryantella formatexigens DSM 14469]
          Length = 319

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 119/342 (34%), Gaps = 64/342 (18%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           ++++   D++  N   W+  Y+D M  ++  F+++  ++       +A   Y        
Sbjct: 1   MRRRREKDNSGFN--VWR-SYSDMMAGVLLLFVLIMCVSL-----FQAQVNY-------- 44

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                    E +  ER  +    L + +  TK  +  +    +Q+ Q    +  +   S 
Sbjct: 45  ---------EASIKERDEK----LYLQDEYTKKIMSQEDQMADQQNQLASQDELLA--SQ 89

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +     K  L   +E+        D + +    +   L   + +      +  ++  + 
Sbjct: 90  DELLAAQKAQLDALAEQLATQQSQLDEQSATLASQQSALDEKTTQLADQQAQIDKIIGVK 149

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
             +   L    A+N +  V  + T   ++       ++ +FD   +    E   VL  + 
Sbjct: 150 ADVIEALKQEFANNNIS-VEIDETTGSLV-----MDSSVLFDYDETELTEEGQEVLGNVL 203

Query: 257 E----VLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
                VL           I I G+TD+         N  LS  R+ +  + L+  G+S+ 
Sbjct: 204 PIYCSVLMQEEYFPYLAEIIIDGYTDS---SGGYEYNLELSQRRSLAVAEYLL--GISQS 258

Query: 308 RISK-----------ISGFAHHRLKIASD--PMNSANRRIDI 336
            +             ++G +   L +  +      A+RR+++
Sbjct: 259 FLDADDQDALKEKLTVNGHSSSNLVLNENGEEDADASRRVEV 300


>gi|212712403|ref|ZP_03320531.1| hypothetical protein PROVALCAL_03491 [Providencia alcalifaciens DSM
           30120]
 gi|212685149|gb|EEB44677.1| hypothetical protein PROVALCAL_03491 [Providencia alcalifaciens DSM
           30120]
          Length = 582

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 227 SIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
            ++   +  +FD          T V++  +  + A    +I + G+TD +        N 
Sbjct: 442 QMVTLDSLSLFDVGQYTLKTGATKVLVDALLNIKAKPGWLIMVSGYTDNT---GNPELNQ 498

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            LSL RA S    ++++         + G+  +     +      + NRR++I +  +
Sbjct: 499 TLSLKRAESVRDWMIQTSDISPICFAVQGYGQNNPVADNRTADGRTRNRRVEIRLIPQ 556


>gi|37704636|gb|AAR01590.1| OprF [Pseudomonas sp. MFY80]
 gi|37704642|gb|AAR01593.1| OprF [Pseudomonas sp. MFY106]
 gi|37704646|gb|AAR01595.1| OprF [Pseudomonas sp. MFY116]
 gi|37704648|gb|AAR01596.1| OprF [Pseudomonas sp. MFY122]
          Length = 316

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316


>gi|89073281|ref|ZP_01159811.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
 gi|89050991|gb|EAR56455.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
          Length = 326

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 15/135 (11%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
           + + I    +   T   + +++        F   SS    +    L    + L       
Sbjct: 188 IKETINVNQVTIVTLEELRLTVP-------FAFDSSTITTDDAAKLAPFEQRLKEQDTAK 240

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
           I + GHTD+   R     N  LS  RA +    L +   +   RI    G        ++
Sbjct: 241 IYVVGHTDS---RGSESYNQTLSEKRAEAVADTLRQHLNLDSSRIIA-QGRGESDPVASN 296

Query: 325 DPMNSA--NRRIDIL 337
              +    NRR+DI+
Sbjct: 297 QTEDGRSQNRRVDII 311


>gi|28898164|ref|NP_797769.1| hypothetical protein VP1390 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366463|ref|ZP_05778902.1| OmpA family protein [Vibrio parahaemolyticus K5030]
 gi|260878509|ref|ZP_05890864.1| OmpA family protein [Vibrio parahaemolyticus AN-5034]
 gi|260897090|ref|ZP_05905586.1| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|28806378|dbj|BAC59653.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087682|gb|EFO37377.1| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091128|gb|EFO40823.1| OmpA family protein [Vibrio parahaemolyticus AN-5034]
 gi|308113073|gb|EFO50613.1| OmpA family protein [Vibrio parahaemolyticus K5030]
          Length = 1580

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 31/206 (15%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            +  +      K    E+   +    +L  +   K     ++ +L+   K          
Sbjct: 531 NKAKQLVNQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEDKLEQALKDARDQ----- 585

Query: 208 ADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPE---TIVVLQKIGEVLAHST 263
           + N +  +L  ++R  GI I          F+               +   +  VL    
Sbjct: 586 SGNQIDAILVNSSRGAGIKIEFA-------FNSREKELKDHASIFKQLAASLANVLEDEP 638

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
              + I GH          + N ++S +RA  A ++LMK   V + R+  I+ F   +  
Sbjct: 639 NLRVEIEGHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFDGRV-SIAAFGESKPV 694

Query: 322 ---------IASDPMNSANRRIDILV 338
                      ++P    NRR+ I +
Sbjct: 695 YVPKQGEKVDRNNPNLRQNRRVVIRI 720


>gi|330864159|emb|CBX74225.1| hypothetical protein YEW_BY08350 [Yersinia enterocolitica W22703]
          Length = 206

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286
            +  PMFD +S    P      + +  +L     H    + I GH+D +     A  N  
Sbjct: 87  TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 142

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340
           +S  RA      L+K+         I G        ++D       NRR+++L+  
Sbjct: 143 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 198


>gi|52842260|ref|YP_096059.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54294942|ref|YP_127357.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila str. Lens]
 gi|54297971|ref|YP_124340.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila str. Paris]
 gi|148359617|ref|YP_001250824.1| peptidoglycan-associated lipoprotein [Legionella pneumophila str.
           Corby]
 gi|296107659|ref|YP_003619360.1| Peptidoglycan-associated lipoprotein precursor [Legionella
           pneumophila 2300/99 Alcoy]
 gi|129597|sp|P26493|PAL_LEGPN RecName: Full=Peptidoglycan-associated lipoprotein; AltName:
           Full=19 kDa surface antigen; AltName: Full=PPL; Flags:
           Precursor
 gi|44129|emb|CAA43033.1| lipoprotein antigen [Legionella pneumophila]
 gi|52629371|gb|AAU28112.1| peptidoglycan associated lipoprotein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53751756|emb|CAH13178.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila str. Paris]
 gi|53754774|emb|CAH16261.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila str. Lens]
 gi|148281390|gb|ABQ55478.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella pneumophila str. Corby]
 gi|295649561|gb|ADG25408.1| Peptidoglycan-associated lipoprotein precursor [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610774|emb|CBX00386.1| peptidoglycan-associated lipoprotein precursor [Legionella
           pneumophila 130b]
          Length = 176

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F    S    + +  +    E L       + I GHTD    R     N  L   RA +
Sbjct: 71  LFAYDDSTLASKYLPSVNAQAEYLKTHPGARVMIAGHTDE---RGSREYNVALGERRADT 127

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
             ++L  +GVS  +I ++  +   R       +  ++ NRR++ +
Sbjct: 128 VAEILRMAGVSRQQI-RVVSYGKERPANYGHDEASHAQNRRVEFI 171


>gi|225075662|ref|ZP_03718861.1| hypothetical protein NEIFLAOT_00678 [Neisseria flavescens
           NRL30031/H210]
 gi|224953084|gb|EEG34293.1| hypothetical protein NEIFLAOT_00678 [Neisseria flavescens
           NRL30031/H210]
          Length = 219

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
               E  R G  I ++   N   F   S+         L    + L    +  ++I GHT
Sbjct: 106 NTNIEVERQGNQIKLVMPENVT-FATGSAALSGHAQSALSAAAQTLVQYPDTTLTINGHT 164

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           D +        N  LS +RA S    L   GVS  R+    G+   +   ++  +   
Sbjct: 165 DNT---GNDAINEPLSRNRAESVAIFLQSRGVSSTRL-STFGYGSRQPIASNATVEGR 218


>gi|190575561|ref|YP_001973406.1| putative peptidoglycan-associated lipoprotein [Stenotrophomonas
           maltophilia K279a]
 gi|254523725|ref|ZP_05135780.1| PAL family outer membrane lipoprotein [Stenotrophomonas sp. SKA14]
 gi|190013483|emb|CAQ47118.1| putative peptidoglycan-associated lipoprotein [Stenotrophomonas
           maltophilia K279a]
 gi|219721316|gb|EED39841.1| PAL family outer membrane lipoprotein [Stenotrophomonas sp. SKA14]
          Length = 172

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++GHTD    R     N  L   R    
Sbjct: 69  FDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDE---RGSRAYNQALGERRGNGV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 126 NSALQANGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168


>gi|194366890|ref|YP_002029500.1| peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia
           R551-3]
 gi|194349694|gb|ACF52817.1| peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia
           R551-3]
          Length = 172

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++GHTD    R     N  L   R    
Sbjct: 69  FDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDE---RGSRAYNQALGERRGNGV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 126 NSALQANGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168


>gi|99080027|ref|YP_612181.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99036307|gb|ABF62919.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 192

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F  + S         LQ+  + +   T    + GHTD+   R     N  LS  RA + 
Sbjct: 91  FFPTNGSTVNAAGRKRLQEWFQSVMPGTRSFVVAGHTDS---RASDEYNMALSQRRADAV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            Q+    G    RI  +  +     ++ +      + NRR++I
Sbjct: 148 AQIGRSVG---ARIKDVRAYGERSPRVPNRGAANLAQNRRVEI 187


>gi|291442513|ref|ZP_06581903.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345408|gb|EFE72364.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 208

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288
           + +   +F K S          +  I   +   +   + + G TD             LS
Sbjct: 91  ELQAAVLFAKDSGRLSDSARSRIAAIAREIEQRAATRVRVTGFTDNLGSSVHGDI---LS 147

Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSA--NRRIDI 336
             RA +   VL      + R   ++    GF   R   ++    S   NRR++I
Sbjct: 148 TQRADAVRDVLT----DDLRSEAVTFETHGFGERRPVASNATEASRRENRRVEI 197


>gi|261380050|ref|ZP_05984623.1| OmpA family protein [Neisseria subflava NJ9703]
 gi|284797260|gb|EFC52607.1| OmpA family protein [Neisseria subflava NJ9703]
          Length = 253

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE    L  + + L   S + + + GHTD   F    + N  LS  RA  
Sbjct: 91  LFGFDKDNLRPEAQENLNALAQRLSNESVQTVRVEGHTD---FMGSEQYNQALSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV+  +IS + G    +
Sbjct: 148 VANYLVGRGVASSKISAV-GLGESQ 171


>gi|46812309|gb|AAT02227.1| outer membrane protein A precursor [Shigella boydii]
          Length = 346

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 275 ERRAQSVVDYLISKGIPVDKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333

Query: 338 VE 339
           V+
Sbjct: 334 VK 335


>gi|86747447|ref|YP_483943.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86570475|gb|ABD05032.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 651

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I + L  + +        I GHTDA        DN  LS  R
Sbjct: 525 FETGSWDIPPDQAAKLQVIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 581

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA  +L +  GV  + ++   G+    LK+ +D     NRR+ +
Sbjct: 582 AESAATLLTQQFGVPAENLTS-QGYGEQYLKVPTDGPERQNRRVTV 626


>gi|37704638|gb|AAR01591.1| OprF [Pseudomonas sp. MFY81]
 gi|37704640|gb|AAR01592.1| OprF [Pseudomonas sp. MFY82]
          Length = 316

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316


>gi|332306543|ref|YP_004434394.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173872|gb|AEE23126.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 366

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +SS         +Q+  + +         I G+  A       + N +LS++RA +
Sbjct: 254 LFDNNSSKLKNIDSASVQEFVDFMRRYGSTDAVIEGYASA---PGTEQYNMKLSVERAEA 310

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
             Q L++   +   R+  + G+   +L   ++   +   NRRI+
Sbjct: 311 VRQYLVEQYNIDSARLEAV-GYGETKLLDKANTREAHQKNRRIE 353


>gi|312884808|ref|ZP_07744500.1| hypothetical protein VIBC2010_03887 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367460|gb|EFP95020.1| hypothetical protein VIBC2010_03887 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 266

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
            F    S    E    L      +  +     I + G++D+      +  N +LS  RA 
Sbjct: 151 FFASGKSSLSSEQRETLSAFYSYIKVADNINRILVDGYSDS---AGSSVVNLQLSRQRAQ 207

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           +A   L   G  E  + ++       L   +   + + NRR+ + +  +
Sbjct: 208 AAADYLQFLGT-EQNLIEVRAHGERYLFNNNASNSGAKNRRVTLRLVRQ 255


>gi|239934074|ref|ZP_04691027.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 205

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288
           + +   +F K S          +  I   +   +   + + G TD             LS
Sbjct: 88  ELQAAVLFAKDSGRLSDSARSRIAAIAREIEQRAATRVRVTGFTDNLGSSVHGDI---LS 144

Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSA--NRRIDI 336
             RA +   VL      + R   ++    GF   R   ++    S   NRR++I
Sbjct: 145 TQRADAVRDVLT----DDLRSEAVTFETHGFGERRPVASNATEASRRENRRVEI 194


>gi|163802824|ref|ZP_02196713.1| sodium-type flagellar protein MotY [Vibrio sp. AND4]
 gi|159173364|gb|EDP58187.1| sodium-type flagellar protein MotY [Vibrio sp. AND4]
          Length = 293

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ +++   LS  RA S
Sbjct: 187 YERQGDQLTKTSKKRLAQIADYVRHNQDIDLVLVSTYTDSTDGKSTSQN---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+SEDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRTYFESLGLSEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292


>gi|114776804|ref|ZP_01451847.1| hypothetical protein SPV1_11331 [Mariprofundus ferrooxydans PV-1]
 gi|114552890|gb|EAU55321.1| hypothetical protein SPV1_11331 [Mariprofundus ferrooxydans PV-1]
          Length = 219

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 28/212 (13%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           L   +  G  L  S        +       P   +     + + +   + +++ +    L
Sbjct: 12  LFDANPDGTPLHSSAPQTVQNQQAAPVSHTPSIDDGKTNDELRAQNDAMKQELKAAEDEL 71

Query: 207 VADNIVKG----VLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
                +       + E        IS         F    +   P+T  VL  I      
Sbjct: 72  ARLQKISHKALPAMLEPHDRLWARIS---------FKSGQTSVEPKTRKVLTAIAGKFLA 122

Query: 262 STEV--ISIRGHTDASPFRNIARDNW---------RLSLDRAYSAYQVLMKSGVSEDRIS 310
                 + IRG++D  P       +           L+  RA +   V++ +G+ +  + 
Sbjct: 123 HPGKMHLEIRGYSDDEPIGGYKHSHKPRHNLKSLQALTQARADAVAAVMIDAGIPQTLVH 182

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340
             +G         ++     S NRR+DI +  
Sbjct: 183 A-TGMGATGFISDNNTAEGRSKNRRVDIHLVT 213


>gi|329948277|ref|ZP_08295121.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328522801|gb|EGF49909.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 490

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 255 IGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
           +   ++       ++I GHTD          N  LS  RA +    L + +G+ +     
Sbjct: 202 VAGQISQYPDGGTLTIVGHTDDVQ---DDAYNQALSEKRANAVKTRLEQLTGLDKWN-PS 257

Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           ++G      +++  +D   +ANRR++I +    G
Sbjct: 258 VAGKGESEPRVSGTTDEARAANRRVEITLTPTGG 291


>gi|37704658|gb|AAR01601.1| OprF [Pseudomonas sp. MFY152]
 gi|37704674|gb|AAR01609.1| OprF [Pseudomonas sp. MFY314]
          Length = 316

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316


>gi|27382260|ref|NP_773789.1| peptidoglycan-associated lipoprotein [Bradyrhizobium japonicum USDA
           110]
 gi|27355431|dbj|BAC52414.1| peptidoglycan-associated lipoprotein [Bradyrhizobium japonicum USDA
           110]
          Length = 162

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ IV L+K  + L        +I GH D    R     N  L   R
Sbjct: 54  DRVFFESDQTDLTPQAIVTLEKQAQWLQTYPRYSFTIEGHADE---RGTREYNIALGARR 110

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+  +R+  IS +   R     + ++  S NRR
Sbjct: 111 AQSVRSFLASRGIDANRMRTIS-YGKERPVAVCNDISCWSQNRR 153


>gi|86132374|ref|ZP_01050968.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85816935|gb|EAQ38119.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 650

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+  + L+K+  V+      VI +R HTD+   R     N  LS  RA S 
Sbjct: 542 FDFDRFNIRPDAALELEKVLAVMREYPNMVIDVRSHTDS---RGNDSYNLSLSDKRAKST 598

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              ++  G+S  RIS   G+   +L          S+  +  NRR + +V
Sbjct: 599 VNYIIAEGISSSRISG-RGYGETQLTNECSNGVQCSEEAHQLNRRSEFIV 647


>gi|148980294|ref|ZP_01815981.1| putative sodium-type flagellar protein MotY precursor [Vibrionales
           bacterium SWAT-3]
 gi|145961313|gb|EDK26623.1| putative sodium-type flagellar protein MotY precursor [Vibrionales
           bacterium SWAT-3]
          Length = 299

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F + +          +  I  ++   +    I I G+TD       +  N +LS  R   
Sbjct: 195 FQQGAVDLTEGQKRTINDISTLVKRDSRIIKILIDGYTDN---SGDSVANLQLSKQRGSD 251

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             Q  M +GVS  ++ +I G      K  +        NRR++I +  +
Sbjct: 252 VAQWFMGNGVS-KQMIEIRGHGDRYPKYDNTTQQGRDKNRRVEIRLVRK 299


>gi|84393843|ref|ZP_00992588.1| putative outer membrane protein [Vibrio splendidus 12B01]
 gi|84375538|gb|EAP92440.1| putative outer membrane protein [Vibrio splendidus 12B01]
          Length = 203

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S    P     +  + E L    +  I I+G+  AS   +    N  LS  RA +
Sbjct: 83  LFAHDSFEVNPIFSDQISTMAEFLETYKSASIEIQGY--ASKVGSNEY-NLDLSKRRANN 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
               L+ +G+  +R+ +I G+   RL+   D    ++ NR++ 
Sbjct: 140 VQDELLSNGIEPERV-RIVGYGEERLENEGDDATSHALNRKVT 181


>gi|294624487|ref|ZP_06703170.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601217|gb|EFF45271.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 400

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T  G LI++ D     +FD   S    +   VL  +G  L   T   + +RGHTDA   +
Sbjct: 280 TPCGYLITLND---RILFDFDKSDIRADAARVLDTLGAALTKVTAKDMQVRGHTDA---K 333

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331
                N  LS  RA +             + +   G    +    +      +P     N
Sbjct: 334 GSDDYNQALSERRANAVLA--ALRARGAAQSANAKGDGESQPVAPNTVNRQDNPGGRQLN 391

Query: 332 RRIDILVED 340
           RR++I +  
Sbjct: 392 RRVEIFLRT 400


>gi|260901886|ref|ZP_05910281.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|308108170|gb|EFO45710.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
          Length = 1580

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 31/199 (15%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
               K    E+   +    +L  +   K     ++ +L+   K          + N +  
Sbjct: 538 NQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEDKLEQALKDARDQ-----SGNQIDA 592

Query: 215 VLFETTRT-GILISIIDQRNTPMFDKSSSIPLPE---TIVVLQKIGEVLAHSTE-VISIR 269
           +L  ++R  GI I          F+               +   +  VL       + I 
Sbjct: 593 ILVNSSRGAGIKIEFA-------FNSREKELKDHASIFKQLAASLANVLEDEPNLRVEIE 645

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK------- 321
           GH          + N ++S +RA  A ++LMK   V + R+  I+ F   +         
Sbjct: 646 GHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFDGRV-SIAAFGESKPVYVPKQGE 701

Query: 322 --IASDPMNSANRRIDILV 338
               ++P    NRR+ I +
Sbjct: 702 KVDRNNPNLRQNRRVVIRI 720


>gi|268679844|ref|YP_003304275.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617875|gb|ACZ12240.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 385

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 116/365 (31%), Gaps = 59/365 (16%)

Query: 33  WKIVYADFMTVLMAFFLVM---------WIIN----------------ATDDDTKKAIEQ 67
           W + YAD M  L+  F+++         +  +                   ++     ++
Sbjct: 14  W-VSYADLMAGLLFVFILLIGAIIIKYVYAQSDLSAIKTDLDAQKKALVMSEEELAQKKR 72

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
                   L+ + +   +      R  +    L  D  +++ S+        +K +    
Sbjct: 73  DVARISDKLIASEQKTLELTTLQARLQEELSKLKSDVILSEESLLAARALLAEKGKALEE 132

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            +    LS  +     +  L  ++E+ +        +  ++   N       +  +L+ K
Sbjct: 133 NDAKLELSAKEIESLKRLLLEVENERDESKGALMVTQNELSNTSNTLKLKQGELALLSQK 192

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-----GILISI------IDQRNTPM 236
                    + +       V    + G+  +  +      G  I+I      I   +  +
Sbjct: 193 LLDTSTAHQRLVEDLNITKVRIKNLTGIRIKVVQELKSKLGQKINIDPNSGAIRLPSGIL 252

Query: 237 FDKSSSIPLPETIVVLQK-----IGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWR 286
           FD  S    PE    L++     +  +L  +        I I GHTD+        +N  
Sbjct: 253 FDVGSYELKPEAKKQLKETLQPYLEVLLNDADIRDNIDHIMIEGHTDS---DGSYMNNLD 309

Query: 287 LSLDRAYSAYQVL----MKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI--LV 338
           LS  RAY+    +            R     G  ++    K   +  N++ RRI+I   +
Sbjct: 310 LSQKRAYAVMAFIYSWDESKNALLQRYISAIGRSYSDRIFKNGLEDKNAS-RRIEIKFSL 368

Query: 339 EDRQG 343
            +++ 
Sbjct: 369 SNKKA 373


>gi|167719458|ref|ZP_02402694.1| ompA family protein [Burkholderia pseudomallei DM98]
          Length = 277

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277


>gi|90421593|ref|YP_529963.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90103607|gb|ABD85644.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 617

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I     + +A +   +  I GHTDA        DN  LS  R
Sbjct: 491 FELGSWEIPPDQAAKLQAIADGLNKSIARNPREVFLIEGHTDAV---GNDTDNLSLSDRR 547

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +A Q+L +  GV  + ++   G+    LK+ +      NRR+ +
Sbjct: 548 AEAAAQLLTQQFGVPAENLTS-QGYGEQYLKVPTQAPERQNRRVTV 592


>gi|302558689|ref|ZP_07311031.1| secreted protein [Streptomyces griseoflavus Tu4000]
 gi|302476307|gb|EFL39400.1| secreted protein [Streptomyces griseoflavus Tu4000]
          Length = 215

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            ++   ++ G  +   T+   S   E +   P L   +   +   K L      I   + 
Sbjct: 30  GAVVAHADDGPGVPPGTEASASAPVEVDPNDPDLKLPEGATLTEPKVLD-----IKQIVE 84

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263
               D   +    + T           +   +F K S+    E    +  I   +   + 
Sbjct: 85  DKSGDERREDTNSDVT--------FALQAEVLFGKDSAKLGAEAKARIATIAGEIKTQNA 136

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + G TD     +   D   LS  RA +   VL +     +   ++ G+        
Sbjct: 137 TKVRVFGFTDNL-GSSAHGDV--LSRQRANAVQAVLGRELSDANITYEVRGYGEQYPIAD 193

Query: 324 SDPMNSA--NRRIDI 336
           +        NRR++I
Sbjct: 194 NSTEAGRKKNRRVEI 208


>gi|116623181|ref|YP_825337.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226343|gb|ABJ85052.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 911

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLS 288
           D      F+ +SSI   +    L ++ ++L+ H    + + GHTD   +   A  N +L+
Sbjct: 30  DDWEEINFEFNSSILS-DGYPSLLRLADLLSQHRDYKVKVTGHTD---YVGSAAYNDKLA 85

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           L RA +    L+K GV + +++  SG       + +        NRR+D+ V D  G
Sbjct: 86  LRRADAVKAFLVKYGVGDAQVT-TSGDGKRSPIVDNKTKEGRFMNRRVDLAVTDGSG 141


>gi|237730913|ref|ZP_04561394.1| outer membrane protein A [Citrobacter sp. 30_2]
 gi|226906452|gb|EEH92370.1| outer membrane protein A [Citrobacter sp. 30_2]
          Length = 356

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +  D + +          +RR++I 
Sbjct: 285 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343

Query: 338 VE 339
           V+
Sbjct: 344 VK 345


>gi|187736002|ref|YP_001878114.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426054|gb|ACD05333.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 478

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 80/253 (31%), Gaps = 30/253 (11%)

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
             +L   E +    V +  G T+                   Q +    +         +
Sbjct: 116 PPELPDLEDMLPEQVVIAPGETSFSADPVSPSPPESLSPKMPQVDMNAVAKGLPEPSPPE 175

Query: 157 LCKSTDLEKSINKEENYFLPPLS----KEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           + KS+    +I   E   + P      K K    +    L D +K +S  ++        
Sbjct: 176 MLKSSASPVTIKTAEPDMVNPDEWYNNKLKGAGGQDDSHLPDGSKSLSQLMAQSSLGKDS 235

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGH 271
                                  +F+ + ++      + + ++  ++  + + I  + GH
Sbjct: 236 GYSRL--------------GADLLFEYNKAVMKNSARLSMLQLAGLMMKNPDTIFIVEGH 281

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-----ISKISGFAHHRLKIA--- 323
           TD+         N  LSL RA +  Q L  +G++  R        I      R  ++   
Sbjct: 282 TDSF---GSEEYNAVLSLMRANAVRQWLKDNGIALTRPNGECRLYIRACGSSRPVVSIRG 338

Query: 324 SDPMNSANRRIDI 336
                +ANRR++I
Sbjct: 339 DRDAQAANRRVEI 351


>gi|110678461|ref|YP_681468.1| OmpA family domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109454577|gb|ABG30782.1| OmpA family domain protein [Roseobacter denitrificans OCh 114]
          Length = 221

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD  S+    E    + +I E L  +   +   + G TDA     +  ++ +L L RA +
Sbjct: 27  FDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVLIGFTDA--VGGVGYND-QLGLRRANA 83

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
               L++ GVS DRI  +S      L ++       NRR+ + +
Sbjct: 84  VSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLNRRVTVTL 127


>gi|84500462|ref|ZP_00998711.1| OmpA domain protein [Oceanicola batsensis HTCC2597]
 gi|84391415|gb|EAQ03747.1| OmpA domain protein [Oceanicola batsensis HTCC2597]
          Length = 309

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++         L ++   +      I ++ GHTDA         N  LS  RA + 
Sbjct: 204 FQSGAAALADREYTSLAELAVYIKGDPARIVALVGHTDAV---GAHDANVALSRRRAEAV 260

Query: 296 YQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
            Q L+   GV+  ++S + +GF        +      NRR++ ++ 
Sbjct: 261 RQRLIDRHGVAGSQVSARGAGFLAPVASNLTALGRERNRRVEAVLL 306


>gi|296156854|ref|ZP_06839691.1| efflux transporter, RND family, MFP subunit [Burkholderia sp.
           Ch1-1]
 gi|295892740|gb|EFG72521.1| efflux transporter, RND family, MFP subunit [Burkholderia sp.
           Ch1-1]
          Length = 558

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F   S+   P++   L  +   L  +      I G+TD+         N +L+  
Sbjct: 453 QTAVFFAVGSASLDPQSAEALAGVARRLLAAPGSRAVISGYTDS---SGTYEANVKLAAA 509

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           RA +    L+ +GV    +++I      R+  +  P  S  RR+D+ +    G
Sbjct: 510 RAATVRSALVVAGVD---VARIDMRRPARIVASDAPDRS--RRVDVTLAPSTG 557


>gi|254564208|ref|YP_003071303.1| Outer membrane lipoprotein omp16 [Methylobacterium extorquens DM4]
 gi|254271486|emb|CAX27501.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium
           extorquens DM4]
          Length = 170

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +++  +   F+  S+   P     L K    L         I GH D    R        
Sbjct: 55  VVNIGDRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS--- 111

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337
           L   RA +    L   G+S  R+  +S +   R     + ++  S NRR + +L
Sbjct: 112 LGARRAQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164


>gi|83312309|ref|YP_422573.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82947150|dbj|BAE52014.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 161

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   S    +    L K    L       +++ GH D    R     N  L   R
Sbjct: 56  DRVFFDFDKSSLRADAKATLDKQAAWLKAYPNYSLTVEGHADE---RGTREYNLALGEKR 112

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A +    L  +G++  R+  +S G        +++   S NRR
Sbjct: 113 ANAVASYLKSAGIAAARVKTVSYGKERPVALGSNEAAWSQNRR 155


>gi|255067169|ref|ZP_05319024.1| OmpA family protein [Neisseria sicca ATCC 29256]
 gi|255048537|gb|EET44001.1| OmpA family protein [Neisseria sicca ATCC 29256]
          Length = 253

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F     I  PE    L  + + L   + + + I GHTD   F      N  LS  RA  
Sbjct: 91  LFGFDKDILRPEAQENLNSLAQRLSNENVQTVRIEGHTD---FMGSEEYNQNLSERRANV 147

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV   ++S  +G    +
Sbjct: 148 VANYLVGRGVPSSKVSA-TGLGESQ 171


>gi|77361038|ref|YP_340613.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875949|emb|CAI87171.1| putative Component of sodium-driven polar flagellar motor
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 292

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283
           S  D   T M +  +SS     +   L KI E L +    E I+I  +TD+        +
Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDPSIESINIASYTDSY---GGRWN 233

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           N  LS  RA +    ++  GV E ++    G    R    +D     + NRR+ I +
Sbjct: 234 NLDLSKTRAKAIKDYMISLGVDETKVH-TDGLGEKRFVDTNDTILGRNKNRRLVIQI 289


>gi|331007788|ref|ZP_08330902.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma
           proteobacterium IMCC1989]
 gi|330418397|gb|EGG92949.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma
           proteobacterium IMCC1989]
          Length = 171

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  SS    ++  +L      L      + + GH D    R     N  L   RA S  
Sbjct: 74  FDFDSSALRADSRSLLDAHAAALKAKPRAVRLEGHADE---RGTREYNIALGERRAQSVR 130

Query: 297 QVLMKSGVSEDRISKISGFAHHRL-KIASDPMN-SANRRIDI 336
             L+  GV+     ++  +   +    AS+      NRR++I
Sbjct: 131 AYLLSRGVTSP--IEVISYGEEKPAANASNDYAWQQNRRVEI 170


>gi|144897998|emb|CAM74862.1| conserved hypothetical protein, secreted [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 198

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   PE+  +L  + + +       +SI GHTD       A+ N+ L L RA   
Sbjct: 97  FQFQSTDLTPESKALLPSVLDEVKARPAPDLSIIGHTDGM---GDAKYNYELGLRRAKEV 153

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             ++   G+   R+ +++        +        + NRR+++ V
Sbjct: 154 QSMVTALGIEP-RMIEVTSHGQSNPLVPEAKGKGEAKNRRVEVTV 197


>gi|94495568|ref|ZP_01302148.1| hypothetical protein SKA58_05950 [Sphingomonas sp. SKA58]
 gi|94424956|gb|EAT09977.1| hypothetical protein SKA58_05950 [Sphingomonas sp. SKA58]
          Length = 290

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 77/264 (29%), Gaps = 18/264 (6%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P + S+             K        S     Q Q    +      +        +  
Sbjct: 32  PADLSATITEPEPAPAEAVKGPTIEGFISARSGDQMQVTGEDGANNVVAIGEATVVRASG 91

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                G++      L   +             + ++A +   + +DL  K +S +    A
Sbjct: 92  GFLGLGRETLGPDALLNGLPVSVETVQGA---QGLVATRIALKNKDL--KTASMIRNGTA 146

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHST 263
               +         G  ++ IDQ N        FD   +   P+    L           
Sbjct: 147 QGFAEQSAATEALRG-RVADIDQYNVKATTNVNFDTGKTALSPQAKSDLCATAASAEQMD 205

Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
             +  + G+TD++        N  LS  RA      L +       R+   +G +  +  
Sbjct: 206 NALLLVVGYTDST---GPEEYNQMLSEKRAGRVVNYLQQHCNWKPYRMLTPTGMSEAQPI 262

Query: 322 IASDPMN--SANRRIDILVEDRQG 343
            ++D     + NRR+ + +   +G
Sbjct: 263 ASNDTEQGKAENRRVSVNILVSKG 286


>gi|90419554|ref|ZP_01227464.1| conserved hypothetical protein, OmpA family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336491|gb|EAS50232.1| conserved hypothetical protein, OmpA family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 388

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPE----TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S+    E       +   I  V+A + +    I GHTDA       R N  LS  R
Sbjct: 272 FNFGSAEITQEEVGDLRALADAIARVIAENPDETFLIEGHTDAV---GSERANLALSDRR 328

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A      L +   V  + +    G+    LK+ +   N  NRR+ +
Sbjct: 329 ADGVATALTQYFDVPPENLV-TQGYGEQDLKVDTQAENRENRRVTV 373


>gi|325105157|ref|YP_004274811.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324974005|gb|ADY52989.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 587

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   S   P+  ++L  +  ++  +    I +  HTD    R     N  LS  RA SA
Sbjct: 477 YDFDKSNIRPDAALILDNVVSIMKQNPSLKIELSSHTDC---RGNNAYNLILSDARARSA 533

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
              ++++G+ ++R+    G+   +L          S+  +  NRR ++ V 
Sbjct: 534 VAYIVRNGIEKNRLVA-KGYGETKLLNNCYDGVRCSEVEHQRNRRTELRVL 583


>gi|309789305|ref|ZP_07683896.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
 gi|308922840|gb|EFP68356.1| chemotaxis motB domain protein [Shigella dysenteriae 1617]
          Length = 111

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           MT +MAFFLVMW+I+ +       I +YF       +T    I + ++P      +    
Sbjct: 1   MTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQS 60

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138
             + +   N  +LK      + +  R + +    S+ +
Sbjct: 61  QGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPK 98


>gi|306844687|ref|ZP_07477272.1| peptidoglycan-associated lipoprotein [Brucella sp. BO1]
 gi|306274859|gb|EFM56629.1| peptidoglycan-associated lipoprotein [Brucella sp. BO1]
          Length = 168

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D  +  S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 167


>gi|167894145|ref|ZP_02481547.1| ompA family protein [Burkholderia pseudomallei 7894]
          Length = 277

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277


>gi|113461178|ref|YP_719247.1| hemagglutinin antigen [Haemophilus somnus 129PT]
 gi|112823221|gb|ABI25310.1| hemagglutinin antigen [Haemophilus somnus 129PT]
          Length = 355

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     PE    L  +   +A   T  +S+ G+TD          N +LS  RA + 
Sbjct: 242 FAFAKDTLKPEAQQTLDGVYGEIAQLKTAQVSVAGYTDRI---GSDASNLKLSQRRADTV 298

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV++D IS + G+        +               + +RR++I V+  +
Sbjct: 299 ANYLVSKGVAQDAISAV-GYGEANPVTGAKCDAVKGRKALIACLAEDRRVEISVKGSK 355


>gi|15805563|ref|NP_294259.1| hypothetical protein DR_0536 [Deinococcus radiodurans R1]
 gi|6458233|gb|AAF10120.1|AE001912_5 hypothetical protein DR_0536 [Deinococcus radiodurans R1]
          Length = 201

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRA 292
           MF   S++  PE    L    +VL    +    I I GHT  S      R  W LS  RA
Sbjct: 91  MFVGESAVLTPEGETALVDFAQVLRSQKKNWKRIRIEGHTQTSRPNTPER--WDLSATRA 148

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
            +      ++ G+S +R+  ++                 N R++I+VE  Q
Sbjct: 149 SAVAAAFYLRGGISPNRL-AVAARGGQTPFNG-HKFAPQNERVEIVVEYAQ 197


>gi|284036645|ref|YP_003386575.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283815938|gb|ADB37776.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 322

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           + +  + +H  + + + GHTD+         N +LS DRA      L K+G+   +I  +
Sbjct: 238 EAVAYLSSHKDKKLVLTGHTDS---SGPDAVNMQLSRDRANDVKNKLRKTGIEASQIE-V 293

Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVE 339
                   K  +       ANRR+ ++VE
Sbjct: 294 RAKGETEPKADNSTISGRKANRRVSVVVE 322


>gi|153008551|ref|YP_001369766.1| peptidoglycan-associated lipoprotein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560439|gb|ABS13937.1| Peptidoglycan-associated lipoprotein [Ochrobactrum anthropi ATCC
           49188]
          Length = 168

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I++ GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITVEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D  +  S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 167


>gi|145299432|ref|YP_001142273.1| sodium-type polar flagellum motor protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852204|gb|ABO90525.1| sodium-type polar flagellum motor protein [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 291

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +DK+S      +   L  IGE +    S +V+ I  ++D+         N +LS  RA +
Sbjct: 184 YDKNSDQLSLASRRRLAMIGEYVKVDKSIDVVVINAYSDSY---GGRWPNQKLSEKRADA 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             +V +  G+   +I  + G    R   +++     + NRR+ I
Sbjct: 241 IKKVFVDLGIDPGKI-SVEGHGEKRHATSNETEDGRAKNRRVVI 283


>gi|328473741|gb|EGF44576.1| hypothetical protein VP10329_13800 [Vibrio parahaemolyticus 10329]
          Length = 300

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +   L+          D +   +        +L   +D +    F   S+   P+ +  L
Sbjct: 129 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 182

Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +   +L       + + GH D          N +L+ +RA    + L   GV+ DR+ +
Sbjct: 183 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVASDRV-Q 238

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340
                                NRR+ I V  
Sbjct: 239 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 269


>gi|288926326|ref|ZP_06420250.1| OmpA family protein [Prevotella buccae D17]
 gi|288336931|gb|EFC75293.1| OmpA family protein [Prevotella buccae D17]
          Length = 684

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   ++   +   PE+   L ++ ++L  +  V I +  H D   ++     N RLS  R
Sbjct: 516 DNIFYEFDKANLTPESTKALDELVKLLNENPNVTIELSAHCD---YKGSMEYNKRLSQRR 572

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L+  G++ DR++  +G+   R K
Sbjct: 573 AEAVVAYLVGHGIARDRLTP-AGYGKERPK 601


>gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipoprotein [Janthinobacterium sp.
           Marseille]
 gi|151280880|gb|ABR89290.1| peptidoglycan-associated lipoprotein [Janthinobacterium sp.
           Marseille]
          Length = 169

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S I  PE   V++   + L  +    I I+G+TD    R  A  N  L   RA + 
Sbjct: 69  FDFDSYIVKPEFQQVVENHAKYLKSNQGRKIIIQGNTDD---RGGAEYNLALGQKRAEAV 125

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV E ++  +S G    +   + +   + NRR DI+
Sbjct: 126 RKSLSLLGVPETQMEAVSLGKEKPKALGSDEAAWAENRRADIV 168


>gi|37704644|gb|AAR01594.1| OprF [Pseudomonas sp. MFY107]
          Length = 316

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316


>gi|154247009|ref|YP_001417967.1| peptidoglycan-associated lipoprotein [Xanthobacter autotrophicus
           Py2]
 gi|154161094|gb|ABS68310.1| Peptidoglycan-associated lipoprotein [Xanthobacter autotrophicus
           Py2]
          Length = 164

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+    L +  + L   +    +I GH D    R     N  L   R
Sbjct: 55  DRVFFESDQTDLTPQARATLDRQAQWLQQWNRYTFTIEGHADE---RGTREYNIALGAKR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 112 AQSVRDYLAARGIDPARMRTIS-YGKERPVAVCNDISCWSQNRR 154


>gi|256421223|ref|YP_003121876.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256036131|gb|ACU59675.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 778

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 81/257 (31%), Gaps = 33/257 (12%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P   N   A     D       S   +  ++ ++ +     +            +R   +
Sbjct: 529 PVVTNPRQAVSAPIDIPGAAPTSHPAEPVVAKNDPVAAPVKEEPAKEPKSAAPVRRGPGS 588

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
                  +                  + +   +EK+  K      P    E +   + + 
Sbjct: 589 KTPAPVKKPGVKTPAVAVAAPVVTAPVTEEPVVEKTPEK-APEKTPAKPVETVAVAQPEA 647

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R +    ++ + +      + ++G+ F                   +D +S++   ++  
Sbjct: 648 RQEKEMDEMDAAI-----QHKMEGMEFY------------------YDYNSAVLTTKSRN 684

Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L ++  VL       + +R +TD+   R     N  LS  R Y+  + L++ GV   R+
Sbjct: 685 LLDRVAVVLNQYPDWKLLVRSYTDS---RGSDAYNKDLSALRCYAVIEYLVRKGVPSTRL 741

Query: 310 SKISGFAHHRLKIASDP 326
                +  +  K   DP
Sbjct: 742 -----YYENIGKDPEDP 753


>gi|85374727|ref|YP_458789.1| hypothetical protein ELI_09500 [Erythrobacter litoralis HTCC2594]
 gi|84787810|gb|ABC63992.1| hypothetical protein ELI_09500 [Erythrobacter litoralis HTCC2594]
          Length = 170

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280
            G  I   D      F+  S+         LQ   + L+    V ++I GH D    R  
Sbjct: 61  NGQNIIYFDTDR---FNIDSAD-----AAALQTQAQYLSQYPNVTVTIEGHADE---RGT 109

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
              N  L   RA +A   L+  G+   RIS +S      +  AS P   + NRR + +++
Sbjct: 110 RDYNLALGERRANAAKNYLVSLGIPATRISTVSYGEERPVATASTPEAWAQNRRAVTVVI 169


>gi|260914347|ref|ZP_05920816.1| outer membrane protein A [Pasteurella dagmatis ATCC 43325]
 gi|260631448|gb|EEX49630.1| outer membrane protein A [Pasteurella dagmatis ATCC 43325]
          Length = 341

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A      +++ G+TD          N +LS  RA + 
Sbjct: 228 FAFDKANLKPEAQGVLDGIYGEIAQLQSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 284

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+   IS  +G         +               + +RR++I V+  +
Sbjct: 285 ANYLVSKGVAPQAISA-TGMGESSPVTGNKCDSVKGRKALIACLADDRRVEISVKGNK 341


>gi|300772832|ref|ZP_07082701.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759003|gb|EFK55830.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 650

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
             + GI+  +    +   +D + S   P+   VL ++   +  +    I +  HTD+   
Sbjct: 528 VNKEGIVFVL----DNIYYDFNKSDIRPDAAKVLDQLVNTMTENPTLQIELSSHTDS--- 580

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA 330
           R     N +LS  RA SA   ++  G++++R+    G+   RL          ++  + A
Sbjct: 581 RGSDNYNMKLSDRRAKSAVDYIISKGIAKERLVS-KGYGETRLVNECANGVKCTEEQHQA 639

Query: 331 NRRIDILVE 339
           NRR ++ V 
Sbjct: 640 NRRTEVKVL 648


>gi|254488141|ref|ZP_05101346.1| peptidoglycan-associated lipoprotein [Roseobacter sp. GAI101]
 gi|214045010|gb|EEB85648.1| peptidoglycan-associated lipoprotein [Roseobacter sp. GAI101]
          Length = 171

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F+ + S   P     L      ++ +      I GH D          N  L   R
Sbjct: 61  DRVLFEVNQSNLTPAGQATLDGQATWLITNIDYQAIIEGHADEQ---GTREYNVALGARR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+ +R+ ++  +   R     +++   + NRR
Sbjct: 118 ANAAREYLISRGVAGNRL-RVVSYGKERPIEVCSAEACYAKNRR 160


>gi|254439344|ref|ZP_05052838.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198254790|gb|EDY79104.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 637

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 8/151 (5%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI-LISIIDQRNTPMFDKSSSIPLPETIV 250
           ++ L +     +S    + +       TT   +  I  + +     F+ SS+        
Sbjct: 454 IEKLGEAEEFEVSVTYVEELDPIAALPTTEECLGQIMNVTESRKIRFEPSSATIAGAGAA 513

Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           +L  I E+L   +   I I G+TD+         N RLS  RA +  + L    V     
Sbjct: 514 ILDDIKEILQRCADLRIEIAGYTDSQ---GSEDGNQRLSQQRADAVLEGLRVRRVPVASF 570

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             + G+        ++  +    NRRI+  +
Sbjct: 571 RSV-GYGEADPIADNETADGREANRRIEFSL 600


>gi|146337406|ref|YP_001202454.1| hypothetical protein BRADO0242 [Bradyrhizobium sp. ORS278]
 gi|146190212|emb|CAL74204.1| hypothetical protein BRADO0242 [Bradyrhizobium sp. ORS278]
          Length = 337

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+ +  LQ I + L  +       +  I GHTDA        DN  LS  R
Sbjct: 211 FDTGSWEIAPDQVAKLQVIADGLNQAIQRNPREVYLIEGHTDAV---GNETDNLSLSDRR 267

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  GV  + ++   G+    LK  +   +  NRR+ +
Sbjct: 268 AESVATLLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSRINRRVTV 312


>gi|239929192|ref|ZP_04686145.1| secreted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 195

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            + T  +++   +   T+   S   E +   P L       +   K L      I   + 
Sbjct: 9   GATTAYADESPSVPPGTEATASAPVELDPNDPDLKLPDGATLAEPKVLD-----IKQVVE 63

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263
               D   +    +             +   +F K S+    +    +  I E +   + 
Sbjct: 64  DQSGDERREDTNSDVK--------FALQAEVLFGKDSAKLGAQAKARIATIAEEIKTQNA 115

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I + G TD     +   D   LS  RA + + VL +     D   ++ G+        
Sbjct: 116 TRIRVFGFTDNL-GSSAHGDV--LSRQRANAVHGVLEQELNDSDVTYEVRGYGEQYPIAD 172

Query: 324 SDPMNSA--NRRIDI 336
           +        NRR++I
Sbjct: 173 NSTEAGRKKNRRVEI 187


>gi|86134634|ref|ZP_01053216.1| OmpA family protein [Polaribacter sp. MED152]
 gi|85821497|gb|EAQ42644.1| OmpA family protein [Polaribacter sp. MED152]
          Length = 527

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ--RNTP--MFDKSSSI 243
            K+      K+++S+    +  ++      E       I++ DQ   N P   FD + + 
Sbjct: 365 SKENFHQAFKEVASSKENFIEVDL----ELEPIENNHFITVRDQVMLNIPPIYFDLAKAT 420

Query: 244 PLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
               +   LQ + +++    ++I  IR H+D+   R     N RLS  RA +    ++  
Sbjct: 421 IKKTSEQELQMVVDLMNRYPKIIVQIRAHSDS---RGNDSYNLRLSDRRAKATVNWILDK 477

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
           G++++RI  I GF    L          S+  +  NRR + ++ +
Sbjct: 478 GIAKNRIFGI-GFGEEDLVNECSNGVQCSEEKHLENRRTEFVILN 521


>gi|312795445|ref|YP_004028367.1| outer membrane protein [Burkholderia rhizoxinica HKI 454]
 gi|312167220|emb|CBW74223.1| Outer membrane protein [Burkholderia rhizoxinica HKI 454]
          Length = 243

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L  +   +      + +  G+TD     +   ++  LSL RA +
Sbjct: 104 LFDFDKAVLKPAGKEKLDDLASKIQDLNLEVVVATGYTDK--IGSDKYND-HLSLRRAQA 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSA--------NRRIDILV 338
               L+   +  +RI    G       +   +  N          NRR+++ V
Sbjct: 161 VKAYLVSKDIPANRIY-TEGKGKRNPVVTDCNQKNRKALIACLAPNRRVEVEV 212


>gi|237800227|ref|ZP_04588688.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806415|ref|ZP_04593119.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023084|gb|EGI03141.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027528|gb|EGI07583.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 167

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 68  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165


>gi|161503852|ref|YP_001570964.1| outer membrane protein A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865199|gb|ABX21822.1| hypothetical protein SARI_01940 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 358

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  +     PE    L ++   L +       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFTFNKDNLKPEGKQALDQLYNQLNNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 287 EKRAQSVVNYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|157736660|ref|YP_001489343.1| flagellar motor protein MotB [Arcobacter butzleri RM4018]
 gi|157698514|gb|ABV66674.1| flagellar motor component MotB [Arcobacter butzleri RM4018]
          Length = 251

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 6/197 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K            W + YADF+++L+A F+ ++ + + + + +KA+++ F         A
Sbjct: 3   KKKCKCECPAGEKWAVPYADFLSLLLALFIALYALASINVEKQKALKEEF--MKIYNFAA 60

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S  I +++   E       D + +    +  V   +   N+ +       N+  LS+   
Sbjct: 61  SDTIKEQE---ETEKSMTTDPTNEPDEGRKPVVQPLTKQNELENKNAKGGNLLELSDGTF 117

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                + +    +       S D  K +  +    +P  ++  +        +     K 
Sbjct: 118 MSVPAHLIFESGKAELSGADSADFLKKL-AQLISAMPSDTEINVKGYAEDSEVNKSRYKD 176

Query: 200 SSTLSGLVADNIVKGVL 216
           +  LS   A+N+++ +L
Sbjct: 177 ALDLSTARANNVIRELL 193



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHT-DASPFRNIARDNWRLSLDRA 292
           F+   +     ++   L+K+ ++++       I+++G+  D+   ++  +D   LS  RA
Sbjct: 126 FESGKAELSGADSADFLKKLAQLISAMPSDTEINVKGYAEDSEVNKSRYKDALDLSTARA 185

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHR 319
            +  + L+K  +  +R+   SG+  ++
Sbjct: 186 NNVIRELLKYNIPSNRLYS-SGYGSNK 211


>gi|121604226|ref|YP_981555.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120593195|gb|ABM36634.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 376

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 22/119 (18%)

Query: 237 FDK-SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD     +P P     L +I   L        + I G+TD     +    N +LS  RA 
Sbjct: 264 FDSTGLRMPQPR----LDEIAAALGSHGEVNEVVITGYTD--RIGSSQY-NQKLSERRAL 316

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRID---ILVEDR 341
           +    L   G+  +R+    G       +A +D    A       NRR++   I +E R
Sbjct: 317 AVKTYLTGKGIDANRLKA-QGKGEADPVVACTDKKLPALIKCLEPNRRVEVENITIERR 374


>gi|294850947|ref|ZP_06791623.1| outer membrane lipoprotein omp16 [Brucella sp. NVSL 07-0026]
 gi|294821590|gb|EFG38586.1| outer membrane lipoprotein omp16 [Brucella sp. NVSL 07-0026]
          Length = 168

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 116 ATATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167


>gi|260751226|gb|ACX48919.1| cellulase [Streptomyces sp. GS11]
 gi|307574878|gb|ADN52664.1| cellulase [uncultured bacterium]
          Length = 340

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K +   +    A  IV  V    T   +            FD  S+     +   L   
Sbjct: 202 EKAVEEVVEARPATRIVDHVYPAQTTATVQ-----------FDLESAEVKDASN--LSGT 248

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +++    +  + I G++D +     A  N +L+  RA +        G++ +R++ + G
Sbjct: 249 VDLMNTYPQAQVEITGYSDTT---GSAAYNKQLTEKRAKAVADEFQAKGIAAERMT-VKG 304

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
                   +++       NRR++++V
Sbjct: 305 MGEANPVASNETRQGRQMNRRVEVVV 330


>gi|291615184|ref|YP_003525341.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291585296|gb|ADE12954.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 185

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 17/115 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----------TEVISIRGHTDASPFRNIARDNWR 286
           F   + +         +K+  V+                  + GHTD+      A  N  
Sbjct: 73  FKSGTDVLEAGCGAKSKKLANVIIDVKKSLQSQGQKGFKFIVSGHTDS---SGDATKNKE 129

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILV 338
           LS  RA    + L+  GV    I  + G    ++ +  D      + NRR ++ V
Sbjct: 130 LSARRARVMVKELIAQGVDAGDIEAV-GMGSEKMLVKPDNTPAKKAKNRRYEVQV 183


>gi|167845593|ref|ZP_02471101.1| ompA family protein [Burkholderia pseudomallei B7210]
          Length = 277

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 224

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277


>gi|126662166|ref|ZP_01733165.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
 gi|126625545|gb|EAZ96234.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteria bacterium BAL38]
          Length = 642

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 12/126 (9%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
           + G+ ++         FD   S    +    +  +  V+  + +  + I+ HTD+   ++
Sbjct: 518 QDGLDLAKFFSIQNIYFDLDKSEINDKAEKQIAILLYVMQKNPDIKLEIKSHTDSRASKS 577

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANR 332
               N  LS  RA      L+K+G+   RIS   G+   RL          S+  +  NR
Sbjct: 578 Y---NLELSNKRALETSNWLVKNGIDSSRISS-KGYGESRLVNHCSDGVKCSEEEHQMNR 633

Query: 333 RIDILV 338
           R + +V
Sbjct: 634 RSEFIV 639


>gi|37704604|gb|AAR01574.1| OprF [Pseudomonas sp. MFY32]
          Length = 316

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316


>gi|37704602|gb|AAR01573.1| OprF [Pseudomonas sp. MFY31]
          Length = 316

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316


>gi|261868250|ref|YP_003256172.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413582|gb|ACX82953.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 356

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +   P+    L  I   +A      + + G+TD     + A  N +LS  RA + 
Sbjct: 243 FAFNKANLKPQAQKTLDGISHEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 299

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GVS+  IS  +G+        +  D +            +RR++I V
Sbjct: 300 ANYLVSKGVSQQAISA-TGYGKANPVTGNKCDTVKGRKALIACLADDRRVEIAV 352


>gi|149374319|ref|ZP_01892093.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
 gi|149361022|gb|EDM49472.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
          Length = 310

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLS 288
           +R+   F   S+         L  I   +    + E + + GHTD+        DN  LS
Sbjct: 186 KRSRISFASGSTSLSDADRRFLDNIVMYIQADSTVERVFVDGHTDS---SGSRIDNRALS 242

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            +RA +    L+  G+  D +      A     ++  P +  NRR  I ++ R+G
Sbjct: 243 EERANAVADYLIGQGIEAD-LVTTRAHADQYP-VSRRPAD--NRRTTIRLQ-REG 292


>gi|90577944|ref|ZP_01233755.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
 gi|90441030|gb|EAS66210.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
          Length = 352

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E    L+ I + L +     + + GHTD+   R     N +LS +RA + 
Sbjct: 236 FAFDSNTLTAEDQARLEPIAQRLVNFPNSELVVIGHTDS---RGSEAYNQKLSEERAKTV 292

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              LMK   +   R+ K  G        ++D     + NRR+D+
Sbjct: 293 AVYLMKHFNIDASRV-KGEGRGELDPVASNDTAEGRAQNRRVDV 335


>gi|27375465|ref|NP_766994.1| hypothetical protein blr0354 [Bradyrhizobium japonicum USDA 110]
 gi|27348602|dbj|BAC45619.1| blr0354 [Bradyrhizobium japonicum USDA 110]
          Length = 250

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 25/254 (9%)

Query: 88  NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147
             P          +  E +   S    + +           +     + +    + KN  
Sbjct: 8   GGPIAGILEPRSSAAQEGLAMRSAAKGLTAILSIMAIGAALSLPASPAFAGDDGNSKNVT 67

Query: 148 TRDSEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
             +  +     +   L + ++   +    P  S+ K++   R +  + L+      ++ +
Sbjct: 68  EDEIVRALAPPQKKPLTRGLSIAPQADPAPSASETKLIQSVRGRSTRSLSSTEREEIASV 127

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV- 265
             D     +  E T                FD +S+    +++  +Q +G  L       
Sbjct: 128 AKDK--PNIDLEIT----------------FDYNSANISTKSLASVQALGRALTSPDLKG 169

Query: 266 --ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
               + GHTDA         N  LS  RA +  + L++            G+   +LK  
Sbjct: 170 STFVVAGHTDA---AGGESYNQDLSERRADAIKRYLVEKYSISATDLVTVGYGKSKLKDP 226

Query: 324 SDPMNSANRRIDIL 337
           S PM   NRR+ ++
Sbjct: 227 SQPMAEVNRRVQVV 240


>gi|313201413|ref|YP_004040071.1| ompa/motb domain-containing protein [Methylovorus sp. MP688]
 gi|312440729|gb|ADQ84835.1| OmpA/MotB domain protein [Methylovorus sp. MP688]
          Length = 356

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNW 285
           +  ++  +F         E   VL   + E +    EV  + I GHTD     + A  N 
Sbjct: 233 VTLQSEVLFGFDKDNLKEEGKKVLNADVVEKMKAHPEVELVLITGHTD--RIGDEAY-NQ 289

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--ID 335
           +LS  RA +  + L+  G+   R+  + G       +    +           NRR  ++
Sbjct: 290 KLSERRANAVKKYLVSQGIEASRLHAV-GKGEAEPVVDCQGVRGKKAIACLQPNRRVVVE 348

Query: 336 ILVED 340
           I V+ 
Sbjct: 349 IEVQR 353


>gi|260426228|ref|ZP_05780207.1| OmpA family protein [Citreicella sp. SE45]
 gi|260420720|gb|EEX13971.1| OmpA family protein [Citreicella sp. SE45]
          Length = 219

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS         L+     +         + GHTD       A  N +L L RA + 
Sbjct: 75  FAFNSSQLDAGARETLRVQAGWIRQFPEVRFRVYGHTD---LVGSASYNRQLGLARAQAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
              L   G+S  R+  +  +   +  I
Sbjct: 132 VAYLASQGISRSRLEAVVSYGETQPLI 158


>gi|256019218|ref|ZP_05433083.1| outer membrane protein A [Shigella sp. D9]
          Length = 109

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 252 LQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           L  +   L        I + GHTD          N  LS  RA +  Q L+  G+  ++I
Sbjct: 9   LDHLAMNLNSFEKINGIIVIGHTDRL---GSEDYNLTLSRKRAETVRQYLIAKGLPAEKI 65

Query: 310 SKISGFAHHRLKIA---SDPMNSA------NRRIDILVE 339
           + I G    +       ++   S       NRR+++ V+
Sbjct: 66  TSI-GMGKSQPVKKCKYNNDRASLIVCLQPNRRVEVEVD 103


>gi|86157306|ref|YP_464091.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773817|gb|ABC80654.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 170

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 24/152 (15%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
                      + K +       G       ++N   F   +    P     ++++   L
Sbjct: 28  KKAAGQATVGKLEKEINRRLLEEG-------RKNQCSFKTDNDQLEPGCDQKMKRLSNAL 80

Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             + + ++          + GHTD       A  N  LS  RA    + L+  G+ +  I
Sbjct: 81  VDAKKRLNGAGVKNFKFVVSGHTDT---SGSAAHNQELSARRAAVIEKELVARGIPQAEI 137

Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILV 338
             + G    +  +  D      + NRR ++ V
Sbjct: 138 ESV-GMGSKKPLVKPDDTPAKKAKNRRYELQV 168


>gi|253999390|ref|YP_003051453.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253986069|gb|ACT50926.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4]
          Length = 356

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNW 285
           +  ++  +F         E   VL   + E +    EV  + I GHTD     + A  N 
Sbjct: 233 VTLQSEVLFGFDKDNLKEEGKKVLNADVVEKMKAHPEVELVLITGHTD--RIGDEAY-NQ 289

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--ID 335
           +LS  RA +  + L+  G+   R+  + G       +    +           NRR  ++
Sbjct: 290 KLSERRANAVKKYLVSQGIEASRLHAV-GKGEAEPVVDCQGVRGKKAIACLQPNRRVVVE 348

Query: 336 ILVED 340
           I V+ 
Sbjct: 349 IEVQR 353


>gi|315635826|ref|ZP_07891088.1| flagellar motor protein MotB [Arcobacter butzleri JV22]
 gi|315479805|gb|EFU70476.1| flagellar motor protein MotB [Arcobacter butzleri JV22]
          Length = 252

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 6/197 (3%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K            W + YADF+++L+A F+ ++ + + + + +KA+++ F         A
Sbjct: 3   KKKCKCECPAGEKWAVPYADFLSLLLALFIALYALASINVEKQKALKEEF--MKIYNFAA 60

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           S  I +++   E       D + +    +  V   +   N+ +       N+  LS+   
Sbjct: 61  SDTIKEQE---ETEKSMTTDPTNEPDEGRKPVVQPLTKQNELENKNAKGGNLLELSDGTF 117

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                + +    +       S D  K +  +    +P  ++  +        +     K 
Sbjct: 118 MSVPAHLIFESGKAELSGADSADFLKKL-AQLISAMPSDTEINVKGYAEDSEVNKSRYKD 176

Query: 200 SSTLSGLVADNIVKGVL 216
           +  LS   A+N+++ +L
Sbjct: 177 ALDLSTARANNVIRELL 193



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHT-DASPFRNIARDNWRLSLDRA 292
           F+   +     ++   L+K+ ++++       I+++G+  D+   ++  +D   LS  RA
Sbjct: 126 FESGKAELSGADSADFLKKLAQLISAMPSDTEINVKGYAEDSEVNKSRYKDALDLSTARA 185

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHR 319
            +  + L+K  +  +R+   SG+  ++
Sbjct: 186 NNVIRELLKYNIPSNRLYS-SGYGSNK 211


>gi|237712295|ref|ZP_04542776.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA]
 gi|229453616|gb|EEO59337.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA]
          Length = 368

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +  AK     +   V   +++ V  E  +  I            F    +   PE +V +
Sbjct: 227 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 286

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           Q + + +  +      I G  D +     A  N  LS  RA + Y  L+  GV E ++ K
Sbjct: 287 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 344

Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337
           ++          +D M   N   R+ IL
Sbjct: 345 VAMGG-------TDNMFGKNYLNRVVIL 365


>gi|254481114|ref|ZP_05094360.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
 gi|214038909|gb|EEB79570.1| OmpA family protein [marine gamma proteobacterium HTCC2148]
          Length = 209

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 31/203 (15%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENY--FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
           D  +  D       +K++     +   +  L   K   +  ++ ++DL + +++  + ++
Sbjct: 26  DPARPDDPEAHLAAQKALTDIRRFHGDVRELPGLKDSGLVLQENIEDLQQALATLNAKVL 85

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266
              I   +  +                 +FD       PE    L+ +  VL  +    +
Sbjct: 86  DQEIQISLSADL----------------LFDFDQYQVKPEADAELRTLTTVLLETGSAQV 129

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD 325
            I GHTDA         N RLS  RA S  + L+  G +  D   +  G         + 
Sbjct: 130 RIVGHTDAL---GSETYNQRLSEQRAESIKRWLLGPGHIGSDVTIETMGKGESEPVAPNS 186

Query: 326 --------PMNSANRRIDILVED 340
                      + NRR++++++ 
Sbjct: 187 NIDGSDNVDGRALNRRVELVIQT 209


>gi|157962391|ref|YP_001502425.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847391|gb|ABV87890.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 289

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++   +         + ++ E LA+   V  + I  +TD+   R+I   N ++S  RA S
Sbjct: 184 YESGGTELTRYAKSQIARVQEYLAYDQNVDLVLIDAYTDSYGGRSI---NQKVSEQRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                + SG+ ++RI    G    R   ++      S NRR+ I +
Sbjct: 241 VKDFFVASGIGQNRIH-TMGHGEKRHVASNQTIDERSRNRRVVIRI 285


>gi|313203560|ref|YP_004042217.1| ompa/motb domain protein [Paludibacter propionicigenes WB4]
 gi|312442876|gb|ADQ79232.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4]
          Length = 778

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           SG + D I      E      L +I    N            P+    L  +  +L    
Sbjct: 605 SGAMKDLISNKQELEVNDRWKLNNIHYNFNK-------WDIRPDATPTLDSLITLLKIYP 657

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I +  +TD+   R  ++ N  LS  RA S    L+K G+  +R+  + G     +   
Sbjct: 658 IKIELGSYTDS---RGTSQYNDTLSQKRAESVVAYLVKHGIDRNRLIAV-GHGERNILNR 713

Query: 324 -------SDPMNSANRRIDILV 338
                  S+  +  NRR ++ V
Sbjct: 714 CIDGVSCSENEHQVNRRTEVKV 735


>gi|153871121|ref|ZP_02000371.1| lipoprotein [Beggiatoa sp. PS]
 gi|152072413|gb|EDN69629.1| lipoprotein [Beggiatoa sp. PS]
          Length = 285

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   SS          Q+I + +           I I GHTD       A  N  LS  R
Sbjct: 175 FPTGSSEIRGNAKRQCQEIAQAVRDVFKTDKNSKIRIEGHTDNQ---GKADYNRGLSAKR 231

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS----ANRRIDILVEDR 341
           A    + L+K         ++ G+   +     +  +      NRR+ ++  DR
Sbjct: 232 AKKIKEQLVKELNLPAERFEVVGWGEEKPIARCNNGDEHGCFLNRRVTLVRIDR 285


>gi|90409178|ref|ZP_01217293.1| outer membrane protein OmpA [Psychromonas sp. CNPT3]
 gi|90309723|gb|EAS37893.1| outer membrane protein OmpA [Psychromonas sp. CNPT3]
          Length = 326

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 215 VLFETTRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           +     +  ++  I  Q   P      FD  SS  LP    +L +I + LA   +  ISI
Sbjct: 197 IPITQPKETVVSEIKKQPKLPKNIILFFDFDSSEILP--TPLLHQITDQLAKFPKINISI 254

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
             HTD+    ++  D  +L+  RA    +  +   ++++RI+ +           ++   
Sbjct: 255 IAHTDSE-GSDLYND--KLAAKRALEVSKYFLHKNINKNRIN-VLSHGERLPTHDNETKK 310

Query: 327 MNSANRRIDI 336
             + NRR++I
Sbjct: 311 GRAKNRRVEI 320


>gi|88858031|ref|ZP_01132673.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Pseudoalteromonas tunicata D2]
 gi|88819648|gb|EAR29461.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Pseudoalteromonas tunicata D2]
          Length = 299

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+          I  + ++ + +     + + + GHTD          N  LS  R  + 
Sbjct: 197 FEFDKDHLTKTAIATINEVKQAVNEWKPKTVVLSGHTD---LAGQNIYNEGLSTRRVTNV 253

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
              L+ +GV E++I  IS        +        + NRR++I +
Sbjct: 254 LNGLILAGVPENKID-ISALGERHPAVRTPDGTKKAENRRVEIHL 297


>gi|158338606|ref|YP_001519783.1| outer membrane protein A [Acaryochloris marina MBIC11017]
 gi|158308847|gb|ABW30464.1| outer membrane protein A, putative [Acaryochloris marina MBIC11017]
          Length = 507

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   ++         L K+ + +A     T  + + GHT  +   ++ +    LS  RA 
Sbjct: 404 FAVGAANLTSSGRQTLDKLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQS---LSQQRAQ 460

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              Q L + G+   +  +  G           P ++ N+R +I
Sbjct: 461 VVVQYLKRLGI--KQAIQAEGKGFSAPLPGIPPSDARNQRTEI 501


>gi|758341|emb|CAA26037.1| outer membrane protein (ompA) [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 350

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYIQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|73853300|ref|YP_308796.1| OmpA-family lipoprotein [Escherichia coli]
 gi|73476884|gb|AAZ76499.1| OmpA-family lipoprotein [Escherichia coli]
          Length = 267

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              +F+  S     +    L++I    +     + I G TD  P  +    N  LS  RA
Sbjct: 155 GDVLFNFDSWRLTDKANDELERIATKFSQVD-DVRIEGFTD--PLGSKEY-NRILSEKRA 210

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336
            S  +  +  G   +RI + +G            M           NRR++I
Sbjct: 211 ESVKEWFISRGFKAERI-QATGRGADAPVALCPGMVGDGLKECLRPNRRVEI 261


>gi|332978389|gb|EGK15109.1| peptidoglycan-associated lipoprotein [Psychrobacter sp. 1501(2011)]
          Length = 170

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    E   +L +    LA   +  + + GHTD    R     N  L   RA + 
Sbjct: 70  FPFDSSEIDAEAASILNEQVAFLASHPDARVLVAGHTDE---RGSREYNHALGERRAQAV 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
              L   GV++ R+  IS +   R   A   +  ++ NRR ++
Sbjct: 127 RNYLASQGVTDARVETIS-YGEDRPVAAGTDEASHAQNRRAEL 168


>gi|265763305|ref|ZP_06091873.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255913|gb|EEZ27259.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162933|emb|CBW22480.1| putative outer membrane protein [Bacteroides fragilis 638R]
          Length = 399

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR   + + I   +  +V   + K +         +  + D  +   F     +   E+ 
Sbjct: 240 KRPMPVVQYIDRPVDRIVERIVEKRIEVPAVVESHVCDLFDNIH---FAFDKDVITSESE 296

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED- 307
           + L KI ++L         I G+TDA   R     N  LS  RA + Y  L+K  V +  
Sbjct: 297 ITLDKIADLLKSYPDNNFLITGYTDA---RGSDNYNIDLSKRRAKAVYSALLKRQVPQHM 353

Query: 308 -RISKISGFAHHRLKIASDPMNSANRRIDI 336
            +   +   A        D +   +R++ I
Sbjct: 354 LKWRGVGYHASSVPASGPDKVRMGDRKVSI 383


>gi|31747683|gb|AAO38325.1| Lfe140p2 [Leptospirillum ferrooxidans]
          Length = 94

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           + + + ++ +  + I G+  A    +   ++  LS  RA S  +VL+  G++ +R+ +I 
Sbjct: 1   LAQFMRNAPKRNVIIEGY--AYNTGSGEYND-TLSRRRAESVREVLLNDGINPERM-RIR 56

Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
           G           +     ANRR++I+V D+ G
Sbjct: 57  GLGSRYPVATDKTSAGRQANRRVEIIVSDKNG 88


>gi|53713209|ref|YP_099201.1| hypothetical protein BF1919 [Bacteroides fragilis YCH46]
 gi|60681476|ref|YP_211620.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|253566878|ref|ZP_04844330.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216074|dbj|BAD48667.1| hypothetical protein [Bacteroides fragilis YCH46]
 gi|60492910|emb|CAH07686.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|251944441|gb|EES84930.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 399

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR   + + I   +  +V   + K +         +  + D  +   F     +   E+ 
Sbjct: 240 KRPMPVVQYIDRPVDRIVERIVEKRIEVPAVVESHVCDLFDNIH---FAFDKDVITSESE 296

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED- 307
           + L KI ++L         I G+TDA   R     N  LS  RA + Y  L+K  V +  
Sbjct: 297 ITLDKIADLLKSYPDNNFLITGYTDA---RGSDNYNIDLSKRRAKAVYSALLKRQVPQHM 353

Query: 308 -RISKISGFAHHRLKIASDPMNSANRRIDI 336
            +   +   A        D +   +R++ I
Sbjct: 354 LKWRGVGYHASSVPASGPDKVRMGDRKVSI 383


>gi|107024169|ref|YP_622496.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116688504|ref|YP_834127.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|105894358|gb|ABF77523.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116646593|gb|ABK07234.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
          Length = 85

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   LA      + I GHTD          N  LS  RA +    L+   +   +++  +
Sbjct: 1   MAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TT 56

Query: 314 GFAHHRLKIASDP--MNSANRRID 335
           G    +    +D     + NRRI+
Sbjct: 57  GVGPDQPIAPNDTADGRARNRRIE 80


>gi|37704626|gb|AAR01585.1| OprF [Pseudomonas sp. MFY71]
          Length = 321

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 238 FDFDKSVVKPNSYADIKNLADFMKQYPATHTTVEGHTDSV---GPDAYNQKLSERRANAV 294

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  I G+   R   
Sbjct: 295 KQVLTQQYGVETARVQSI-GYGESRPVA 321


>gi|57505872|ref|ZP_00371797.1| probable periplasmic protein Cj0599 [Campylobacter upsaliensis
           RM3195]
 gi|57015902|gb|EAL52691.1| probable periplasmic protein Cj0599 [Campylobacter upsaliensis
           RM3195]
          Length = 313

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 57/325 (17%)

Query: 30  LGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
              W I YAD M  L+  F+++     +         K I++  N    NL  + + + D
Sbjct: 8   GNFW-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLKIIKENLNTQEANLELSKQALKD 66

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           +++         I   + + +   +  L +  T                    Q    +N
Sbjct: 67  KES---------IVFQLSKELNATANTLNLIHT--------------------QKTELEN 97

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +++  S+  K+     D +  I   +        K      K  K   +    I   LS 
Sbjct: 98  NISTLSKDLKNNIDEKDRQILILLNQIELKEKELKAIQQDFKEAKERVENLSFIRENLSK 157

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-------- 257
            +   + + +  +       IS+       +FDK S I   E  + L+KI          
Sbjct: 158 ELQKKLDENISIDQKTGA--ISL---PAEVLFDKDSFILKDEAKISLKKILSGYLTGILD 212

Query: 258 ---VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKI 312
              +  +    I I GHTD+         N  LS  RAY     +      E   ++   
Sbjct: 213 DENISKNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMSFIYSFYKDERLQKLLMA 268

Query: 313 SGFAHHRLKIASDPMN-SANRRIDI 336
           SG +     + +   +   +RRI+I
Sbjct: 269 SGRSFSVPILKNGVEDKDLSRRIEI 293


>gi|332667996|ref|YP_004450784.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336810|gb|AEE53911.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 542

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 19/245 (7%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
           +D  I    V +  G   +K +   LE+N+F L N       K      S +        
Sbjct: 308 VDARIKPQPVVIINGLVREKGK-GFLESNLFLLHNESDEIFSKARSNALSGEYSMSFPRY 366

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E +I        P + K+  +  K  + ++ ++ ++   +   VA+ I   V    T 
Sbjct: 367 PGEFTIRVNFAEGYPSIEKKVTIDDKTPEVIE-ISFEVDPAI--PVAEPIKPVVTVAKTP 423

Query: 222 TGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP 276
                +    +N     +F    ++        L  + E  A       ++I GHTD   
Sbjct: 424 EPKTEAPTPSQNTAARVLFAFDQAVLNEAARQELAAVAEA-AKKANRYTLTIIGHTDD-- 480

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334
               A  N +LS  RA +        G++      I+        + +D     + NRR+
Sbjct: 481 -AGAAEYNQQLSERRAKAVADYFAAQGLTAK----IAAKGELVPAVTNDSEGNKAKNRRV 535

Query: 335 DILVE 339
           ++++E
Sbjct: 536 EVVLE 540


>gi|270261236|ref|ZP_06189509.1| outer membrane protein A, precursor [Serratia odorifera 4Rx13]
 gi|270044720|gb|EFA17811.1| outer membrane protein A, precursor [Serratia odorifera 4Rx13]
          Length = 359

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 27/135 (20%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   P+    L ++   L+        + + G+TDA       + N +LS
Sbjct: 229 KSDVLFNFNKATLKPQGQQALDQLYSQLSSMDPKDGSVVVLGYTDAV---GSDQYNQKLS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------------PMNSANRRID 335
             RA S    L+  G+  D+IS   G         +                 + +RR++
Sbjct: 286 EKRAQSVVDYLVSKGIPSDKISA-RGMGEADSVTGNTCGYKAGRATKAQIACLAPDRRVE 344

Query: 336 I-------LVEDRQG 343
           I       +V   QG
Sbjct: 345 IEVKGIKDVVTQPQG 359


>gi|146993|gb|AAA24237.1| outer membrane protein II [Escherichia vulneris]
          Length = 244

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 125 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 181

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR++I 
Sbjct: 182 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARPALIDCLAPDRRVEIE 240

Query: 338 VE 339
           V+
Sbjct: 241 VK 242


>gi|323698024|ref|ZP_08109936.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. ND132]
 gi|323457956|gb|EGB13821.1| peptidoglycan-associated lipoprotein [Desulfovibrio desulfuricans
           ND132]
          Length = 184

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S     E+  +L +   +L   +   + I GH D    R     N  L   RA +A
Sbjct: 83  FAFNSYELSDESRSILAQKATILRKFADVNVVIEGHCDE---RGTEEYNLALGERRARAA 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
           Y+ L+  GV  +R+  +S +          ++   + NRR + +++
Sbjct: 140 YEHLVILGVEPERMKIVS-YGEEYPVDPGHNETAWAKNRRDEFVIK 184


>gi|212286442|dbj|BAG82874.1| majour outer mambrane protein OmpA [Bacteroides vulgatus]
          Length = 357

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +  AK     +   V   +++ V  E  +  I            F    +   PE +V +
Sbjct: 216 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 275

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           Q + + +  +      I G  D +     A  N  LS  RA + Y  L+  GV E ++ K
Sbjct: 276 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 333

Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337
           ++          +D M   N   R+ IL
Sbjct: 334 VAMGG-------TDNMFGKNYLNRVVIL 354


>gi|119094108|gb|ABL60938.1| flagellar motor protein MotB [uncultured marine bacterium
           HF10_19P19]
          Length = 110

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LM 77
               P    +W   +AD  T+LMAFF+++      +    K I     N FG      ++
Sbjct: 17  PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLRNAFGVQKVVPIV 76

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITK 108
              KG          S    +   + +  T+
Sbjct: 77  EQPKGTTVLSLNFSPSPSKSVTNEMTQQTTQ 107


>gi|330811386|ref|YP_004355848.1| OmpA family lipoprotein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379494|gb|AEA70844.1| Putative OmpA family lipoprotein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 165

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKSNGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163


>gi|323700324|ref|ZP_08112236.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132]
 gi|323460256|gb|EGB16121.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132]
          Length = 174

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           F  +S++    ++   L ++G  L   A     + I GHTD+         N +LS  RA
Sbjct: 70  FATNSAVITGEQSFRQLDELGRALTSSALRGARMEIGGHTDSV---GSDAYNLQLSRKRA 126

Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            +    L  K G +    + ++G+       +++     + NRR+ I
Sbjct: 127 QAVSDYLNKKYGFTA---AAVTGYGESAPVASNETAEGRAGNRRVVI 170


>gi|239817632|ref|YP_002946542.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239804209|gb|ACS21276.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 205

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +   P +  V+ + +    + S   I + GHTD    +     N  LS  RA   
Sbjct: 104 FEVGGTTLTPASQQVMNEALMAAQSRSGSDIVVTGHTDT---KGALEQNDMLSQRRAQEV 160

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            Q+ ++      RI  + G     L + +        NRR+ I V
Sbjct: 161 AQLFVERQFPAKRIEAV-GRGERELAVPTADEVDEPRNRRVTIEV 204


>gi|113477202|ref|YP_723263.1| OmpA/MotB [Trichodesmium erythraeum IMS101]
 gi|110168250|gb|ABG52790.1| OmpA/MotB [Trichodesmium erythraeum IMS101]
          Length = 302

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 84/268 (31%), Gaps = 21/268 (7%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
            P    +  ID+ + E+I   +V+ +       +  +        +            + 
Sbjct: 38  RPNAFKRPDIDVQLTENIDSENVNSQTEENQVTETLETETTKTTTIETKDAETTTTAKII 97

Query: 149 RDSEKGKDLCKSTDLEKSINKEE---NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
               K      ++    + ++ E   +   P  +  +I     +   Q    KI +T + 
Sbjct: 98  YKPSKVNIETTTSTKNPATDRTETTTSAQQPTANTNRIETRTSRDTEQPTTDKIETTTNT 157

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPM----------FDKSSSIPLPETIVVLQKI 255
           + +    +      +    +++  D +   +          F+ +           +  +
Sbjct: 158 IESTAASQAKPETVSGQTDIVATSDSQEKYLTEAKTLGQIKFEINEVELSSPAKQTVNSL 217

Query: 256 GEVLAHS-TEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
              +       ++I   GHT        A+ N  +S DRA      L +  +    IS  
Sbjct: 218 IPEINKYDPNRVTIKVEGHTSRV---GDAQLNKEISQDRANVVVAYLKEKNLPHQVIS-- 272

Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340
            G  + +    S+P +  N+R  I++  
Sbjct: 273 EGMGYSQPLPNSNPASDINQRTVIILIP 300


>gi|254297563|ref|ZP_04965016.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|157807731|gb|EDO84901.1| ompA family protein [Burkholderia pseudomallei 406e]
          Length = 254

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254


>gi|330448674|ref|ZP_08312322.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492865|dbj|GAA06819.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 180

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S   P  +  L     VL  +    +++ G TD  P  +   ++  LS+ RA   
Sbjct: 50  FGFDKSELTPAEMSRLANAVNVLQQNPSFKVAVVGSTD--PEGSEEYND-ALSMRRAQVV 106

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
              L   G+S  R++ I G     L I +D    N ANRR  +++ D
Sbjct: 107 GDYLQSQGISSSRMTLI-GTGERELFIHTDSRSDNRANRRTQLILLD 152


>gi|261749326|ref|YP_003257011.1| outer membrane protein [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497418|gb|ACX83868.1| outer membrane protein [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 408

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV-LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD       P ++ ++ +I E+ +         I G+TD+         N  LS  RA 
Sbjct: 312 LFDLGKFTLSPNSLEIIDEIYEIMIKKLPNSKFYINGYTDSY---GKHSYNKILSTRRAN 368

Query: 294 SAYQVLMKSGVSEDRI 309
           S ++ L+  G+   R+
Sbjct: 369 SVFEALVSKGIDPSRM 384


>gi|317049504|ref|YP_004117152.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b]
 gi|316951121|gb|ADU70596.1| OmpA/MotB domain protein [Pantoea sp. At-9b]
          Length = 157

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  + S   PE+   + ++   LA +  E + I GHTD          N +LSL R
Sbjct: 49  DKILFGINESELTPESKTTINRMATNLAATGIEHLRIDGHTDNY---GTDSYNEQLSLKR 105

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +      +         +  G        +++     + NRR+ +++
Sbjct: 106 ANAVAAQWAEGASLPRSNIETRGLGKKYPVTSNNSAQGRAQNRRVAVVI 154


>gi|254714557|ref|ZP_05176368.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1]
 gi|254717454|ref|ZP_05179265.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1]
 gi|261219284|ref|ZP_05933565.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1]
 gi|261322345|ref|ZP_05961542.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1]
 gi|260924373|gb|EEX90941.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1]
 gi|261295035|gb|EEX98531.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1]
          Length = 168

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167


>gi|163796931|ref|ZP_02190887.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [alpha proteobacterium BAL199]
 gi|159177678|gb|EDP62229.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [alpha proteobacterium BAL199]
          Length = 165

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS         L+K    L    +  +++ GH D    R     N  L   R
Sbjct: 60  DRVFFALDSSEVAANGRTTLEKQAFWLRKYPQATVTVEGHADE---RGTREYNLALGERR 116

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A +A   L+  GV   RI+ IS G     +  +++   + NRR
Sbjct: 117 AAAARDYLVSLGVDPSRIATISYGKERPDVLGSNEEAWAKNRR 159


>gi|147001|gb|AAA24241.1| outer membrane protein II [Escherichia vulneris]
          Length = 244

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 125 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 181

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR++I 
Sbjct: 182 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARPALIDCLAPDRRVEIE 240

Query: 338 VE 339
           V+
Sbjct: 241 VK 242


>gi|307294752|ref|ZP_07574594.1| peptidoglycan-associated lipoprotein [Sphingobium chlorophenolicum
           L-1]
 gi|306879226|gb|EFN10444.1| peptidoglycan-associated lipoprotein [Sphingobium chlorophenolicum
           L-1]
          Length = 169

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             +  +FD        +   +LQ     L  +    ++I GH D    R     N  L  
Sbjct: 60  SSDRILFDTDQYDVDAQDQQILQSQAAWLQQNPNVRVTIEGHADE---RGTRDYNIALGE 116

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339
            RA +A   L   G+   RI+ +S        + SD    + NRR + + V+
Sbjct: 117 RRANAAKNYLASLGIDAGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTVQ 168


>gi|332529393|ref|ZP_08405354.1| ompa/motb domain-containing protein [Hylemonella gracilis ATCC
           19624]
 gi|332041191|gb|EGI77556.1| ompa/motb domain-containing protein [Hylemonella gracilis ATCC
           19624]
          Length = 203

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRA 292
           T  FD   S   PE I  L  +       T   +I  GHTD+         N +LS+ RA
Sbjct: 96  TVFFDFDKSELKPEAIASLDTLAAKAKGRTVEATIVVGHTDS--IGTPEY-NLKLSVRRA 152

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR--IDILVED 340
            +    L   G++   +    G         +D     + NRR  I++++  
Sbjct: 153 EAVKAHLTAQGINSASVF-TEGKGLTAPARPNDTAEGRAVNRRADIELVIVR 203


>gi|330975320|gb|EGH75386.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 167

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 68  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165


>gi|229895607|ref|ZP_04510778.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis Pestoides A]
 gi|229701413|gb|EEO89441.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis Pestoides A]
          Length = 560

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 232 RNTPMFDKSSSIPLPETIV---VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           +  P+FD +S+     +     +++ +  V  +  + I I GH+D +   ++   N  LS
Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHSDNTGSSSM---NMALS 493

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+K            G         +        NRR+++L+   Q
Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549


>gi|126452529|ref|YP_001066330.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|134277725|ref|ZP_01764440.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|217421747|ref|ZP_03453251.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|237812370|ref|YP_002896821.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|242318072|ref|ZP_04817088.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254179713|ref|ZP_04886312.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|126226171|gb|ABN89711.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|134251375|gb|EBA51454.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|184210253|gb|EDU07296.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|217395489|gb|EEC35507.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|237502710|gb|ACQ95028.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|242141311|gb|EES27713.1| ompA family protein [Burkholderia pseudomallei 1106b]
          Length = 254

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254


>gi|22125427|ref|NP_668850.1| hypothetical protein y1530 [Yersinia pestis KIM 10]
 gi|45442357|ref|NP_993896.1| hypothetical protein YP_2580 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808138|ref|YP_652054.1| hypothetical protein YPA_2144 [Yersinia pestis Antiqua]
 gi|108811590|ref|YP_647357.1| hypothetical protein YPN_1427 [Yersinia pestis Nepal516]
 gi|145599338|ref|YP_001163414.1| hypothetical protein YPDSF_2062 [Yersinia pestis Pestoides F]
 gi|149365180|ref|ZP_01887215.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162421467|ref|YP_001607103.1| OmpA domain-containing protein [Yersinia pestis Angola]
 gi|165926917|ref|ZP_02222749.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939224|ref|ZP_02227774.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011145|ref|ZP_02232043.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212522|ref|ZP_02238557.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398614|ref|ZP_02304138.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421232|ref|ZP_02312985.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424634|ref|ZP_02316387.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467871|ref|ZP_02332575.1| OmpA domain protein [Yersinia pestis FV-1]
 gi|218930004|ref|YP_002347879.1| hypothetical protein YPO2953 [Yersinia pestis CO92]
 gi|229838541|ref|ZP_04458700.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229899106|ref|ZP_04514249.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901867|ref|ZP_04516988.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis Nepal516]
 gi|270490053|ref|ZP_06207127.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294504711|ref|YP_003568773.1| hypothetical protein YPZ3_2601 [Yersinia pestis Z176003]
 gi|21958316|gb|AAM85101.1|AE013756_2 hypothetical [Yersinia pestis KIM 10]
 gi|45437221|gb|AAS62773.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775238|gb|ABG17757.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780051|gb|ABG14109.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115348615|emb|CAL21559.1| putative membrane protein [Yersinia pestis CO92]
 gi|145211034|gb|ABP40441.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149291593|gb|EDM41667.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162354282|gb|ABX88230.1| OmpA domain protein [Yersinia pestis Angola]
 gi|165912824|gb|EDR31451.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921268|gb|EDR38492.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989823|gb|EDR42124.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206453|gb|EDR50933.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960721|gb|EDR56742.1| OmpA domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051118|gb|EDR62526.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056516|gb|EDR66285.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680763|gb|EEO76858.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis Nepal516]
 gi|229687508|gb|EEO79581.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694907|gb|EEO84954.1| putative OMPA family outer membrane porin precursor [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|262362773|gb|ACY59494.1| hypothetical protein YPD4_2587 [Yersinia pestis D106004]
 gi|262366698|gb|ACY63255.1| hypothetical protein YPD8_2582 [Yersinia pestis D182038]
 gi|270338557|gb|EFA49334.1| OmpA family protein [Yersinia pestis KIM D27]
 gi|294355170|gb|ADE65511.1| hypothetical protein YPZ3_2601 [Yersinia pestis Z176003]
 gi|320014496|gb|ADV98067.1| putative OMPA family outer membrane porinprecursor [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 560

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 232 RNTPMFDKSSSIPLPETIV---VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           +  P+FD +S+     +     +++ +  V  +  + I I GH+D +   ++   N  LS
Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHSDNTGSSSM---NMALS 493

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
             RA +    L+K            G         +        NRR+++L+   Q
Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549


>gi|313905138|ref|ZP_07838507.1| OmpA/MotB domain protein [Eubacterium cellulosolvens 6]
 gi|313470041|gb|EFR65374.1| OmpA/MotB domain protein [Eubacterium cellulosolvens 6]
          Length = 293

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRG 270
           G+       G   + I+ +N   F+  SS         L     VLA        I+I G
Sbjct: 111 GISDVQVSRGKDYTFIEFKNKAFFEGDSSALTASGRQALDIFCAVLAPEKDQVSQINIMG 170

Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFAHHRLK--IASD 325
           HT A+        R +  L+  RA      + +  V    ++  +  +  +R     +++
Sbjct: 171 HTAAAQSAKTDSIRGDRMLASMRAAEVLVFIQEKNVIEPAKLVSME-YGEYRPIADNSTE 229

Query: 326 PMNSANRRIDILVED 340
              +ANRR++IL+ D
Sbjct: 230 EGRAANRRVEILLID 244



 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W   Y D +T+LM FF++++ +++ D    +   +   P   +    S  +  +      
Sbjct: 16  WMDTYGDLVTLLMTFFVLLYSMSSLDQSKWELFVKSIYPGMTDSDKDSAEMKLDAQVVST 75

Query: 93  SSQNKIDLSIDEHITKNSVDL 113
           SS   I ++ +  + +NSVD 
Sbjct: 76  SSVENI-VAGESTMPENSVDD 95


>gi|160890582|ref|ZP_02071585.1| hypothetical protein BACUNI_03025 [Bacteroides uniformis ATCC 8492]
 gi|156859581|gb|EDO53012.1| hypothetical protein BACUNI_03025 [Bacteroides uniformis ATCC 8492]
          Length = 392

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235
           P    ++     + +L ++        + LVA           T     + + D    P 
Sbjct: 235 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 290

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
              F+  S+   P   + L  + + +        ++ G+ D++        N  LSL RA
Sbjct: 291 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 348

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +   VL+K  G+  DR+   +G  
Sbjct: 349 QAVVDVLVKQYGIPADRLKVDAGGG 373


>gi|77460622|ref|YP_350129.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77384625|gb|ABA76138.1| putative OmpA family lipoprotein [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163


>gi|117919656|ref|YP_868848.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117611988|gb|ABK47442.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 191

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
           A++   +++ GHTD          N++LSL RA +  ++L++  G + +R + + G    
Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VVGKGIS 166

Query: 319 RLKIASD--PMNSANRRIDILVED 340
                +        NRR+  +V +
Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190


>gi|254227964|ref|ZP_04921394.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262396053|ref|YP_003287906.1| outer membrane protein A precursor [Vibrio sp. Ex25]
 gi|151939460|gb|EDN58288.1| outer membrane protein OmpA [Vibrio sp. Ex25]
 gi|262339647|gb|ACY53441.1| outer membrane protein A precursor [Vibrio sp. Ex25]
          Length = 326

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+     +   L    +++    +  + I G++D +     A  N +L+  RA + 
Sbjct: 216 FDLESAEVKDAS--TLSGTVDLMNTYPQAQVEITGYSDTT---GSAAYNQQLTEKRAKAV 270

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                  G++ +R++ + G        +++       NRR++++V
Sbjct: 271 ADEFQAKGIAAERMT-VKGMGEANPVASNETRQGRQMNRRVEVVV 314


>gi|270295719|ref|ZP_06201919.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273123|gb|EFA18985.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 397

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235
           P    ++     + +L ++        + LVA           T     + + D    P 
Sbjct: 240 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 295

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
              F+  S+   P   + L  + + +        ++ G+ D++        N  LSL RA
Sbjct: 296 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 353

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +   VL+K  G+  DR+   +G  
Sbjct: 354 QAVVDVLVKQYGIPADRLKVDAGGG 378


>gi|28871116|ref|NP_793735.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|71736967|ref|YP_275906.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487003|ref|ZP_05641044.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626503|ref|ZP_06459457.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650949|ref|ZP_06482292.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488202|ref|ZP_07006238.1| peptidoglycan-associated outer membrane lipoprotein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|301384813|ref|ZP_07233231.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063533|ref|ZP_07255074.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130603|ref|ZP_07256593.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854366|gb|AAO57430.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|71557520|gb|AAZ36731.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157260|gb|EFH98344.1| peptidoglycan-associated outer membrane lipoprotein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320323045|gb|EFW79134.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329683|gb|EFW85672.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868619|gb|EGH03328.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330872646|gb|EGH06795.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330877972|gb|EGH12121.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330964831|gb|EGH65091.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330988976|gb|EGH87079.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009355|gb|EGH89411.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331016446|gb|EGH96502.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 166

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164


>gi|89094682|ref|ZP_01167618.1| sodium-type flagellar protein MotY, putative [Oceanospirillum sp.
           MED92]
 gi|89081028|gb|EAR60264.1| sodium-type flagellar protein MotY, putative [Oceanospirillum sp.
           MED92]
          Length = 285

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSL 289
           R   +F  +       +   L  I   +    S + I I GH+D+   R +   N  +S 
Sbjct: 176 RTAVLFPSAQWRLSDASRERLDLIALYVKNDDSVKGIYIDGHSDSQGRRLM---NRDMSK 232

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            RA      L+  G+  + +            + ++       NRR+ I +E
Sbjct: 233 RRAEEVTAYLISIGLDPN-MITTRYHGERYPVVPNNSKKNRDRNRRVTIRLE 283


>gi|269103827|ref|ZP_06156524.1| putative OmpA family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163725|gb|EEZ42221.1| putative OmpA family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 229

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
              TR G  I +    N   F    +      +  L  +  V     +  +++ G TD++
Sbjct: 106 ITVTRNGNNIVLN-MPNEITFGVDQTTLNQRAMNALHNVALVAKEYNKTQLNVYGFTDST 164

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                A  N RLS  RA      L++ GV+ +R+    G          ++    + NRR
Sbjct: 165 ---GAASYNQRLSQVRAAEVGNYLIRQGVAANRVVS-QGMGEASPIATNSTAAGRAENRR 220

Query: 334 IDIL 337
           + I+
Sbjct: 221 VQIV 224


>gi|317479876|ref|ZP_07938993.1| OmpA family protein [Bacteroides sp. 4_1_36]
 gi|316903950|gb|EFV25787.1| OmpA family protein [Bacteroides sp. 4_1_36]
          Length = 392

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235
           P    ++     + +L ++        + LVA           T     + + D    P 
Sbjct: 235 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 290

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
              F+  S+   P   + L  + + +        ++ G+ D++        N  LSL RA
Sbjct: 291 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 348

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +   VL+K  G+  DR+   +G  
Sbjct: 349 QAVVDVLVKQYGIPADRLKVDAGGG 373


>gi|260575173|ref|ZP_05843173.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259022433|gb|EEW25729.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 438

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 13/232 (5%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
             +        +   +     ++   +   + +       +R    G+ L    D+E  +
Sbjct: 198 PGATVRTENFDDGSSRTTIERDDGSRIVTIRDASGRVLRRSRIDADGRVLRLIDDME-PV 256

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            + +   LP     +++   + +     A  ++S    L     ++ +        +  +
Sbjct: 257 ERIDVATLPQRDPARLVISTQDENAALRAALLASESDDLGRRFSLRQIREIREVRALAPT 316

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIAR 282
           I    +   FD  S+         L ++G ++A+      +E+  + GHTDA        
Sbjct: 317 I--DVDNITFDTGSAAIKATEAAKLARLGRLVANLIAANPSEMFLVEGHTDAV---GSGS 371

Query: 283 DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            N  LS  RA S    L +  GV  + +  + G+    L+I +     ANRR
Sbjct: 372 SNLALSDRRAESLALALTEYYGVPPENLV-VQGYGETELRIDTLANEPANRR 422


>gi|254197945|ref|ZP_04904367.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|169654686|gb|EDS87379.1| ompA family protein [Burkholderia pseudomallei S13]
          Length = 254

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 201

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254


>gi|118588324|ref|ZP_01545733.1| omp16 protein [Stappia aggregata IAM 12614]
 gi|118439030|gb|EAV45662.1| omp16 protein [Stappia aggregata IAM 12614]
          Length = 161

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F++  S+   +    L    + L   +   I++ GH D    R   + N  L   R
Sbjct: 52  DRVFFEEDQSVLNAQGQATLANQAKWLNRYSQYTITVEGHADE---RGTRQYNIALGARR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A SA   L+  GV+  RI  IS +   R     +  +  S NRR
Sbjct: 109 AQSARDYLVAQGVNASRIKTIS-YGKERPVAVCNDNSCWSQNRR 151


>gi|322433237|ref|YP_004210458.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165629|gb|ADW71331.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 438

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           +   +     +FD  S+   P+  V ++  G+ L    +  + I G+ D    R  A  N
Sbjct: 325 VIFHENVQDALFDYDSAEIRPDAKVAIEHAGKFLTEHPDIQVLIEGYADD---RGSAEYN 381

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
             L   RA +A   LM+ G+  +R+  IS G         ++     NRR
Sbjct: 382 LGLGAQRASAARTALMEQGIPPERLKIISYGKEAQVCVQQTEQCWQQNRR 431


>gi|254260999|ref|ZP_04952053.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254219688|gb|EET09072.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 254

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 201

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254


>gi|89053487|ref|YP_508938.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88863036|gb|ABD53913.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 217

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+    E   +L +    + +      S+ GHTDA    +    N RL   RA +A
Sbjct: 79  FAFNSAELDAEARNILAQQAAFIRNFPEVRFSVYGHTDA--VGSNGY-NQRLGRRRARAA 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L+  GVS  R++ +      +  +A+D     NRR
Sbjct: 136 VNFLVSQGVSRHRLAALVSLGETQPVVATDMEERRNRR 173


>gi|148977601|ref|ZP_01814177.1| sodium-type flagellar protein MotY precursor [Vibrionales bacterium
           SWAT-3]
 gi|145963116|gb|EDK28384.1| sodium-type flagellar protein MotY precursor [Vibrionales bacterium
           SWAT-3]
          Length = 284

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S      +   L +I E +      +++ +  +TD++  + I+++   LS  RA S
Sbjct: 178 YDRNSDQLNKSSRKRLSQIAEYVRYNQDIDLVLVATYTDSADSKGISQN---LSERRAES 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +     G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 235 LREYFKSLGLPEDRI-QVQGYGKRRPIADNSSPIGKDKNRRVVISLGRTQ 283


>gi|319407719|emb|CBI81367.1| Outer membrane lipoprotein omp16 homolog [Bartonella sp. 1-1C]
          Length = 168

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS    +   +L +  E L       I+I GH D    R     N  L   R
Sbjct: 58  DRVFFSLDSSSIESDAEYILARQAEWLLRYPHYSITIEGHADE---RGTREYNLALGQRR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           A +    L+  GVS  R++ IS +   R     D ++  + NRR  ++V +
Sbjct: 115 AVAVRDHLISLGVSSQRMNTIS-YGKERPVAVCDNISCWNQNRRAVLVVNN 164


>gi|319404756|emb|CBI78357.1| Outer membrane lipoprotein omp16 [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 168

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   SS    +   +L +  E L       I+I GH D    R     N  L   R
Sbjct: 58  DRVFFSLDSSSIESDAEYILARQAEWLLRYPHYSITIEGHADE---RGTREYNLALGQRR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           A +    L+  GVS  R++ IS +   R     D ++  + NRR  +++ +
Sbjct: 115 AVAVRDHLISLGVSSQRMNTIS-YGKERPVAVCDNISCWNQNRRAVLVINN 164


>gi|254488269|ref|ZP_05101474.1| OmpA domain protein [Roseobacter sp. GAI101]
 gi|214045138|gb|EEB85776.1| OmpA domain protein [Roseobacter sp. GAI101]
          Length = 632

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+      +  + +I E+L    ++ + I+G+TD+         N  LS  RA S 
Sbjct: 498 FEPGSATIDASALSTMDQIAEILKPCGDIALEIQGYTDSQ---GREEMNLALSQSRAQSV 554

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI-LVEDRQG 343
              L    V         GF       ++D      ANRRI+  L+   +G
Sbjct: 555 LNELRARRVLTASFVA-KGFGEEAPVESNDTEEGREANRRIEFRLIRPEEG 604


>gi|212691276|ref|ZP_03299404.1| hypothetical protein BACDOR_00767 [Bacteroides dorei DSM 17855]
 gi|237726434|ref|ZP_04556915.1| major outer membrane protein OmpA [Bacteroides sp. D4]
 gi|265752003|ref|ZP_06087796.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA]
 gi|212286444|dbj|BAG82875.1| majour outer mambrane protein OmpA [Bacteroides vulgatus]
 gi|212666508|gb|EEB27080.1| hypothetical protein BACDOR_00767 [Bacteroides dorei DSM 17855]
 gi|229434960|gb|EEO45037.1| major outer membrane protein OmpA [Bacteroides dorei 5_1_36/D4]
 gi|263236795|gb|EEZ22265.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA]
          Length = 357

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +  AK     +   V   +++ V  E  +  I            F    +   PE +V +
Sbjct: 216 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 275

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           Q + + +  +      I G  D +     A  N  LS  RA + Y  L+  GV E ++ K
Sbjct: 276 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 333

Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337
           ++          +D M   N   R+ IL
Sbjct: 334 VAMGG-------TDNMFGKNYLNRVVIL 354


>gi|84501653|ref|ZP_00999825.1| peptidoglycan-associated lipoprotein [Oceanicola batsensis
           HTCC2597]
 gi|84390274|gb|EAQ02833.1| peptidoglycan-associated lipoprotein [Oceanicola batsensis
           HTCC2597]
          Length = 171

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E    L    + L  +S     I GH D          N  L   R
Sbjct: 61  DRVLFAVDQSTLSDEARATLNAQAQWLMTNSDYTAVIEGHADEQ---GTREYNLALGARR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A + L+  GV+  R+  ++ +   R     +++   + NRR
Sbjct: 118 ANAAREYLITQGVAASRLKTVT-YGKERPIEICSTESCYAKNRR 160


>gi|296448590|ref|ZP_06890462.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296253908|gb|EFH01063.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 454

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I   L  +     +EV  + GHTDA+       DN  LS  R
Sbjct: 335 FDSGSWTVAPDQAQRLSVIATALNQAIRNNPSEVFLVEGHTDAT---GSDVDNLSLSDRR 391

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL----VEDRQG 343
           A S   +L +            G+     K+     +  NRR+ +     + + QG
Sbjct: 392 AQSVATLLTRDFDVPAENLTTQGYGEQYPKVDVQGPSRENRRVTVRRITPLLNGQG 447


>gi|254181081|ref|ZP_04887679.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|254195586|ref|ZP_04902013.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|169652332|gb|EDS85025.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|184211620|gb|EDU08663.1| ompA family protein [Burkholderia pseudomallei 1655]
          Length = 188

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 65  LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 121

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 122 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 178


>gi|134277521|ref|ZP_01764236.1| OmpA family protein [Burkholderia pseudomallei 305]
 gi|134251171|gb|EBA51250.1| OmpA family protein [Burkholderia pseudomallei 305]
          Length = 224

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214


>gi|71733989|ref|YP_273664.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554542|gb|AAZ33753.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 418

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 196 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 255

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 256 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 311

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 312 RALNRRVEILMTPQ 325


>gi|53720132|ref|YP_109118.1| outer membrane protein a precursor [Burkholderia pseudomallei
           K96243]
 gi|53724795|ref|YP_102249.1| OmpA family protein [Burkholderia mallei ATCC 23344]
 gi|76811968|ref|YP_334381.1| outer membrane protein a [Burkholderia pseudomallei 1710b]
 gi|126442031|ref|YP_001059910.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126452054|ref|YP_001067198.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|167825270|ref|ZP_02456741.1| ompA family protein [Burkholderia pseudomallei 9]
 gi|167919986|ref|ZP_02507077.1| ompA family protein [Burkholderia pseudomallei BCC215]
 gi|226197831|ref|ZP_03793405.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237813303|ref|YP_002897754.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|238561689|ref|ZP_00441673.2| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|242317986|ref|ZP_04817002.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|251766980|ref|ZP_02265557.2| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254177032|ref|ZP_04883689.1| OmpA family protein [Burkholderia mallei ATCC 10399]
 gi|254258959|ref|ZP_04950013.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254360032|ref|ZP_04976302.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|262193316|ref|YP_001079767.2| OmpA family protein [Burkholderia mallei NCTC 10247]
 gi|52210546|emb|CAH36529.1| outer membrane protein a precursor [Burkholderia pseudomallei
           K96243]
 gi|52428218|gb|AAU48811.1| OmpA family protein [Burkholderia mallei ATCC 23344]
 gi|76581421|gb|ABA50896.1| outer membrane protein a precursor [Burkholderia pseudomallei
           1710b]
 gi|126221524|gb|ABN85030.1| outer membrane protein A [Burkholderia pseudomallei 668]
 gi|126225696|gb|ABN89236.1| OmpA family protein [Burkholderia pseudomallei 1106a]
 gi|148029272|gb|EDK87177.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|160698073|gb|EDP88043.1| OmpA family protein [Burkholderia mallei ATCC 10399]
 gi|224812455|gb|ACN64870.1| OmpA family protein [Burkholderia pseudomallei]
 gi|225930019|gb|EEH26032.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237505834|gb|ACQ98152.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|238524141|gb|EEP87576.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|242141225|gb|EES27627.1| OmpA family protein [Burkholderia pseudomallei 1106b]
 gi|243064216|gb|EES46402.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|254217648|gb|EET07032.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|261826008|gb|ABN03326.2| OmpA family protein [Burkholderia mallei NCTC 10229]
 gi|261835034|gb|ABO04145.2| OmpA family protein [Burkholderia mallei NCTC 10247]
          Length = 224

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214


>gi|254208912|ref|ZP_04915260.1| OmpA family protein [Burkholderia mallei JHU]
 gi|147750788|gb|EDK57857.1| OmpA family protein [Burkholderia mallei JHU]
          Length = 193

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 70  LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 127 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 183


>gi|332290809|ref|YP_004429418.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168895|gb|AEE18150.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 674

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 92/247 (37%), Gaps = 20/247 (8%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           +Q +I  +  + +  ++    +G   ++    R E+   +       ++   +   + E+
Sbjct: 433 TQFEIRDADTDELISDAAIKILGYQGKEVYADRKEDAAPFQVPLTVDDYTFIASGDNHEE 492

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G+   +   ++ +    +   +   +  ++  MK K   +DL +K  S    L   N  +
Sbjct: 493 GRMDIQIRGIQTAPYVIKVKRI--FTDSELALMKEKNLSKDLKEKDPSRFELLTDVNAPQ 550

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
            V     + G    +        FD    +   ++  VL ++   L       I I  HT
Sbjct: 551 VVE----KEG---KLFMDVAPIYFDFDLHVVREDSQAVLDRLAAKLTKYKRIKIKISSHT 603

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDP 326
           D+   R  A  N  LS  RA S +  L+  G+   RI +  G+   +  I       ++ 
Sbjct: 604 DS---RGPAAYNMPLSEKRAKSTFDYLVSKGIDASRI-QYQGYGDTKPVINCPVGKCTED 659

Query: 327 MNSANRR 333
            +  NRR
Sbjct: 660 DHQLNRR 666


>gi|225350130|gb|ACN87975.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N  LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLELSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|144900188|emb|CAM77052.1| conserved hypothetical protein, secreted [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 196

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++  LPE   ++ +  ++      V I I GH DA         N R+S  RA   
Sbjct: 95  FSSGTADLLPEAAELVVQAVDLAKKRPHVFIMIAGHADAV---GSDEVNDRISRRRAEVV 151

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
             ++++ G+    I   S        + +        NRR+ + ++
Sbjct: 152 RNLVVERGLPPRAIVASS-HGKRNPLVPTKDGVAEPRNRRVTLTLQ 196


>gi|149185364|ref|ZP_01863681.1| outer membrane protein [Erythrobacter sp. SD-21]
 gi|148831475|gb|EDL49909.1| outer membrane protein [Erythrobacter sp. SD-21]
          Length = 218

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F              L  I +     +   I +RGH+D+        DN   S +RA + 
Sbjct: 71  FADGMPELTEAVRAELATIVDSPQMEAGGAIVLRGHSDSD---GSDEDNLEASRERAEAV 127

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDILVEDRQ 342
               +++G+ E RI+ +  F                ++   + NRR+++ +E  +
Sbjct: 128 RDFFVENGIDEARIT-VIAFGEQNPLAPNALPDGSPNEEGRATNRRVEVTIETGR 181


>gi|265751275|ref|ZP_06087338.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238171|gb|EEZ23621.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 397

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      F+    +    +  +L ++  +L +  +    I G+TDA   R  A+ N RLS
Sbjct: 275 DLLENIHFEFDKDVITLVSHKILDRLAALLKNYPDSHFLITGYTDA---RGSAQYNLRLS 331

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
             RA + Y+ L++ GV    + K  GF +    +   P  + N R
Sbjct: 332 ERRAKAVYKALLERGV-PSHMLKWRGFGNRAALVP--PAAADNIR 373


>gi|147886295|gb|ABQ52380.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 229

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 101 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 157

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 158 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 216

Query: 338 VE 339
           V+
Sbjct: 217 VK 218


>gi|66044664|ref|YP_234505.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|289674679|ref|ZP_06495569.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           syringae FF5]
 gi|302187150|ref|ZP_07263823.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           syringae 642]
 gi|63255371|gb|AAY36467.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|330896136|gb|EGH28357.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330936710|gb|EGH40898.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330959272|gb|EGH59532.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           maculicola str. ES4326]
 gi|330968884|gb|EGH68950.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 167

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 68  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165


>gi|296536906|ref|ZP_06898945.1| peptidoglycan-associated lipoprotein [Roseomonas cervicalis ATCC
           49957]
 gi|296262766|gb|EFH09352.1| peptidoglycan-associated lipoprotein [Roseomonas cervicalis ATCC
           49957]
          Length = 130

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L++    LA      + + GH D    R     N  L   R
Sbjct: 25  DRVFFDTDSSSVRGDQRATLERQAAWLAQYPQVQVLMEGHADE---RGTREYNLALGQRR 81

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
           A SA  VL+  GV+  RIS IS        + S P   + NRR
Sbjct: 82  ANSARDVLVAQGVAPARISTISYGKDRPAALGSTPDAWAQNRR 124


>gi|39996844|ref|NP_952795.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39983732|gb|AAR35122.1| OmpA domain protein [Geobacter sulfurreducens PCA]
 gi|298505859|gb|ADI84582.1| OmpA family outer membrane protein [Geobacter sulfurreducens KN400]
          Length = 524

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD        E    L ++ E +      +   I GH D     ++   N  LSL RA S
Sbjct: 416 FDFDQWSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADN--IGSVGY-NMDLSLKRAIS 472

Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
               L+ + G+   R+  + G    +      +      NRR +IL
Sbjct: 473 VASYLIAREGIDPSRLF-VKGLGKSKPIGDNKTAEGRKLNRRGEIL 517


>gi|312885105|ref|ZP_07744791.1| OmpA family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367234|gb|EFP94800.1| OmpA family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1569

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 19/179 (10%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
               L   S +     K+K   Q +   +   L+ L   + V   + E T   + + +  
Sbjct: 558 ATSSLQRTSLQAAQDDKKKSEYQAVVTSLREELNKLSYQDGVS--IVEGTVGDLKVRL-- 613

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIARDNWRL 287
                 F+      L E     Q IG  LA   HS   I I GHT           N  L
Sbjct: 614 DATHFAFNSDKIQVLEEKGNPYQTIGANLAKIAHSPFQIVIAGHTCDI---GSEEVNLNL 670

Query: 288 SLDRAYSAYQVLMKSGVSEDR-----ISKISGFAHHRLK----IASDPMNSANRRIDIL 337
           S+ RA +    ++ +   E R     +         +        ++   + NRR++IL
Sbjct: 671 SMKRAIAVKNAILNAISGEGRQAWEGMFVTEAHGFSKPLPGNENRNEHERAKNRRVEIL 729


>gi|254500992|ref|ZP_05113143.1| peptidoglycan-associated lipoprotein, putative [Labrenzia
           alexandrii DFL-11]
 gi|222437063|gb|EEE43742.1| peptidoglycan-associated lipoprotein, putative [Labrenzia
           alexandrii DFL-11]
          Length = 158

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F++  S    +    L    + L+  +   I++ GH D    R   + N  L   R
Sbjct: 49  DRVFFEEDQSTLNSQGQATLANQAKWLSRYSKYTITVEGHADE---RGTRQYNIALGARR 105

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L+  GVS  RI  IS +   R     +  +  S NRR
Sbjct: 106 AQAARDYLVSQGVSASRIKTIS-YGKERPVAVCNDNSCWSQNRR 148


>gi|37704628|gb|AAR01586.1| OprF [Pseudomonas sp. MFY72]
          Length = 322

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S     +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 239 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 295

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
             VL+ + GV   R++ + G+   R   
Sbjct: 296 RDVLVNEYGVEGGRVNAV-GYGESRPVA 322


>gi|83594657|ref|YP_428409.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|9408182|emb|CAB99313.1| porin-assoziated protein (PAP) [Rhodospirillum rubrum]
 gi|83577571|gb|ABC24122.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 273

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWR 286
           ++ +     F   S+   PE+   L ++ +  L+ S   + + G+ D       A  N  
Sbjct: 162 VVSEGFKVFFALDSARLSPESEATLDRVSQAFLSGSPASVMVVGYADT---SGPADYNIL 218

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
           LS  RA +  + L + G++ + +  +  +   RL + +        NRR++++
Sbjct: 219 LSQRRAEAVARGLAQRGIASE-VLTLEAYGEERLAVPTADGVVEQQNRRVEVV 270


>gi|329295648|ref|ZP_08252984.1| putative outer membrane lipoprotein [Plautia stali symbiont]
          Length = 157

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  + S   P +   + ++ + LA +  E + +  HTD       A  N +LSL R
Sbjct: 49  DKILFGINESDLTPASKASIAQMAKSLAATGIEHLRVDCHTDNY---GKADYNQQLSLKR 105

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +             +     G        +++     + NRR+ I++
Sbjct: 106 ANAVADQWATGAAIPRQNIVTRGLGMSAPVASNNTAQGRAQNRRVAIVI 154


>gi|90417117|ref|ZP_01225045.1| outer membrane protein OprL precursor [marine gamma proteobacterium
           HTCC2207]
 gi|90331133|gb|EAS46389.1| outer membrane protein OprL precursor [marine gamma proteobacterium
           HTCC2207]
          Length = 177

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           + ++       FD   ++  PE+   L +    L +S   + + GH D    R     N 
Sbjct: 68  VEVMTADTVFYFDFDKALLKPESRAALLEHSASLQNSPRNVRLEGHADE---RGTREYNM 124

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            L   RA +  + L+  GVS   + ++  +   R     ++D     NRR+++
Sbjct: 125 ALGERRANAVKEFLVLQGVSPG-LIEVISYGEERAAAYGSNDDAWGLNRRVEL 176


>gi|331699296|ref|YP_004335535.1| OmpA/MotB domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953985|gb|AEA27682.1| OmpA/MotB domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 222

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S++        +  +G  L AH    + + GH   +P    A     LS  RA + 
Sbjct: 126 FAADSAVLDGAAAETVAGVGRWLVAHPDVRVRLTGHAADTP--GPAEVALALSQQRAQAV 183

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            + L  +GV   R+S   G           P  +A+RR++I
Sbjct: 184 AEALRANGVDPSRVSA-RGVGDADPL----PTPAASRRVEI 219


>gi|169839536|ref|ZP_02872724.1| OmpA/MotB domain protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 172

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F     I     I  L++I  +L     +  +   GHTD++      + N +LSL RA +
Sbjct: 60  FKVDGKIINENEISELKEIVSILNEFGESGTVDFIGHTDST---GTKKYNQKLSLTRARN 116

Query: 295 AYQVLMKSGVSED-RISKISGFAHHRL--KIASDPMNSANRRIDIL 337
           A ++  + G+ +   I +ISG           +D     NRR++IL
Sbjct: 117 AARLFREFGLKDAISIGEISGKGEEDPVDLNETDQGKYINRRVEIL 162


>gi|90578134|ref|ZP_01233945.1| putative outer membrane protein [Vibrio angustum S14]
 gi|90441220|gb|EAS66400.1| putative outer membrane protein [Vibrio angustum S14]
          Length = 196

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SS      +  +  + E LA   +  I ++G+  ASP  N A +   LS  RA +
Sbjct: 76  LFANDSSEIPESYMENISNMSEFLAKYPKTHIELKGY--ASPVGNAAYNV-GLSKRRAAA 132

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDILVEDRQG 343
             Q L+  GV+  RI  I GF       ASD   S N   RR+   V   QG
Sbjct: 133 IQQALITEGVAPSRIKTI-GFGDSDPVKASDAEES-NTLSRRVVAQVVGSQG 182


>gi|289769405|ref|ZP_06528783.1| secreted protein [Streptomyces lividans TK24]
 gi|289699604|gb|EFD67033.1| secreted protein [Streptomyces lividans TK24]
          Length = 210

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            + T  ++   +    T+   S   E +   P L       + + K L      I S + 
Sbjct: 25  GTTTAHADDDPNDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVE 79

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHST 263
               D   +      T        +  +   +F K SS    E    ++ I  E+ A + 
Sbjct: 80  EQSGDERREDTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRAQNA 131

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + G TD     +   D   LS  RA + + VL +S        ++ G+        
Sbjct: 132 TRVRVFGFTDDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIAD 188

Query: 324 SDPMNSA--NRRIDI 336
           +        NRR+++
Sbjct: 189 NSTEAGRKKNRRVEV 203


>gi|269119253|ref|YP_003307430.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613131|gb|ACZ07499.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386]
          Length = 366

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL------AHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           FD   +         ++   + +       + T V+ I GHTD+   +     N +LS  
Sbjct: 230 FDFDKATVKENAKQEIRGAAQQIKNLNQNNNLTGVLDIAGHTDS---KGAKEYNQKLSER 286

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDI 336
           RA +   V  +  G        ++G+   R    +       +P   + NRR+++
Sbjct: 287 RAAAVADVYTQVIGTGNGIRYNVAGYGEDRPVAPNTLPNGKDNPEGRARNRRVEV 341


>gi|261253570|ref|ZP_05946143.1| sodium-type flagellar protein MotY precursor [Vibrio orientalis CIP
           102891]
 gi|260936961|gb|EEX92950.1| sodium-type flagellar protein MotY precursor [Vibrio orientalis CIP
           102891]
          Length = 293

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S     ++   L +I E + H+ ++  + +  +TDA   ++ +++   LS  RA  
Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIKHNQDIDLVLVSTYTDAEDSKSASQN---LSERRAEV 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LQNYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292


>gi|256785509|ref|ZP_05523940.1| secreted protein [Streptomyces lividans TK24]
          Length = 206

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            + T  ++   +    T+   S   E +   P L       + + K L      I S + 
Sbjct: 21  GTTTAHADDDPNDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVE 75

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHST 263
               D   +      T        +  +   +F K SS    E    ++ I  E+ A + 
Sbjct: 76  EQSGDERREDTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRAQNA 127

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + + G TD     +   D   LS  RA + + VL +S        ++ G+        
Sbjct: 128 TRVRVFGFTDDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIAD 184

Query: 324 SDPMNSA--NRRIDI 336
           +        NRR+++
Sbjct: 185 NSTEAGRKKNRRVEV 199


>gi|229496999|ref|ZP_04390704.1| immunogenic 75 kDa protein PG4 [Porphyromonas endodontalis ATCC
           35406]
 gi|229316101|gb|EEN82029.1| immunogenic 75 kDa protein PG4 [Porphyromonas endodontalis ATCC
           35406]
          Length = 691

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 34/136 (25%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +   S+  LPE+ V L +I ++L  +   V+ +  H D          N  LS  RA +
Sbjct: 537 FYAFDSADLLPESKVALDQIAKILQDNPEVVVELSSHADRV---GSDAYNLGLSDRRARA 593

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------------------------- 327
               L   G+  D++ +  G+   R ++ S  +                           
Sbjct: 594 VVDYLKGKGIPADQL-QPKGYGKSRPRVISSALHVLYPQFPEGTILDEAFVTALSEEDKK 652

Query: 328 --NSANRRIDILVEDR 341
             ++ NRR + +V DR
Sbjct: 653 IADALNRRTEFIVIDR 668


>gi|192361426|ref|YP_001981532.1| outer membrane protein [Cellvibrio japonicus Ueda107]
 gi|190687591|gb|ACE85269.1| outer membrane protein [Cellvibrio japonicus Ueda107]
          Length = 154

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD        E+  VL    + L  ++  + + GH D    R     N  L   RA +  
Sbjct: 55  FDFDQYALTAESRAVLLAHADKLKGASVAVRLEGHADE---RGSREYNMALGEKRANAVR 111

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
             L+  GVS   +  +S F   +       +   S NRR++I
Sbjct: 112 DFLVTQGVSGSSLEVVS-FGEEQPVALGHDESAWSQNRRVEI 152


>gi|124386037|ref|YP_001026945.1| OmpA family protein [Burkholderia mallei NCTC 10229]
 gi|217420891|ref|ZP_03452396.1| outer membrane protein A [Burkholderia pseudomallei 576]
 gi|217396303|gb|EEC36320.1| outer membrane protein A [Burkholderia pseudomallei 576]
          Length = 179

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 56  LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 112

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 113 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 169


>gi|115522545|ref|YP_779456.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115516492|gb|ABJ04476.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 628

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+  + LQ I + L  + E        I GHTDA+       DN  LS  R
Sbjct: 503 FESGSWDIAPDQALKLQAIADGLNRAIERNPREVFLIEGHTDAT---GNDTDNLSLSDRR 559

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA  +L +  GV  + ++   G+    LK+ +     ANRR+ +
Sbjct: 560 AESAAALLTQQFGVPAENLTS-QGYGEQYLKVPTQGPELANRRVTV 604


>gi|317491503|ref|ZP_07949939.1| OmpA transmembrane domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316921050|gb|EFV42373.1| OmpA transmembrane domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 351

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   P+    L ++   L++       + + G+TD     +    N +LS
Sbjct: 223 KSDVLFNFNKATLKPQGQQALDQMYAQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSA---------NRRIDILV 338
             RA S    L+  G+  D+IS +  G A        D + +          +RR++I V
Sbjct: 280 EQRAQSVVDYLVSKGIPADKISARGMGKADPVTGSTCDNVKARAALIECLAPDRRVEIEV 339

Query: 339 E 339
           +
Sbjct: 340 K 340


>gi|126728387|ref|ZP_01744203.1| OmpA/MotB family protein [Sagittula stellata E-37]
 gi|126711352|gb|EBA10402.1| OmpA/MotB family protein [Sagittula stellata E-37]
          Length = 168

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE   VL    + L  +++ ++ I GH D          N  L   R
Sbjct: 57  DRVLFAVDQSSLSPEARTVLDGQAQWLMTNSDYMAVIEGHADEQ---GTREYNLALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337
           A +  + L+  GVS+ R+  +S +   R     + +   + NRR + ++
Sbjct: 114 ANAVMEYLVSRGVSQSRLKFVS-YGKERPIEICSEEACYAKNRRAVTVI 161


>gi|254689864|ref|ZP_05153118.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 6 str.
           870]
 gi|256258118|ref|ZP_05463654.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str.
           C68]
 gi|260755394|ref|ZP_05867742.1| OmpA family protein [Brucella abortus bv. 6 str. 870]
 gi|260884410|ref|ZP_05896024.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str.
           C68]
 gi|297248966|ref|ZP_06932674.1| outer membrane lipoprotein omp16 [Brucella abortus bv. 5 str.
           B3196]
 gi|260675502|gb|EEX62323.1| OmpA family protein [Brucella abortus bv. 6 str. 870]
 gi|260873938|gb|EEX81007.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str.
           C68]
 gi|297174099|gb|EFH33456.1| outer membrane lipoprotein omp16 [Brucella abortus bv. 5 str.
           B3196]
          Length = 168

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167


>gi|27375632|ref|NP_767161.1| hypothetical protein blr0521 [Bradyrhizobium japonicum USDA 110]
 gi|27348769|dbj|BAC45786.1| blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I + L  +      V+  I GHTDA        DN  LS  R
Sbjct: 619 FETGSWTIPPDQAAKLQVIADGLNRAIQANPRVVFLIEGHTDAV---GNEVDNLSLSDRR 675

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA ++L +  GV  + ++   G+    LK  +   ++ NRR+ +
Sbjct: 676 AQSAAELLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSAINRRVTV 720


>gi|225628264|ref|ZP_03786298.1| peptidoglycan-associated lipoprotein [Brucella ceti str. Cudo]
 gi|225616110|gb|EEH13158.1| peptidoglycan-associated lipoprotein [Brucella ceti str. Cudo]
          Length = 183

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 74  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 130

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 131 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 182


>gi|167918843|ref|ZP_02505934.1| ompA family protein [Burkholderia pseudomallei BCC215]
          Length = 290

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++L+     + + G+TD          N RLS +RA + 
Sbjct: 183 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 237

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 238 ADYMIAEGIPAAKITAVGRGAAEPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290


>gi|4580965|gb|AAD24552.1|AF117960_1 OprF [Pseudomonas agarici]
          Length = 322

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +    ++G+TD          N +LS  RA++ 
Sbjct: 221 FDFDKSVVKPNSYADIKNLADFMKQYPQTSTVVKGYTDNV---GTDAYNQKLSERRAHAV 277

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            QVL  + GV + R+S + G+  +    ++      + NRR++
Sbjct: 278 AQVLTNQYGVEQSRVSSL-GYGKNNPAASNATKEGQAINRRVE 319


>gi|297518161|ref|ZP_06936547.1| outer membrane protein A [Escherichia coli OP50]
          Length = 171

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 43  KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 99

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 100 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 158

Query: 338 VE 339
           V+
Sbjct: 159 VK 160


>gi|99082204|ref|YP_614358.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99038484|gb|ABF65096.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 167

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE  V+L      L  +   V++I GH D    R     N  L   R
Sbjct: 57  DRVLFLVDQSSISPEAQVILDGQARWLQANPAYVVTIEGHADE---RGTREYNLALGASR 113

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A SA   L+  GV+  RI  +S G        +       NRR
Sbjct: 114 ANSARDYLISKGVAASRIQTVSFGKERPIEICSEQSCYEKNRR 156


>gi|149202853|ref|ZP_01879824.1| peptidoglycan-associated lipoprotein [Roseovarius sp. TM1035]
 gi|149143399|gb|EDM31435.1| peptidoglycan-associated lipoprotein [Roseovarius sp. TM1035]
          Length = 172

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSL 289
           +  +F    S    +    L      L  +T       I GH D          N  L  
Sbjct: 62  DRVLFAVDQSTLGSDAQATLDGQANWL--TTNRDFTAVIEGHADEQ---GTREYNLALGA 116

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            RA +  + L+  GVS +R+ ++  +   R     +++   + NRR
Sbjct: 117 RRANAVQEYLIGRGVSPNRL-RVVSYGKERPIEICSNEACYAKNRR 161


>gi|90415116|ref|ZP_01223071.1| hypothetical OmpA family protein [Photobacterium profundum 3TCK]
 gi|90323761|gb|EAS40380.1| hypothetical OmpA family protein [Photobacterium profundum 3TCK]
          Length = 252

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSS 241
           K + +D+ +  +        D        E  R    + +  +    +       F   S
Sbjct: 85  KSQNEDMVELTARNTELERIDVNYNQAQIEIARLQQDLQLQSEERQALMLEVNVHFRTGS 144

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S   P     L +I E++  S E+   + G+ D    R  ++ N+ LS+ R  +    L 
Sbjct: 145 SDIEPLFQQQLDEIAELMKQSPEMSWQLAGYADR---RGDSQKNFDLSMRRVDAVRDYLE 201

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDI 336
             G+  D++  +  +       +    N  N    RR+ +
Sbjct: 202 SQGIDTDQLL-VDAYGDLEPLKSE--QNFENDFFDRRVTL 238


>gi|294678953|ref|YP_003579568.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294477773|gb|ADE87161.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 311

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F   +S         L  + + LA   E  I++ GHTD          N  LS DR
Sbjct: 201 DDLVFASGASQLAEGDFASLSALADYLATRPEARIALVGHTDN---SGALAANIALSRDR 257

Query: 292 AYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           A +  + L++  GV   ++S   +G+   R    +      NRR++ ++
Sbjct: 258 AAAVRKRLIEKLGVPAGQLSAEGAGWLSPRSSNLTPEGRDKNRRVEAVL 306


>gi|116624434|ref|YP_826590.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227596|gb|ABJ86305.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 508

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 17/235 (7%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
           I +     +  +  +       +  +   +++Q+++   +S     +  +   +  +   
Sbjct: 269 IAERRAQEQNLAAARSTAAAAEQEKLQAQADAQRAKVEADSARAQIDAERAARQQAEAAA 328

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +  +         +     A     R + + +K  S +   + +++   +    T  G++
Sbjct: 329 AAAESRAAAGADRAAATPPAALPAPRREAVDQK--SQVRMRLLESLNGLLPSRDTPRGLI 386

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           +++ DQ         +S+    +  + +    V A     ++I G TD++   +      
Sbjct: 387 VTVPDQG-----FNGASLRTDYSERLARVAAVVAAEQGLRMTIEGSTDSAATES------ 435

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            L++ RAY     +M+ G+    +    G    R   ++   +    NRR++I++
Sbjct: 436 -LAMKRAYEVRDAMMRGGLPSSSVDA-RGLGASRPLTSNGTESGRSTNRRVEIVI 488


>gi|332300857|ref|YP_004442778.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177920|gb|AEE13610.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 665

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD++S    PE    L  +  +L  +    + +  HTD    +     N +LS  RA S 
Sbjct: 538 FDRAS--LRPEGKKSLDYLITLLEQNPDVRLELSSHTDR---KGSQAYNQKLSQRRAQSV 592

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
              L+  G++ DR+    G+   R  + +  M + 
Sbjct: 593 VDYLIAKGIAADRLEA-RGYGKERPYVVTKGMAAR 626


>gi|254700357|ref|ZP_05162185.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513]
 gi|261750850|ref|ZP_05994559.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513]
 gi|261740603|gb|EEY28529.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513]
          Length = 168

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPANRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167


>gi|121604950|ref|YP_982279.1| OmpA domain-containing protein [Polaromonas naphthalenivorans CJ2]
 gi|120593919|gb|ABM37358.1| OmpA domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 179

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   V++     L A+    ++I GHTD          N  L   RA + 
Sbjct: 78  FDFDSYVVKPEFQSVIEAHARYLTANKARKMAIEGHTDEI---GGREYNLALGQKRAEAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
            + L   GV++ ++  +S F   +  +    +   + NRR +I
Sbjct: 135 RRALGLLGVTDSQVEAVS-FGKEKPAVPGLDEASMAKNRRAEI 176


>gi|320324886|gb|EFW80958.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 240

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 9/201 (4%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
             + + + S D +    +        ++ I    +  ++E   + L   ++       S+
Sbjct: 28  SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220
              +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  +    T
Sbjct: 88  RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279
             G+++++ D     +FD   +         + K+ + L  +   +  I G+TD++    
Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200

Query: 280 IARDNWRLSLDRAYSAYQVLM 300
             ++N +LS DRA +   VLM
Sbjct: 201 DRQENLKLSKDRAQAVADVLM 221


>gi|322421507|ref|YP_004200730.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320127894|gb|ADW15454.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 1714

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS----PFRNIARDNWRLSLDR 291
           F    +    E + +L+ + E +       +   GH D      P +    DN  LS +R
Sbjct: 114 FRTGDAEITREYLELLRGVLEKMRGRNNVRLHFVGHADTQQLHGPLQEKFGDNTGLSRER 173

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  +   ++ G+  + I    G    +   ++  +   + NRR+++ V
Sbjct: 174 AGTTAEYCQRALGLPPEAI-SYEGMGDGKPVASNSTEEGRALNRRVEVEV 222


>gi|315122875|ref|YP_004063364.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496277|gb|ADR52876.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 152

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +   FD +S    PE I VL  +G  L  +     I GHTD          +  L L RA
Sbjct: 42  DRIFFDINSYSIRPEDIQVLSSLGSWLEKNGCDFIIEGHTDEQ---GTRNSSLVLGLRRA 98

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
           ++ +   +  G++  R+ KI+ +      +    +   S NRR  I+++
Sbjct: 99  HTVFDYFLARGINSSRM-KITSYGKEIPAVLGYDESAYSKNRRTVIVLQ 146


>gi|307318588|ref|ZP_07598022.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
 gi|306895928|gb|EFN26680.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83]
          Length = 489

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V + + +VL         I GHTDA       + N  LS +R
Sbjct: 375 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 431

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  G+  + +    G+    LKI +D     NRR+ I
Sbjct: 432 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 476


>gi|323528823|ref|YP_004230975.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323385825|gb|ADX57915.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 242

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 17/137 (12%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTEV--ISIRGHTD 273
                  +      +  +F    S P    P     L +I   +     V  +++ GHTD
Sbjct: 110 VAPQTATLENFSLESDALFPFGKSSPESMLPAAKARLDEIAARIRQHEHVSAVTVVGHTD 169

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330
                     N  LSL RA +    L+  G+    I    G      +      ++    
Sbjct: 170 RL---GPESINGPLSLARANTVRDYLVAHGLDGSIIHA-KGVGSSEPRTHCAEGDARALI 225

Query: 331 -----NRRIDILVEDRQ 342
                +R + I VE R+
Sbjct: 226 ACLQQDRYVSITVEGRK 242


>gi|162449046|ref|YP_001611413.1| hypothetical protein sce0776 [Sorangium cellulosum 'So ce 56']
 gi|161159628|emb|CAN90933.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 286

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 80/209 (38%), Gaps = 23/209 (11%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
               + +++ K+L ++    +   + +   +     E+      KK   +   +I + L+
Sbjct: 77  EEQRKSNQRAKELEQTLSQVRGELEAKTAQIEKGEAERQQTEAAKKSGVERVGQIKAELA 136

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---- 260
           G +  ++ KGV       G   + +    + +F  ++    P+   +L ++   L+    
Sbjct: 137 GKLDKHVKKGVAAVAVAEGQ--AFVALSESAVFLPNTVDVSPQGQALLCQVSGALSASGG 194

Query: 261 -HSTEVI-SIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315
             +   + ++ G   + P   +      W LS  RA +  Q L     V+  R+S + G+
Sbjct: 195 GQAPLRVGAVSGPPASVPAPLQAAYPTPWELSAVRAATVTQTLQDKCSVAGARLSAV-GY 253

Query: 316 AHHRLKIAS------DPMNSANRRIDILV 338
           A H    A+       P      R++I V
Sbjct: 254 AEHDPAAAALGETKLPPG-----RVEIAV 277


>gi|91224215|ref|ZP_01259478.1| putative outer membrane protein OmpA [Vibrio alginolyticus 12G01]
 gi|269965628|ref|ZP_06179741.1| putative outer membrane protein OmpA [Vibrio alginolyticus 40B]
 gi|91191126|gb|EAS77392.1| putative outer membrane protein OmpA [Vibrio alginolyticus 12G01]
 gi|269829696|gb|EEZ83932.1| putative outer membrane protein OmpA [Vibrio alginolyticus 40B]
          Length = 326

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            K +   +    A  IV  V    T   +            FD  S+     +   L   
Sbjct: 186 EKAVEEVVEARPATRIVDHVYPAQTTATVQ-----------FDLESAEVKDASN--LSGT 232

Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +++    +  + I G++D +     A  N +L+  RA +        G++ +R++ + G
Sbjct: 233 VDLMNTYPQAQVEITGYSDTT---GSAAYNKQLTEKRAKAVADEFQAKGIAAERMT-VKG 288

Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338
                   +++       NRR++++V
Sbjct: 289 MGEANPVASNETRQGRQMNRRVEVVV 314


>gi|94267383|ref|ZP_01290861.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93452026|gb|EAT02724.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 388

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   +   P     L +  + L    E   I I GHT        A  N +LS  RA +
Sbjct: 279 FEFDQARIRPADQAALGRFAQFLKKYPELEEIEIAGHTCNM---GPAEYNRQLSQRRAAN 335

Query: 295 AYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA 330
             + L++  G++ +R+    G+   +   ++D +   
Sbjct: 336 VVKFLVEKEGIASERLLA-KGYGSDKPIASNDTVAGR 371


>gi|28898249|ref|NP_797854.1| hypothetical protein VP1475 [Vibrio parahaemolyticus RIMD 2210633]
 gi|308125351|ref|ZP_05774746.2| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|28806466|dbj|BAC59738.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308113621|gb|EFO51161.1| outer membrane protein [Vibrio parahaemolyticus K5030]
          Length = 300

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 69  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128

Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +   L+          D +   +        +L   +D +    F   S+   P+ +  L
Sbjct: 129 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 182

Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +   +L       + + GH D          N +L+ +RA    + L   GV+ DR+ +
Sbjct: 183 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 238

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340
                                NRR+ I V  
Sbjct: 239 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 269


>gi|317051743|ref|YP_004112859.1| peptidoglycan-associated lipoprotein [Desulfurispirillum indicum
           S5]
 gi|316946827|gb|ADU66303.1| peptidoglycan-associated lipoprotein [Desulfurispirillum indicum
           S5]
          Length = 187

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+   VL      L ++    I I GH D    R  +  N  L   RA S 
Sbjct: 85  FDFDRSSIRPDARKVLDNNIAYLKNNPNARIVIEGHCDE---RGSSDYNLALGDRRAQSV 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
              L+  G+   R++ IS      +   S+      NRR + +
Sbjct: 142 KDYLVTGGIDASRLTTISYGKERPVDPRSNEWAWQKNRRGEFV 184


>gi|308094644|ref|ZP_05890943.2| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308095659|ref|ZP_05907392.2| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308126475|ref|ZP_05910381.2| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308087973|gb|EFO37668.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308091063|gb|EFO40758.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308107721|gb|EFO45261.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
          Length = 284

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 53  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112

Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +   L+          D +   +        +L   +D +    F   S+   P+ +  L
Sbjct: 113 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 166

Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +   +L       + + GH D          N +L+ +RA    + L   GV+ DR+ +
Sbjct: 167 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 222

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340
                                NRR+ I V  
Sbjct: 223 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 253


>gi|239979676|ref|ZP_04702200.1| secreted protein [Streptomyces albus J1074]
          Length = 186

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+   PE    +Q I  E  A     + + G TD            +LS +RA +
Sbjct: 67  LFGKDSAKLNPEARGRIQAIAEEAQAQQANKVRVFGFTDDL---GSYEHGKKLSKNRADA 123

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            ++ L+K+ +  +   ++ G++       +        NRR+++
Sbjct: 124 VHEELVKT-LGPNVTYEVRGYSEDYPIADNSTEAGRMKNRRVEV 166


>gi|254429703|ref|ZP_05043410.1| OmpA family protein [Alcanivorax sp. DG881]
 gi|196195872|gb|EDX90831.1| OmpA family protein [Alcanivorax sp. DG881]
          Length = 368

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         +    ++ + + L       I + GH D++     A  N  LS  RA S 
Sbjct: 257 FGFDRDTIQGQFSDEIKGVADRLNAGEQGRIRVEGHADST---GPADYNQGLSERRAQSV 313

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
             +++    V  D+I+   GF   +    +      + NRR DI+VE  +
Sbjct: 314 KDRLMKDFSVGADKIT-TEGFGESKPVADNSTADGRAKNRRADIIVETEE 362


>gi|224824631|ref|ZP_03697738.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
 gi|224603124|gb|EEG09300.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002]
          Length = 218

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDR 291
             +FD + +    +    L  +   L        + + GHTD   +    + N  LS  R
Sbjct: 93  KVLFDFNKTNLRADAKNELDPLVSRLKGDANLKSVEVDGHTD---YLGSEKYNQALSQKR 149

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------------PMNSANRRIDILV 338
           A +     + +GV  ++++ + G      K+  +                  +RR+++ +
Sbjct: 150 ADAVKNYFVAAGVPAEKVTAV-GKGESEAKLTDECKAKKFKKKAALQACLEGDRRVELTI 208

Query: 339 ED 340
           + 
Sbjct: 209 DT 210


>gi|163732772|ref|ZP_02140217.1| OmpA family domain protein [Roseobacter litoralis Och 149]
 gi|161394132|gb|EDQ18456.1| OmpA family domain protein [Roseobacter litoralis Och 149]
          Length = 217

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+    E    + +I E L  +   +   + G TDA     +  ++ RL L RA +
Sbjct: 23  FAFDSAELDAEAQAKIVEIAERLKENPSYKPTVLIGFTDA--VGGLGYND-RLGLRRANA 79

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
               L++ GVS DRI  +S      L ++       NRR+ + +
Sbjct: 80  VSAALLEQGVSVDRIGGVSSRGERELLVSVAGPERQNRRVTVTL 123


>gi|126737228|ref|ZP_01752963.1| peptidoglycan-associated lipoprotein [Roseobacter sp. SK209-2-6]
 gi|126721813|gb|EBA18516.1| peptidoglycan-associated lipoprotein [Roseobacter sp. SK209-2-6]
          Length = 172

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E   +LQ     L  +   V++I+GH D          N  L   R
Sbjct: 62  DRVLFPVDQSTLSAEATTILQGQARWLTANPDYVVTIQGHADEQ---GTREYNLALGARR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A  A   L+  G++  RI ++  F   R     +++   + NRR
Sbjct: 119 ANEARDFLIGQGIAGTRI-QVVSFGKERPLEICSAESCYAKNRR 161


>gi|149911636|ref|ZP_01900247.1| OmpA family protein [Moritella sp. PE36]
 gi|149805306|gb|EDM65320.1| OmpA family protein [Moritella sp. PE36]
          Length = 211

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-- 221
           E     +     P    E  +  K+  +  DL+   +  +       +   +  +     
Sbjct: 17  ETIAEIQAKAAAPSTPTETTVMPKQMAQENDLSDDDADGVIAYREQCLNSVLGSQVNNSG 76

Query: 222 -TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
             G  ++ + Q     F  +S++  P     ++ +   + H  +  + I GH+       
Sbjct: 77  CGGDTVNKVRQELKVNFSNNSAVISPRYFADIKALSNFMQHYPDLDVVIEGHSSRQ---G 133

Query: 280 IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
            A  N  LS  RA +   +L+ K G+S  R+S I G+   RL    +   +   NRRI
Sbjct: 134 SAALNMDLSQRRAQAVMDLLINKFGISTSRVSAI-GYGFERLLDEGNNSYAHQRNRRI 190


>gi|145298279|ref|YP_001141120.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851051|gb|ABO89372.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 352

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    +   PE +  L  + + +           + G+TD         +N  LS  RA
Sbjct: 224 LFAFGKAELKPEGMQALDALYQQIVDVQPKDGSALVMGYTDRI---GSDINNLALSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G+  D++  I G         S  D + +          +RR+++ V   
Sbjct: 281 STVANFLIGKGLPADKV-SIQGNGESNPVTGSQCDAIKAKAALIDCLGPDRRVEVRVTGV 339

Query: 342 QG 343
           QG
Sbjct: 340 QG 341


>gi|126661868|ref|ZP_01732867.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38]
 gi|126625247|gb|EAZ95936.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38]
          Length = 274

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           PE+   L  +  ++ ++ E  I I+GH       +    N  LS DRA    + L+ +G+
Sbjct: 178 PESQGTLYDLLFIMQNNPELKIEIQGHICCI---DKDYRN--LSTDRAKQIKRFLVYNGI 232

Query: 305 SEDRISKISGFAHHRL----KIASDPMNSANRRIDILVEDR 341
            + R+ K  GF   +       A+    + NRR++I +  +
Sbjct: 233 QDYRV-KTKGFGVSQPIHPIPEATPEQAAENRRVEIEILSK 272


>gi|319762344|ref|YP_004126281.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans
           BC]
 gi|330825735|ref|YP_004389038.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans
           K601]
 gi|317116905|gb|ADU99393.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans
           BC]
 gi|329311107|gb|AEB85522.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans
           K601]
          Length = 180

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   VL+     L  S+   + + GHTD    R     N  L   RA + 
Sbjct: 79  FDFDSFTVKPEYQSVLEGHSRYLKASSARKVMLEGHTDE---RGGREYNLALGQKRAEAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV + ++  +S +   +      S+   + NRR+++
Sbjct: 136 RRSLALLGVPDAQMEAVS-YGEEKPAAQGHSESAFAQNRRVEL 177


>gi|145297230|ref|YP_001140071.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850002|gb|ABO88323.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 368

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F+ + +   P     L  +  +++A +      ++ GHTD     + A  N  LS  RA
Sbjct: 249 LFEFNKATLKPAASHALDTLFSQIVAANPKDGAATVVGHTD--RIGSDAY-NQALSEQRA 305

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD------PM----NSANRRIDILVE 339
            +    L+  G+  D++ ++ G         ++      P      + +RR++I +E
Sbjct: 306 RTVADYLIAKGLFADKV-RVEGRGKSSPVTGNNCTTGSRPALIACLAPDRRVEIHLE 361


>gi|308271860|emb|CBX28468.1| hypothetical protein N47_G37920 [uncultured Desulfobacterium sp.]
          Length = 191

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S++       +L+K    L   + + ++I GH D    R     N  L   RA SA
Sbjct: 90  FDYDSAVLSQSAQEILKKKAAYLEKYSAILVTIEGHCDD---RGTNEYNLALGEKRAQSA 146

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
              L+  G+S  RI  IS +   +    ++     + NRR
Sbjct: 147 RNFLINLGISSSRIKTIS-YGEEKPLDPANNEVAWAKNRR 185


>gi|37704650|gb|AAR01597.1| OprF [Pseudomonas sp. MFY138]
          Length = 314

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 231 FDFDKSVVKPNSYGDIKNLADFMTQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314


>gi|17986623|ref|NP_539257.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1
           str. 16M]
 gi|23502553|ref|NP_698680.1| Pal family lipoprotein [Brucella suis 1330]
 gi|62290567|ref|YP_222360.1| Pal family lipoprotein [Brucella abortus bv. 1 str. 9-941]
 gi|82700483|ref|YP_415057.1| outer membrane protein MotY [Brucella melitensis biovar Abortus
           2308]
 gi|148560405|ref|YP_001259548.1| outer membrane lipoprotein Omp16 [Brucella ovis ATCC 25840]
 gi|161619624|ref|YP_001593511.1| peptidoglycan-associated lipoprotein [Brucella canis ATCC 23365]
 gi|163845274|ref|YP_001622929.1| peptidoglycan-associated lipoprotein [Brucella suis ATCC 23445]
 gi|189024786|ref|YP_001935554.1| outer membrane protein [Brucella abortus S19]
 gi|225853150|ref|YP_002733383.1| peptidoglycan-associated lipoprotein [Brucella melitensis ATCC
           23457]
 gi|237816073|ref|ZP_04595069.1| peptidoglycan-associated lipoprotein [Brucella abortus str. 2308 A]
 gi|254694357|ref|ZP_05156185.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698015|ref|ZP_05159843.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254703474|ref|ZP_05165302.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686]
 gi|254708437|ref|ZP_05170265.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M163/99/10]
 gi|254708710|ref|ZP_05170521.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94]
 gi|254719698|ref|ZP_05181509.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13]
 gi|254730899|ref|ZP_05189477.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 4 str.
           292]
 gi|256030236|ref|ZP_05443850.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M292/94/1]
 gi|256045306|ref|ZP_05448200.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256061733|ref|ZP_05451870.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33]
 gi|256114264|ref|ZP_05455009.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3
           str. Ether]
 gi|256160411|ref|ZP_05458100.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1]
 gi|256255617|ref|ZP_05461153.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94]
 gi|256263357|ref|ZP_05465889.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 2
           str. 63/9]
 gi|256370104|ref|YP_003107615.1| lipoprotein, Pal family [Brucella microti CCM 4915]
 gi|260167911|ref|ZP_05754722.1| lipoprotein, Pal family [Brucella sp. F5/99]
 gi|260547188|ref|ZP_05822926.1| peptidoglycan-associated lipoprotein [Brucella abortus NCTC 8038]
 gi|260565803|ref|ZP_05836286.1| outer membrane lipoprotein omp16 [Brucella melitensis bv. 1 str.
           16M]
 gi|260568781|ref|ZP_05839249.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 4 str. 40]
 gi|260758616|ref|ZP_05870964.1| outer membrane lipoprotein [Brucella abortus bv. 4 str. 292]
 gi|260762448|ref|ZP_05874785.1| outer membrane lipoprotein [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214665|ref|ZP_05928946.1| outer membrane lipoprotein [Brucella abortus bv. 3 str. Tulya]
 gi|261222819|ref|ZP_05937100.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94]
 gi|261315938|ref|ZP_05955135.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M163/99/10]
 gi|261316200|ref|ZP_05955397.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94]
 gi|261325736|ref|ZP_05964933.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33]
 gi|261754103|ref|ZP_05997812.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686]
 gi|261757348|ref|ZP_06001057.1| peptidoglycan-associated lipoprotein [Brucella sp. F5/99]
 gi|265984712|ref|ZP_06097447.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13]
 gi|265987263|ref|ZP_06099820.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M292/94/1]
 gi|265991730|ref|ZP_06104287.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995567|ref|ZP_06108124.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3
           str. Ether]
 gi|265998778|ref|ZP_06111335.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1]
 gi|306837843|ref|ZP_07470705.1| peptidoglycan-associated lipoprotein [Brucella sp. NF 2653]
 gi|306841414|ref|ZP_07474116.1| peptidoglycan-associated lipoprotein [Brucella sp. BO2]
 gi|61229452|sp|P0A3S7|OMP16_BRUME RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5
           kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor
           outer membrane protein omp16; Flags: Precursor
 gi|61229453|sp|P0A3S8|OMP16_BRUSU RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5
           kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor
           outer membrane protein omp16; Flags: Precursor
 gi|61229455|sp|P0A3S9|OMP16_BRUAB RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5
           kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor
           outer membrane protein omp16; Flags: Precursor
 gi|13898977|gb|AAK48919.1|AF358662_6 Pal protein [Brucella melitensis]
 gi|538293|gb|AAA59360.1| Omp16 [Brucella abortus bv. 1]
 gi|17982237|gb|AAL51521.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1
           str. 16M]
 gi|23348553|gb|AAN30595.1| lipoprotein, Pal family [Brucella suis 1330]
 gi|62196699|gb|AAX74999.1| lipoprotein, Pal family [Brucella abortus bv. 1 str. 9-941]
 gi|82616584|emb|CAJ11663.1| MotY protein:Bacterial outer membrane protein:OmpA/MotB domain
           [Brucella melitensis biovar Abortus 2308]
 gi|148371662|gb|ABQ61641.1| outer membrane lipoprotein Omp16 (Minor outer membraneprotein
           omp16) (16 kDa OMP) (16.5 kDa minor OMP) [Brucella ovis
           ATCC 25840]
 gi|161336435|gb|ABX62740.1| peptidoglycan-associated lipoprotein [Brucella canis ATCC 23365]
 gi|163675997|gb|ABY40107.1| peptidoglycan-associated lipoprotein [Brucella suis ATCC 23445]
 gi|189020358|gb|ACD73080.1| Bacterial outer membrane protein [Brucella abortus S19]
 gi|225641515|gb|ACO01429.1| peptidoglycan-associated lipoprotein [Brucella melitensis ATCC
           23457]
 gi|237788736|gb|EEP62948.1| peptidoglycan-associated lipoprotein [Brucella abortus str. 2308 A]
 gi|256000267|gb|ACU48666.1| lipoprotein, Pal family [Brucella microti CCM 4915]
 gi|260095553|gb|EEW79431.1| peptidoglycan-associated lipoprotein [Brucella abortus NCTC 8038]
 gi|260151176|gb|EEW86271.1| outer membrane lipoprotein omp16 [Brucella melitensis bv. 1 str.
           16M]
 gi|260154165|gb|EEW89247.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 4 str. 40]
 gi|260668934|gb|EEX55874.1| outer membrane lipoprotein [Brucella abortus bv. 4 str. 292]
 gi|260672874|gb|EEX59695.1| outer membrane lipoprotein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260916272|gb|EEX83133.1| outer membrane lipoprotein [Brucella abortus bv. 3 str. Tulya]
 gi|260921403|gb|EEX88056.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94]
 gi|261295423|gb|EEX98919.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94]
 gi|261301716|gb|EEY05213.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33]
 gi|261304964|gb|EEY08461.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M163/99/10]
 gi|261737332|gb|EEY25328.1| peptidoglycan-associated lipoprotein [Brucella sp. F5/99]
 gi|261743856|gb|EEY31782.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686]
 gi|262553467|gb|EEZ09236.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1]
 gi|262766851|gb|EEZ12469.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3
           str. Ether]
 gi|263002686|gb|EEZ15089.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093357|gb|EEZ17426.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 2
           str. 63/9]
 gi|264659460|gb|EEZ29721.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis
           M292/94/1]
 gi|264663304|gb|EEZ33565.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13]
 gi|306288520|gb|EFM59872.1| peptidoglycan-associated lipoprotein [Brucella sp. BO2]
 gi|306407082|gb|EFM63299.1| peptidoglycan-associated lipoprotein [Brucella sp. NF 2653]
 gi|326409709|gb|ADZ66774.1| Bacterial outer membrane protein [Brucella melitensis M28]
 gi|326539416|gb|ADZ87631.1| peptidoglycan-associated lipoprotein [Brucella melitensis M5-90]
          Length = 168

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L K  + L       I+I GH D    R     N  L   R
Sbjct: 59  DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV  +R+  IS + + R     D     S NRR  + V +  G
Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167


>gi|315637993|ref|ZP_07893178.1| chemotaxis protein MotB [Campylobacter upsaliensis JV21]
 gi|315481841|gb|EFU72460.1| chemotaxis protein MotB [Campylobacter upsaliensis JV21]
          Length = 314

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 57/325 (17%)

Query: 30  LGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85
              W I YAD M  L+  F+++     +         K I++  N    NL  + + + D
Sbjct: 9   GNFW-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLKIIKENLNTQEANLELSKQALKD 67

Query: 86  EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145
           +++         I   + + +   +  L +  T                    Q    +N
Sbjct: 68  KES---------IVFQLSKELNATANTLNLIHT--------------------QKTELEN 98

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +++  S+  K+     D +  I   +        K      K  K   +    I   LS 
Sbjct: 99  NISTLSKDLKNNIDEKDRQILILLNQIELKENELKAIQQDFKEAKERVENLSLIRENLSK 158

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-------- 257
            +   + + +  +       IS+       +FDK S I   E  + L+KI          
Sbjct: 159 ALQKKLDENISIDQKTGA--ISL---PAEVLFDKDSFILKDEAKISLKKILSGYLTGILD 213

Query: 258 ---VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKI 312
              +  +    I I GHTD+         N  LS  RAY     +      E   ++   
Sbjct: 214 DENISKNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMSFIYSFYKDERLQKLLMA 269

Query: 313 SGFAHHRLKIASDPMN-SANRRIDI 336
           SG +     + +   +   +RRI+I
Sbjct: 270 SGRSFSVPILKNGVEDKDLSRRIEI 294


>gi|167911995|ref|ZP_02499086.1| OmpA family protein [Burkholderia pseudomallei 112]
 gi|254203932|ref|ZP_04910292.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254295613|ref|ZP_04963071.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|147745444|gb|EDK52524.1| OmpA family protein [Burkholderia mallei FMH]
 gi|157805511|gb|EDO82681.1| ompA family protein [Burkholderia pseudomallei 406e]
          Length = 200

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 77  LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 133

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 134 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 190


>gi|145588679|ref|YP_001155276.1| OmpA/MotB domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047085|gb|ABP33712.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 187

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           ++D + S   PE    L KI   L+     + I  G+TD+         N  L   RA S
Sbjct: 81  LYDFNKSDLKPEGKATLDKIAADLSKIKLEVIIAVGNTDSV---GTDAYNMALGQRRAQS 137

Query: 295 AYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338
               L+  GV   RI  +  G ++     A+    + NRR DI V
Sbjct: 138 VKTYLVSKGVDASRIYTESKGKSNPVASNATAEGRAKNRRTDIEV 182


>gi|148553776|ref|YP_001261358.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148498966|gb|ABQ67220.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 373

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    E   +L       A + +  + + GH D        + N  LS  RA +
Sbjct: 268 FFDWDKSDITAEAASILDNAANAYATTGQARVQLAGHADK---SGSDQYNVGLSQRRADA 324

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L   GV +  I+    F   R  + +        NRR++I
Sbjct: 325 VKAYLAGKGVPDSAIT-TEAFGESRPLVDTADGVREPQNRRVEI 367


>gi|71065468|ref|YP_264195.1| OmpA/MotB family outer membrane protein [Psychrobacter arcticus
           273-4]
 gi|71038453|gb|AAZ18761.1| outer membrane protein, OmpA/MotB family [Psychrobacter arcticus
           273-4]
          Length = 172

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    ++  VL +  ++L  +    + I GHTD    R     N  L   RA +A
Sbjct: 72  FAFDSSEITSQSAGVLNQHADLLKSNPSAGVVIAGHTDE---RGSREYNIALGERRAQAA 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
              L   GV+ + I ++  +   R   A  ++   + NRR ++
Sbjct: 129 RDYLAAQGVAANNI-RVISYGEERPAAAGTNEDAYAQNRRAEL 170


>gi|254524741|ref|ZP_05136796.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Stenotrophomonas
           sp. SKA14]
 gi|219722332|gb|EED40857.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Stenotrophomonas
           sp. SKA14]
          Length = 280

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F   S+    E    +Q I  +V   +    I + G+TD     + +  N  LS  RA 
Sbjct: 167 LFGFDSAKLSAEGQQAVQGILAQVREAAQVQSIRVTGYTD--RIGSASY-NQALSQRRAD 223

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           +    L++ GV    IS   G       +  +  N          NRR+ I
Sbjct: 224 AVRTALVQGGVPAGSISA-EGRGAAEPIVQCEQHNRRELIACLAPNRRVQI 273


>gi|37704600|gb|AAR01572.1| OprF [Pseudomonas sp. MFY30]
 gi|37704670|gb|AAR01607.1| OprF [Pseudomonas sp. MFY234]
          Length = 314

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 231 FDFDKSVVKPNSYGDIKNLADFMTQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314


>gi|323455133|gb|EGB11002.1| hypothetical protein AURANDRAFT_71054 [Aureococcus anophagefferens]
          Length = 1595

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 31/125 (24%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS-------------------- 275
           F  S +IPLP++  +L +I +VL     + +   GH ++                     
Sbjct: 586 FVGSRAIPLPKSQPLLAQILKVLQAHPGIAVRFEGHVNSKCGLDCDGSGGCPNGSSMCVK 645

Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSAN 331
            P   +      LS  RA +  Q ++  G+  DR+    GFA  R     +  + +   N
Sbjct: 646 CPGGAMG-----LSTARADAVKQFILACGIEPDRVYA-QGFAGTRRLTGDVIDETVGHVN 699

Query: 332 RRIDI 336
           RR+++
Sbjct: 700 RRVEV 704


>gi|325915597|ref|ZP_08177905.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538157|gb|EGD09845.1| outer membrane protein/peptidoglycan-associated (lipo)protein
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 439

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278
           T  G LI++ D     +FD   S   P+ + VL  +   L   T + + +RGHTDA   +
Sbjct: 319 TPCGYLITLND---RILFDFDKSDIRPDAVRVLDTLAAALGKVTTQQMEVRGHTDA---K 372

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331
                N  LS  RA++    L   G ++   +   G+   +    +      +P     N
Sbjct: 373 GDDAYNQALSERRAHAVLAALRTRGAAQG--AGAKGYGESQPVAPNTVNGQDNPGGRQLN 430

Query: 332 RRIDILVED 340
           RR++I +  
Sbjct: 431 RRVEIFLRT 439


>gi|167824061|ref|ZP_02455532.1| hypothetical protein Bpseu9_10300 [Burkholderia pseudomallei 9]
          Length = 290

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++ +     + + G+TD          N RLS +RA + 
Sbjct: 183 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 237

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 238 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290


>gi|156976121|ref|YP_001447027.1| hypothetical protein VIBHAR_04892 [Vibrio harveyi ATCC BAA-1116]
 gi|156527715|gb|ABU72800.1| hypothetical protein VIBHAR_04892 [Vibrio harveyi ATCC BAA-1116]
          Length = 321

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +        E++    +  + I G++D +        N +L+  RA + 
Sbjct: 211 FGLESAELQDSS--AFNGTVELMNTYPQAQVEINGYSDTT---GSEAYNQQLTEKRAQAV 265

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            +     G++ DR++ + G        +++       NRR++++V
Sbjct: 266 AEHFQAEGIAADRMT-VKGMGEANPVASNETREGREENRRVEVVV 309


>gi|146275632|ref|YP_001165792.1| OmpA/MotB domain-containing protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322323|gb|ABP64266.1| OmpA/MotB domain protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 291

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+    L             +  + G+TD+         N  LS  RA S 
Sbjct: 180 FDTGKYNLSPQAKAELCNAATTAEGIDNALMLVVGYTDSV---GDDEYNQTLSEKRANSV 236

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
              L ++      R+   +G A      ++D     + NRR+ + V   +G
Sbjct: 237 INYLQQACRWKPYRMLTPTGMAKADPLASNDTEEGKAQNRRVAVNVLVSKG 287


>gi|260778838|ref|ZP_05887730.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605002|gb|EEX31297.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288
           +++   +F   S    P     +  + + +    +  I I+G+  AS   N   +   LS
Sbjct: 79  ERQLRILFANDSYDVSPVFSDQISAMADFMDRYRSASIEIQGY--ASKTGNSDYNV-ELS 135

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
             RA +  ++L+  G++ +R++ I GF    L+     +  ++ NRR+ 
Sbjct: 136 KKRAVAVEELLLSYGINPERVT-IVGFGATHLESTGEEETDHALNRRVT 183


>gi|300776234|ref|ZP_07086093.1| outer membrane protein [Chryseobacterium gleum ATCC 35910]
 gi|300505367|gb|EFK36506.1| outer membrane protein [Chryseobacterium gleum ATCC 35910]
          Length = 136

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD +S   LP    +L      +  S+   ++ G TD    R     N +LS  RA +  
Sbjct: 30  FDLNSDRILPSNTPILNNAVNYINSSSGSYNVIGATDT---RGTDAYNQKLSERRANNVK 86

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
             L+K+GV   ++  I G     LK    +P        N ANRR+
Sbjct: 87  NYLIKNGVQTGKLQAI-GKGEKDLKYPECEPATKCPEWKNRANRRV 131


>gi|149915595|ref|ZP_01904121.1| OmpA family domain protein [Roseobacter sp. AzwK-3b]
 gi|149810487|gb|EDM70330.1| OmpA family domain protein [Roseobacter sp. AzwK-3b]
          Length = 340

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI-SKISGFAHHRLKI 322
            +++ GHTD+         N  LS  RA +    L+   GV  +++ ++  G+       
Sbjct: 264 RVALVGHTDSV---GALEPNIDLSRARATAVMTRLIDKYGVRPEQLEARGVGYLAPIASN 320

Query: 323 ASDPMNSANRRIDILVEDRQ 342
            +D    ANRR++ ++ + +
Sbjct: 321 RTDTGRDANRRVEAVLLNTE 340


>gi|163803132|ref|ZP_02197015.1| putative outer membrane protein OmpA [Vibrio sp. AND4]
 gi|159173032|gb|EDP57865.1| putative outer membrane protein OmpA [Vibrio sp. AND4]
          Length = 320

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 212 VKGVLFETTRTGILISIIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
            + V+ E   T    +I+DQ       T  F   S+     +        E++    +  
Sbjct: 180 SEPVVQEVVETRPATNIVDQEYPAQTTTVQFGLESAKLQDAS--AFNGTVELMNTYPQAQ 237

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I G++D +     A  N +L+  RA +  +     G++ DR++ + G        +++
Sbjct: 238 VEINGYSDTT---GAAAYNQQLTEKRAQAVAEHFQAEGIAADRMT-VKGMGEANPVASNE 293

Query: 326 P--MNSANRRIDILV 338
                  NRR++++V
Sbjct: 294 TRKGREQNRRVEVVV 308


>gi|153831721|ref|ZP_01984388.1| outer membrane protein OmpA [Vibrio harveyi HY01]
 gi|148872231|gb|EDL71048.1| outer membrane protein OmpA [Vibrio harveyi HY01]
          Length = 321

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+     +        E++    +  + I G++D +        N +L+  RA + 
Sbjct: 211 FGLESAELQDAS--AFNGTVELMNTYPQAQVEINGYSDTT---GSEAYNQQLTEKRAQAV 265

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            +     G++ DR++ + G        +++       NRR++++V
Sbjct: 266 AEHFQAEGIAADRMT-VKGMGEANPVASNETREGREENRRVEVVV 309


>gi|291334148|gb|ADD93818.1| outer membrane protein [uncultured marine bacterium
           MedDCM-OCT-S05-C362]
          Length = 269

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHST 263
            +  D I + V    T         +++    +D  SS   PE    L  ++G +  H  
Sbjct: 137 EMAMDRIQEKVGLTITDEA----EAERKIVIYYDHDSSDISPEDQAYLSAEVGRIPMHDK 192

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             +++ GH D +      R N  LS++RA   ++ L + G+  DR   +S        I 
Sbjct: 193 VSLTVVGHADRT---GTERYNHDLSVERAIGVHRALSQYGI-GDRSIGVSAKGETVPAIP 248

Query: 324 SDPM--NSANRRIDILVE 339
           +        NRR ++L++
Sbjct: 249 TSDGQSEPRNRRSEVLIK 266


>gi|206577508|ref|YP_002239403.1| outer membrane protein A [Klebsiella pneumoniae 342]
 gi|288936252|ref|YP_003440311.1| OmpA domain protein transmembrane region-containing protein
           [Klebsiella variicola At-22]
 gi|290510692|ref|ZP_06550062.1| OOP family OmpA-OmpF porin [Klebsiella sp. 1_1_55]
 gi|206566566|gb|ACI08342.1| outer membrane protein A [Klebsiella pneumoniae 342]
 gi|288890961|gb|ADC59279.1| OmpA domain protein transmembrane region-containing protein
           [Klebsiella variicola At-22]
 gi|289777408|gb|EFD85406.1| OOP family OmpA-OmpF porin [Klebsiella sp. 1_1_55]
          Length = 350

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G TD     + A  N +LS
Sbjct: 222 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVMGFTD--RIGSEAY-NQQLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 279 EKRAQSVVDYLVAKGIPAGKISA-RGMGKSNPVTGNTCDNVKARAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|162456085|ref|YP_001618452.1| OmpA domain-containing protein [Sorangium cellulosum 'So ce 56']
 gi|161166667|emb|CAN97972.1| OmpA domain protein [Sorangium cellulosum 'So ce 56']
          Length = 210

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 13/130 (10%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTD 273
               T   I+I          F+   +    E+  +L ++   +   T    I+I GH  
Sbjct: 79  RVVVTDDKIII-----NEKIQFEYDQATIRTESHSLLDEVVGTIKKHTHIKKIAIEGHAS 133

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331
           A         N +LS  RA +  + L+  G++   +    GF   +    +D       N
Sbjct: 134 AE---GSEDHNLKLSDRRAKAVMKYLVDHGIAAG-MLTAKGFGKSKPIADNDTPEGREKN 189

Query: 332 RRIDILVEDR 341
           RR++  + ++
Sbjct: 190 RRVEFNIVEQ 199


>gi|330975634|gb|EGH75700.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 250

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
             +     E  R G  I +I       F   SS         L  +   L   +   I I
Sbjct: 95  ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++
Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASN 205


>gi|308448669|ref|XP_003087717.1| hypothetical protein CRE_26028 [Caenorhabditis remanei]
 gi|308253504|gb|EFO97456.1| hypothetical protein CRE_26028 [Caenorhabditis remanei]
          Length = 189

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    +    LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 81  FDYDSSDLSNDDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV  +++  +S +             +   NRR++I
Sbjct: 138 ESYLITNGVKANQLEAVS-YGKEMPINTGHDEAAWKENRRVEI 179


>gi|153836574|ref|ZP_01989241.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149750172|gb|EDM60917.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 284

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198
            K  L    ++G   C    + +++ K+            + A      +++RL  L ++
Sbjct: 53  TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112

Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +   L+          D +   +        +L   +D +    F   S+   P+ +  L
Sbjct: 113 LDYVLTQTACTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 166

Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
            +   +L       + + GH D          N +L+ +RA    + L   GV+ DR+ +
Sbjct: 167 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 222

Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340
                                NRR+ I V  
Sbjct: 223 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 253


>gi|294672796|ref|YP_003573412.1| OmpA family protein [Prevotella ruminicola 23]
 gi|294473078|gb|ADE82467.1| OmpA family protein [Prevotella ruminicola 23]
          Length = 384

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F    ++        + ++ E L  + E  ++I G+ DA    +   D  RL+  RA  
Sbjct: 286 FFAIGKTVIRKSEQQKVNEVVEYLNANPEAKVNITGYADAGTGNDRIND--RLAAGRADV 343

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             + L K+GV+  RIS  S  A  +    +D       R+ I++
Sbjct: 344 VVKALKKAGVAASRISYDSKGARVQPFADNDS-----NRVSIVI 382


>gi|262375579|ref|ZP_06068812.1| peptidoglycan-associated lipoprotein [Acinetobacter lwoffii SH145]
 gi|262309833|gb|EEY90963.1| peptidoglycan-associated lipoprotein [Acinetobacter lwoffii SH145]
          Length = 190

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    E +  LQ   + L  +    +++ GHTD    R     N  L   RA + 
Sbjct: 82  FDYDSTELSNEDLNTLQAHAQFLMANANSRVALTGHTDE---RGTREYNMALGERRAKAV 138

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
              L+ +GV+  ++  +S +       A    N+   NRR++I
Sbjct: 139 ESFLVTTGVNPGQLEAVS-YGKEMPINAGHDENAWKENRRVEI 180


>gi|262166026|ref|ZP_06033763.1| outer membrane protein [Vibrio mimicus VM223]
 gi|262025742|gb|EEY44410.1| outer membrane protein [Vibrio mimicus VM223]
          Length = 278

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             LEK            L       + ++KRL  L +++    S            F  +
Sbjct: 83  QALEKQNRIARQLDGGLLLDAANDLLIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142

Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274
                +S+I++ N  +     F  +S+   P+ +  L    + L       +S+ GH D+
Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKDRQDLTLSVTGHADS 197

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                 +  N +L++ RA    + L   G++ +RI+  S           +       NR
Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253

Query: 333 RIDILV-------EDRQG 343
           R+ I +         +QG
Sbjct: 254 RVSIEIITADSPTLSKQG 271


>gi|227538215|ref|ZP_03968264.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241924|gb|EEI91939.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 650

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
             + GI+  +    +   +D + S   P+   VL ++   +  +    I +  HTD+   
Sbjct: 528 VNKEGIVFVL----DNIYYDFNKSDIRPDAAKVLDQLVNTMTENPTLQIELSSHTDS--- 580

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA 330
           R     N +LS  RA SA + ++  G++++R+    G+   +L          ++  + A
Sbjct: 581 RGSDSYNMKLSDRRAKSAVEYIISKGIAKERLVS-KGYGESKLVNECANGVKCTEEQHQA 639

Query: 331 NRRIDILVE 339
           NRR ++ V 
Sbjct: 640 NRRTEVKVL 648


>gi|91792756|ref|YP_562407.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91714758|gb|ABE54684.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 289

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++  +     +   L+K+ E L++  EV  + I G TD+   ++I   N  +S +RA S
Sbjct: 184 YEEGDTELTHFSKYQLKKVQEYLSYDPEVELVLIDGFTDSYGPKSI---NQTVSNNRADS 240

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
             Q+L+ SG+ +D+I   +G    R   +++       NRR+ I
Sbjct: 241 IKQLLIASGIPKDKIIS-NGHGEKRHVASNELVQERERNRRVVI 283


>gi|283798975|ref|ZP_06348128.1| outer membrane protein [Clostridium sp. M62/1]
 gi|291073265|gb|EFE10629.1| outer membrane protein [Clostridium sp. M62/1]
          Length = 294

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   P+ + +L +  E+L  +    + + GHTD          N +LS  RA + 
Sbjct: 225 FDFDKATLRPDAVAILNEAAEILKRNPSLRVEVAGHTD---LCGKDAYNQKLSERRAKAV 281

Query: 296 YQVLMKSGVSEDR 308
           Y  L  +GV   R
Sbjct: 282 YDFLTSNGVDAGR 294


>gi|149908775|ref|ZP_01897435.1| hypothetical protein PE36_21279 [Moritella sp. PE36]
 gi|149808049|gb|EDM67990.1| hypothetical protein PE36_21279 [Moritella sp. PE36]
          Length = 284

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 232 RNTPMFDKSSSIP-----LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           R+  ++    S         E   +++ I   L      + I GH+++        +N  
Sbjct: 171 RDRNLYYSGGSYLLNTQQKQEMAAIVKYIS--LDGLVTKVLIDGHSNSI---GNTVNNLL 225

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           LS  RA   Y  LM++G+S  ++ ++          +    +    NRR+++ +  R G
Sbjct: 226 LSQQRADDVYMYLMEAGIS-TKLMEVRSHGDRYPLKSDRTASGREKNRRVNLRIIRRLG 283


>gi|146343730|ref|YP_001208778.1| hypothetical protein BRADO6977 [Bradyrhizobium sp. ORS278]
 gi|146196536|emb|CAL80563.1| conserved hypothetical protein; putative OmpA-like transmembrane
           domains [Bradyrhizobium sp. ORS278]
          Length = 213

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 18/199 (9%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +     D  + + +      +K + +  +      +       ++ K LQ +  + + +
Sbjct: 19  TQAVAAEDVTEDQIVRALAGPKKPLTRGLSMAPQAEAAPAAANPEQDKFLQSIRGRATRS 78

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           LS    + I        T+  I + I        FD +S+    +++  +Q +G  L   
Sbjct: 79  LSSAEREEIA---AVAKTKPNIDLEIT-------FDYNSANISQKSMASVQALGRALTSP 128

Query: 263 TEV---ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
                   + GHTDA         N  LS  RA S  + L++  G++   +  + G+   
Sbjct: 129 DLKGSTFVLAGHTDA---AGADAYNQDLSERRADSIKRYLVEKFGIAGSDLVTV-GYGKS 184

Query: 319 RLKIASDPMNSANRRIDIL 337
           +LK  S P+   NRR+ ++
Sbjct: 185 KLKDPSQPLAEVNRRVQVV 203


>gi|82523863|emb|CAI78811.1| outer membrane protein and related peptidoglycan-associated
           [uncultured candidate division WS3 bacterium]
          Length = 192

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        +   +L +  + +       I I GH D+   R     N  L   RA +A
Sbjct: 91  FEFDKYTLTADARRMLAQTAKAMKEMPEVRIQIEGHCDS---RGTQEYNLALGQRRAQAA 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
              L+  G+   R+S IS F   R      ++   + NRR
Sbjct: 148 KDYLVNLGIDAARVSIIS-FGEERPLDPRENEEAWAKNRR 186


>gi|167570798|ref|ZP_02363672.1| ompA family protein [Burkholderia oklahomensis C6786]
          Length = 224

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214


>gi|300787647|ref|YP_003767938.1| OmpA-OmpF porin, OOP family [Amycolatopsis mediterranei U32]
 gi|299797161|gb|ADJ47536.1| OmpA-OmpF porin, OOP family [Amycolatopsis mediterranei U32]
          Length = 410

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 82/267 (30%), Gaps = 20/267 (7%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
            +  K+   I       SV       +               +    ++           
Sbjct: 147 DALQKVSRQIGTEHGPVSVVAVSNGLDNTAPLDLRVPLAGDATPESVAKMLAGDAEIPGL 206

Query: 153 KGKD-----LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGL 206
           +G D     L +++   + + + E  ++  +  E + A    K RL+  +  I       
Sbjct: 207 QGVDVQILELGQTSQGRRQMTEGEQRWIVSVWGEILKAAGVAKPRLERKSGDILDGAPAN 266

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           V  + V        +  +    +      +FD +S +  P    VL+    +L       
Sbjct: 267 VPADAVFAAAPPQPKPPVGTGSVSLSAQALFDPNSPVLAPAAEAVLRPYVTILQGPGAHA 326

Query: 267 SIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324
           +I GHT    P          LS+ RA +     ++  V  + ++   G       +   
Sbjct: 327 TITGHTATWGPIPGRDL----LSVQRAEAVRNYFIEQHVPAEALAPARGVGSSEQVVNDI 382

Query: 325 DP-------MNSANRRIDI-LVEDRQG 343
           DP           NRRI + +V   +G
Sbjct: 383 DPAGNLIEQAAQRNRRIVLDIVTPTKG 409


>gi|294139328|ref|YP_003555306.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293325797|dbj|BAJ00528.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 277

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S   L E   V++ +   L    +    + GHTD          N  LS  RA +
Sbjct: 170 LFKFDSDEMLLEATPVVEVVATYLKSHPKQSFYVIGHTDDL---GKQSYNQVLSNKRAKA 226

Query: 295 AY-QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              Q+L    V + ++    G   +      ++D     NRR+++++  
Sbjct: 227 VVKQLLSVYKVPKSQLEA-KGIGEYSPVANNSNDAGQKLNRRVELVLRS 274


>gi|196233271|ref|ZP_03132117.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
 gi|196222742|gb|EDY17266.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428]
          Length = 564

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S          + ++ + L  ++  I I G TD    R     N  L   RA +  
Sbjct: 463 FGFDSYAIGGGERSKIDEVAQFLKSASNTIIIAGFTDE---RGTPEYNRGLGERRAQAVR 519

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRID 335
           + L++ G    +I  +S  A       S+    + NRR +
Sbjct: 520 EALIRDGADGSKIQTVSFGAEMPADQGSNESAWAKNRRAE 559


>gi|50085748|ref|YP_047258.1| putative outer membrane lipoprotein [Acinetobacter sp. ADP1]
 gi|49531724|emb|CAG69436.1| putative outer membrane lipoprotein [Acinetobacter sp. ADP1]
          Length = 254

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+I       +L ++   L     + + I GHTD+      A  N  LS +RA + 
Sbjct: 153 FESGSAILTASGQQILDEMAAALKKVGGKKVKIIGHTDS---SGDASKNLVLSQERAVAV 209

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L+   +S D +    G   ++    +        NRRI+  V 
Sbjct: 210 KNYLITKNISSDNL-STEGVGSNKPVADNTTAEGRRKNRRIEFEVL 254


>gi|320179525|gb|EFW54477.1| Outer membrane protein A precursor [Shigella boydii ATCC 9905]
          Length = 342

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 214 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 270

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 271 ERRAQSVVDYLISKGIPADKISA-RGIGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 329

Query: 338 VE 339
           V+
Sbjct: 330 VK 331


>gi|330830247|ref|YP_004393199.1| sodium-type flagellar protein MotY [Aeromonas veronii B565]
 gi|328805383|gb|AEB50582.1| Sodium-type flagellar protein MotY [Aeromonas veronii B565]
          Length = 277

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +DK+S      +   L  I E +       V+ I  ++D+         N +LS  RA +
Sbjct: 170 YDKNSDQLSIPSKRRLAMISEFIKADKGIDVVVIDAYSDSY---GGRWPNLKLSEKRADA 226

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             +V +  G+   +I  + G    +   +++     + NRR+ I
Sbjct: 227 IKKVFVDLGIDPGKI-SVEGHGEKQHVASNETEQGRAKNRRVVI 269


>gi|167841641|ref|ZP_02468325.1| ompA family protein [Burkholderia thailandensis MSMB43]
          Length = 224

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAILKPAGKQKLDELASKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214


>gi|332668116|ref|YP_004450904.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336930|gb|AEE54031.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 662

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D        +    L K+ E L  +    I +  HTD    R     N  LS  RA SA
Sbjct: 556 YDLDKWDIRADAQPTLDKLAETLKLNPKVRIQLSSHTDC---RGTDVYNESLSQKRAQSA 612

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRR 333
              L+  G+   R+    G+     +        S+  +  NRR
Sbjct: 613 VDYLISKGIEAQRLEA-RGYGEGVPEATCACARCSEDEHQLNRR 655


>gi|332092496|gb|EGI97569.1| outer membrane protein A [Shigella boydii 5216-82]
 gi|332095872|gb|EGJ00879.1| outer membrane protein A [Shigella dysenteriae 155-74]
          Length = 351

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+  D+IS   G         +   N              RR++I 
Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGIGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|315634557|ref|ZP_07889842.1| outer membrane protein P5 [Aggregatibacter segnis ATCC 33393]
 gi|315476784|gb|EFU67531.1| outer membrane protein P5 [Aggregatibacter segnis ATCC 33393]
          Length = 354

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+   VL  I   +A   +  + + G+TD     + A  N +LS  RA + 
Sbjct: 241 FAFGKADLKPQAQGVLDGIYGEIAQVKSANVKVAGYTD--RIGSDAY-NQKLSQKRAETV 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GVS++ IS  +G+        +  D +            +RR++I V
Sbjct: 298 ANYLVAKGVSQNAISA-TGYGKANPVTGNKCDAVKGRKALIACLADDRRVEIAV 350


>gi|291616946|ref|YP_003519688.1| OmpA [Pantoea ananatis LMG 20103]
 gi|291151976|gb|ADD76560.1| OmpA [Pantoea ananatis LMG 20103]
          Length = 367

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 239 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 295

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------------DPMNSANRRIDI 336
             RA S    L+  G+  ++IS   G         +            D +    RR++I
Sbjct: 296 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRKALIDCLAPD-RRVEI 353


>gi|212637766|ref|YP_002314291.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212559250|gb|ACJ31704.1| OmpA [Shewanella piezotolerans WP3]
          Length = 301

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD SSS         L  +   +   +    + I GH DAS  R     N  LS +RA 
Sbjct: 182 LFDTSSSHLNTVHSKDLVAVSRYIEADSTIAEVLIDGHADASGNRIA---NLVLSKERAD 238

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
               +L++ GV   R+ ++          A++       NRR+ I
Sbjct: 239 EVASMLIELGVPA-RMIQVRHHGTRAPIAANNNQQGRELNRRVSI 282


>gi|327393374|dbj|BAK10796.1| outer membrane protein A precursor OmpA [Pantoea ananatis AJ13355]
          Length = 363

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G TD     +    N +LS
Sbjct: 235 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 291

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------------DPMNSANRRIDI 336
             RA S    L+  G+  ++IS   G         +            D +    RR++I
Sbjct: 292 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRKALIDCLAPD-RRVEI 349


>gi|294013407|ref|YP_003546867.1| peptidoglycan-associated lipoprotein [Sphingobium japonicum UT26S]
 gi|292676737|dbj|BAI98255.1| peptidoglycan-associated lipoprotein [Sphingobium japonicum UT26S]
          Length = 170

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             +  +FD        +   +LQ     L  +    ++I GH D    R     N  L  
Sbjct: 61  SSDRILFDTDQYDVDAQDQQILQSQAAWLQQNPNVRVTIEGHADE---RGTRDYNIALGE 117

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339
            RA +A   L   G+   RI+ +S        + SD    + NRR + + V+
Sbjct: 118 RRANAAKNYLASLGIDAGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTVQ 169


>gi|90414986|ref|ZP_01222948.1| hypothetical protein P3TCK_23895 [Photobacterium profundum 3TCK]
 gi|90323925|gb|EAS40525.1| hypothetical protein P3TCK_23895 [Photobacterium profundum 3TCK]
          Length = 260

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +  LP+    L+    +L   +   + + GHTD+      +  N +L + RA + 
Sbjct: 135 FALNRAELLPDYQQALRYAATILKRQSHWHLQLTGHTDSL---GTSDSNIQLGMKRASAV 191

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
            + L++ GV  ++I  +           +       ANR+++
Sbjct: 192 KRFLIEQGVKSNQI-AVFSAGESMAMDDTHSRTQRLANRKVE 232


>gi|53719284|ref|YP_108270.1| hypothetical protein BPSL1659 [Burkholderia pseudomallei K96243]
 gi|52209698|emb|CAH35657.1| putative exported protein [Burkholderia pseudomallei K96243]
          Length = 299

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++ +     + + G+TD          N RLS +RA + 
Sbjct: 192 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 246

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 247 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 299


>gi|332877818|ref|ZP_08445556.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684113|gb|EGJ56972.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 680

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +   S+     + + L  +  ++  +  + I +  H D   +R     N RLS  R
Sbjct: 519 DNVFYAFDSAELTDSSTLALDSLVTLMEDNPNITIELSSHCD---YRGRDEYNIRLSQRR 575

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           A S  + L+  GV+ DR++ I G+   R K+
Sbjct: 576 AESVVKYLIAHGVATDRLTPI-GYGETRPKV 605


>gi|330998288|ref|ZP_08322113.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568677|gb|EGG50478.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 673

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +   S+     + + L  +  ++  +  + I +  H D   +R     N RLS  R
Sbjct: 519 DNVFYAFDSAELTDSSTLALDSLVTLMEDNPNITIELSSHCD---YRGRDEYNIRLSQRR 575

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           A S  + L+  GV+ DR++ I G+   R K+
Sbjct: 576 AESVVKYLIAHGVATDRLTPI-GYGETRPKV 605


>gi|260769131|ref|ZP_05878064.1| outer membrane protein [Vibrio furnissii CIP 102972]
 gi|260614469|gb|EEX39655.1| outer membrane protein [Vibrio furnissii CIP 102972]
          Length = 208

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS   P  +  ++++ + L    E  I ++G+         A  N  LS  R+ +
Sbjct: 88  LFANNSSTIPPVFMNQIRQMADFLKLYPEASIELQGYASKV---GKADHNLALSKQRSEA 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
               L++ GV+  RI +I G+    L +  +    ++ NRR+   V   +G
Sbjct: 145 VRLQLLRFGVTPKRI-RIVGYGDTVLAVNGEDQVSHAQNRRVTASVVGFKG 194


>gi|153835168|ref|ZP_01987835.1| outer membrane protein [Vibrio harveyi HY01]
 gi|148868362|gb|EDL67484.1| outer membrane protein [Vibrio harveyi HY01]
          Length = 330

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    E+   L +I ++L       + I G TD    R  ++ N +L+  RA S 
Sbjct: 222 FGFDSTKVSQESEQKLLEIQKLLVSYPQSQVEIVGFTDD---RGASQYNEKLAKRRAQSI 278

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            + L   GV  D+IS  S G         S+     NRR+++ +
Sbjct: 279 AKYLESKGVKADQISLTSKGELDPVASNHSEDGRVKNRRVEVSI 322


>gi|320329251|gb|EFW85248.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330880852|gb|EGH15001.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 240

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 9/207 (4%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
                   + + + S D +    +        ++ I    +  ++E   + L   ++   
Sbjct: 22  GAGHQDSGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAH 81

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKG 214
               S+   +   +  N  L      K+   +++ +L    AK  S+   G   ++ +  
Sbjct: 82  YAYLSSRYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILS 141

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTD 273
           +    T  G+++++ D     +FD   +         + K+ + L  +   +  I G+TD
Sbjct: 142 LATTETDRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTD 197

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++      ++N +LS DRA +   VLM
Sbjct: 198 ST---GDRQENLKLSKDRAQAVADVLM 221


>gi|327485675|gb|AEA80081.1| Protein F-like protein [Vibrio cholerae LMA3894-4]
          Length = 182

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     +   L  +   LA  +   I + GHTD +      + N +L+  RA + 
Sbjct: 77  FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L++S V ++ I    GF  +     +   N    NRR++I
Sbjct: 134 KAALVQSRVVQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 175


>gi|317480796|ref|ZP_07939881.1| OmpA family protein [Bacteroides sp. 4_1_36]
 gi|316903039|gb|EFV24908.1| OmpA family protein [Bacteroides sp. 4_1_36]
          Length = 416

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      F+    +    +  +L ++  +L +  +    I G+TDA   R  A+ N RLS
Sbjct: 294 DLLENIHFEFDKDVITLVSHKILDRLAALLKNYPDSHFLITGYTDA---RGSAQYNLRLS 350

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
             RA + Y+ L++ GV    + K  GF +    +   P+ + N R
Sbjct: 351 ERRAKAVYKALLERGV-PSHMLKWRGFGNRAALVP--PVAADNIR 392


>gi|315127225|ref|YP_004069228.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas
           sp. SM9913]
 gi|315015739|gb|ADT69077.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas
           sp. SM9913]
          Length = 292

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286
           D   T M ++ +SS     +   L KI E L +    E ISI  +TD+        +N  
Sbjct: 180 DISFTIMNYESNSSKLTKSSQQRLDKIAEYLKNDPSIESISIASYTDSY---GGRWNNLD 236

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           LS  RA      ++  GV E ++    GF   R    +D       NRR+ I +
Sbjct: 237 LSRKRAKEIKDYMVGLGVDEAKVV-TEGFGEKRFVDTNDNILGRDKNRRLVIQI 289


>gi|298370128|ref|ZP_06981444.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281588|gb|EFI23077.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 298

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKS 240
           + ++ ++ +      K+ + TLS +V+ +    VL +       +   D+     M ++ 
Sbjct: 134 QSVSPEQAEAEMKGVKRQNHTLSRVVSKDKCAQVLKKYNLQASALFKFDRSGYQDMLEQG 193

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
                  +  + Q    V +     +++ GHTD  P      ++  LS+ RA +  Q L 
Sbjct: 194 KREVSTISQDIKQNPAAVTS-----VNVVGHTD--PEGKPEYND-ALSVKRAQTVKQALS 245

Query: 301 KSGVSEDRISKISGFAHHRLKIASD----PMNSA--------NRRIDILV 338
            SG+  + I    G     L + +     P N+         NRR++I++
Sbjct: 246 SSGLDGN-IISTQGKGERELVVTNCRKRFPKNAKAREKCDQPNRRVEIIL 294


>gi|156975261|ref|YP_001446168.1| hypothetical protein VIBHAR_02990 [Vibrio harveyi ATCC BAA-1116]
 gi|156526855|gb|ABU71941.1| hypothetical protein VIBHAR_02990 [Vibrio harveyi ATCC BAA-1116]
          Length = 293

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 187 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSTSQS---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+S +RI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRSYFESLGLSGERI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292


>gi|299134179|ref|ZP_07027372.1| peptidoglycan-associated lipoprotein [Afipia sp. 1NLS2]
 gi|298590926|gb|EFI51128.1| peptidoglycan-associated lipoprotein [Afipia sp. 1NLS2]
          Length = 162

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   +    + I  L+K  + L        +I GH D    R     N  L   R
Sbjct: 54  DRVFFDSDQTELSQQAINTLEKQAQWLQQYPRYTFTIEGHADE---RGTREYNIALGAKR 110

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+S  R+  IS +   R     + ++  S NRR
Sbjct: 111 AQSVRNFLVSRGISASRMRTIS-YGKERPVAVCNDISCWSQNRR 153


>gi|89890645|ref|ZP_01202155.1| outer membrane protein [Flavobacteria bacterium BBFL7]
 gi|89517560|gb|EAS20217.1| outer membrane protein [Flavobacteria bacterium BBFL7]
          Length = 659

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 226 ISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFR 278
           I + D  N  +      FD        +  + LQK+   +      I  IR HTD+    
Sbjct: 533 IKVGDDLNDILDLNMIYFDFDKHNIRYDAEIELQKVLAFMEAYPNSIIDIRSHTDSR--A 590

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSAN 331
           +    N +LS  RA S    L+  G+  +R++   G+  ++L          ++  +  N
Sbjct: 591 SDGY-NIKLSDRRAKSTRAYLIMKGIKANRLTA-RGYGEYQLVNECSNGVECTEEQHQLN 648

Query: 332 RRIDILVEDRQ 342
           RR + ++   +
Sbjct: 649 RRSEFIIMKLK 659


>gi|330892247|gb|EGH24908.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 150

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 51  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 107

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 108 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 148


>gi|312115989|ref|YP_004013585.1| peptidoglycan-associated lipoprotein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221118|gb|ADP72486.1| peptidoglycan-associated lipoprotein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 169

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+   P+   +L      L   T   I+I GH D    R     N  L   RA +   
Sbjct: 62  TDSAELSPDGQQILNAQAVWLRQYTNFPITIEGHADE---RGTREYNIALGAKRAETTKN 118

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
            L+  G+S  RI  IS +   R     D ++  S NRR  + V +  G
Sbjct: 119 FLIAQGISPQRIRTIS-YGKERPVAVCDDISCWSQNRR-TVTVLEGGG 164


>gi|251792474|ref|YP_003007200.1| Plp4 [Aggregatibacter aphrophilus NJ8700]
 gi|247533867|gb|ACS97113.1| Plp4 [Aggregatibacter aphrophilus NJ8700]
          Length = 278

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        +   V+ K+   L  S  + + + G+TD          N  LS  RA  
Sbjct: 144 LFDFDKDTLTEKGKEVVDKVAAQLKESKAQEVKVAGYTDRL---GSESYNMDLSQRRANR 200

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN------SANRRIDI 336
               L + GV   +IS +  G AH     +++  N        NRR++I
Sbjct: 201 VKARLTEQGVDA-QISAVGHGEAHQVKACSNEKGNKLISCLRPNRRVEI 248


>gi|163794640|ref|ZP_02188610.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159179913|gb|EDP64438.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 215

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH----TDASPFRNIARDNWRLSLDRA 292
           F  SS+         L K+ +    S   + + GH    T     R     N+ +SL RA
Sbjct: 107 FGHSSARLTGTERAELAKVAQTAIASGAAVRVIGHASARTADLDLRAHEVANFTMSLKRA 166

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
            +   VL+ +G+  +RI +I      + +         + NRR+++ +
Sbjct: 167 NAVADVLIHAGLPANRI-RIDALGDSQPEFYEVMPSGEAGNRRVEVFL 213


>gi|167738461|ref|ZP_02411235.1| hypothetical protein Bpse14_10350 [Burkholderia pseudomallei 14]
 gi|167815654|ref|ZP_02447334.1| hypothetical protein Bpse9_10954 [Burkholderia pseudomallei 91]
 gi|254188891|ref|ZP_04895402.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157936570|gb|EDO92240.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 277

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++ +     + + G+TD          N RLS +RA + 
Sbjct: 170 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277


>gi|88859106|ref|ZP_01133747.1| putative assembly or transport protein for curli synthesis
           [Pseudoalteromonas tunicata D2]
 gi|88819332|gb|EAR29146.1| putative assembly or transport protein for curli synthesis
           [Pseudoalteromonas tunicata D2]
          Length = 417

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT------PMFDKSS 241
            K++ +   ++  S  + L+  N  K V+   T+      +   +NT        F   S
Sbjct: 256 TKEQNEKFLEQARSKNAALMRKNQTKTVIATPTKEATTEQLALSKNTNALSFAVQFRTGS 315

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +   P     L  I  ++  +    I ++G  D    R + ++N  LSL R++S  Q L 
Sbjct: 316 AQLEPVYSEQLNSIVSLVKSTDYLAIELQGFADQ---RGLEQENRSLSLARSHSVAQYLN 372

Query: 301 KSGVSEDRISKISGFAHHRLKIA-SDPMNS-ANRRIDI-LVEDRQG 343
             G+ + RI  ++G    +     +DP     +RR+ + L++ R G
Sbjct: 373 NQGIVQQRI-SVAGLGDEQAVYQVTDPEGLFFDRRVIVKLIDTRSG 417


>gi|222081460|ref|YP_002540823.1| hypothetical protein Arad_7805 [Agrobacterium radiobacter K84]
 gi|221726139|gb|ACM29228.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 199

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292
           F   S    P +   L  I + L H          I GH  A+      + N+ LS  RA
Sbjct: 90  FQNDSVAIEPRSYRTLGLIADAL-HHPNLWAYKFLIVGHASAT---GGDKHNFELSSKRA 145

Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            +  + L  +  V  +R+  + G   +    A+    + NRR+
Sbjct: 146 DAIKEALATTFAVDSERLYAV-GVGEYFPIDAAKADAADNRRV 187


>gi|170717767|ref|YP_001784833.1| OmpA domain-containing protein [Haemophilus somnus 2336]
 gi|168825896|gb|ACA31267.1| OmpA domain protein transmembrane region-containing protein
           [Haemophilus somnus 2336]
          Length = 342

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +     PE    L  +   +A   T  +S+ G+TD          N +LS  RA + 
Sbjct: 229 FAFAKDTLKPEAQQTLDGVYGEIAQLKTAQVSVAGYTDRI---GSDASNLKLSQRRADTV 285

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----------ASDPMNSANRRIDILVEDRQ 342
              L+  GV++D IS + G+                  A     + +RR++I V+  +
Sbjct: 286 ANYLVSKGVAQDAISAV-GYGEANPVTGMKCDSVKGRKALIACLAEDRRVEISVKGSK 342


>gi|148554155|ref|YP_001261737.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148499345|gb|ABQ67599.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 196

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + ++   PE+   L  + + ++      + + G+TD       A  N RLS  RA   
Sbjct: 95  FLEGTTELTPESQPGLAFLIKEVSERPGAEVQVTGYTDTL---GEADANDRLSQQRAEEV 151

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             VL K G+    +S + G     L++A+       ANRR+ + +
Sbjct: 152 LGVLAKQGIDPTLMSAV-GRGERNLRVATPDGVSEPANRRVVVTI 195


>gi|52840894|ref|YP_094693.1| outer membrane protein, OmpA family protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628005|gb|AAU26746.1| outer membrane protein, OmpA family protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 249

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   I       +  ++ K  +           II      MF  SS          L  
Sbjct: 93  LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 150

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  +L       I + G TD    R+  R   +LS  +A +    L  +G++  R+    
Sbjct: 151 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 206

Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336
           G+   +  I+ +     ++ NRRI+I
Sbjct: 207 GYGD-KNAISDNAIIHGSAQNRRIEI 231


>gi|54293640|ref|YP_126055.1| hypothetical protein lpl0693 [Legionella pneumophila str. Lens]
 gi|54296680|ref|YP_123049.1| hypothetical protein lpp0711 [Legionella pneumophila str. Paris]
 gi|296106245|ref|YP_003617945.1| hypothetical protein lpa_01027 [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750465|emb|CAH11859.1| hypothetical protein lpp0711 [Legionella pneumophila str. Paris]
 gi|53753472|emb|CAH14927.1| hypothetical protein lpl0693 [Legionella pneumophila str. Lens]
 gi|295648146|gb|ADG23993.1| hypothetical protein lpa_01027 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 230

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   I       +  ++ K  +           II      MF  SS          L  
Sbjct: 74  LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 131

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  +L       I + G TD    R+  R   +LS  +A +    L  +G++  R+    
Sbjct: 132 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 187

Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336
           G+   +  I+ +     ++ NRRI+I
Sbjct: 188 GYGD-KNAISDNAIIHGSAQNRRIEI 212


>gi|45656096|ref|YP_000182.1| peptidoglycan associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|30984127|dbj|BAC76763.1| OmpA family outer membrane lipoprotein [Leptospira interrogans
           serovar manilae]
 gi|45599329|gb|AAS68819.1| peptidoglycan associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 195

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 27/181 (14%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            S  K+E    P  S ++  A   +         +       +AD++ + +       G+
Sbjct: 22  SSAEKKEESAAPEPSTQEQSAAANRN--------VDVNSPEAIADSLNEKLKDFRYPDGL 73

Query: 225 LISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVI------SIRGHTDAS-- 275
                     P F    +   P +     +    V+      +       I GHTDA   
Sbjct: 74  T--------RPGFSYKKADVTPGDFSEWSKTNAPVIKEGLGKLPDSYALEITGHTDAIGP 125

Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
                  + N   S  RA +  Q L+K G+  +RI    G          D  ++ NRR+
Sbjct: 126 EQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIV-TKGAGSSEPVSGLDAKDAKNRRV 184

Query: 335 D 335
            
Sbjct: 185 T 185


>gi|86131085|ref|ZP_01049684.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818496|gb|EAQ39656.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 278

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            + I+         +  K    E    G  I +       +F  + S    ++   L K+
Sbjct: 128 KEAIAEEKELEETKDRYKTFEDEPIVKGDRILL----KNILFKTNYSYIHGKSRKDLNKL 183

Query: 256 GEVLAHSTEVI-SIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            + LA   E+I  I+GH        D    +   R+   LS  RA   Y  L   GV++ 
Sbjct: 184 AKYLAAHPEIIFKIQGHVCCVDHGRDGINLKTGKRN---LSEARAKFIYDYLADHGVAKK 240

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338
           R+ +  GF         DP +    R++ILV
Sbjct: 241 RM-RYQGFGSRFPL-GGDPKDDK--RVEILV 267



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRL 287
           +D+ +   F+   S  +      L++    L     E ISI G+ D       A +NW L
Sbjct: 7   VDKTHETFFETDKSNLVAIENAKLERFITSLPLDKIEDISIYGYCDDR--GTDAYNNW-L 63

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRL-KIASDPMNSANRRIDILV 338
           S +RA +  Q  +  G+++  I    G       RL  + S+   + NR+++I+V
Sbjct: 64  SQERANTIKQKFVDRGIADSIIKNSDGKGELLLTRLDDVGSEVQRTLNRKVEIIV 118


>gi|27377528|ref|NP_769057.1| hypothetical protein bll2417 [Bradyrhizobium japonicum USDA 110]
 gi|27350672|dbj|BAC47682.1| bll2417 [Bradyrhizobium japonicum USDA 110]
          Length = 213

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S+     ++  +Q +G+ L+          + GHTDA         N  LS  RA 
Sbjct: 104 FDYNSADIAKTSVPSVQALGKALSDPALKGSTFVVAGHTDAI---GGEEYNQGLSERRAD 160

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  + L+++ G++   +  + G+   +LK  ++  +  NRR+ ++  D +
Sbjct: 161 TIKKYLVQNYGLNGTDLVTV-GYGKTKLKDTANGADPINRRVQVVNMDTK 209


>gi|328953892|ref|YP_004371226.1| peptidoglycan-associated lipoprotein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454216|gb|AEB10045.1| peptidoglycan-associated lipoprotein [Desulfobacca acetoxidans DSM
           11109]
          Length = 191

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I  +     F+        E+  +LQK    L    E  I+I GH D    R  +  N  
Sbjct: 76  IAFESEDVFFEYDQFTLTSESRSLLQKKASFLQKHPEIQITIEGHCD---IRGSSDYNLG 132

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           L   RA SA   L   G++ +R+S IS +   +     D     + NRR
Sbjct: 133 LGQKRADSAKSYLQDLGIAGNRLSTIS-YGKEQPVAHGDTEEAHARNRR 180


>gi|294676664|ref|YP_003577279.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294475484|gb|ADE84872.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 185

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+         LQ+        +    I GHTD+   R     N RLS  RA + 
Sbjct: 87  LFATDSTKLTASGRGYLQQFFTTAQARS--FIITGHTDS---RASDEYNMRLSKGRAEAV 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             V  + G     +  ++ +     K  +      + NRR++++
Sbjct: 142 AGVAQQVGAP---VLAVNWYGERMPKATNATAAGMAQNRRVEVI 182


>gi|212634139|ref|YP_002310664.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212555623|gb|ACJ28077.1| OmpA [Shewanella piezotolerans WP3]
          Length = 187

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ + S  L     VL++I   L      + + G+TD+         N RLSL RA S  
Sbjct: 85  FEFAKSEILSSQRAVLERISAWLTQVPARLLLVGYTDSI---GGEAFNHRLSLLRAKSVK 141

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           Q L+       +R   I G         +      + NRR++  V
Sbjct: 142 QALITEFNFEPERFD-IKGVGSQAPIANNRTGSGRALNRRVEFYV 185


>gi|323529150|ref|YP_004231302.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323386152|gb|ADX58242.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 349

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPE 247
           +KRL D+   +  +    +           TT   + +   D      FD    +  LP 
Sbjct: 192 EKRLSDIQDNLRKSAESALQCKPAAAAPQSTTPQAVTLR-ADSLFR--FDGGNDAAMLPA 248

Query: 248 TIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
               L  +   L   T    I I G+TD        R    LSL RA +  + L   GV+
Sbjct: 249 GRRALDAVARRLTTVTALREIRITGYTDRLGENAHNRS---LSLQRAQTVARYLRARGVT 305

Query: 306 EDRISKISGFAHHRLKI-----ASDPM---NSANRRIDI 336
                 + G A             D +    + NRR++I
Sbjct: 306 SP--IAVRGLASANPVAECRQSRRDELVQCLAPNRRVEI 342


>gi|226226461|ref|YP_002760567.1| hypothetical protein GAU_1055 [Gemmatimonas aurantiaca T-27]
 gi|226089652|dbj|BAH38097.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 531

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 27/128 (21%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +T +F    ++ L      L+ I +V+  +    ISI GHTD   + + A +N +L+  R
Sbjct: 378 DTTLFSFDRAVVLKAGNDTLKVIVDVMKANPSIRISIEGHTDW--YGSEAYNN-KLAKSR 434

Query: 292 AYSAY-QVLMKSGVSEDRIS-KIS-------------GFAHHRLKIAS-----DPMN--- 328
           A + Y Q+L  +G   D I  ++              G        A+     D      
Sbjct: 435 AEAVYKQLLKVAGTDADAIKGRVVWSSFGEQCILVRDGDTEQEPPPANRSRISDANRRAQ 494

Query: 329 SANRRIDI 336
           +ANRR++I
Sbjct: 495 AANRRVEI 502


>gi|213969192|ref|ZP_03397331.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato T1]
 gi|213926190|gb|EEB59746.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv.
           tomato T1]
          Length = 151

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 52  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 108

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 109 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 149


>gi|126727642|ref|ZP_01743474.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126703058|gb|EBA02159.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 199

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F         +   +L       + +  VI   GHTD+   R     N RLS +RA + 
Sbjct: 101 LFATDRYRITSKGRALLADFFNSSSAAAYVIV--GHTDS---RASDEYNMRLSQNRANAV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
             V    G    R+  I  +     +  +       ANRR++I+
Sbjct: 156 ANVASSLG---ARVVDIRHYGERMPRATNRTAAGRQANRRVEIM 196


>gi|116329456|ref|YP_799176.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329940|ref|YP_799658.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122200|gb|ABJ80243.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123629|gb|ABJ74900.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 195

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
             +  KEE+    P ++E+  A  R          +       +AD++ + +       G
Sbjct: 22  SSAEKKEESAAPEPSAQEQSAAANRS---------VDVNSPEAIADSLNEKLKDFRYPDG 72

Query: 224 ILISIIDQRNTPMFDKSSSIPLP-----ETIVVLQKIGEVLAHSTEV--ISIRGHTDAS- 275
           I          P F    +   P      + V +  I E L    +   + I GHTDA  
Sbjct: 73  IT--------RPGFSYKKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHTDAVG 124

Query: 276 --PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                   + N   S  RA +  Q L+K G+  +RI    G          D  ++ NRR
Sbjct: 125 PEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIIA-KGAGSSEPVSGLDAKDAKNRR 183

Query: 334 ID 335
           + 
Sbjct: 184 VT 185


>gi|114046783|ref|YP_737333.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113888225|gb|ABI42276.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 191

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
           A++   +++ GHTD          N++LSL RA +  ++L++  G + +R + + G    
Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VIGKGIS 166

Query: 319 RLKIASD--PMNSANRRIDILVED 340
                +        NRR+  +V +
Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190


>gi|113969550|ref|YP_733343.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113884234|gb|ABI38286.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 191

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
           A++   +++ GHTD          N++LSL RA +  ++L++  G + +R + + G    
Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VIGKGIS 166

Query: 319 RLKIASD--PMNSANRRIDILVED 340
                +        NRR+  +V +
Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190


>gi|148360690|ref|YP_001251897.1| OmpA family transporter outer membrane protein [Legionella
           pneumophila str. Corby]
 gi|148282463|gb|ABQ56551.1| outer membrane protein, OmpA family protein [Legionella pneumophila
           str. Corby]
          Length = 240

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   I       +  ++ K  +           II      MF  SS          L  
Sbjct: 84  LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 141

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  +L       I + G TD    R+  R   +LS  +A +    L  +G++  R+    
Sbjct: 142 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 197

Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336
           G+   +  I+ +     ++ NRRI+I
Sbjct: 198 GYGD-KNAISDNAIIHGSAQNRRIEI 222


>gi|304312855|ref|YP_003812453.1| Outer membrane protein [gamma proteobacterium HdN1]
 gi|301798588|emb|CBL46818.1| Outer membrane protein [gamma proteobacterium HdN1]
          Length = 285

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIG--EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +      P  +    L  I   + L      I + GH+D          NW +S  RA +
Sbjct: 181 YASEQWKPDGKAQARLDLIAGYQKLDAGIRKIFVDGHSDTM---GRLGHNWEVSRLRANA 237

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334
             + L+  GV E+ I  +  G +    K  +   + ANRR+
Sbjct: 238 VREYLIAKGVPEEMIVMRYWGKSRPIDKRGNRKSSPANRRV 278


>gi|296269185|ref|YP_003651817.1| OmpA/MotB domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296091972|gb|ADG87924.1| OmpA/MotB domain protein [Thermobispora bispora DSM 43833]
          Length = 193

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           + + + +  ++A+           + G  I++    +  +F    +    +    L++I 
Sbjct: 43  EDLITPVEDVIAEVESLDGTESEEKQGEQITLALTAD-VLFPLDKATLTAKARQRLREIA 101

Query: 257 EVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           E +    +  +I + GHTD          N  LS  RA +  +VL +     +   +  G
Sbjct: 102 EKIKSDGAGGLIRVEGHTDDQ---GSDAYNLALSRRRAEAVRRVLERELAGMNVTLQAKG 158

Query: 315 FAHHRLKIAS-------DPMNSANRRIDILVEDRQ 342
           +   R K+ +       +   + NRR++I+   R+
Sbjct: 159 YGESRPKVPNFIKGRPVEKNRAKNRRVEIIFTARR 193


>gi|54302438|ref|YP_132431.1| OmpA family protein [Photobacterium profundum SS9]
 gi|46915860|emb|CAG22631.1| hypothetical OmpA family protein [Photobacterium profundum SS9]
          Length = 252

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 14/163 (8%)

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM------- 236
              + K + +D+ +  +        D        E  R    + +  +    +       
Sbjct: 80  QDEQIKSQNEDMVELTARNTELERIDINYNQAQIEIARLQQDLQLQSEERQALMLEVNVH 139

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     L +I E++  S E+   + G+ D    R  ++ N+ LS+ R  + 
Sbjct: 140 FRTGSSDIEPLFQQQLDEIAELMKQSPEMSWQLAGYADR---RGDSQKNFDLSMRRVDAV 196

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              L   G+  D++  +  +       +     S   +RR+ +
Sbjct: 197 RDYLESQGLDTDQLL-VDAYGDLEPLKSEQNFESDFFDRRVTL 238


>gi|254452426|ref|ZP_05065863.1| OmpA domain protein [Octadecabacter antarcticus 238]
 gi|198266832|gb|EDY91102.1| OmpA domain protein [Octadecabacter antarcticus 238]
          Length = 612

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ SS+        +L  I E+L   +   I I G+TD+         N RLS  RA + 
Sbjct: 470 FEPSSARIAGAGAAILDDITEILQRCADLRIEIAGYTDSQ---GSEDGNQRLSQQRADAV 526

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              L    V       + G+        ++  +    NRRI+  +
Sbjct: 527 LDGLRVRRVPVASFRSV-GYGEADPIADNETADGREANRRIEFSL 570


>gi|163740457|ref|ZP_02147851.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161386315|gb|EDQ10690.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 326

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  +     +    L  + E L  + +  + + GHTD          N  +S  RA + 
Sbjct: 222 FETGAVTLGAKPYDSLAALAEFLIQNPDFDVLLVGHTDTV---GSLEQNIAISERRADAV 278

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
             ++L  S V   R+  ++G         +       ANRR+++++  R
Sbjct: 279 RRRLLADSAVGGARV-AVAGAGFMAPLTTNLTPEGREANRRVEVVLIRR 326


>gi|261868235|ref|YP_003256157.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|2828561|gb|AAC00068.1| outer membrane protein 34 [Aggregatibacter actinomycetemcomitans]
 gi|261413567|gb|ACX82938.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 346

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      + + G+TD     + A  N +LS  RA + 
Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GVS+  IS  +G         +  D +            +RR++I V
Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGNKCDAVKGRKALIACLADDRRVEIAV 342


>gi|307609455|emb|CBW98949.1| hypothetical protein LPW_07341 [Legionella pneumophila 130b]
          Length = 240

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           L   I       +  ++ K  +           II      MF  SS          L  
Sbjct: 84  LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 141

Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +  +L       I + G TD    R+  R   +LS  +A +    L  +G++  R+    
Sbjct: 142 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 197

Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336
           G+   +  I+ +     ++ NRRI+I
Sbjct: 198 GYGD-KNAISDNAIIHGSAQNRRIEI 222


>gi|284042425|ref|YP_003392765.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
 gi|283946646|gb|ADB49390.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
          Length = 716

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F       L +     + I   L    + ++  GHTD+         N  L L RA +  
Sbjct: 616 FRVGDDTLLAQGRRYARAIAPQLKGV-KRVTCTGHTDSDGGVVA---NRALGLARAKAVC 671

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             L + GV     ++ +G    R +  +D       NRR+++ +  R
Sbjct: 672 AELRRLGVKAPLRTRSAG--ESRPRATNDTAQGRRLNRRVELTLSYR 716


>gi|284035326|ref|YP_003385256.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283814619|gb|ADB36457.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 399

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD+SS +  PE+   L ++  VL  S    I IRGHTD          N +LS DR  + 
Sbjct: 297 FDQSSPVLRPESSTELDQLAAVLLESPTTKIEIRGHTDNQ---GDFDSNVKLSRDRCQAV 353

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323
              L   G++++R+  + G         
Sbjct: 354 IDYLASKGIAKNRLKAV-GRGPIDPVAP 380


>gi|261378312|ref|ZP_05982885.1| OmpA family protein [Neisseria cinerea ATCC 14685]
 gi|269145408|gb|EEZ71826.1| OmpA family protein [Neisseria cinerea ATCC 14685]
          Length = 257

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F     +   E    L  + + L  +    + + GHTD   F    + N  LS  RA  
Sbjct: 93  LFGFDKDVLRVEAQENLNVLAQRLGQTNVQAVRVEGHTD---FMGAEKYNQELSERRANV 149

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+  GV   +IS  +G    +
Sbjct: 150 VANYLVGRGVPAAKISA-AGLGESQ 173


>gi|319409315|emb|CBI82959.1| Outer membrane lipoprotein omp16 homolog [Bartonella
           schoenbuchensis R1]
          Length = 173

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F  +SS    +   VL++  E L       +++ GH D    R     N  L   R
Sbjct: 62  DRVFFSLNSSSIELDAEYVLKRQAEWLLRYPHYFVTVEGHADD---RGTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           + +    L+  GVS  R+  IS +   R     D ++  + NRR+ + +    G
Sbjct: 119 SIAVRDYLVSLGVSSQRMKTIS-YGKERPVAVCDDISCWNQNRRVVLTINSGNG 171


>gi|83720431|ref|YP_442168.1| OmpA family protein [Burkholderia thailandensis E264]
 gi|83654256|gb|ABC38319.1| OmpA family protein [Burkholderia thailandensis E264]
          Length = 224

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       I  +     N           RR+++ V   Q
Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214


>gi|323491407|ref|ZP_08096592.1| Outer membrane protein [Vibrio brasiliensis LMG 20546]
 gi|323314533|gb|EGA67612.1| Outer membrane protein [Vibrio brasiliensis LMG 20546]
          Length = 203

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SS   P  +  ++++ E L       I +RG+  AS        N  LS  RA S
Sbjct: 83  LFANDSSEIQPAFLAQIREMSEFLEAYPSTSIELRGY--ASKVGKPDY-NMALSERRAQS 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
               L+ +GV+ DR+ +I GF    L+   D    ++ NR++   V   +G
Sbjct: 140 VEDALLDNGVASDRV-RIVGFGDTELEAFGDDEISHAKNRKVVATVVGHKG 189


>gi|149915621|ref|ZP_01904147.1| peptidoglycan-associated lipoprotein [Roseobacter sp. AzwK-3b]
 gi|149810513|gb|EDM70356.1| peptidoglycan-associated lipoprotein [Roseobacter sp. AzwK-3b]
          Length = 171

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E   VL    + L  +      I GH D          N  L   R
Sbjct: 61  DRVLFAVDQSTLSSEAQAVLDGQAQWLMTNIDYSAVIEGHADEQ---GTREYNLALGARR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR-IDIL 337
           A +  + L+  G++ +R+ K+  +   R     +++   + NRR + ++
Sbjct: 118 ANAVQEYLVSRGIAGNRL-KVVSYGKERPIELCSNEACYAKNRRAVTVI 165


>gi|186477671|ref|YP_001859141.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194130|gb|ACC72095.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 590

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-----AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F  S +         L +  ++L     +     + + G++D          N  LS +R
Sbjct: 482 FASSDAHVPQSAFDDLGQSAKLLQACAKSGHALKLEVAGYSDNV---GSESANRELSKER 538

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           A +    L+K+GV  D +    G+ + R   ++   +    NRRI+
Sbjct: 539 ADAVRAFLVKAGVPADALIA-RGYGNVRAVASNATESGRFANRRIE 583


>gi|89890270|ref|ZP_01201780.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7]
 gi|89517185|gb|EAS19842.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7]
          Length = 286

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 12/172 (6%)

Query: 175 LPPLSKEKILAMKRKKRLQDLA---KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
           +P  ++  I A + + R  +++   K+       +V D+I K   ++  +  + I     
Sbjct: 112 VPLKNRSNIKAQRYRNRRVEISVTYKRTIDIPKAVVNDSIEKYRSYDILKDSLQIGDKLV 171

Query: 232 RNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGH----TDASPFRNIARDNWR 286
            N  +F     +    +  V+  I   +L H    I I+GH    +     R++    W 
Sbjct: 172 FNNVIFYPGRHVLRESSFPVMDSIINSLLLHKKYEIEIQGHICCLSPGVYGRDMDTGQWN 231

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           LS  RA    + L+K GV+ DR++ I   A+      +   +  +RR++I +
Sbjct: 232 LSKARAEQVKRFLVKYGVAADRLTTIGKQAN----FKTGKGDFYDRRVEIHI 279


>gi|48429443|gb|AAT42489.1| HMP-like outer membrane protein [Acinetobacter junii]
          Length = 284

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ + L         I GHTD +      + N RLSL RA
Sbjct: 202 RVFFDTNKSNIKDQYKPEVAKVADALNTFPNATARIEGHTDNT---GPRKLNERLSLARA 258

Query: 293 YSAYQVLMKSGVSEDRISKISGFA 316
            S    L+     +       GFA
Sbjct: 259 NSVKSALVSEYNIDASRLSTQGFA 282


>gi|37704632|gb|AAR01588.1| OprF [Pseudomonas sp. MFY78]
          Length = 317

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 234 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRASAV 290

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 291 KQVLTGQYGVESSRVQSV-GYGESRPVA 317


>gi|255655882|ref|ZP_05401291.1| hypothetical protein CdifQCD-2_09334 [Clostridium difficile
           QCD-23m63]
 gi|296450696|ref|ZP_06892449.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879187|ref|ZP_06903182.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260540|gb|EFH07382.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429730|gb|EFH15582.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 210

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249
           S ++SG V  ++ K V    E T     I + +D+ N         MFD  S +  PE  
Sbjct: 40  SESISGSVEQDLAKNVNTSVEETFKKSGIPVKVDKSNGQVTFGERTMFDIDSDVLKPEAK 99

Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            +L+         +     + IS   I GHTD          N  LS  RAYS  + ++ 
Sbjct: 100 EMLKMFVPKYMETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156

Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336
             + +    D+++K I      + ++  +  NS N    RR+++
Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200


>gi|37704656|gb|AAR01600.1| OprF [Pseudomonas sp. MFY146]
          Length = 297

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   + +  ++ + + +        ++ G+TD+         N +LS  RA S 
Sbjct: 215 FDFDKAVVKSQYLPDIKNVAQFMQQYPATSTTVNGYTDSV---GTDAYNLKLSQRRADSV 271

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
            Q L++ GVS  R+  + G        
Sbjct: 272 RQALVQQGVSPSRVDAV-GHGKSDPVA 297


>gi|332291797|ref|YP_004430406.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169883|gb|AEE19138.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 292

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 25/204 (12%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
               +     KG+ L    D   S  + +      +      A K      ++A++I++ 
Sbjct: 96  ADTIIKNSDGKGELLLTRLDDAGSEIQRKLNRKVEIIVSLKQARKTTPEEVEVAEEITTK 155

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           +         K    +T   G  I +       +F  + S    ++   L+K+ + L   
Sbjct: 156 IDRY------KNYEEDTIAKGDRILL----KNILFKTNYSYIHGKSYNDLKKLAKYLKEH 205

Query: 263 TEVI-SIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            E+I  I+GH        D    +   R+   LS  RA   Y  L   GV++ R+ +  G
Sbjct: 206 PEIIFKIQGHVCCVDHGRDGINLKTGKRN---LSEARAKFIYDYLADQGVAKKRM-RYQG 261

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
           F         DP      R++I V
Sbjct: 262 FGSRFPL-GGDPSEDK--RVEIYV 282



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 229 IDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           +D+ +   FD   S++   E   + + I  +     E ISI G+ D    R     N RL
Sbjct: 22  VDRTHETFFDTDKSALIKTELASLNRFIASLPKDKIEDISIYGYCDD---RGTDAYNKRL 78

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRLKIA-SDPMNSANRRIDILVEDRQG 343
           S DRA +   + M  GV++  I    G       RL  A S+     NR+++I+V  +Q 
Sbjct: 79  SQDRANTIKDIFMLQGVADTIIKNSDGKGELLLTRLDDAGSEIQRKLNRKVEIIVSLKQA 138


>gi|254787356|ref|YP_003074785.1| thrombospondin type 3 repeat family protein [Teredinibacter turnerae
            T7901]
 gi|237685616|gb|ACR12880.1| thrombospondin type 3 repeat family protein [Teredinibacter turnerae
            T7901]
          Length = 3177

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 237  FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +S++   ET   L  + +    A+    + I GH D   +      N  LS  RA +
Sbjct: 3074 FAFNSAVLSAETQAQLDALAQGVAAANYDFRVKIAGHAD---WVGSEAFNQGLSEKRANA 3130

Query: 295  AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                L +            G+   +    ++     + NRR++I
Sbjct: 3131 VANYLSERLQLNAEKWDTRGYGEVKPVADNNSAQGRAQNRRVEI 3174


>gi|332297504|ref|YP_004439426.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
 gi|332180607|gb|AEE16295.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168]
          Length = 1044

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 249  IVVLQKIGEVLAHS-TEVISIRGHTDASPFR-----NIARDNWRL---SLDRAYSAYQVL 299
            I V+++I E+L       + I GH +          + A  N  L   S  RA +  ++L
Sbjct: 943  IRVIKRIAEILNKFKDYTVRIEGHANNVTGTEAEETSTANGNIPLVPLSEARAQTVKKML 1002

Query: 300  MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            ++ GV   R++ + G    +  +     ++   NRR++ ++
Sbjct: 1003 IEFGVDGSRLTTV-GIGGRQPVVPRSDKDNWWKNRRVEFIL 1042


>gi|259908883|ref|YP_002649239.1| outer membrane protein A [Erwinia pyrifoliae Ep1/96]
 gi|224964505|emb|CAX56015.1| Outer membrane protein A [Erwinia pyrifoliae Ep1/96]
 gi|283478876|emb|CAY74792.1| Outer membrane protein A precursor [Erwinia pyrifoliae DSM 12163]
          Length = 355

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 227 KSDVLFTFNKANLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----PMNSA-------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +        +A       +RR++I 
Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISA-RGEGESNPVTGNTCDSVKGRAALIDCLSPDRRVEIQ 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|309751191|gb|ADO81175.1| Outer membrane protein P5 [Haemophilus influenzae R2866]
          Length = 358

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 302 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354


>gi|310816576|ref|YP_003964540.1| OmpA/MotB family protein [Ketogulonicigenium vulgare Y25]
 gi|308755311|gb|ADO43240.1| OmpA/MotB family protein [Ketogulonicigenium vulgare Y25]
          Length = 185

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E   +L    + L  ++   I I GH D          N  L   R
Sbjct: 75  DRILFAVDQSSVSSEASQILNGQAQWLQTNSQYGIVIEGHADEQ---GTREYNVALGARR 131

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337
           A +  + L+  G+S +RI  +S +   R        +  + NRR + ++
Sbjct: 132 ANAVREYLISRGISANRIRTVS-YGKERPIAVCSAESCYTQNRRAVTVI 179


>gi|37704618|gb|AAR01581.1| OprF [Pseudomonas sp. MFY65]
          Length = 317

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +    +  ++  GHTD+         N +LS  RA + 
Sbjct: 234 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 290

Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322
             VL  + GV   R+  + G+   R   
Sbjct: 291 KDVLTQQYGVESTRVDSV-GYGETRPVA 317


>gi|37680143|ref|NP_934752.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|320156108|ref|YP_004188487.1| outer membrane protein [Vibrio vulnificus MO6-24/O]
 gi|326423995|ref|NP_761229.2| outer membrane protein [Vibrio vulnificus CMCP6]
 gi|37198889|dbj|BAC94723.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|319931420|gb|ADV86284.1| outer membrane protein [Vibrio vulnificus MO6-24/O]
 gi|319999372|gb|AAO10756.2| Outer membrane protein [Vibrio vulnificus CMCP6]
          Length = 223

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ + ++L    +  + I G TD++        N  LS  RA S    L+   V+  R  
Sbjct: 134 LKGVAQILVEYPDTSLVIDGFTDST---GNDASNQILSERRAESVRSFLISQNVAAGRAV 190

Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342
              G          ++    + NRR++I +   +
Sbjct: 191 A-RGNGERYPLCTNSTAEGRACNRRVEIQILPLK 223


>gi|129136|sp|P09146|OMPA_ENTAE RecName: Full=Outer membrane protein A; Flags: Precursor
 gi|40838|emb|CAA25062.1| unnamed protein product [Enterobacter aerogenes]
          Length = 350

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     +    N +LS
Sbjct: 222 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEQY-NQKLS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR+ I 
Sbjct: 279 EKRAQSVVDYLVAKGIPANKISA-RGMGESDPVTGNTCDNVKARAALIDCLAPDRRVAIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|121608000|ref|YP_995807.1| OmpA domain-containing protein [Verminephrobacter eiseniae EF01-2]
 gi|121552640|gb|ABM56789.1| OmpA domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 182

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   +++     +   +   + + GHTD    R     N  L   RA + 
Sbjct: 81  FDYDSYVIKPEFQTLIEAHSRFIKTDTKRKLMLEGHTDE---RGGREYNLSLGQKRAEAV 137

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            + L   GV + ++  +S F   +L +   ++  ++ NRR++
Sbjct: 138 RRALGLLGVPDSQMEAVS-FGKEKLAVQGHTEEAHAQNRRVE 178


>gi|241764618|ref|ZP_04762633.1| peptidoglycan-associated lipoprotein [Acidovorax delafieldii 2AN]
 gi|241365939|gb|EER60569.1| peptidoglycan-associated lipoprotein [Acidovorax delafieldii 2AN]
          Length = 178

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   +++     +  S+   + + GHTD    R     N  L   RA + 
Sbjct: 77  FDYDSYVIKPEFQSLIEAHARFIKSSSNRKVVVEGHTDE---RGGREYNLALGQKRAEAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            + L   GV + ++  +S F   +L +     +  + NRR ++
Sbjct: 134 RRSLGLLGVPDSQVEAVS-FGKEKLAVQGTGEDVHAQNRRAEL 175


>gi|254509401|ref|ZP_05121484.1| sodium-type flagellar protein MotY  (Polar flagellum motorprotein)
           [Vibrio parahaemolyticus 16]
 gi|219547675|gb|EED24717.1| sodium-type flagellar protein MotY (Polar flagellum motorprotein)
           [Vibrio parahaemolyticus 16]
          Length = 168

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S     ++   L +I E + H+ ++  + +  +TDA   ++ +++   LS  RA  
Sbjct: 62  YDRTSVELNKQSQKRLAQIAEYIRHNQDIDLVLVSTYTDAEDSKSASQN---LSERRAEV 118

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 119 LQDYFKSLGLPEDRI-RVQGYGKRRPVDDNASPIGKDRNRRVVISLGRTQ 167


>gi|332883506|gb|EGK03789.1| hypothetical protein HMPREF9456_01856 [Dysgonomonas mossii DSM
           22836]
          Length = 660

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               ++   +  LPE+   L  + ++L  +  V I +  H D    +     N +LS  R
Sbjct: 521 ENIFYEFDKATLLPESKKELDGLIDLLNTNPNVTIELSAHADR---KGSDDYNIKLSQRR 577

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           A S    L+  G+S+DR++ + G      K  +
Sbjct: 578 AESVVNYLIAGGISKDRLTAV-GKGKSEPKTVT 609


>gi|315181670|gb|ADT88583.1| outer membrane protein, hypothetical [Vibrio furnissii NCTC 11218]
          Length = 208

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +SS   P  +  ++++ + L    E  I ++G+         A  N  LS  R+ +
Sbjct: 88  LFANNSSTIPPVFMNQIRQMADFLKLFPEASIELQGYASKV---GKADHNLALSKQRSEA 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
               L++ GV+  RI +I G+    L +  +    ++ NRR+   V   +G
Sbjct: 145 VRLQLLRFGVTPKRI-RIVGYGDTVLAVNGEDQVSHAQNRRVTASVVGFKG 194


>gi|260582095|ref|ZP_05849889.1| outer membrane protein P5 [Haemophilus influenzae NT127]
 gi|260094727|gb|EEW78621.1| outer membrane protein P5 [Haemophilus influenzae NT127]
          Length = 350

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 237 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 293

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 294 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 346


>gi|167950569|ref|ZP_02537643.1| flagellar motor protein MotD [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 89

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
          + +    + P +   W + YADF+T+L AFF+VM+ +++ ++   + +    +   K  
Sbjct: 3  RSRRKRVEEPVHHERWIVSYADFITLLFAFFVVMYSLSSVNEGKYRVLSNTLSQAFKEA 61


>gi|309973370|gb|ADO96571.1| Outer membrane protein P5 [Haemophilus influenzae R2846]
          Length = 359

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355


>gi|294676060|ref|YP_003576675.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474880|gb|ADE84268.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 223

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
            D  NT  F  +S          L +    +         + GHTD          N  L
Sbjct: 64  QDVPNTVNFAFNSDRLDGTAQAALAQQANWIKQFPEVKFRVYGHTD---LVGSDAYNKAL 120

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            L RA +    L   G+S  R+  +  +   +  +     N+ NRR
Sbjct: 121 GLRRARAVVAFLTGQGISRSRLEAVVSYGKTQPLVYDPGPNAQNRR 166


>gi|330984878|gb|EGH82981.1| OmpA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 381

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +               +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSTPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +    + + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|260363440|ref|ZP_05776286.1| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|308113738|gb|EFO51278.1| outer membrane protein [Vibrio parahaemolyticus K5030]
          Length = 166

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   S    P     ++++ + L       I ++G+   +     ++ N  LS  RA
Sbjct: 81  RVLFANDSDEINPVFRRQIRELSDFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +    L+  G+  +R+ +I GF    L
Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHL 164


>gi|148251854|ref|YP_001236439.1| OmpA family protein [Bradyrhizobium sp. BTAi1]
 gi|146404027|gb|ABQ32533.1| putative exported protein of unknown function with OmpA family
           domain [Bradyrhizobium sp. BTAi1]
          Length = 727

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+ +  LQ I + L  + +        I GHTDA        DN  LS  R
Sbjct: 601 FETGSWEIGPDQVAKLQVIADGLNQAIQRNPREVFLIEGHTDAV---GNETDNLSLSDRR 657

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  GV  + ++   G+    LK  +   +  NRR+ +
Sbjct: 658 AESVATLLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSRINRRVTV 702


>gi|302343856|ref|YP_003808385.1| peptidoglycan-associated lipoprotein [Desulfarculus baarsii DSM
           2075]
 gi|301640469|gb|ADK85791.1| peptidoglycan-associated lipoprotein [Desulfarculus baarsii DSM
           2075]
          Length = 179

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
            I + ++   FD        E   +L    + L+   EV + + GH D    R     N 
Sbjct: 69  EIFENQDVH-FDYDRYDLSAEAKQILNDKAQFLSQHPEVTVIVEGHCDE---RGSNSYNM 124

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            L   RA +  Q LM  GV+ DR+  +S +   R  +  +     +ANRR
Sbjct: 125 ALGEKRARACEQYLMAMGVASDRLEVVS-YGEERPLVPGNTEEAYAANRR 173


>gi|37679367|ref|NP_933976.1| sodium-type flagellar protein MotY precursor [Vibrio vulnificus
           YJ016]
 gi|37198110|dbj|BAC93947.1| sodium-type flagellar protein MotY precursor [Vibrio vulnificus
           YJ016]
          Length = 295

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++++       +   L +I E + +++++  + +  +TD++   +++++   LS  RA S
Sbjct: 189 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 245

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G+ EDRI ++ G+   R    +        NRR+ I +
Sbjct: 246 LRDYFKALGLPEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 290


>gi|330814393|ref|YP_004358632.1| 18K peptidoglycan-associated outer membrane lipoprotein [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487488|gb|AEA81893.1| 18K peptidoglycan-associated outer membrane lipoprotein [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 155

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +   F  +S+         L K    +  S   + I GH D    R     N  L   RA
Sbjct: 50  DRVFFATNSTGLTSAAKTTLTKQAGYIKSSKIYVVIEGHADE---RGTREYNLALGERRA 106

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
            +A   LM  GV++  I K+  +   R         +   NRR  + V+ +
Sbjct: 107 NAARDYLMAKGVAKSSI-KVISYGKERPANTDSSKLAWSQNRR-SVTVKAK 155


>gi|294670740|ref|ZP_06735604.1| hypothetical protein NEIELOOT_02451 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307548|gb|EFE48791.1| hypothetical protein NEIELOOT_02451 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 278

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FDK   +    +    L  +   L      + + I GHTD   +      N RLS  RA 
Sbjct: 160 FDKGDLAHMNAQGKAELDDVAAKLGRLERLDQVRIIGHTD---YLGSDSYNMRLSQQRAE 216

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA--------NRRIDILV 338
           +    L+  GV  + +    G    +      +  N A        NRR+++ V
Sbjct: 217 TVRNYLISRGVPAN-VLYAYGAGETQPVKQCDNRGNRAELIACLQPNRRVELEV 269


>gi|193212309|ref|YP_001998262.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
 gi|193085786|gb|ACF11062.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
          Length = 169

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  SS    E    L++    +  +     +I+GH D    R     N  L   R
Sbjct: 64  GDIFFDFDSSALSDEAQEQLKQNAAWMEKNPLVNATIQGHCDE---RGTDEYNLALGERR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A +A + L+ +GVS  R++ +S F          ++   + NRR
Sbjct: 121 ATAAKEYLITAGVSAGRLTAVS-FGEEMPFDPGHNEEAWAKNRR 163


>gi|72162680|ref|YP_290337.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Thermobifida fusca YX]
 gi|71916412|gb|AAZ56314.1| similar to Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Thermobifida
           fusca YX]
          Length = 356

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + S         L+ + E + A ST  + I GHTD +   N A +N  LSLDRA +
Sbjct: 252 LFDLNESTLTDAADETLRAVAEEIDASSTTTVKIDGHTDNT--GNDAINN-PLSLDRAKA 308

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
             + L +    +    +++G         +  +   + NRR+ I
Sbjct: 309 VEKRLKELITRDGITFEVAGHGSADPVADNGTEEGRAKNRRVTI 352


>gi|269962097|ref|ZP_06176451.1| sodium-type flagellar protein MotY [Vibrio harveyi 1DA3]
 gi|269833181|gb|EEZ87286.1| sodium-type flagellar protein MotY [Vibrio harveyi 1DA3]
          Length = 293

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +++        +   L +I + + H+ ++  + +  +TD++  ++ ++    LS  RA S
Sbjct: 187 YERQGDQLTKASKKRLSQIADYVRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+S DRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRTYFESLGLSGDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292


>gi|86748938|ref|YP_485434.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
 gi|86571966|gb|ABD06523.1| OmpA/MotB [Rhodopseudomonas palustris HaA2]
          Length = 165

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L K  + L        +I GH D    R     N  L   R
Sbjct: 57  DRVFFESDQTDLSPQAIATLDKQAQWLQSYNRYSFTIEGHADE---RGTREYNIALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 114 AQSVRNYLASRGIDPSRMRTIS-YGKERPVAVCNDISCWSQNRR 156


>gi|260911408|ref|ZP_05917999.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634455|gb|EEX52554.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 686

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D       PE+   L ++ ++L  +  V I +  H D   +R     N  L+  R
Sbjct: 519 DNIFYDLDKYTLRPESKQALDELVKLLNENPNVTIELSAHCD---YRGTPEYNKTLAQHR 575

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L+++G++  R++ + G+   + K
Sbjct: 576 ANAVVHYLIEAGIAPQRLTPM-GYGKEKPK 604


>gi|148554094|ref|YP_001261676.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148499284|gb|ABQ67538.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 295

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    E    L         +   +  + G+TD++        N  LS  RA   
Sbjct: 184 FDTGKTELSAEDKAHLCSTASTAEATENALMLVVGYTDST---GSDDFNQELSEKRANRV 240

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L ++ G    R+   +G A       +D     + NRR+ + + 
Sbjct: 241 INYLQQACGWKPYRMLTPTGMAKADPAATNDTPEGKAQNRRVAVNIL 287


>gi|110636839|ref|YP_677046.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110279520|gb|ABG57706.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1313

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F +  +  L  +   L ++  +L  +    I + G+TD       A+ N  LS  R  + 
Sbjct: 1210 FARGGTTLLESSYESLDQLYTLLTDNPTMRIELLGYTDNQ---GDAKLNVLLSEQRVAAI 1266

Query: 296  YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVEDR 341
               L+  G++E RI  K  G A+     A++     NRR++  +  +
Sbjct: 1267 KDYLVGKGIAETRIGGKGYGGANPIASNATEETRQLNRRVEFKIVSK 1313


>gi|4579742|dbj|BAA75215.1| OmpA-like outer membrane protein [Aggregatibacter
           actinomycetemcomitans]
          Length = 346

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      + + G+TD     + A  N +LS  RA + 
Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
              L+  GVS+  IS  +G         +               + +RR++I V
Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGNKCDVVKGRKALIACLADDRRVEIAV 342


>gi|315223632|ref|ZP_07865486.1| outer membrane protein A [Capnocytophaga ochracea F0287]
 gi|314946413|gb|EFS98408.1| outer membrane protein A [Capnocytophaga ochracea F0287]
          Length = 340

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +    +  V L KI   L  +    I+I+ HTD+   R     N  L+  +A S 
Sbjct: 232 FNYGRTNIRYDASVQLAKIVAFLEANPTVKIAIKVHTDS---RGEDGYNMNLTETQAQSI 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
           YQ L+  G+S +R++   G+   +L          S+  + AN+R++ ++ ++
Sbjct: 289 YQWLVSKGISPNRLTA-KGYGETQLVNGCENGVPCSEEEHQANKRVEFIIIEK 340


>gi|256820532|ref|YP_003141811.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582115|gb|ACU93250.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 340

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +    +  V L KI   L  +    I+I+ HTD+   R     N  L+  +A S 
Sbjct: 232 FNYGRTNIRYDASVQLAKIVAFLEANPTVKIAIKVHTDS---RGEDGYNMNLTETQAQSI 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
           YQ L+  G+S +R++   G+   +L          S+  + AN+R++ ++ ++
Sbjct: 289 YQWLVSKGISPNRLTA-KGYGETQLVNGCENGVPCSEEEHQANKRVEFIIIEK 340


>gi|288549451|ref|ZP_05967142.2| hypothetical protein ENTCAN_05522 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319143|gb|EFC58081.1| outer membrane protein A [Enterobacter cancerogenus ATCC 35316]
          Length = 358

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 287 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|310767218|gb|ADP12168.1| outer membrane protein A [Erwinia sp. Ejp617]
          Length = 355

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 227 KSDVLFTFNKANLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337
             RA S    L+  G+  ++IS   G         +  D +             RR++I 
Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISA-RGEGESNPVTGNTCDSVKGRQALIDCLSPDRRVEIQ 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|226197157|ref|ZP_03792734.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|225930536|gb|EEH26546.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
          Length = 254

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    +   ++  I  ++ +     + + G+TD          N RLS +RA + 
Sbjct: 147 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341
              ++  G+   +I+ +   A   + + ++            NRR++I ++ +
Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254


>gi|319776072|ref|YP_004138560.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3047]
 gi|319896881|ref|YP_004135076.1| outer membrane protein, ompa/motb [Haemophilus influenzae F3031]
 gi|329123235|ref|ZP_08251803.1| lipoprotein PlpD [Haemophilus aegyptius ATCC 11116]
 gi|317432385|emb|CBY80740.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3031]
 gi|317450663|emb|CBY86883.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3047]
 gi|327471444|gb|EGF16892.1| lipoprotein PlpD [Haemophilus aegyptius ATCC 11116]
          Length = 284

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   ++ K+   L  +    I I G+TD          N  LS  R
Sbjct: 148 GDFLFDFDKDTLSEKGKKIIDKVSYQLKSNGAKDIKIAGYTDRL---GTDSYNLELSQRR 204

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-------NRRIDIL 337
           A S    L+K GV   +I+ I    + ++K  +D P   A       NRR++I+
Sbjct: 205 ANSVKNHLVKDGV-TAQITAIGYGKNPQIKSCNDVPQGKALKDCLHPNRRVEII 257


>gi|270723293|ref|ZP_06223417.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270315265|gb|EFA27588.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 149

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   ++ K+   L  +    I I G+TD          N  LS  R
Sbjct: 33  GDFLFDFDKDTLSEKGKKIIDKVSYQLKSNGAKDIKIAGYTDRL---GTDSYNLELSQRR 89

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-------NRRIDIL 337
           A S    L+K GV   +I+ I    + ++K  +D P   A       NRR++I+
Sbjct: 90  ANSVKNHLVKDGV-TAQITAIGYGKNPQIKSCNDVPQGKALKDCLHPNRRVEII 142


>gi|328542545|ref|YP_004302654.1| Omp16 protein [polymorphum gilvum SL003B-26A1]
 gi|326412291|gb|ADZ69354.1| Omp16 protein [Polymorphum gilvum SL003B-26A1]
          Length = 161

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F +  S    +    L K  + L   +   I++ GH D    R     N  L   R
Sbjct: 52  DRVFFAEDQSTLSTQARATLDKQAQWLNLYSRYTITLEGHADE---RGTREYNIALGARR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343
           A SA   L+  GV+  RI  IS +   R       D   S NRR  + V +  G
Sbjct: 109 ANSARDYLVSRGVAASRIRTIS-YGKERPVAVCNDDSCWSQNRR-AVTVLNNAG 160


>gi|89890649|ref|ZP_01202159.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89517564|gb|EAS20221.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 663

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 226 ISIIDQRN-TPM-------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           I I+D  +  P+       FD       P+  + L KI   +    +  + IR HTD+  
Sbjct: 529 IPIVDCDDIAPLLNIKDIYFDFDRFNIRPDAALELSKILAFMELYPQTSVEIRSHTDSRA 588

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNS 329
             +   D   LS  RA S  + L++ G+S  R++   G+   +L          +   + 
Sbjct: 589 -PDAYNDV--LSEKRAQSTRKWLIEKGISASRLTA-KGYGERQLVNNCSNGVDCTPEEHQ 644

Query: 330 ANRRIDILV 338
            NRR + +V
Sbjct: 645 LNRRSEFIV 653


>gi|84687276|ref|ZP_01015156.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664709|gb|EAQ11193.1| OmpA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 222

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S++   +   +L +    +         + GHTD          N +L L RA + 
Sbjct: 76  FEFNSAVLDGQARQILARQASFIRQFPEVHFRVYGHTDKV---GSNAYNRQLGLRRAQAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323
                  G+S  R+  +  +   +  +A
Sbjct: 133 VNYFASQGISRSRVEAVVTYGETQPLVA 160


>gi|24212922|ref|NP_710403.1| OmpA family lipoprotein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24193591|gb|AAN47421.1| OmpA family lipoprotein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 195

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 27/181 (14%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            S  K+E    P  S ++  A   +         +       +AD++ + +       G+
Sbjct: 22  SSAEKKEESAAPEPSTQEQSAAANRN--------VDVNSPEAIADSLNEKLKDFRYPDGL 73

Query: 225 LISIIDQRNTPMFDKSSSIPLP-----ETIVVLQKIGEVLAHSTEV--ISIRGHTDAS-- 275
                     P F    +   P      +      I E L    +   + I GHTDA   
Sbjct: 74  T--------RPGFSYKKADVTPGDFSEWSKTNAPVIKEGLRKLPDSYALEITGHTDAIGP 125

Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
                  + N   S  RA +  Q L+K G+  +RI    G          D  ++ NRR+
Sbjct: 126 EQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIV-TKGAGSSEPVSGLDAKDAKNRRV 184

Query: 335 D 335
            
Sbjct: 185 T 185


>gi|261211953|ref|ZP_05926239.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC341]
 gi|260838561|gb|EEX65212.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC341]
          Length = 294

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E + +++++  + +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYIRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|255036435|ref|YP_003087056.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254949191|gb|ACT93891.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 464

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + + +     +  L  I           + ++GHTD +        N  LS  R  + 
Sbjct: 359 FSQGTEVLEDSALSDLDSIVSYFQKRQDLRLVLKGHTDNT---GSFEKNLELSNKRVETV 415

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              L+  G+  +RI   SG+   + +    ++    +NRR+++
Sbjct: 416 KAYLIGKGIIAERIEG-SGYGSAQPRQMNQTEATKKSNRRVEV 457


>gi|189220464|ref|YP_001941104.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
 gi|189187322|gb|ACD84507.1| Outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Methylacidiphilum infernorum V4]
          Length = 179

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         ++KI + +       I + GH D    R     N  L   RA + 
Sbjct: 76  FAFDSAAIPGSERGKIEKIADWMNQHPQLSILLAGHCDE---RGTEEYNRGLGERRAIAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            + L+  G+S ++I  IS +   R      ++   + NRR++
Sbjct: 133 REYLIGLGISAEKIHTIS-YGKDRPIAIGHTEADYAKNRRVE 173


>gi|58584412|ref|YP_197985.1| Outer membrane protein, pal-like [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418728|gb|AAW70743.1| Outer membrane protein, pal-like [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 159

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
           +     FD   S         L  + EVL       +++ GHTD    R     N  L  
Sbjct: 40  KEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDN---RGSYEYNVALGA 96

Query: 290 DRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMN-------SANRRID 335
            RA +A   ++  +   E+RI   S          +A D  N       + NRR++
Sbjct: 97  RRADAAKNFMVSCTPYLENRIKTAS-KGETEPLVYVADDSKNSKYEKEHAKNRRVE 151


>gi|218780987|ref|YP_002432305.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762371|gb|ACL04837.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 199

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   PE + +L+     L  +    + I+GH D    R     N  L   RA SA
Sbjct: 98  FAFDSSDLSPEAMAILKDKAFFLRLNPSKGVLIKGHCDE---RGSLEYNLALGDRRANSA 154

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
              L   G+   RI+ IS +          ++   + NRR +  +E
Sbjct: 155 KNFLTDLGIDARRINTIS-YGEEMPLDPASNEAAWAVNRRCEFALE 199


>gi|261342034|ref|ZP_05969892.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315690|gb|EFC54628.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 161

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FDK+ +   PE+   ++ +   LA +      + GHTD          N  LSL R
Sbjct: 53  DKILFDKNDARLRPESETQIRTMASRLAATGLNHARMDGHTDNY---GEESYNEALSLKR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +      K            G        ++      + NRR+ +++
Sbjct: 110 ANAVADAWAKGANIPRGNLTTQGLGKKYPVASNSTPQGRAENRRVAVVI 158


>gi|146306310|ref|YP_001186775.1| OmpA domain-containing protein [Pseudomonas mendocina ymp]
 gi|330502226|ref|YP_004379095.1| OmpA domain-containing protein [Pseudomonas mendocina NK-01]
 gi|145574511|gb|ABP84043.1| OmpA domain protein [Pseudomonas mendocina ymp]
 gi|328916512|gb|AEB57343.1| OmpA domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 166

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS    E +  L    + L  +   + + GH D    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKAEAMRALDVHAKDLKGNGARVVLEGHADE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           + L+  GVS  ++  +S +   R     +     + NRR+++
Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164


>gi|325285003|ref|YP_004260793.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324320457|gb|ADY27922.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 647

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +  + +Q++   L      VI +R HTDA   R     N  LS  RA   
Sbjct: 539 FDLDKSFIRIDGQITMQQVFAYLKEYPEVVIEVRSHTDA---RATNEYNLALSNRRAKET 595

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRID-ILVED 340
            + L+ +G++ +R+S   GF    L          S+  +  NRR + I+V++
Sbjct: 596 VKYLLDNGIAPERVSG-KGFGESELTNNCDSNSKCSEEEHQKNRRSEFIVVQN 647


>gi|91775931|ref|YP_545687.1| OmpA/MotB [Methylobacillus flagellatus KT]
 gi|91709918|gb|ABE49846.1| OmpA/MotB [Methylobacillus flagellatus KT]
          Length = 363

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F         E    L   + E +    EV  + I GHTD     +    N +LS  RA
Sbjct: 247 LFGFDKDNLKEEGKAKLNADVVEKMKAHPEVELVLITGHTD--RIGDETY-NQKLSERRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--IDILVED 340
            +  Q L+  G+ E R+  + G       +    +           NRR  ++I V+ 
Sbjct: 304 NTVKQYLISQGIEESRLHAV-GKGESEPVVECAGVRGKKAIECLQPNRRVVVEIEVQR 360


>gi|256424845|ref|YP_003125498.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256039753|gb|ACU63297.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 295

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH---TDASPFRNIARDNWRLSLDR 291
           +F+   +I +P ++  +++  ++L+        +RGH   T            + LS++R
Sbjct: 182 LFEPDRAILMPPSVYTVEQTAKLLSAYNGYSFEVRGHVNFTADLRVEPGTPP-FELSINR 240

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVEDRQ 342
           A    Q+L++ G+  D+I+   G  +  L      +      N R+++L+   +
Sbjct: 241 AKLVKQLLIQYGLPADKITA-RGMGNSELIYPYPQNLEEKLKNMRVEVLIYKPK 293


>gi|121601320|ref|YP_993883.1| OmpA family protein [Burkholderia mallei SAVP1]
 gi|167720677|ref|ZP_02403913.1| ompA family protein [Burkholderia pseudomallei DM98]
 gi|167739663|ref|ZP_02412437.1| ompA family protein [Burkholderia pseudomallei 14]
 gi|167816870|ref|ZP_02448550.1| ompA family protein [Burkholderia pseudomallei 91]
 gi|167846773|ref|ZP_02472281.1| ompA family protein [Burkholderia pseudomallei B7210]
 gi|167895360|ref|ZP_02482762.1| ompA family protein [Burkholderia pseudomallei 7894]
 gi|167903747|ref|ZP_02490952.1| ompA family protein [Burkholderia pseudomallei NCTC 13177]
 gi|254192034|ref|ZP_04898534.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|121230130|gb|ABM52648.1| OmpA family protein [Burkholderia mallei SAVP1]
 gi|157987856|gb|EDO95621.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 209

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 86  LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199


>gi|119483418|ref|ZP_01618832.1| outer membrane protein F [Lyngbya sp. PCC 8106]
 gi|119458185|gb|EAW39307.1| outer membrane protein F [Lyngbya sp. PCC 8106]
          Length = 296

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 90/253 (35%), Gaps = 13/253 (5%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           P  RS    ++  +       S      + N              L++ ++ +       
Sbjct: 52  PSSRSQAPLVETLLFRTSEPQSSQTSTPALNPTPLSPSPTTPQVQLTSGERQQLQTQLQE 111

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +    + ++  LE  +            ++++  + R+  L D     ++T +    
Sbjct: 112 LQQQLNTLIGRTAALETQLGISRPS---ETLEKRLQIVDRQLSLSDQTVPNAATPTPTRT 168

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVIS 267
               +         G+++++    +  +F  +++   P   V+L   I ++  +    + 
Sbjct: 169 TTSTQAQTRFRASQGLVVTL---PSDVLFATNTNSLRPGASVILDTLIADLENYKGASVR 225

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-- 325
           +  HTD +     A+DN  LSL +A +    L  +  SE     I G+   +  + +D  
Sbjct: 226 VAAHTDDT---GKAQDNLSLSLQQAEAIVAYLSTAIGSEYHWVAI-GYGEGQPTVENDST 281

Query: 326 PMNSANRRIDILV 338
                NRRI++ +
Sbjct: 282 TNKQLNRRIEVAI 294


>gi|94968752|ref|YP_590800.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550802|gb|ABF40726.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 286

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 22/243 (9%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
             TK      +G   Q+  +  L   +            K      +    DL  ++ ++
Sbjct: 56  DSTKVQSPKGLGLRKQQMSWASLIPGLKVSVKGALDAGGKFIAEEITFSKDDLQTASMIQ 115

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
             +   E      +   K    + K+ +    ++I       V         F+  +  +
Sbjct: 116 AGLTPTEQK----VDANKQSIGENKENIDTNKQQIDEN-QQAVNKRFDDLTDFDVKKEAV 170

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +           F    S         L  +       T  +I ++G  D++     A  
Sbjct: 171 V----------YFVSGKSSLAAADKKALTDLAAEATKLTGYIIEVKGFADST---GNAAM 217

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           N  LS DRA++    LM+   V    I             +++       NRR+++ V  
Sbjct: 218 NQTLSKDRAFAVVNFLMQDCSVPPRHIVSPGAMGISNPVASNETATGRKENRRVEVKVMV 277

Query: 341 RQG 343
            +G
Sbjct: 278 NKG 280


>gi|146311126|ref|YP_001176200.1| outer membrane protein A [Enterobacter sp. 638]
 gi|145318002|gb|ABP60149.1| OmpA domain protein transmembrane region-containing protein
           [Enterobacter sp. 638]
          Length = 351

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 223 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +      P  +       +RR++I 
Sbjct: 280 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGATCDNVKPRAALIDCLAPDRRVEIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|90412812|ref|ZP_01220812.1| hypothetical protein P3TCK_26075 [Photobacterium profundum 3TCK]
 gi|90326171|gb|EAS42598.1| hypothetical protein P3TCK_26075 [Photobacterium profundum 3TCK]
          Length = 319

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +              L ++ + L  + E    I G TD++    I   N ++S  RA + 
Sbjct: 220 YQTGQVDVNDYGRYNLNEVAQTLQANPELTAEIIGRTDSTGTAAI---NAKVSEARANAV 276

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            Q L+ +GV   R++ ++  A           +   R ++++++
Sbjct: 277 SQYLIDNGVDASRLT-VTSVADQNPLTDDSGKSLIERSVEVVIK 319


>gi|301156335|emb|CBW15806.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 285

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD       P    V+  +   L  +    + + G+TD          N  LS  R
Sbjct: 148 GDFLFDFDKDTLTPRGKEVVDNVAAQLKETGAKEVKVAGYTDRL---GSDAYNLDLSQRR 204

Query: 292 AYSAYQVLMKSGVSEDRISKISGFA-----------HHRLKIASDPMNSANRRIDI 336
           A      L++ GV+ + I+ + G+             H  K   D +   NRR++I
Sbjct: 205 ANRVKARLIEDGVTSE-ITAV-GYGKVPQVKACNGYKHASKAEKDCLRP-NRRVEI 257


>gi|241667271|ref|ZP_04754849.1| OmpA family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254875822|ref|ZP_05248532.1| OmpA family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841843|gb|EET20257.1| OmpA family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 418

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH---------TDASPFRNIARDNWR 286
           FD  S     +   +L K+   L  +     +IRG+         TD +    +   N R
Sbjct: 71  FDADSYNLNDQAKQILNKLYAYLKLTDTTTFTIRGYAGKVESKLLTDKN---ILTEYNIR 127

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LS +RA S  + L++ G+ ++    I    +      +D     + N+R++I ++ R
Sbjct: 128 LSKNRAESVEEYLVRRGLDKNNGIIIKALGYQDPIAPNDTSSNRAINQRVEITLKSR 184


>gi|167626696|ref|YP_001677196.1| OmpA family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596697|gb|ABZ86695.1| OmpA family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 418

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH---------TDASPFRNIARDNWR 286
           FD  S     +   +L K+   L  +     +IRG+         TD +    +   N R
Sbjct: 71  FDADSYNLNDQAKQILNKLYAYLKLTDTTTFTIRGYAGKVESKLLTDKN---ILTEYNIR 127

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           LS +RA S  + L++ G+ ++    I    +      +D     + N+R++I ++ R
Sbjct: 128 LSKNRAESVEEYLVRRGLDKNNGIIIKALGYQDPIAPNDTSSNRAINQRVEITLKSR 184


>gi|24374850|ref|NP_718893.1| OmpA family protein [Shewanella oneidensis MR-1]
 gi|24349542|gb|AAN56337.1|AE015771_7 OmpA family protein [Shewanella oneidensis MR-1]
          Length = 196

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318
           A++   +++ GHTD          N++LSL RA +  ++L++  G + +R + + G    
Sbjct: 116 ANTETKLTLVGHTD---IVGTPEFNYQLSLQRAQNVKRILVEDYGFNPNRFT-VVGKGIS 171

Query: 319 RLKIASDPMNSA--NRRIDILVED 340
                +        NRR+  +V +
Sbjct: 172 EPVADNRSSEGRGLNRRVQFIVNN 195


>gi|315126010|ref|YP_004068013.1| sodium-type flagellar protein MotY precursor [Pseudoalteromonas sp.
           SM9913]
 gi|315014524|gb|ADT67862.1| putative sodium-type flagellar protein MotY precursor
           [Pseudoalteromonas sp. SM9913]
          Length = 290

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPE-TIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRA 292
           F         E  +  L+ +   ++     +S   + GHTD +        N  LS +RA
Sbjct: 184 FASGQRTVTAEKDLKFLKDLVHYIS-LDNRVSKVLVDGHTDNT---GSPLSNRLLSKERA 239

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRI 334
                 L++ G+ +D + ++         I +     S+NRR+
Sbjct: 240 DDVAARLIEFGLPKD-MLEVRAHGQRYPIIKNSKQGASSNRRV 281


>gi|254975524|ref|ZP_05271996.1| hypothetical protein CdifQC_09444 [Clostridium difficile QCD-66c26]
 gi|255092912|ref|ZP_05322390.1| hypothetical protein CdifC_09699 [Clostridium difficile CIP 107932]
 gi|255314653|ref|ZP_05356236.1| hypothetical protein CdifQCD-7_09900 [Clostridium difficile
           QCD-76w55]
 gi|255517327|ref|ZP_05385003.1| hypothetical protein CdifQCD-_09486 [Clostridium difficile
           QCD-97b34]
 gi|255650433|ref|ZP_05397335.1| hypothetical protein CdifQCD_09639 [Clostridium difficile
           QCD-37x79]
 gi|260683545|ref|YP_003214830.1| hypothetical protein CD196_1809 [Clostridium difficile CD196]
 gi|260687205|ref|YP_003218339.1| hypothetical protein CDR20291_1852 [Clostridium difficile R20291]
 gi|306520411|ref|ZP_07406758.1| hypothetical protein CdifQ_11096 [Clostridium difficile QCD-32g58]
 gi|260209708|emb|CBA63457.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213222|emb|CBE04721.1| putative membrane protein [Clostridium difficile R20291]
          Length = 210

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249
           S ++SG V  ++ K V    E T     I + +D+ N         MFD  S +  PE  
Sbjct: 40  SESISGSVEQDLAKNVNASVEETFKKSKIPVKVDKSNGQVTFGEKTMFDVDSDVLKPEAK 99

Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            +L+         +     + IS   I GHTD          N  LS  RAYS  + ++ 
Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156

Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336
             + +    D+++K I      + ++  +  NS N    RR+++
Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200


>gi|58422899|gb|AAW73249.1| OmpA [Serratia sp. MF 426]
          Length = 228

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F+ + +   PE    L ++   L+        + + G TDA      A+ N RLS  RA
Sbjct: 122 LFNFNKATLKPEGQHALDQLYTQLSSLDPKDGSVVVLGFTDAV---GSAQYNQRLSEQRA 178

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            S    L+  G+  D+IS   G          
Sbjct: 179 QSVVDYLVSKGIPSDKISA-RGMGKSNPVTGD 209


>gi|330977950|gb|EGH77853.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 378

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 274 RALNRRVEILMTPQ 287


>gi|119944462|ref|YP_942142.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37]
 gi|119863066|gb|ABM02543.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37]
          Length = 331

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282
           ++I I        F   S    P+ I  L+ I + L    E  + + GHTD++       
Sbjct: 217 LIIEIP-------FAFDSVKLAPKYIDQLKPIAQQLIKYPEAELIVIGHTDST---GPES 266

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            N +LS  RA      L     ++++RI + SG      K ++      + NRR+ + 
Sbjct: 267 YNQQLSERRAALVADYLATHFAIAKNRIKE-SGRGELAPKASNATKDGRALNRRVSVF 323


>gi|89889605|ref|ZP_01201116.1| insulin-like peptidase, M16 family [Flavobacteria bacterium BBFL7]
 gi|89517878|gb|EAS20534.1| insulin-like peptidase, M16 family [Flavobacteria bacterium BBFL7]
          Length = 573

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 26/247 (10%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
           +DE I K   +L      QK Q Q     +   S  +       +          + K  
Sbjct: 346 MDEEIVKLQTELISEREYQKLQNQFETRFVSSNSRVEGIAASLATYNMLKGDTGLINKEL 405

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D+ +SI +E+   +      K L   ++  L  LA            +        +   
Sbjct: 406 DIYRSITREDIKRV----ANKYLKPNQRLELDYLAGS-----EPTEEEVAAAADEVKVVD 456

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNI 280
             + I      N   FD   +         L +I   ++ +S+  I    +TD    R  
Sbjct: 457 NKLQI------NRIYFDNDKAAITTSAAKELDRIVAMMMKNSSMEILAETYTDT---RGS 507

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRRI 334
              N  LS  RA +    L+  G++ +R+  + G       +       +D     +RR 
Sbjct: 508 DSYNKTLSQKRADAVRGYLISKGIAANRVKAV-GRGEDNPVVDCESKTCTDEEYEQSRRT 566

Query: 335 DILVEDR 341
           +  +  +
Sbjct: 567 EFTITKK 573


>gi|83941418|ref|ZP_00953880.1| OmpA domain protein [Sulfitobacter sp. EE-36]
 gi|83847238|gb|EAP85113.1| OmpA domain protein [Sulfitobacter sp. EE-36]
          Length = 632

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+      +  + +I E+L       + ++G+TD+         N  LS  RA S 
Sbjct: 498 FEPGSATIDASALGTMDQIAEILQDCRDIALEVQGYTDSQ---GREEMNLALSQSRAQSV 554

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
              L    V         G+       ++D      ANRRI+  + +
Sbjct: 555 LNELRARRVITGSFVA-KGYGEESPVASNDTEEGREANRRIEFKLIN 600


>gi|317404170|gb|EFV84613.1| OmpA family domain-containing protein [Achromobacter xylosoxidans
           C54]
          Length = 312

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    E+   L ++G++L  + +  + + GHTD          N  LS  RA + 
Sbjct: 219 FDTDKAEVKAESKAALDEMGKLLNANPKLKVYVVGHTDNQ---GTLAGNLELSQKRADAV 275

Query: 296 YQVLMKS 302
            + L   
Sbjct: 276 VKALEAG 282


>gi|294663979|ref|ZP_06729397.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606252|gb|EFF49485.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 144

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278
           T  G LI++ D     +FD   S    +   VL  +G  L   T   + +RGHTDA   +
Sbjct: 24  TPCGYLITLND---RILFDFDKSDIRADAARVLDTLGAALTKVTAKDMQVRGHTDA---K 77

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331
                N  LS  RA +             + +   G    +    +      +P     N
Sbjct: 78  GSDDYNQALSERRANAVLA--ALRARGAAQSANAKGDGESQPVAPNTVNGQDNPGGRQLN 135

Query: 332 RRIDILVED 340
           RR++I +  
Sbjct: 136 RRVEIFLRT 144


>gi|253699085|ref|YP_003020274.1| OmpA/MotB domain protein [Geobacter sp. M21]
 gi|251773935|gb|ACT16516.1| OmpA/MotB domain protein [Geobacter sp. M21]
          Length = 1709

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD----ASPFRNIARDNWRLSLDR 291
           F    +    E + +L+ + E +       +   GH D    + P +    DN  LS +R
Sbjct: 109 FRTGDAEISSEYLELLRGVLEKMRGRDNVRLHFVGHADTQQLSGPLKEKFGDNTGLSRER 168

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  +   ++           G    +    +  +   + NRR+++ V
Sbjct: 169 AGTTAEYCQRALALPPEAISYQGLGDAKPVAPNSTEEGRALNRRVEVEV 217


>gi|209886401|ref|YP_002290258.1| OmpA/MotB domain protein [Oligotropha carboxidovorans OM5]
 gi|209874597|gb|ACI94393.1| OmpA/MotB domain protein [Oligotropha carboxidovorans OM5]
          Length = 160

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +    + I  L+K  + L        +I GH D    R     N  L   R
Sbjct: 52  DRVFFESDQTELSQQAINTLEKQAQWLQQYPRYTFTIEGHADE---RGTREYNIALGAKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G++  R+  IS +   R     + ++  S NRR
Sbjct: 109 AQSVRNFLASRGINPSRMRTIS-YGKERPVAVCNDISCWSQNRR 151


>gi|167581046|ref|ZP_02373920.1| OmpA family protein [Burkholderia thailandensis TXDOH]
          Length = 200

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 77  LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 133

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       I  +     N           RR+++ V   Q
Sbjct: 134 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 190


>gi|302187242|ref|ZP_07263915.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 386

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 274 RALNRRVEILMTPQ 287


>gi|299773247|gb|ADJ38698.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 369

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 249 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 305

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D + +          +RR++I V+  
Sbjct: 306 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDALKARKSLIVCLAPDRRVEIQVQGS 364

Query: 342 Q 342
           +
Sbjct: 365 K 365


>gi|331010144|gb|EGH90200.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 381

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +               +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +    + + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|323493119|ref|ZP_08098250.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           brasiliensis LMG 20546]
 gi|323312590|gb|EGA65723.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           brasiliensis LMG 20546]
          Length = 304

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+        E +  L  +   L        I + GHTD+         N  LS  RA  
Sbjct: 180 FNIGQKSLSSEQLTTLAALNSYLQADPSVSKILVDGHTDS---SGARASNLALSRVRAEL 236

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
             + L   GVS+  + ++           +      + NRR+ +
Sbjct: 237 VSKQLHHLGVSQS-MIEVRAHGSRYPIATNTTTAGKAKNRRVTL 279


>gi|315180476|gb|ADT87390.1| hypothetical protein vfu_A02253 [Vibrio furnissii NCTC 11218]
          Length = 271

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L+ I E++    ++  + I GH+D+         N  +S  RA  
Sbjct: 167 FQSGVLALTQNQRSQLEAISELVLFDPKIKTVRITGHSDS---HGDTVVNLSVSRRRADD 223

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
               +M +GV  + + +I G          A++    ANRR++I +  R
Sbjct: 224 VAYWMMMAGVPTE-MMEIRGQGGRYPVGNNATEEGRLANRRVEIELVRR 271


>gi|298488773|ref|ZP_07006801.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156691|gb|EFH97783.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 376

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +               +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +    + + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|149184887|ref|ZP_01863204.1| hypothetical protein ED21_17577 [Erythrobacter sp. SD-21]
 gi|148830998|gb|EDL49432.1| hypothetical protein ED21_17577 [Erythrobacter sp. SD-21]
          Length = 242

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 44/168 (26%)

Query: 210 NIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---- 259
            I+  +       G+ + I      +   +  +FDK            + K+   +    
Sbjct: 58  EILNDLQQSLKDRGLQVEIDTKTGVLRLPDDVLFDKGQWELTERGQAAISKVASAMVEVL 117

Query: 260 --------------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS--- 302
                          H  + + + GHTD+    +   +N+ LS+ RA + + +L ++   
Sbjct: 118 PCYTASDLCEGERSPHLIDAVFVEGHTDSD-VMSGGMNNYGLSVRRAETTFTMLQRNQPA 176

Query: 303 ------------GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
                       G +   I  +SG+   R     D   +   NRRID+
Sbjct: 177 LRGFLNRPAGEDGSAP--ILSLSGYGPDRPVDRGDSEEAKKRNRRIDL 222


>gi|186472020|ref|YP_001859362.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184194352|gb|ACC72316.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 371

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD  S+    E    +  +   L      +V+++ G+TD          N  LS  RA 
Sbjct: 206 LFDFDSAKLKAEGFEAVDVLASNLKRVKAIDVVTVIGYTDRF---GSVAHNRDLSRRRAQ 262

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPM----NSANRRIDILV 338
           +    L + GV       + G       +       P      + NRR++I V
Sbjct: 263 AVADALKQRGVDPGHFD-VRGAGSTAPVVTCPGPKKPAVIECLAPNRRVEIRV 314


>gi|71066157|ref|YP_264884.1| outer membrane protein OprF [Psychrobacter arcticus 273-4]
 gi|71039142|gb|AAZ19450.1| outer membrane protein OprF, OmpA/OmpF family [Psychrobacter
           arcticus 273-4]
          Length = 240

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           +   +FD  ++    +   VL+ +   +    ++ +++ GHTD    +     + +LS  
Sbjct: 129 QFNVLFDFDNAGIKSKHSAVLRGMTNFIQAYPQIAVTLEGHTDN---KGPESYHLKLSES 185

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
           R      +L+   GV   R+S + G+       +++       NRR+  +V  R
Sbjct: 186 RVNMVKNILVDKYGVDAMRLSTV-GYGETMPVDSNNTEKGRQNNRRVVAIVSQR 238


>gi|320325666|gb|EFW81728.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 381

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 103/303 (33%), Gaps = 23/303 (7%)

Query: 42  TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           ++++A  + +     T      A   ++  FG    +A  G   +   P  +       +
Sbjct: 6   SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSLAPAPVAKAA 65

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
                     +             + +     +++    +    +L   SE         
Sbjct: 66  AAPAAPAAGAENSAPWYWPFGSKDKAQAKPDAVADKTADKPAAPALVAKSETDSKWWWPF 125

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E   ++ +   +P     +    + + RL+                  +K   F+  R
Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280
              L++I    ++       ++ LP T+  + ++ +V+       + I GH D       
Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
              N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++IL+
Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285

Query: 339 EDR 341
             +
Sbjct: 286 TPQ 288


>gi|37498966|gb|AAQ86765.2| hemagglutinin antigen [Avibacterium paragallinarum]
 gi|48249488|gb|AAT40990.1| hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 345

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342


>gi|312142545|ref|YP_003993991.1| OmpA/MotB domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311903196|gb|ADQ13637.1| OmpA/MotB domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 352

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS  L ++  VL +I ++L  + E  + + GHTD     ++   N  LS  RA S 
Sbjct: 248 FEFDSSQILADSHDVLAEIAKLLLENPELRLYVVGHTDD--LGSLQY-NRNLSERRAESV 304

Query: 296 YQVLMKS-GVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDIL 337
              L+ +  ++ DR IS   G         ++   + NRR+ ++
Sbjct: 305 VDFLIDNHDIASDRLISAGVGPLAPESTNKTESGRALNRRVVLV 348


>gi|157736533|ref|YP_001489216.1| periplasmic protein [Arcobacter butzleri RM4018]
 gi|157698387|gb|ABV66547.1| conserved hypothetical protein, probable periplasmic protein
           [Arcobacter butzleri RM4018]
          Length = 329

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 130/335 (38%), Gaps = 55/335 (16%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD M  L   F+ + +I A        + +Y                  Q+  E 
Sbjct: 13  W-ISYADLMAGL--LFVFILVIGAI-------VIKY---------------VYAQSSLES 47

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S + K  L  +   TKN  +      ++ K    L+ +      +   E+  NS     +
Sbjct: 48  SEEAKSQLFYELAKTKNLYESTKDELDKAKNQINLKLSEIEKLKALLLEYELNSKDEKDK 107

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ--DLAKKISSTLSGL---- 206
             K   + ++    I+ +++       K  +L    +K ++  D+AK    TL+G+    
Sbjct: 108 SEKLALELSEKTNLISLKDDELKLLADKLLVLTQVHQKMVEEFDIAKLKIKTLTGIKLNV 167

Query: 207 ---VADNIVKGVLFETTRTGILIS---IIDQRNTPMFDKS----SSIPLPETIVVLQKIG 256
              + + + K +  +     I  S   + DQ +  + ++S    S++       +L    
Sbjct: 168 ISKLREKLGKSINIDEKSGAIKFSSNILFDQNSYILKEESKKELSTVLKQYLNTLLDD-- 225

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI---- 312
           + +    E I+I GHT++         N +LS  RA +  Q L +S + + ++       
Sbjct: 226 KEIKKYIESITIEGHTNSD---GTYLSNLQLSQQRALAVMQFLYESNIIDKKLLGTYVNS 282

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI--LVEDRQG 343
           SG +   L +    +  +++ RRI+I   +++ + 
Sbjct: 283 SGRSSSDLILKDGVEDKDAS-RRIEIKFTIKNEEA 316


>gi|260890422|ref|ZP_05901685.1| fibronectin-binding protein [Leptotrichia hofstadii F0254]
 gi|260860042|gb|EEX74542.1| fibronectin-binding protein [Leptotrichia hofstadii F0254]
          Length = 149

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   ++        +++I   L     +  I + GHTD++      + N +LS  RA +
Sbjct: 36  FNIDGNVLNESEASTIREIVNDLNKYGKSGTIDVIGHTDST---GSQKHNLKLSETRAKN 92

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340
             +++ + G+   R S  KI G   +      D +     NRR++IL+ +
Sbjct: 93  FARLMREFGLD-KRFSFGKIKGGGANSPVDTDDRVEGRYNNRRVEILLNN 141


>gi|260219497|emb|CBA26342.1| Peptidoglycan-associated lipoprotein [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 167

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   E    L+   + L A  +  +SI GHTD    R     N  L   RA + 
Sbjct: 66  FDYDSFVIRSEFQATLEAHAKYLKADKSRKVSIEGHTDE---RGGREYNLALGQKRAEAV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335
            + L   GVS+ ++  IS +   +  +  +   +   NRR +
Sbjct: 123 RKALQLQGVSDAQMEAIS-YGKEKPAVLGNSEAALEKNRRAE 163


>gi|48249486|gb|AAT40989.1| hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 345

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342


>gi|313191694|emb|CBW30515.1| putative outer membrane protein A [Bordetella petrii]
 gi|313191698|emb|CBW30516.1| putative outer membrane protein A [Bordetella petrii]
 gi|313191702|emb|CBW30517.1| putative outer membrane protein A [Bordetella petrii]
          Length = 164

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +  +       I  GHTD+      A  N +LS  RA S
Sbjct: 87  FFDFDKSTLKPEGRQLLDQVAQQASGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143

Query: 295 AYQVLMKSGVSEDRIS 310
               L+  GV  +RI 
Sbjct: 144 VKSYLVSKGVDPNRIY 159


>gi|209519335|ref|ZP_03268134.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209500219|gb|EEA00276.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 215

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L ++   +      + +  GHTD     + A ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPAGKDRLSELASKIQGINLEVVVATGHTD--RIGSDAYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  GV  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAFLVSKGVEANRIY-TEGKGRRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|320327051|gb|EFW83065.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330876989|gb|EGH11138.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 381

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 159 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 218

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 219 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 274

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 275 RALNRRVEILMTPQ 288


>gi|150024426|ref|YP_001295252.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|150025241|ref|YP_001296067.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770967|emb|CAL42434.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771782|emb|CAL43256.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 644

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S+   +  V L KI  VL  +    I IR HTD+            LS  RA S 
Sbjct: 536 FDLNKSVIRKDASVELAKILTVLNLNPTIKIDIRSHTDSRQTAAYNMS---LSDRRAKST 592

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            + L++ G+S DR++   G+   +L          +   +  NRR + ++
Sbjct: 593 IEWLVQKGISPDRLTG-RGYGESQLVNECSDGVNCTGEQHQLNRRSEFII 641


>gi|145633105|ref|ZP_01788837.1| Outer membrane protein P5 [Haemophilus influenzae 3655]
 gi|144986331|gb|EDJ92910.1| Outer membrane protein P5 [Haemophilus influenzae 3655]
          Length = 359

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355


>gi|148555193|ref|YP_001262775.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1]
 gi|148500383|gb|ABQ68637.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1]
          Length = 373

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    E   +L       A + +  + + GH D        + N  LS  RA S
Sbjct: 269 FFDWDKSDITAEAASILDNAANAYATTGQARVQLAGHADK---SGSDQYNVGLSQRRADS 325

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L   GV +  I+    F   R  + +        NRR++I
Sbjct: 326 VKAYLAGKGVPDSAIT-TEAFGESRPLVETADGVREPQNRRVEI 368


>gi|163756036|ref|ZP_02163152.1| OmpA/MotB [Kordia algicida OT-1]
 gi|161323910|gb|EDP95243.1| OmpA/MotB [Kordia algicida OT-1]
          Length = 277

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 17/178 (9%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232
               +  L  +  K+ + +  K    +S   + N  K  + E      ++ I + R    
Sbjct: 98  EQEAKGELPTETTKQNERIGVKKHRKVSISASKNDHKPKVVERKENIYVVPINELRVGNT 157

Query: 233 ---NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT-----DASPFRNIARD 283
                  F       +  +   L+K+   L  +    I ++GH      D S   N    
Sbjct: 158 YALGKINFKTGRVTLIKSSKKELEKLVRFLKKNRNIHIEVQGHVCCGGDDDSDALNSETG 217

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILV 338
              LS+DRA   Y+ L+  G+S++R++   G+A               SANRR++I +
Sbjct: 218 TETLSVDRARFIYKYLISRGISKERLT-YKGYAFKAPLRFPEKGSRDRSANRRVEIEI 274


>gi|153831593|ref|ZP_01984260.1| OmpA family protein [Vibrio harveyi HY01]
 gi|148872103|gb|EDL70920.1| OmpA family protein [Vibrio harveyi HY01]
          Length = 350

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   ++       I + GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLSRSQQSTLAALYSYISVDDRVTKILVDGHTDNV---GSQLANLNVSRQRAEQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
             + L++ GV    + ++          +++     + NRR+ +
Sbjct: 269 VAEALVQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311


>gi|66047081|ref|YP_236922.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63257788|gb|AAY38884.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 386

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 218 GHADT---SGPTDANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 274 RALNRRVEILMTPQ 287


>gi|251793057|ref|YP_003007783.1| peptidoglycan-associated lipoprotein [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534450|gb|ACS97696.1| peptidoglycan-associated lipoprotein [Aggregatibacter aphrophilus
           NJ8700]
          Length = 154

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           T  G  +  +  + NT +F         E + +L      L  +    + + GHTD    
Sbjct: 36  TFGGYSVQDLQQRYNTVLFGFDKYDIQGEYVQILDAHAAYLNATPATSVRVEGHTDE--- 92

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333
           R     N  L   RA++    L   GV   +IS +S +   +       +   S NRR
Sbjct: 93  RGTPEYNMALGERRAHAVQNYLTSKGVQAGQISTVS-YGEEKPAELGHDEAAYSKNRR 149


>gi|229844879|ref|ZP_04465017.1| outer membrane protein P5 [Haemophilus influenzae 6P18H1]
 gi|229812260|gb|EEP47951.1| outer membrane protein P5 [Haemophilus influenzae 6P18H1]
          Length = 355

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 242 FAFGKANLKPQAQATLNSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 298

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 299 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 351


>gi|114766590|ref|ZP_01445546.1| OmpA family protein [Pelagibaca bermudensis HTCC2601]
 gi|114541206|gb|EAU44258.1| OmpA family protein [Roseovarius sp. HTCC2601]
          Length = 194

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F        P+    L++     + +     I GHTDA    +I   N RLS +RA +  
Sbjct: 97  FATDKYYISPKGKARLEEFFN--SATAFGFIIAGHTDAR--ASIEY-NRRLSYNRANAVA 151

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            V   +G    RI  + G+        +  +   + NRR++IL
Sbjct: 152 SVARGTG---ARIIDVRGYGEEYPVATNRTVEGMAKNRRVEIL 191


>gi|322832273|ref|YP_004212300.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
 gi|321167474|gb|ADW73173.1| OmpA/MotB domain protein [Rahnella sp. Y9602]
          Length = 358

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G+TD     +    N +LS
Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYSQLSSIDPKDGSVIVLGYTD--RIGSEQY-NQKLS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  ++IS         ++G           L     P     RR+
Sbjct: 287 EQRAQSVVDYLVSKGIPANKISAQGQGKSNPVTGSTCDSVKGRAALIDCLAPD----RRV 342

Query: 335 DILVE 339
           +I V+
Sbjct: 343 EIEVK 347


>gi|262066137|ref|ZP_06025749.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380232|gb|EFE87750.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 93

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
            +L  + + +  +   +++ GHTD+    +    N  LS  RA +    L++ G++E+RI
Sbjct: 3   EMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIGLSRRRAEAVKAKLIEFGLAEERI 59

Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341
             I           ++       NRR++  +  R
Sbjct: 60  VGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 93


>gi|156976199|ref|YP_001447105.1| hypothetical protein VIBHAR_04970 [Vibrio harveyi ATCC BAA-1116]
 gi|156527793|gb|ABU72878.1| hypothetical protein VIBHAR_04970 [Vibrio harveyi ATCC BAA-1116]
          Length = 350

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   ++       I + GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLSRSQQSTLAALYSYISVDDRVTKILVDGHTDNV---GSQLANLNVSRQRAEQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
             + L++ GV    + ++          +++     + NRR+ +
Sbjct: 269 VAEALIQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311


>gi|83854895|ref|ZP_00948425.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83842738|gb|EAP81905.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 632

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+     T+  + +I E+L       + ++G+TD+         N  LS  RA S 
Sbjct: 498 FEPGSATIDASTLGTMDQIAEILQDCRDIALEVQGYTDSQ---GREEMNLALSQSRAQSV 554

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
              L    V         G+       ++D      ANRRI+  + +
Sbjct: 555 LNELRARRVITGSFVA-KGYGEESPVASNDTEEGREANRRIEFKLIN 600


>gi|261855938|ref|YP_003263221.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261836407|gb|ACX96174.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 207

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD       P     L K+   +        I + G+TD+       + N  LS  RA +
Sbjct: 100 FDFDKYNLKPAGKEALDKLISEMGDMNSIAKIKVVGYTDSI---GTEKYNIGLSERRANT 156

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334
             + L    +  D+I ++  G A       +    + NRR+
Sbjct: 157 VAKYLTAHNIPADKIETQGMGEADPVASNKTKEGRAKNRRV 197


>gi|19881377|gb|AAM00931.1|AF491823_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341


>gi|293390286|ref|ZP_06634620.1| OmpA-like outer membrane protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950820|gb|EFE00939.1| OmpA-like outer membrane protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 346

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      + + G+TD     + A  N +LS  RA + 
Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
              L+  GVS+  IS  +G         S  D +            +RR++I V
Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGSKCDAVKGRKALIACLADDRRVEIAV 342


>gi|157962526|ref|YP_001502560.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847526|gb|ABV88025.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 324

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   +  +      + VL   T   I +  +  R   +F   SS    +T  + + I   
Sbjct: 186 VRPAIDPMHKPLDKQQVLITPT---INVQSVSIRGNSVFGFDSSKLT-DTSALDEVIKSA 241

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LA     IS+  +TD+       R N  L+  RA +     +  GV+  RI  I      
Sbjct: 242 LASKNASISVTAYTDSL---GAERYNLALAKRRAEATQAYFITHGVAPSRIH-IDWKGEE 297

Query: 319 RLKIASDP--MNSANRRIDILV 338
               ++      + NRR++I +
Sbjct: 298 NPVSSNMTAKGRALNRRVEIEI 319


>gi|126668392|ref|ZP_01739349.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
 gi|126627101|gb|EAZ97741.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter sp. ELB17]
          Length = 189

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  ++    E+  VL      L+ +      + GH D    R  +  N  L   RA + 
Sbjct: 88  FDFDTAEISAESRDVLVAHARYLSANPSMNARLEGHADD---RGTSEYNLALGERRANAV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337
            + L+ +G S  ++  IS +   +  +   SD   S NRR++++
Sbjct: 145 QRFLIVNGASRGQLETIS-YGEEKPAVQGMSDSARSQNRRVELI 187


>gi|86358030|ref|YP_469922.1| OmpA family membrane protein [Rhizobium etli CFN 42]
 gi|86282132|gb|ABC91195.1| putative outer membrane protein, OmpA family [Rhizobium etli CFN
           42]
          Length = 738

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + +        +E   I GHTDA       + N  LS  R
Sbjct: 623 FATGSAEIPMTQARTLRKVADAINQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 679

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 680 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTPGPEQENRRVTI 724


>gi|300776237|ref|ZP_07086095.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910]
 gi|300501747|gb|EFK32887.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910]
          Length = 508

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           + +        F+ + +   PE+   L     ++  +     + GHTD    +  A  N 
Sbjct: 364 VEVEKTLKDIYFNFNKATIRPESNEKLDLAASIIKENGGNYLLTGHTD---IKGNAAYNL 420

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRIDI 336
           RLS +RA +    L   G++++ + S+  G A       ASD    A+R++ +
Sbjct: 421 RLSKERAAAVVGALESRGINKNVLKSRGVGSAEATIPASASDAERMADRKVTV 473


>gi|148555047|ref|YP_001262629.1| peptidoglycan-associated lipoprotein [Sphingomonas wittichii RW1]
 gi|148500237|gb|ABQ68491.1| Peptidoglycan-associated lipoprotein [Sphingomonas wittichii RW1]
          Length = 175

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +     E   +L +    LA    V +++ GH D    R     N  L   RA +A
Sbjct: 73  FATDAYDVDAEDQAILTRQASWLAKYPNVSVTLEGHCDE---RGTREYNLALGERRANAA 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDIL 337
              L+ +GVS  RIS IS      +   SD    + NRR + I+
Sbjct: 130 KNFLVSAGVSASRISVISYGKERPVATGSDEAAWAQNRRAVTIV 173


>gi|320577120|gb|ADW54069.1| outer membrane protein A [Sodalis glossinidius]
          Length = 290

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+   +   PE    L ++   L+        + + G+TD          N +LS
Sbjct: 182 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 238

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +RA S    L+  G+  D+IS   G         +
Sbjct: 239 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGN 273


>gi|315635693|ref|ZP_07890956.1| chemotaxis protein MotB [Arcobacter butzleri JV22]
 gi|315479990|gb|EFU70660.1| chemotaxis protein MotB [Arcobacter butzleri JV22]
          Length = 329

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 130/335 (38%), Gaps = 55/335 (16%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD M  L   F+ + +I A        + +Y                  Q+  E 
Sbjct: 13  W-ISYADLMAGL--LFVFILVIGAI-------VIKY---------------VYAQSSLES 47

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S + K  L  +   TKN  +      ++ K    L+ +      +   E+  NS     +
Sbjct: 48  SEEAKSQLFYELAKTKNLYESTKDELDKAKNQINLKLSEIEKLKALLLEYELNSKDEKDK 107

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ--DLAKKISSTLSGL---- 206
             K   + ++    I+ +++       K  +L    +K ++  D+AK    TL+G+    
Sbjct: 108 NEKLALELSEKTNLISLKDDELKLLADKLLVLTQVHQKMVEEFDIAKLKIKTLTGIKLNV 167

Query: 207 ---VADNIVKGVLFETTRTGILIS---IIDQRNTPMFDKS----SSIPLPETIVVLQKIG 256
              + + + K +  +     I  S   + DQ +  + ++S    S++       +L    
Sbjct: 168 ISKLREKLGKSINIDEKSGAIKFSSNILFDQNSYILKEESKKELSTVLKQYLNTLLDD-- 225

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI---- 312
           + +    E I+I GHT++         N +LS  RA +  Q L +S + + ++       
Sbjct: 226 KEIKKYIESITIEGHTNSD---GTYLSNLQLSQQRALAVMQFLYESNIIDKKLLGTYVNS 282

Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI--LVEDRQG 343
           SG +   L +    +  +++ RRI+I   +++ + 
Sbjct: 283 SGRSSSDLILKDGVEDKDAS-RRIEIKFTIKNEEA 316


>gi|260555968|ref|ZP_05828188.1| small protein A [Acinetobacter baumannii ATCC 19606]
 gi|260410879|gb|EEX04177.1| small protein A [Acinetobacter baumannii ATCC 19606]
          Length = 259

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD+  +  + E    + KI E +  S     I + G TD  P    +  N  LS  RA +
Sbjct: 152 FDRFDASAIEEGTNSVVKIAEQIKKSPTTTPIIVSGFTD--PLGKFSY-NQELSSKRANT 208

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDI 336
             ++L++ GV   RI +I   +   L       N        + NRR++I
Sbjct: 209 VAKLLVRQGVEPSRI-QIQANSQTDLYKQCSDNNSSQLIQCLAPNRRVNI 257


>gi|163815615|ref|ZP_02206988.1| hypothetical protein COPEUT_01790 [Coprococcus eutactus ATCC 27759]
 gi|158449252|gb|EDP26247.1| hypothetical protein COPEUT_01790 [Coprococcus eutactus ATCC 27759]
          Length = 251

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 33/198 (16%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
              ++       L ++K +   ++K L +  K++       +  ++VK +  E + + + 
Sbjct: 40  QSKRQYESKQEQLDEQKKIIADQEKMLGEQQKELDRIAG--IRSDLVKALRDEFSGSSLN 97

Query: 226 ISIIDQRNT------PMFDKSSSIPLPETIVVLQKIGE----VL-----AHSTEVISIRG 270
           + I ++          +FD S S    +    + +       VL           I I G
Sbjct: 98  VKIDEKTGAITFDAGVLFDVSDSELKEDGKKFINQFLPKYCSVLLSDDYRDYVSEIIIEG 157

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGV----SEDRISKI---SGFAHHRLK 321
           HTD +        N  LS  RA+S  +      +G+     E+++  +   +G ++    
Sbjct: 158 HTDTN---GSYIYNLELSQQRAFSVARYCLTESNGIISSGQEEQLRTVLTANGKSYSNPI 214

Query: 322 IASD---PMNSANRRIDI 336
              D    M+++ RR++I
Sbjct: 215 YGDDGEVDMDAS-RRVEI 231


>gi|213620924|ref|ZP_03373707.1| hypothetical protein SentesTyp_26862 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 67

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
           P  +     N  LS  RA     +L   GV   R+  I G         +      + NR
Sbjct: 1   PIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTVPVADNGSKAGRAKNR 59

Query: 333 RIDILVED 340
           R++ILV +
Sbjct: 60  RVEILVVE 67


>gi|85860625|ref|YP_462827.1| outer membrane protein [Syntrophus aciditrophicus SB]
 gi|85723716|gb|ABC78659.1| outer membrane protein [Syntrophus aciditrophicus SB]
          Length = 204

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S      ++ VL    E ++   +E IS+ GHTD          N+ LS  RA S 
Sbjct: 103 FKTNSFELNIPSLKVLNSAHEAISSRQSEDISVIGHTDRV---GTDEKNYILSRKRALSV 159

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
            + L+  GV  D I  +         + +        NRR++++V
Sbjct: 160 KKYLVVKGVHPDAIE-LDYHGEANPLVKTAEGVAEPRNRRVEVIV 203


>gi|330896311|gb|EGH28406.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 384

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 274 RALNRRVEILMTPQ 287


>gi|323963914|gb|EGB59407.1| OmpA family protein [Escherichia coli M863]
          Length = 160

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G    R     G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRRNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|315058013|gb|ADT72342.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 317

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++T
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N++K +  +       I+I ++  +       +FDK S +   E    L+KI       
Sbjct: 157 ENLIKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|290957838|ref|YP_003489020.1| hypothetical protein SCAB_33721 [Streptomyces scabiei 87.22]
 gi|260647364|emb|CBG70469.1| putative secreted protein [Streptomyces scabiei 87.22]
          Length = 206

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 20/217 (9%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                      L+ +                         +  S   E +   P L   +
Sbjct: 2   TMTAPTPRTTVLAGAVAVLAALTLAAPAHAADDPSEPPGTVTTSPPPEVDANSPALKLAQ 61

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
              +   K L      I S +  L  +   +      T           +   +F K+S+
Sbjct: 62  GATLAPAKVLD-----IKSVVEDLGGEERREDTNENVT--------FALQAEVLFPKNSA 108

Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
              P+    +Q I E +       + + G TD             LS  RA + + +L  
Sbjct: 109 KLNPQARSRIQTIAEEIKKQDAVKVRVFGFTDNL---GSYAHGLTLSKKRAEAVHDLLAT 165

Query: 302 SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
             +  +   ++ G++        A++     NRR+++
Sbjct: 166 D-LDGNVTFEVRGYSEDYPIADNATEEGRKKNRRVEV 201


>gi|229523201|ref|ZP_04412608.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae TM
           11079-80]
 gi|229339564|gb|EEO04579.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae TM
           11079-80]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E +      +++ +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIDDNASPIGKDKNRRVVISLGRTQ 293


>gi|255037333|ref|YP_003087954.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254950089|gb|ACT94789.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 366

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I     T  F +S      ++   L  +   +  +    + I GHTD          N  
Sbjct: 249 ISASDKTLYFPRSDYKLPMQSRTYLDSVAMYILENKNKGLRITGHTDNV---GNPSLNLT 305

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340
           LS  R     + L+  GV E  I+ + G         +D       NRR+++ + D
Sbjct: 306 LSEYRVRVISRYLIGKGVPEGVIAAV-GVGSRFPVRPNDSEENRRMNRRVEVQIID 360


>gi|283850887|ref|ZP_06368173.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. FW1012B]
 gi|283573810|gb|EFC21784.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. FW1012B]
          Length = 171

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   PE   +L +  +++    +  + + G+ D    R  A  N  L   RA +A
Sbjct: 69  FAFDSSNLTPEARQILTRKADIMKQYPQIKVIVEGNCDQ---RGTAEYNLALGERRAQAA 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
            Q L   G+  DR+S +S +   R       +   + NRR
Sbjct: 126 AQYLSNLGIPADRLSTVS-YGKERPLDPGTGEAAYAKNRR 164


>gi|255602974|ref|XP_002537961.1| Outer membrane protein A precursor, putative [Ricinus communis]
 gi|223514409|gb|EEF24422.1| Outer membrane protein A precursor, putative [Ricinus communis]
          Length = 295

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F   S+   P     L  I  VL +++  + + I G+ D        + N +LS  RA 
Sbjct: 213 LFSFDSAKLNPN-QPKLDDIANVLNNNSSIDNVVITGYADRL---GSEKYNQKLSERRAN 268

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK 321
           S  + L+  GVS +R++ + G       
Sbjct: 269 SVKEYLVSKGVSANRLNAV-GKGESNPV 295


>gi|30250467|ref|NP_842537.1| outer membrane protein [Nitrosomonas europaea ATCC 19718]
 gi|30139308|emb|CAD86460.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 231

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 22/118 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P     L      L      + I  G+TD     + A  N  LS+ RA +
Sbjct: 113 LFDFDKAVLKPAGKQALDDFAANLEGVNYDLIIAVGYTD--RIGSEAY-NKNLSIKRAEA 169

Query: 295 AYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRIDILV 338
               L+  G+  DRI          ++G       A   L     P     RR++I V
Sbjct: 170 VKSYLVSKGIGSDRIFTDGKGEANPVTGDSCHGTKATRALIDCLAPD----RRVEIEV 223


>gi|332293247|ref|YP_004431856.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171333|gb|AEE20588.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 275

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR------- 286
            F   +   L  + V+ L+K+   L       I I GH   SP R    D +        
Sbjct: 166 FFKGGTDKMLGSSSVITLRKVVRFLEGYPTRKILITGHICCSPDREPQLDGYNNRTGSMT 225

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS DR    Y  L+K+G+S  R+ K  G A+       +     NRR+++ + +
Sbjct: 226 LSEDRGKMVYDYLIKNGISAGRL-KYRGKAYTEPLDWEET---KNRRVEMTILE 275


>gi|189463696|ref|ZP_03012481.1| hypothetical protein BACINT_00027 [Bacteroides intestinalis DSM
           17393]
 gi|189438646|gb|EDV07631.1| hypothetical protein BACINT_00027 [Bacteroides intestinalis DSM
           17393]
          Length = 397

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID-QRNTP 235
           P    +I     + +L  +  + +   + L+        + E T T +++   D    T 
Sbjct: 240 PQLISQIELAAMQDKLAAMGAQNAQLKNALI--QAQNQPVAEVTETEVIVPDPDIAPRTV 297

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   S+   P  I+ L  + E +     V  ++ G+ D++        N  LSL RA +
Sbjct: 298 FFTIGSAELSPREIMNLSYLAEQMKQFPNVTYTVNGYADSATGTPAF--NKELSLKRAQA 355

Query: 295 AYQVLMKS-GVSEDRI 309
               L+K+ G++ DR+
Sbjct: 356 VKDALVKNYGIAADRL 371


>gi|297538146|ref|YP_003673915.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297257493|gb|ADI29338.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 378

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    +        +L      +  + E   + + GHTD     + A  N +LS  RA 
Sbjct: 261 LFGFDKAKLQDGAKPILDDTVAKIKANPELKTVIVTGHTD--RIGSTAY-NQKLSEKRAS 317

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336
              + L+  GV    I+ + G        A   +         + NRR+ I
Sbjct: 318 IVKEYLVSQGVDAGIITSV-GKGESEPVEACKGVTGKKLISCLAPNRRVVI 367


>gi|295677286|ref|YP_003605810.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295437129|gb|ADG16299.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 215

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L ++   +      + +  GHTD     + A ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPAGKERLSELASKIQGINLEVVVATGHTD--RIGSDAYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  GV  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAFLVSKGVEANRIY-TEGKGRRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|254506228|ref|ZP_05118371.1| outer membrane protein [Vibrio parahaemolyticus 16]
 gi|219550708|gb|EED27690.1| outer membrane protein [Vibrio parahaemolyticus 16]
          Length = 203

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S +  P  +  ++++ + L       + ++G+  AS        N  LS  RA +
Sbjct: 83  LFANDSDVVQPIFMTQIRELADFLEEYPSTTVELQGY--ASKVGRPDY-NLELSKRRAEA 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343
              +L+   +  DR++ I GF    L +  D    ++ NR++   V   +G
Sbjct: 140 VENLLLDYQLDADRVT-IVGFGDTNLSVEGDDEQAHAQNRKVVASVIGHKG 189


>gi|258621333|ref|ZP_05716367.1| Outer membrane protein [Vibrio mimicus VM573]
 gi|258586721|gb|EEW11436.1| Outer membrane protein [Vibrio mimicus VM573]
          Length = 278

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             LEK            L       + ++KRL  L +++    S            F  +
Sbjct: 83  QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142

Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
                +S+I++ N  +     F  +S+   P+ +  L    + L A     +S+ GH D+
Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                 A  N +L++ RA    + L   G++ +RI+  S           +       NR
Sbjct: 198 ---SGNAEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253

Query: 333 RIDILV-------EDRQG 343
           R+ I +         +QG
Sbjct: 254 RVSIEIITADSPNLSKQG 271


>gi|258545746|ref|ZP_05705980.1| peptidoglycan-associated lipoprotein [Cardiobacterium hominis ATCC
           15826]
 gi|258518991|gb|EEV87850.1| peptidoglycan-associated lipoprotein [Cardiobacterium hominis ATCC
           15826]
          Length = 189

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D+     F   SS     +  V+++  + L    +  + + GHTD    R     N  L 
Sbjct: 82  DKDRIIYFSYDSSAIDSRSEAVIREHAKYLRAHPQTRVVLEGHTDE---RGTREYNIGLG 138

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
             RAYS  +  + +G+S  ++ ++  +   R     +S+   + NRR  I+
Sbjct: 139 ERRAYSVKERFVAAGISPQQM-RVLSYGEERPAAFGSSEEDYAKNRRAVIV 188


>gi|42528870|gb|AAS18468.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Gallinarum]
          Length = 319

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 241 SSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            S   PE    L ++   L++       + + G TD     + A  N  LS  RA S   
Sbjct: 206 KSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLSEKRAQSVVD 262

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDILVE 339
            L+  G+  D+IS   G         +      P  +       +RR++I V+
Sbjct: 263 YLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVK 314


>gi|88658586|ref|YP_507279.1| OmpA family protein [Ehrlichia chaffeensis str. Arkansas]
 gi|88600043|gb|ABD45512.1| OmpA family protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 175

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +        +L+K+ +      +  I I GHTD    R     N  L   RA + 
Sbjct: 46  FGFGKATIEDSDKTILEKVMQKAEEYPDTNIIIVGHTDT---RGTDEYNLELGKQRANAV 102

Query: 296 YQ-VLMKSGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340
              +L ++   EDRI  +  G +   + + +++P  +      NRR+ I + D
Sbjct: 103 KDFILERNKSLEDRIIIESKGKSEPAVLVYSNNPEEAEYAHTKNRRVVITLTD 155


>gi|154245935|ref|YP_001416893.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154160020|gb|ABS67236.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2]
          Length = 220

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD +S++  PE+   L  I + + +         + G+TDA+  R +   N +LS +R+ 
Sbjct: 109 FDLNSAMIKPESYRTLGSIADAMHNPVLLGYKFLVVGNTDATGTREL---NMKLSQERSD 165

Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  + L     V   R+  + G     L+    P  + NRR+ I
Sbjct: 166 AVVEALSTTFRVDPRRLQSV-GLGEEALQDPKHPDAAINRRVQI 208


>gi|148265117|ref|YP_001231823.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146398617|gb|ABQ27250.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 1700

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 71/207 (34%), Gaps = 30/207 (14%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           +E       + +   ++   S +  ++   ++    P L    + A  +  R +   +  
Sbjct: 24  AETAPAETVKTAAGTREAAASGETTETHLPKDQALTPWLLDPSVFAEDQGDRTEK-RRVA 82

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-V 258
              +  +   N+V  +                     F    +    E + +L+ + E +
Sbjct: 83  EKEVKTIKLANVVPPIR--------------------FRTGEADIPDEYVALLRGVLEKM 122

Query: 259 LAHSTEVISIRGHTD----ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313
                  +   GH D    + P +    DN  LS +RA +  +   ++ G+  + I    
Sbjct: 123 RGRLNVRLHFVGHADPQSLSDPLKAKYGDNTGLSRERAGTTAEYCQRALGLPPEAI-SYE 181

Query: 314 GFAHHRLK--IASDPMNSANRRIDILV 338
           G    +     A++   + NRR+++ V
Sbjct: 182 GVGESKPVAGNATEDGRALNRRVEVEV 208


>gi|68171722|ref|ZP_00545076.1| OmpA/MotB [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998855|gb|EAM85553.1| OmpA/MotB [Ehrlichia chaffeensis str. Sapulpa]
          Length = 175

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +        +L+K+ +      +  I I GHTD    R     N  L   RA + 
Sbjct: 46  FGFGKATIEDSDKTILEKVMQKAEEYPDTNIIIVGHTDT---RGTDEYNLELGKQRANAV 102

Query: 296 YQ-VLMKSGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340
              +L ++   EDRI  +  G +   + + +++P  +      NRR+ I + D
Sbjct: 103 KDFILERNKSLEDRIIIESKGKSEPAVLVYSNNPEEAEYAHTKNRRVVITLTD 155


>gi|285019182|ref|YP_003376893.1| pal family outer membrane lipoprotein [Xanthomonas albilineans GPE
           PC73]
 gi|283474400|emb|CBA16901.1| probable pal family outer membrane lipoprotein [Xanthomonas
           albilineans]
          Length = 172

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+TD    R     N  L   RA S 
Sbjct: 69  FDLDKDTVKPEFQAIMACHAKYLRDRPSSRITLQGNTDE---RGSREYNMGLGERRANSV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
           +  L  +G S  +++ +S F         +++   S NRR++I+
Sbjct: 126 FSALQANGGSAAQLTVVS-FGEEHPVCTESNESCWSQNRRVEIV 168


>gi|154508361|ref|ZP_02044003.1| hypothetical protein ACTODO_00858 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797995|gb|EDN80415.1| hypothetical protein ACTODO_00858 [Actinomyces odontolyticus ATCC
           17982]
          Length = 177

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S         VL  +  E        +S+ GHTD+         N  LS  RA + 
Sbjct: 76  FEVDSDQLTARAKEVLDSLASEWTKAKPSTVSVMGHTDSVA---DDAHNLDLSKRRAKAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              L K  V    I+   G           +D   + NRR++I
Sbjct: 133 GDYL-KGKVPGLSIT-TDGKGEAEPIGDNETDEGRAQNRRVEI 173


>gi|303245612|ref|ZP_07331895.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492875|gb|EFL52740.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ]
          Length = 345

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE + VL++   ++       + + G+TD+         N +L   RA S 
Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKPTMKVILEGNTDS--IGTPQY-NMKLGQRRADSV 298

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
               +K G+   RI  IS G         +    + NRR  I
Sbjct: 299 KAFFVKKGIDASRIEAISLGLTDPVATNKTAQGRALNRRCVI 340


>gi|296113590|ref|YP_003627528.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis RH4]
 gi|295921284|gb|ADG61635.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis RH4]
          Length = 171

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   +L +  + L  + T  + + GHTD    R     N  L   RA + 
Sbjct: 71  FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              L+  G+++  +  IS F   R      ++   S NRR ++
Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169


>gi|156977089|ref|YP_001447995.1| hypothetical protein VIBHAR_05874 [Vibrio harveyi ATCC BAA-1116]
 gi|156528683|gb|ABU73768.1| hypothetical protein VIBHAR_05874 [Vibrio harveyi ATCC BAA-1116]
          Length = 1211

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 22/201 (10%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
              +        DL   I +         + +       +++ Q+   ++ + +  L  +
Sbjct: 186 SGSQAAQGSAHGDLLSKIQEYMATTASVQADKAQAFQGTEEKYQNAVNQLRNEMPDLFVE 245

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVI 266
                +        + +++        F+  S     +   V ++I E L         I
Sbjct: 246 EGSVSLDQRVEDVLLRLNMT------FFEFDSYQVTEKG-SVHKRIAEQLQALISNPFEI 298

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-----ISKIS--GFAHHR 319
            I GHT           N  LS  RA S  + ++ +   + R     + KI   G+A   
Sbjct: 299 VITGHTCNM---GSEAYNLALSEKRAVSVKEAILDAMSPDARSVWSPLFKIVAKGYAVSL 355

Query: 320 LKIASDP--MNSANRRIDILV 338
               +        NRR++I +
Sbjct: 356 PGNTNRTIEERVKNRRVEIYL 376


>gi|254490152|ref|ZP_05103343.1| peptidoglycan-associated lipoprotein, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464638|gb|EEF80896.1| peptidoglycan-associated lipoprotein, putative [Methylophaga
           thiooxydans DMS010]
          Length = 188

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    E    LQ     LA      + + GHTD    R     N  L   RA S 
Sbjct: 85  FEYDSATVRVEDQETLQAHAAYLAKKPNLTLRLEGHTDE---RGAREYNLALGERRALSI 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
            Q+LM  G S ++  +++ F   R         +   NRR++++
Sbjct: 142 RQILMLQGASINQF-QVTSFGEERPAEEGSSEYAWSQNRRVELV 184


>gi|94987344|ref|YP_595277.1| outer membrane protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731593|emb|CAJ54956.1| outer membrane protein [Lawsonia intracellularis PHE/MN1-00]
          Length = 340

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S         +L++   ++  + +  + + G TD++        N RLS +RA + 
Sbjct: 239 FAFDSFALDDTAKAILEETVRLIRANPDFNVRLLGWTDST---GPDAYNLRLSQERADAV 295

Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDIL 337
              L+K G+  +R+    G    ++   A+      NRR +++
Sbjct: 296 KNFLVKMGIPSNRLFA-KGMGKSYQYNNATKEGRYMNRRTELV 337


>gi|84687704|ref|ZP_01015577.1| OmpA/MotB family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664287|gb|EAQ10778.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2654]
          Length = 165

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   P+   +L +  + L  +T     I GH D          N  L   R
Sbjct: 55  DRVLFMVDQSTLSPQAQGILDQQAQWLNSNTAYSAIIEGHADEQ---GTREYNVALGARR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333
           A S    L++ GV+  R+  +S      L I SD      NRR
Sbjct: 112 ASSVQSYLIERGVAPGRLKTVSYGKERPLAICSDESCYQQNRR 154


>gi|295395658|ref|ZP_06805850.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971474|gb|EFG47357.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 607

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 21/114 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD  S         ++  I   L    + + ++I GHTD        + N  LS  RA 
Sbjct: 295 LFDFDSDKVKDSDSKLIDGIANELKKSAAGQKVTIEGHTDDE---GDEKYNVDLSNRRAE 351

Query: 294 SAYQVLM----KSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335
           S  +VL      SG+S     +  GF   +  + +            + NRR+ 
Sbjct: 352 SVKKVLEPKVKGSGIS----FETKGFGESQPILPNRTAGGDAIKKNQAKNRRVS 401


>gi|294787834|ref|ZP_06753078.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
 gi|294484127|gb|EFG31810.1| OmpA family protein [Simonsiella muelleri ATCC 29453]
          Length = 229

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285
            +I  ++  +F    S    E +  L +    L  +    + + GHTD   F      N 
Sbjct: 82  EVISFQSNFLFGFDKSTLRSEAVAKLNETAAKLRGTEVQSVRVEGHTD---FMGKDTYNQ 138

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            LS  RA      L   GV   +IS + G+   + +
Sbjct: 139 ALSERRANVVANYLANQGVPAGKISAV-GYGESQAR 173


>gi|222149664|ref|YP_002550621.1| peptidoglycan-associated lipoprotein [Agrobacterium vitis S4]
 gi|221736646|gb|ACM37609.1| peptidoglycan-associated lipoprotein [Agrobacterium vitis S4]
          Length = 177

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + L   +   I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSTSIRADAQQTLDRQAQWLQRYSQYPITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+  +RI  IS +   R     D ++  S NRR
Sbjct: 125 AASTKAYLVSRGIPANRIKTIS-YGKERPVATCDDISCWSQNRR 167


>gi|110086793|gb|ABG49460.1| hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 345

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342


>gi|37704672|gb|AAR01608.1| OprF [Pseudomonas sp. MFY245]
          Length = 314

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+    +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 231 FDFDKSVVKENSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314


>gi|229525621|ref|ZP_04415026.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae bv.
           albensis VL426]
 gi|297578614|ref|ZP_06940542.1| sodium-type flagellar protein MotY [Vibrio cholerae RC385]
 gi|229339202|gb|EEO04219.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae bv.
           albensis VL426]
 gi|297536208|gb|EFH75041.1| sodium-type flagellar protein MotY [Vibrio cholerae RC385]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E +      +++ +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|103485733|ref|YP_615294.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98975810|gb|ABF51961.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 170

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278
             T +   +       +F  + S    E    ++ I   L         + GHTD++   
Sbjct: 47  VETALGWELS-MPERLLFPTNESAVPAEQQERMRAIAMRLVSVGITTARVEGHTDST--- 102

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             +  N  LS  RA +    +   G++     +I G         +D       NRR+ +
Sbjct: 103 GSSAYNLTLSRARAEAVAAPMRAGGMTFT-ADQIVGRGETLPLSGNDTAEGRQDNRRVVV 161

Query: 337 LVED 340
           +V  
Sbjct: 162 IVTP 165


>gi|296313331|ref|ZP_06863272.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
 gi|296840145|gb|EFH24083.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
          Length = 231

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F     +   E    L+ + + L  +    + + GHTD   F    + N  LS  RA  
Sbjct: 93  LFGFDKDVLRAEAQDNLKVLAQRLGQTNVQSVRVEGHTD---FMGSEKYNQTLSERRANV 149

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   + S + G    +
Sbjct: 150 VANYLVSNGVPASKTSAV-GLGESQ 173


>gi|238754341|ref|ZP_04615697.1| Outer membrane protein A [Yersinia ruckeri ATCC 29473]
 gi|238707374|gb|EEP99735.1| Outer membrane protein A [Yersinia ruckeri ATCC 29473]
          Length = 355

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L+        + + G  D       A  N +LS
Sbjct: 227 KSDVLFAFNKATLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQAAPNLKLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
            +RA S  + L+  G+  D+IS   G         +      P  +       +RR++I 
Sbjct: 284 ENRARSVVEYLVAKGIPADKISA-RGMGQADPVTGNTCDNVKPRAALIECLAPDRRVEIE 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|153829514|ref|ZP_01982181.1| sodium-type flagellar protein MotY [Vibrio cholerae 623-39]
 gi|148874974|gb|EDL73109.1| sodium-type flagellar protein MotY [Vibrio cholerae 623-39]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E +      +++ +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|327405082|ref|YP_004345920.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320590|gb|AEA45082.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 694

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           S    P +  VL K+ E L  +   V+ I  HTDA   R     N  LS  RA S    L
Sbjct: 566 SDKLRPASEAVLDKLLEFLELNNNIVVEINSHTDA---RGKDIYNLDLSQRRAKSCVDYL 622

Query: 300 MKSGVSEDRISKISGFAHHRL 320
           +  G++ +R+    G+   + 
Sbjct: 623 VSKGITPERLIA-KGYGETQP 642


>gi|323138982|ref|ZP_08074042.1| peptidoglycan-associated lipoprotein [Methylocystis sp. ATCC 49242]
 gi|322395736|gb|EFX98277.1| peptidoglycan-associated lipoprotein [Methylocystis sp. ATCC 49242]
          Length = 179

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  S+         L K  E L        ++ GH D    R     N+ L   R
Sbjct: 70  DRIFFETDSTDLTSTAQATLDKQAEWLNRYGRYSFTVEGHADE---RGTREYNFALGARR 126

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A      L+  GVS  RI  +S +   R     D ++  S NRR
Sbjct: 127 AEVTKNYLISKGVSGSRIRTVS-YGKERPVAVCDDISCWSQNRR 169


>gi|260779363|ref|ZP_05888255.1| sodium-type flagellar protein MotY precursor [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605527|gb|EEX31822.1| sodium-type flagellar protein MotY precursor [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 293

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D+SS      +   L +I E + H+ ++  + +  +T     ++ +++   LS  RA  
Sbjct: 187 YDRSSVQLNKASQKRLAQIAEYIRHNQDIDLVLVSTYTSNEESKSASQN---LSEQRAEV 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
                   G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 244 LRDYFKSLGLPEDRI-QVQGYGRRRPVADNASPLGKDKNRRVVISLGRTQ 292


>gi|213963879|ref|ZP_03392126.1| immunogenic 75 kDa protein PG4 [Capnocytophaga sputigena Capno]
 gi|213953469|gb|EEB64804.1| immunogenic 75 kDa protein PG4 [Capnocytophaga sputigena Capno]
          Length = 658

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +    L KI  ++       + +R HTD+   R   + N  LS  RA S 
Sbjct: 550 FDYDKANIRKDAAEQLAKIVAIMKEYPTMKVDVRLHTDS---RGSDKYNLALSERRAKST 606

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            + ++  G+ ++RI+   G+   +L          ++  + ANRR + ++
Sbjct: 607 IKWIVSHGIKKNRITG-KGYGETQLVNGCSNGVPCTEEEHQANRRSEFII 655


>gi|332292047|ref|YP_004430656.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170133|gb|AEE19388.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 650

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 99/263 (37%), Gaps = 24/263 (9%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--------EHCKNSL 147
             I+ S D+     + D ++G     ++     ++I+     +             K+S 
Sbjct: 388 EPINSSFDDFTFILNEDTQVGYFASNRKRGMGSDDIYKFLKEEIPCDIKLVGVVTDKDSG 447

Query: 148 TRDSEKGKDL--CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST--L 203
               E    L   +   +E         +    +      ++  K     A+ I++T  +
Sbjct: 448 NPIPEATVQLINSEGVVVEAVQATNMGTYAFEATCVTQYVVRASKEEYTTAEAITTTPDI 507

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +G +A+++V  +L +    G  ++ + + N   FD       P+  + L+K+  V+    
Sbjct: 508 TGTLANDLVLSLLQKPINIGDDLAKVLELNPIYFDFDRFNIRPDAALELEKVIAVMREYP 567

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
             V+  R HTD+   R     N  LS  RA +    ++  G+S  RIS   G+   +   
Sbjct: 568 NLVLDARSHTDS---RGKDSYNLSLSDKRAKATVAYIINQGISSSRISG-QGYGEKQPVN 623

Query: 323 A-------SDPMNSANRRIDILV 338
                   S+  +  NRR + +V
Sbjct: 624 TCSNGVNCSEEEHQLNRRSEFIV 646


>gi|258622021|ref|ZP_05717050.1| sodium-type flagellar protein MotY [Vibrio mimicus VM573]
 gi|258627110|ref|ZP_05721906.1| sodium-type flagellar protein MotY [Vibrio mimicus VM603]
 gi|262165241|ref|ZP_06032978.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus VM223]
 gi|258580628|gb|EEW05581.1| sodium-type flagellar protein MotY [Vibrio mimicus VM603]
 gi|258585774|gb|EEW10494.1| sodium-type flagellar protein MotY [Vibrio mimicus VM573]
 gi|262024957|gb|EEY43625.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus VM223]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E + +++++  + +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|212693934|ref|ZP_03302062.1| hypothetical protein BACDOR_03458 [Bacteroides dorei DSM 17855]
 gi|237723935|ref|ZP_04554416.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265751214|ref|ZP_06087277.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663466|gb|EEB24040.1| hypothetical protein BACDOR_03458 [Bacteroides dorei DSM 17855]
 gi|229437761|gb|EEO47838.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263238110|gb|EEZ23560.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 401

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWR 286
           + D  N   F+   +   P+   ++ +I ++ L  +++   I G TDA   +  ++ N  
Sbjct: 280 LCDLFNNIYFEFDKTEITPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNME 336

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           LS  RA +    L+K GV  +++ K  G        + +  N
Sbjct: 337 LSQKRADAVVNALIKKGV-PNKMLKAKGVGAKISYASQNAPN 377


>gi|26987864|ref|NP_743289.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24982567|gb|AAN66753.1|AE016303_8 OmpA family protein [Pseudomonas putida KT2440]
          Length = 344

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+    +  K+++T +  K     +S+         ++         KI     +  
Sbjct: 55  PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 114

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +   K+   +     +   +  +   T   + +      + P      ++ LP ++  
Sbjct: 115 LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 165

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + ++ + +    +  + + GH D+      A  N +LSL+RA S   +   SG+  DR++
Sbjct: 166 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 222

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            + G      + A+D     + NRR+++L+  +
Sbjct: 223 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 254


>gi|15641023|ref|NP_230654.1| sodium-type flagellar protein MotY [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|227081182|ref|YP_002809733.1| sodium-type flagellar protein MotY [Vibrio cholerae M66-2]
 gi|229505393|ref|ZP_04394903.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae BX
           330286]
 gi|229510937|ref|ZP_04400416.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae B33]
 gi|229518058|ref|ZP_04407502.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae RC9]
 gi|229608412|ref|YP_002879060.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae
           MJ-1236]
 gi|254848138|ref|ZP_05237488.1| sodium-type flagellar protein MotY [Vibrio cholerae MO10]
 gi|255744790|ref|ZP_05418741.1| sodium-type flagellar protein MotY precursor [Vibrio cholera CIRS
           101]
 gi|298498879|ref|ZP_07008686.1| sodium-type flagellar protein MotY [Vibrio cholerae MAK 757]
 gi|9655471|gb|AAF94169.1| sodium-type flagellar protein MotY [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|227009070|gb|ACP05282.1| sodium-type flagellar protein MotY [Vibrio cholerae M66-2]
 gi|229344773|gb|EEO09747.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae RC9]
 gi|229350902|gb|EEO15843.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae B33]
 gi|229357616|gb|EEO22533.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae BX
           330286]
 gi|229371067|gb|ACQ61490.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae
           MJ-1236]
 gi|254843843|gb|EET22257.1| sodium-type flagellar protein MotY [Vibrio cholerae MO10]
 gi|255737821|gb|EET93215.1| sodium-type flagellar protein MotY precursor [Vibrio cholera CIRS
           101]
 gi|297543212|gb|EFH79262.1| sodium-type flagellar protein MotY [Vibrio cholerae MAK 757]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E +      +++ +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|19881369|gb|AAM00927.1|AF491819_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341


>gi|109896581|ref|YP_659836.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109698862|gb|ABG38782.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 368

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +++    +F  +S+         ++     +         I G+  AS       + W L
Sbjct: 249 VEETLRILFANNSAEIANRANSDIRDFAAFMKRFPSTDTVIEGY--ASAPGESDYNQW-L 305

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           S +RA +   VL++   +   RI+ + GF   +L  A     +   NRRI
Sbjct: 306 SEERAKAVRMVLIEDYDIKPARITAV-GFGESKLLDAPTAKEANKINRRI 354


>gi|147674163|ref|YP_001216480.1| sodium-type flagellar protein MotY [Vibrio cholerae O395]
 gi|229529898|ref|ZP_04419288.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae
           12129(1)]
 gi|146316046|gb|ABQ20585.1| sodium-type flagellar protein MotY [Vibrio cholerae O395]
 gi|227012825|gb|ACP09035.1| sodium-type flagellar protein MotY [Vibrio cholerae O395]
 gi|229333672|gb|EEN99158.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae
           12129(1)]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E +      +++ +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|326572627|gb|EGE22616.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis CO72]
          Length = 186

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   +L +  + L  + T  + + GHTD    R     N  L   RA + 
Sbjct: 86  FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 142

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              L+  G+++  +  IS F   R      ++   S NRR ++
Sbjct: 143 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 184


>gi|167563638|ref|ZP_02356554.1| ompA family protein [Burkholderia oklahomensis EO147]
          Length = 209

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 86  LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       +  +     N           RR+++ V   Q
Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199


>gi|288225941|gb|ADC44455.1| OmpA [Candidatus Erwinia dacicola]
 gi|288225945|gb|ADC44457.1| OmpA [Candidatus Erwinia dacicola]
          Length = 324

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 196 KSDVLFNFNKNTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 252

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337
             RA S    L+  G+   +I    G       I S  D +   N         RR++I 
Sbjct: 253 EKRAQSVVDHLVSKGIPASKIYA-RGKGKSNPIIGSTCDSVKGRNALIDCLAPDRRVEIE 311

Query: 338 VE 339
           V+
Sbjct: 312 VK 313


>gi|262402652|ref|ZP_06079213.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC586]
 gi|262351434|gb|EEZ00567.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC586]
          Length = 294

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E + +++++  + +  +TD++   N +++   LS  RA    + 
Sbjct: 192 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293


>gi|224371704|ref|YP_002605868.1| OmpA3 [Desulfobacterium autotrophicum HRM2]
 gi|223694421|gb|ACN17704.1| OmpA3 [Desulfobacterium autotrophicum HRM2]
          Length = 196

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   +    E++ ++ ++   +   +   ISI GHTD         +N +LSL+RA   
Sbjct: 95  FNTGDTSLTKESLDLIPEVLNSVKERAPSEISIIGHTDTK--GASVYNN-KLSLERANKV 151

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
            +++     +   I  I     +   +    +     NRR++I+V
Sbjct: 152 AKIITHIDANLKNIY-IQFHGENDPLVITGDNVSEKRNRRVEIMV 195


>gi|218675048|ref|ZP_03524717.1| OmpA family membrane protein [Rhizobium etli GR56]
          Length = 500

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + +        +E   I GHTDA       + N  LS  R
Sbjct: 385 FATGSAEIPMTQARTLRKVADAINQVLEKDPSETFLIEGHTDAV---GSDQSNLILSDQR 441

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G++ + +    G+    LK+ +      NRR+ I
Sbjct: 442 AESVANVLTDVYGIAPENL-ATQGYGERYLKVNTSDPEQENRRVTI 486


>gi|59711130|ref|YP_203906.1| outer membrane protein [Vibrio fischeri ES114]
 gi|59479231|gb|AAW85018.1| outer membrane protein [Vibrio fischeri ES114]
          Length = 219

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +F+         +  +LQ + E L    + + + GHTD    +     N  L L R+ 
Sbjct: 111 RVLFNFDQYSLTERSKYILQSVTEKLETQKDTVLLNGHTDN---KGRENYNINLGLARSN 167

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           S    L+  G S++++   S F   +    +  +     NRR+DI
Sbjct: 168 SVKAFLLAQGASKEQLESYS-FGEQQPIDDNTTLEGQHHNRRVDI 211


>gi|260426487|ref|ZP_05780466.1| outer membrane protein, OmpA/MotB family [Citreicella sp. SE45]
 gi|260420979|gb|EEX14230.1| outer membrane protein, OmpA/MotB family [Citreicella sp. SE45]
          Length = 695

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 31/250 (12%)

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           R   +      D+  T++ V+   G+  +  K    R+      L + Q      ++   
Sbjct: 456 RPGSDVTTYRYDDGSTRSVVEYDDGNVVETVKAADGRVLRRTRTLPDGQSIVLFDDTQAE 515

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                 DL ++T+  + +N +E       +     +     R        + +L+ +   
Sbjct: 516 TEVVVNDLPQTTETPRRMNFQEVDETELAAALAAESGTSVDR--------TFSLNQIRNI 567

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEV 265
           + V+ ++ E +        +D  N   F+  S+   PE    L  +G    +V+A     
Sbjct: 568 DAVRHLVPEVS--------VDSIN---FETGSAAIRPEEARALAALGNAMKQVIAERPGE 616

Query: 266 I-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323
           +  I GHTDA    +    N  LS  RA S    L +   V  + +  + G+    L + 
Sbjct: 617 VFLIEGHTDA--VGSWTY-NLALSDRRAESVALALTEYFDVPPENMV-LQGYGEGDLAVQ 672

Query: 324 SDPMNSANRR 333
           SD     NRR
Sbjct: 673 SDAAERENRR 682


>gi|226227699|ref|YP_002761805.1| putative outer membrane protein [Gemmatimonas aurantiaca T-27]
 gi|226090890|dbj|BAH39335.1| putative outer membrane protein [Gemmatimonas aurantiaca T-27]
          Length = 233

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 16/179 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILISIIDQR-N 233
            LS E+         LQ+  + +  ++  L  D   +   +    T  G  I+ ++    
Sbjct: 47  ALSTERTERTTADNALQNDVRGVRGSVDSLRTDLNALRTDLQTLRTEYGAKITALEGAVK 106

Query: 234 TPM---FDKSSSIPLPETIVVLQKIGEVL-AHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
             M   F    +    E    L+K  +V  +H     I++ G +D  P  + A  N RLS
Sbjct: 107 FAMPVHFGFDDAAVRQEDQAALEKFAQVAQSHYPGATITVEGFSD--PAGSAAY-NLRLS 163

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDRQG 343
            +RA +    L+  G+    + +  G+   RL        +     NRR+  ++E   G
Sbjct: 164 RERADAVRDFLVTKGMDGAAL-RTVGYGKARLVRPGAKGDESGAELNRRVTFVIESSGG 221


>gi|58200723|gb|AAW66611.1| hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341


>gi|2499351|sp|Q99124|OMPA_ESCBL RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II
 gi|146989|gb|AAA24235.1| outer membrane protein II [Escherichia blattae]
          Length = 241

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G+TD     + A  N RLS
Sbjct: 122 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 178

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA S    L+  G+   +I+   G         +   N           + +RR++I 
Sbjct: 179 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGNTCDNVKKRAALIDCLAPDRRVEIE 237

Query: 338 VE 339
           V+
Sbjct: 238 VK 239


>gi|19881365|gb|AAM00925.1|AF491817_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341


>gi|326795240|ref|YP_004313060.1| peptidoglycan-associated lipoprotein [Marinomonas mediterranea
           MMB-1]
 gi|326546004|gb|ADZ91224.1| peptidoglycan-associated lipoprotein [Marinomonas mediterranea
           MMB-1]
          Length = 200

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 18/182 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           S N  E      ++++   A + +       +  S    G   D  +  V+ + + +   
Sbjct: 23  STNATETDSSSTVAEDSASATEEQSADAAGQEAGSDQSFGAGEDGSITSVVVDDSGSA-- 80

Query: 226 ISIIDQRNTPM--------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
            S +DQ    +        FD   SI  PE    L K  E L  + +  + + GH D   
Sbjct: 81  -SAVDQDVDLLAGVETVFYFDFDKSIVRPEAREALAKHAEFLVANPDARVVLEGHADE-- 137

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
            R     N  L   RA +  + L   GV+  +I  +S F           D     NRR+
Sbjct: 138 -RGTREYNMALGERRAKAVARYLTIQGVAASQIESVS-FGEEVPVAFGHDDASWQLNRRV 195

Query: 335 DI 336
           ++
Sbjct: 196 EV 197


>gi|296103033|ref|YP_003613179.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057492|gb|ADF62230.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 359

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N +LS
Sbjct: 231 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQKLS 287

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR++I 
Sbjct: 288 EKRAQSVVDYLISKGIPANKISP-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 346

Query: 338 VE 339
           V+
Sbjct: 347 VK 348


>gi|227822263|ref|YP_002826234.1| OmpA family protein [Sinorhizobium fredii NGR234]
 gi|227341263|gb|ACP25481.1| OmpA family protein [Sinorhizobium fredii NGR234]
          Length = 758

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V   + +VL         I GHTDA       R N  LS +R
Sbjct: 644 FATGSAEVSMSQAKTLRNVADAMSKVLEKDPGETFFIEGHTDAV---GSDRSNLVLSDER 700

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  GV  + +    G+    LKI +      NRR+ I
Sbjct: 701 AESVAVLLTEVYGVPAENLV-TQGYGERFLKIRTPEAEQENRRVTI 745


>gi|223041430|ref|ZP_03611633.1| lipoprotein Plp4 [Actinobacillus minor 202]
 gi|223017688|gb|EEF16095.1| lipoprotein Plp4 [Actinobacillus minor 202]
          Length = 294

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        E +  +  + + L       I + G+TD          N  LS  RA +
Sbjct: 142 LFDFDKDSLTAEGVRTVNALADKLKSLPVKSIVVEGYTDRM---GTVEYNLDLSQRRANT 198

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-----NRRI 334
               L + GV+ + ++ +  G A+       +   +      NRR+
Sbjct: 199 VKAELQRLGVTTE-LNAVGYGKANQVKHCDGNDQAAKDCLRPNRRV 243


>gi|126699538|ref|YP_001088435.1| hypothetical protein CD1929 [Clostridium difficile 630]
 gi|255306922|ref|ZP_05351093.1| hypothetical protein CdifA_10067 [Clostridium difficile ATCC 43255]
 gi|115250975|emb|CAJ68804.1| putative membrane protein [Clostridium difficile]
          Length = 210

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249
           S ++SG V  ++ K V    E T     I + +D+ N         MFD  S +  PE  
Sbjct: 40  SESISGSVEQDLAKNVNASVEETFKKSGIPVKVDKSNGQVTFGEKTMFDVDSDVLKPEAK 99

Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            +L+         +     + IS   I GHTD          N  LS  RAYS  + ++ 
Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156

Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336
             + +    D+++K I      + ++  +  NS N    RR+++
Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200


>gi|58422897|gb|AAW73248.1| OmpA [Citrobacter freundii]
          Length = 222

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 114 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 170

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             RA S    L+  G+  D+IS   G         +
Sbjct: 171 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGN 205


>gi|255020103|ref|ZP_05292174.1| outer membrane protein [Acidithiobacillus caldus ATCC 51756]
 gi|254970465|gb|EET27956.1| outer membrane protein [Acidithiobacillus caldus ATCC 51756]
          Length = 183

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS  L   I VL ++ E      + VI++ G+  AS     A  N +LS  RA S 
Sbjct: 73  FKFNSSKLLDRDIKVLDEVAEFAQKHPDAVINVNGY--ASKVGTYAY-NLKLSQQRAESV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            + L + GV  DR+  + G ++     ++        N+R++I
Sbjct: 130 ARYLEQHGVPRDRMV-LKGHSYEDPIASNATPQGRFENQRVEI 171


>gi|89067611|ref|ZP_01155065.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046581|gb|EAR52636.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola
           granulosus HTCC2516]
          Length = 675

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+ +S+   PE    L  +G+    ++  +   +  I GHTDA      A  N  LS  R
Sbjct: 566 FETASAAIRPEEAEELAALGQAITAIIRENPRAVFLIEGHTDAV---GNASYNLALSDRR 622

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           A S    L +  GV  + +    G+   +L + +     ANRR
Sbjct: 623 AESVALALTEYFGVPPENLV-TQGYGESQLLVPTAEAERANRR 664


>gi|238792361|ref|ZP_04635995.1| Outer membrane protein A [Yersinia intermedia ATCC 29909]
 gi|238728287|gb|EEQ19807.1| Outer membrane protein A [Yersinia intermedia ATCC 29909]
          Length = 358

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L+        + + G  D          N  LS
Sbjct: 230 KSDVLFAFNKATLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISGF--AHHRLKIASDPMNSANRRIDILV 338
             RA S    L+  G+  D+I+         ++G   A  + + A     + +RR++I V
Sbjct: 287 QRRADSVRDYLVSKGIPADKITARGEGQANPVTGSTCATVKPRAALIECLAPDRRVEIEV 346

Query: 339 E 339
           +
Sbjct: 347 K 347


>gi|307944546|ref|ZP_07659886.1| outer membrane lipoprotein Omp16 [Roseibium sp. TrichSKD4]
 gi|307772295|gb|EFO31516.1| outer membrane lipoprotein Omp16 [Roseibium sp. TrichSKD4]
          Length = 163

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F +  S    +    L K  + L   +   +++ GH D    R   + N  L   R
Sbjct: 54  DRIYFAEDQSTLSSQARATLDKQVQWLNRYSQYTVTVEGHADE---RGTRQYNLALGARR 110

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A SA   L+  G+S  RI  IS +   R      +D   + NRR
Sbjct: 111 ANSARDYLVSRGISTTRIKTIS-YGKERPVAVCNNDSCWTQNRR 153


>gi|158318192|ref|YP_001510700.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec]
 gi|158113597|gb|ABW15794.1| OmpA/MotB domain protein [Frankia sp. EAN1pec]
          Length = 186

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD +S+   PE    L      +      + + G++D          N  LS  RA + 
Sbjct: 89  LFDANSADLRPEAATALAGTVPQIREHDGRVQVVGYSDGL---GTTEHNLDLSRRRAVAV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              L+   +    + ++               +++ RR++I++
Sbjct: 146 QAYLVSQDIPAS-LLEVEAKGEQ--GATDGVADASRRRVEIVL 185


>gi|326559589|gb|EGE10003.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 7169]
 gi|326562671|gb|EGE12973.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis
           103P14B1]
 gi|326564691|gb|EGE14909.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis
           46P47B1]
 gi|326565509|gb|EGE15680.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis
           12P80B1]
 gi|326567731|gb|EGE17837.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC1]
 gi|326568633|gb|EGE18704.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC7]
 gi|326574224|gb|EGE24172.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis
           101P30B1]
 gi|326575009|gb|EGE24938.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis O35E]
          Length = 171

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   +L +  + L  + T  + + GHTD    R     N  L   RA + 
Sbjct: 71  FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              L+  G+++  +  IS F   R      ++   S NRR ++
Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169


>gi|315057756|gb|ADT72085.1| Flagellar motor rotation protein MotB [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 247

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++  K+  K+ +  K   KEE+  L  L +  +   +  KRLQ    +  +     VA 
Sbjct: 60  STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266
           N+   V                     F++ S+     +    L++I E+  +      I
Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRIAELTTYLPPQAKI 155

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            IRG+TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P
Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210

Query: 327 MNSANRRIDI 336
               N R++I
Sbjct: 211 QALENNRVEI 220



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD  +      ++K          + S +LK        Q + ++     L  
Sbjct: 53  ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183
           S            + E+G     S D++  + +      +LPP +K +I
Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRIAELTTYLPPQAKIEI 157


>gi|294637420|ref|ZP_06715711.1| peptidoglycan-associated lipoprotein [Edwardsiella tarda ATCC
           23685]
 gi|291089413|gb|EFE21974.1| peptidoglycan-associated lipoprotein [Edwardsiella tarda ATCC
           23685]
          Length = 170

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F        PE +  L      L ++    +++ GHTD    R    
Sbjct: 57  LQMQELQKNNIVYFGLDKYDVTPEYMQELDAHAAFLRNNPSYKVTVEGHTDE---RGTPE 113

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            N  L   RA +    L   GVS D+I  +S +   +  +    +   + NRR
Sbjct: 114 YNIALGERRANAVKMYLQGKGVSADQIDIVS-YGKEKPAVLGHDEAAYAKNRR 165


>gi|239817427|ref|YP_002946337.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110]
 gi|239804004|gb|ACS21071.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110]
          Length = 168

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+   V++     L +     + I GHTD    R     N  L   RA S 
Sbjct: 67  FDFDKYDVKPQYRNVVEAHASYLRNRPASKVVIEGHTD---LRGGREYNLALGQRRAESV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            + L + GV  +RI  +S G         ++  +  NRR +
Sbjct: 124 QRALTQLGVPGERIEAVSWGIEKPASLETTEEGHQLNRRAE 164


>gi|117618437|ref|YP_858623.1| outer membrane protein A [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559844|gb|ABK36792.1| outer-membrane protein A [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 368

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F+ + +   P     L  +  +++A +    V ++ GHTD     + A  N  LS  RA
Sbjct: 249 LFEFNKATLKPAASQALDNLFSQIVAANPKDGVATVIGHTD--RIGSDAY-NQALSEQRA 305

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----------PMNSANRRIDILVE 339
            S    L+  G+  D++ ++ G         ++             + +RR+++ +E
Sbjct: 306 RSVADYLIAKGLFADKV-RVEGRGKSSPITGNNCSSGSKPALIACLAPDRRVEVRLE 361


>gi|86160063|ref|YP_466848.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776574|gb|ABC83411.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 412

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
              LP + V+L ++ + L       +++  HTD +     ++   RLS  RA +    L 
Sbjct: 313 DDLLPSSAVLLDELAQALRDRPRLRVAVEVHTDGAGDAAASK---RLSQARAEAVRAALA 369

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             G+  +R+    G        ++      + NRR ++ +  
Sbjct: 370 GRGIEGERVEA-RGIGAEHPIASNKTARGRAQNRRTEVRILP 410


>gi|146985|gb|AAA24233.1| outer membrane protein II [Escherichia vulneris]
          Length = 238

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++         + G+TD     +    N +LS
Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEQY-NQKLS 175

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+  ++IS   G         +  D + +          +RR+ I 
Sbjct: 176 EKRAQSVVDYLVAKGIPANKISA-RGMGESDPVTGNTCDNVKARAALIDCLAPDRRVAIE 234

Query: 338 VE 339
           V+
Sbjct: 235 VK 236


>gi|262171987|ref|ZP_06039665.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus
           MB-451]
 gi|261893063|gb|EEY39049.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus
           MB-451]
          Length = 286

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I E + +++++  + +  +TD++   N +++   LS  RA    + 
Sbjct: 184 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 240

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
               G+ EDRI ++ G+   R    +        NRR+ I +   Q
Sbjct: 241 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 285


>gi|262171113|ref|ZP_06038791.1| outer membrane protein [Vibrio mimicus MB-451]
 gi|261892189|gb|EEY38175.1| outer membrane protein [Vibrio mimicus MB-451]
          Length = 278

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             LEK            L       + ++KRL  L +++    S            F  +
Sbjct: 83  QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142

Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
                +S+I++ N  +     F  +S+   P+ +  L    + L A     +S+ GH D+
Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                 +  N +L++ RA    + L   G++ +RI+  S           +       NR
Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253

Query: 333 RIDILV-------EDRQG 343
           R+ I +         +QG
Sbjct: 254 RVSIEIITADSPNLSKQG 271


>gi|33519799|ref|NP_878631.1| peptidoglycan-associated lipoprotein precursor [Candidatus
           Blochmannia floridanus]
 gi|33504144|emb|CAD83406.1| peptidoglycan-associated lipoprotein precursor [Candidatus
           Blochmannia floridanus]
          Length = 174

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284
           I  +  +NT  F       LP    +L    + L ++    I I GHTD    R     N
Sbjct: 63  IQNLKLKNTIYFSLDQYCVLPIFFEILDLHADFLCNNPLYKIIIEGHTDE---RGTPEYN 119

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
             L   RAY+  + L   GV  ++I  +S +   +      ++   S NRR+ +L
Sbjct: 120 IGLGERRAYAVKKYLQSKGVLSNQIDTVS-YGKEKPIAFGQNEESYSKNRRVVLL 173


>gi|126046419|gb|ABN73094.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    R  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VRGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|19881375|gb|AAM00930.1|AF491822_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341


>gi|77462481|ref|YP_351985.1| OmpA/MotB family outer membrane protein [Rhodobacter sphaeroides
           2.4.1]
 gi|77386899|gb|ABA78084.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides
           2.4.1]
          Length = 701

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 14/235 (5%)

Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167
             S  +     +   +      +   +   + +       T    +G+++    DLE   
Sbjct: 463 PGSEVVTQSFDDGSTRSVVTRADGTQIVTIRDASGRVLRRTAVDGQGREVMLIDDLESYQ 522

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
             + +    P      +  + ++ L+   ++  +    L     ++ +        +  +
Sbjct: 523 AVDVSRLPEPAPVYSFVQTRDQRDLRQALEQTRTR--DLDRTYSLRQIREYREVRALAPA 580

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIAR 282
           I    +   FD  S+   P+    L  +G+ +A        EV  I GHTDA      A 
Sbjct: 581 I--DVDQITFDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAA 635

Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            N  LS  RA S    L +   V  + +  + G+    L++ SD     NRR+ +
Sbjct: 636 SNLALSDRRAESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689


>gi|284039792|ref|YP_003389722.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283819085|gb|ADB40923.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 813

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           SS+       + + +  +  + + +I IR HTD+   R  A  N  LSL RA +    L 
Sbjct: 709 SSLREDAARELDKVVATMRKYPSLIIEIRSHTDS---RGDAERNKALSLQRAKAVAAYLA 765

Query: 301 KSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342
             G+S  R+    G    +L          ++  +  NRR +  V + +
Sbjct: 766 SKGISRKRM-ATLGMGESQLVNNCTDGVICTEAEHQRNRRTEFRVVEIK 813


>gi|146302267|ref|YP_001196858.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146156685|gb|ABQ07539.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 643

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    E  + L+KI +VL  +    + IR HTD+   R   + N  LS  RA S 
Sbjct: 535 FDLDKSNIRTEAALDLEKILDVLNQNPTMKLDIRSHTDS---RASHQYNEALSDRRAKST 591

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              L+++GV+++R++   G+   +L          ++  +  NRR + ++
Sbjct: 592 ISWLIQNGVAKNRLTG-KGYGETQLVNQCSDGVNCTEEEHQMNRRSEFII 640


>gi|87118951|ref|ZP_01074849.1| peptidoglycan-associated lipoprotein OprL [Marinomonas sp. MED121]
 gi|86165342|gb|EAQ66609.1| peptidoglycan-associated lipoprotein OprL [Marinomonas sp. MED121]
          Length = 208

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  PE    L K  + L  + +  + + GH D    R     N  L   RA + 
Sbjct: 107 FDFDKSIVRPEAREALAKHAKFLVANPDARVVLEGHADE---RGTREYNMALGERRAKAV 163

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   GV+  +I  +S F   +         +  ANRR+++
Sbjct: 164 SRYLTIQGVAAAQIESVS-FGEEKPLEFGHDKAAWQANRRVEV 205


>gi|148368|gb|AAA24807.1| outer membrane protein II [Enterobacter aerogenes]
          Length = 238

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 175

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++IS   G         S      P  +       +RR++I 
Sbjct: 176 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGSTCDNVKPRAALIDCLAPDRRVEIE 234

Query: 338 VE 339
           V+
Sbjct: 235 VK 236


>gi|23012822|ref|ZP_00052818.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 278

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    E    L+++           I + GHTD    +    D  +LS  RA + 
Sbjct: 178 FDFNKSTLTKEAQKTLKEVVASAGQIKPSSIYVAGHTDTV-GKAGYND--KLSKARAAAV 234

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            + L K GV     +K  GFA   +   ++   + NRR++I
Sbjct: 235 EKQLAKLGVKSID-AKAFGFAKLAVPTKANTKEAKNRRVEI 274


>gi|260768773|ref|ZP_05877707.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           furnissii CIP 102972]
 gi|260616803|gb|EEX41988.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           furnissii CIP 102972]
          Length = 254

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L+ I E++    ++  + I GH+D+         N  +S  RA  
Sbjct: 150 FQSGVLALTQNQRSQLEAISELVLFDPKIKTVRITGHSDS---HGDTVVNLSVSRRRADD 206

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
               +M +GV  + + +I G          A++    ANRR++I +  R
Sbjct: 207 VAYWMMMAGVPTE-MMEIRGQGGRYPVANNATEEGRLANRRVEIELVRR 254


>gi|206580983|ref|YP_002237058.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|288934021|ref|YP_003438080.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|290510919|ref|ZP_06550288.1| lipoprotein yfiB [Klebsiella sp. 1_1_55]
 gi|206570041|gb|ACI11817.1| OmpA family protein [Klebsiella pneumoniae 342]
 gi|288888750|gb|ADC57068.1| OmpA/MotB domain protein [Klebsiella variicola At-22]
 gi|289775912|gb|EFD83911.1| lipoprotein yfiB [Klebsiella sp. 1_1_55]
          Length = 160

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           ++ +FDK+     P++   +  +   LA +      + GHTD          N  LSL R
Sbjct: 52  DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338
           A S        G    R   ++ G        ++D     + NRR+ +++
Sbjct: 109 ANSVADA-WAEGAHVPRSHLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 157


>gi|188534230|ref|YP_001908027.1| outer membrane protein A [Erwinia tasmaniensis Et1/99]
 gi|188029272|emb|CAO97149.1| Outer membrane protein A [Erwinia tasmaniensis Et1/99]
          Length = 355

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + +   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 227 KSDVLFTFNKASLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  G+   +IS   G         +  D + +          +RR++I 
Sbjct: 284 EKRAQSVVDYLVSKGIPSSKISA-RGEGKSNPVTGNTCDSVKARKALIDCLGPDRRVEIE 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|209695366|ref|YP_002263295.1| peptidoglycan-associated lipoprotein precursor [Aliivibrio
           salmonicida LFI1238]
 gi|208009318|emb|CAQ79584.1| peptidoglycan-associated lipoprotein precursor [Aliivibrio
           salmonicida LFI1238]
          Length = 185

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278
           T   +    + Q  T  F   +S    E   +L      L+ +    +++ GH D    R
Sbjct: 68  TEQEVKEQALRQVQTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGHADE---R 124

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
                N  L   RA +  + L   GVS D+IS +S +   +  +   +    + NRR
Sbjct: 125 GTPEYNIALGERRANAVAKYLQALGVSADQISIVS-YGEEKPLVLGQTAEDYAKNRR 180


>gi|254463477|ref|ZP_05076893.1| OmpA family protein [Rhodobacterales bacterium HTCC2083]
 gi|206680066|gb|EDZ44553.1| OmpA family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 211

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I GHTD+   R     N RLS +RA +   +   +G    R++ + G+       ++   
Sbjct: 143 IAGHTDS---RASDEYNMRLSYNRATTVANIARSAG---ARVADVRGYGERMPVASNKSQ 196

Query: 327 -MNSANRRIDIL 337
              S NRR++I+
Sbjct: 197 VGMSKNRRVEII 208


>gi|50120684|ref|YP_049851.1| outer membrane protein A [Pectobacterium atrosepticum SCRI1043]
 gi|49611210|emb|CAG74656.1| outer-membrane protein A [Pectobacterium atrosepticum SCRI1043]
          Length = 366

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD        + N  LS
Sbjct: 238 KSDVLFNFNKATLKPEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQALS 294

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  +++S   G    +    S      P  +       +RR++I 
Sbjct: 295 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 353

Query: 338 VE 339
           V+
Sbjct: 354 VK 355


>gi|239908713|ref|YP_002955455.1| hypothetical protein DMR_40780 [Desulfovibrio magneticus RS-1]
 gi|239798580|dbj|BAH77569.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1002

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 15/187 (8%)

Query: 158  CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
               T +       +       +    +  +    L  + +K+ +  +   A         
Sbjct: 822  EAQTRILAEFETLKERLAGADAGAAAVRAETAGHLVAVLQKLDALKTSEAAPGPGPAPAT 881

Query: 218  ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASP 276
             T    + I+I        F        P+    + +  + L  +    + + G+TD S 
Sbjct: 882  RTGSGAVKITIP-------FSSEQGSVPPDAAGQIAEAAQRLKAAGVGSVLVIGYTDNSR 934

Query: 277  FRNI----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
             R         N  LS  RA S  + L+K+G+   ++ +I GF        +D       
Sbjct: 935  LRRALLRQYGTNAVLSQARAASVAEGLVKNGIDAGKV-QIHGFGSAMPVSPNDTPFNREK 993

Query: 331  NRRIDIL 337
            NRR++I+
Sbjct: 994  NRRVEII 1000


>gi|254476085|ref|ZP_05089471.1| OmpA family protein [Ruegeria sp. R11]
 gi|214030328|gb|EEB71163.1| OmpA family protein [Ruegeria sp. R11]
          Length = 196

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   PE    L ++  VL+ +      + + GHTD+       + N RLS  RA 
Sbjct: 86  FPFNSNALTPEYEAHLARLAAVLSSAQLQNSCVKLVGHTDSI---GSDQFNMRLSKTRAQ 142

Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
                L ++ GV+ +RI   S      L       +  NRR++IL
Sbjct: 143 RVAAYLALEGGVAMERIQTAS-LGEKHLIKGLPGPHPLNRRVEIL 186


>gi|327402931|ref|YP_004343769.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327318439|gb|AEA42931.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 254

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGH----TDASPFRNIARDNWRLSLDR 291
           F       LP +   +  + E L A  T  I++ GH    TD+            LS  R
Sbjct: 153 FAYGLDAMLPSSYNDIHFLIETLQADKTLFITLAGHVCCGTDSK----------NLSGMR 202

Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
           A    Q+L+  G +S  RI+ I GF + +     D      ANRR++
Sbjct: 203 AERIKQILIMEGSISSSRINAI-GFGNKKPLFEDDTEIHRQANRRVE 248


>gi|119477236|ref|ZP_01617472.1| peptidoglycan-associated lipoprotein OprL [marine gamma
           proteobacterium HTCC2143]
 gi|119449599|gb|EAW30837.1| peptidoglycan-associated lipoprotein OprL [marine gamma
           proteobacterium HTCC2143]
          Length = 175

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   +    +T   L     VL  ++  + + GH D    R     N  L+  RA +  
Sbjct: 77  FDFDQATLSADTREALDSQIAVLNENSNKVRLEGHADE---RGTREYNMALAERRANAIA 133

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
             ++ +GV+  R+  +S +   R     +S+   S NRR+++
Sbjct: 134 NYMIINGVARYRVETVS-YGEERPVSAGSSESSYSENRRVEL 174


>gi|91786622|ref|YP_547574.1| Type I secretion outer membrane protein TolC [Polaromonas sp.
           JS666]
 gi|91695847|gb|ABE42676.1| Type I secretion outer membrane protein, TolC [Polaromonas sp.
           JS666]
          Length = 658

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 21/294 (7%)

Query: 57  TDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIG 116
           + + +++A  Q F    + L+     + D QN   +++++ ++ S D+ I +      +G
Sbjct: 373 STEKSREAYLQQFELGQRTLLD----LLDSQNEYFQANRSYVNASYDQIIAQARTLAGMG 428

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173
                   +R +      +   ++      L    E             ++         
Sbjct: 429 QLVTALNVKRGDVPSAQDAGQDRTGIDPAELCPQDETVVATVDQIKARFAVAPRRTGSYV 488

Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-- 228
                P  S  +++    +        +  + L G V    V  V  E    G  I+   
Sbjct: 489 VLLPNPDNSVGRVVVQGNRGEQTLAQAQQGTLLDGSVKPFEVSKVQVER-DFGAAIAARP 547

Query: 229 -IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286
            + +  T  F + S+     +  V+ +I E+        I++ GHTD       A  N  
Sbjct: 548 PLPESFTLYFQRGSTELTAASKAVMSRIKELAKARKALDITVIGHTDTM---GTAESNEV 604

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           L L RA +  + + + G+    I  +       L +A+  +     NRR +I V
Sbjct: 605 LGLRRANAIAKQMQQLGLRNTAII-VESNGERNLFVATPQNTNEPRNRRAEITV 657


>gi|326568759|gb|EGE18829.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC8]
          Length = 171

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   +L +  + L  + T  + + GHTD    R     N  L   RA + 
Sbjct: 71  FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              L+  G+++  +  IS F   R      ++   S NRR ++
Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169


>gi|320533459|ref|ZP_08034136.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134317|gb|EFW26588.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 490

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 255 IGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISK 311
           +   +A       ++I GHTD          N  LS  RA +    L   +G+ +     
Sbjct: 202 VAGQIAQYPDGGTLTIVGHTDDVQ---DDAYNQALSEKRANTVKTRLGQLTGLDKWN-PS 257

Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           ++G      +++  +D   +ANRR++I +    G
Sbjct: 258 VAGKGESEPRVSGTTDEARAANRRVEITLTPTGG 291


>gi|37704606|gb|AAR01575.1| OprF [Pseudomonas sp. MFY33]
          Length = 316

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+    +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKENSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESTRVQSV-GYGESRPVA 316


>gi|303248654|ref|ZP_07334908.1| peptidoglycan-associated lipoprotein [Desulfovibrio fructosovorans
           JJ]
 gi|302489910|gb|EFL49836.1| peptidoglycan-associated lipoprotein [Desulfovibrio fructosovorans
           JJ]
          Length = 171

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    E+  +L +  E++    +  + + G+ D    R  A  N  L   RA +A
Sbjct: 69  FAFDSSNLTAESRQILTRKAEIMRQYPQIKVIVEGNCDQ---RGTAEYNLALGERRAQAA 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
            Q L   G+  DR+S +S +   R      S+   + NRR
Sbjct: 126 AQYLSNLGIPADRLSTVS-YGKERPLDPGHSEAAYAKNRR 164


>gi|59711533|ref|YP_204309.1| flagellar motor protein MotY [Vibrio fischeri ES114]
 gi|59479634|gb|AAW85421.1| flagellar motor protein MotY [Vibrio fischeri ES114]
          Length = 292

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FDK+S      +   L +I + + ++ +V  + +  +TD+         N ++S  RA  
Sbjct: 186 FDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDS---SGGKNVNQQVSERRALK 242

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G+  DRI ++  +   R    +      + NRR+ I +
Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNATPIGKNKNRRVVISL 287


>gi|224536169|ref|ZP_03676708.1| hypothetical protein BACCELL_01035 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522209|gb|EEF91314.1| hypothetical protein BACCELL_01035 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 396

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 7/143 (4%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID-QRNTP 235
           P    +I     + +L  +  + +   + LV        + E T T +++   D    T 
Sbjct: 239 PQLISQIELAAMQDKLAMMGAQNAELKNALVQAE--NQPVAEVTETQVIVPDPDIAPRTV 296

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   S+   P  I+ L  + E +        ++ G+ D++        N  LSL RA +
Sbjct: 297 FFQIGSAELSPREIMNLSYLAEQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRAQA 354

Query: 295 AYQVLMKS-GVSEDRISKISGFA 316
               L+K+ G++ DR++  +G  
Sbjct: 355 VKNALVKNYGIAADRLNVEAGGG 377


>gi|209809438|ref|YP_002264976.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
 gi|208011000|emb|CAQ81413.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
          Length = 307

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   S         L +    +      I+I GHTD   ++     N  LS  RA S  
Sbjct: 62  FEFDKSELKETDYASLNQFVNSIKRFKGRIAIVGHTD---YQGSVSYNEELSRQRAESIK 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
             L +  V  +   ++  +   R  I       N+ANRR
Sbjct: 119 AYLSEKLVVSNYEWEVKYYGEKRPFIKGRSLEANAANRR 157



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F            V L ++   L   T  I I GHTD   ++     N +L+ +R+ +  
Sbjct: 191 FAFDKDELQNTDKVELDELALKLTGLTGRILIAGHTD---YQGSQSYNEQLAKERSMAVQ 247

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
             L         I +I  F      I    +  N+ANRR
Sbjct: 248 NYLKTKVDPSQFIWEIKSFGEDSPIIEERSLKANAANRR 286


>gi|17230523|ref|NP_487071.1| hypothetical protein all3031 [Nostoc sp. PCC 7120]
 gi|17132125|dbj|BAB74730.1| all3031 [Nostoc sp. PCC 7120]
          Length = 599

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---------TEVISIRGHTDASPFRNIA 281
           +R    F + S   +P  +  L  +   +               I I GHT+ +      
Sbjct: 476 EREIIFFPEGSQEIIPSELSKLNNLVLAIKKLLPIAKYLEKDVHIQIIGHTNTT---GTE 532

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID--IL 337
             N +LS  R+      L   G+S  ++ ++ G +  +      +D     NRR+   ++
Sbjct: 533 SRNAQLSAGRSQRVLSYLSSQGISTSQL-QVLGVSSSQPLQPELTDEGKKFNRRVSFKVI 591

Query: 338 VED 340
           +  
Sbjct: 592 IMR 594


>gi|126461359|ref|YP_001042473.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103023|gb|ABN75701.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 701

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S+   P+    L  +G+ +A        EV  I GHTDA      A  N  LS  R
Sbjct: 588 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 644

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S    L +   V  + +  + G+    L++ SD     NRR+ +
Sbjct: 645 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689


>gi|258625023|ref|ZP_05719945.1| Outer membrane protein [Vibrio mimicus VM603]
 gi|258582691|gb|EEW07518.1| Outer membrane protein [Vibrio mimicus VM603]
          Length = 278

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             LEK            L       + ++KRL  L +++    S            F  +
Sbjct: 83  QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142

Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
                +S+I++ N  +     F  +S+   P+ +  L    + L A     +S+ GH D+
Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
                 +  N +L++ RA    + L   G++ +RI+  S           +       NR
Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253

Query: 333 RIDILV-------EDRQG 343
           R+ I +         +QG
Sbjct: 254 RVSIEIITADSPNLSKQG 271


>gi|187479386|ref|YP_787411.1| peptidoglycan-associated lipoprotein [Bordetella avium 197N]
 gi|115423973|emb|CAJ50526.1| peptidoglycan-associated lipoprotein [Bordetella avium 197N]
          Length = 165

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
           SI+ Q+ +  FD  S     +   +++     LA   +  I I G+TD    R  A  N 
Sbjct: 53  SILAQQRSVYFDFDSYGVSDQYRGLVETHARYLASHPQQRIKIEGNTDD---RGGAEYNL 109

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            L   RA +  +++   GV++ +I  IS G    +   +++   + NRR DI+
Sbjct: 110 ALGQRRADAVRRMMTLLGVADAQIEAISFGKEKPKATGSTEADFAENRRADIV 162


>gi|86130725|ref|ZP_01049325.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85819400|gb|EAQ40559.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 649

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            LSG + + +      +  + G  I+ I   N   FD       P+  + L K+   +  
Sbjct: 505 NLSGEIQEFLQLERAVQIAKPGDDIAKILNLNPIYFDFDKYYIRPDAEIELAKVLVYMET 564

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                I +R HTD+   R     N  LS +R  S    L+  G++  R+S   G+   +L
Sbjct: 565 YPSVRIDVRSHTDS---RGNDEYNRTLSQNRNVSTRDWLIAKGINPSRLSG-RGYGESQL 620

Query: 321 KIA-------SDPMNSANRRIDILVED 340
                     S+  +  NRR + +V  
Sbjct: 621 VNECSNGVQCSEEQHQLNRRSEFIVLS 647


>gi|57238205|ref|YP_178714.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221]
 gi|86149924|ref|ZP_01068153.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|148925958|ref|ZP_01809645.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|283956011|ref|ZP_06373500.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|57167009|gb|AAW35788.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221]
 gi|85839742|gb|EAQ57002.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|145844944|gb|EDK22048.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|283792487|gb|EFC31267.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|315927335|gb|EFV06679.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 317

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++T
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N+ K +  +       I+I ++  +       +FDK S +   E    L+KI       
Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|289549271|ref|YP_003474259.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
 gi|289182888|gb|ADC90132.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484]
          Length = 335

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 12/163 (7%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
             ++ L + +++ L+    K          ++ +        R  +++          F+
Sbjct: 175 EAKRKLEVAKREGLECYVGKREVVKEEEPQESPISTGEKTVEREYLMV-----PARVHFE 229

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            +S     E I +L ++  +L  + +  + I G+TD     +    N +L+  RA +   
Sbjct: 230 FNSYTIKKEYIPLLLEVARILKENPQIRVRIEGYTDN--IGSKEY-NEKLAFKRAKAVAD 286

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            L K GV +D+I  I+GF        +        NRR D +V
Sbjct: 287 FLKKQGVPQDKIE-IAGFGKEGYIAPNTTPIGRFTNRRADFIV 328


>gi|269104382|ref|ZP_06157078.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161022|gb|EEZ39519.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 335

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 237 FDKSS------SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           FD SS      +  +P    + ++           I + G+TD+   +     N +LS  
Sbjct: 222 FDSSSISTGDAAKLVPFEQRLQEQDAA-------QIYVVGYTDS---KGSEAYNQKLSER 271

Query: 291 RAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337
           RA +    L     V   RI     G A       ++   + NRR++I+
Sbjct: 272 RADAVADALRAHLNVDGSRIIAEGRGEADPVASNQTEEGRAQNRRVEIV 320


>gi|331015715|gb|EGH95771.1| ompA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 320

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 98  AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 214 RALNRRVEILMTPQ 227


>gi|197335579|ref|YP_002155689.1| sodium-type flagellar protein MotY [Vibrio fischeri MJ11]
 gi|197317069|gb|ACH66516.1| sodium-type flagellar protein MotY [Vibrio fischeri MJ11]
          Length = 292

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FDK+S      +   L +I + + ++ +V  + +  +TD+         N ++S  RA  
Sbjct: 186 FDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDS---SGGKNVNQQVSERRALK 242

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G+  DRI ++  +   R    +      + NRR+ I +
Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNATPIGKNKNRRVVISL 287


>gi|167619124|ref|ZP_02387755.1| OmpA family protein [Burkholderia thailandensis Bt4]
 gi|257138357|ref|ZP_05586619.1| OmpA family protein [Burkholderia thailandensis E264]
          Length = 209

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L ++   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 86  LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342
               L+  GV  +++    G       I  +     N           RR+++ V   Q
Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199


>gi|289640922|ref|ZP_06473092.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509237|gb|EFD30166.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata]
          Length = 394

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
               F   SS       V L +I  VL  S   + + GH DA   R     N  LSL RA
Sbjct: 288 GRITFATDSSELTEADRVHLDRIAAVLRESELSVLLAGHADA---RGPGVLNETLSLARA 344

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            +A   L   GVS D + + +GFA        A++   +ANRR++I
Sbjct: 345 RAAAAYLADQGVSADHL-RAAGFASEHPVATNATEAGRAANRRVEI 389


>gi|255101058|ref|ZP_05330035.1| hypothetical protein CdifQCD-6_09624 [Clostridium difficile
           QCD-63q42]
          Length = 210

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249
           S ++SG V  ++ K V    E T     I + +D+ N         MFD  S +  PE  
Sbjct: 40  SESISGSVEQDLAKNVNASVEETFKKSGIPVKVDKSNGQVTFGEKTMFDIDSDVLKPEAK 99

Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            +L+         +     + IS   I GHTD          N  LS  RAYS  + ++ 
Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156

Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336
             + +    D+++K I      + ++  +  NS N    RR+++
Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200


>gi|330971005|gb|EGH71071.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217

Query: 270 GHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326
           GH D + P       N ++S +RA S   +   SG+  +R+S+  G      + A+D   
Sbjct: 218 GHADTSGPIEA----NQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQ 272

Query: 327 MNSANRRIDILVEDR 341
             + NRR++IL+  +
Sbjct: 273 GRALNRRVEILMTPQ 287


>gi|205355449|ref|ZP_03222220.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346683|gb|EDZ33315.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 317

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++T
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N+ K +  +       I+I ++  +       +FDK S +   E    L+KI       
Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKTSLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|38422322|emb|CAE45324.1| unnamed protein product [Magnetospirillum gryphiswaldense]
 gi|144897900|emb|CAM74764.1| Outer membrane protein and related peptidoglycan-associated (lipo)
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 163

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           I +  +   FD        +    L K    L       ++I GH D    R     N  
Sbjct: 52  IANVGDRVFFDFDKYALRADAKGSLDKQAAWLKKYPTYSLTIEGHADE---RGTREYNLA 108

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           L   RA S  + L+ +GV   R+  IS G        +++   S NRR
Sbjct: 109 LGERRANSVKEYLVGAGVPAARVKTISYGKERPVALGSNEAAWSQNRR 156


>gi|163731712|ref|ZP_02139159.1| hypothetical protein RLO149_20449 [Roseobacter litoralis Och 149]
 gi|161395166|gb|EDQ19488.1| hypothetical protein RLO149_20449 [Roseobacter litoralis Och 149]
          Length = 344

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 108/349 (30%), Gaps = 67/349 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +           S  I   D    ++   L++                   P     ++ 
Sbjct: 5   RHHARYGDEEDESAFISMTDMTVSILFIVLILLAF----------FASQLRPEQTVTVSE 54

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
            + +  +    ER +Q ++  S  E  T  ++D+      ++   +         + + +
Sbjct: 55  YERVVAQ--LDEREAQLRVAQSAIEDWTDGTLDVATLLRLREDVLRLTTEVTNLQARAGR 112

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           SE  +  +    E+         L +          P       +A +R+  L  L  +I
Sbjct: 113 SEDLEQDIVVLREELNRARTQLSLIEVN--------PLEMYNSSVAQERENLLTSLRDQI 164

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +     L       GV     +  +           +F   S      + + +++I +++
Sbjct: 165 AEEFPEL-------GVRVSDGKDALQFQ-----GEGLFASGSPRLSAGSQIKIERIADLI 212

Query: 260 AHS----------------------TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                                     E + I GHTD+      A  N  LS  RA + Y 
Sbjct: 213 HAVLPCYTMGPQSAYDAQCNPSFAIVEALQIEGHTDS---DGSANANVSLSSQRAATTYG 269

Query: 298 VLMKS--GVSEDR------ISKISGFAHHRL--KIASDPMNSANRRIDI 336
            ++    G++  +      +  ++G+   R     +S    SANRRID+
Sbjct: 270 AMISHQPGLNIHQNFTDQPVLSVAGYGEDRPVTLNSSPEGKSANRRIDL 318


>gi|332534626|ref|ZP_08410458.1| putative component of sodium-driven polar flagellar motor
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035906|gb|EGI72387.1| putative component of sodium-driven polar flagellar motor
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 292

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283
           S  D   T M +  +SS     +   L KI E L +    E ISI  +TD+        +
Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDASIESISIDSYTDSY---GGRWN 233

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           N  LS  RA +    ++  GV E ++ + +G    R    +D       NRR+ I +E
Sbjct: 234 NLDLSRKRAKTIKDYMVSLGVDEAKV-QTTGLGEKRFVDNNDNILGRDKNRRLIIQIE 290


>gi|257469789|ref|ZP_05633881.1| putative autotransporter protein [Fusobacterium ulcerans ATCC 49185]
          Length = 1198

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 232  RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
            +N   FD+SS     +   V++KI E +  +++   ++I GHTD+         N +LS 
Sbjct: 1091 KNHFSFDESS--LTEDGKKVIRKISEEIDKNSKRGILTIEGHTDS--IGTTEY-NQKLSE 1145

Query: 290  DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
             RA S  +   ++ +  +   +  G+   R    +      + NRR+DI
Sbjct: 1146 KRAESVEKEFKEN-LKTEIKYETKGYGKSRPVADNKIAEGRAKNRRVDI 1193


>gi|255020134|ref|ZP_05292204.1| peptidoglycan-associated outer membrane lipoprotein
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970427|gb|EET27919.1| peptidoglycan-associated outer membrane lipoprotein
           [Acidithiobacillus caldus ATCC 51756]
          Length = 193

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S         +  +  + ++ H+   + + G+TD    R     N  L   RA + 
Sbjct: 86  FGFNSDSLDARAQEIASQNAQFMMNHAHVKVRLEGNTDD---RGTQEYNLALGERRAEAV 142

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L   GVS  RIS +S F         +  +  + NRR+D +
Sbjct: 143 KRYLEAQGVSAARISTVS-FGKDNPLCNQNDESCWAKNRRVDFV 185


>gi|90426219|ref|YP_534589.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90108233|gb|ABD90270.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 166

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L K  + L        +I GH D    R     N  L   R
Sbjct: 58  DRVFFESDQTDLSPQAIATLDKQAQWLQSYNRYSFTIEGHADE---RGTREYNIALGARR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 115 AQSVRTYLTSRGIDSSRMRTIS-YGKERPVAVCNDISCWSQNRR 157


>gi|301384367|ref|ZP_07232785.1| ompA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302133682|ref|ZP_07259672.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 320

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 98  AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 214 RALNRRVEILMTPQ 227


>gi|1171900|sp|P45996|OMP53_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; AltName:
           Full=Fimbrin; Flags: Precursor
 gi|305373|gb|AAA24959.1| fimbrial protein [Haemophilus influenzae]
          Length = 359

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+T  +   + A +  +LS +RA S 
Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSRKVAVAGYT--NRIGSDAFNV-KLSQERADSV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355


>gi|70732082|ref|YP_261838.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens Pf-5]
 gi|68346381|gb|AAY93987.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens Pf-5]
          Length = 165

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GVS  ++  +S      +    D  + + NRR+++
Sbjct: 123 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 163


>gi|317064019|ref|ZP_07928504.1| autotransporter protease [Fusobacterium ulcerans ATCC 49185]
 gi|313689695|gb|EFS26530.1| autotransporter protease [Fusobacterium ulcerans ATCC 49185]
          Length = 805

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289
           +N   FD+SS     +   V++KI E +  +++   ++I GHTD+         N +LS 
Sbjct: 698 KNHFSFDESS--LTEDGKKVIRKISEEIDKNSKRGILTIEGHTDS--IGTTEY-NQKLSE 752

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            RA S  +   ++ +  +   +  G+   R    +      + NRR+DI
Sbjct: 753 KRAESVEKEFKEN-LKTEIKYETKGYGKSRPVADNKIAEGRAKNRRVDI 800


>gi|111220228|ref|YP_711022.1| hypothetical protein FRAAL0749 [Frankia alni ACN14a]
 gi|111147760|emb|CAJ59419.1| Putative outer membrane protein [Frankia alni ACN14a]
          Length = 186

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +FD +SS    E +  LQ++   +      IS+ G++D         DN +LSL+RA S 
Sbjct: 89  LFDSNSSELRGEAMTALQQVLPAIREHPGPISVIGYSDGL---GRTEDNQKLSLERAKSV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
              L    +    +  + G             +++ RR++I++
Sbjct: 146 EAWLATQNIPSS-VLDVEGRGEQ--GAQDGVADASRRRVEIVL 185


>gi|300790394|ref|YP_003770685.1| OmpA family protein [Amycolatopsis mediterranei U32]
 gi|299799908|gb|ADJ50283.1| OmpA family protein [Amycolatopsis mediterranei U32]
          Length = 242

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  ++   P+     + +   LA +       + GH    P         +LS DRA +
Sbjct: 145 FEPDTAKLTPDGEQAARSVAIALAKAPAGFRYRVTGHVARGP--GGESAALKLSRDRARA 202

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             ++L  +G++  R++   G    R     +      RR++I V
Sbjct: 203 VARILTTNGLTVARVT-YRGLGDTRPATGGEED----RRVEITV 241


>gi|124004937|ref|ZP_01689780.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
 gi|123989615|gb|EAY29161.1| peptidoglycan-associated cytoplasmic membrane protein, putative
           [Microscilla marina ATCC 23134]
          Length = 693

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S     E    L+K+   L  + +  + + GH D +        N +LS DRA  
Sbjct: 581 FFDYKSDNIKKEHEKDLEKLVSYLISNPDANLVLNGHADQT---GTETRNKQLSSDRARK 637

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
             + L+   ++ +R++ +  +   +L     ++   + NRR++
Sbjct: 638 VMEYLIGRDINPNRVT-LKAWGEQKLIDKRDNEKGRARNRRVE 679


>gi|86136016|ref|ZP_01054595.1| OmpA family protein [Roseobacter sp. MED193]
 gi|85826890|gb|EAQ47086.1| OmpA family protein [Roseobacter sp. MED193]
          Length = 188

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F              L++       +     I GHTD+   R     N RLS  RA + 
Sbjct: 88  FFATDKHYISAAGKTRLKEFFNSNKGNVRSFVIAGHTDS---RASDEYNIRLSQRRANAV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
             V    G    RI+ I  +     ++ +   +  + NRR++I
Sbjct: 145 AGVAKSVG---ARIADIRAYGERDPRVPNTSASNMAQNRRVEI 184


>gi|88597019|ref|ZP_01100255.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562250|ref|YP_002344029.1| putative OmpA family membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88190708|gb|EAQ94681.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359956|emb|CAL34745.1| putative OmpA family membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925860|gb|ADC28212.1| putative OmpA family membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928819|gb|EFV08086.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 317

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++T
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N+ K +  +       I+I ++  +       +FDK S +   E    L+KI       
Sbjct: 157 ENLSKELQSKLDNN---ITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|58422903|gb|AAW73251.1| OmpA [Serratia sp. MF 416]
          Length = 225

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F  + +   PE    L ++   L+        + + G TDA      A  N RLS  RA
Sbjct: 119 LFAFNKATLKPEGQHALDQLYTQLSSLDPKDGSVVVLGFTDAV---GSAEYNLRLSEQRA 175

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            S    L+  G+  D+IS   G          
Sbjct: 176 QSVVDYLISKGIPSDKISA-RGMGKANPITGD 206


>gi|54302262|ref|YP_132255.1| putative outer membrane protein [Photobacterium profundum SS9]
 gi|46915683|emb|CAG22455.1| putative outer membrane protein [Photobacterium profundum SS9]
          Length = 196

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +     +F   S+      +  +Q++ + L    E  I ++G+  ASP  N    N  LS
Sbjct: 70  ENDVRVLFANDSAAIPEAFLSEIQRMADFLEIYPETYIELKGY--ASPVGNAEY-NIGLS 126

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
             RA    + L+  GV+  RI  I GF       A  S+  N+ +RR+
Sbjct: 127 KRRATKVREQLIAEGVAPQRIKTI-GFGDAEPIAAESSEATNTLSRRV 173


>gi|197335718|ref|YP_002155279.1| outer membrane protein [Vibrio fischeri MJ11]
 gi|197317208|gb|ACH66655.1| outer membrane protein [Vibrio fischeri MJ11]
          Length = 219

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             +F+         +  +LQ + E L    + + + GHTD    +     N  L L R+ 
Sbjct: 111 RVLFNFDQYSLTERSKYILQNVTEKLETQKDTVLLNGHTDN---KGRDNYNINLGLARSN 167

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           S    L+  G S++++   S F   +    +  +     NRR+DI
Sbjct: 168 SVKAFLLDQGASKEQLESYS-FGEQQPIDDNTTLEGQHHNRRVDI 211


>gi|148546407|ref|YP_001266509.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148510465|gb|ABQ77325.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 325

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+    +  K+++T +  K     +S+         ++         KI     +  
Sbjct: 36  PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 95

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +   K+   +     +   +  +   T   + +      + P      ++ LP ++  
Sbjct: 96  LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + ++ + +    +  + + GH D+      A  N +LSL+RA S   +   SG+  DR++
Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 203

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            + G      + A+D     + NRR+++L+  +
Sbjct: 204 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 235


>gi|332560366|ref|ZP_08414688.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
 gi|332278078|gb|EGJ23393.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N]
          Length = 701

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S+   P+    L  +G+ +A        EV  I GHTDA      A  N  LS  R
Sbjct: 588 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 644

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S    L +   V  + +  + G+    L++ SD     NRR+ +
Sbjct: 645 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689


>gi|254507025|ref|ZP_05119163.1| outer membrane protein [Vibrio parahaemolyticus 16]
 gi|219550020|gb|EED27007.1| outer membrane protein [Vibrio parahaemolyticus 16]
          Length = 204

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLS 288
           +++   +F   S    P     ++ + E L  + +  I I+G   AS   +    N  LS
Sbjct: 78  ERQLRILFANDSYEINPIFSDQIKTMAEFLQKYQSASIQIQGF--ASKVGSPEY-NLALS 134

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
             RA++    L+   V   R+  I G+   RL+     +  ++ NR++ 
Sbjct: 135 RKRAHAVQDELISFDVDPSRV-SIVGYGETRLEAEGDDETSHALNRKVT 182


>gi|114765730|ref|ZP_01444828.1| peptidoglycan-associated lipoprotein [Pelagibaca bermudensis
           HTCC2601]
 gi|114541947|gb|EAU44982.1| peptidoglycan-associated lipoprotein [Roseovarius sp. HTCC2601]
          Length = 174

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S   PE    L      L  +++ ++ I GH D          N  L   R
Sbjct: 64  DRVLFLVDQSSLTPEAQATLDAQAGWLMTNSDYLAVIEGHADEQ---GTREYNIALGARR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337
           A +  + L+  GV+ +R+  IS +   R     + +   + NRR + ++
Sbjct: 121 ANATMEYLISKGVAPNRLKIIS-YGKERPVEICSEESCYAKNRRAVTVI 168


>gi|39934198|ref|NP_946474.1| OmpA/MotB [Rhodopseudomonas palustris CGA009]
 gi|192289724|ref|YP_001990329.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris
           TIE-1]
 gi|39648046|emb|CAE26566.1| omp16 protein [Rhodopseudomonas palustris CGA009]
 gi|192283473|gb|ACE99853.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris
           TIE-1]
          Length = 165

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   S   P+    L K  + L   +    +I GH D    R     N  L   R
Sbjct: 57  DRVFFESDQSDLSPQAAATLDKQVQWLQTYSRYTFTIEGHADE---RGTREYNIALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+   R+  IS +   R     + ++  S NRR
Sbjct: 114 AQSVRNYLVSRGIDAQRMRTIS-YGKERPVAVCNDISCWSQNRR 156


>gi|8928233|sp|Q9S3P9|MOTY_VIBAN RecName: Full=Sodium-type flagellar protein motY; AltName:
           Full=Polar flagellum motor protein; Flags: Precursor
 gi|5802659|gb|AAD51752.1|AF176946_1 polar flagellum motor protein [Listonella anguillarum]
          Length = 293

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKI 255
           ++I   LS ++       V  +     +  S  D   T + +D+ +      +   L +I
Sbjct: 147 QRIEVALSSVLFQEKY-NVFSDCVSNLLTYSFEDISFTILHYDRDNVQLNKASQKRLAQI 205

Query: 256 GEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
            + +      +++ +  +TD+   R +++    LS  RA          G+ EDRI ++ 
Sbjct: 206 ADYIRYNQDIDLVLVSTYTDSVDSRGVSQ---DLSERRAEVLRDYFKSLGLPEDRI-QVQ 261

Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338
           G+   R    +        NRR+ I +
Sbjct: 262 GYGKRRPIADNASPIGKDKNRRVVISL 288


>gi|209695330|ref|YP_002263259.1| sodium-type flagellar protein MotY precursor [Aliivibrio
           salmonicida LFI1238]
 gi|208009282|emb|CAQ79548.1| sodium-type flagellar protein MotY precursor [Aliivibrio
           salmonicida LFI1238]
          Length = 292

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FDK+S      +   L +I + + ++ ++  + +  +TD+         N ++S  RA  
Sbjct: 186 FDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDS---SGAKNVNQQVSERRAVK 242

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G+  DRI ++  +   R    +      + NRR+ I +
Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNSTPIGKNKNRRVVISL 287


>gi|134095585|ref|YP_001100660.1| putative peptidoglycan-associated lipoprotein (pal) [Herminiimonas
           arsenicoxydans]
 gi|133739488|emb|CAL62539.1| putative peptidoglycan-associated lipoprotein precursor pal-like
           [Herminiimonas arsenicoxydans]
          Length = 167

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   V+    + L ++ T  I I+G+TD    R  A  N  L   RA + 
Sbjct: 67  FDYDSYVVKPEYQQVVANHAKYLQSNRTRKIIIQGNTDE---RGGAEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV E ++  +S G    +   + +   + NRR DI+
Sbjct: 124 RKSLSLLGVPESQMEAVSLGKEKPKALGSDEAAWAENRRADIV 166


>gi|332304548|ref|YP_004432399.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171877|gb|AEE21131.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 368

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +++    +F  +SS         ++     +         I G+  AS       + W L
Sbjct: 249 VEETLRILFANNSSEIANRANSDIRDFAAFMKRFPSTDTVIEGY--ASAPGESDYNQW-L 305

Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334
           S +RA +   VL++   +   RI+ + G+   +L  A     +   NRRI
Sbjct: 306 SEERAKAVRMVLIEDYDIKPARITAV-GYGESKLLDAPTAKEANKINRRI 354


>gi|327399144|ref|YP_004340013.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411]
 gi|327181773|gb|AEA33954.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411]
          Length = 188

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   +L +I   +L H T  + I G+ D    R     N  L   RA +A + L+  
Sbjct: 92  INEKPKAILDRIAAFMLKHPTLKVRIEGNCDE---RGTVEYNLALGQKRALAAKKYLVAK 148

Query: 303 GVSEDRISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341
           GV+ DRI  IS +   R    + +    + NRR   ++ +R
Sbjct: 149 GVNPDRIDIIS-YGESRPLDPAHNEYAWAKNRRDHFVLLER 188


>gi|325955198|ref|YP_004238858.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437816|gb|ADX68280.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 753

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   SI        L K+  +L  +      I GHTDA         N  LS  RA++ 
Sbjct: 643 FNFDQSIIRDHDFSFLDKLALLLVDNPTVNFIIEGHTDA---AGTESYNLTLSEKRAFAV 699

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDI 336
            Q L   GV   R+  I G     +K     P        N  NRR+ I
Sbjct: 700 AQYLEGKGVDFSRMH-ILGIGTSAMKYPECKPVEMCEEWKNFENRRVVI 747


>gi|313497490|gb|ADR58856.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 325

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+    +  K+++T +  K     +S+         ++         KI     +  
Sbjct: 36  PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 95

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +   K+   +     +   +  +   T   + +      + P      ++ LP ++  
Sbjct: 96  LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + ++ + +    +  + + GH D+      A  N +LSL+RA S   +   SG+  DR++
Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 203

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            + G      + A+D     + NRR+++L+  +
Sbjct: 204 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 235


>gi|221638345|ref|YP_002524607.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221159126|gb|ACM00106.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 696

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S+   P+    L  +G+ +A        EV  I GHTDA      A  N  LS  R
Sbjct: 583 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 639

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S    L +   V  + +  + G+    L++ SD     NRR+ +
Sbjct: 640 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 684


>gi|187924070|ref|YP_001895712.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187715264|gb|ACD16488.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 204

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD ++    PE+   +QK+  VLA      + + GHTD          N RLS+ RA +
Sbjct: 103 LFDSAT-ELAPESAATVQKLKTVLATWPAPQLVVVGHTD---LAGSQEFNDRLSMQRAQT 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
               L+K G+   RI   +        + +        NRR  I ++
Sbjct: 159 VAAFLIKQGIPAQRIETAA-RGKREPLVPTADGVPHRMNRRAVITIQ 204


>gi|91794083|ref|YP_563734.1| OmpA/MotB [Shewanella denitrificans OS217]
 gi|91716085|gb|ABE56011.1| OmpA/MotB [Shewanella denitrificans OS217]
          Length = 373

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
              + +FD  SS+  P     ++ +   L       + I GH  AS        N  LS 
Sbjct: 256 DLGSILFDNDSSVIKPGAYSDVEILVSHLEKYPQHTVVIEGH--ASNVGTPDY-NLLLSE 312

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            RA +   ++     ++  RI  + G+   + ++A +   +   NRRI+ +V
Sbjct: 313 RRANAVAALVTSKYKINGSRIKSV-GYGLTKPQMAGNSAEAHRLNRRIEAIV 363


>gi|91978605|ref|YP_571264.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91685061|gb|ABE41363.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 165

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +GL AD  +       ++   ++++ D      F+   +   P+    L K  + L  + 
Sbjct: 31  TGLGADGAMASAATPGSQQDFVVNVGD---RVFFESDQTELSPQAAATLDKQAQWL-QTY 86

Query: 264 EV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
                +I GH D    R     N  L   RA S    L   G+   R+  IS +   R  
Sbjct: 87  NRYSFTIEGHADE---RGTREYNIALGARRAQSVRNYLSSRGIEPSRMRTIS-YGKERPV 142

Query: 322 IASDPMN--SANRR 333
              + ++  S NRR
Sbjct: 143 AVCNDISCWSQNRR 156


>gi|330966520|gb|EGH66780.1| ompA family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 320

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 98  AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 214 RALNRRVEILMTPQ 227


>gi|330446544|ref|ZP_08310196.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490735|dbj|GAA04693.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 325

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS         L    + L       I + GHTD+   R     N +LS  RA + 
Sbjct: 210 FAFDSSTITAGDAAKLAPFEQRLKDQGAAQIYVIGHTDS---RGSEAYNQKLSEKRAQAV 266

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337
              L +   V E RI    G        ++  +   + NRR+DI+
Sbjct: 267 ADALRQHLNVGETRIIA-QGRGESDPVASNQTEEGRAQNRRVDII 310


>gi|296284884|ref|ZP_06862882.1| outer membrane protein [Citromicrobium bathyomarinum JL354]
          Length = 210

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +      +  L  + +       E + +RGH+DA       R N R+S +RA + 
Sbjct: 63  FGAGGTELDETAMAELNGLLDTDQWKQVERVILRGHSDA---GGPDRVNMRVSEERAQAV 119

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--------IASDPMNSANRRIDILVEDRQG 343
              LM+ G++ED+I +I  F                ++   +ANRR++I +   +G
Sbjct: 120 ADWLMEQGLTEDQI-RIIAFGAQNPVQPNLLPNGEPNERGRAANRRVEITILVPKG 174


>gi|294669045|ref|ZP_06734131.1| putative cytochrome c oxidase, subunit II [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291309037|gb|EFE50280.1| putative cytochrome c oxidase, subunit II [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 241

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +   P     L+ +  V A   + I + G+ D++     A+ N  LS  RA++  
Sbjct: 149 FATGKADVAPGAQEALKDVL-VAALGGKKIVVSGYHDST---GNAQVNEELSKQRAFAVR 204

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            VL+  GV + +I         +         +  RR+++ VE
Sbjct: 205 TVLLGFGVPDKQIEL------RKPSDTEAGSGAEARRVEVFVE 241


>gi|149186387|ref|ZP_01864700.1| hypothetical protein ED21_22898 [Erythrobacter sp. SD-21]
 gi|148829976|gb|EDL48414.1| hypothetical protein ED21_22898 [Erythrobacter sp. SD-21]
          Length = 288

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 12/170 (7%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
            S  +  AM R    Q  A+  +   +   A   +KG +    +  +            F
Sbjct: 123 ASDMETAAMIRGATQQQFAEHRADIDANAAAAEALKGRMANIDQYNVR-----GVTNVYF 177

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D       PE    +  I          +  + G+TD+         N  LS  RA    
Sbjct: 178 DSGKWNISPEGQREICDIASQAEAMDNALLLVVGYTDSD---GNEDYNQVLSERRAGRVV 234

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
             L +  G    R+   +G +       +      + NRR+ + +   + 
Sbjct: 235 NYLQQKCGWQPWRMLTPTGMSESDPAADNSTPEGKAQNRRVSVNILVSKA 284


>gi|301597288|ref|ZP_07242296.1| OmpA/MotB domain protein [Acinetobacter baumannii AB059]
          Length = 216

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           +  Q L +      S L  +   + ++       +   II+      F+  S++      
Sbjct: 117 QSFQSLVQPPYQLFSQLSVNQAEQKII----DDALKNRIIE------FESGSAVLTEAGQ 166

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            +L ++   L       + I GHTD+      A  N +LS DRA +    L+ 
Sbjct: 167 KILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAVKNYLIS 216


>gi|283782103|ref|YP_003372858.1| OmpA/MotB domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283440556|gb|ADB18998.1| OmpA/MotB domain protein [Pirellula staleyi DSM 6068]
          Length = 261

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272
           +       R G   +I        F + S+    +  V L    E  A   + I +RGHT
Sbjct: 102 ENQHVRIVRPGDRTTI---GTVVYFSEDSATLSEDAEVDLLGAAETFAGKPQKIELRGHT 158

Query: 273 -DASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMN 328
              +P   ++ +DNW L+  R+ +   VL+    +   RI   ++G              
Sbjct: 159 SRGTPAADSVFKDNWELAYKRSLAVMHVLVDRMKIDPKRIRISVAGPFEPVHTGIDPEKL 218

Query: 329 SANRRIDILVED 340
             N R+++ + +
Sbjct: 219 KQNPRVEVFLLE 230



 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 19/224 (8%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNP--FGKNLMTAS 80
           +D P  +  W + + D M++L+ FF+++  ++     D  + +    +      + M+  
Sbjct: 5   EDPPAGIPEWVVTFGDMMSLLLTFFILLASMSEIKQNDKFQGVADSMHEQFGYDSSMSHV 64

Query: 81  KGIFDEQNPP-------ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
            G    +N          R+ + K+     +       +  +       +        F 
Sbjct: 65  PGEMSPRNSSMAAMALTGRAKRAKVVQGGVKSKGTTGENQHVRIVRPGDRTTIGTVVYFS 124

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---- 189
             ++  SE  +  L   +E      +  +L    ++              LA KR     
Sbjct: 125 EDSATLSEDAEVDLLGAAETFAGKPQKIELRGHTSRGTPAADSVFKDNWELAYKRSLAVM 184

Query: 190 ----KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
                R++   K+I  +++G   + +  G+  E  +    + + 
Sbjct: 185 HVLVDRMKIDPKRIRISVAGPF-EPVHTGIDPEKLKQNPRVEVF 227


>gi|75676898|ref|YP_319319.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74421768|gb|ABA05967.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 167

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L+K    L        +I GH D    R     N  L   R
Sbjct: 59  DRVFFESDQTSLSPQAITTLEKQAHWLQTYHRYSFTIEGHADE---RGTREYNIALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 116 AQSVRSFLASRGIDPSRMRTIS-YGKERPVAVCNDISCWSQNRR 158


>gi|329849877|ref|ZP_08264723.1| ompA family protein [Asticcacaulis biprosthecum C19]
 gi|328841788|gb|EGF91358.1| ompA family protein [Asticcacaulis biprosthecum C19]
          Length = 254

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSL 289
                F   S+    ++  +L  I   +    + +  S+ G+TD         DN +LS 
Sbjct: 139 DRRLQFISGSAELTGDSQAILIDIYNTIQTCPQNLALSVEGYTDNV---GQDNDNMKLST 195

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            RA +A   L+  G+++  +S   G+        +  +   + NRR+D ++  R
Sbjct: 196 ARAEAAAFALIDLGLAQASVSS-RGYGAQNPIADNTSEDGRARNRRVDFILRPR 248


>gi|308126356|ref|ZP_07663725.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109333|gb|EFO46873.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
          Length = 290

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L+       + I GH D          N  +S  RA  
Sbjct: 162 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHADNV---GPRLTNLSVSRLRAQQ 218

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L+  GV+ + I ++           ++     + NRR+ +
Sbjct: 219 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 261


>gi|297537840|ref|YP_003673609.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297257187|gb|ADI29032.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 261

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +    L    + L   +     I G++D    R     N  LS  RA + 
Sbjct: 166 FDTGKTTLPSDASQTLAATIKWLKAYSSMKAVISGYSDP---RGDLAKNEELSKSRAKAV 222

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339
            ++L  +G+ EDRI         + +I     +  A RR+++ +E
Sbjct: 223 REMLEDAGIDEDRIEM------RKPEIVESGGDLGAARRVEVSIE 261


>gi|188997203|ref|YP_001931454.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932270|gb|ACD66900.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 260

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 103/284 (36%), Gaps = 32/284 (11%)

Query: 61  TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTN 119
            KK I   F      ++  +  +F EQN      Q + D   ++H  + +  +  I  + 
Sbjct: 2   KKKIITSTF------ILAFTSNVFAEQNVDMSKIQERFDKLKEKHALECSPEEYGILESY 55

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            +        ++  L    + E     + ++    KD       ++            + 
Sbjct: 56  LESIKIENNQSVDSLRLITKIEDLLTKIKKNINSDKDNDGIPCYKEIELGLNPKIPDAIE 115

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           K KI   K+ ++L   AK+  S  +    D I + V                     F  
Sbjct: 116 KAKIAQNKKPEKLDIGAKEKESPKTYKSTDAITQPVRVH------------------FYL 157

Query: 240 SSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           +SS    E +  L  + + L       + I+G+TD     +   ++ +L+L RA +  Q 
Sbjct: 158 NSSKIKKEYLPYLNIVAKYLKTHPDVKVKIKGYTDN--IGSKKYND-KLALKRAKTVKQY 214

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           L+K GVS +RI  I G       ++++       NRR +  + +
Sbjct: 215 LVKLGVSPNRIM-IDGVGKSEYIVSNNNELDRFTNRRAEFYIIN 257


>gi|259416355|ref|ZP_05740275.1| outer membrane protein, OmpA/MotB family [Silicibacter sp.
           TrichCH4B]
 gi|259347794|gb|EEW59571.1| outer membrane protein, OmpA/MotB family [Silicibacter sp.
           TrichCH4B]
          Length = 624

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  SS+  PE    L  +G  L    +     V  I GHTDA      A  N  LS  R
Sbjct: 512 FETGSSVIRPEQAEELTDLGNALRQMVDTNPTEVFLIEGHTDAV---GAATYNLALSDRR 568

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +    L +   V  + +  I G+    L +       ANRR+ +
Sbjct: 569 AETVALALTEYFDVPPENMV-IQGYGESDLAVPVLDAERANRRVTV 613


>gi|149377601|ref|ZP_01895340.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
 gi|149358143|gb|EDM46626.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Marinobacter algicola DG893]
          Length = 148

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
               + + +L++    L H+  V + I GH D   F     +++ LS  RA SA +VL++
Sbjct: 48  RLDEQDLAILRQHALYLRHNPGVTVRIHGHADN--FGVSEYNHF-LSRLRASSAAKVLIR 104

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            GV E ++  +SG+   R     +  ++ANRR+++
Sbjct: 105 EGVRESQVL-VSGWGSDRPLARPE-DHAANRRLEL 137


>gi|21223388|ref|NP_629167.1| secreted protein [Streptomyces coelicolor A3(2)]
 gi|8218177|emb|CAB92608.1| putative secreted protein [Streptomyces coelicolor A3(2)]
          Length = 203

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 19/186 (10%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
             D    T+   S   E +   P L       + + K L      I S +     D   +
Sbjct: 27  AADDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVEEQSGDERRE 81

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHT 272
                 T        +  +   +F K SS    E    ++ I  E+   +   + + G T
Sbjct: 82  DTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRTQNATRVRVFGFT 133

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330
           D     +   D   LS  RA + + VL +S        ++ G+        +        
Sbjct: 134 DDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIADNSTEAGRKK 190

Query: 331 NRRIDI 336
           NRR+++
Sbjct: 191 NRRVEV 196


>gi|320095241|ref|ZP_08026939.1| outer membrane protein OprF [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977825|gb|EFW09470.1| outer membrane protein OprF [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 174

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S         VL  +  E        +++ GHTD+         N  LS  RA + 
Sbjct: 73  FEVDSDQLTARAKEVLDSLASEWSKAKPSTVTVTGHTDSVA---DDAHNLDLSKRRAKAV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              L  +G          G           ++   + NRR++I
Sbjct: 130 GDYL--AGKVPGLSLTTDGKGEAEPIGDNETEEGRAQNRRVEI 170


>gi|299067718|emb|CBJ38927.1| Peptidoglycan-associated lipoprotein, protein pal, component of
           tol-pal system [Ralstonia solanacearum CMR15]
          Length = 171

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 71  FDFDSYAVKPEYQGLLTQHAHYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 127

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 128 RRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIV 170


>gi|332669626|ref|YP_004452634.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332338664|gb|AEE45247.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484]
          Length = 517

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 15/262 (5%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           +F+  + P  S    +D        +  V         +             +++     
Sbjct: 89  VFENLSSPGPSGVRLVDTE------EGVVRPVARDELDRAVMSGNSTPGGPATDAGDEAA 142

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
             + +   +    D  +   +        +  + P     +L +  ++  +         
Sbjct: 143 DGDEVVYAAFAAPDAGRVDVMLPQGGWVADVPVVPADDAGVLTVPPEELAEGGVADAPVV 202

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                 + +   V    T   + + +       +F   S +  PE    L      +   
Sbjct: 203 PLEAYTEVVGGTVRARQTPEAVTVQVASD---VLFAVDSDLLGPEAEAALAAAAAQVTAY 259

Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               +++ GHTD     + A  N  LS  RA +    L +          +      +  
Sbjct: 260 PGGTLTVVGHTDD--VADDAY-NLDLSQRRAATVAARLAQVADLSGFDVTVDAKGESQPA 316

Query: 322 IA--SDPMNSANRRIDILVEDR 341
           +A  S    + NRR++I++  +
Sbjct: 317 VAGTSPDARALNRRVEIVLVPQ 338


>gi|283954121|ref|ZP_06371646.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794400|gb|EFC33144.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 317

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 118/322 (36%), Gaps = 54/322 (16%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNRQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++      Q+ E      S  Q S+   ++L 
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS------QKAELEANITSYKQLSKDLNSTLD 115

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                     K   +     ++++  L  L ++   A ++ + L  + + +S  L   + 
Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLSKELQSKLD 168

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257
           +NI    + E T +   IS+       +FDK S +   E    L+KI            +
Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315
           +L++    I I GHTD+         N  LS  RAY     +     S+   ++   SG 
Sbjct: 220 ILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGR 275

Query: 316 AHHRLKIASDPMN-SANRRIDI 336
           +       +   +   +RRI+I
Sbjct: 276 SFSDPVFLNGVEDKDKSRRIEI 297


>gi|257092704|ref|YP_003166345.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045228|gb|ACV34416.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 221

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + +   PE    L ++          + I  GHTD     + A  N +LS  RA +
Sbjct: 107 LFDFNKATLRPEGKAKLDEVVAKAGAIKLEVIIAVGHTD--RIGSDAY-NQKLSERRAAA 163

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP----MNSA-------NRRIDI 336
             Q L+  G+  +R+    G          D      +         +RR+DI
Sbjct: 164 VKQYLVSKGIDANRVY-TEGKGKKNPVTKPDQCLGKTSPKVIACLQPDRRVDI 215


>gi|4704601|gb|AAD28174.1|AF104303_1 fibronectin binding protein [Campylobacter jejuni]
          Length = 287

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 206 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 262

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321
              L K GV + RI  + G+     +
Sbjct: 263 ANELEKYGVEKSRIKTV-GYGQDNPR 287


>gi|4704599|gb|AAD28173.1|AF104302_1 fibronectin binding protein [Campylobacter jejuni]
          Length = 287

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P     +++I +VL  +    +I  GHTD     + A  N +LS  RA S 
Sbjct: 206 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 262

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321
              L K GV + RI  + G+     +
Sbjct: 263 ANELEKYGVEKSRIKTV-GYGQDNPR 287


>gi|115526690|ref|YP_783601.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520637|gb|ABJ08621.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 165

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   +   P+ I  L+K  + L        +I GH D    R     N  L   R
Sbjct: 57  DRVFFESDQTDLSPQAIATLEKQAQWLQQYNRYAFTIEGHADE---RGTREYNIALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 114 AQSVRSYLASRGIDASRMRTIS-YGKERPVAVCNDISCWSQNRR 156


>gi|330878862|gb|EGH13011.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 320

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 98  AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 214 RALNRRVEILMTPQ 227


>gi|126725971|ref|ZP_01741813.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126705175|gb|EBA04266.1| OmpA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 224

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+         LQ+    +         + GHTD        R N RL L RA S 
Sbjct: 77  FAFNSAKLDGAAQATLQQQATWIRQFPEVRFRVYGHTD---LVGGNRFNKRLGLRRAQSV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
               +  G+  DR+  ++ F   +  + +      NRR
Sbjct: 134 VNFFISQGIGRDRLEAVASFGEEQPIVFTQTEERQNRR 171


>gi|300870375|ref|YP_003785246.1| peptidoglycan-associated lipoprotein [Brachyspira pilosicoli
           95/1000]
 gi|300688074|gb|ADK30745.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Brachyspira pilosicoli 95/1000]
          Length = 202

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           ++   +  + +    ++    ++      + +G     ++ G    + +     +F  + 
Sbjct: 26  EMAPAENAEPVALAVQEEPQAVANTGELYLPQGTSIRDSQRG---RVFETNPKIIFGFAK 82

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +       V   ++ E L  +    + + GHT           N+ LS++R  +A   L+
Sbjct: 83  TTMPANANVAFAQVIEFLDKNPNVRLVVEGHTSNKGI--AYPYNYNLSVNRVKNARAYLV 140

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SAN-RRIDILVEDRQG 343
            +GV  +R+ +       +    + P +   AN RR + ++ + Q 
Sbjct: 141 NNGVDANRLIE-------KPLGEALPESNVQANLRRYEFIIIENQA 179


>gi|302532142|ref|ZP_07284484.1| type VI secretion system OmpA/MotB [Streptomyces sp. C]
 gi|302441037|gb|EFL12853.1| type VI secretion system OmpA/MotB [Streptomyces sp. C]
          Length = 214

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           ++  +F K S+         + ++  E+  +S   + + G TD        +    LS  
Sbjct: 102 QSEVLFAKDSAELSGAAGARIAEVAQEIRQNSPRKVMVCGFTDNLGTYAHGKT---LSTQ 158

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           RA + ++ L     +     ++ G +        +++     NRR++I
Sbjct: 159 RAEAVHKALAAQLSASGIAYEVVGKSEDDPIADNSTEEGRKKNRRVEI 206


>gi|197337853|ref|YP_002158755.1| outer membrane protein [Vibrio fischeri MJ11]
 gi|197315105|gb|ACH64554.1| outer membrane protein [Vibrio fischeri MJ11]
          Length = 322

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL-SLDRAYSAYQVLMKSGVSEDRISK 311
            ++   +      +SI G+TDA   +     N  + SL RA  A  +L+K+GV E+RI  
Sbjct: 232 NELALSVKQGQGKVSITGYTDA---KGTDSAN-DIESLRRATYAADMLIKAGVDEERIL- 286

Query: 312 ISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343
           I+        +  D M    + NRR+ I    R G
Sbjct: 287 INSKGSADPLVNEDLMRNESALNRRVVIQFNRRVG 321


>gi|59714283|ref|YP_207058.1| outer membrane protein A [Vibrio fischeri ES114]
 gi|59482531|gb|AAW88170.1| outer membrane protein A [Vibrio fischeri ES114]
          Length = 324

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL-SLDRAYSAYQVLMKSGVSEDRISK 311
            ++   +      +SI G+TDA   +     N  + SL RA  A  +L+K+GV E+RI  
Sbjct: 234 NELALSVKQGQGKVSITGYTDA---KGTDSAN-DIESLRRATYAADMLIKAGVDEERIL- 288

Query: 312 ISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343
           I+        +  D M    + NRR+ I    R G
Sbjct: 289 INSKGSADPLVNEDLMRNESALNRRVVIQFNRRVG 323


>gi|190892104|ref|YP_001978646.1| outer membrane protein, OmpA family [Rhizobium etli CIAT 652]
 gi|190697383|gb|ACE91468.1| putative outer membrane protein, OmpA family [Rhizobium etli CIAT
           652]
          Length = 722

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + ++       +E   I GHTDA       + N  LS  R
Sbjct: 607 FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 663

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 664 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 708


>gi|229591316|ref|YP_002873435.1| putative phosphate-related ABC transporter exported protein
           [Pseudomonas fluorescens SBW25]
 gi|229363182|emb|CAY50235.1| putative phosphate-related ABC transport system, exported protein
           [Pseudomonas fluorescens SBW25]
          Length = 443

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    LQ++   +       + +++ G  DA   P R        LS  R
Sbjct: 342 FEEGSASLDNKARQDLQRVVAYIKSHDKLDKQVTLVGFGDAKNDPQRAAL-----LSKLR 396

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L+KSGV    + +I GF       A+  D     NRR+++ V
Sbjct: 397 AMAVRRELVKSGVV---LREIRGFGAQMPVAANTADEGRIKNRRVEVWV 442


>gi|218440795|ref|YP_002379124.1| OmpA/MotB domain protein [Cyanothece sp. PCC 7424]
 gi|218173523|gb|ACK72256.1| OmpA/MotB domain protein [Cyanothece sp. PCC 7424]
          Length = 222

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 21/129 (16%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L  ++    K K+ +  L  KI   L+  + ++ +  ++   T        +   N  +
Sbjct: 46  QLLHKQDELQKYKEAIDQLPVKIIKALNETIPNSGI--IVHPETGD------VSLDNRIL 97

Query: 237 FDKSSSIPLPETIVVLQKIGEV----------LAHSTEVISIRGHTDASPFRNIARDNWR 286
           FD+ S+   PE    LQ+   +          L      + I GHT +   +    DN  
Sbjct: 98  FDEGSASLKPEGKQFLQQFIPIYSQHIFSNTLLDQQIIRVIIEGHTSS---KGSDSDNME 154

Query: 287 LSLDRAYSA 295
           LSL RA S 
Sbjct: 155 LSLRRALSV 163


>gi|327189348|gb|EGE56516.1| putative outer membrane protein, OmpA family [Rhizobium etli
           CNPAF512]
          Length = 722

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + ++       +E   I GHTDA       + N  LS  R
Sbjct: 607 FATGSAEIPMAQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 663

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 664 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 708


>gi|224418309|ref|ZP_03656315.1| putative flagellar motor protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827631|ref|ZP_04870516.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
 gi|253511037|gb|EES89696.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491]
          Length = 276

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKE-------KILAMKRKKRLQDLAKKISSTLSGLVA 208
           D  K T+ E SI    +     +  E       +   +       +   K+ S +     
Sbjct: 42  DAKKLTEAEGSIRGSLSVLSGGIKIEESRNRILQQADITTDPETAEQIIKVQSEILEFKE 101

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE--V 265
           D  V          G    I+      +FD+  ++I   + I+ L+++  +L    +   
Sbjct: 102 DARVSLGPSVVEDDGKEGFILRFHGRLLFDEEKTAIENADEILFLKRLALILQKMPQTMH 161

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322
           + I G+ D    +     +D+  LS  RA +  ++L+++ V+  +I+ + G A +  L  
Sbjct: 162 LDIIGYADNVEGKPNLKYQDSLGLSALRASNVAKILIENQVNPQKITSLGGGATNFLLPN 221

Query: 323 ASDPMNSANRRID 335
            +    + NRR++
Sbjct: 222 TNAENRAQNRRVE 234


>gi|167765428|ref|ZP_02437541.1| hypothetical protein BACSTE_03818 [Bacteroides stercoris ATCC
           43183]
 gi|167697056|gb|EDS13635.1| hypothetical protein BACSTE_03818 [Bacteroides stercoris ATCC
           43183]
          Length = 396

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP---MF 237
           + I A++     Q +A+  ++      A    +    E   T ++++  D    P    F
Sbjct: 241 QLISALELSAMQQQIAEMAAANQQLESALTAAQNKPMEVAETEVVVT--DPNIAPRTVFF 298

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
              S+   P  ++ +  + + +        ++ G+ D++        N  LSL RA +  
Sbjct: 299 KIGSAEVSPREVMNISYLAKQMQEFPNTTYTVNGYADSA--TGTPEFNKELSLKRAQAVV 356

Query: 297 QVLMKS-GVSEDRI 309
            VL+K  G+  +R+
Sbjct: 357 DVLVKDYGIPANRL 370


>gi|86151560|ref|ZP_01069774.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|121613602|ref|YP_001000300.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005251|ref|ZP_02271009.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315124117|ref|YP_004066121.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841189|gb|EAQ58437.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|87250368|gb|EAQ73326.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315017839|gb|ADT65932.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 317

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 54/322 (16%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++ + +    + N        Q S+   ++L 
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN------YKQLSKDLNSTLD 115

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                     K   +     ++++  L  L ++   A ++ + L  + + +S  L   + 
Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGFIRENLSKELQSKLD 168

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257
           +NI    + E T +   IS+       +FDK S +   E    L+KI            +
Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315
           + ++    I I GHTD+         N  LS  RAY     +     S+   ++   SG 
Sbjct: 220 IFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGR 275

Query: 316 AHHRLKIASDPMN-SANRRIDI 336
           +       +   +   +RRI+I
Sbjct: 276 SFSDPVFVNGVEDKDKSRRIEI 297


>gi|327399143|ref|YP_004340012.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411]
 gi|327181772|gb|AEA33953.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411]
          Length = 172

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            VL  I + +       I I G+ D    R     N  L   RA +A + L+  GV+ DR
Sbjct: 82  AVLDGIAQYMVKHPNVRIRIEGNCDE---RGTVEYNLALGQKRALAAKKYLVAKGVNPDR 138

Query: 309 ISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341
           I  IS +   R    + +    + NRR   ++  +
Sbjct: 139 IDIIS-YGESRPLDPAHNEYAWAKNRRDHFVILSK 172


>gi|258545495|ref|ZP_05705729.1| outer membrane protein A (outer membrane protein II)
           [Cardiobacterium hominis ATCC 15826]
 gi|258519195|gb|EEV88054.1| outer membrane protein A (outer membrane protein II)
           [Cardiobacterium hominis ATCC 15826]
          Length = 324

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 20/118 (16%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           FD+S  +  LPE    LQ+I         +T VI I G+TD  P    A  N RLS  RA
Sbjct: 205 FDRSDYASILPEGKRQLQEIAAAAAQYRDATSVIYIDGYTD--PEGKPAY-NQRLSQRRA 261

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA--------NRRIDILV 338
            +  +V++++G     +    G   +   +      +P N++        NRR++I +
Sbjct: 262 QTVKRVMIENGFPAASLKA-RGHGENDPVVTGCRKRNPRNASARAACDQPNRRVEIKL 318


>gi|330443988|ref|YP_004376974.1| peptidoglycan-associated lipoprotein [Chlamydophila pecorum E58]
 gi|328807098|gb|AEB41271.1| peptidoglycan-associated lipoprotein [Chlamydophila pecorum E58]
          Length = 189

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  S     E  + +L  +   +  S +V + I GHTD    R  A  N  L   RA +
Sbjct: 85  FETDSYSIKGEENLSILTTLVHHMKKSPKVTLYIEGHTDE---RGAASYNLALGSRRANA 141

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
               L+K G+S +R+  IS +     +       +   NRR +  +  R
Sbjct: 142 VKNYLIKQGISAERLFTIS-YGKEHPRNPGHDELAWQQNRRTEFKIYAR 189


>gi|312961750|ref|ZP_07776248.1| phosphate transport system substrate-binding protein [Pseudomonas
           fluorescens WH6]
 gi|311284009|gb|EFQ62592.1| phosphate transport system substrate-binding protein [Pseudomonas
           fluorescens WH6]
          Length = 443

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L+++   L       + +++ G  DA   P R        LS  R
Sbjct: 342 FEEGSASLDNKARQDLRRVVAYLKGHDKLDKQVTLVGFGDAKNDPQRAAL-----LSKLR 396

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L+K+GV    + +I GF       A+  D     NRR+++ V
Sbjct: 397 AMAVRRELVKNGVV---LREIRGFGAQMPVAANTADEGRIKNRRVEVWV 442


>gi|163800131|ref|ZP_02194032.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp.
           AND4]
 gi|159175574|gb|EDP60368.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp.
           AND4]
          Length = 356

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F            + L  +   ++       I + GHTD          N  +S  RA  
Sbjct: 218 FQFGQKKLNASQQITLAALYSYISVDERVTKILVDGHTDNV---GSQLTNLTVSRQRAEQ 274

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             Q L++ G+    + ++          ++      + NRR+ +
Sbjct: 275 VAQALIQKGMDRS-LIEVRAHGSRYPIASNKTQLGQAKNRRVTL 317


>gi|288225947|gb|ADC44458.1| OmpA [Candidatus Erwinia dacicola]
          Length = 324

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 196 KSDVLFNFNKNTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIDSEQY-NQKLS 252

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337
             RA S    L+  G+   +I    G       I S  D +   N         RR++I 
Sbjct: 253 EKRAQSVVDHLVSKGIPASKIYA-RGKGKSNPIIGSTCDSVKGRNALIDCLAPDRRVEIE 311

Query: 338 VE 339
           V+
Sbjct: 312 VK 313


>gi|87199040|ref|YP_496297.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
 gi|87134721|gb|ABD25463.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
          Length = 170

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I D  N   FD            VLQ     LA      I+I GH D    R     N  
Sbjct: 62  ISDTVN---FDTDRYNIDAADQGVLQSQAAWLARYPGKAITIEGHCDE---RGTRDYNIA 115

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
           L   RA SA   L+  GV   RI+ +S      L + SD  + + NRR + + V
Sbjct: 116 LGERRANSAKNYLVSLGVDPGRITTVSYGKERPLALGSDEDSWAKNRRAVTVTV 169


>gi|332667957|ref|YP_004450745.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336771|gb|AEE53872.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 279

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P+    L+K+ + +A + E + + GHTD       A  N +L   RA     +L+K GV 
Sbjct: 186 PKVDAYLEKLAKRVAKTEERVELTGHTDN---DGEADYNLKLGASRARQIRDLLVKLGVK 242

Query: 306 EDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
            D IS  S          +  D     NRR+++ +  +
Sbjct: 243 ADLISTAS-KGETLPVAPNTTDENRHNNRRVEVRLIKK 279


>gi|283955761|ref|ZP_06373252.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792716|gb|EFC31494.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 247

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++  K+  K+ +  K   KEE+  L  L +  +   +  KRLQ    +  +     VA 
Sbjct: 60  STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266
           N+   V                     F++ S+     +    L+++ E+  +      I
Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            IRG+TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P
Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210

Query: 327 MNSANRRIDI 336
               N R++I
Sbjct: 211 QALENNRVEI 220



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD  +      ++K          + S +LK        Q + ++     L  
Sbjct: 53  ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183
           S            + E+G     S D++  + +      +LPP +K +I
Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157


>gi|316932667|ref|YP_004107649.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris
           DX-1]
 gi|315600381|gb|ADU42916.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris
           DX-1]
          Length = 165

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   S   P+    L K  + L   +    +I GH D    R     N  L   R
Sbjct: 57  DRVFFESDQSDLSPQAAATLDKQVQWLQTYARYTFTIEGHADE---RGTREYNIALGARR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A S    L+  G+   R+  IS +   R     + ++  S NRR
Sbjct: 114 AQSVRNYLVSRGIDASRMRTIS-YGKERPVAVCNDISCWSQNRR 156


>gi|225849664|ref|YP_002729898.1| OmpA/MotB [Persephonella marina EX-H1]
 gi|225646381|gb|ACO04567.1| OmpA/MotB [Persephonella marina EX-H1]
          Length = 286

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 165 KSINKEENYFLPPLSKEKILAMKR--KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           + I +  + F+P   K   L  ++  +K+++   + I     G     +   + FE    
Sbjct: 127 QEIEQGTDPFVPEGEKVAKLEERKTPEKKVEKEREIIEEQFEGYYPLKLHARIHFE---- 182

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
                         FD        E +  L  I + L       + I G+TD+    + +
Sbjct: 183 --------------FD--KYQIKKEYLPYLNVISKYLKSKPNLKVKIVGYTDS--IGSKS 224

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
            ++ RL+  RA +  + L+K G+  +RI  I G       + +    +   NRR D  V 
Sbjct: 225 YND-RLAYKRALAVKEYLIKQGIPAERIE-IVGRGKENYLVDNKTWLNRFTNRRADFFVM 282

Query: 340 D 340
           +
Sbjct: 283 E 283


>gi|212709831|ref|ZP_03317959.1| hypothetical protein PROVALCAL_00879 [Providencia alcalifaciens DSM
           30120]
 gi|212687642|gb|EEB47170.1| hypothetical protein PROVALCAL_00879 [Providencia alcalifaciens DSM
           30120]
          Length = 357

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + +   PE    L ++   L++       + + G TD          N  LS
Sbjct: 229 RSDVLFNFNKATLKPEGQQALNELYNELSNIDPTQGRVLVVGFTDRI---GSQNYNLPLS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  GV    I+   G         +  D +            +RR++I 
Sbjct: 286 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDAVKGRAALIECLAPDRRVEIE 344

Query: 338 VE 339
           ++
Sbjct: 345 IQ 346


>gi|121594094|ref|YP_985990.1| TonB box domain-containing protein [Acidovorax sp. JS42]
 gi|222111172|ref|YP_002553436.1| peptidoglycan-associated lipoprotein [Acidovorax ebreus TPSY]
 gi|120606174|gb|ABM41914.1| TonB box domain protein [Acidovorax sp. JS42]
 gi|221730616|gb|ACM33436.1| peptidoglycan-associated lipoprotein [Acidovorax ebreus TPSY]
          Length = 180

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S I  PE   VL+     +  S+   + + GHTD    R     N  L   RA + 
Sbjct: 79  FDFDSFIVKPEFQSVLEAHARFMKASSARKVVLEGHTDE---RGGREYNLALGQKRAEAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   GV + ++  +S F   +  +     ++   NRR+++
Sbjct: 136 RRSLGLLGVQDAQVEAVS-FGKEKPAVQGHTEDAHSQNRRVEL 177


>gi|313676967|ref|YP_004054963.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312943665|gb|ADR22855.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 618

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +    G ++ +    N   F+  S     ++   + K+ ++L+ +    I I G+T
Sbjct: 504 NFALKPIEKGAIVEL----NNIYFEFDSYELSEKSSNEINKVADLLSQNPNLKIEIGGYT 559

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK 321
           D     + +  N  LS  RA + Y+ L +K GV E+ I  + G+   +L 
Sbjct: 560 DE--IGSASY-NKELSRKRAKAVYEKLIIKDGVLEENIKAV-GYGAKKLP 605


>gi|296104273|ref|YP_003614419.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058732|gb|ADF63470.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 161

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +T +FDK+ +   PE+   ++ +   LA +      + GHTD          N  LSL R
Sbjct: 53  DTILFDKNDARLRPESEAQIRTMASRLAATGLKHARMDGHTDNY---GEESYNEALSLKR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A +   V  K            G        ++      + NRR+ +++
Sbjct: 110 ANAVADVWAKGANIPRSNLTTQGLGKKYPVSSNSTAQGRAENRRVAVVI 158


>gi|257126466|ref|YP_003164580.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050405|gb|ACV39589.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b]
          Length = 149

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +  I     I  L++I  +L     +  +   G+TD++      + N +LSL RA +
Sbjct: 37  FKVNGRIITEYQIFDLKEIVNILNKFGESGTVDFVGYTDST---GTKKYNQKLSLIRARN 93

Query: 295 AYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
             ++  + G+ +   I KISG         +D       NRR++IL
Sbjct: 94  VARLFREFGLKDAISIGKISGKGEEDPVDLNDTDQGKYSNRRVEIL 139


>gi|311696332|gb|ADP99205.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 146

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              + I  LQ+    L       + I GH+D          N  LS  RA +  + L++ 
Sbjct: 47  LDKDDIAFLQQHAAYLKEHPSVSVRIHGHSDNF---GSEDYNQFLSRLRANAVARSLIQE 103

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           GV E RI      +   L    D   +ANRR+++
Sbjct: 104 GVEESRILMRHWGSARPLATPED--RAANRRVEL 135


>gi|310814990|ref|YP_003962954.1| OmpA domain protein [Ketogulonicigenium vulgare Y25]
 gi|308753725|gb|ADO41654.1| OmpA domain protein [Ketogulonicigenium vulgare Y25]
          Length = 299

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+ PLP   V L  + + L       + I GHTDA         N  +S  RA + 
Sbjct: 193 FETGSAAPLPGADVALGALADWLRADPARRVLIVGHTDA---SGSLAANMTISQARAEAV 249

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
            Q L           + +G  +   +  +D     + NRR++
Sbjct: 250 AQRLRSEFAVPAAQLQAAGAGYMAPRAPNDDEAGRALNRRVE 291


>gi|37704608|gb|AAR01576.1| OprF [Pseudomonas sp. MFY52]
 gi|37704630|gb|AAR01587.1| OprF [Pseudomonas sp. MFY76]
          Length = 316

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+    +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKTNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316


>gi|262039316|ref|ZP_06012632.1| outer membrane porin F [Leptotrichia goodfellowii F0264]
 gi|261746660|gb|EEY34183.1| outer membrane porin F [Leptotrichia goodfellowii F0264]
          Length = 104

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           ++++    + +FD   S   P+   +LQ + E +  +   ++I GHTD+   +     N 
Sbjct: 9   VTVVLDERSLLFDFDKSNVKPQYYGILQNLKEYIEVNDYDVTIIGHTDS---KGTNEYNM 65

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           +L + RA S    +++ GV   RI  +           +
Sbjct: 66  KLGMRRAESVKAKMIEFGVPASRIVGVESRGEEEPVATN 104


>gi|184157314|ref|YP_001845653.1| small protein A [Acinetobacter baumannii ACICU]
 gi|332876511|ref|ZP_08444276.1| OmpA family protein [Acinetobacter baumannii 6014059]
 gi|183208908|gb|ACC56306.1| Small protein A (tmRNA-binding) [Acinetobacter baumannii ACICU]
 gi|322507199|gb|ADX02653.1| small protein A (tmRNA-binding) [Acinetobacter baumannii 1656-2]
 gi|323517176|gb|ADX91557.1| small protein A (tmRNA-binding) [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735280|gb|EGJ66342.1| OmpA family protein [Acinetobacter baumannii 6014059]
          Length = 259

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 228 IIDQRNTPMFD--KSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283
           I D+  + +F   +  +  + E    + KI E +  S     I + G TD  P    +  
Sbjct: 141 IADRTASVLFAFERFDASAIEEGTNSVVKIAEQIKKSPTTTPIIVSGFTD--PLGKFSY- 197

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335
           N  LS  RA +  ++L++ GV   RI +I   +   L       N        + NRR++
Sbjct: 198 NQELSSKRANTVAKLLVRQGVEPSRI-QIQANSQTDLYKQCSDNNSSQLIQCLAPNRRVN 256

Query: 336 I 336
           I
Sbjct: 257 I 257


>gi|294140610|ref|YP_003556588.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293327079|dbj|BAJ01810.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 252

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 21/188 (11%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  + K    +  +  ++       S   +L  +  + L  ++ +  S    L    + +
Sbjct: 68  GGIIGKLVGDDTEMESQQLKLTEQASTINLLN-EDNQSLAIISNQYESLQDELTELRLAR 126

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272
                    G+ I          F   SS         L ++  VL   +   + + G+ 
Sbjct: 127 QQKLTELELGLNIQ---------FKTGSSQLETHFQPQLDELASVLRISNDLRLDLMGYA 177

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN- 331
           D    R  +  N  LS  R       L+  GV E +++  S +       A       N 
Sbjct: 178 DR---RGESTYNQALSEQRVAEVKSYLLTKGVDEKKLAA-SAYGASAPLTAEQSF--END 231

Query: 332 ---RRIDI 336
              RR+ I
Sbjct: 232 FFDRRVTI 239


>gi|146997|gb|AAA24239.1| outer membrane protein II [Escherichia blattae]
          Length = 241

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G+TD     + A  N RLS
Sbjct: 122 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 178

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+   +I+   G         S   N              RR++I 
Sbjct: 179 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGSTCDNVKQRAALIDCLAPDRRVEIE 237

Query: 338 VE 339
           V+
Sbjct: 238 VK 239


>gi|269139917|ref|YP_003296618.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella
           tarda EIB202]
 gi|267985578|gb|ACY85407.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella
           tarda EIB202]
 gi|304559752|gb|ADM42416.1| Peptidoglycan-associated lipoprotein precursor; Outer membrane
           protein P6; OmpA/MotB precursor [Edwardsiella tarda
           FL6-60]
          Length = 170

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGE 257
             +  G+ A+ +       ++     + + + +   +  F        P+ +  L     
Sbjct: 31  DQSGMGMGANGMENSSSNLSSDEQARLQMQELQKNNIVYFGLDKYDVTPDYMQELDAHAA 90

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GF 315
            L  +    +++ GHTD    R     N  L   RA +    L   GVS D+I  +S G 
Sbjct: 91  FLRSNPSYKVTVEGHTDE---RGTPEYNIALGERRANAVKMYLQGKGVSADQIDIVSYGK 147

Query: 316 AHHRLKIASDPMNSANRR 333
               +    +   + NRR
Sbjct: 148 EKPAVLGHDEAAYAKNRR 165


>gi|332993882|gb|AEF03937.1| peptidoglycan-associated lipoprotein [Alteromonas sp. SN2]
          Length = 188

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPM 236
            ++   LA ++ +  QD  +  +  +    A  + +   + +     +         T  
Sbjct: 32  AAERNRLAQEQAQAEQDARQAEAQRVEAEAAQRMKRSEEMVQQEMEALK-----NEQTVY 86

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +   PE   +L K    L  +    ++I GHTD+   R     N  L   RA S 
Sbjct: 87  FDFDRASIKPEFQRLLDKHAAFLVKNPSTKVTIEGHTDS---RGTPEYNIALGERRAQSV 143

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
              LM +GVS  +I+ +S        + S     + NRR
Sbjct: 144 ETYLMNAGVSSSQITVVSYGEEKSAVMGSTEYAFAQNRR 182


>gi|124514981|gb|EAY56492.1| putative Outer membrane protein, OmpAfamily [Leptospirillum
           rubarum]
          Length = 521

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 224 ILISIID-QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           +L  I D  R    F    +        +L++   +L       I + GH+D    R   
Sbjct: 75  LLRRIQDLSRKDLSFATGKADLNQRDRRILREDAVLLKRYPKVEILLIGHSDE---RGNQ 131

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             N+RL LDR  SA Q L   G++  RI  +S
Sbjct: 132 IYNFRLGLDRGKSARQFLESLGIAASRIHVVS 163


>gi|332534695|ref|ZP_08410524.1| OmpA/MotB domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035845|gb|EGI72328.1| OmpA/MotB domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 432

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    + I  + ++ + L  +    + I+GH          + N +LS  RA++ 
Sbjct: 328 FSADSSDVRSQYIQEISRLADFLKENPTKQVEIQGHAS---LDGDRKYNRKLSEKRAFAV 384

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340
            ++L+K   V   R+    G+   + ++   S   N+ANRRI+ ++ D
Sbjct: 385 AEILIKQFDVEPKRVKS-FGYGIDQPRVNEISVRANAANRRIEAVITD 431


>gi|147003|gb|AAA24242.1| outer membrane protein II [Escherichia blattae]
          Length = 240

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G+TD     + A  N RLS
Sbjct: 121 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 177

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337
             RA S    L+  G+   +I+   G         S   N              RR++I 
Sbjct: 178 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGSTCDNVKQRAALIDCLAPDRRVEIE 236

Query: 338 VE 339
           V+
Sbjct: 237 VK 238


>gi|117619075|ref|YP_857151.1| sodium-type flagellar protein MotY [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560482|gb|ABK37430.1| sodium-type flagellar protein MotY [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 287

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +DK+S      +   L  IGE +    S +V+ I  ++D+         N +LS  RA +
Sbjct: 180 YDKNSDELSLASKRRLAMIGEYVKVDKSIDVVVIDAYSDSY---GGRWPNQKLSEKRADA 236

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             +V M  G+   +I  + G    +   +++     + NRR+ I
Sbjct: 237 IKKVFMDLGIEPGKI-SVEGHGEKQHIASNETEDGRAKNRRVVI 279


>gi|327404493|ref|YP_004345331.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320001|gb|AEA44493.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 279

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 213 KGVLFETTRTGILI-SIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLA-HSTE 264
           + +  +  + G     I D            FD   S   PE    L +I  V+  H+  
Sbjct: 147 RSIFVDDVKNGRKSKEIRDLERKNFDFKPIYFDYDKSDIRPEFESFLNRIVYVINSHTDL 206

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
            + + G+TDA    +   D   LS  RA +     +K+G+  DRI  I            
Sbjct: 207 RVKVTGNTDAD-GSDQYNDG--LSERRAEAIIAFFVKAGLKRDRIV-IDFKGEKNPVSDN 262

Query: 323 ASDPMNSANRRID 335
            SD     NRR+D
Sbjct: 263 NSDEGKQLNRRVD 275


>gi|307295611|ref|ZP_07575447.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306878650|gb|EFN09870.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 234

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           +  FD +   PLPE +  +  + +  A        + G+TD        R N  LSL RA
Sbjct: 128 SIFFDWNMDAPLPEGVGTISTLTQTAAQCGWTRFGVTGYTDT---SGSNRYNDGLSLRRA 184

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
            +   ++ + G++ D ++ ++G    +LKI +        NRR++I
Sbjct: 185 RNVASLMSQGGIATDAMT-VTGLGETQLKIETADGVREPMNRRVEI 229


>gi|83647670|ref|YP_436105.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83635713|gb|ABC31680.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 346

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288
           +R    F    S+   +    L K+   +     V  I + GHTD++        N RLS
Sbjct: 218 ERTAVFFKLDESVLTDQDKRELDKVVLYVKADPSVTAIFVDGHTDST---GRRIYNRRLS 274

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340
            DRA +    LM  GV+ ++I+           + +  P N + NRR  + +E 
Sbjct: 275 KDRAEAVTAYLMDKGVASEKIT-TRYHGERYPVVQNAGPKNLARNRRATVRLER 327


>gi|114570410|ref|YP_757090.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114340872|gb|ABI66152.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 359

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           D  + P+ F+  SS    +   V+ +            +++ G TD       A  N  L
Sbjct: 248 DDVSFPVYFEWDSSTLTAQARAVIAQASNQRGSCGVTRVTVAGFTDR---SGAASYNVGL 304

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           S  RA    + L++ GV    IS    F   R  +A+        NRR ++++
Sbjct: 305 SERRARVVREELVRLGVPASTISM-EAFGETRNAVATADGVREPLNRRTEVVI 356


>gi|305665970|ref|YP_003862257.1| OmpA domain-containing protein [Maribacter sp. HTCC2170]
 gi|88710745|gb|EAR02977.1| OmpA domain protein [Maribacter sp. HTCC2170]
          Length = 301

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
            ++S     E       I   L    + + +I GHTD +  R+    N +L  +RA  A 
Sbjct: 201 AEASINLRAEQRQKFANISRYLDKEDDAVANIVGHTDNTGQRDA---NIKLGQERADFAK 257

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             LM++G+ E RI+  +         ++D     + NRR  I +
Sbjct: 258 SYLMRNGIPESRINA-TSKGPDEPIASNDTEEGRAKNRRTVITL 300


>gi|91762267|ref|ZP_01264232.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718069|gb|EAS84719.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 180

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            +   F  + ++    +   L+K    L  +++  + + GH D    R     N  L   
Sbjct: 73  PDRVFFATNETVLTTASRETLRKQAAWLRKNSDINVVLEGHADE---RGTREYNLALGER 129

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRR 333
           RA SA   LM  G+S +RI  +  +   R   + S+P+  S NRR
Sbjct: 130 RANSAKDYLMTYGISSERI-SVLSYGKERPVDSGSNPLAWSKNRR 173


>gi|124266540|ref|YP_001020544.1| putative peptidoglycan-associated lipoprotein [Methylibium
           petroleiphilum PM1]
 gi|124259315|gb|ABM94309.1| putative peptidoglycan-associated lipoprotein precursor
           [Methylibium petroleiphilum PM1]
          Length = 179

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   E   ++    +VL     + + I GHTD    R     N  L   RA + 
Sbjct: 78  FDFDSFLVKDEYRPIVDNYSKVLNSDRKKRVVIEGHTDE---RGGREYNLALGQKRAEAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
            + L   GV + +I  +S          SD    + NRR ++
Sbjct: 135 AKSLTLLGVQDGQIESVSYGKERPAVTGSDEAAWAKNRRAEL 176


>gi|260576643|ref|ZP_05844630.1| peptidoglycan-associated lipoprotein [Rhodobacter sp. SW2]
 gi|259021128|gb|EEW24437.1| peptidoglycan-associated lipoprotein [Rhodobacter sp. SW2]
          Length = 177

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F    S    +    L    + L  +    I I GH D          N  L   R
Sbjct: 67  DRVFFAVDQSNLSDQARATLAGQAQWLNTNRDYAIIIEGHADEQ---GTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR 333
           A +    L+  GV+  R+  +S      +++ +++   S NRR
Sbjct: 124 ASAVQNYLISQGVTASRMRTVSYGKERPIEVCSTEDCYSRNRR 166


>gi|157414881|ref|YP_001482137.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385845|gb|ABV52160.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747518|gb|ADN90788.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931798|gb|EFV10753.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 317

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++T
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNLTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N+ K +  +       I+I ++  +       +FDK S +   E    L+KI       
Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|187918870|ref|YP_001887901.1| RND family efflux transporter MFP subunit [Burkholderia
           phytofirmans PsJN]
 gi|187717308|gb|ACD18531.1| efflux transporter, RND family, MFP subunit [Burkholderia
           phytofirmans PsJN]
          Length = 560

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F   S+    ++   L  +   L  +      I G+TD+         N +L+  
Sbjct: 455 QTAVFFALGSASLDSQSADALAGVARRLLAAPGSRAVISGYTDS---SGSYEANVKLAAA 511

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQG 343
           RA +    L+ +GV   RI         R    +ASD  + + RR+D+ +    G
Sbjct: 512 RAATVRSALIVAGVDVARIDM------RRPARIVASDAPDKS-RRVDVTLAPSTG 559


>gi|19881379|gb|AAM00932.1|AF491824_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 341


>gi|296158506|ref|ZP_06841336.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295891074|gb|EFG70862.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 372

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+   +  LP     L ++   L    +V  I I G+TD          N +LS  RA 
Sbjct: 237 FDRGDLAGMLPAGKAKLDELVRNLKQVDDVTSIRIDGYTDRL---GSDSYNRQLSAKRAE 293

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------NRRIDI 336
           +  + L   GVS    ++  G     ++       +       NRR+++
Sbjct: 294 TVKRYLQSGGVSAPISARGRGKEDPVVQCNDRNHEALIACLGPNRRVEL 342


>gi|270339898|ref|ZP_06203472.1| OmpA family protein [Prevotella bergensis DSM 17361]
 gi|270333364|gb|EFA44150.1| OmpA family protein [Prevotella bergensis DSM 17361]
          Length = 694

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           IS+    +   +D   +     + V L ++  +L  +  + I +  H D   ++  +  N
Sbjct: 517 ISVPTLIDNIFYDFDKATLRDTSKVALDRLVTMLNENPNITIELSAHAD---YKGASTYN 573

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
            RLS  RA S    L+  G++ DR++ + G+   + K         NR++
Sbjct: 574 KRLSQRRAESVVNYLIAHGIAADRLTPM-GYGKEKPKT-------VNRKV 615


>gi|261344255|ref|ZP_05971899.1| outer membrane protein A [Providencia rustigianii DSM 4541]
 gi|282567857|gb|EFB73392.1| outer membrane protein A [Providencia rustigianii DSM 4541]
          Length = 353

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + +   PE    L ++   L++       + + G TD          N  LS
Sbjct: 225 RSDVLFNFNKASLKPEGQQALNELYNELSNIDPTQGRVLVVGFTDRI---GSQNYNLPLS 281

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337
             RA S    L+  GV    I+   G         +  D +            +RR++I 
Sbjct: 282 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDAVKGRAALIECLAPDRRVEIE 340

Query: 338 VE 339
           ++
Sbjct: 341 IQ 342


>gi|146276382|ref|YP_001166541.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554623|gb|ABP69236.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 730

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+   P       V+ Q I +++A     +  I GHTDA         N  LS  R
Sbjct: 617 FATGSAAIDPGQAERLAVLGQTIADMVAERPGEVFLIEGHTDAV---GDEASNLALSDRR 673

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S    L +   V  + +  + G+    L+I +D     NRR+ +
Sbjct: 674 AESVALALSEYFDVPPENMV-VQGYGEGDLRIDTDGPEQRNRRVAV 718


>gi|327396327|dbj|BAK13749.1| OmpA/MotB domain protein [Pantoea ananatis AJ13355]
          Length = 287

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 47/199 (23%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               P        A  R   L  L   +  +   L  D I +         G+       
Sbjct: 77  KQVDPLEQYMSQAAAARLNLLYQLRNNLKQSFPELPVDVIPEEGTLRFQGEGL------- 129

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA----------------------HSTEVISIR 269
                F  +S     +   +++ + + L                          E + I 
Sbjct: 130 -----FTSNSFTLSDDKRKIVEALAKTLDSLLPCYTFSQSVGWNKSCNPSFAIIEAVQIE 184

Query: 270 GHTDASPFRNIARDNWRLSLDRA-------YSAYQVLMKS-GVSEDRISKISGFAHHRLK 321
           GHTD+   +     N  LS +RA        +A   L+    +    +  ++G+   R  
Sbjct: 185 GHTDS---KGEDVYNLNLSTNRAITTFTSMLAAAPDLVAHFNMRSQPVLSVAGYGKMRPV 241

Query: 322 IASDP--MNSANRRIDILV 338
             +D     + NRRID+ +
Sbjct: 242 KPNDTPQNMAMNRRIDLRI 260


>gi|260778540|ref|ZP_05887432.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604704|gb|EEX30999.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 203

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  SS   P  +  ++++ + L       I ++G+            N  LS  RA  
Sbjct: 83  LFENDSSDIQPVFLTQIREMADFLKIYPSTSIELQGYASKVGNHGH---NMALSQRRAEE 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
               L+ +GVS  RI +I GF    L    D    ++ NR++   V   +G
Sbjct: 140 VESALINNGVSHTRI-RIVGFGDTNLADTGDDEITHAKNRKVVATVVGHKG 189


>gi|113970538|ref|YP_734331.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4]
 gi|113885222|gb|ABI39274.1| OmpA/MotB domain protein [Shewanella sp. MR-4]
          Length = 264

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                 N++  S       +   R S     +  +        D   G          L 
Sbjct: 2   MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLSGGALL 61

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +              +L   S    D  K+     ++ +++   L  LS ++  + +R
Sbjct: 62  GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASLSSKQQASEQR 118

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                   K++   L+        +  L      G+ +          F   SS      
Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           +  L  + +V+  S+E  + ++G+ D    R     N  LS  R       L+K GV+ +
Sbjct: 163 LPQLDNVAKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219

Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           RI+    F              +  +RR+ + ++  QG
Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256


>gi|57237387|ref|YP_178400.1| flagellar motor protein MotB [Campylobacter jejuni RM1221]
 gi|86151261|ref|ZP_01069476.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153764|ref|ZP_01071967.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612816|ref|YP_001000046.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926431|ref|ZP_01810114.1| putative flagellar motor protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414633|ref|YP_001481889.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005002|ref|ZP_02270760.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205356014|ref|ZP_03222782.1| putative flagellar motor protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315123901|ref|YP_004065905.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|57166191|gb|AAW34970.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221]
 gi|85841608|gb|EAQ58855.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842725|gb|EAQ59937.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250338|gb|EAQ73296.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|145844594|gb|EDK21700.1| putative flagellar motor protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385597|gb|ABV51912.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205346138|gb|EDZ32773.1| putative flagellar motor protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|307747273|gb|ADN90543.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017623|gb|ADT65716.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931586|gb|EFV10552.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 247

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++  K+  K+ +  K   KEE+  L  L +  +   +  KRLQ    +  +     VA 
Sbjct: 60  STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266
           N+   V                     F++ S+     +    L+++ E+  +      I
Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            IRG+TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P
Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210

Query: 327 MNSANRRIDI 336
               N R++I
Sbjct: 211 QALENNRVEI 220



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD  +      ++K          + S +LK        Q + ++     L  
Sbjct: 53  ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183
           S            + E+G     S D++  + +      +LPP +K +I
Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157


>gi|328675505|gb|AEB28180.1| Outer membrane lipoprotein omp16 precursor [Francisella cf.
           novicida 3523]
          Length = 417

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH---------TDASPFRNIARDNWR 286
           FD  S     +   VL K+   L  +     +I+G+         TD    + +   N R
Sbjct: 70  FDADSYTLNAQAKEVLDKLFAYLKLTDTTRFTIKGYAGKVESKILTDQ---KILTDYNIR 126

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           LS +RA S  + L+  G+       I    +      +D     + N+R++I +E R
Sbjct: 127 LSKNRASSVEEYLVNKGLDSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLESR 183


>gi|325336487|gb|ADZ12761.1| OmpA3 [Riemerella anatipestifer RA-GD]
          Length = 473

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S +  P++   L     ++         + + G TD    R  A  N  LS  RA 
Sbjct: 364 FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 420

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
           S  + L+  GVS   + K  G   + LK    +P        N ANRR+
Sbjct: 421 SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 468


>gi|315022385|gb|EFT35413.1| Thrombospondin type 3 repeat:OmpA/MotB [Riemerella anatipestifer
           RA-YM]
          Length = 145

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S +  P++   L     ++         + + G TD    R  A  N  LS  RA 
Sbjct: 36  FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 92

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
           S  + L+  GVS   + K  G   + LK    +P        N ANRR+
Sbjct: 93  SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 140


>gi|313206072|ref|YP_004045249.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312445388|gb|ADQ81743.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
          Length = 473

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S +  P++   L     ++         + + G TD    R  A  N  LS  RA 
Sbjct: 364 FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 420

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
           S  + L+  GVS   + K  G   + LK    +P        N ANRR+
Sbjct: 421 SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 468


>gi|294012218|ref|YP_003545678.1| OmpA-family protein [Sphingobium japonicum UT26S]
 gi|292675548|dbj|BAI97066.1| OmpA-family protein [Sphingobium japonicum UT26S]
          Length = 236

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
           +  FD +   PLPE    +  + +  A        + G+TD        R N  LSL RA
Sbjct: 130 SIFFDWNMDTPLPEGAGTISTLTQTAAQCGWTRFGVTGYTDT---SGSNRYNDGLSLRRA 186

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
            +   ++ + GVS D I+ ++G    +LKI +        NRR++I
Sbjct: 187 RNVASLMSQGGVSADAIT-VTGLGETQLKIETADGVREPMNRRVEI 231


>gi|149202387|ref|ZP_01879360.1| OmpA domain protein [Roseovarius sp. TM1035]
 gi|149144485|gb|EDM32516.1| OmpA domain protein [Roseovarius sp. TM1035]
          Length = 311

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +         L  + E L  S E  +++ GH+D+         N  LS  RA + 
Sbjct: 204 FGLGDNALGAGPYRSLVTLAEFLTASPETRVALVGHSDSI---GGLEQNSALSRARAEAV 260

Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVED 340
             +L++  GV+  ++     G+        S      NRR+++++ D
Sbjct: 261 LNLLVEQHGVAPAQVEAHGIGYLSPIASNTSPEGRERNRRVEVVLLD 307


>gi|94970145|ref|YP_592193.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552195|gb|ABF42119.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 242

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 67/206 (32%), Gaps = 10/206 (4%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
           E     + + +E      K++   K  ++     +     +   A +   +    A   +
Sbjct: 29  EQAAPIINKTNELDDLTAKNSRDIKDTDRRAQSGIADAQAKATTADQHAVQAGQQADAAN 88

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
              + +           E       +      ++  F    +    +    L ++G   +
Sbjct: 89  KNATQVNGQVASLAGTVENLDNYKPV----AESSVHFGFDKADLTKKAKDALDQLGGQFS 144

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
            +   +I + G TD++     A  N++LS  RA +  Q L            + G    +
Sbjct: 145 STKHFIIEVEGSTDST---GDADYNYQLSKRRADAVIQYLADKYQIPAHKIYLIGLGKDK 201

Query: 320 L--KIASDPMNSANRRIDILVEDRQG 343
              K A+    + NRR+D+ +    G
Sbjct: 202 PVEKNATSEGRAKNRRVDVRLMTNTG 227


>gi|19881371|gb|AAM00928.1|AF491820_1 hemagglutinin antigen [Avibacterium paragallinarum]
 gi|19881381|gb|AAM00933.1|AF491825_1 hemagglutinin antigen [Avibacterium paragallinarum]
 gi|19881383|gb|AAM00934.1|AF491826_1 hemagglutinin antigen [Avibacterium paragallinarum]
 gi|38385761|gb|AAR19399.1| hemagglutinin antigen [Avibacterium paragallinarum]
 gi|89147814|gb|ABD62756.1| hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 344

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 287

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 341


>gi|294140499|ref|YP_003556477.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293326968|dbj|BAJ01699.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 197

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  SS+   E  + L K+  ++      + I+GHTD   ++     N  LS+ RA +  
Sbjct: 94  FDFDSSLLKDEDKMELDKLIALVNSLDGKLVIKGHTD---YQGSNAYNENLSMRRARTIQ 150

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
             L       +    +  F   +  I S  +  N+ NRR
Sbjct: 151 DYLEGQLTQGEYEYSVEHFGELQPIIESHTLQANALNRR 189


>gi|85713237|ref|ZP_01044263.1| Sodium-type flagellar protein motY precursor [Idiomarina baltica
           OS145]
 gi|85692932|gb|EAQ30904.1| Sodium-type flagellar protein motY precursor [Idiomarina baltica
           OS145]
          Length = 303

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L++I + L   +    + I  +TDA         N  L+  RA +    
Sbjct: 198 SDELTAPSQRKLKQISDYLKVDADLKLVLIDSYTDAL---GAREPNQTLTEQRANAIKSF 254

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
            ++ G+  DRI  ++     R    +D       NRR+ I+  ++
Sbjct: 255 FVERGIKADRIQTVA-HGEDRPIDHNDNEIGRQKNRRV-IVQLNK 297


>gi|330957696|gb|EGH57956.1| ompA family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 388

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 12/215 (5%)

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 N+Q       S   D      L   ++ +               + K L M   
Sbjct: 83  PFGSNDNAQAKPDAVASKPADKPAAPSLVAKSETDTKWWWPFGANDGKTDEPKALPMPDP 142

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K  Q    +    L   + D+      F+  R   L++I    ++       ++ LP T+
Sbjct: 143 KVTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTL 197

Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             + ++ + +       + I GH D          N ++S +RA S   +   SG+  +R
Sbjct: 198 GPITRLAKAVEGDQKTAVLILGHADT---SGPTDANQKISQERAQSVAAIFRLSGLERNR 254

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +  + G      + A+D     + NRR++IL+  +
Sbjct: 255 L-SLRGMGAVMPRAANDSLQGRALNRRVEILMTPQ 288


>gi|315023542|gb|EFT36546.1| OmpA [Riemerella anatipestifer RA-YM]
          Length = 488

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 359 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 415

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 416 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 457


>gi|296280733|gb|ADH04664.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|225350154|gb|ACN87987.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|225350146|gb|ACN87983.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|225350140|gb|ACN87980.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|225350134|gb|ACN87977.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|225350128|gb|ACN87974.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|163750646|ref|ZP_02157883.1| OmpA family protein [Shewanella benthica KT99]
 gi|161329641|gb|EDQ00632.1| OmpA family protein [Shewanella benthica KT99]
          Length = 388

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           +  ETT    L SI        F  +SS+   E+   ++K+   +    E  + I GH  
Sbjct: 262 IYTETTEQRDLGSIQ-------FANNSSVVKTESFAHIEKLATYMNKKPESTVLISGHAS 314

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--A 330
                  A  N  LS  RA +  ++L++  G+S+DR+    GF   +  I  +   +  A
Sbjct: 315 DV---GKADYNMALSDKRAKAVAKILVEKYGISQDRVEA-KGFGITQAVIQGNSAEANKA 370

Query: 331 NRRID 335
           NRRI+
Sbjct: 371 NRRIE 375


>gi|156106757|gb|ABU49601.1| outer membrane protein [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|126046387|gb|ABN73088.1| OmpA [Riemerella anatipestifer]
 gi|126046398|gb|ABN73090.1| OmpA [Riemerella anatipestifer]
 gi|126046413|gb|ABN73093.1| OmpA [Riemerella anatipestifer]
 gi|225350132|gb|ACN87976.1| OmpA [Riemerella anatipestifer]
 gi|225350136|gb|ACN87978.1| OmpA [Riemerella anatipestifer]
 gi|225350138|gb|ACN87979.1| OmpA [Riemerella anatipestifer]
 gi|225350142|gb|ACN87981.1| OmpA [Riemerella anatipestifer]
 gi|225350144|gb|ACN87982.1| OmpA [Riemerella anatipestifer]
 gi|225350148|gb|ACN87984.1| OmpA [Riemerella anatipestifer]
 gi|225350150|gb|ACN87985.1| OmpA [Riemerella anatipestifer]
 gi|225350152|gb|ACN87986.1| OmpA [Riemerella anatipestifer]
 gi|225350156|gb|ACN87988.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|119382554|gb|ABL73889.1| outer membrane protein A [synthetic construct]
          Length = 395

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|119382556|gb|ABL73890.1| outer membrane protein A [synthetic construct]
          Length = 388

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|106647238|gb|ABF82272.1| outer membrane protein A precursor [Riemerella anatipestifer]
 gi|318068275|gb|ADV36925.1| outer membrane protein A [Riemerella anatipestifer]
 gi|318068277|gb|ADV36926.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235065|gb|AAT70735.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|728644|emb|CAA59448.1| MotB [Rhodobacter sphaeroides]
          Length = 332

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 12/180 (6%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78
               P    +W   +AD  T LMAFF+++      D+ +   +                T
Sbjct: 24  PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83

Query: 79  ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130
           +   + D   P       + D   D   +++  D              + K Q +  E  
Sbjct: 84  SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +    + +       SL R   +   L    + + + ++  +      + E++   +  +
Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSSRGPSRRSGRRAPERVTGARAAR 203


>gi|312962752|ref|ZP_07777240.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens WH6]
 gi|311282969|gb|EFQ61562.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens WH6]
          Length = 166

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + L+  GV+  ++  +S      +    D  + + NRR+++
Sbjct: 124 RYLVLQGVAPGQLELVSYGKERPVATGHDEQSWAQNRRVEL 164


>gi|300726777|ref|ZP_07060207.1| immunogenic 75 kDa protein PG4 [Prevotella bryantii B14]
 gi|299775890|gb|EFI72470.1| immunogenic 75 kDa protein PG4 [Prevotella bryantii B14]
          Length = 689

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   ++   +    E+   L ++  +L  +  V I +  H D   ++     N +LS  R
Sbjct: 519 DNIFYEFDKANLTSESTKALDELVNLLNENPNVTIELSAHCD---YKGSEDYNKQLSQRR 575

Query: 292 AYSAYQVLMKSGVSEDRISKISGFA 316
           A S    L+  G+++DR++ + G+ 
Sbjct: 576 AESVVNYLIAKGIAKDRLTPV-GYG 599


>gi|146298626|ref|YP_001193217.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153044|gb|ABQ03898.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 376

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 5/175 (2%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGIL 225
           + K   +    +  E +       R+ DL  +I +  S  +V +  V        +  + 
Sbjct: 205 LGKNTKHADWTVVSENVDLSAYDNRIADLENQIKNIPSKQVVVEKPVNNTTVVNDKDVVK 264

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
             I D+  +  FD + + P+  +   +  +   L  +    + I G+ D       A  N
Sbjct: 265 ELINDKYYSVYFDFNKATPIENSTAAIDVVLTYLRKNPSASLDIIGYADQV---GKAEYN 321

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            +LS  RA +   +  K+G++  R++ I   A   ++  S+      RR+   V+
Sbjct: 322 EKLSNQRAENVKTIFEKAGIASSRLNVIPAGADTSIQKDSEEARRLARRVTFKVK 376


>gi|86144088|ref|ZP_01062426.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
 gi|85829548|gb|EAQ48012.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
          Length = 638

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 103/296 (34%), Gaps = 30/296 (10%)

Query: 68  YFNPFGKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
           YF+  G+  +      ++D ++    +    ++ + D+     + D   G     +    
Sbjct: 349 YFSTDGRAGLGGLDVYVYDFESETLENVGAPVNSTKDDFTFIINSDTGKGFFASNRANDP 408

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           L+++I+    +         +     K         +    N           +      
Sbjct: 409 LDDDIYSFIKAACESTLIVKVVDKETKEPLNGALVGIRNLDNDLIASGSAEAPEATYTFQ 468

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI----------IDQ---RN 233
             +   +  A+   + + G + D  +  +  E++   +++ +           D     N
Sbjct: 469 DPECGEEYFAR---AEMEGYMTDEKLVEIPSESSEVTVILELEPAVTAIPPSFDLGKLIN 525

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD   S   P+  V L KI E+L    E  I +R HTD+   R     N  LS  R 
Sbjct: 526 PIYFDFDKSNIRPDAAVELAKIIEILKEYPELHIDVRSHTDS---RGNDAYNLALSERRN 582

Query: 293 YSAY-QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
            S    ++ + G++ +R+S   G+   +L          +   +  NRR + +V+D
Sbjct: 583 QSTIDYIVEEGGIARERLSG-RGYGETQLLNECSNGVDCTKEQHQLNRRSEFIVQD 637


>gi|304383837|ref|ZP_07366295.1| OmpA family protein [Prevotella marshii DSM 16973]
 gi|304335093|gb|EFM01365.1| OmpA family protein [Prevotella marshii DSM 16973]
          Length = 689

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 34/138 (24%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D + +   PE+   L ++ ++L  +  V I +R H D   +R     N  LS  R
Sbjct: 520 DNIFYDFNRATLRPESTAALDELVKLLQENPHVTIELRAHCD---YRGSDIYNKVLSQRR 576

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI----------------------------- 322
           A +    L+  G+++DR+S + G+   R KI                             
Sbjct: 577 AEAVTAYLVAHGIAKDRLSPV-GYGKERPKIIRRKLTERYPWMKEGDVLSESYIKRLDAS 635

Query: 323 ASDPMNSANRRIDILVED 340
             D  N  NRR + +V  
Sbjct: 636 RQDVCNQLNRRTEFIVLR 653


>gi|156325823|ref|XP_001618597.1| hypothetical protein NEMVEDRAFT_v1g224978 [Nematostella vectensis]
 gi|156199492|gb|EDO26497.1| predicted protein [Nematostella vectensis]
          Length = 563

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +D +     P ++  L  +   +  +   +S+  ++ A    N    N  LSL RA S  
Sbjct: 34  YDYNKDELRPSSVASLDTLVNFMNDNP-SLSVEIYSFADAHGNPQY-NRDLSLRRAESVM 91

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDILVEDRQG 343
             L  +G+   R++   GF       A+ +P           NRR ++ +    G
Sbjct: 92  SYLETAGIERSRMTA-KGFGESMPAAANKNPDGSDNPAGRQLNRRTELRIISDDG 145


>gi|59714204|ref|YP_206979.1| outer membrane protein [Vibrio fischeri ES114]
 gi|59482452|gb|AAW88091.1| outer membrane protein [Vibrio fischeri ES114]
          Length = 274

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              + ++   E           ++ A       ++L K++   L   V          ++
Sbjct: 76  PATVHQAKQNEARIARELEGGLQLDAANDLVIQRNLLKRLERQLD-YVKRQETCQPPTDS 134

Query: 220 TRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273
                 I +  + +  +     F  +S+   P+ IV L +  ++L  H    + I GH D
Sbjct: 135 NNGNSDIELAQKIHDLLNRDNQFAFNSAELNPKYIVNLSEASQLLNQHKDFKLLITGHAD 194

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332
           A         N  L+L+RA    + L   G+S+ RI   S  ++      ++P     NR
Sbjct: 195 AL---GEEDANQNLALERAKQVKRYLSIFGLSQQRIHVDSVGSNDPYLSGTEPHVRLTNR 251

Query: 333 RIDILVE 339
           R+ I + 
Sbjct: 252 RVTIELL 258


>gi|325275254|ref|ZP_08141211.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324099595|gb|EGB97484.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 323

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 82/213 (38%), Gaps = 16/213 (7%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+    +  K ++T +  K     +ST         ++         KI     +  
Sbjct: 36  PFGSDKVAEQEVKAAVTDNVAKADAKSESTSRWWWPFGGDDQQAKGPVVPKIDQQATQAW 95

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
           L +   K+   +     +   +  +   T   + +      + P      ++ LP ++  
Sbjct: 96  LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + ++ + +    +  + + GH D       A  N +LSL+RA S   +   SG+  DR++
Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADT---SGAAAANQKLSLERAASVSAIFRLSGLQRDRLT 203

Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
            + G      + A+D     + NRR+++L+  +
Sbjct: 204 -LKGMGSVMPRAANDSPEGRALNRRVEMLLTPQ 235


>gi|300870376|ref|YP_003785247.1| peptidoglycan-associated lipoprotein [Brachyspira pilosicoli
           95/1000]
 gi|300688075|gb|ADK30746.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Brachyspira pilosicoli 95/1000]
          Length = 194

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 20/144 (13%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTP-----------MFDKSSSIPLPETIVVLQKIGEV 258
           N+  GV    T  G ++ + D +               F    ++ + E       +  +
Sbjct: 38  NLPDGVRVRETPRGKVLELYDPKAKSDVGKQTGIYEVKFQFDKAVEIGEYKQAYNLVYTI 97

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L ++ E  I + G    S     A  N+ LS+ R+ ++Y  L+K G   +R+ K + F  
Sbjct: 98  LNNNPEIRIMVEG---NSSKEGKAPYNYNLSVRRSDTSYNYLIKLGTKNNRLLK-NAFGE 153

Query: 318 HRLKIASDPMNSANRRID-ILVED 340
              +    P   ANRR + I++ +
Sbjct: 154 GLPEY---PTLEANRRTEFIVIMN 174


>gi|238920737|ref|YP_002934252.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella
           ictaluri 93-146]
 gi|238870306|gb|ACR70017.1| peptidoglycan-associated lipoprotein, putative [Edwardsiella
           ictaluri 93-146]
          Length = 170

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGE 257
             +  G+ A  +       ++     + + + +   +  F        P+ +  L     
Sbjct: 31  DQSGMGMGAKGMENSSSNLSSDEQARLQMQELQKNNIVYFGLDKYDVTPDYMQELDAHAA 90

Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GF 315
            L  +    +++ GHTD    R     N  L   RA +    L   GVS D+I  +S G 
Sbjct: 91  FLRSNPSYKVTVEGHTDE---RGTPEYNIALGERRANAVKMYLQGKGVSADQIDIVSYGK 147

Query: 316 AHHRLKIASDPMNSANRR 333
               +    +   + NRR
Sbjct: 148 EKPAVLGHDEAAYAKNRR 165


>gi|161525435|ref|YP_001580447.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|171316170|ref|ZP_02905394.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|189349827|ref|YP_001945455.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616]
 gi|221201252|ref|ZP_03574292.1| OmpA family protein [Burkholderia multivorans CGD2M]
 gi|221206294|ref|ZP_03579307.1| OmpA family protein [Burkholderia multivorans CGD2]
 gi|221213575|ref|ZP_03586549.1| OmpA family protein [Burkholderia multivorans CGD1]
 gi|254252935|ref|ZP_04946253.1| OmpA/MotB [Burkholderia dolosa AUO158]
 gi|124895544|gb|EAY69424.1| OmpA/MotB [Burkholderia dolosa AUO158]
 gi|160342864|gb|ABX15950.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616]
 gi|171098679|gb|EDT43474.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|189333849|dbj|BAG42919.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616]
 gi|221166364|gb|EED98836.1| OmpA family protein [Burkholderia multivorans CGD1]
 gi|221173603|gb|EEE06037.1| OmpA family protein [Burkholderia multivorans CGD2]
 gi|221179102|gb|EEE11509.1| OmpA family protein [Burkholderia multivorans CGD2M]
          Length = 222

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 96  QADALFDFDKATLKPLGKQKLDELASKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV  ++I    G             N  N           RR+++ V 
Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209

Query: 340 DRQ 342
             Q
Sbjct: 210 GTQ 212


>gi|115350969|ref|YP_772808.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|170698423|ref|ZP_02889496.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|172059974|ref|YP_001807626.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|115280957|gb|ABI86474.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
 gi|170136676|gb|EDT04931.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|171992491|gb|ACB63410.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6]
          Length = 222

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 96  QADALFDFDKATLKPLGKQKLDELASKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV  ++I    G             N  N           RR+++ V 
Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209

Query: 340 DRQ 342
             Q
Sbjct: 210 GTQ 212


>gi|149375118|ref|ZP_01892890.1| OmpA/MotB domain protein [Marinobacter algicola DG893]
 gi|149360482|gb|EDM48934.1| OmpA/MotB domain protein [Marinobacter algicola DG893]
          Length = 192

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  ++    E   VL      L  +    + I GH D    R     N  L   RA + 
Sbjct: 91  FDFDTAEIKAEAREVLVAHARFLQANPGQNVRIEGHADE---RGTKEYNLALGERRANAI 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            + L+ +G S  +   IS +   +  +  +S+   + NRR++++
Sbjct: 148 ERFLIVNGASRGQTETIS-YGEEKPAVMGSSESAWAQNRRVELV 190


>gi|148547176|ref|YP_001267278.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1]
 gi|148511234|gb|ABQ78094.1| OmpA/MotB domain protein [Pseudomonas putida F1]
          Length = 435

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +  +Q++ E L  +        + G  D   +P R        LS  R
Sbjct: 334 FQEGSARLDNKALRDVQRVAEYLRQAGKLQGKAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +  + L + GV    + +++G         ++       NRR+++ V
Sbjct: 389 AQAVRRELARGGVE---VLQVTGMGDELPVAGNEQEQGRLRNRRVEVWV 434


>gi|332290107|ref|YP_004420959.1| peptidoglycan-associated outer membrane lipoprotein [Gallibacterium
           anatis UMN179]
 gi|330433003|gb|AEC18062.1| peptidoglycan-associated outer membrane lipoprotein [Gallibacterium
           anatis UMN179]
          Length = 150

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F        PE   +L    + L  ++  + + GHTD  P       N  
Sbjct: 41  ELQQRYNTVYFGFDKYDIQPEYAQLLDAHAQYLTDTSSKVQVEGHTD--PRGTPEY-NIA 97

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   GV   ++S IS +   +  +   ++   + +RR
Sbjct: 98  LGQRRADAVKSYLEGKGVQGGQLSTIS-YGEEKPAVLGHTEADYAKDRR 145


>gi|289673872|ref|ZP_06494762.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 447

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKTSGKLDQHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|197336852|ref|YP_002158687.1| OmpA family protein [Vibrio fischeri MJ11]
 gi|197314104|gb|ACH63553.1| OmpA family protein [Vibrio fischeri MJ11]
          Length = 274

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
              + ++   E           ++ A       ++L K++   L   V          ++
Sbjct: 76  PATVHQAKQNEARIARELEGGLQLDAANDLVIQRNLLKRLERQLD-YVKRQETCQPPTDS 134

Query: 220 TRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273
                 I +  + +  +     F  +S+   P+ IV L +  ++L  H    + I GH D
Sbjct: 135 NNGNSDIELAQKIHDLLNRDNQFAFNSAELNPKYIVNLSEASQLLNQHKDFKLLITGHAD 194

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332
           A         N  L+L+RA    + L   G+S+ RI   S  ++      ++P     NR
Sbjct: 195 AL---GEEDANQNLALERAKQVKRYLSIFGLSQQRIHVDSVGSNDPYLSGTEPHVRLTNR 251

Query: 333 RIDILVE 339
           R+ I + 
Sbjct: 252 RVTIELL 258


>gi|183598397|ref|ZP_02959890.1| hypothetical protein PROSTU_01791 [Providencia stuartii ATCC 25827]
 gi|188020575|gb|EDU58615.1| hypothetical protein PROSTU_01791 [Providencia stuartii ATCC 25827]
          Length = 357

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + +   PE    L ++   L+        + + G TD          N  LS
Sbjct: 229 RSDVLFNFNKATLKPEGQQALNELYNELSSIDPTQGRVLVVGFTDRI---GSQNYNLPLS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA S    L+  GV    I+   G         +   N           + +RR++I 
Sbjct: 286 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDNVKGRAALIECLAPDRRVEIE 344

Query: 338 VE 339
           ++
Sbjct: 345 IQ 346


>gi|92119081|ref|YP_578810.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91801975|gb|ABE64350.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 673

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S    P+    L+ I + +  +     +EV  I GHTDA        DN  LS  R
Sbjct: 552 FATGSWDIPPDQAAKLRVIADGINRAISRNPSEVFLIEGHTDAV---GNDVDNLSLSDRR 608

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA ++L +            G+    LK+ +D  +  NRR+ +
Sbjct: 609 AQSAAELLTQQFQVPPENLVTQGYGEQNLKVETDGPSRENRRVTV 653


>gi|62185545|ref|YP_220330.1| putative peptidoglycan-associated protein (periplasmic)
           [Chlamydophila abortus S26/3]
 gi|62148612|emb|CAH64384.1| putative peptidoglycan-associated protein (periplasmic)
           [Chlamydophila abortus S26/3]
          Length = 191

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 87  FATDSYTIKGEENLAILSSLVRQMQKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
             Q L+K G+S DR+  +S +   +   +     +   NRR +  +  R
Sbjct: 144 VKQHLIKQGISADRLFTVS-YGKEQPINSGHNELAWQQNRRTEFKIHAR 191


>gi|268316443|ref|YP_003290162.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333977|gb|ACY47774.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252]
          Length = 496

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           + L  D++   ++ E T   ++ ++     +  F+   S        VL++   VL    
Sbjct: 361 NELGRDSVQARIVVEPTACDLISTL----ESVSFEFGRSTLTDSARAVLERNARVLQSCP 416

Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLK 321
           E V+ + G+TD   +      N  LSL RA + Y    + G+  +R I +  G       
Sbjct: 417 ELVVQLVGYTD---YVGGEAFNALLSLRRALAVYNYYQQQGIEPERLIFR--GLGELPPP 471

Query: 322 IASDPMNS---ANRRIDILVED 340
             +          RR+D +V  
Sbjct: 472 CPNPADRPGCRELRRVDTIVIR 493


>gi|78065624|ref|YP_368393.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77966369|gb|ABB07749.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 222

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 96  QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV  ++I    G             N  N           RR+++ V 
Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209

Query: 340 DRQ 342
             Q
Sbjct: 210 GTQ 212


>gi|107022117|ref|YP_620444.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116689062|ref|YP_834685.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|170732350|ref|YP_001764297.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|206561293|ref|YP_002232058.1| putative ompA family protein [Burkholderia cenocepacia J2315]
 gi|254245998|ref|ZP_04939319.1| Outer membrane protein, OmpA/MotB family [Burkholderia cenocepacia
           PC184]
 gi|105892306|gb|ABF75471.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116647151|gb|ABK07792.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424]
 gi|124870774|gb|EAY62490.1| Outer membrane protein, OmpA/MotB family [Burkholderia cenocepacia
           PC184]
 gi|169815592|gb|ACA90175.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3]
 gi|198037335|emb|CAR53262.1| putative ompA family protein [Burkholderia cenocepacia J2315]
          Length = 222

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 96  QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV  ++I    G             N  N           RR+++ V 
Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209

Query: 340 DRQ 342
             Q
Sbjct: 210 GTQ 212


>gi|262276102|ref|ZP_06053911.1| peptidoglycan-associated outer membrane lipoprotein [Grimontia
           hollisae CIP 101886]
 gi|262219910|gb|EEY71226.1| peptidoglycan-associated outer membrane lipoprotein [Grimontia
           hollisae CIP 101886]
          Length = 173

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278
           T   I  + + Q  T  F       LP+   +L    E L A++   + + GH D    R
Sbjct: 56  TEQEIRNNELRQSQTVYFSFDDYSVLPQFEDMLDAHAEFLRANADIKVVVEGHADE---R 112

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
                N  L   RA +  + L   GV   +IS +S +   +  +     ++   NRR
Sbjct: 113 GTPEYNIALGERRANAVAKYLQALGVPSSQISIVS-YGEEKPLVLGQGEDAYSKNRR 168


>gi|260581134|ref|ZP_05848955.1| outer membrane protein P5 [Haemophilus influenzae RdAW]
 gi|260092263|gb|EEW76205.1| outer membrane protein P5 [Haemophilus influenzae RdAW]
          Length = 353

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 349


>gi|229846196|ref|ZP_04466308.1| Outer membrane protein P5 [Haemophilus influenzae 7P49H1]
 gi|229811200|gb|EEP46917.1| Outer membrane protein P5 [Haemophilus influenzae 7P49H1]
          Length = 359

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 246 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 303 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355


>gi|206603884|gb|EDZ40364.1| Putative Outer membrane protein, OmpAfamily [Leptospirillum sp.
           Group II '5-way CG']
          Length = 521

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 224 ILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281
           +L  I D     + F    +        +L++   +L       I + GH+D    R   
Sbjct: 75  LLRRIQDLSRQDLSFATGKADLNQRDRRILREDAVLLKRYPKVEILLIGHSDE---RGNE 131

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             N+RL LDR  SA Q L   G++  RI  +S
Sbjct: 132 IYNFRLGLDRGKSARQFLEDLGIAASRIHVVS 163


>gi|145641242|ref|ZP_01796822.1| Outer membrane protein P5 [Haemophilus influenzae R3021]
 gi|145274079|gb|EDK13945.1| Outer membrane protein P5 [Haemophilus influenzae 22.4-21]
          Length = 358

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354


>gi|145639315|ref|ZP_01794921.1| Outer membrane protein P5 [Haemophilus influenzae PittII]
 gi|145271618|gb|EDK11529.1| Outer membrane protein P5 [Haemophilus influenzae PittII]
          Length = 361

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 248 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 304

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 305 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 357


>gi|145631210|ref|ZP_01786983.1| Outer membrane protein P5 [Haemophilus influenzae R3021]
 gi|144983137|gb|EDJ90632.1| Outer membrane protein P5 [Haemophilus influenzae R3021]
          Length = 314

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 201 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 257

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 258 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 310


>gi|145627861|ref|ZP_01783662.1| Outer membrane protein P5 [Haemophilus influenzae 22.1-21]
 gi|144979636|gb|EDJ89295.1| Outer membrane protein P5 [Haemophilus influenzae 22.1-21]
          Length = 358

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354


>gi|37704660|gb|AAR01602.1| OprF [Pseudomonas sp. MFY160]
          Length = 316

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+    +   ++ + + +       + + GHTD+         N +LS  RA + 
Sbjct: 233 FDFDKSVVKTNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316


>gi|330830632|ref|YP_004393584.1| major outer membrane protein OmpAII [Aeromonas veronii B565]
 gi|328805768|gb|AEB50967.1| Major outer membrane protein OmpAII [Aeromonas veronii B565]
          Length = 345

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    +    E +  L  + + +           + G+TD         +N RLS  RA
Sbjct: 225 LFAFGKADLKQEGMSALDDLYQQIVDVQPKDGSAVVIGYTDRI---GSDANNQRLSEARA 281

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G+  D++  I G         +  D + +          +RR+++ V   
Sbjct: 282 QTVADFLISKGLPADKV-SIQGNGASNPVTGNQCDAIKAKAALIDCLGPDRRVEVRVTGV 340

Query: 342 QG 343
           QG
Sbjct: 341 QG 342


>gi|307726644|ref|YP_003909857.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587169|gb|ADN60566.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 357

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD    +  LP     L ++   L   +    ++I G+TD          N RLSL RA 
Sbjct: 245 FDGGNDAAMLPAGRRELDEVARSLKTVSALRELAITGYTDRL---GENAHNQRLSLQRAQ 301

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDI 336
           +  + L   GV+      + G A  +                 + NRR++I
Sbjct: 302 TVARYLRAHGVTSP--ISVRGLASAKPVTECRQTRRDELVRCLAPNRRVEI 350


>gi|242240116|ref|YP_002988297.1| outer membrane protein A [Dickeya dadantii Ech703]
 gi|242132173|gb|ACS86475.1| OmpA domain protein transmembrane region-containing protein
           [Dickeya dadantii Ech703]
          Length = 354

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD        + N  LS
Sbjct: 226 KSDVLFNFNKATLKPEGQRSLDQLYTQLSTIDPKDGSVVVLGFTDRL---GSDQYNQTLS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337
             RA S    L+  GV  ++IS   G            A+    +A       +RR++I 
Sbjct: 283 TKRAQSVVDYLVHKGVPANKISA-RGMGKANPVSGATCANVKARAALIDCLAPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|240948744|ref|ZP_04753116.1| lipoprotein Plp4 [Actinobacillus minor NM305]
 gi|240296960|gb|EER47538.1| lipoprotein Plp4 [Actinobacillus minor NM305]
          Length = 282

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  + + + G+TD          N  LS  R
Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAQQVKVAGYTDRL---GSVNYNLDLSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
           A      L++ GV   +I  +  G A+       +   +       NRR++I
Sbjct: 198 ANMVKARLVQQGV-TAQIEAVGYGKANQVKACDGESGQALRDCLRPNRRVEI 248


>gi|283955187|ref|ZP_06372689.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793400|gb|EFC32167.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 247

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 32/190 (16%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++  K+  K+ +  KS  KEE+  L  L +  +   +  KRLQ    +  + +    A 
Sbjct: 60  STQTVKEESKTQEKYKSTAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQI----AL 115

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266
           N+   V                     F++ S+     +    L+++ E+  +      I
Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            IRG+TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P
Sbjct: 156 EIRGYTDNSDSILRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210

Query: 327 MNSANRRIDI 336
               N R++I
Sbjct: 211 QTLENNRVEI 220



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD  +      ++K          + S +LK        Q + ++     L  
Sbjct: 53  ----VKIFDYTSTQTVKEESKTQEKYKSTAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183
           S            + E+G     S D++  + +      +LPP +K +I
Sbjct: 109 SDNQIALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157


>gi|251792544|ref|YP_003007270.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700]
 gi|247533937|gb|ACS97183.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700]
          Length = 363

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  + +   P     L  I   +A       +++ G+TD     + A  N +LS  RA +
Sbjct: 250 FAFNKANLRPNAQATLDGIYSEIAKVNKPN-VAVSGYTD--RIGSDAY-NQKLSQKRAET 305

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDILVEDRQ 342
               L+  GV++D IS  +G+        +               + +RR++I V   Q
Sbjct: 306 VANYLVSKGVAQDTISA-TGYGKANPVTGNQCNAVKGRKALIACLADDRRVEIAVNGNQ 363


>gi|150006545|ref|YP_001301289.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
 gi|254881554|ref|ZP_05254264.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA]
 gi|294778836|ref|ZP_06744253.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|319642938|ref|ZP_07997574.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A]
 gi|149934969|gb|ABR41667.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482]
 gi|254834347|gb|EET14656.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA]
 gi|294447289|gb|EFG15872.1| OmpA family protein [Bacteroides vulgatus PC510]
 gi|317385486|gb|EFV66429.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A]
          Length = 364

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           +  AK     +   V   +V+ V  E  +  I            F    +    E +V +
Sbjct: 223 KKFAKVEDRVVEKEVIKEVVREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISSEGMVNV 282

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           Q + + +  +      I G  D +     A  N  LS  RA + Y  L+  GV E ++ K
Sbjct: 283 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 340

Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337
           ++          +D M   N   R+ IL
Sbjct: 341 VAMGG-------TDNMFGKNYLNRVVIL 361


>gi|57505391|ref|ZP_00371319.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis
           RM3195]
 gi|57016216|gb|EAL53002.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis
           RM3195]
          Length = 244

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 4/186 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F     + 
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISETNPAKVEALKTEFVKI-FDY 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T      + QN  + +  ++      E + + ++  +      K    + EN I     
Sbjct: 59  TTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQETIKKLKAALDQSENQIALNLP 118

Query: 137 SQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           S+  E  KNS    S   +D L +   L  S+  +    +   +     A++  +   + 
Sbjct: 119 SR-VEFAKNSAEIVSADMQDYLKRMAQLSLSLPPQAKIEIRGFTDNSDSALRSFELGYER 177

Query: 196 AKKISS 201
           AK + +
Sbjct: 178 AKAVMN 183



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 30/208 (14%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKR 191
            +N  + E  K    +  +        T+ + +         P    E  K L + +++ 
Sbjct: 39  ETNPAKVEALKTEFVKIFDYTTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQET 98

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIV 250
           ++ L   +  +    +A N+   V                     F K+S+     +   
Sbjct: 99  IKKLKAALDQS-ENQIALNLPSRVE--------------------FAKNSAEIVSADMQD 137

Query: 251 VLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            L+++ ++         I IRG TD     + A  ++ L  +RA +     +  GVS ++
Sbjct: 138 YLKRMAQLSLSLPPQAKIEIRGFTDN---SDSALRSFELGYERAKAVMNYFIDGGVSVEK 194

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  I  +  +   +     + AN R++I
Sbjct: 195 L-SIKSYGFNEPLLNHASSDLANNRVEI 221


>gi|162451716|ref|YP_001614084.1| hypothetical protein sce3444 [Sorangium cellulosum 'So ce 56']
 gi|161162298|emb|CAN93603.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 357

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F        P +  +L  + ++L    ++  + +  +  +    N A     L+  RA +
Sbjct: 135 FVAGKPEFEPASQGLLANVAQILKDHPQIQFVEVAAY--SEKVGNDAATV-TLTKKRAEA 191

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQG 343
             + L   GV ++R+ + +G+  H      +   +   NRR++I +    G
Sbjct: 192 VVKALTALGVEKNRV-RAAGYGAHCATDPGETEEAKEKNRRVEIKIMRLDG 241


>gi|19881367|gb|AAM00926.1|AF491818_1 hemagglutinin antigen [Avibacterium paragallinarum]
 gi|19881373|gb|AAM00929.1|AF491821_1 hemagglutinin antigen [Avibacterium paragallinarum]
 gi|19881385|gb|AAM00935.1|AF491827_1 hemagglutinin antigen [Avibacterium paragallinarum]
          Length = 341

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE   VL  I   +A   +  + + G+TD          N +LS  RA + 
Sbjct: 228 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 284

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
              L+  GV+++ IS  +G+        +  D +            +RR++I V+
Sbjct: 285 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 338


>gi|239833809|ref|ZP_04682137.1| OmpA/MotB domain-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239821872|gb|EEQ93441.1| OmpA/MotB domain-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 765

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+     +VLA        I GHTDA       R N  LS  R
Sbjct: 651 FATGSAEVSMSQAKTLRKVATAMQKVLAKDPGETFFIEGHTDAV---GSDRSNLVLSDKR 707

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +            G+    LKI +      NRR+ I
Sbjct: 708 AESVASLLTEVYDIPAENLVTQGYGERFLKIRTQAAEQENRRVTI 752


>gi|39995135|ref|NP_951086.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39981897|gb|AAR33359.1| OmpA domain protein [Geobacter sulfurreducens PCA]
 gi|298504165|gb|ADI82888.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens
           KN400]
          Length = 194

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
               FD  + +        L +  E +L       +SI GH D    R     N  L   
Sbjct: 87  ERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNAKVSIEGHCDE---RGSDEYNLALGEK 143

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           RA +A   L+  GV   R+S IS +   +           + NRR + ++
Sbjct: 144 RAKTAMNYLITLGVPAARLSIIS-YGEEKPLDPGHTEEAWAKNRRDEFVI 192


>gi|262068311|ref|ZP_06027923.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
 gi|291377972|gb|EFE85490.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
          Length = 122

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           +I+       FD   S+  P+   +L  + + +  +   +++ GHTD+    +    N  
Sbjct: 28  TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIG 84

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           LS  RA +    L++ G++E+RI  I           +
Sbjct: 85  LSRRRAEAVKAKLIEFGLAEERIVGIEAKGEEYPVATN 122


>gi|238896049|ref|YP_002920785.1| putative outer membrane lipoprotein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262043847|ref|ZP_06016937.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|238548367|dbj|BAH64718.1| iron-regulated membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259038817|gb|EEW39998.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 160

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           ++ +FDK+     P++   +  +   LA +      + GHTD          N  LSL R
Sbjct: 52  DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338
           A S        G    R + ++ G        ++D     + NRR+ +++
Sbjct: 109 ANSVADA-WAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 157


>gi|330831536|ref|YP_004394488.1| outer membrane protein A [Aeromonas veronii B565]
 gi|328806672|gb|AEB51871.1| Outer membrane protein A [Aeromonas veronii B565]
          Length = 364

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F+ + +   P     L  +  +++A +    V ++ G+TD          N  LS  RA
Sbjct: 245 LFEFNKATLKPAANQALDALFSQIVAANPKDGVATVIGYTDRI---GSDNYNLALSEKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----------PMNSANRRIDILVE 339
            S    L+  G+  D++ ++ G         S              + +RR++I +E
Sbjct: 302 QSVASYLVSKGLYADKV-RVEGRGKANPVTGSSCASRSKQELIACLAPDRRVEIHLE 357


>gi|315104919|gb|EFT76895.1| OmpA family protein [Propionibacterium acnes HL050PA2]
          Length = 284

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 11/175 (6%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
                     SQ      N +  D   G  L   T  +++     N  +P       L  
Sbjct: 101 FSTPPLRADVSQVDVTVANRIFHDVPVGDGLLGPTIDKEAATGRWNKGMPLGVAWPALDP 160

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K    + D++K +++ ++     +         T+  + I   D   + +FD  S +  P
Sbjct: 161 KDLAGV-DVSKFVNALVTTT--GDASDASRERVTKESMKI---DLDASVLFDLDSDVVKP 214

Query: 247 ETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             + ++ +  + L     +  I + G+TD+      A  N  LS  RA S  +VL
Sbjct: 215 AGLQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLDLSRRRAASVAKVL 266


>gi|163733522|ref|ZP_02140965.1| peptidoglycan-associated lipoprotein, putative [Roseobacter
           litoralis Och 149]
 gi|161393310|gb|EDQ17636.1| peptidoglycan-associated lipoprotein, putative [Roseobacter
           litoralis Och 149]
          Length = 173

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S         ++   + +LA++     I GH D          N  L   R
Sbjct: 63  DRVLFSVDESAINAVGQTTVEGQAQWLLANTDYTAVIEGHADEQ---GTREYNVALGARR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +  + L+  GV+ +R+  +S +   R     +S+   + NRR
Sbjct: 120 ANAVREYLISRGVAGNRLQTVS-YGKERPIEICSSEECYAKNRR 162


>gi|114563969|ref|YP_751483.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114335262|gb|ABI72644.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 215

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+ L      L ++ + +       I + GHTD      + R    LSL RA + 
Sbjct: 111 FDFDKSVVLLTQRPTLVRVQQYIEQHPQVAIRLEGHTDNIGSDAVNRS---LSLKRAATI 167

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +L+     +    +I G ++      +        NRR++ ++
Sbjct: 168 KDLLVNEYQFQPTSIEIVGMSNKNPVADNATIEGRQRNRRVEFII 212


>gi|302186190|ref|ZP_07262863.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642]
          Length = 447

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L         +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|329962616|ref|ZP_08300564.1| OmpA family protein [Bacteroides fluxus YIT 12057]
 gi|328529647|gb|EGF56545.1| OmpA family protein [Bacteroides fluxus YIT 12057]
          Length = 397

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTP---MF 237
           ++++      +QD   ++ +    L  A    +    E      +I + D    P    F
Sbjct: 241 QLVSQAELAIMQDQLAELGAANQQLQNALTAAQNQPVEEVAETEVI-LTDPDIAPRTVFF 299

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +  S+       + L  + + +        ++ G+ D++        N  LSL RA +  
Sbjct: 300 NIGSAEVSAREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRAQAVV 357

Query: 297 QVLMKS-GVSEDRI 309
            VL+K  G+  DR+
Sbjct: 358 DVLVKQYGIPADRL 371


>gi|90408384|ref|ZP_01216546.1| OmpA family protein [Psychromonas sp. CNPT3]
 gi|90310477|gb|EAS38600.1| OmpA family protein [Psychromonas sp. CNPT3]
          Length = 201

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S +     +  ++ + + +    +  ++I GHT     R  A  N  LS  RA   
Sbjct: 79  FETDSYVVSSNYLPKIEHLSQFMHEYPQTTVTIEGHTSH---RGTASYNKILSQQRADMI 135

Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRI--DI 336
            ++L++   V   RI+ I G+   +L +  D    ++ NRRI  +I
Sbjct: 136 KKILIEEYQVEASRITAI-GYGFDQLLLEGDDEYVHARNRRIVAEI 180


>gi|323496692|ref|ZP_08101743.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
 gi|323318274|gb|EGA71234.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326]
          Length = 204

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLS 288
           +++   +F   S    P     +Q + E L  + +  I I+G   AS        N  LS
Sbjct: 78  ERQLRILFANDSYEINPIFSDQIQTMAEFLEKYQSASIQIQGF--ASKVGEPEY-NLELS 134

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
             RA++    L+   V   R+  I G+   RL+     +  ++ NR++ 
Sbjct: 135 KKRAHAVEDELLSYYVEPSRV-SIIGYGETRLEAQGDDETSHALNRKVT 182


>gi|291278841|ref|YP_003495676.1| hypothetical protein DEFDS_0426 [Deferribacter desulfuricans SSM1]
 gi|290753543|dbj|BAI79920.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 268 IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS 324
           I GHTD+ P +  N  R+N+ LS+ RA    +++ K SG+  +  +KI GF      +++
Sbjct: 126 IYGHTDSLPVKPNNKYRNNYELSILRAEFIKELIRKYSGIDSN--AKIVGFGAFFPLVSN 183

Query: 325 D-PMNSANRRIDI 336
                  NRR+++
Sbjct: 184 GLQGAEKNRRVEL 196


>gi|269123085|ref|YP_003305662.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268314411|gb|ACZ00785.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2075

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 27/187 (14%)

Query: 155  KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
              L +   + K + ++ N  +   +K         K L++L  KIS      V + I   
Sbjct: 1908 NSLDELDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKIS------VIEKIKMN 1961

Query: 215  VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHT 272
                 T  G  + I                      +L+ I   L  +     I I G+T
Sbjct: 1962 EDDLYTLDGYRLGIH-------------ELTKSQEEMLKNIVRELNENYKNRKIYITGYT 2008

Query: 273  DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED---RISKISGFAHHRLKIASDPMNS 329
            D     +    N  L L RA    + L + G+      R    SG+ +      S    S
Sbjct: 2009 DNV---SGENLNLELGLKRANVVAKKLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRS 2065

Query: 330  ANRRIDI 336
            +NRR++I
Sbjct: 2066 SNRRVEI 2072


>gi|150396796|ref|YP_001327263.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150028311|gb|ABR60428.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419]
          Length = 720

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V + + +VL         I GHTDA       + N  LS +R
Sbjct: 606 FATGSAEVSMSQAKTMRKVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 662

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  GV  + +    G+    LKI +D     NRR+ I
Sbjct: 663 AESVAVLLTEVYGVPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 707


>gi|330982164|gb|EGH80267.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 447

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKTSGKLDQHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|88861307|ref|ZP_01135938.1| outer membrane protein A [Pseudoalteromonas tunicata D2]
 gi|88816686|gb|EAR26510.1| outer membrane protein A [Pseudoalteromonas tunicata D2]
          Length = 358

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +FD   S         L+ +   LA + +   ++ G+TD+         N +L+L RA
Sbjct: 252 FALFDFDKSAVKE--TQALKDLAAHLAANPQAQAAVTGYTDSQ---GSKEYNEKLALRRA 306

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            +  + L  +GV+  +++ +       L  ++  +     NRR+ I
Sbjct: 307 NAIAKYLTANGVNASQLT-VKSVGETDLFASNATIAERLNNRRVTI 351


>gi|190574772|ref|YP_001972617.1| putative OmpA family protein [Stenotrophomonas maltophilia K279a]
 gi|190012694|emb|CAQ46322.1| putative OmpA family protein [Stenotrophomonas maltophilia K279a]
          Length = 300

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 14/111 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F   S++   E    +Q I  +V   +    I + G+TD     + +  N  LS  RA 
Sbjct: 187 LFGFDSAVLSAEGQQAVQGILAQVREAAQVQSIRVTGYTD--RIGSASY-NQTLSQQRAE 243

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           +    L++ GV    IS   G       +  +  N          NRR+ I
Sbjct: 244 AVRSALVQGGVPAASISA-EGRGAAEPIVQCEQRNRRELIACLAPNRRVQI 293


>gi|170720335|ref|YP_001748023.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169758338|gb|ACA71654.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 327

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 24/217 (11%)

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
            + S+    +  K ++T    K     +S          ++         KI     +  
Sbjct: 36  PFGSDEVAEQEVKQAVTEKVAKADAKSESASRWWWPFGGDDKQAKGPVVPKIDEKATQAW 95

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPE 247
           L     K+   +           +  E     ++++I        + P      ++ LP 
Sbjct: 96  LDQYEPKLREAIKD-------SKLELERRENVLVVTIPADSSYNPDRP------NMLLPM 142

Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
           ++  + ++ + +    +  + + GH D       A  N +LSL+RA S   +   SG+  
Sbjct: 143 SLGPITRVAKAVEGDPKTAVLVLGHADT---SGAAATNQKLSLERAASVSAIFRLSGLKR 199

Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           DR+  + G      + A+D     + NRR+++L+  +
Sbjct: 200 DRL-SLKGMGSEMPRAANDSVEGRALNRRVEMLLTPQ 235


>gi|217970135|ref|YP_002355369.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|217507462|gb|ACK54473.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 232

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++   E    L ++          + +  GHTD          N RLS  RA +
Sbjct: 118 LFDFDKAVLKAEGKAKLDQLAAQAKSLKLEVILAVGHTDRL---GSNTYNQRLSERRAAA 174

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD----PMNSAN-------RRIDILV 338
               L+  GV  +R+    G    +    +        +A        RR+++ V
Sbjct: 175 VKTYLVSKGVDANRVY-TEGKGETQPVTGNKCDKVGGRAAQISCLQPDRRVEVEV 228


>gi|163795725|ref|ZP_02189690.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159179021|gb|EDP63556.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 313

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 21/229 (9%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           + G+ +     +    NI   +   + E  +  L    + G+ +         +      
Sbjct: 81  RAGAGDTPMPVELANRNIANPTKLAELEAARADLVSTLQTGRTIAP-------VEAGVAQ 133

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
                  E+     +   +          +  L A      V +ET +  +       RN
Sbjct: 134 AKFDCWAEQQEEGHQFDHIAACQTAYLMAMEALKAAMQPTNVTYETVQQEV------ARN 187

Query: 234 TPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           T  FD       P+    L K + E+ A     + I GHTD          N  LS  RA
Sbjct: 188 TVYFDWDKDTIRPDQQAALDKFLAEMKAIGPVTLYIEGHTDT---SGPNDYNAELSRRRA 244

Query: 293 YSAYQVLMKSGVSEDRI--SKISGFAHHRLKIASDPM--NSANRRIDIL 337
            +    L + G++   +   ++     + L +A+        NRR+ I+
Sbjct: 245 ENVRTDLRQQGMTVGEVKDLQLLAKGENDLAVATGDGVKEQQNRRVVII 293


>gi|138894940|ref|YP_001125393.1| putative periplasmic protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248493|ref|ZP_03147194.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16]
 gi|134266453|gb|ABO66648.1| Putative periplasmic protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212218|gb|EDY06976.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16]
          Length = 223

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 33/175 (18%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSS 242
           ++ L++  KKI   +S  V   I++ +     ++ + I I  Q        + +F+  S+
Sbjct: 38  RELLEEKEKKIEQVVS--VKSEIIRALTEAFKQSNMTIEIDQQTGAIRFPGSILFESDSA 95

Query: 243 IPLPETIVVLQK-----IGEVLAHS-TEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293
              PE    LQ+     +G +L       IS   I GHTD +        N  LS  RAY
Sbjct: 96  EISPEGKKFLQQFIPKYMGILLQDRFQNEISSIIIEGHTDRN---GTYMYNMSLSQRRAY 152

Query: 294 SAYQVLMKSGVS-------EDRISKISGFAHHRLKIAS----DPMNSANRRIDIL 337
           +  + +               +    +G +            DP  S  RR++ L
Sbjct: 153 AVLEYIYSKEFPNFKERELSKKYITANGRSFSSPLTDENGKYDPDRS--RRVEFL 205


>gi|170693710|ref|ZP_02884868.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170141492|gb|EDT09662.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 215

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   ++  P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKAVLKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|134295071|ref|YP_001118806.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134138228|gb|ABO53971.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 223

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  G+  ++I    G             N  N           RR+++ V 
Sbjct: 154 RAQAVKSYLVSKGIPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 210

Query: 340 DRQ 342
             Q
Sbjct: 211 GTQ 213


>gi|307729365|ref|YP_003906589.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583900|gb|ADN57298.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 242

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 229 IDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD 283
               +  +F    S     LP     L +I   +     V  I++ GHTD          
Sbjct: 120 FSLESDTLFPFGKSSRESMLPAAKARLDEIAARIRQHEHVSAITVVGHTDRL---GPESI 176

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRID 335
           N  LSL RA +    L+  G+    +    G      +      ++         +R + 
Sbjct: 177 NGPLSLARANTVRDYLVAHGLDGSIVLA-KGVGSSEPRTHCAEHDARALIACLQEDRYVS 235

Query: 336 ILVEDRQ 342
           I VE R+
Sbjct: 236 ITVEGRK 242


>gi|145635014|ref|ZP_01790720.1| outer membrane protein P5 [Haemophilus influenzae PittAA]
 gi|145267622|gb|EDK07620.1| outer membrane protein P5 [Haemophilus influenzae PittAA]
          Length = 355

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 242 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 298

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 299 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 351


>gi|89897844|ref|YP_514954.1| outer membrane protein [Chlamydophila felis Fe/C-56]
 gi|89331216|dbj|BAE80809.1| outer membrane protein [Chlamydophila felis Fe/C-56]
          Length = 191

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 87  FATDSYTIKGEENLAILSSLVRQMQKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
             Q L+K G+S +R+  IS +   +   +     +   NRR +  V  R
Sbjct: 144 VKQHLIKQGISPERLFTIS-YGKEQPINSGHNELAWQQNRRTEFKVHAR 191


>gi|261252913|ref|ZP_05945486.1| outer membrane protein [Vibrio orientalis CIP 102891]
 gi|260936304|gb|EEX92293.1| outer membrane protein [Vibrio orientalis CIP 102891]
          Length = 203

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SSI  P  +  ++++ E L       I ++G+  AS        N +LS  RA +
Sbjct: 83  LFQNDSSIIQPMFLAQIREMSEFLEAYPSTSIELQGY--ASKVGKAEY-NQKLSERRAEA 139

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRI 334
               L+ +GVS  R+ +I GF   RL      +  ++ NR++
Sbjct: 140 VEAALLDNGVSSSRV-RIVGFGDTRLDELGDDEVSHAMNRKV 180


>gi|84515731|ref|ZP_01003092.1| OmpA/MotB family protein [Loktanella vestfoldensis SKA53]
 gi|84510173|gb|EAQ06629.1| OmpA/MotB family protein [Loktanella vestfoldensis SKA53]
          Length = 307

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L ++   LA   +  +++ GHTD+         N  LS  RA + 
Sbjct: 202 FTIGSAQLSEAAFASLAELAAYLAAYPDRSVALVGHTDS---AGALDINIALSQRRARAV 258

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              L+       R     G  +     ++  +    ANRR++++V  
Sbjct: 259 LDRLVTRHGVNRRQLAAEGMGYLAPIASNQTETGRDANRRVEVIVTS 305


>gi|327252310|gb|EGE63982.1| ompA family protein [Escherichia coli STEC_7v]
          Length = 127

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G    R     G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRRNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|295110189|emb|CBL24142.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Ruminococcus obeum A2-162]
          Length = 331

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 102/338 (30%), Gaps = 67/338 (19%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           +       N    W+  Y+D M  ++  F+++  +                         
Sbjct: 2   RKKKKSEGNGFNVWR-SYSDMMAGVLLLFVLIMCVTLFQAQK------------------ 42

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                   +  E   +    ++I E  T+  +D +     + +  Q             Q
Sbjct: 43  --------SYNESLQERDEKIAIQEQYTQELLDKQNAIDEKDETLQN------------Q 82

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
            E  K    + +E+ K L       K      N     L ++      ++ ++  +    
Sbjct: 83  DEQLKTQDEKLAEQQKQLEALAAKLKEQESTLNAQQTALDEKTAQLKDQQVQIDQIIGVK 142

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +  +  L  +     +  +       +++     + MFD   +         L++I  + 
Sbjct: 143 ADVIEALKNEFSKNNINVDIDAQTGALTL---EASVMFDYDQAELTDSGKQALEQILPIY 199

Query: 260 ---------AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM--------- 300
                          I I G+TD     +     N +LS  R+ +  Q L+         
Sbjct: 200 CKVLLQDDYKDYLAEIIIDGYTD----TDGDYSYNLQLSQQRSLAVAQYLIDIQGNFLND 255

Query: 301 KSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI 336
           +     ++   ++G   A+  L    +    A+RR+++
Sbjct: 256 EQSQELEKYLTVNGHSMANPVLDADGNVDKDASRRVEV 293


>gi|261401169|ref|ZP_05987294.1| OmpA family protein [Neisseria lactamica ATCC 23970]
 gi|269208842|gb|EEZ75297.1| OmpA family protein [Neisseria lactamica ATCC 23970]
 gi|309379032|emb|CBX22334.1| reduction-modifiable protein of the meningococcus [Neisseria
           lactamica Y92-1009]
          Length = 230

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + LA +    + + GHTD   F    + N  LS  RA  
Sbjct: 94  LFGFDKDSLRAEAQDNLKVLAQRLAQTNVQSVRVEGHTD---FMGSEKYNQALSERRANV 150

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   + +  +G    +
Sbjct: 151 VANYLVSNGVPASK-TSAAGLGESQ 174


>gi|68249712|ref|YP_248824.1| outer membrane protein P5 [Haemophilus influenzae 86-028NP]
 gi|68057911|gb|AAX88164.1| Outer membrane protein P5 [Haemophilus influenzae 86-028NP]
          Length = 359

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  +   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 303 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355


>gi|269962895|ref|ZP_06177235.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832449|gb|EEZ86568.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 301

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S   PE +  L      L      I + GHTD     +++  N  L+  RA 
Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEELAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
           +    L         + ++  F   +  I  +    N+ NRR
Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   SI      V L      +   +  I+I GHTD   F+     N +LS+ RA S  
Sbjct: 62  FDFDKSIIREADAVSLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVE 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             L +    E    ++  F   +      SD   + NRR
Sbjct: 119 AYLQQQLDPEQYDWEVKHFGESQPLALGKSDQARAENRR 157


>gi|126661869|ref|ZP_01732868.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
 gi|126625248|gb|EAZ95937.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
          Length = 295

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
            N   F   S I +PE++ V++++ E ++AH    I I+GH        +  D   ++L 
Sbjct: 186 MNNLYFYDRSGIFVPESLPVMEELLEFMIAHPKVKIEIQGHICCQ----LGEDPEDIALI 241

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRL----KIASDPMNSANRRIDILVED 340
           RA + +  L+ + + + R+     F   +        ++   + NRR++IL+ +
Sbjct: 242 RAIAVHNYLVANDIDDKRLM-YKSFGSTQPLHKIPEKNEKERNENRRVEILILE 294


>gi|323494859|ref|ZP_08099951.1| OmpA family protein [Vibrio brasiliensis LMG 20546]
 gi|323310823|gb|EGA63995.1| OmpA family protein [Vibrio brasiliensis LMG 20546]
          Length = 296

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S    +    + ++   +      ISI GHTD   ++     N +LSL RA +  
Sbjct: 60  FDFDKSELKEQDKQSIDQLMASIGKLHGQISIVGHTD---YQGSDDYNVKLSLRRAEAVK 116

Query: 297 QVLMKSGVSEDRIS-KISGFAHHRLKI--ASDPMNSANRR 333
             +    +   R   ++  +   +  +   S   N+ NRR
Sbjct: 117 AYMQSK-LDASRYDWEVKYYGESKPLVEGVSKQANAENRR 155



 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   +   P     L +    L      + I GHTD   ++     N +L+  RA S  
Sbjct: 189 FDFDKAQLNPADKASLDEFASNLTGLNGRVLIAGHTD---YQGSISYNEKLAQLRAESVM 245

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
           Q L         + ++  F           +  N+ NRR
Sbjct: 246 QYLQTKLDPSQFVWEVKSFGELNPVTQEQDLDANALNRR 284


>gi|319899363|ref|YP_004159460.1| Outer membrane lipoprotein omp16 homolog precursor [Bartonella
           clarridgeiae 73]
 gi|319403331|emb|CBI76890.1| Outer membrane lipoprotein omp16 homolog precursor [Bartonella
           clarridgeiae 73]
          Length = 172

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F  +SS    +   +L +  E L       ++I GH D    R     N  L   R
Sbjct: 62  DRVFFSLNSSSIELDAEYILARQAEWLLRYPHYFVTIEGHADE---RGTREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
           A +    L+  GVS  R+  IS +   R     D ++  + NRR  ++V
Sbjct: 119 AVAVRDHLISLGVSSQRMKTIS-YGKERPVALCDDISCWNQNRRAVLVV 166


>gi|294631150|ref|ZP_06709710.1| secreted protein [Streptomyces sp. e14]
 gi|292834483|gb|EFF92832.1| secreted protein [Streptomyces sp. e14]
          Length = 215

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 19/185 (10%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
                 T+   S   + +   P L   +   +   K L      I S +     +   + 
Sbjct: 40  PSEPPGTEASASAPVQVDPNDPDLKLPEGATLAAPKVLD-----IKSVVEDQGGEERRED 94

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273
              + T           +   +F K S+    +    +  I + +       + + G TD
Sbjct: 95  TNTDVT--------FALQAEVLFPKDSAKLSDQAKSRIDAIAQEIKKQHATQVRVFGFTD 146

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331
                        LS  RA +   VL +     D    + G+A       +   +    N
Sbjct: 147 NLGSHEHGV---VLSKQRANAVQDVLSQELNDPDITFDVRGYAEDYPIADNSTEDGRKKN 203

Query: 332 RRIDI 336
           RR+++
Sbjct: 204 RRVEV 208


>gi|15602451|ref|NP_245523.1| Plp4 [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720855|gb|AAK02670.1| Plp4 [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 272

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD +      +   V+  +   L  S    + + G TD          N +LS  R
Sbjct: 138 GDFLFDFNKDSLTAKGKEVVDSVATQLKASDAKEVKVAGFTDRL---GSEAYNLKLSQRR 194

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I  +      ++K   D   +A       NRR++I
Sbjct: 195 ADRVKARLIEQGVAAN-IHAVGYGKAQQVKACDDVQGAALRDCLRPNRRVEI 245


>gi|333030282|ref|ZP_08458343.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011]
 gi|332740879|gb|EGJ71361.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011]
          Length = 227

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +SS   P +   L +  ++L       I++ G TD          N  +S  RA S
Sbjct: 113 LFDFNSSTLSPASRSSLSQFADILRQDPTIDIAVFGKTDKV---GTYDANMTVSNRRAQS 169

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L   GV++ +   + G  + +   A  P  + NR +DI
Sbjct: 170 VKSFLQSQGVNDYQFKSVQGVGYTQYDEALLP--AQNRVVDI 209


>gi|194366090|ref|YP_002028700.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348894|gb|ACF52017.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 278

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F   S++   E    +Q  + +V  A   + I + G+TD     + +  N  LS  RA 
Sbjct: 165 LFGFDSAVLSAEGQQAVQGVLAQVREASQVQSIRVTGYTD--RIGSASY-NQALSQRRAE 221

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           +    L++ GV    IS   G       +  +  N          NRR+ I
Sbjct: 222 AVRSALVQGGVPAASISA-EGRGAAEPIVQCEQRNRRELIACLAPNRRVQI 271


>gi|119775220|ref|YP_927960.1| peptidoglycan-associated lipoprotein [Shewanella amazonensis SB2B]
 gi|119767720|gb|ABM00291.1| peptidoglycan-associated lipoprotein [Shewanella amazonensis SB2B]
          Length = 178

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +G V+  +         +  +      + N   FD   S   P +  +L   G  L  + 
Sbjct: 50  TGSVSGMLTPEEQMRMKQEELR-----RENVIYFDFDRSEVSPLSADILLAHGNYLLENP 104

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-- 320
              I I GH+D    R     N  L   RA +  + L   GV   ++S +S +   +   
Sbjct: 105 SVRILIEGHSDE---RGTPEYNIALGERRAKAVAKYLQAMGVQPAQMSIVS-YGEEKPQD 160

Query: 321 KIASDPMNSANRR 333
              +D   S NRR
Sbjct: 161 LTRTDEGFSKNRR 173


>gi|313667783|ref|YP_004048067.1| outer membrane protein class 4 (RmpM) [Neisseria lactamica ST-640]
 gi|313005245|emb|CBN86678.1| outer membrane protein class 4 (RmpM) [Neisseria lactamica 020-06]
          Length = 230

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + LA +    + + GHTD   F    + N  LS  RA  
Sbjct: 94  LFGFDKDSLRAEAQDNLKVLAQRLAQTNVQSVRVEGHTD---FMGSEKYNQALSERRANV 150

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   + +  +G    +
Sbjct: 151 VANYLVSNGVPASK-TSAAGLGESQ 174


>gi|260779320|ref|ZP_05888212.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605484|gb|EEX31779.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 303

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD        +    L  +   L        + I G+TD          N  +S  RA  
Sbjct: 181 FDLGQRHLTVQQTNTLGALYTYLRADKNISKVLIDGYTDNV---GSNVANLTISKQRADL 237

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343
             + L KSGV   RI  +          ++      + NRR+ + LV + + 
Sbjct: 238 VAKALKKSGVEAARIE-VRSHGSRYPIASNSTPEGQAKNRRVTLRLVRNDEA 288


>gi|260428791|ref|ZP_05782768.1| OmpA domain protein [Citreicella sp. SE45]
 gi|260419414|gb|EEX12667.1| OmpA domain protein [Citreicella sp. SE45]
          Length = 174

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291
           +   F    S   P+    L    + L  +++ ++ I GH D          N  L   R
Sbjct: 64  DRVFFAVDQSTLSPQAQATLDAQAQWLMTNSDYLAVIEGHADEQ---GTREYNIALGARR 120

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR-IDIL 337
           A +  + L+  G++ +R+  IS G        A +   S NRR + ++
Sbjct: 121 ANATMEYLVSKGIASNRLRFISYGKERPVEVCAEEACYSKNRRAVTVI 168


>gi|149188836|ref|ZP_01867126.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1]
 gi|148837256|gb|EDL54203.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1]
          Length = 221

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
           E T  G L++         F        P     L  + + LA +   +++ GHTD   +
Sbjct: 100 EPTDKGYLVA------RVHFAFDKYNLTPLAHKTLTGVAKQLAANNFEVTVEGHTD---W 150

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
                 N  L + RA +    L  +GV ++  +  + F       ++   +    NRR D
Sbjct: 151 VGSDEYNQALGMRRATATANELASNGVRKENTTLKT-FGESEPLASNKTADGRSQNRRSD 209

Query: 336 ILV 338
           + +
Sbjct: 210 VYI 212


>gi|27366370|ref|NP_761898.1| sodium-type flagellar protein motY [Vibrio vulnificus CMCP6]
 gi|27362571|gb|AAO11425.1| Sodium-type flagellar protein motY precursor [Vibrio vulnificus
           CMCP6]
          Length = 293

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++++       +   L +I E + +++++  + +  +TD++   +++++   LS  RA S
Sbjct: 187 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G++EDRI ++ G+   R    +        NRR+ I +
Sbjct: 244 LRDYFKALGLTEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 288


>gi|585614|sp|P38368|OMP52_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; Flags:
           Precursor
 gi|388301|gb|AAA03346.1| outer membrane protein P5 [Haemophilus influenzae]
 gi|301169904|emb|CBW29508.1| outer membrane protein A (3a;II*;G;d) [Haemophilus influenzae
           10810]
          Length = 353

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 349


>gi|160894083|ref|ZP_02074861.1| hypothetical protein CLOL250_01637 [Clostridium sp. L2-50]
 gi|156864116|gb|EDO57547.1| hypothetical protein CLOL250_01637 [Clostridium sp. L2-50]
          Length = 251

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 26/201 (12%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           L +S    +S   E +     + +++ L   +++ L  +A   S  ++ L  +     + 
Sbjct: 38  LMQSKSQYESKQAELDKQKEIIKEQEQLLKDQQEELDRIAGIRSDLVAALRDEFADSSLN 97

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI----GEVL-----AHSTEVIS 267
            +       I+      + +FD + S    E    L++      +VL           I 
Sbjct: 98  VKVDEKTGAITF---DASVLFDVADSDLKEEGKTFLKEFLPKYCKVLLDEKYRDYVSEII 154

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSED-------RISKISGFAHH 318
           I GHTD +        N  LS  RA+S  +      +G+           +   +G ++ 
Sbjct: 155 IEGHTDTN---GSYIYNLELSQHRAFSVAKYCLTESNGIISSTDVELLRSVLTANGKSYS 211

Query: 319 RLKIASDPM--NSANRRIDIL 337
                 D      A+RR++IL
Sbjct: 212 NPIYKEDGAVDLEASRRVEIL 232


>gi|153831565|ref|ZP_01984232.1| OmpA family protein [Vibrio harveyi HY01]
 gi|148872075|gb|EDL70892.1| OmpA family protein [Vibrio harveyi HY01]
          Length = 297

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS- 310
           L      +   +  I+I GHTD   ++     N  LSL RA S    L K  +  D    
Sbjct: 77  LNAFVHEIEGLSGRITIVGHTD---YKGSLEYNEALSLRRAQSVESFL-KEKLDPDHYDW 132

Query: 311 KISGFAHHRLKI--ASDPMNSANRR 333
           ++  F   +      +D   + NRR
Sbjct: 133 EVKYFGETQPLALGKTDEDRAENRR 157



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S   PE +  L    + L      I + GHTD     +++  N +L+  RA 
Sbjct: 188 TPHFDFDKSQLKPEDLAKLDSFTDKLQGLQGSILVAGHTD--QIGSLSY-NEKLAQRRAS 244

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKI--ASDPMNSANRR 333
              + L K+ +   +   ++  F   +  I   S   N+ NRR
Sbjct: 245 EVVKYL-KTKIDPSQFLWEVKSFGELQPAIDERSKEANALNRR 286


>gi|145637084|ref|ZP_01792747.1| Outer membrane protein P5 [Haemophilus influenzae PittHH]
 gi|145269738|gb|EDK09678.1| Outer membrane protein P5 [Haemophilus influenzae PittHH]
          Length = 358

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354


>gi|295395643|ref|ZP_06805835.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971459|gb|EFG47342.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 563

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +FD   S    +   VL  + + L    + + + + GHTDA   +     N +LS DRA 
Sbjct: 275 LFDFDKSEINDKGHKVLGNVAKTLNQQAAGQTVKVVGHTDA---KGDENYNKKLSEDRAK 331

Query: 294 SAYQVLMKSGVSEDRISKI----SGFAHHRLKIAS--------DPMNSANRRID 335
           +  + L        +++ +     G    +    +        +   + NRR+ 
Sbjct: 332 AVQKELQ------PQLNNVKLETEGRGETQPIAKNFDDKGNDLEANQAKNRRVS 379


>gi|108755187|emb|CAK32579.1| outer membrane protein [uncultured organism]
          Length = 178

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+             L+K    L       I++ GH D    R     N  L   R
Sbjct: 68  DRIFFEFDKYNLKAGARGTLEKQAAWLKKWPAVTITVEGHCDE---RGTREYNLALGERR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
           A S    L+  GV+  RI  IS      + + S+    + NRR
Sbjct: 125 ANSVKDYLVALGVNPSRIKTISYGKERPVALGSNESAWAQNRR 167


>gi|264677754|ref|YP_003277660.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|299529322|ref|ZP_07042761.1| OmpA/MotB [Comamonas testosteroni S44]
 gi|262208266|gb|ACY32364.1| OmpA/MotB [Comamonas testosteroni CNB-2]
 gi|298722700|gb|EFI63618.1| OmpA/MotB [Comamonas testosteroni S44]
          Length = 175

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +    ++   + +  +    + + GHTD    R     N  L   RA + 
Sbjct: 74  FDFDSYSVKADAQPQIEAHAKFIKANPAAKVQLEGHTDE---RGGREYNLALGQKRAEAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV++ ++  +S +   +      S+   + NRR++I
Sbjct: 131 RRSLGLLGVNDAQVEAVS-YGKEKPAAEGHSEDAYAQNRRVEI 172


>gi|268590120|ref|ZP_06124341.1| outer membrane protein P5 [Providencia rettgeri DSM 1131]
 gi|291314389|gb|EFE54842.1| outer membrane protein P5 [Providencia rettgeri DSM 1131]
          Length = 363

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + +   PE    L ++   L+        + + G TD          N  LS
Sbjct: 235 RSDVLFNFNKASLKPEGQQALNELYNELSSIDPTQGRVLVVGFTDRI---GSQNYNLPLS 291

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA S    L+  GV    I+   G         +   N           + +RR++I 
Sbjct: 292 QKRAQSVVDYLVSKGVPASAIAA-EGRGKEDPVTGNKCDNVKGRAALIECLAPDRRVEIE 350

Query: 338 VE 339
           ++
Sbjct: 351 IQ 352


>gi|153876506|ref|ZP_02003792.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152067030|gb|EDN66208.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 240

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 37/203 (18%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D+++S N+ E+         ++    R +  Q+L ++  S L    AD +    +   + 
Sbjct: 34  DVQRSKNQIEHQKNAMAEIVEVAEHSRLRLHQELLQEFISDLKRWNADILEDNTVRFNSP 93

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVI---SIRGHTD- 273
                         +F +  S+  P+   +L         +L H  E I    I GHT  
Sbjct: 94  Q------------VLFHQGKSMLQPQFKNILDSFFPRYLAILLHYQEDIEAIRIEGHTSS 141

Query: 274 ----ASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED------RISKISGFAHHRLKI 322
               A        +N  LS  RA +  +   + + + E+      ++ + +G +  +   
Sbjct: 142 DWLNADDIATRYLNNVELSQQRALATLEYCYLLASLDENLRKWLPQVLRANGLSFAKPIF 201

Query: 323 ASDPMNSAN----RRIDILVEDR 341
            +D   S N    RR++  V  +
Sbjct: 202 NAD--GSENAEQSRRVEFKVVTK 222


>gi|144898283|emb|CAM75147.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Magnetospirillum gryphiswaldense MSR-1]
          Length = 157

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +       +V+  +  V  ++    +++ G TD          N  LS  RA   
Sbjct: 52  FDTNKTDIDSRGRMVVNSVAHVATNNGLTRVTVIGKTDRV---GSTAGNVALSQRRADQV 108

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338
              L+ +GV  DRI +  +G A   +  A+D     NR +D+ V
Sbjct: 109 RDALIAAGVPADRIDTSWTGEARQAVSTANDAEEQRNRVVDVTV 152


>gi|330953391|gb|EGH53651.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 447

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L         +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|193076753|gb|ABO11465.2| putative antigen [Acinetobacter baumannii ATCC 17978]
          Length = 259

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283
           I D+  + +F  D+  +  + E    + KI E +  S     I + G TD  P    +  
Sbjct: 141 IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 197

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPM-----NSANRRID 335
           N  LS  RA +  ++L++ GV   RI +I   +   +     +++        + NRR++
Sbjct: 198 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSSNNSSQLIQCLAPNRRVN 256

Query: 336 I 336
           I
Sbjct: 257 I 257


>gi|83815059|ref|YP_446342.1| OmpA domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83756453|gb|ABC44566.1| OmpA domain protein, putative [Salinibacter ruber DSM 13855]
          Length = 208

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEV-ISIRGHTDASPF----RNIARDNWRLSLD 290
           F   S+         L +    +          I+G+TD  P     ++    NW LS  
Sbjct: 95  FPSGSAWIPDRGRRRLDEHAATIKDEYPNAGFRIQGYTDPVPIGPSLQDTYPSNWYLSAQ 154

Query: 291 RAYSAYQVL 299
           RA +    L
Sbjct: 155 RAAAVAHYL 163


>gi|329943316|ref|ZP_08292090.1| ompA family protein [Chlamydophila psittaci Cal10]
 gi|332287892|ref|YP_004422793.1| putative peptidoglycan-associated protein [Chlamydophila psittaci
           6BC]
 gi|313848464|emb|CBY17468.1| putative peptidoglycan-associated protein (periplasmic)
           [Chlamydophila psittaci RD1]
 gi|325507092|gb|ADZ18730.1| putative peptidoglycan-associated protein [Chlamydophila psittaci
           6BC]
 gi|328814863|gb|EGF84853.1| ompA family protein [Chlamydophila psittaci Cal10]
 gi|328915156|gb|AEB55989.1| outer membrane protein, OmpA family [Chlamydophila psittaci 6BC]
          Length = 191

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  S ++ + I GHTD    R  A  N  L   RA +
Sbjct: 87  FATDSYTIKGEENLAILSSLVRQMQKSPKMTLYIEGHTDE---RGAASYNLALGARRANA 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
             Q L+K G+S DR+  +S      + +  + +    NRR +  +  R
Sbjct: 144 VKQHLIKQGISADRLFTVSYGKEQPINLGHNELAWQQNRRTEFKIHAR 191


>gi|257487833|ref|ZP_05641874.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331008545|gb|EGH88601.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 447

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|189500639|ref|YP_001960109.1| peptidoglycan-associated lipoprotein [Chlorobium phaeobacteroides
           BS1]
 gi|189496080|gb|ACE04628.1| peptidoglycan-associated lipoprotein [Chlorobium phaeobacteroides
           BS1]
          Length = 158

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F   S+   P  +  L+   E L    T    I GH D    R  +  N  L   R
Sbjct: 53  KDVFFQYDSAELEPVAVSQLKNNAEWLNQNRTISAMIEGHCDE---RGTSEYNMALGEKR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
           A +    L+++GV+  R+  +S F   R   +     +   NRR
Sbjct: 110 AETTKSFLVRAGVAASRLETVS-FGEERPFDSGHTEAAWSKNRR 152


>gi|87198413|ref|YP_495670.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
 gi|87134094|gb|ABD24836.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
          Length = 174

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S          L +    LA    V ++I GH D    R     N  L   R
Sbjct: 68  DRVFFDFDSYGLDDTDRATLTRQASWLAQYPNVNVTIEGHADE---RGTRDYNLALGERR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
           A +A   L   GV+  R+S +S        + SD  + + NRR + +++
Sbjct: 125 ANAAKNFLASLGVATTRMSVVSYGKERPEALGSDEQSWAQNRRAVTMVI 173


>gi|71083303|ref|YP_266022.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062416|gb|AAZ21419.1| OmpA family [Candidatus Pelagibacter ubique HTCC1062]
          Length = 159

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            +   F  + ++    +   L+K    L  +++  + + GH D    R     N  L   
Sbjct: 52  PDRVFFATNETVLTTASRETLRKQAAWLRKNSDINVVLEGHADE---RGTREYNLALGER 108

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
           RA SA   LM  G+S +RIS +S      +   S+P+  S NRR
Sbjct: 109 RANSAKDYLMTYGISSERISVLSYGKERPVDSGSNPLAWSKNRR 152


>gi|297748730|gb|ADI51276.1| Peptidoglycan-associated lipoprotein [Chlamydia trachomatis D-EC]
 gi|297749610|gb|ADI52288.1| Peptidoglycan-associated lipoprotein [Chlamydia trachomatis D-LC]
          Length = 202

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   L  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 98  FATDSYSIKGEDNLTILASLVRHLHKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 154

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
             Q L+K G++ DR+  IS G  H      ++     NRR +  +  R
Sbjct: 155 VKQYLIKQGIAADRLFTISYGKEHPVHPGHNELAWQQNRRTEFKIHAR 202


>gi|15605330|ref|NP_220116.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789338|ref|YP_328424.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           A/HAR-13]
 gi|166154814|ref|YP_001654932.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 434/Bu]
 gi|166155689|ref|YP_001653944.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237803028|ref|YP_002888222.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804949|ref|YP_002889103.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311421|ref|ZP_05353991.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 6276]
 gi|255317722|ref|ZP_05358968.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 6276s]
 gi|255348981|ref|ZP_05380988.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 70]
 gi|255503520|ref|ZP_05381910.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 70s]
 gi|255507198|ref|ZP_05382837.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           D(s)2923]
 gi|301336092|ref|ZP_07224336.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis L2tet1]
 gi|3329044|gb|AAC68202.1| Peptidoglycan-Associated Lipoprotein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167868|gb|AAX50876.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           A/HAR-13]
 gi|165930802|emb|CAP04300.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 434/Bu]
 gi|165931677|emb|CAP07254.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273249|emb|CAX10164.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274262|emb|CAX11057.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525642|emb|CBJ15123.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           Sweden2]
 gi|296435206|gb|ADH17384.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis E/150]
 gi|296436135|gb|ADH18309.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/9768]
 gi|296437063|gb|ADH19233.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           G/11222]
 gi|296437995|gb|ADH20156.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           G/11074]
 gi|296438925|gb|ADH21078.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis
           E/11023]
 gi|297140497|gb|ADH97255.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/9301]
          Length = 188

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   L  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 84  FATDSYSIKGEDNLTILASLVRHLHKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 140

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341
             Q L+K G++ DR+  IS G  H      ++     NRR +  +  R
Sbjct: 141 VKQYLIKQGIAADRLFTISYGKEHPVHPGHNELAWQQNRRTEFKIHAR 188


>gi|15835503|ref|NP_297262.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
 gi|7190917|gb|AAF39684.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
          Length = 202

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   L  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 98  FATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 154

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
             Q L+K G++ DR+  IS    H +    + +    NRR +  +  R
Sbjct: 155 VKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 202


>gi|49083180|gb|AAT50966.1| PA1048 [synthetic construct]
          Length = 294

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +P T   L K+ ++        I + GHTD++        N +LS +RA S   +   S
Sbjct: 187 LMPITRNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           G+  D++ ++ G      +   AS    + NRR+++L   R
Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283


>gi|329755860|gb|AEC04327.1| outer membrane protein A [Pasteurella multocida]
 gi|329755868|gb|AEC04331.1| outer membrane protein A [Pasteurella multocida]
 gi|329755870|gb|AEC04332.1| outer membrane protein A [Pasteurella multocida]
 gi|329755872|gb|AEC04333.1| outer membrane protein A [Pasteurella multocida]
          Length = 348

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348


>gi|329755856|gb|AEC04325.1| outer membrane protein A [Pasteurella multocida]
          Length = 354

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 241 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 298 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 354


>gi|329755848|gb|AEC04321.1| outer membrane protein A [Pasteurella multocida]
          Length = 358

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358


>gi|329755832|gb|AEC04313.1| outer membrane protein A [Pasteurella multocida]
 gi|329755834|gb|AEC04314.1| outer membrane protein A [Pasteurella multocida]
 gi|329755836|gb|AEC04315.1| outer membrane protein A [Pasteurella multocida]
 gi|329755838|gb|AEC04316.1| outer membrane protein A [Pasteurella multocida]
 gi|329755844|gb|AEC04319.1| outer membrane protein A [Pasteurella multocida]
 gi|329755850|gb|AEC04322.1| outer membrane protein A [Pasteurella multocida]
          Length = 358

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358


>gi|329755830|gb|AEC04312.1| outer membrane protein A [Pasteurella multocida]
          Length = 358

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358


>gi|289661910|ref|ZP_06483491.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667001|ref|ZP_06488076.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 172

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+TD    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNTDE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTESGESCWSQNRRVEIV 168


>gi|260767963|ref|ZP_05876897.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           furnissii CIP 102972]
 gi|260615993|gb|EEX41178.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           furnissii CIP 102972]
          Length = 227

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 226 ISIIDQRNTPM-FDKS----SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
           I+  + R+T + F       S+        ++  +          + I GHTD    R  
Sbjct: 93  ITFTEARDTSLYFASGQQSLSAAQQRTLRDLISYVA--RDKRVTHLLIDGHTDNVGSRLA 150

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
              N  +S  RA     VL   GV+ D+I +I            A++   + NRR+ I
Sbjct: 151 ---NLSVSRSRAEQVAAVLETLGVAADKI-QIRAHGSRYPVASNATESGRAQNRRVVI 204


>gi|222111846|ref|YP_002554110.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|221731290|gb|ACM34110.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 233

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 19/206 (9%)

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
             + SL       +    +   +   +      +P  ++ ++ A      L   A+    
Sbjct: 32  RSRQSLAATPTHLQPADAAPLTQLQPHVTHGGLVPRETETRLQAAAGPATLLRAAEVPPQ 91

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            L    A  ++  +  + T     ISI D     +FD   +    +    L K  E+L  
Sbjct: 92  RLEQTHA--LLVELQAQPTPEQ-AISI-DLPADVLFDFDKAELRADAARSLDKAAELLKS 147

Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
             +  I + GHTD    +     N  LS  RA +    L        R     G    + 
Sbjct: 148 YPQAPIDVVGHTDG---KGGDTYNDALSQRRAAAVAAALQS---RTGRPIATRGMGKRQP 201

Query: 321 KIAS-------DP-MNSANRRIDILV 338
              +       DP     NRR+ I++
Sbjct: 202 VAPNTTPDGRDDPDGRQRNRRVQIVI 227


>gi|62548381|gb|AAX86828.1| outer membrane protein [Pasteurella multocida]
          Length = 358

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358


>gi|49182350|gb|AAT57677.1| OmpA [Pasteurella multocida]
          Length = 351

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 238 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 294

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 295 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 351


>gi|49182356|gb|AAT57680.1| OmpA [Pasteurella multocida]
          Length = 353

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 353


>gi|58422905|gb|AAW73252.1| OmpA [Salmonella sp. CDC 156-87]
          Length = 226

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 118 KSDVLFNFNKSTLKPEGQQALDQLYNQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 174

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             RA S    L+  G+  D+IS   G         +
Sbjct: 175 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGN 209


>gi|77464239|ref|YP_353743.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126463081|ref|YP_001044195.1| OmpA domain-containing protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221640123|ref|YP_002526385.1| OmpA domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|332559128|ref|ZP_08413450.1| OmpA domain protein precursor [Rhodobacter sphaeroides WS8N]
 gi|77388657|gb|ABA79842.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1]
 gi|126104745|gb|ABN77423.1| OmpA domain protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221160904|gb|ACM01884.1| OmpA domain protein precursor [Rhodobacter sphaeroides KD131]
 gi|332276840|gb|EGJ22155.1| OmpA domain protein precursor [Rhodobacter sphaeroides WS8N]
          Length = 182

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F    S         L    + L +++   I I GH D          N  L   R
Sbjct: 72  DRVFFTVDQSTLNDAARATLDTQSQWLMSNADYAIIIEGHADEQ---GTREYNLALGARR 128

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A +    L+  G++  R+  +S G        +++   S NRR
Sbjct: 129 ASAVQDYLISKGIAPSRMKTVSYGKERPVEVCSTEACYSKNRR 171


>gi|15602651|ref|NP_245723.1| hypothetical protein PM0786 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721089|gb|AAK02870.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 353

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 353


>gi|332288152|ref|YP_004419004.1| outer membrane protein A [Gallibacterium anatis UMN179]
 gi|330431048|gb|AEC16107.1| outer membrane protein A [Gallibacterium anatis UMN179]
          Length = 361

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    +   PE    L  + + +        + + G+TD     +    N +LS +RA 
Sbjct: 240 LFAFGKANLKPEAAQSLDNLQQEITKVGSLSSVEVAGYTD--RIGSDKY-NQKLSQERAN 296

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDRQ 342
           +    L+   +S D I  + G+        +  D +            +RR+++ V  +Q
Sbjct: 297 TVANYLVSKSISPDVIKAV-GYGEANPVTGNTCDAVKGRKALIACLAPDRRVEVSVSGQQ 355


>gi|255014570|ref|ZP_05286696.1| hypothetical protein B2_11729 [Bacteroides sp. 2_1_7]
 gi|293373684|ref|ZP_06620031.1| chemotaxis protein MotB family protein [Bacteroides ovatus SD CMC
           3f]
 gi|292631339|gb|EFF49970.1| chemotaxis protein MotB family protein [Bacteroides ovatus SD CMC
           3f]
          Length = 231

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K +     ++      + DL  S+       L     +     ++ + +     +I + L
Sbjct: 4   KRTEYESKDENAFALSTGDLMASLLFIFILLLMGALLQVQEKAEQDEEIVKRYDQIKTQL 63

Query: 204 SGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE---- 257
              +       +     T  + + I    Q  + +FD+  S+  P+   +L         
Sbjct: 64  YIDLQQEFKDDLAVWRATIDSTLCIRF--QEPSMLFDEGQSLLKPKFKNILDDFFPRYIA 121

Query: 258 VLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV---LMKSGVSE--D 307
           VL+          I I GHT+++        N  LS DR  +  Q    LM   + E   
Sbjct: 122 VLSRDEYRDNIEEIRIEGHTNSN---GGYYSNMELSQDRTRAVLQYCFSLMSDDLEEWLK 178

Query: 308 RISKISGFAHHRLKIASDPMNSAN--RRIDILVED 340
            +   +G +   L +  +     +  RR++  V  
Sbjct: 179 GLVTANGLSSSHLILKMNGEEDKDLSRRVEFRVRT 213


>gi|332664693|ref|YP_004447481.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333507|gb|AEE50608.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 662

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           +I   +   +      +L + T  + +  HTD+   R     N +LS+ RA +A + L++
Sbjct: 547 AIRTTDARDLEALTRLMLKYPTMEVELGAHTDS---RGTTEYNQQLSVRRAEAAKEFLVR 603

Query: 302 SGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339
            GV+ +RI + +GF   +++         ++  +  NRR ++ V 
Sbjct: 604 KGVAANRI-RTTGFGETQIRNHCKEGIECAEKEHQFNRRTEVKVL 647


>gi|261251019|ref|ZP_05943593.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
 gi|260937892|gb|EEX93880.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891]
          Length = 305

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 14/141 (9%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255
            + I      LV   +++  +       I I++        FD   S    +    + ++
Sbjct: 28  KENIDKFGDPLVEKFLIRECIVP--ERDIRIAMASH-----FDFDKSELKEQDKQSIDRL 80

Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISG 314
              +      I+I GHTD   ++     N +LSL RA +    +    +   R   ++  
Sbjct: 81  ISSIRKLHGQIAIVGHTD---YQGSDDYNVKLSLRRAEAVKAYMQTQ-LDASRYDWEVKY 136

Query: 315 FAHHRLKI--ASDPMNSANRR 333
           +   +  +   S   N+ NRR
Sbjct: 137 YGESKPLVEGQSKQANAENRR 157



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +   P     L +    L      + I GHTD   ++     N RL+  RA S  
Sbjct: 191 FGFDEAKLKPIDKTSLDEFANQLNGLNGRVLIAGHTD---YQGSISYNERLAEQRAESVL 247

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
           Q L         + ++  F           +  N+ NRR
Sbjct: 248 QYLQTKLDPNQFVWEVKSFGELNPVTQEQDLDANALNRR 286


>gi|259415649|ref|ZP_05739570.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259348879|gb|EEW60641.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 136

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    S         LQ+        T    + GHTD+   R     N  LS  RA + 
Sbjct: 35  FFATDGSTVNAAGRKRLQEWFRNAMPGTRSFVVAGHTDS---RASDEYNMALSQRRADAV 91

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            Q+    G    RI  +  +     ++ +      + NRR++I
Sbjct: 92  AQIGRSVG---ARIKDVRAYGERSPRVPNRGAANLAQNRRVEI 131


>gi|187924986|ref|YP_001896628.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187716180|gb|ACD17404.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 215

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPAGKEKLDDLASKIGALNLEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|103487471|ref|YP_617032.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98977548|gb|ABF53699.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 373

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S   PE    L           +   I + GH D       AR N  LS  R  +
Sbjct: 266 FDWDQSNITPEAASTLDNAISAYNRGCTGTQIMLAGHADR---SGSARYNVGLSERRNDA 322

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
               L   G+S+  IS    F   R  +A+     N  NRR++I
Sbjct: 323 VRSYLTARGISDGSISA-QAFGETRPAVATADGVRNDQNRRVEI 365


>gi|325102935|ref|YP_004272589.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
 gi|324971783|gb|ADY50767.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145]
          Length = 668

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           + KS   EKS+  +E+       +++   + R    + L K+     +  + ++ +  V 
Sbjct: 467 VNKSKGEEKSVLSKEDGTFSFDLEKETDYVLRGDSDKFLLKQEGQLSTKGIKESTIFNVR 526

Query: 217 FETT--RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           FE        L+ +    N   +D        +    L K+   +     V I +R HTD
Sbjct: 527 FEVEKAEDAYLVKL----NNIYYDFDKYTIRKDAEPELNKVLAFMKKMPYVNIELRAHTD 582

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326
           +   R  A  N  LS +RA SA   L+  G    R+    GF   +L          +  
Sbjct: 583 S---RGKASYNMLLSENRANSAKLFLLNGGADGSRLLA-KGFGETQLLNHCKDGVKCTKE 638

Query: 327 MNSANRRIDILV 338
            +  NRR +  V
Sbjct: 639 EHQLNRRTEFKV 650


>gi|289625126|ref|ZP_06458080.1| OmpA family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648705|ref|ZP_06480048.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867997|gb|EGH02706.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 447

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|73667180|ref|YP_303196.1| OmpA/MotB domain-containing protein [Ehrlichia canis str. Jake]
 gi|72394321|gb|AAZ68598.1| OmpA/MotB domain [Ehrlichia canis str. Jake]
          Length = 162

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +        +L+K+ +     T   I I GHTD    R     N  L   RA + 
Sbjct: 46  FDFGKATIGDSDKAILEKVIQKAQKDTNTNIVIVGHTDT---RGTDEYNLELGEQRANAV 102

Query: 296 YQVLMKSGVS-EDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340
              +++   S E+RI+ +  G +   + + +S+P  +      NRR+ I + D
Sbjct: 103 KDFIIEHDKSLENRITVQSKGKSEPAVLVYSSNPEEAEHAHAKNRRVVITLTD 155


>gi|170698906|ref|ZP_02889966.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170136159|gb|EDT04427.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 85

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +   L+      + I GHTD S  R        LS  RA +    L+   +   +++  +
Sbjct: 1   MAAALSKLQNRTVDIIGHTDNSGNRTSHI---ALSQARADAVKGYLITKSIPPQQMT-TT 56

Query: 314 GFAHHRLKIASDP--MNSANRRID 335
           G    +    +D     + NRRID
Sbjct: 57  GVGPDQPIAPNDTADGRARNRRID 80


>gi|332704881|ref|ZP_08424969.1| peptidoglycan-associated lipoprotein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332555030|gb|EGJ52074.1| peptidoglycan-associated lipoprotein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 198

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 36/204 (17%)

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           +  Q S     +      +  D   + D       EE  +     ++       ++RLQ 
Sbjct: 24  AKKQVSSTPDQTSAAAQGEMTDGTPTDDEAARRAAEEEAYRRSELQDDQTGQTEQERLQA 83

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
             ++    ++ LV                             F   S     +   VLQ+
Sbjct: 84  -EQQAKQNINELV----------------------------FFAYDSYELDSKAREVLQR 114

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             + L    +  ++I+G  D    R     N  L   RA +++  L+  GV+ +RI+ +S
Sbjct: 115 KAQALKLMPDTRVTIKGFCDE---RGTEEYNLALGERRARASFDFLVLMGVNPNRINIVS 171

Query: 314 GFAHHRLKIASDPMN--SANRRID 335
            +        ++     + NRR +
Sbjct: 172 -YGEDNPLDPANSEAAYAKNRRCE 194


>gi|53804447|ref|YP_113694.1| OmpA family protein [Methylococcus capsulatus str. Bath]
 gi|53758208|gb|AAU92499.1| OmpA family protein [Methylococcus capsulatus str. Bath]
          Length = 215

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS  LPE + ++      LA    V +++ GH D    R     N  L   RA S 
Sbjct: 112 FGYDSSEVLPEYVPIVNAHAAYLASHPNVTVTLEGHCDE---RGSPEYNIALGEQRARSI 168

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
              +   G S+ ++ +I  F   +         +   NRR++I+
Sbjct: 169 ANTMRFQGASDGQM-QIVSFGEEKPADPGSGEAAWAKNRRVEIV 211


>gi|86153447|ref|ZP_01071651.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843173|gb|EAQ60384.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 317

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 54/322 (16%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++ + +    + N        Q S+   ++L 
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN------YKQLSKDLNSTLD 115

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                     K   +     ++++  L  L ++   A ++ + L  + + +S  L   + 
Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGFIRENLSKELQSKLD 168

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257
           +NI    + E T +   IS+       +FDK S +   E    L+KI            +
Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315
           + ++    I I GHTD+         N  LS  RAY     +     S    ++   SG 
Sbjct: 220 IFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSNKLQKLLMASGR 275

Query: 316 AHHRLKIASDPMN-SANRRIDI 336
           +       +   +   +RRI+I
Sbjct: 276 SFSDPVFVNGVEDKDKSRRIEI 297


>gi|270285686|ref|ZP_06195080.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Nigg]
 gi|270289694|ref|ZP_06195996.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum
           Weiss]
 gi|301337081|ref|ZP_07225283.1| peptidoglycan-associated lipoprotein [Chlamydia muridarum
           MopnTet14]
          Length = 188

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   L  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 84  FATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 140

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
             Q L+K G++ DR+  IS    H +    + +    NRR +  +  R
Sbjct: 141 VKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 188


>gi|315638943|ref|ZP_07894114.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21]
 gi|315480972|gb|EFU71605.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21]
          Length = 244

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 4/186 (2%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F     + 
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISETNPAKVEALKTEFVKI-FDY 58

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T      + QN  + +  ++      E + + ++  +      K    + EN I     
Sbjct: 59  TTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQETIRKLKAALDQSENQIALNLP 118

Query: 137 SQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           S+  E  KNS    S   +D L +   L  S+  +    +   +     A++  +   + 
Sbjct: 119 SR-VEFAKNSAEIVSADVQDYLKRMAQLSLSLPPQAKIEIRGFTDNSDSALRSFELGYER 177

Query: 196 AKKISS 201
           AK + +
Sbjct: 178 AKAVMN 183



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 30/208 (14%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKR 191
            +N  + E  K    +  +        T+ + +         P    E  K L + +++ 
Sbjct: 39  ETNPAKVEALKTEFVKIFDYTTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQET 98

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIV 250
           ++ L   +  +    +A N+   V                     F K+S+     +   
Sbjct: 99  IRKLKAALDQS-ENQIALNLPSRVE--------------------FAKNSAEIVSADVQD 137

Query: 251 VLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
            L+++ ++         I IRG TD     + A  ++ L  +RA +     +  GVS  +
Sbjct: 138 YLKRMAQLSLSLPPQAKIEIRGFTDN---SDSALRSFELGYERAKAVMNYFIDGGVSVGK 194

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  I  +  +   +   P + AN R++I
Sbjct: 195 L-SIKSYGFNEPLLNHAPSDLANNRVEI 221


>gi|298487201|ref|ZP_07005250.1| Phosphate-binding protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158225|gb|EFH99296.1| Phosphate-binding protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 408

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 307 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 361

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 362 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 408


>gi|312962647|ref|ZP_07777136.1| hypothetical protein PFWH6_4568 [Pseudomonas fluorescens WH6]
 gi|311283022|gb|EFQ61614.1| hypothetical protein PFWH6_4568 [Pseudomonas fluorescens WH6]
          Length = 437

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 235 PMFDKSSSIPLP-------ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
            +F+ + + P         E    L+   +    S    SI G+ D  P +     N  L
Sbjct: 311 SLFESNGAEPTALGKRKINEFRRQLRAFAKTSGLSVVEASITGYADRQPLKAKGDTNLEL 370

Query: 288 SLDRAYSAYQVLMKSGVS---EDRISKISGFAHHRL-----KIASDPMN--SANRRIDIL 337
           S  RA S  Q L    V    +++     G A  R         +D  +  S++RR++++
Sbjct: 371 SRRRALSVSQYLGSILVPLSEDNKSIVGRGVAQTRAECPAGLAPADMSSCLSSDRRVEVV 430

Query: 338 VE 339
           VE
Sbjct: 431 VE 432


>gi|295691255|ref|YP_003594948.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295433158|gb|ADG12330.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 406

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S+  PE   V+ +  +         I + GHTD        + N +LS  RA + 
Sbjct: 304 FPFDQSVLTPEAQSVVTEAAKYSNDGKATKIIVVGHTDT---SGSPKYNVKLSERRAKAV 360

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
              L+  GVS+D +  +         +A+        NRR  I +
Sbjct: 361 ADALVSQGVSKD-VLGVDWKGESAPAVATGDGVKEPLNRRSTISI 404


>gi|260914077|ref|ZP_05920550.1| lipoprotein PlpD [Pasteurella dagmatis ATCC 43325]
 gi|260631710|gb|EEX49888.1| lipoprotein PlpD [Pasteurella dagmatis ATCC 43325]
          Length = 275

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S    + + G TD       A  N  LS  R
Sbjct: 138 GDFLFDFDKDALTAKGKEVVDSVATQLKSSGAKEVKVAGFTDRL---GSAAYNLDLSQRR 194

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR++I
Sbjct: 195 ANRVKARLIEQGVNAN-INAVGYGKAQQVKACEEYPFGKQLKDCLRPNRRVEI 246


>gi|330971267|gb|EGH71333.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 447

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L         +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+K GV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKRGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|163745646|ref|ZP_02153006.1| OmpA domain protein [Oceanibulbus indolifex HEL-45]
 gi|161382464|gb|EDQ06873.1| OmpA domain protein [Oceanibulbus indolifex HEL-45]
          Length = 641

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 17/307 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94
           I +AD    L+A          TD D+   +         ++   +  +   ++P     
Sbjct: 300 ISFADADITLLA-------APGTDSDSFDRVVGELENALPDVFALTAKLPKVEDPNAGPP 352

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NNIFYLSNSQQSEHCKNSLTRDSEK 153
           +    LS +  +         G  +    Y +    +    + ++  E            
Sbjct: 353 EFTATLSPEGQVQLRGRLTTEGLRDLADSYAKSHFGSSNVYTAARLDETLPADWATRVLT 412

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G +   S          +   +   + +K         L D   + +     +     + 
Sbjct: 413 GLEAMASLANGSVTVTPDRLEVTGNTGKKEANTTVASLLADKLGESADYSIDITYQEKLD 472

Query: 214 GVLFETTRTGILISIID--QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
            +    T       I +        F+  ++      +  +  I EVL    +  + I+G
Sbjct: 473 PIAGLPTPEECEAEIGEILTIGKITFEPGNATIDASALGTMDDIAEVLKRCGDIPLEIQG 532

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328
           +TD+         N  LS  RA S    L    V         G+        +  +   
Sbjct: 533 YTDSQ---GRETMNLSLSQSRAESVLNELRARRVLTSSFLA-KGYGEENPIADNQTEEGR 588

Query: 329 SANRRID 335
            ANRRI+
Sbjct: 589 EANRRIE 595


>gi|124002746|ref|ZP_01687598.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123991974|gb|EAY31361.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 775

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
                 F   S          L K+   L  +    + + G++D        + N  LS 
Sbjct: 666 SDFRIYFKFGSRKIEKYCHPSLDKLVNFLETNPKVKVELAGYSDEL---GSKKGNVGLSE 722

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
           DRA +    L++ G+   R++   G+     K  +   +    NRR++
Sbjct: 723 DRAKAVVDYLIEKGIDFSRLT-YKGYGKVSPKHPNKTKHGRILNRRVE 769


>gi|189466361|ref|ZP_03015146.1| hypothetical protein BACINT_02736 [Bacteroides intestinalis DSM
           17393]
 gi|189434625|gb|EDV03610.1| hypothetical protein BACINT_02736 [Bacteroides intestinalis DSM
           17393]
          Length = 385

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 30/189 (15%)

Query: 151 SEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
           +  GK   K +D+ E +IN E N +   L++ +      K  L ++  ++   +  +   
Sbjct: 224 TFGGKKFAKVSDIDEDAINAEINRYRSELAQAQADLANCKNSLANMKPEVKEVIKEIQTA 283

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
                                      F   S+       V +Q   ++L  + +    +
Sbjct: 284 G---------------------PRAIFFKIGSARLDDYGKVNIQLAAKILKANPDKKYKV 322

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
            G+ D +     A  N +LS  RA   Y  L+  GV +D++  + GF       + + +N
Sbjct: 323 AGYCDKA--TGSAAYNQKLSEKRAQVVYDALIAEGVDKDQLEFV-GFGGTENMFSKNYLN 379

Query: 329 SANRRIDIL 337
               R+ IL
Sbjct: 380 ----RVVIL 384


>gi|320156881|ref|YP_004189260.1| sodium-type flagellar protein motY [Vibrio vulnificus MO6-24/O]
 gi|319932193|gb|ADV87057.1| sodium-type flagellar protein motY precursor [Vibrio vulnificus
           MO6-24/O]
          Length = 254

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++++       +   L +I E + +++++  + +  +TD++   +++++   LS  RA S
Sbjct: 148 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 204

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                   G++EDRI ++ G+   R    +        NRR+ I +
Sbjct: 205 LRDYFKALGLTEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 249


>gi|300716387|ref|YP_003741190.1| outer membrane protein [Erwinia billingiae Eb661]
 gi|299062223|emb|CAX59340.1| predicted outer membrane protein [Erwinia billingiae Eb661]
          Length = 294

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 233 NTPMFDKSSS---IPLPETIVVLQK-IGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
              +F    S      P+    + K IG++         I + GHTD  P       N+ 
Sbjct: 175 GDVLFKFGKSMRHDMTPQGRQAVGKLIGQLHEDHVNLDSIEVIGHTD--PI-GKESSNYA 231

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           L   RA +  ++L+  G+    I   S     +  +AS
Sbjct: 232 LGARRASTVREMLIDGGLPAANIQATSA-GSSQPLVAS 268


>gi|269960160|ref|ZP_06174536.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835131|gb|EEZ89214.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 345

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              +  +   ++       I + GHTD          N  +S  RA  
Sbjct: 212 FQFGQKTLSRSQQSTIAALYSYISVDDRVTKILVDGHTDNV---GSQLANLTVSRQRAEQ 268

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L++ GV    + ++          +++     + NRR+ +
Sbjct: 269 VADALVQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311


>gi|158318969|ref|YP_001511477.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec]
 gi|158114374|gb|ABW16571.1| OmpA/MotB domain protein [Frankia sp. EAN1pec]
          Length = 200

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV-LFETTRTGIL 225
              E    L   S     A    + +    + + +  S L  D     + L    R+G  
Sbjct: 22  AGAESPGALGATSAPPPPADVPAEEITRSVRPLDAAGSVLTIDPADSVLPLVTEERSGDR 81

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           +++    +  +F   S          +  +   +  +T  +++ GHTD+         N 
Sbjct: 82  VTVTISAD-VLFAFDSDDLTEAARTEIATLAGRVGPATRTVTVLGHTDSL---GTPAYNV 137

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH-----HRLKIASD-PMNSANRRIDI 336
            LS  RA +   +L  +  S  R+S    G A       R   + D    + NRR+ I
Sbjct: 138 ILSQRRANAVADLLRPAVPSGTRVSATGRGGADPVAPNTRPDGSDDAAGRALNRRVQI 195


>gi|17545455|ref|NP_518857.1| peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum GMI1000]
 gi|17427747|emb|CAD14266.1| probable peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum GMI1000]
          Length = 172

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 72  FDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 128

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 129 RRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIV 171


>gi|319783370|ref|YP_004142846.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169258|gb|ADV12796.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 185

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         ++ I + L           + I GHTDA       + N  LS  R
Sbjct: 76  FAFGSAAIANSQYDKIETIADALRRILRRDPGARVLIEGHTDAV---GSFQSNQALSEQR 132

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S  + L++         +  G+    L + +   N  NRR+ +
Sbjct: 133 AASLKRTLVREFRVPGHALETVGYGEEFLLVQTQNENWQNRRVTL 177


>gi|124006521|ref|ZP_01691354.1| fibronectin-binding protein, putative [Microscilla marina ATCC
           23134]
 gi|123987934|gb|EAY27614.1| fibronectin-binding protein, putative [Microscilla marina ATCC
           23134]
          Length = 130

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269
           ++ G  F      I +SI        F   S     +    + K+ + +   +   ISI 
Sbjct: 6   LINGFAFAQKHKAIRVSIY-------FGGGSYYIDAKQKRNIVKVIKQIKDLSKYQISIT 58

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
            HTD         + W LS  R+ +  + L++  + + ++  I  F        +D  N 
Sbjct: 59  SHTDN--IGGKEYNEW-LSKMRSNAVLKQLIEHQIKKGKVL-IKDFGQDNPMYTNDSHNG 114

Query: 330 --ANRRIDIL 337
              NRR+D+L
Sbjct: 115 RIRNRRVDLL 124


>gi|332519342|ref|ZP_08395809.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045190|gb|EGI81383.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 311

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 13/254 (5%)

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
             ++ I  +  ++      +  I          +LE    YL ++              E
Sbjct: 62  DEKSSIRFTASDNFNFKVSNFAILEPVSDGLKTQLERVAAYLKDNPDKAIDVTGYYTAEE 121

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K +    +  L ++   +  +    +S +KI           L    +S  SG    +I 
Sbjct: 122 KNESAFPNLGLARANAIKNYFVSIGVSTKKINTYGELN--DSLVPDNNSIFSGPAEYSIA 179

Query: 213 KGVLFETTRTGILISIIDQ--RNTPM--FDKSSS--IPLPETIVVLQKIGEVLAHSTE-V 265
                +T+    L+++ +    N+ M  FD  ++      +    + KI   +       
Sbjct: 180 TIDANDTSEQEALVALKEDIKANSLMLYFDTGAASINLTTQQREKVSKIVRYIDKVDNAK 239

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324
           I I GHTD +        N  L  +RA  A   L+++G++ ++I+  S G        ++
Sbjct: 240 IRITGHTDNT---GNRETNIGLGKNRAEFAKSYLVQNGITSNKINTFSKGPDEPIADNST 296

Query: 325 DPMNSANRRIDILV 338
           +   + NRR+ + +
Sbjct: 297 EAGKAKNRRLVVTI 310


>gi|313141840|ref|ZP_07804033.1| OmpA/MotB [Helicobacter canadensis MIT 98-5491]
 gi|313130871|gb|EFR48488.1| OmpA/MotB [Helicobacter canadensis MIT 98-5491]
          Length = 263

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKE-------KILAMKRKKRLQDLAKKISSTLSGLVA 208
           D  K T+ E SI    +     +  E       +   +       +   K+ S +     
Sbjct: 29  DAKKLTEAEGSIRGSLSVLSGGIKIEESRNRILQQADITTDPETAEQIIKVQSEILEFKE 88

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE--V 265
           D  V          G    I+      +FD+  ++I   + I+ L+++  +L    +   
Sbjct: 89  DARVSLGPSVVEDDGKEGFILRFHGRLLFDEEKTAIENADEILFLKRLALILQKMPQTMH 148

Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322
           + I G+ D    +     +D+  LS  RA +  ++L+++ V+  +I+ + G A +  L  
Sbjct: 149 LDIIGYADNVEGKPNLKYQDSLGLSALRASNVAKILIENQVNPQKITSLGGGATNFLLPN 208

Query: 323 ASDPMNSANRRID 335
            +    + NRR++
Sbjct: 209 TNAENRAQNRRVE 221


>gi|221066746|ref|ZP_03542851.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220711769|gb|EED67137.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 170

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P    +++   + + ++     I RGHTD+   R     N  L   R+ S 
Sbjct: 69  FDFDSYTVRPSDRGIVESHAQWMRNNPRQALILRGHTDS---RGGTEYNLALGQKRSESV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            Q L   G+   R+  IS +   RL    +S+  +  NRR++
Sbjct: 126 LQSLQILGIDPSRVEAIS-YGKERLVDLGSSNDAHQLNRRVE 166


>gi|111219587|ref|YP_710381.1| lipoprotein [Frankia alni ACN14a]
 gi|111147119|emb|CAJ58764.1| hypothetical protein; putative lipoprotein [Frankia alni ACN14a]
          Length = 168

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+         +  +   LA S   I + G+TD+  F   A +   LS  RA + 
Sbjct: 59  LFAFDSAELTATARRQIADVAGRLAGSAAPIRVDGYTDS--FGTPAYNV-ILSQRRASAV 115

Query: 296 YQVLMKSGVSEDRISKISGFA-------HHRLKIASDP-MNSANRRIDI 336
             +L  +      +    G               + DP   + NRR+ I
Sbjct: 116 ADLLRPA-APAGFLVSARGHGSADPIAHDTLPDGSDDPAGRAINRRVTI 163


>gi|269962899|ref|ZP_06177239.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832453|gb|EEZ86572.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS- 310
           L      +   +  I+I GHTD   ++     N  LSL RA S    L K  +  D    
Sbjct: 77  LNAFVHEIEGLSGRITIVGHTD---YKGSLEYNEALSLRRAQSVESFL-KEKLDPDHYDW 132

Query: 311 KISGFAHHRLKI--ASDPMNSANRR 333
           ++  F   +      +D   + NRR
Sbjct: 133 EVKYFGETQPLALGKTDEDRAENRR 157



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S   PE +  L    + L      I + GHTD     ++   N +L+  RA 
Sbjct: 188 TPHFDFDESELKPEDLAKLDSFTDKLQGLQGSILVAGHTD--QIGSLLY-NEKLAQRRAS 244

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIA--SDPMNSANRR 333
              + L K+ +   +   ++  F   +  I   S   N+ NRR
Sbjct: 245 EVVKYL-KTKIDPSQFLWEVKSFGELQPVINERSKEANALNRR 286


>gi|154252570|ref|YP_001413394.1| peptidoglycan-associated lipoprotein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156520|gb|ABS63737.1| Peptidoglycan-associated lipoprotein [Parvibaculum lavamentivorans
           DS-1]
          Length = 166

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   S    E    LQ+    +        ++ GH D    R     N  L   R
Sbjct: 56  DRVFFDTDQSSLSDEARATLQRQAAWMQLYPNLTFTVEGHADE---RGTREYNLALGGRR 112

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333
           A SA   L+  GV   R++ +S +   R     +++   + NRR
Sbjct: 113 ANSAKDYLVSLGVDGGRLNTVS-YGKERPVCLDSNENCWAQNRR 155


>gi|53725459|ref|YP_102587.1| ompA family protein [Burkholderia mallei ATCC 23344]
 gi|52428882|gb|AAU49475.1| ompA family protein [Burkholderia mallei ATCC 23344]
          Length = 223

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           MF      ++    +    L ++ + L     + +SI G+TD          N +LS  R
Sbjct: 107 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 163

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337
           A +    L+ +GV  D +    G       +  D    A        NRR++++
Sbjct: 164 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLSPNRRVEVV 216


>gi|49182348|gb|AAT57676.1| OmpA [Pasteurella multocida]
          Length = 349

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 236 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 292

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 293 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 349


>gi|153812960|ref|ZP_01965628.1| hypothetical protein RUMOBE_03367 [Ruminococcus obeum ATCC 29174]
 gi|149830907|gb|EDM85997.1| hypothetical protein RUMOBE_03367 [Ruminococcus obeum ATCC 29174]
          Length = 335

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 109/341 (31%), Gaps = 69/341 (20%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           +++K   ++   N   W+  Y+D M  ++  F+++  +                      
Sbjct: 1   MRRKKKSENNGFN--VWR-SYSDMMAGVLLLFVLIMCVTLFQAQK--------------- 42

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                      +  E   +    +++ E  T+  +D +     + +  Q           
Sbjct: 43  -----------SYNESLQERDEKIALQEEYTQELLDKQNALDKKDETLQN---------- 81

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
             Q    K    + +E+ + L       K      N     L ++      ++ ++  + 
Sbjct: 82  --QDAQLKTQDEKLAEQEQQLAALAAKLKEQESTLNAQQSALDEKTAQLKDQQAQIDQII 139

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI- 255
              +  +  L  +     +  +       +++     + MFD   +         L++I 
Sbjct: 140 GVKADVIEALKNEFSKNNINVDIDAQTGALTL---EASVMFDYDQAELTDAGKQALEQIL 196

Query: 256 ---GEVLAHSTE-----VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVL--MKSGV 304
               +VL           I I G+TD     +     N +LS  R+ +  Q L  ++   
Sbjct: 197 PIYCKVLLQDDYMKYLAEIIIDGYTD----TDGDYSYNLQLSQQRSLAVAQYLLDIQGNF 252

Query: 305 SE-------DRISKISG--FAHHRLKIASDPMNSANRRIDI 336
            +       ++   ++G   A+  L    +    A+RR+++
Sbjct: 253 LDTTQSQNLEKYLTVNGHSMANPVLDANGNVDKDASRRVEV 293


>gi|153831615|ref|ZP_01984282.1| OmpA family protein [Vibrio harveyi HY01]
 gi|148872125|gb|EDL70942.1| OmpA family protein [Vibrio harveyi HY01]
          Length = 301

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   SI        L      +   +  I+I GHTD   F+     N +LS+ RA S  
Sbjct: 62  FDFDKSIIREADAASLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVE 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             L +    E    ++  F   +      SD   + NRR
Sbjct: 119 AYLQQQLNPEQYDWEVKHFGESQPLALGKSDQARAENRR 157



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S   PE +  L      L      I + GHTD     +++  N +L+  RA 
Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEQLAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
           +    L         + ++  F   +  I  +    N+ NRR
Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286


>gi|253990221|ref|YP_003041577.1| outer membrane protein A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781671|emb|CAQ84834.1| outer membrane protein a (outer membrane protein ii*) [Photorhabdus
           asymbiotica]
          Length = 366

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 17/124 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F  +SS    E    L ++   LAH       + + G+TD          N +LS
Sbjct: 237 RSDVLFAFASSELKAEGKHTLDQLYTELAHIDPTQGKVLVLGYTDRI---GKDVYNQKLS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN--------RRIDILV 338
             RA S    L+  G+    IS   G         S  D +   N        RR++I +
Sbjct: 294 QKRAQSVVDYLVTKGIPAGSISA-EGHGKANPVTGSTCDKVLKPNLISCLAPDRRVEIEI 352

Query: 339 EDRQ 342
           +  +
Sbjct: 353 QGTK 356


>gi|239504183|ref|ZP_04663493.1| small protein A (tmRNA-binding) [Acinetobacter baumannii AB900]
          Length = 259

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283
           I D+  + +F  D+  +  + E    + KI E +  S     I + G TD  P    +  
Sbjct: 141 IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 197

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335
           N  LS  RA +  ++L++ GV   RI +I   +   +       N        + NRR++
Sbjct: 198 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSDNNSSQLIQCLAPNRRVN 256

Query: 336 I 336
           I
Sbjct: 257 I 257


>gi|126046392|gb|ABN73089.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNKERMKDRKV 356


>gi|114332455|ref|YP_748677.1| OmpA/MotB domain-containing protein [Nitrosomonas eutropha C91]
 gi|114309469|gb|ABI60712.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91]
          Length = 231

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   ++  P  +  L      L      + I  G+TD     + A  N +LS+ RA +
Sbjct: 113 LFDFDKAVLKPAGMQALDDFSRNLEGVNYDLIIAVGYTD--RIGSEAY-NKKLSVRRAEA 169

Query: 295 AYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRIDILV 338
               L+  G+  DRI          ++G       A   L     P     RR++I V
Sbjct: 170 VKNYLVSKGIGADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPD----RRVEIEV 223


>gi|296534740|ref|ZP_06897115.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957]
 gi|296264932|gb|EFH11182.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957]
          Length = 97

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +        ++ +  +  + + T  I + GH D        + N RLS  RA +    L+
Sbjct: 1   ADLTDRARQIISEAAQNSSRTQTTRIEVAGHADR---SGSPQYNQRLSQRRADAVAAELV 57

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           + GVS   I+ +  F   R  + +        NRR++I++
Sbjct: 58  RQGVSRSAIT-VQAFGESRPLVPTADGVREPQNRRVEIVL 96


>gi|288957826|ref|YP_003448167.1| peptidoglycan-associated lipoprotein [Azospirillum sp. B510]
 gi|288910134|dbj|BAI71623.1| peptidoglycan-associated lipoprotein [Azospirillum sp. B510]
          Length = 155

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F        PE    L +  + L    +  +++ GH D    R     N  L   R
Sbjct: 50  DRVFFGLDRFDLSPEARATLDRQAKWLQTYGSVTVTVEGHADE---RGTREYNLALGERR 106

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
           A S    L   G+   R++ +S        + S+    S NRR
Sbjct: 107 ANSVKNYLAAKGIPASRVNVVSYGKERPAVVGSNEAAWSQNRR 149


>gi|254429094|ref|ZP_05042801.1| OmpA family protein [Alcanivorax sp. DG881]
 gi|196195263|gb|EDX90222.1| OmpA family protein [Alcanivorax sp. DG881]
          Length = 203

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           E   +   +  VL       +S++  TD    +  A  N +L+  R     Q L   G+S
Sbjct: 85  EARRLESNLA-VLKQYPTLQVSVQAFTDE---KGAASYNQKLAARRLDRVVQYLRDGGIS 140

Query: 306 EDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQ 342
             RI +++ G     L  A++     NRR++++  D Q
Sbjct: 141 NGRIKRVALGEELPILPDANNEQRVINRRVELMPLDAQ 178


>gi|305666576|ref|YP_003862863.1| OmpA/MotB family outer membrane protein [Maribacter sp. HTCC2170]
 gi|88708847|gb|EAR01082.1| outer membrane protein, OmpA/MotB family [Maribacter sp. HTCC2170]
          Length = 393

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 24/207 (11%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K  LTR  EK   L +  + E+   ++       + +E  LA +  K  +  A+  +  
Sbjct: 201 VKKGLTRKGEKKLALIQEMEKEQQRVQDSLANELRIKEEATLAQRLAKEKEK-ARLAAIE 259

Query: 203 LSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            + + A+N  K  L  + +  G++           F  +SS     +  VL  +  +L  
Sbjct: 260 KARIDAENQRKQQLENSIKELGLV----------YFGFNSSYLNKNSKSVLGLLANLLKE 309

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                + I  HTD+        + W LS  R       LM  G+SE+R+     F   +L
Sbjct: 310 KPSVHLKITSHTDSR--GASDYNKW-LSERRVERTKNYLMSIGISENRLVA-EAFGEEQL 365

Query: 321 KIA-------SDPMNSANRRIDILVED 340
                     S   +  NRR +  V +
Sbjct: 366 TNECGDGVRCSAEKHRKNRRSEFEVTE 392


>gi|319897366|ref|YP_004135562.1| outer membrane protein p5 precursor (omp p5) [Haemophilus
           influenzae F3031]
 gi|317432871|emb|CBY81237.1| outer membrane protein p5 precursor (omp p5) [Haemophilus
           influenzae F3031]
          Length = 348

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     +   +  +LS  RA S 
Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVAVAGYTD--RIGSDEFNV-KLSQKRADSV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344


>gi|238749729|ref|ZP_04611234.1| Outer membrane protein A [Yersinia rohdei ATCC 43380]
 gi|238712384|gb|EEQ04597.1| Outer membrane protein A [Yersinia rohdei ATCC 43380]
          Length = 358

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 230 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 287 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|238022763|ref|ZP_04603189.1| hypothetical protein GCWU000324_02674 [Kingella oralis ATCC 51147]
 gi|237865966|gb|EEP67102.1| hypothetical protein GCWU000324_02674 [Kingella oralis ATCC 51147]
          Length = 230

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F        PE I  L  +   L+ S    + + G+TD   F    + N  LS  RA +
Sbjct: 89  LFGFDKYNLRPEAITTLNDLSAKLSQSNVQSVRVEGNTD---FMGSDKYNQALSERRANT 145

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L++ GV  DRIS + G    +
Sbjct: 146 VANYLVQQGVPADRISAV-GLGETQ 169


>gi|319776591|ref|YP_004139079.1| outer membrane protein p5 precursor (omp p5) [Haemophilus
           influenzae F3047]
 gi|317451182|emb|CBY87415.1| outer membrane protein p5 precursor (omp p5) [Haemophilus
           influenzae F3047]
          Length = 348

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     +   +  +LS  RA S 
Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVAVAGYTD--RIGSDEFNV-KLSQKRADSV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344


>gi|307730629|ref|YP_003907853.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|323526963|ref|YP_004229116.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|307585164|gb|ADN58562.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
 gi|323383965|gb|ADX56056.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 215

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|261856832|ref|YP_003264115.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
 gi|261837301|gb|ACX97068.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2]
          Length = 373

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            YFN         +          +    N   + +     K S+  ++G    K Q Q 
Sbjct: 93  GYFNLGKFGYTAYTTPQGTLTGEIKLQGVNLDVVGLWPITDKFSLFGRVGVNYAKAQDQF 152

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
           +      ++N   S    N       +           +      N  +       +++ 
Sbjct: 153 VGTGAVLVTNPSPSARDTNYKFGVGVQYALTESLDVRAEVERYRINDAVGNKGDIDLISA 212

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
               R    A++ +   + L A      V+       + +S        +FD + S+  P
Sbjct: 213 GLVYRFGQKAREPALAPAPLAAIATPAPVVERHAPKKVTLS-----ADSLFDFNKSVVKP 267

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-V 304
                L ++   L  +    I + GHTD     + A  N +LS  RA +    L+ SG +
Sbjct: 268 AGKRALDQLARDLNGTDYDQIMVIGHTD--RIGSHAY-NLKLSTRRAEAVKDYLISSGQI 324

Query: 305 SEDRISK---------------ISGFAHHRLKIASDPMNSANRRIDI 336
              +IS                +   A   L     P     RR+++
Sbjct: 325 PAHKISAKGVDGADPVTKPGDCVGSKATPALIACLQPD----RRVEV 367


>gi|94502195|ref|ZP_01308691.1| OmpA family protein [Oceanobacter sp. RED65]
 gi|94425675|gb|EAT10687.1| OmpA family protein [Oceanobacter sp. RED65]
          Length = 143

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETI-VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS    +    +L K+ ++       +S+ G TD          N  L+ DRA + 
Sbjct: 43  FDFDSSELTGKARMKLLAKMADLQKQGVSSVSVFGFTDNV---GAEAYNKNLAKDRASTV 99

Query: 296 YQVLMKSGVSEDRISKISGF--AHHRLKIASDPMNSANRRIDILVED 340
            + L   GV   +I+++ G     + +   SD     NRR +I + +
Sbjct: 100 ARFLANGGV---QINEVVGKPLCCYLVDNESDQNRHVNRRAEIHLGN 143


>gi|330901158|gb|EGH32577.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 451

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L       + +++ G  DA   P R        LS  R
Sbjct: 350 FAQGSARLDNKAQQDLKRVADYLKTSGKLNQHVTLVGFGDAKSDPERAAL-----LSRLR 404

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 405 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 451


>gi|209809116|ref|YP_002264654.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
 gi|208010678|emb|CAQ81065.1| outer membrane protein, OmpA family [Aliivibrio salmonicida
           LFI1238]
          Length = 275

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+   P+ +V L +  ++L  H    + I GH DA         N  L+++RA   
Sbjct: 164 FAFNSAELNPKYVVNLSEASQLLKKHEDFKLLITGHADAI---GEEDGNQELAIERAKQV 220

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-ASDPM-NSANRRIDILVED 340
            + L   G++ +RI  +     +      ++P     NRR+ I + +
Sbjct: 221 KRYLSIFGLALNRIH-VDAVGSNDPYFEGTEPHVRLTNRRVTIELLE 266


>gi|251788834|ref|YP_003003555.1| outer membrane protein A [Dickeya zeae Ech1591]
 gi|247537455|gb|ACT06076.1| OmpA domain protein transmembrane region-containing protein
           [Dickeya zeae Ech1591]
          Length = 355

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD        + N  LS
Sbjct: 227 KSDVLFNFNKATLKPEGQRSLDQLYSQLSSLDPKDGSVVVLGFTDRL---GSDQYNQTLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337
             RA +    L+  G+  ++IS   G            A+    +A       +RR++I 
Sbjct: 284 TKRAQTVVDYLVHKGIPSNKISA-RGMGKANPVSGSTCANVKARAALIDCLAPDRRVEIE 342

Query: 338 VE 339
           V+
Sbjct: 343 VK 344


>gi|149927733|ref|ZP_01915985.1| outer membrane protein [Limnobacter sp. MED105]
 gi|149823559|gb|EDM82789.1| outer membrane protein [Limnobacter sp. MED105]
          Length = 174

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q   + L  +    + ++G+TD    R  A  N  L   RA + 
Sbjct: 73  FDYDSYTVKSEYRELVQNHAKYLVANPNRKVVVQGNTDE---RGGAEYNLALGQRRADAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
             +++  GV E +I  +S G    +   +++   + NRR DI+
Sbjct: 130 KTLMLALGVKEGQIETVSFGKEKPKATGSNEAAYAENRRSDIV 172


>gi|160897524|ref|YP_001563106.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160363108|gb|ABX34721.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 174

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +         +++   + L  +    + +RGHTD    R     N  L   RA + 
Sbjct: 73  FDFDAYTIRNSDRAIVESHAQWLRSNPGRSVMLRGHTDR---RGGIEYNLALGQKRADAV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
              L   GV+  R+  +S +   RL     S+  +  NRR++
Sbjct: 130 RNSLQLLGVNPARVESVS-YGKERLADEGTSEEAHQRNRRVE 170


>gi|75676986|ref|YP_319407.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
 gi|74421856|gb|ABA06055.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255]
          Length = 663

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S     +    LQ I +    V+A +   +  I GHTDA        DN  LS  R
Sbjct: 542 FETGSWDISDDQAAKLQVIADGINRVVARNPGEVFLIEGHTDAV---GNDVDNLSLSDRR 598

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA ++L +            G+    LKI +D  +  NRR+ +
Sbjct: 599 AQSAAELLTQQFQVPPENLVTQGYGEQNLKIQTDGPSRENRRVTV 643


>gi|222086232|ref|YP_002544764.1| outer membrane protein [Agrobacterium radiobacter K84]
 gi|221723680|gb|ACM26836.1| outer membrane protein [Agrobacterium radiobacter K84]
          Length = 838

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V   IG+++     E   I GHTDA      A  N  LS  R
Sbjct: 723 FATGSAEIPMSQASTLRGVADAIGQIIKKDPTETFLIEGHTDAV---GSAESNLILSDQR 779

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S  +VL    GV  + +    G+    LK+ +      NRR+ I
Sbjct: 780 AESVAKVLSDVYGVPPENLVA-QGYGEQYLKVNTQGPEQENRRVTI 824


>gi|59801906|ref|YP_208618.1| Omp3 [Neisseria gonorrhoeae FA 1090]
 gi|194099400|ref|YP_002002501.1| Omp3 [Neisseria gonorrhoeae NCCP11945]
 gi|239999644|ref|ZP_04719568.1| Omp3 [Neisseria gonorrhoeae 35/02]
 gi|240014818|ref|ZP_04721731.1| Omp3 [Neisseria gonorrhoeae DGI18]
 gi|240017267|ref|ZP_04723807.1| Omp3 [Neisseria gonorrhoeae FA6140]
 gi|240081094|ref|ZP_04725637.1| Omp3 [Neisseria gonorrhoeae FA19]
 gi|240113304|ref|ZP_04727794.1| Omp3 [Neisseria gonorrhoeae MS11]
 gi|240116345|ref|ZP_04730407.1| Omp3 [Neisseria gonorrhoeae PID18]
 gi|240118630|ref|ZP_04732692.1| Omp3 [Neisseria gonorrhoeae PID1]
 gi|240121340|ref|ZP_04734302.1| Omp3 [Neisseria gonorrhoeae PID24-1]
 gi|240124175|ref|ZP_04737131.1| Omp3 [Neisseria gonorrhoeae PID332]
 gi|240126207|ref|ZP_04739093.1| Omp3 [Neisseria gonorrhoeae SK-92-679]
 gi|240128845|ref|ZP_04741506.1| Omp3 [Neisseria gonorrhoeae SK-93-1035]
 gi|254494359|ref|ZP_05107530.1| outer membrane protein P.III [Neisseria gonorrhoeae 1291]
 gi|260439836|ref|ZP_05793652.1| Omp3 [Neisseria gonorrhoeae DGI2]
 gi|268595455|ref|ZP_06129622.1| outer membrane protein PIII [Neisseria gonorrhoeae 35/02]
 gi|268597207|ref|ZP_06131374.1| outer membrane protein PIII [Neisseria gonorrhoeae FA19]
 gi|268599383|ref|ZP_06133550.1| outer membrane protein P.III [Neisseria gonorrhoeae MS11]
 gi|268602011|ref|ZP_06136178.1| outer membrane protein P.III [Neisseria gonorrhoeae PID18]
 gi|268604343|ref|ZP_06138510.1| outer membrane protein P.III [Neisseria gonorrhoeae PID1]
 gi|268682799|ref|ZP_06149661.1| outer membrane protein P.III [Neisseria gonorrhoeae PID332]
 gi|268684790|ref|ZP_06151652.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-92-679]
 gi|268687227|ref|ZP_06154089.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-93-1035]
 gi|291043111|ref|ZP_06568834.1| outer membrane protein PIII [Neisseria gonorrhoeae DGI2]
 gi|293398450|ref|ZP_06642628.1| outer membrane protein P.III [Neisseria gonorrhoeae F62]
 gi|129131|sp|P07050|OMP3_NEIGO RecName: Full=Outer membrane protein P.III; AltName:
           Full=Gonococcal protein III; Short=PIII; Flags:
           Precursor
 gi|44890|emb|CAA28752.1| unnamed protein product [Neisseria gonorrhoeae]
 gi|59718801|gb|AAW90206.1| outer membrane protein PIII [Neisseria gonorrhoeae FA 1090]
 gi|193934690|gb|ACF30514.1| Omp3 [Neisseria gonorrhoeae NCCP11945]
 gi|226513399|gb|EEH62744.1| outer membrane protein P.III [Neisseria gonorrhoeae 1291]
 gi|268548844|gb|EEZ44262.1| outer membrane protein PIII [Neisseria gonorrhoeae 35/02]
 gi|268550995|gb|EEZ46014.1| outer membrane protein PIII [Neisseria gonorrhoeae FA19]
 gi|268583514|gb|EEZ48190.1| outer membrane protein P.III [Neisseria gonorrhoeae MS11]
 gi|268586142|gb|EEZ50818.1| outer membrane protein P.III [Neisseria gonorrhoeae PID18]
 gi|268588474|gb|EEZ53150.1| outer membrane protein P.III [Neisseria gonorrhoeae PID1]
 gi|268623083|gb|EEZ55483.1| outer membrane protein P.III [Neisseria gonorrhoeae PID332]
 gi|268625074|gb|EEZ57474.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-92-679]
 gi|268627511|gb|EEZ59911.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012717|gb|EFE04700.1| outer membrane protein PIII [Neisseria gonorrhoeae DGI2]
 gi|291610921|gb|EFF40018.1| outer membrane protein P.III [Neisseria gonorrhoeae F62]
 gi|317164900|gb|ADV08441.1| Omp3 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 236

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +    + + GHTD   F    + N  LS  RAY 
Sbjct: 98  LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSEKYNQALSERRAYV 154

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 155 VANNLVSNGVPASRISAV-GLGESQ 178


>gi|190571199|ref|YP_001975557.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018599|ref|ZP_03334407.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357471|emb|CAQ54905.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995550|gb|EEB56190.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 159

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270
            KGV        ++  I D      F    S     +   L  + EVL ++ +  +++ G
Sbjct: 23  KKGVNTTNKMNAVVKQIGD--KRVFFGYDESSISEVSADALLDVMEVLQNNPDAKVTLTG 80

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPM 327
           HTD    R     N  L   RA +A + ++  +   E+RI   S          +  D  
Sbjct: 81  HTDN---RGSHEYNLALGARRADAAKKFMVSCTPYLENRIKTAS-KGETEPLVNVKDDSR 136

Query: 328 N-------SANRRID 335
           N       + NRR++
Sbjct: 137 NSKYEKEHAKNRRVE 151


>gi|262193343|ref|YP_003264552.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262076690|gb|ACY12659.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 254

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   +    +   VL +  E +  +     + + GHTD          N  LS  RA +
Sbjct: 157 FDFDEAGIRDDAREVLTQAAECIRQAPADSGVYVEGHTDG---SGTEEYNVALSERRART 213

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
             + L + G+   R   +         + S      +RR++
Sbjct: 214 VTEFLERLGIDPGRF-SVIAKGEG---VPSGEGTDKDRRVE 250


>gi|84687224|ref|ZP_01015105.1| Outer membrane protein, OmpA/MotB family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664812|gb|EAQ11295.1| Outer membrane protein, OmpA/MotB family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 647

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 15/267 (5%)

Query: 73  GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
           GK +++ S      QNP       K D +I                + +   +R      
Sbjct: 379 GKEIVSNSGDRIVVQNPDGTYQVLKNDDTILRQPGVVVSTKSYNDGSTRTVVERDNGVRI 438

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
               +      K +    +     L   T   + +++++     P+   +          
Sbjct: 439 VTIRAADGTVLKRTRVMPNGDQYVLFDDTVEAQPVSQQDVQDYEPIDDIRASDSDEAALR 498

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL----PET 248
           + L   +        +   V+           +I +    +   FD  S++       E 
Sbjct: 499 EALMASMDRDPGRTYSLRQVRQFS-GVRDLAPVIEV----DAITFDTGSAVIRSGQAEEL 553

Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSE 306
             + Q I  V+    + +  I GHTDA      A  N  LS  RA S    L +   V  
Sbjct: 554 AALGQAIRSVIEERPDAVFLIEGHTDAV---GGAAYNLALSDRRAESVALALTEYFDVPP 610

Query: 307 DRISKISGFAHHRLKIASDPMNSANRR 333
           + +    G+    LKI +      NRR
Sbjct: 611 ENMI-TQGYGESELKIVTSEAERQNRR 636


>gi|83950087|ref|ZP_00958820.1| peptidoglycan-associated lipoprotein [Roseovarius nubinhibens ISM]
 gi|83837986|gb|EAP77282.1| peptidoglycan-associated lipoprotein [Roseovarius nubinhibens ISM]
          Length = 186

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F              L    + +L ++     I GH D          N  L   R
Sbjct: 76  DRVLFPVDQHTLTSTAQQTLNGQAQWLLRNTDYDALIEGHADEQ---GTREYNLALGARR 132

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337
           A S  + L+  GV   R+ K+  +   R     + +   + NRR + ++
Sbjct: 133 ANSVQEYLISQGVPSTRL-KVISYGKERPIEICSEESCYAQNRRSVTVI 180


>gi|332525605|ref|ZP_08401760.1| peptidoglycan-associated lipoprotein [Rubrivivax benzoatilyticus
           JA2]
 gi|332109170|gb|EGJ10093.1| peptidoglycan-associated lipoprotein [Rubrivivax benzoatilyticus
           JA2]
          Length = 180

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   E   V+    + L    T  ++  GHTD    R     N  L   RA + 
Sbjct: 79  FDFDSYVVKDEYKPVIDANAKFLTLDKTVRLTAEGHTDE---RGGREYNLALGQKRAEAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   G +  ++  +S F   R         +   NRR+++
Sbjct: 136 VKALQVMGAAAGQVEPVS-FGKERPADPGHDEAAWSKNRRVEL 177


>gi|307132015|ref|YP_003884031.1| outer membrane protein A (3a;II*;G;d) [Dickeya dadantii 3937]
 gi|306529544|gb|ADM99474.1| outer membrane protein A (3a;II*;G;d) [Dickeya dadantii 3937]
          Length = 353

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD        + N  LS
Sbjct: 225 KSDVLFNFNKATLKPEGQRSLDQLYSQLSTLDPKDGSVVVLGFTDRL---GSDQYNQTLS 281

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337
             RA +    L+  G+  ++IS   G         S   N           + +RR++I 
Sbjct: 282 TKRAQTVVDYLVHKGIPANKISA-RGMGKANPVSGSTCTNVKARAALIDCLAPDRRVEIE 340

Query: 338 VE 339
           V+
Sbjct: 341 VK 342


>gi|218531252|ref|YP_002422068.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|218523555|gb|ACK84140.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
          Length = 296

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--AKKISSTLSGLVADNI 211
              L     +     ++       L+ E     +   RL+D    ++ +   + L A + 
Sbjct: 40  ASQLKDDQTVPLPEYRQIERERDRLATENADLSREVARLEDELRKERTNRLQTYLSAVSS 99

Query: 212 VKGVLFETTRTGILISIIDQRN-------------TPMFDKSSSIPLPETIVVLQKIGEV 258
            +  +  T R  +++   +  N               +F         +   V+  I   
Sbjct: 100 ERDRILRTLRDRLVVDFPELENIVSIETGALRFKGDGLFKTDRWQLAEDKRRVVTAIATR 159

Query: 259 LAH----------------------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           L                          E + I GHTDA       R N+ LS +RA    
Sbjct: 160 LNELLPCYTFGKAARWQASCNAAGAVIEAVQIEGHTDA---SGQDRSNFSLSTERAVETL 216

Query: 297 QVLMKS--GVSEDR------ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             ++     + ++R      +  +SG+   R    +        NRRID+ +
Sbjct: 217 FAMIGREPALLDNRNSAGQPVLSVSGYGRLRPVADNTSERGRATNRRIDLRI 268


>gi|186475502|ref|YP_001856972.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815]
 gi|184191961|gb|ACC69926.1| OmpA/MotB domain protein [Burkholderia phymatum STM815]
          Length = 215

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 18/115 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD   +I  P     L  +   +      + +  G+TD     +   ++ RLSL RA +
Sbjct: 101 LFDFDKAILKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
               L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 158 VKAYLVSKGIEANRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|146281899|ref|YP_001172052.1| putative outer membrane protein [Pseudomonas stutzeri A1501]
 gi|145570104|gb|ABP79210.1| putative outer membrane protein [Pseudomonas stutzeri A1501]
          Length = 229

 Score = 55.7 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
            FE  R   ++ +    ++        + LP T+  + ++ +++       + I GH D+
Sbjct: 78  RFEVERRDNVLVVTAPVDSSFNPDRPGMLLPVTLGPITRVAKLVEKDEKTAVVILGHADS 137

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332
           +        N  +S +RA +   +   SG   DR+ +I G      + A+D     + NR
Sbjct: 138 T---GADDVNRTISRERASAVAAIFRLSGFKHDRL-RIRGLGSDMPRAANDSKEGRAMNR 193

Query: 333 RIDILVEDR 341
           R+++++  +
Sbjct: 194 RVEMVLAPQ 202


>gi|269123013|ref|YP_003305590.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268314339|gb|ACZ00713.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2092

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 27/187 (14%)

Query: 155  KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
              L +   + K + ++ N  +   +K         K L++L  KIS      V + I   
Sbjct: 1925 NSLGELDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKIS------VIEKIKMN 1978

Query: 215  VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHT 272
                 T  G  + I                      +L  I   L  +     I I G+T
Sbjct: 1979 EDDLYTLDGYRLGIH-------------ELTKSQEEMLMNIVRELNENYKNRKIYITGYT 2025

Query: 273  DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED---RISKISGFAHHRLKIASDPMNS 329
            D     +    N  L L RA    + L + G+      R    SG+ +      S    S
Sbjct: 2026 DNV---SGEDLNLELGLKRANVVAKKLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRS 2082

Query: 330  ANRRIDI 336
            +NRR++I
Sbjct: 2083 SNRRVEI 2089


>gi|167035280|ref|YP_001670511.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166861768|gb|ABZ00176.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 325

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 16/228 (7%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
           S +     +   N   + S+    +  K ++T +  K     +S          ++    
Sbjct: 21  SHSPDGSKEGGSNWWPFGSDKVAEQEVKAAVTENVAKADAKSESASRWWWPFGGDDKQAK 80

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
                KI     +  L +   K+   +     +   +  +   T   + +      + P 
Sbjct: 81  GPVVPKIDQKATQAWLDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP- 136

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
                ++ LP T+  + ++ + +    +  + + GH D+      A  N +LSL+RA S 
Sbjct: 137 -----NMLLPMTLGPITRVAKTVEGDPKTAVLVLGHADS---SGAAAANQKLSLERAASV 188

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
             +   SG+  DR++ + G      + A+D     S NRR+++L+  +
Sbjct: 189 SAIFRLSGLQRDRLT-LKGMGSVMPRAANDSAEGRSLNRRVEMLLTPQ 235


>gi|17861366|gb|AAK61593.1| OmpA [Pasteurella multocida]
          Length = 348

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDCL---GSDAYNLKLSQRRADTV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348


>gi|117920854|ref|YP_870046.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117613186|gb|ABK48640.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 264

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                 N++  S       +   R S     +  +        D   G          L 
Sbjct: 2   MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLGGGALL 61

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +              +L   S    D  K+     ++ +++   L  +S ++  + +R
Sbjct: 62  GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASISAKQQASEQR 118

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                   K++   L+        +  L      G+ +          F   SS      
Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           +  L  + +V+  S+E  + ++G+ D    R     N  LS  R       L+K GV+ +
Sbjct: 163 LPQLDNVAKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219

Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           RI+    F              +  +RR+ + ++  QG
Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256


>gi|301060006|ref|ZP_07200880.1| OmpA family protein [delta proteobacterium NaphS2]
 gi|300445885|gb|EFK09776.1| OmpA family protein [delta proteobacterium NaphS2]
          Length = 218

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 23/152 (15%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL--ISIIDQRNTPMFDKSSSIPLPETI 249
           + D  K ++  L+  +          E T   +   + ++ Q     F   SS+   + I
Sbjct: 83  MDDRKKDLTKALAPQINAG-------EVTLQVLKGNVILVTQTGETAFAPGSSVVKQDFI 135

Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +Q +  ++    ++ + I GH D +  +   +    L+  RA +   + +  G+S   
Sbjct: 136 STIQTVANIMKTYGKMTVDIIGHPDRTGTKTERQT---LADQRAEAVRTMFLGMGISPA- 191

Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           + + SG A+ +             R+++++  
Sbjct: 192 LVRSSGNANSQYLDG---------RVELVITP 214


>gi|291288745|ref|YP_003505561.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885905|gb|ADD69605.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 296

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKS--SSIPLPETIVVLQKIGEVLAHST----EVI 266
              +    + G ++ + +   T   D    S+    +   +   +GE     T     +I
Sbjct: 152 SHTIENIEKEGSVVVVFEANGTECADNGILSANLNEQG-AIYFALGEFRKELTDKEINII 210

Query: 267 S---------IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           S         I GHTD           DN+ LS  RA      L ++G+  + + +  G 
Sbjct: 211 SNANNAKKYVIIGHTDDVRVVPNTEYADNFELSAKRAAFFLNKLTEAGIPAENV-QTLGL 269

Query: 316 AHHRLKIASDPMN-SANRR 333
                   +       NRR
Sbjct: 270 GPAFPAAPNKKNGQPLNRR 288


>gi|254496226|ref|ZP_05109120.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella drancourtii LLAP12]
 gi|254354531|gb|EET13172.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Legionella drancourtii LLAP12]
          Length = 175

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F    S   P+ +  +    E L  H+   + + GHTD    R     N  L   RA +
Sbjct: 70  LFSYDDSNLNPKYLPSVNAQAEYLKSHAGARVLVAGHTDE---RGSREYNVALGERRANT 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335
              +L  +GVS  +I +I  +   R       +  +  NRR++
Sbjct: 127 VADILRMAGVSRQQI-RIVSYGKERPINLGHDEASHLQNRRVE 168


>gi|237798824|ref|ZP_04587285.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021677|gb|EGI01734.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 389

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + + 
Sbjct: 161 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLVL 220

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+  + G      + A+D    
Sbjct: 221 GHGDT---SGPTEANQKISQERAQSVAAIFRLSGLERNRL-SLRGMGAVMPRAANDSLQG 276

Query: 328 NSANRRIDILVEDR 341
            + NRR++IL+  +
Sbjct: 277 RALNRRVEILMTPQ 290


>gi|148652725|ref|YP_001279818.1| peptidoglycan-associated lipoprotein [Psychrobacter sp. PRwf-1]
 gi|148571809|gb|ABQ93868.1| Peptidoglycan-associated lipoprotein [Psychrobacter sp. PRwf-1]
          Length = 170

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     E   +L +    L+   +  + + GHTD    R  +  N  L   RA + 
Sbjct: 70  FAFDSYDIDAEAANILDEQVAFLSSHPDARVLVAGHTDE---RGSSEYNHALGERRAQAV 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
              L   G+ + R+  IS +   R   A   +   S NRR ++
Sbjct: 127 RSYLASKGIMDARVETIS-YGEDRPVAAGSDEASYSQNRRAEL 168


>gi|312270721|gb|ADQ55761.1| OmpA [Haemophilus parasuis]
 gi|312270723|gb|ADQ55762.1| OmpA [Haemophilus parasuis]
          Length = 366

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 246 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 302

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 303 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 361

Query: 342 Q 342
           +
Sbjct: 362 K 362


>gi|299773241|gb|ADJ38695.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773245|gb|ADJ38697.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|209968924|gb|ACJ02823.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|209968918|gb|ACJ02820.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968922|gb|ACJ02822.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714277|gb|ACN62133.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714281|gb|ACN62135.1| outer membrane protein A [Haemophilus parasuis]
          Length = 367

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|152971453|ref|YP_001336562.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956302|gb|ABR78332.1| iron-regulated membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 127

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           ++ +FDK+     P++   +  +   LA +      + GHTD          N  LSL R
Sbjct: 19  DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338
           A S        G    R + ++ G        ++D     + NRR+ +++
Sbjct: 76  ANSVADA-WAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 124


>gi|114778405|ref|ZP_01453252.1| outer membrane protein A precursor [Mariprofundus ferrooxydans
           PV-1]
 gi|114551368|gb|EAU53925.1| outer membrane protein A precursor [Mariprofundus ferrooxydans
           PV-1]
          Length = 360

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288
           D     +F  + S    E    L K  E L  ++   + + G+TD          N +LS
Sbjct: 236 DSSANSLFGFNRSTLRNEGKRALDKFVESLKGASFETMVVTGYTD--RIGTDEY-NQKLS 292

Query: 289 LDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNSAN---------RRIDI 336
             RA +    L+K  G+  D+I+   G          +     S N         RR+++
Sbjct: 293 ERRANAVRDYLVKFGGIPADKITA-RGAGESNPVTKREDCAGKSGNPLITCLAPDRRVEV 351

Query: 337 LV 338
            V
Sbjct: 352 EV 353


>gi|103488202|ref|YP_617763.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98978279|gb|ABF54430.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 294

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   +    L             +  + G+TD++        N  LS  RA + 
Sbjct: 183 FDVGKAVLSAQAKADLCATAAAAEAMDNALLLVVGYTDST---GSQEFNQMLSEKRAGAV 239

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
              L ++ G    R+   +G A       ++     + NRR+ + V   +G
Sbjct: 240 VNHLQQACGWKPYRMLTPTGMAEADPAADNETPEGKAQNRRVAVNVLVSKG 290


>gi|333029776|ref|ZP_08457837.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011]
 gi|332740373|gb|EGJ70855.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011]
          Length = 389

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    S      +V +Q + E +  + +   + G+ D++        N RLS  RA + 
Sbjct: 293 FFQIGKSNLTSRDLVTVQMMAESIKATDKTYKVVGYADSA--TGSKALNQRLSEARANAV 350

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              L+K GV E ++  + G          D   S   R+ I+
Sbjct: 351 KDALIKEGVKESQLE-VVGMGGVDSVFGKDNQLS---RVVIV 388


>gi|89052778|ref|YP_508229.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88862327|gb|ABD53204.1| phosphate ABC transporter substrate-binding protein, PhoT family
           [Jannaschia sp. CCS1]
          Length = 513

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPM----FDKSSSIPLP 246
             L  +    L G    N ++    +     +  ++ ++D          F+   +    
Sbjct: 357 NQLLTRTPLALQGERLSNAIRAAGEDVDLQELQTVMEVLDSAERLSTTLRFNAGGADLDI 416

Query: 247 ETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           ++   + ++   +   T     +   G +D      +   N RLSL RA      +M +G
Sbjct: 417 QSRASVGRLAAAIERGTFDGRQLIFAGFSDGDGPSTV---NARLSLRRADVVRDAVMAAG 473

Query: 304 VSE-DRISKIS-GFAHHRLKIASDP--MNSANRRIDILVE 339
           V+  DR+  ++ GF         D     + NRR+++ V+
Sbjct: 474 VAALDRVELVTVGFGEAMPMACDDTDWGRAVNRRVEVWVD 513


>gi|49182354|gb|AAT57679.1| OmpA [Pasteurella multocida]
          Length = 353

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
              L+  GV+++ IS  +G         +               + +RR++I V
Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAV 349


>gi|330955558|gb|EGH55818.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 265

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 105 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 164

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D    
Sbjct: 165 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 220

Query: 328 NSANRRIDIL 337
            + NRR++IL
Sbjct: 221 RALNRRVEIL 230


>gi|330828258|ref|YP_004391210.1| outer membrane protein A [Aeromonas veronii B565]
 gi|328803394|gb|AEB48593.1| Outer membrane protein A [Aeromonas veronii B565]
          Length = 345

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + +   PE    L  +   +  +     V ++ GHTD     + A  N +LS  RA
Sbjct: 226 LFDFNKATLKPEASQALDSLYSQIEEARPKDGVATVIGHTD--RIGSDAY-NQKLSEQRA 282

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G+   +I+ + G          
Sbjct: 283 QTVANYLVGKGIPAAKIN-VEGRGKSSPVTGD 313


>gi|296159971|ref|ZP_06842791.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295889717|gb|EFG69515.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 215

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPGGKEKLDDLASKIGALNLEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|148262285|ref|YP_001228991.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146395785|gb|ABQ24418.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4]
          Length = 194

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +    +  +L    + +L      + I GH D    R     N  L   RA SA
Sbjct: 92  FDFDSFVLTQTSRDILSNNAKWLLKTGRAKVQIEGHCDE---RGSDEYNLALGEKRAKSA 148

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
              L+  GV  D++S IS +   +      ++   + NRR + ++
Sbjct: 149 MNYLVTLGVPADQLSVIS-YGKEKPADPGHNEAAWAKNRRAEFVI 192


>gi|294139759|ref|YP_003555737.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293326228|dbj|BAJ00959.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 361

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273
           V  ETT    + SI        F  +SS    E+   ++K+   +  + +  + I GH  
Sbjct: 235 VYTETTEQRDVGSIQ-------FANNSSAVKTESFERIEKLATYMNTNPKSTVLISGHAS 287

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSA 330
                  A  N  LS  RA +  ++L++  G+S+DR+    GF   +  I   S   N A
Sbjct: 288 NV---GKADYNMILSDKRAKAVAKILVEKFGISQDRVEA-KGFGVTQPIIQGRSVEANKA 343

Query: 331 NRRID 335
           NRRI+
Sbjct: 344 NRRIE 348


>gi|292487869|ref|YP_003530744.1| outer membrane protein A [Erwinia amylovora CFBP1430]
 gi|292899094|ref|YP_003538463.1| outer membrane protein A [Erwinia amylovora ATCC 49946]
 gi|291198942|emb|CBJ46052.1| outer membrane protein A [Erwinia amylovora ATCC 49946]
 gi|291553291|emb|CBA20336.1| Outer membrane protein A precursor [Erwinia amylovora CFBP1430]
 gi|312171991|emb|CBX80248.1| Outer membrane protein A precursor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 355

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L++       + + G+TD     +    N +LS
Sbjct: 227 KSDVLFTFNKSTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  ++IS         ++G           L     P     RR+
Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISARGEGKSNPVTGNTCDSVKGRKALIDCLAPD----RRV 339

Query: 335 DILVE 339
           +I V+
Sbjct: 340 EIQVK 344


>gi|167586522|ref|ZP_02378910.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu]
          Length = 223

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKATLKPLGKQKLDDLAGKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  G+  ++I    G             N  N           RR+++ V 
Sbjct: 154 RAQAVKSYLVSKGIPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 210

Query: 340 DRQ 342
             Q
Sbjct: 211 GTQ 213


>gi|37704654|gb|AAR01599.1| OprF [Pseudomonas sp. MFY143]
          Length = 297

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   ++   + +  ++ + + +        ++ G+TD+         N +LS  RA S 
Sbjct: 215 FDFDKAVVKSQYLPDIKNVAQFMQQYPATSTTVNGYTDSV---GTDAYNLKLSQRRADSV 271

Query: 296 YQVLMKSGVSEDRISKIS-GFAHH 318
            Q L++ GVS  R+  +  G A  
Sbjct: 272 RQALVQQGVSACRVDAVGHGKADP 295


>gi|319641322|ref|ZP_07996019.1| outer membrane protein [Bacteroides sp. 3_1_40A]
 gi|317387068|gb|EFV67950.1| outer membrane protein [Bacteroides sp. 3_1_40A]
          Length = 474

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V       + + G  D+S   +   D+  LS  RA  
Sbjct: 377 FFTLNTARLTDVSQKLNLDELARVAKKYDLHVRVTGAADSSTGTSGINDS--LSQSRADF 434

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+  +RI+KIS  G A H+   A+
Sbjct: 435 IVSELKQRGIPAERITKISRGGIADHQPTEAN 466


>gi|157373221|ref|YP_001471821.1| hypothetical protein Ssed_0080 [Shewanella sediminis HAW-EB3]
 gi|157315595|gb|ABV34693.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 304

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  +S       V L+ I + +    + + I +  H DA         N  LS +RA  
Sbjct: 183 FESGTSKLTAAHEVDLEAIAQYVQADATVKEILVDAHADA---SGEHLANLVLSKERADE 239

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336
               L + G+ + +I ++         ++++       NRR+ I
Sbjct: 240 VASRLFELGIQKQKI-QVRHHGARSPIVSNNSPEGREINRRVTI 282


>gi|91784820|ref|YP_560026.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|91688774|gb|ABE31974.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 215

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +I  P     L  +   +      + +  G+TD     +   ++ RLSL 
Sbjct: 97  QADALFDFDKAILKPGGKEKLDDLASKIGSLNLEVVVATGYTD--RIGSDKYND-RLSLR 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338
           RA +    L+  G+  +RI    G             N  N           RR+++ V
Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209


>gi|271501514|ref|YP_003334540.1| OmpA domain-containing protein transmembrane region-containing
           protein [Dickeya dadantii Ech586]
 gi|270345069|gb|ACZ77834.1| OmpA domain protein transmembrane region-containing protein
           [Dickeya dadantii Ech586]
          Length = 354

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L+        + + G TD        + N  LS
Sbjct: 226 KSDVLFNFNKATLKPEGQRSLDQLYTQLSTLDPKDGSVVVLGFTDRL---GSDQYNQTLS 282

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337
             RA +    L+  G+  ++IS   G            A+    +A       +RR++I 
Sbjct: 283 AKRAQTVVDYLVHKGIPSNKISA-RGMGKANPVTGSTCANVKARAALIECLSPDRRVEIE 341

Query: 338 VE 339
           V+
Sbjct: 342 VK 343


>gi|221134028|ref|ZP_03560333.1| outer membrane protein [Glaciecola sp. HTCC2999]
          Length = 249

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
                +  + L  +V + +++ V + TT +  +    + ++   F    S         L
Sbjct: 98  HQTQAQTIAQLQQMVDEPVIQQVNY-TTPS--VFDFPEMQSHIQFTTGISEVASAYHGQL 154

Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             + +VL       +++ G  D    R    DN  LS  R  +   +L+K GVSED+I  
Sbjct: 155 ALLAQVLTKQPQLQVTLTGFAD---LRGTDDDNLALSSARVAAVKSMLVKEGVSEDQIKT 211

Query: 312 ISGFAHHRLKIAS--DPMNSANRRIDI 336
           I+     R    S  D     +RR+ I
Sbjct: 212 IA-LGEARALQTSNWDESLVFDRRVTI 237


>gi|238789280|ref|ZP_04633067.1| Outer membrane protein A [Yersinia frederiksenii ATCC 33641]
 gi|238722612|gb|EEQ14265.1| Outer membrane protein A [Yersinia frederiksenii ATCC 33641]
          Length = 357

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++I+   G         +      P  +       +RR++I 
Sbjct: 286 QRRADSVRDYLVSKGIPAEKITA-RGEGQANPVTGNTCDNVKPRAALIDCLAPDRRVEIE 344

Query: 338 VE 339
           V+
Sbjct: 345 VK 346


>gi|258650298|ref|YP_003199454.1| OmpA/MotB domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258553523|gb|ACV76465.1| OmpA/MotB domain protein [Nakamurella multipartita DSM 44233]
          Length = 378

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F  + +  + +    L  + E +        IS+ G T A P  +       LS  RA 
Sbjct: 273 LFLPNQAALIDKA-ATLTALSECVGTVDPSTKISVEGRTAAVPGGDPQ-GAIDLSTQRAT 330

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
               +L + GV  + I+ + G       +     +  NR
Sbjct: 331 EVAVLLQEVGVPGENITSVVGLGDSSPLVQP-ASDPENR 368


>gi|255527288|ref|ZP_05394168.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|255509026|gb|EET85386.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
          Length = 107

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          +KKK   +    N   W + Y+DFMT+LM  F+V++ ++  D      + Q  +
Sbjct: 1  MKKKKQEEHE--NSERWLLSYSDFMTLLMILFVVLYAMSNVDKAKFSQLSQSMS 52


>gi|109390002|gb|ABG29730.1| OmpA [Riemerella anatipestifer]
          Length = 255

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 145 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 201

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 202 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 243


>gi|16273088|ref|NP_439322.1| outer membrane protein P5 [Haemophilus influenzae Rd KW20]
 gi|1171899|sp|P43840|OMP51_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; Flags:
           Precursor
 gi|1574091|gb|AAC22819.1| outer membrane protein P5 (ompA) [Haemophilus influenzae Rd KW20]
          Length = 353

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
               +  GV+ D IS  +G+        +  D +            +RR++I V
Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACFAPDRRVEIAV 349


>gi|294085867|ref|YP_003552627.1| peptidoglycan-associated lipoprotein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665442|gb|ADE40543.1| Peptidoglycan-associated lipoprotein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 186

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           NT  FD  S++   +  V L +    L  + E V+ I GH D    R     N  L   R
Sbjct: 81  NTVYFDFDSAVLSYDAQVTLSRQSAFLQLNPEAVVVIEGHCDE---RGTREYNLALGDRR 137

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A +A   L+  G+   RI  +S G     +  +++   + NRR
Sbjct: 138 ASAARDFLLAKGIDAARIRTVSYGKERPAMLGSNEESWAKNRR 180


>gi|57168163|ref|ZP_00367302.1| probable periplasmic protein Cj0599 [Campylobacter coli RM2228]
 gi|57020537|gb|EAL57206.1| probable periplasmic protein Cj0599 [Campylobacter coli RM2228]
          Length = 316

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 106/332 (31%), Gaps = 56/332 (16%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTA 79
            +       W I YAD M  L+  F+++     +         + I+   N     L   
Sbjct: 2   KNEQEEGNFW-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLREIKDNLNKQEARL--- 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                 E++  E  ++  I   +   +   S  L                N+     ++ 
Sbjct: 58  ------EESKEELRNKEAIVFKLSSDLNNASSAL----------------NLINSQKAEL 95

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
             +  N      E    +         +  +       +   +    K K+++Q+L+  I
Sbjct: 96  EANITNYEQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLS-LI 154

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--- 256
              LS  +   +   +  +       IS+    +  +FDK S     E    L+KI    
Sbjct: 155 RENLSKELQAKLDSNITIDQKTG--SISL---PSEVLFDKDSYTLKNEAKASLRKILSEY 209

Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-- 306
                   ++L++    I I GHTD+         N  LS  RAY     +         
Sbjct: 210 FNAIINDPKILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKDTRL 265

Query: 307 DRISKISG--FAHHRLKIASDPMNSANRRIDI 336
            ++   SG  F+   L    +  + + RRI+I
Sbjct: 266 QKLLMASGRSFSDPVLVNGVEDKDKS-RRIEI 296


>gi|51595793|ref|YP_069984.1| outer membrane protein A [Yersinia pseudotuberculosis IP 32953]
 gi|108806724|ref|YP_650640.1| outer membrane protein A [Yersinia pestis Antiqua]
 gi|108812705|ref|YP_648472.1| outer membrane protein A [Yersinia pestis Nepal516]
 gi|145598823|ref|YP_001162899.1| outer membrane protein A [Yersinia pestis Pestoides F]
 gi|149366590|ref|ZP_01888624.1| putative outer membrane porin A protein [Yersinia pestis CA88-4125]
 gi|162418551|ref|YP_001607555.1| outer membrane protein A [Yersinia pestis Angola]
 gi|165924613|ref|ZP_02220445.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165940134|ref|ZP_02228667.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011945|ref|ZP_02232843.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211728|ref|ZP_02237763.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402334|ref|ZP_02307802.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419876|ref|ZP_02311629.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424140|ref|ZP_02315893.1| outer membrane protein A [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024855|ref|YP_001721360.1| outer membrane protein A [Yersinia pseudotuberculosis YPIII]
 gi|186894876|ref|YP_001871988.1| outer membrane protein A [Yersinia pseudotuberculosis PB1/+]
 gi|218928581|ref|YP_002346456.1| outer membrane protein A [Yersinia pestis CO92]
 gi|229841410|ref|ZP_04461569.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843520|ref|ZP_04463663.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229894379|ref|ZP_04509562.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis Pestoides A]
 gi|270486903|ref|ZP_06203977.1| outer membrane protein A [Yersinia pestis KIM D27]
 gi|294503419|ref|YP_003567481.1| putative outer membrane porin A protein [Yersinia pestis Z176003]
 gi|55976558|sp|Q8ZG77|OMPA_YERPE RecName: Full=Outer membrane protein A; Flags: Precursor
 gi|55977792|sp|P38399|OMPA_YERPS RecName: Full=Outer membrane protein A; AltName: Full=Outer
           membrane protein II; Flags: Precursor
 gi|51589075|emb|CAH20693.1| putative outer membrane porin A protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776353|gb|ABG18872.1| outer membrane porin A protein [Yersinia pestis Nepal516]
 gi|108778637|gb|ABG12695.1| putative outer membrane porin A protein [Yersinia pestis Antiqua]
 gi|115347192|emb|CAL20086.1| putative outer membrane porin A protein [Yersinia pestis CO92]
 gi|145210519|gb|ABP39926.1| outer membrane porin A protein [Yersinia pestis Pestoides F]
 gi|149290964|gb|EDM41039.1| putative outer membrane porin A protein [Yersinia pestis CA88-4125]
 gi|162351366|gb|ABX85314.1| outer membrane protein A [Yersinia pestis Angola]
 gi|165911957|gb|EDR30601.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923673|gb|EDR40805.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989112|gb|EDR41413.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207499|gb|EDR51979.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962617|gb|EDR58638.1| outer membrane protein A [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048300|gb|EDR59708.1| outer membrane protein A [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056989|gb|EDR66752.1| outer membrane protein A [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751389|gb|ACA68907.1| OmpA domain protein transmembrane region-containing protein
           [Yersinia pseudotuberculosis YPIII]
 gi|186697902|gb|ACC88531.1| OmpA domain protein transmembrane region-containing protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|229689128|gb|EEO81191.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697776|gb|EEO87823.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229703777|gb|EEO90793.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis Pestoides A]
 gi|262361462|gb|ACY58183.1| putative outer membrane porin A protein [Yersinia pestis D106004]
 gi|262365389|gb|ACY61946.1| putative outer membrane porin A protein [Yersinia pestis D182038]
 gi|270335407|gb|EFA46184.1| outer membrane protein A [Yersinia pestis KIM D27]
 gi|294353878|gb|ADE64219.1| putative outer membrane porin A protein [Yersinia pestis Z176003]
 gi|320015699|gb|ADV99270.1| outer membrane protein A [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 353

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279
           I+D +     +  +F  + +   PE    L ++   L+        + + G  D      
Sbjct: 216 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 272

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330
               N  LS  RA S    L+  G+  D+I+   G         +      P  +     
Sbjct: 273 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 331

Query: 331 --NRRIDILVE 339
             +RR++I V+
Sbjct: 332 APDRRVEIEVK 342


>gi|329902808|ref|ZP_08273256.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548603|gb|EGF33260.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 392

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +         L  +           +S+ G+TD        + N  LS  RA + 
Sbjct: 281 FAFGQATLTAAGKTQLDMLITAANAGGYGSVSVDGYTDQI---GSDKVNLALSTARATTI 337

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----------ASDPMNSANRRIDILV 338
              L+  G+S  +I + +G     LK+           A     + NRR+D+ +
Sbjct: 338 RDYLLAHGLSALQI-RATGHGATSLKVELAQCAGSTGAALQTCLAPNRRVDVTL 390


>gi|302536573|ref|ZP_07288915.1| type VI secretion system OmpA/MotB [Streptomyces sp. C]
 gi|302445468|gb|EFL17284.1| type VI secretion system OmpA/MotB [Streptomyces sp. C]
          Length = 212

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263
             V +++      + T   +++++   ++  +F ++S++   +    +Q I + +     
Sbjct: 76  AEVVEDLGGEQRRQETNQNVMMAL---QSEVLFPENSAVFNAQAASRIQAIAQEINTQKA 132

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321
             I + G TD             LS  RA +    L K+  +      + G++       
Sbjct: 133 TRIRVFGFTDDQ---GSYEHGKELSKQRADAVQAELAKTVTNPAVTYDVRGYSEDYPIAD 189

Query: 322 IASDPMNSANRRIDI 336
            +++     NRR++I
Sbjct: 190 NSTEEGRKKNRRVEI 204


>gi|237800676|ref|ZP_04589137.1| OmpA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023535|gb|EGI03592.1| OmpA family protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 446

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L       + +++ G  DA   P R        LS  R
Sbjct: 345 FAQGSARLDNKAQQDLKRVADYLKAQDKLDQHVTLVGFGDAKSDPARATL-----LSRLR 399

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+     +I G         +  D     NRR+++ V+
Sbjct: 400 AMAVRRELLKSGVT---FREILGLGDEMPVANNDIDDGRIKNRRVEVWVQ 446


>gi|71906104|ref|YP_283691.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71845725|gb|AAZ45221.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 217

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPF 277
              +G  I++       +FD + ++  P     L ++          + +  GHTD    
Sbjct: 89  VKPSGEKITVAAD---ALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTD--RI 143

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA------ 330
            + +  N +LS  RA +  + L+  G+  +R+    G    +         N+       
Sbjct: 144 GSDSY-NQKLSEKRAAAVKEYLVAKGIEANRVY-TEGKGEKQPVTGDKCKGNAKTKALID 201

Query: 331 ----NRRIDILV 338
               +RR+DI V
Sbjct: 202 CLQPDRRVDIEV 213


>gi|71906867|ref|YP_284454.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71846488|gb|AAZ45984.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 219

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPF 277
              +G  I++       +FD + ++  P     L ++          + +  GHTD    
Sbjct: 91  VKPSGEKITVAAD---ALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTD--RI 145

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA------ 330
            + +  N +LS  RA +  + L+  G+  +R+    G    +         N+       
Sbjct: 146 GSDSY-NQKLSEKRAAAVKEYLVAKGIEANRVY-TEGKGEKQPVTGDKCKGNAKTKALID 203

Query: 331 ----NRRIDILV 338
               +RR+DI V
Sbjct: 204 CLQPDRRVDIEV 215


>gi|312892475|ref|ZP_07751968.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295055|gb|EFQ72231.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 724

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 91/302 (30%), Gaps = 38/302 (12%)

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QYQ 125
           YF+  G   +     IF       R   +  +L    + + +   L              
Sbjct: 410 YFSSTGHPGL-GGLDIFKVTLKGPRPINSPANLGAPVNSSVDDFGLIRSEDGASGFFSSN 468

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R  ++  Y    Q        L  D++ G+ +  S    +S N             K L 
Sbjct: 469 RRGSDDIYGFTYQPFNLALKGLVVDADSGQPIPNSYVAIRSKNNISLKTNAQGGFSKSLN 528

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-------------IIDQR 232
            +    L       S+    +    IV       T   + IS             I+   
Sbjct: 529 KETDYSLSATKDGYSTDEGTVTTKGIVSDTTLTIT---LRISKKAQDQQFDGPKKILCDS 585

Query: 233 NTPMFDKSS-------SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
              +F           S   P+    L  +  +L       + +  H D     +I   N
Sbjct: 586 LRELFSIGKIYYDLDKSFIRPDAEGALNHLINLLNSYPGLKVIVASHCDTR--ASIDY-N 642

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337
             LS  R+ SA   L+  GVSE+RI ++  F   RL          ++  +  NRR + +
Sbjct: 643 IGLSQRRSLSARAYLLAHGVSENRI-QMEYFGKSRLANKCADGVPCTEADHQLNRRTEFV 701

Query: 338 VE 339
           + 
Sbjct: 702 LL 703


>gi|305431690|ref|ZP_07400859.1| chemotaxis protein MotB [Campylobacter coli JV20]
 gi|304445285|gb|EFM37929.1| chemotaxis protein MotB [Campylobacter coli JV20]
          Length = 316

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 107/332 (32%), Gaps = 56/332 (16%)

Query: 24  DDTPNNLGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTA 79
            +       W I YAD M  L+  F+++     +         + I+   N     L   
Sbjct: 2   KNEQEEGNFW-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLREIKDNLNKQEARL--- 57

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                 E++  E  ++  I   +   +   S  L                N+     ++ 
Sbjct: 58  ------EESKEELRNKEAIVFKLSSDLNNASSAL----------------NLINSQKAEL 95

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
             +  N      E    +         +  +       +   +    K K+++Q+L+  I
Sbjct: 96  EANITNYEQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLS-LI 154

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--- 256
              LS  +   +   +  +       IS+    +  +FDK S     E    L+KI    
Sbjct: 155 RENLSKELQAKLDSNITIDQKTG--SISL---PSEVLFDKDSYTLKNEAKASLRKILSEY 209

Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK--SGVSE 306
                   ++L++    I I GHTD+         N  LS  RAY     +      +  
Sbjct: 210 FNAIINDPKILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKDIRL 265

Query: 307 DRISKISG--FAHHRLKIASDPMNSANRRIDI 336
            ++   SG  F+   L    +  + + RRI+I
Sbjct: 266 QKLLMASGRSFSDPVLVNGVEDKDKS-RRIEI 296


>gi|85706710|ref|ZP_01037802.1| peptidoglycan-associated lipoprotein [Roseovarius sp. 217]
 gi|85668768|gb|EAQ23637.1| peptidoglycan-associated lipoprotein [Roseovarius sp. 217]
          Length = 170

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSL 289
           +  +F+             L      L   T       I GH D          N  L  
Sbjct: 60  DRVLFEVDQPTLNATAQSTLDGQANWL--MTNRDFTAVIEGHADEQ---GTREYNLALGA 114

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            RA +  + L+  GV+ +R+ ++  F   R     +++   + NRR
Sbjct: 115 RRANAVQEYLITQGVAPNRL-RVVSFGKERPIEICSNEACYTKNRR 159


>gi|325518447|gb|EGC98149.1| OOP family OmpA-OmpF porin [Burkholderia sp. TJI49]
          Length = 207

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 81  QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 137

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV  ++I    G             N  N           RR+++ V 
Sbjct: 138 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 194

Query: 340 DRQ 342
             Q
Sbjct: 195 GTQ 197


>gi|296534564|ref|ZP_06896978.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957]
 gi|296265104|gb|EFH11315.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957]
          Length = 97

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           +        ++ +  +      T  I + GH D        + N RLS  RA +    L+
Sbjct: 1   ADLTDRARQIISEAAQNSGRVQTTRIEVAGHADR---AGSPQYNQRLSQRRADAVAAELV 57

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           + GV+   I  +  F   R  + +        NRR++I++
Sbjct: 58  RLGVARSAI-SVQAFGESRPLVPTADGVREPQNRRVEIVL 96


>gi|90411166|ref|ZP_01219179.1| putative outer membrane protein [Photobacterium profundum 3TCK]
 gi|90328012|gb|EAS44333.1| putative outer membrane protein [Photobacterium profundum 3TCK]
          Length = 196

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           +     +F   S+      +  +Q++ + L    E  I ++G+  ASP  N    N  LS
Sbjct: 70  ENDVRVLFANDSTAIPEAFLSEIQRMADFLDVYPEAYIELKGY--ASPVGNSEY-NIGLS 126

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
             RA    + L+  GV+  RI  I GF       A  S+  N+ +RR+
Sbjct: 127 KRRATKVREQLIAEGVAPQRIKTI-GFGDAEPIAAESSEATNTLSRRV 173


>gi|66045711|ref|YP_235552.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
 gi|63256418|gb|AAY37514.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a]
          Length = 447

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L         +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+K GV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKRGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|297184084|gb|ADI20203.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 863

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD + S    E+ V L  +  +L  +  + I +R HTD   +R+    N  LS  RA S
Sbjct: 599 FFDLAQSELREESKVALDTVFSILQRNPTITIGLRSHTD---YRDTDAKNDVLSQARAQS 655

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI 322
               L++ G++ +R++ + G       +
Sbjct: 656 CVDYLIQKGITAERLTAV-GMGEKEPFV 682


>gi|332519351|ref|ZP_08395818.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045199|gb|EGI81392.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 636

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 24/291 (8%)

Query: 68  YFNPFGKNLMTASKGI----FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           YF+  G   +           D +  P R+    ++ + D+     + +   G  +  ++
Sbjct: 347 YFSSIGHLGLGGMDVFYTKEIDGKMAPVRNVGIPVNSNGDDFAFHINEETGEGFVSSNRE 406

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE----ENYFLPPLS 179
             + +++I+ +   Q         T    K K            +K              
Sbjct: 407 GGKGDDDIYQIKKIQPLCDVLIVATIVDNKTKAPIAGASASLVDSKGNVLSTKTTNAEGK 466

Query: 180 KEKILAMKRKKRLQDLAKKISS---TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            E I+       LQ   +   S    ++G   + +   +  +      +I + +    P+
Sbjct: 467 VEYIVECDTDTELQVTMQDYESNKLAIAGDDVEEVAVELALDPIEK--IIEVEEVVLRPI 524

Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    +    L  + +V+    + VI    HTD    R   + N  LS  RA +
Sbjct: 525 YFDYDKSNITAKAAFELDNLVQVMNKYPDMVIYATSHTD---IRASNKYNDALSDRRAKT 581

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340
             Q ++  G+   RIS  +G     L +      ++  +  NRR +  +  
Sbjct: 582 TVQYIISKGIDATRISG-AGKGERELAVDCGTNCTEEQHQLNRRSEFKILS 631


>gi|332520148|ref|ZP_08396612.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044707|gb|EGI80901.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 636

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 24/291 (8%)

Query: 68  YFNPFGKNLMTASKGI----FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
           YF+  G   +           D +  P R+    ++ + D+     + +   G  +  ++
Sbjct: 347 YFSSIGHLGLGGMDVFYTKEIDGKMAPVRNVGIPVNSNGDDFAFHINEETGEGFVSSNRE 406

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE----ENYFLPPLS 179
             + +++I+ +   Q         T    K K            +K              
Sbjct: 407 GGKGDDDIYQIKKIQPLCDVLIVATIVDNKTKAPIAGASASLVDSKGNVLSTKTTNAEGK 466

Query: 180 KEKILAMKRKKRLQDLAKKISS---TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            E I+       LQ   +   S    ++G   + +   +  +      +I + +    P+
Sbjct: 467 VEYIVECDTDTELQVTMQDYESNKLAIAGDDVEEVAVELALDPIEK--IIEVEEVVLRPI 524

Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    +    L  + +V+    + VI    HTD    R   + N  LS  RA +
Sbjct: 525 YFDYDKSNITAKAAFELDNLVQVMNKYPDMVIYATSHTD---IRASNKYNDALSDRRAKT 581

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340
             Q ++  G+   RIS  +G     L +      ++  +  NRR +  +  
Sbjct: 582 TVQYIISKGIDATRISG-AGKGERELAVDCGTNCTEEQHQLNRRSEFKILS 631


>gi|194290406|ref|YP_002006313.1| colicin transport component, peptidoglycan-associated outer
           membrane lipoprotein [Cupriavidus taiwanensis LMG 19424]
 gi|193224241|emb|CAQ70250.1| colicin transport component, peptidoglycan-associated outer
           membrane lipoprotein [Cupriavidus taiwanensis LMG 19424]
          Length = 169

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   +L    + L  +    I I+G+TD    R  +  N  L   RA + 
Sbjct: 69  FDFDSYTVKPDYQGMLGAHAKYLGTNQGRKILIQGNTDE---RGTSEYNLALGQKRAEAV 125

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            + L   GV + ++  +S G    +     +   + NRR DI
Sbjct: 126 RRSLASMGVPDSQMEAVSLGKEKPKATGHDEASWAENRRADI 167


>gi|197106554|ref|YP_002131931.1| OmpA family protein [Phenylobacterium zucineum HLK1]
 gi|196479974|gb|ACG79502.1| OmpA family protein [Phenylobacterium zucineum HLK1]
          Length = 186

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD        +   +L    E L       + I G+ D    R     N  L   R
Sbjct: 76  DRVYFDLDQHDVRTDARPLLDAQAEWLRRYPQVRVRIEGNADE---RGTREYNLALGARR 132

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANR--RIDILVEDRQ 342
           A S    L+  GV+ DRIS IS F   +         +   NR  R  I+   RQ
Sbjct: 133 ANSVRDYLVNRGVTSDRISTIS-FGKEQPLDPGTTEEAYQKNRNARTAIVSGARQ 186


>gi|126641083|ref|YP_001084067.1| putative antigen [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283
           I D+  + +F  D+  +  + E    + KI E +  S     I + G TD  P    +  
Sbjct: 56  IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 112

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPM-----NSANRRID 335
           N  LS  RA +  ++L++ GV   RI +I   +   +     +++        + NRR++
Sbjct: 113 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSSNNSSQLIQCLAPNRRVN 171

Query: 336 I 336
           I
Sbjct: 172 I 172


>gi|84514866|ref|ZP_01002229.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
 gi|84511025|gb|EAQ07479.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
          Length = 531

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 217 FETTRTGIL--ISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLA--HSTEV-IS 267
            E T   +     ++   +       F   SS         + ++  ++A    +   + 
Sbjct: 391 VEVTLRQLRDMTQLLTAADRSSITFRFALGSSRLDARAQDDILRLANLIATSDISNKELL 450

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSEDRI-SKISGFAHHRLKIAS 324
           + G+TDA         N  LS  RA    Q L  +   ++ D +  +  GF        +
Sbjct: 451 LIGYTDAI---GDGASNLALSQQRAEEVRQALFAVAPSLASDDLPVRALGFGEISPLSCN 507

Query: 325 DPMNSA--NRRIDILVED 340
           +  N    NRR+++ + D
Sbjct: 508 ETANGRRINRRVEVWLRD 525


>gi|28869933|ref|NP_792552.1| OmpA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853178|gb|AAO56247.1| OmpA family protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 451

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 350 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 404

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 405 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 451


>gi|330965346|gb|EGH65606.1| OmpA family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 451

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 350 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 404

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 405 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 451


>gi|301162664|emb|CBW22211.1| putative outer membrane protein [Bacteroides fragilis 638R]
          Length = 366

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 214 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 273

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    I G+ D +     A+ N +LS  RA + Y  
Sbjct: 274 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 331

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 332 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 365


>gi|265763060|ref|ZP_06091628.1| outer membrane porin F [Bacteroides sp. 2_1_16]
 gi|263255668|gb|EEZ27014.1| outer membrane porin F [Bacteroides sp. 2_1_16]
          Length = 373

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    I G+ D +     A+ N +LS  RA + Y  
Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372


>gi|253563059|ref|ZP_04840516.1| outer membrane porin F [Bacteroides sp. 3_2_5]
 gi|251946835|gb|EES87117.1| outer membrane porin F [Bacteroides sp. 3_2_5]
          Length = 373

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    I G+ D +     A+ N +LS  RA + Y  
Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372


>gi|53712963|ref|YP_098955.1| outer membrane porin F [Bacteroides fragilis YCH46]
 gi|52215828|dbj|BAD48421.1| outer membrane porin F precursor [Bacteroides fragilis YCH46]
          Length = 373

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    I G+ D +     A+ N +LS  RA + Y  
Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372


>gi|323436025|ref|ZP_01049805.2| peptidoglycan-associated lipoprotein [Dokdonia donghaensis MED134]
 gi|321496340|gb|EAQ39777.2| peptidoglycan-associated lipoprotein [Dokdonia donghaensis MED134]
          Length = 306

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           + ++S     +    L  I   L       I++ GHTD+         N RL L+RA   
Sbjct: 205 YSEASVNLNAQQRKKLGNITRYLDKVEGSSITVEGHTDSQ---GSMATNDRLGLERAEFG 261

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            Q L  +G++  +I  ++          +D       NRR  I +
Sbjct: 262 KQYLQNNGIAGAKIKTVT-KGERNPIATNDTEEGRTQNRRAVITI 305



 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 242 SIPLPETIVVLQKIGEV-----LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +I  P    V   I ++        +    ++I G+ D+    N A  N  L L RA + 
Sbjct: 76  AIITPVAGDVNNGIAKLKGYFDAEGNDNKMVNITGYYDSDEVNNSAYAN--LGLARATAV 133

Query: 296 YQVLMKSGVSEDRI 309
               +  G+S  RI
Sbjct: 134 KNYFVDQGISSSRI 147


>gi|260574834|ref|ZP_05842836.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259022839|gb|EEW26133.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 190

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F   S+         L +  +         +I GHTD+   R     N RLS  RA S 
Sbjct: 91  LFATDSATLTAHGRSFLTQFFQQAGAFGY--AIYGHTDS---RASDEYNMRLSQRRAASV 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             +    G     + +  GF   +   ++   +    NRR++++
Sbjct: 146 ANIARSVGAV---VEREIGFGERQPIASNGSASGMQQNRRVEVV 186


>gi|171463937|ref|YP_001798050.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193475|gb|ACB44436.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 188

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           ++D + S   PE    L KI   L      + I  G+TD+         N  L   RA S
Sbjct: 81  LYDFNKSDLKPEGKATLDKIAADLKKIKLEVIITVGNTDSV---GTDAYNMALGQRRAQS 137

Query: 295 AYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338
               L+   V   RI  +  G ++     A+    + NRR DI V
Sbjct: 138 VKTYLVSKDVDGSRIYTESKGKSNPVASNATAEGRAKNRRTDIEV 182


>gi|121600552|ref|YP_992694.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124384797|ref|YP_001026510.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126450730|ref|YP_001080211.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|167002004|ref|ZP_02267794.1| OmpA family protein [Burkholderia mallei PRL-20]
 gi|238562245|ref|ZP_00440713.2| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|254177630|ref|ZP_04884285.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|254199515|ref|ZP_04905881.1| OmpA family protein [Burkholderia mallei FMH]
 gi|254205830|ref|ZP_04912182.1| OmpA family protein [Burkholderia mallei JHU]
 gi|254358770|ref|ZP_04975043.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|121229362|gb|ABM51880.1| ompA family protein [Burkholderia mallei SAVP1]
 gi|124292817|gb|ABN02086.1| ompA family protein [Burkholderia mallei NCTC 10229]
 gi|126243600|gb|ABO06693.1| ompA family protein [Burkholderia mallei NCTC 10247]
 gi|147749111|gb|EDK56185.1| OmpA family protein [Burkholderia mallei FMH]
 gi|147753273|gb|EDK60338.1| OmpA family protein [Burkholderia mallei JHU]
 gi|148027897|gb|EDK85918.1| OmpA family protein [Burkholderia mallei 2002721280]
 gi|160698669|gb|EDP88639.1| ompA family protein [Burkholderia mallei ATCC 10399]
 gi|238522977|gb|EEP86418.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|243062249|gb|EES44435.1| OmpA family protein [Burkholderia mallei PRL-20]
          Length = 236

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           MF      ++    +    L ++ + L     + +SI G+TD          N +LS  R
Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337
           A +    L+ +GV  D +    G       +  D    A        NRR++++
Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLSPNRRVEVV 229


>gi|307302740|ref|ZP_07582496.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
 gi|306903104|gb|EFN33695.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C]
          Length = 633

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V + + +VL         I GHTDA       + N  LS +R
Sbjct: 519 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 575

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  G+  + +    G+    LKI +D     NRR+ I
Sbjct: 576 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 620


>gi|301062462|ref|ZP_07203113.1| putative peptidoglycan-associated lipoprotein [delta
           proteobacterium NaphS2]
 gi|300443436|gb|EFK07550.1| putative peptidoglycan-associated lipoprotein [delta
           proteobacterium NaphS2]
          Length = 103

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   PE   +L+   + L A+ +  + I G+ D    R     N  L   RA SA
Sbjct: 1   FDFDRSNLKPEAQEILRDKADFLRANRSYSVLIAGNCDD---RGTEEYNLALGERRAMSA 57

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRR 333
            + L+  G+S DRI  IS +   R     ++P+  + NRR
Sbjct: 58  KKFLVALGISPDRIKTIS-YGELRPADPANNPVAWALNRR 96


>gi|262274549|ref|ZP_06052360.1| sodium-type flagellar protein MotY precursor [Grimontia hollisae
           CIP 101886]
 gi|262221112|gb|EEY72426.1| sodium-type flagellar protein MotY precursor [Grimontia hollisae
           CIP 101886]
          Length = 292

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++ +     ++  L +I E + +S ++  + +  +TD    R     N RLS  RA  
Sbjct: 186 YDENGAELNKASMARLAQIAEFVRYSPDIDLVLMATYTDN---RGAKVANQRLSEIRAQK 242

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                M  G+ +DRI ++  +   R    ++     + NRR+ I +
Sbjct: 243 LEAYFMSLGLPKDRI-QVEAYGERRPIAENESPIGRNKNRRVVISL 287


>gi|29346911|ref|NP_810414.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338809|gb|AAO76608.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 363

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284
           + I   +    F  +S+    +    +  + E L  ++T  +S+ G+ D       AR N
Sbjct: 255 VVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKG--TGNARIN 312

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +LS  RA +  + L   G++ DRI+ ++          +        R+ I +
Sbjct: 313 SKLSEKRANNVVEALKAKGIAADRIT-VAYKGDTVQPYNT----PEENRVSICI 361


>gi|332162167|ref|YP_004298744.1| outer membrane protein A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606220|emb|CBY27718.1| outer membrane protein A precursor [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666397|gb|ADZ43041.1| outer membrane protein A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 357

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 286 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 344

Query: 338 VE 339
           V+
Sbjct: 345 VK 346


>gi|261415252|ref|YP_003248935.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371708|gb|ACX74453.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325746|gb|ADL24947.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 654

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA--SPFRNIARDNWRLSLDRAY 293
           F    S    E+   L ++   L +     I I  HTD    P R+       L+L RA 
Sbjct: 483 FGVGQSKFTRESSDGLNRLAAHLRNYNGKTIEIVSHTDNLDRPERSRV-----LALKRAE 537

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
                L+ +G+S   I   +G       + +        N RI++ V
Sbjct: 538 EVKSYLVMAGLSGQDIIA-TGKGGDEPLVPNTTPDNRMKNNRIEVFV 583


>gi|148284999|ref|YP_001249089.1| peptidoglycan-associated lipoprotein precursor [Orientia
           tsutsugamushi str. Boryong]
 gi|146740438|emb|CAM80934.1| peptidoglycan-associated lipoprotein precursor [Orientia
           tsutsugamushi str. Boryong]
          Length = 202

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +    + ++   I++  S  V  N  +   +   +    +  I +++   F         
Sbjct: 44  EDNDDIAEIVSSINAESSDQVTSNNAQQEGYVDVKHEQFLQAIHRKHKVYFATEKFDLSE 103

Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           E+  VL+   + L ++    I I GH D    R     N  L   RA S  Q L+  GVS
Sbjct: 104 ESKRVLRAQSDWLKNNPDVKIIIEGHCDE---RGTREYNLALGKKRADSVKQFLVTLGVS 160

Query: 306 EDRISKISGFAHHRL-----KIASDPMNSANRR-IDIL 337
            D+I   + +   +      K   D     NRR + I+
Sbjct: 161 RDKIE-TTSYGKDKPEVEVTKDNKDEAYRLNRRSVTII 197


>gi|86148944|ref|ZP_01067176.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597451|ref|ZP_01100686.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561995|ref|YP_002343774.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85840302|gb|EAQ57559.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190512|gb|EAQ94486.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359701|emb|CAL34487.1| putative flagellar motor protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925608|gb|ADC27960.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315927861|gb|EFV07186.1| ompA family protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928678|gb|EFV07961.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 247

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            ++  K+  K+ +  K   KEE+  L  L +  +   +  KRLQ    +  +     VA 
Sbjct: 60  STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266
           N+   V                     F++ S+     +    L+++ E+  +      I
Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            IRG+TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P
Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210

Query: 327 MNSANRRIDI 336
               N R++I
Sbjct: 211 QTLENNRVEI 220



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
                 IFD  +      ++K          + S +LK        Q + ++     L  
Sbjct: 53  ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183
           S            + E+G     S D++  + +      +LPP +K +I
Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157


>gi|209520168|ref|ZP_03268940.1| OmpA/MotB domain protein [Burkholderia sp. H160]
 gi|209499375|gb|EDZ99458.1| OmpA/MotB domain protein [Burkholderia sp. H160]
          Length = 116

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+I        L +   V        ++I G+TD++  R     N +LS  RA S 
Sbjct: 9   FATDSAILSSAAKASLDQFLRVNEGINFRRVTIIGYTDSTGSRGH---NQKLSEARAQSV 65

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILV 338
            + L   G+           A   +   A+    + NRR+++ V
Sbjct: 66  LRYLRDHGLIAQSFVAEGAAADDPVASNATAEGRALNRRVEVRV 109


>gi|71734119|ref|YP_274824.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554672|gb|AAZ33883.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 447

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|330985312|gb|EGH83415.1| OmpA family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 447

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|85714376|ref|ZP_01045364.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85698823|gb|EAQ36692.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 154

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLD 290
           +   F+   +   P+ I  L+K    L  +      +I GH D    R     N  L   
Sbjct: 46  DRVFFESDQTSLSPQAITTLEKQARWL-QTYNRYSFTIEGHADE---RGTREYNIALGAR 101

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           RA +    L   G+   R+  IS +   R     + ++  S NRR
Sbjct: 102 RAQTVRSFLASRGIDPGRMRTIS-YGKERPVAVCNDISCWSQNRR 145


>gi|325205456|gb|ADZ00909.1| ompA family protein [Neisseria meningitidis M04-240196]
          Length = 244

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +    + + GHTD   F    + N  LS  RAY 
Sbjct: 106 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 163 VANNLVSNGVPVSRISAV-GLGESQ 186


>gi|92113977|ref|YP_573905.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
 gi|91797067|gb|ABE59206.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043]
          Length = 177

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        PE   VL    E L       + + GH D    R     N  L   RA + 
Sbjct: 77  FAFDRDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADE---RGTREYNLGLGERRARAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
            Q L   GVS  +I  +S +   R  +    +   + NRR+
Sbjct: 134 EQYLTVEGVSASQIEIVS-YGEERPAVRGHDEESYAQNRRV 173


>gi|325278790|ref|YP_004251332.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324310599|gb|ADY31152.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 366

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +S++  PE    + ++   L  +    +++ G+ D        R N  LS  RA +
Sbjct: 263 FFKINSAVIRPEEAGKVDELAAYLQKNPAAQVTLTGYADVQ--TGNHRLNKTLSARRAQA 320

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
               L   G++ DRI+  S         A+        R+ I +
Sbjct: 321 VADALTAKGIAADRITADS-QGDTVQPFAT----PEENRVTICI 359


>gi|312270773|gb|ADQ55787.1| OmpA [Haemophilus parasuis]
 gi|312270775|gb|ADQ55788.1| OmpA [Haemophilus parasuis]
          Length = 371

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 251 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 307

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 308 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 366

Query: 342 Q 342
           +
Sbjct: 367 K 367


>gi|312270751|gb|ADQ55776.1| OmpA [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|312270745|gb|ADQ55773.1| OmpA [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|312270741|gb|ADQ55771.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|312270727|gb|ADQ55764.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|312270725|gb|ADQ55763.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|307720703|ref|YP_003891843.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306978796|gb|ADN08831.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 180

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           +KE  +  K ++    + +++ +  +  VA       +  +T    + +I  +  T  FD
Sbjct: 21  TKEPAVQKKTEEVASPVVQEVEAVTTETVASENS--TINSSTNELSMNAIESKLPTIYFD 78

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAY 296
                  PE    +    E+     +  S+   G+ D          N+ L L RA +  
Sbjct: 79  FDKYNIKPEMQERIDAAAELGKTGAKAFSVKLEGNCDEW---GSDEYNFALGLKRANAVK 135

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           + L+  G+   RIS +S +               + NRR++  +  
Sbjct: 136 KALVADGIDPSRISMVS-YGESNPVCTEHTRACWAKNRRVNFKLLP 180


>gi|299773291|gb|ADJ38720.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|299773285|gb|ADJ38717.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773283|gb|ADJ38716.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773281|gb|ADJ38715.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773277|gb|ADJ38713.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773263|gb|ADJ38706.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773261|gb|ADJ38705.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773267|gb|ADJ38708.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773257|gb|ADJ38703.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|299773255|gb|ADJ38702.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|299773251|gb|ADJ38700.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|281357860|ref|ZP_06244346.1| OmpA/MotB domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281315807|gb|EFA99834.1| OmpA/MotB domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 216

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S + +P     L +I   ++   E  + + GH D    R     N  L   RA + 
Sbjct: 110 FAYDSDVLVPSETANLDRIAAYMSDKPELGLLVEGHCDQ---RGTEEYNRALGERRANAI 166

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
              L   G+++ R+  IS +   +  +  +   +   NRR
Sbjct: 167 RAYLAGKGLADTRMKTIS-YGEDKPAVEGNNEEAWRQNRR 205


>gi|209968962|gb|ACJ02842.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|209968954|gb|ACJ02838.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|237746664|ref|ZP_04577144.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes
           HOxBLS]
 gi|229378015|gb|EEO28106.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes
           HOxBLS]
          Length = 167

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           + +  FD  S +   E   V+      L       + I+G+TD    R  +  N  L   
Sbjct: 61  QKSVYFDFDSYVVKGEYQPVVDAHARYLNGHRNRTVVIQGNTDE---RGGSEYNLALGQK 117

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           RA +  + +   GV + ++  +S G    R    ++   + NRR DI+
Sbjct: 118 RAEAVRKAMALMGVPDSQMEAVSFGKEKPRATGNNEAAWAENRRADIV 165


>gi|224714311|gb|ACN62150.1| outer membrane protein A [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|224714275|gb|ACN62132.1| outer membrane protein A [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|209968936|gb|ACJ02829.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968942|gb|ACJ02832.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968946|gb|ACJ02834.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968956|gb|ACJ02839.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968958|gb|ACJ02840.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714295|gb|ACN62142.1| outer membrane protein A [Haemophilus parasuis]
 gi|312270743|gb|ADQ55772.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|209968926|gb|ACJ02824.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714285|gb|ACN62137.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|209968908|gb|ACJ02815.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714283|gb|ACN62136.1| outer membrane protein A [Haemophilus parasuis]
          Length = 369

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 249 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 305

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 306 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 364

Query: 342 Q 342
           +
Sbjct: 365 K 365


>gi|209968902|gb|ACJ02812.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968930|gb|ACJ02826.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714289|gb|ACN62139.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|209968934|gb|ACJ02828.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|222831779|gb|ACJ23249.2| OmpA [Haemophilus parasuis]
 gi|224714293|gb|ACN62141.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714317|gb|ACN62153.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714319|gb|ACN62154.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714321|gb|ACN62155.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714335|gb|ACN62162.1| outer membrane protein A [Haemophilus parasuis]
 gi|299773259|gb|ADJ38704.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773265|gb|ADJ38707.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773271|gb|ADJ38710.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773273|gb|ADJ38711.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773275|gb|ADJ38712.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773279|gb|ADJ38714.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773287|gb|ADJ38718.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|312270747|gb|ADQ55774.1| OmpA [Haemophilus parasuis]
 gi|312270749|gb|ADQ55775.1| OmpA [Haemophilus parasuis]
 gi|312270753|gb|ADQ55777.1| OmpA [Haemophilus parasuis]
 gi|312270755|gb|ADQ55778.1| OmpA [Haemophilus parasuis]
 gi|312270757|gb|ADQ55779.1| OmpA [Haemophilus parasuis]
 gi|312270759|gb|ADQ55780.1| OmpA [Haemophilus parasuis]
 gi|312270761|gb|ADQ55781.1| OmpA [Haemophilus parasuis]
 gi|312270763|gb|ADQ55782.1| OmpA [Haemophilus parasuis]
 gi|312270765|gb|ADQ55783.1| OmpA [Haemophilus parasuis]
 gi|312270767|gb|ADQ55784.1| OmpA [Haemophilus parasuis]
 gi|312270769|gb|ADQ55785.1| OmpA [Haemophilus parasuis]
 gi|312270771|gb|ADQ55786.1| OmpA [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|167856409|ref|ZP_02479133.1| outer membrane protein P5 precursor [Haemophilus parasuis 29755]
 gi|167852469|gb|EDS23759.1| outer membrane protein P5 precursor [Haemophilus parasuis 29755]
 gi|209968896|gb|ACJ02809.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968900|gb|ACJ02811.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968904|gb|ACJ02813.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968916|gb|ACJ02819.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968932|gb|ACJ02827.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968960|gb|ACJ02841.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968964|gb|ACJ02843.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|222831781|gb|ACJ23250.2| OmpA [Haemophilus parasuis]
 gi|224714297|gb|ACN62143.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714299|gb|ACN62144.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714301|gb|ACN62145.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714309|gb|ACN62149.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714313|gb|ACN62151.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714315|gb|ACN62152.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714323|gb|ACN62156.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714325|gb|ACN62157.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714327|gb|ACN62158.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714329|gb|ACN62159.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714331|gb|ACN62160.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714333|gb|ACN62161.1| outer membrane protein A [Haemophilus parasuis]
 gi|299773239|gb|ADJ38694.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|299773269|gb|ADJ38709.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|312270735|gb|ADQ55768.1| OmpA [Haemophilus parasuis]
 gi|312270737|gb|ADQ55769.1| OmpA [Haemophilus parasuis]
 gi|312270739|gb|ADQ55770.1| OmpA [Haemophilus parasuis]
          Length = 367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|221068061|ref|ZP_03544166.1| peptidoglycan-associated lipoprotein [Comamonas testosteroni KF-1]
 gi|220713084|gb|EED68452.1| peptidoglycan-associated lipoprotein [Comamonas testosteroni KF-1]
          Length = 175

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +    ++   + +  +    + + GHTD    R     N  L   RA + 
Sbjct: 74  FDFDSYSVKADAQPQIEAHAKFIKANPAAKVQLEGHTDE---RGGREYNLALGQKRAEAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
            + L   GV++ ++  +S +   +        +  + NRR++I
Sbjct: 131 RRSLGLLGVNDAQVEAVS-YGKEKPAAEGHGEDAYAQNRRVEI 172


>gi|109675220|gb|ABG37059.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 282

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 218 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 274

Query: 293 YSAYQVLM 300
            S    L+
Sbjct: 275 NSVKSALV 282


>gi|22126613|ref|NP_670036.1| outer membrane protein A [Yersinia pestis KIM 10]
 gi|45441153|ref|NP_992692.1| outer membrane protein A [Yersinia pestis biovar Microtus str.
           91001]
 gi|21959622|gb|AAM86287.1|AE013876_5 outer membrane porin A [Yersinia pestis KIM 10]
 gi|45436013|gb|AAS61569.1| putative outer membrane porin A protein [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 363

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279
           I+D +     +  +F  + +   PE    L ++   L+        + + G  D      
Sbjct: 226 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 282

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330
               N  LS  RA S    L+  G+  D+I+   G         +      P  +     
Sbjct: 283 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 341

Query: 331 --NRRIDILVE 339
             +RR++I V+
Sbjct: 342 APDRRVEIEVK 352


>gi|238795889|ref|ZP_04639402.1| Outer membrane protein A [Yersinia mollaretii ATCC 43969]
 gi|238720352|gb|EEQ12155.1| Outer membrane protein A [Yersinia mollaretii ATCC 43969]
          Length = 350

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 222 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 279 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|123441891|ref|YP_001005874.1| outer membrane protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088852|emb|CAL11658.1| putative outer membrane porin A protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 357

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 286 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 344

Query: 338 VE 339
           V+
Sbjct: 345 VK 346


>gi|320324614|gb|EFW80691.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 447

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|315182421|gb|ADT89334.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218]
          Length = 316

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + GH D        + N+ LSL RA +   +L++ GV  ++I  I           +
Sbjct: 243 KVLLVGHADNQ---GSNQYNYALSLRRAVTISNILVELGVDPEQIV-IEARGDSEPIANN 298

Query: 325 D--PMNSANRRIDILV 338
                   NRR+++++
Sbjct: 299 AILEQRKKNRRVEMIL 314


>gi|288225943|gb|ADC44456.1| OmpA [Enterobacter sp. i1]
          Length = 111

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G+TD     + A  N  LS
Sbjct: 23  KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 79

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             RA S    L+  G+  D+IS   G       
Sbjct: 80  ERRAQSVVDYLISKGIPADKISA-RGMGESNPV 111


>gi|260769571|ref|ZP_05878504.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
 gi|260614909|gb|EEX40095.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972]
          Length = 316

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + GH D        + N+ LSL RA +   +L++ GV  ++I  I           +
Sbjct: 243 KVLLVGHADNQ---GSNQYNYALSLRRAVTISNILVELGVDPEQIV-IEARGDSEPIANN 298

Query: 325 D--PMNSANRRIDILV 338
                   NRR+++++
Sbjct: 299 AILEQRKKNRRVEMIL 314


>gi|197117521|ref|YP_002137948.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
 gi|197086881|gb|ACH38152.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
          Length = 450

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 85/297 (28%), Gaps = 31/297 (10%)

Query: 63  KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122
             +   F    K     ++       P    +  +   S+     K+     I      K
Sbjct: 164 AGVSFVFGGEKKQPRHRARPQIAAATPMTNPAATEASTSLSTQTAKDQP--VITHRETPK 221

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                       +  Q       +    +     +             ++  +P +    
Sbjct: 222 PVPASPAPATVATTPQSLAVPVIATPGIASSASSVQPPPVAATVATTPQSLAVPVIVTPG 281

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN--------- 233
           I +     +   +A +I+ T     A    +    E T     I +  ++          
Sbjct: 282 IASSASSVQPPPVAAEIAKT-----APAPRENDSTEATDQAKQIELEAEKKPASTPSVPV 336

Query: 234 -TPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNW 285
             P+      FD +S    P  I V +KIG  +  + ++I+ I GH D          N 
Sbjct: 337 AAPLLKATFEFDCNSYKIRPSFIDVGRKIGLFMKRNPQIIAQIHGHAD---ITGSDDHNL 393

Query: 286 RLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
            LS  RA    Q LMK   +S DR   I           +        NRR  +++ 
Sbjct: 394 ALSEKRAVRTKQYLMKMYNLSADRFE-IRTMGSSEPIADNTTEVGRKKNRRALVIIL 449


>gi|91974956|ref|YP_567615.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
 gi|91681412|gb|ABE37714.1| OmpA/MotB [Rhodopseudomonas palustris BisB5]
          Length = 697

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I + L  S          I GHTDA+       DN  LS  R
Sbjct: 571 FELGSWDISPDQASKLQAIADGLNRSISRNPREVFLIEGHTDAT---GNDTDNLSLSDRR 627

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA  +L +   V  + ++   G+    LK+ SD     NRR+ +
Sbjct: 628 AESAAALLTQQFAVPAENLTS-QGYGEQYLKVQSDGPERQNRRVTV 672


>gi|88801593|ref|ZP_01117121.1| OmpA family protein [Polaribacter irgensii 23-P]
 gi|88782251|gb|EAR13428.1| OmpA family protein [Polaribacter irgensii 23-P]
          Length = 651

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG-HTDASPFRNIARDNW 285
            +I + NT  FD +      E  + L KI  ++    ++I     HTDA   +     N 
Sbjct: 510 ELIIKINTIYFDSNKWNIRSEAAIELDKIVSIMTKYPKIIVASASHTDA---KGNRAYNK 566

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSA----------NR 332
            LS  RA SA   ++  G+S +RI    GF    L      +D  ++           NR
Sbjct: 567 ILSQRRAKSAVDYIIYKGISPERIYG-KGFGEDELTNKCVDNDAHSNRVKCSKLQHQENR 625

Query: 333 RIDILVED 340
           R   LV +
Sbjct: 626 RTSFLVLN 633


>gi|330890787|gb|EGH23448.1| OmpA family protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 447

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447


>gi|315453876|ref|YP_004074146.1| peptidoglycan-associated lipoprotein [Helicobacter felis ATCC
           49179]
 gi|315132928|emb|CBY83556.1| peptidoglycan-associated lipoprotein [Helicobacter felis ATCC
           49179]
          Length = 227

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 13/215 (6%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            +          QS          S K   +      E +  K +     P+S+ K    
Sbjct: 21  SKGAKPSKPPKSQSAENVQEQPTQSVKNTTVHPEGVQESTPAKSQTPQTSPISQTKEGQP 80

Query: 187 KRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                L+   A+K ++  S  V          E  ++G ++          FD       
Sbjct: 81  GTAHELETQNAQKNANATSETVPAPQEPQSEQEQFKSGEIV------GQVYFDFDKYNVR 134

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           P+    + +  + +  S   + + G+TD   F      N+ L   RA S  + L+  G++
Sbjct: 135 PDMQDAVDQGAQKIQDSKMKVLLEGNTDE--FGTGEY-NFALGNKRALSVKEALVVKGIA 191

Query: 306 EDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
           +D I  IS F   +      +      NRR+DI V
Sbjct: 192 QDNIRTIS-FGESKPICLEKTKECYQKNRRVDIKV 225


>gi|262277489|ref|ZP_06055282.1| OmpA family protein [alpha proteobacterium HIMB114]
 gi|262224592|gb|EEY75051.1| OmpA family protein [alpha proteobacterium HIMB114]
          Length = 155

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            +   F  + S     +   L K    +  S   + + GH D    R     N  L   R
Sbjct: 49  PDRVFFATNKSGLHTASKSTLNKQAAYIKSSGISVVVEGHADE---RGTREYNLALGERR 105

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           A +    LM  GVS   ++ IS +   R         +   NRR  + V+ +
Sbjct: 106 ANAVRDYLMSQGVSGSNVTVIS-YGKERPVNPESSRLAWSQNRR-SVTVKAK 155


>gi|153010830|ref|YP_001372044.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151562718|gb|ABS16215.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 742

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+     +VLA        I GHTDA       R N  LS  R
Sbjct: 628 FATGSAEVSLSQAKTLRKVATAMQKVLAKDPGETFFIEGHTDAV---GSDRSNLVLSDKR 684

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +            G+    LKI +      NRR+ I
Sbjct: 685 AESVASLLTEVYEIPPENLVTQGYGERFLKIRTQAAEQENRRVTI 729


>gi|53719675|ref|YP_108661.1| OmpA family protein [Burkholderia pseudomallei K96243]
 gi|76810742|ref|YP_333152.1| OmpA family protein [Burkholderia pseudomallei 1710b]
 gi|126453035|ref|YP_001065862.1| OmpA family outer membrane protein [Burkholderia pseudomallei
           1106a]
 gi|134282791|ref|ZP_01769494.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 305]
 gi|167720016|ref|ZP_02403252.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           DM98]
 gi|167739026|ref|ZP_02411800.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 14]
 gi|167816239|ref|ZP_02447919.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 91]
 gi|167824618|ref|ZP_02456089.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 9]
 gi|167846148|ref|ZP_02471656.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           B7210]
 gi|167894724|ref|ZP_02482126.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           7894]
 gi|167903126|ref|ZP_02490331.1| outer membrane protein, OmpA family [Burkholderia pseudomallei NCTC
           13177]
 gi|167911363|ref|ZP_02498454.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 112]
 gi|167919383|ref|ZP_02506474.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           BCC215]
 gi|217423544|ref|ZP_03455045.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 576]
 gi|226196265|ref|ZP_03791848.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811866|ref|YP_002896317.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           MSHR346]
 gi|242314198|ref|ZP_04813214.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1106b]
 gi|254180141|ref|ZP_04886740.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1655]
 gi|254188449|ref|ZP_04894960.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198064|ref|ZP_04904486.1| outer membrane protein, OmpA family [Burkholderia pseudomallei S13]
 gi|254259492|ref|ZP_04950546.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1710a]
 gi|254297974|ref|ZP_04965427.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           406e]
 gi|52210089|emb|CAH36063.1| OmpA family protein [Burkholderia pseudomallei K96243]
 gi|76580195|gb|ABA49670.1| OmpA family protein [Burkholderia pseudomallei 1710b]
 gi|126226677|gb|ABN90217.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1106a]
 gi|134245877|gb|EBA45968.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 305]
 gi|157808001|gb|EDO85171.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           406e]
 gi|157936128|gb|EDO91798.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654805|gb|EDS87498.1| outer membrane protein, OmpA family [Burkholderia pseudomallei S13]
 gi|184210681|gb|EDU07724.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1655]
 gi|217393402|gb|EEC33423.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 576]
 gi|225931663|gb|EEH27667.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506719|gb|ACQ99037.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           MSHR346]
 gi|242137437|gb|EES23839.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1106b]
 gi|254218181|gb|EET07565.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1710a]
          Length = 236

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           MF      ++    +    L ++ + L     + +SI G+TD          N +LS  R
Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337
           A +    L+ +GV  D +    G       +  D    A        NRR++++
Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLAPNRRVEVV 229


>gi|323978486|gb|EGB73569.1| OmpA family protein [Escherichia coli TW10509]
          Length = 160

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTRARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|300728041|ref|ZP_07061414.1| putative outer membrane protein [Prevotella bryantii B14]
 gi|299774643|gb|EFI71262.1| putative outer membrane protein [Prevotella bryantii B14]
          Length = 410

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S     +    L  + E+L    +V +SI G+   +     A  N RL+  RA + 
Sbjct: 312 FAHNSHRLTQKEADKLNAVAEMLKAQPDVTLSINGYASDT---GSAGYNLRLTQLRADTV 368

Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDILVEDR 341
             +L + G+   R+  + G     +     +      RR+++++ ++
Sbjct: 369 KMLLKRLGIDGHRLHPVIGKGIDRKAPTGKEA-----RRVELMMNEK 410


>gi|71282015|ref|YP_270145.1| sodium-type flagellar protein MotY [Colwellia psychrerythraea 34H]
 gi|71147755|gb|AAZ28228.1| sodium-type flagellar protein MotY [Colwellia psychrerythraea 34H]
          Length = 291

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +  SS      +   ++ I + L+   E+  + I  ++D+         N +LS  RA  
Sbjct: 187 YQSSSDKFTKASQRRIEMIRQYLSLDPELELVLIDAYSDSY---GGRWSNLKLSERRAAK 243

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
                +++G+   RI    G+   R   ++D       NRR+ I
Sbjct: 244 IRDYFVENGIEVSRIEA-KGYGEKRHISSNDTTLGRGKNRRVVI 286


>gi|295097172|emb|CBK86262.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 146

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FDK+ +   PE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 38  DKILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNY---GEESYNEALSLKR 94

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        K            G        ++      + NRR+ +++
Sbjct: 95  ANVVADAWAKGANIPRSNLTTRGLGKKYPISSNRTAQGRAENRRVAVVI 143


>gi|148826224|ref|YP_001290977.1| outer membrane protein P5 [Haemophilus influenzae PittEE]
 gi|148716384|gb|ABQ98594.1| Outer membrane protein P5 [Haemophilus influenzae PittEE]
          Length = 238

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  +++ G+TD     + A +  +LS +RA S 
Sbjct: 125 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 181

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 182 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 234


>gi|91777230|ref|YP_552438.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|91689890|gb|ABE33088.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 372

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+   +  LP     L ++   L  + +V  I I G+TD          N +LS  RA 
Sbjct: 237 FDRGDLAGMLPAGKAKLDELVRNLKQADDVTSIRIDGYTDRL---GSDSYNRQLSAKRAE 293

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
           +  + L+  GV+        G       +  +  N          NRR+++
Sbjct: 294 TVKRYLLSGGVTAP--ISARGRGKEDPVVQCNDHNREALIACLAPNRRVEL 342


>gi|329124105|ref|ZP_08252652.1| outer membrane protein A [Haemophilus aegyptius ATCC 11116]
 gi|327467530|gb|EGF13028.1| outer membrane protein A [Haemophilus aegyptius ATCC 11116]
          Length = 348

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   ++   +  + + G+TD     + A +  +LS  RA S 
Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVVVAGYTD--RIGSDAFNV-KLSQKRADSV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338
               +  GV+ D IS  +G+        +               + +RR++I V
Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344


>gi|298386442|ref|ZP_06995998.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|298260819|gb|EFI03687.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 363

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284
           + I   +    F  +S+    +    +  + E L  ++T  +S+ G+ D       AR N
Sbjct: 255 VVIEPMKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKG--TGNARIN 312

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +LS  RA +  + L   G++ DRI+ ++          +        R+ I +
Sbjct: 313 SKLSEKRANNVVEALKAKGIAADRIT-VAYKGDTVQPYNT----PEENRVSICI 361


>gi|127512457|ref|YP_001093654.1| OmpA domain-containing protein [Shewanella loihica PV-4]
 gi|126637752|gb|ABO23395.1| OmpA domain protein [Shewanella loihica PV-4]
          Length = 180

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 7/132 (5%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           G V    V  +L    +  I    + + +   FD   S    +   VL   GE L     
Sbjct: 48  GGVETGGVAPILTPEEQQRIKYQELRKEHIIYFDFDRSSVSSDFSEVLNAHGEYLLEHPN 107

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322
             + I GH D    R     N  L   RA +  + L   GV   ++S +S +   + +  
Sbjct: 108 VRVMIEGHADE---RGTPEYNIALGERRAKAVAKYLQSMGVLPSQMSIVS-YGEEKPQDF 163

Query: 323 -ASDPMNSANRR 333
             +D   + NRR
Sbjct: 164 SRTDDGFAKNRR 175


>gi|262404181|ref|ZP_06080736.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp.
           RC586]
 gi|262349213|gb|EEY98351.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp.
           RC586]
          Length = 172

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 53  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLKVTIEGHADE-- 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV  D++S +S +   +  +   SD   + NRR
Sbjct: 111 -RGTPEYNIALGERRAQAVAKYLEALGVQADQVSIVS-YGEEKPLVLGQSDEAYAKNRR 167


>gi|332520207|ref|ZP_08396671.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044766|gb|EGI80960.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 648

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +  V L+KI + +   +   I +R HTD+   RN +  N  LS  RA + 
Sbjct: 540 FDLDKHYIRQDAEVELRKIIDFMNVYSNIKIDVRSHTDS---RNTSEYNLDLSNRRAQAT 596

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              L+   G++  R++   G+   +L+         S+  +  NRR + ++
Sbjct: 597 IDYLVNVGGINRARLTG-KGYGELQLRNRCGDGVPCSESEHQLNRRSEFII 646


>gi|330815889|ref|YP_004359594.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3]
 gi|327368282|gb|AEA59638.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3]
          Length = 218

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 98  QADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLR 154

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV   ++    G             N  N           RR+++ V 
Sbjct: 155 RAQAVKSYLVSKGVESSKVY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 211

Query: 340 DRQ 342
             Q
Sbjct: 212 GTQ 214


>gi|294678711|ref|YP_003579326.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294477531|gb|ADE86919.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003]
          Length = 173

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S    E    L    + L       +I  GH D          N  L   RA S 
Sbjct: 67  FVVDQSTLTDEARATLSGQAQWLNSHGNYAAIIEGHADEQ---GTREYNLALGARRASSV 123

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337
            Q L+  GV   R+  +S +   R     AS+   S NRR + ++
Sbjct: 124 QQYLISQGVPATRLRTVS-YGKERPIATCASESCFSQNRRAVTVI 167


>gi|238026527|ref|YP_002910758.1| OmpA/MotB domain-containing protein [Burkholderia glumae BGR1]
 gi|237875721|gb|ACR28054.1| OmpA/MotB domain protein [Burkholderia glumae BGR1]
          Length = 218

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290
           +   +FD   +   P     L ++   +      + +  G+TD     +   ++ RLSL 
Sbjct: 98  QADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLR 154

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339
           RA +    L+  GV   ++    G             N  N           RR+++ V 
Sbjct: 155 RAQAVKSYLVSKGVESSKVY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 211

Query: 340 DRQ 342
             Q
Sbjct: 212 GTQ 214


>gi|153947861|ref|YP_001401507.1| outer membrane protein A [Yersinia pseudotuberculosis IP 31758]
 gi|152959356|gb|ABS46817.1| outer membrane protein A [Yersinia pseudotuberculosis IP 31758]
          Length = 357

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279
           I+D +     +  +F  + +   PE    L ++   L+        + + G  D      
Sbjct: 220 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 276

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330
               N  LS  RA S    L+  G+  D+I+   G         +      P  +     
Sbjct: 277 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 335

Query: 331 --NRRIDILVE 339
             +RR++I V+
Sbjct: 336 APDRRVEIEVK 346


>gi|330448107|ref|ZP_08311755.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492298|dbj|GAA06252.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 348

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              E    LQ + + L       + + G+T  +     A  N +LS  RA +   +L + 
Sbjct: 232 LTAEDQQKLQPMMQRLTRYPSATVEVTGYTSNT---GSAAYNQKLSEKRAKNVAHLLSQY 288

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
             + ++I+   G        ++D     +ANRR+++
Sbjct: 289 VANPNQITA-KGMGEATPVASNDTAEGRAANRRVEV 323


>gi|29840731|ref|NP_829837.1| peptidoglycan-associated lipoprotein [Chlamydophila caviae GPIC]
 gi|29835081|gb|AAP05715.1| peptidoglycan-associated lipoprotein [Chlamydophila caviae GPIC]
          Length = 191

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  S +  + I GHTD    R  A  N  L   RA +
Sbjct: 87  FATDSYTIKGEENLAILSSLVRQMQKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 143

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
             Q L+K G+S DR+  IS +   +   +     +   NRR +  V  R
Sbjct: 144 VKQHLIKQGISADRLFTIS-YGKEQPVNSGHNELAWQQNRRTEFKVHAR 191


>gi|330860773|emb|CBX71062.1| outer membrane protein A [Yersinia enterocolitica W22703]
          Length = 363

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 235 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 291

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 292 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 350

Query: 338 VE 339
           V+
Sbjct: 351 VK 352


>gi|107101995|ref|ZP_01365913.1| hypothetical protein PaerPA_01003042 [Pseudomonas aeruginosa PACS2]
          Length = 461

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460


>gi|146276615|ref|YP_001166774.1| OmpA domain-containing protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554856|gb|ABP69469.1| OmpA domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 182

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F    S         L    + L A++   I I GH D          N  L   R
Sbjct: 72  DRVFFLVDQSTLNDSARTTLDTQSQWLMANADYAIIIEGHADEQ---GTREYNLALGARR 128

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A +    L+  G++  R+  +S G        +++   S NRR
Sbjct: 129 ASAVQDYLISKGIAPSRMKTVSYGKERPVEVCSTEECYSKNRR 171


>gi|239906031|ref|YP_002952770.1| putative peptidoglycan-associated lipoprotein [Desulfovibrio
           magneticus RS-1]
 gi|239795895|dbj|BAH74884.1| putative peptidoglycan-associated lipoprotein [Desulfovibrio
           magneticus RS-1]
          Length = 171

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    E    L +  E+L    +  + + G+ D    R  A  N  L   RA +A
Sbjct: 69  FALDSSNLSAEARQNLTRKAEILRQYPQIKLIVEGNCDQ---RGTAEYNLALGERRAQAA 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
            Q L+  G+  DR+S +S +   R      S+   + NRR
Sbjct: 126 AQYLVNLGIGADRLSTVS-YGKERPLDPGTSEAAYAKNRR 164


>gi|90408691|ref|ZP_01216841.1| putative outer membrane protein OmpA [Psychromonas sp. CNPT3]
 gi|90310205|gb|EAS38340.1| putative outer membrane protein OmpA [Psychromonas sp. CNPT3]
          Length = 415

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F  +SS        ++  I + L      I I G++D     ++  + W +S  RA   
Sbjct: 296 LFSVNSSQFKTNP-DLIDLIMKSLQSKEGNIIITGYSDN--LGSVKYNQW-ISEKRAKVV 351

Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDI 336
              ++  G+S  R I K  G  +      +    + NRR+++
Sbjct: 352 ANYIISEGISSSRLIVKSEGEFYPVASNKTATGRAENRRVEL 393


>gi|254805583|ref|YP_003083804.1| class 4 outer membrane protein [Neisseria meningitidis alpha14]
 gi|254669125|emb|CBA07752.1| class 4 outer membrane protein [Neisseria meningitidis alpha14]
          Length = 242

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +    + + GHTD   F    + N  LS  RAY 
Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184


>gi|15597744|ref|NP_251238.1| hypothetical protein PA2548 [Pseudomonas aeruginosa PAO1]
 gi|9948606|gb|AAG05936.1|AE004682_8 hypothetical protein PA2548 [Pseudomonas aeruginosa PAO1]
          Length = 464

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463


>gi|15676296|ref|NP_273431.1| outer membrane protein class 4 [Neisseria meningitidis MC58]
 gi|304386635|ref|ZP_07368919.1| outer membrane protein class 4 [Neisseria meningitidis ATCC 13091]
 gi|60416397|sp|P0A0V3|OMP4_NEIMB RecName: Full=Outer membrane protein class 4; Flags: Precursor
 gi|7225603|gb|AAF40822.1| outer membrane protein class 4 [Neisseria meningitidis MC58]
 gi|304339285|gb|EFM05361.1| outer membrane protein class 4 [Neisseria meningitidis ATCC 13091]
 gi|316984886|gb|EFV63842.1| ompA family protein [Neisseria meningitidis H44/76]
 gi|325128875|gb|EGC51731.1| ompA family protein [Neisseria meningitidis N1568]
 gi|325141028|gb|EGC63534.1| ompA family protein [Neisseria meningitidis CU385]
 gi|325199575|gb|ADY95030.1| ompA family protein [Neisseria meningitidis H44/76]
 gi|325203490|gb|ADY98943.1| ompA family protein [Neisseria meningitidis M01-240355]
          Length = 242

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +    + + GHTD   F    + N  LS  RAY 
Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184


>gi|299773253|gb|ADJ38701.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|296389028|ref|ZP_06878503.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa PAb1]
          Length = 461

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNQKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460


>gi|313107451|ref|ZP_07793639.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa 39016]
 gi|310880141|gb|EFQ38735.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa 39016]
          Length = 461

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460


>gi|254240978|ref|ZP_04934300.1| hypothetical protein PA2G_01659 [Pseudomonas aeruginosa 2192]
 gi|126194356|gb|EAZ58419.1| hypothetical protein PA2G_01659 [Pseudomonas aeruginosa 2192]
          Length = 464

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463


>gi|315223455|ref|ZP_07865312.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287]
 gi|314946628|gb|EFS98619.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287]
          Length = 397

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 78/241 (32%), Gaps = 13/241 (5%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P+    N+I   +D  +  NS       T      Q  + N F L+        K     
Sbjct: 148 PQLRISNRIAFLLDASMYINSKQQLTYDTKSANGQQGFQGNHFTLTAGLNIALGK---HG 204

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                    K  +LE+   +  N        +  +A K+ K        +   +   + D
Sbjct: 205 KHADWAAASKKDELEEVAQRVANLENNVADLKSEVANKQNKMNDANGNNVPDEIESYLND 264

Query: 210 NIVKGVLF----ETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           N           E     +   +I +      FD +SS P   +   +  + + +  +  
Sbjct: 265 NYKAKDKVGENGEVKDDDVAADLIRKGYINAYFDFNSSKPQISSSWAVDFVAKYMKSNPN 324

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I+I G+ D        + N  LS  RA +   +L+K+G+   RI+   G         
Sbjct: 325 AHININGYADEL---GGTQYNQTLSQKRADAVKDLLVKAGIDGSRITA-EGKGVDASVDK 380

Query: 324 S 324
           +
Sbjct: 381 N 381


>gi|15607090|ref|NP_214472.1| peptidoglycan associated lipoprotein [Aquifex aeolicus VF5]
 gi|2984343|gb|AAC07863.1| peptidoglycan associated lipoprotein [Aquifex aeolicus VF5]
          Length = 203

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K+ + +L K++S  L   V     +          + I+  +Q     FD +      + 
Sbjct: 58  KENIANLDKRVS-ALESDVDSLRREHEEIRAEIEKLKITGKEQV-RVYFDSNKFTLRDDA 115

Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
              L ++ + +     + + + G+ D    R     N+ LS+ RA +    L+K+G+  +
Sbjct: 116 KATLDELIDAVRDKDIKKVIVVGYADPRGTRGY---NFELSMKRAQNVAAYLIKNGIPVE 172

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339
           ++ +I+ +    L       +   R +D++V 
Sbjct: 173 KV-RIASYGE-ELANLIGERHPEQRAVDVIVL 202


>gi|300867579|ref|ZP_07112229.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334467|emb|CBN57399.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 982

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 12/200 (6%)

Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
            G+   +    + E      + + + ++   ++    +      +   +   +N+ E   
Sbjct: 762 TGNLPNQGLRAKAEKIAQATAPNLKVDNKIIAIDVPPDPASVAAEVKRVTAVLNQIEGVS 821

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
           +     E+ + ++        A+KI+ ++  +     V+ V+       + I+       
Sbjct: 822 ISSRYGERKVTVEGTVMQMTDAQKIAQSMKQVPG---VQSVISTVKLNPLKIT-----TR 873

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
             F+  S+    E   V+  I E L    +  + I GH+D    +     N +L+  RA 
Sbjct: 874 IYFNVGSATLNSEYGEVIGNIKEFLKQYPQKHLKIIGHSDR---KGNLAINQQLARKRAE 930

Query: 294 SAYQVLMKSGVSEDRISKIS 313
           +    L++ GV   R+  ++
Sbjct: 931 AVRVALVQQGVDPRRLQVVA 950


>gi|297620366|ref|YP_003708503.1| Sodium-type flagellar protein motY precursor [Waddlia chondrophila
           WSU 86-1044]
 gi|297375667|gb|ADI37497.1| Sodium-type flagellar protein motY precursor [Waddlia chondrophila
           WSU 86-1044]
          Length = 248

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ I   +    +  + + GH D    R     N  L   R+ S  ++L+K GV  +RI 
Sbjct: 158 LRTIAAYMQKHPDTYLFVEGHCDE---RGAEAYNLALGAKRSNSVRELLIKEGVRPERIF 214

Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILVED 340
            +S +   R   +  ++   S NRR +  + +
Sbjct: 215 TVS-YGKERPADSGHNEESWSKNRRAEFKIFN 245


>gi|157959916|ref|YP_001499950.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157844916|gb|ABV85415.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 303

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F  SSS+        L  +   L        + + GH DA         N  LS +RA 
Sbjct: 182 LFAPSSSLLNAAHEQDLYAVYRYLQADPSIVEVLVDGHADA---SGDHLANLVLSKERAD 238

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
                L++ GVS  ++ +           +++       NRR+ +
Sbjct: 239 EVVSRLIELGVSP-KMIQTRHHGTRTPVASNNSTQGRELNRRVTL 282


>gi|295395656|ref|ZP_06805848.1| peptidoglycan-associated lipoprotein OprL [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971472|gb|EFG47355.1| peptidoglycan-associated lipoprotein OprL [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 602

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 21/114 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F+  S     +    +  + E L  S +   + + GHTD          N  LS  RA 
Sbjct: 295 LFEFDSDKLNKDAQKTIDSVAEELKKSAKGQKVVVEGHTDDE---GDEGYNQGLSERRAE 351

Query: 294 SAYQV----LMKSGVSEDRISKISGFAHHRLKIAS-----DP---MNSANRRID 335
           S  +     L  +G+      +  GF   +  + +     +P     + NRR+ 
Sbjct: 352 SVKKAVEPKLSGAGIQ----LETKGFGETKPIVPNRDGKGNPIKKNQAKNRRVS 401


>gi|332664418|ref|YP_004447206.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333232|gb|AEE50333.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 289

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 247 ETIVVL------QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           E   +L        + + LA      +SI GHTD++     A++N +L L+RA +  +  
Sbjct: 192 EFRPILPLVQYADSVRQYLALHKNKKLSIIGHTDST---GDAKNNLKLGLERAQNTMRYF 248

Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
            + G+   +++  S G  H     +++     NRRI+ ++E
Sbjct: 249 RELGIPPSQMAAYSEGSKHPVSDNSTEVGKRRNRRINFIIE 289



 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 251 VLQKIGEVLAHSTEVI-SIRGH--TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            L KI   L  +  ++ +I G   TD     +   +N  LS  RA +  +++++ G+S  
Sbjct: 81  FLDKIANHLQQNPTILLNITGGYGTDEETAASGFFENLGLS--RADAVRKLMIQRGISPG 138

Query: 308 RI 309
           R+
Sbjct: 139 RV 140


>gi|254000099|ref|YP_003052162.1| peptidoglycan-associated lipoprotein [Methylovorus sp. SIP3-4]
 gi|313202058|ref|YP_004040716.1| peptidoglycan-associated lipoprotein [Methylovorus sp. MP688]
 gi|253986778|gb|ACT51635.1| peptidoglycan-associated lipoprotein [Methylovorus sp. SIP3-4]
 gi|312441374|gb|ADQ85480.1| peptidoglycan-associated lipoprotein [Methylovorus sp. MP688]
          Length = 178

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L    +  + ++G+TD    R     N  L   RA + 
Sbjct: 75  FDFDKDEVKPEYRDLVNAHAKYLVEHPDAKVILQGNTDE---RGTREYNLALGQRRAVAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337
            QVL   GVS+ +I  IS +   + + A   +   S NRR DI+
Sbjct: 132 KQVLNLQGVSDKQIETIS-YGEEKPQAAGSDEAAYSKNRRADIV 174


>gi|213967029|ref|ZP_03395179.1| OmpA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301385214|ref|ZP_07233632.1| OmpA family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059607|ref|ZP_07251148.1| OmpA family protein [Pseudomonas syringae pv. tomato K40]
 gi|302130155|ref|ZP_07256145.1| OmpA family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928351|gb|EEB61896.1| OmpA family protein [Pseudomonas syringae pv. tomato T1]
          Length = 447

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|115377102|ref|ZP_01464317.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|310822806|ref|YP_003955164.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365877|gb|EAU64897.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1]
 gi|309395878|gb|ADO73337.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 237 FDKSSSIPLPETIVVLQ----KIGEVLAH----STEVISIRGHTDASPFRNIARDNWRLS 288
           F   S+         L     +I E ++     +   + + GHTD+         N  LS
Sbjct: 256 FASGSAELAVGERGKLDHSHARIAEAVSRYGRFAALRLYVLGHTDSV---GATASNRELS 312

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           L RA S      K G+         GF      +    +     NRR + ++
Sbjct: 313 LQRARSIAAYFHKRGLRLPIFY--EGFGEQAPAVMTPDETAEVGNRRAEYIL 362


>gi|330810626|ref|YP_004355088.1| hypothetical protein PSEBR_a3732 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378734|gb|AEA70084.1| Conserved hypothetical protein; putative exported protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 449

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L ++ + +     +   +++ G  DA   P R        LS  R
Sbjct: 348 FEEGSASLDNKAHQDLGRVFDYIKQHGKTDRSVTLVGFGDAKDDPARADL-----LSKLR 402

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L+K GV+   + ++ GF       A+  D     NRR+++ V
Sbjct: 403 AMAVRRELVKYGVA---LREVRGFGALMPVAANSEDAGRVRNRRVEVWV 448


>gi|167374415|gb|ABZ79137.1| outer membrane protein [Riemerella anatipestifer]
          Length = 338

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 235 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 292 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 333


>gi|167374413|gb|ABZ79136.1| outer membrane protein [Riemerella anatipestifer]
          Length = 338

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 235 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 292 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 333


>gi|170739243|ref|YP_001767898.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193517|gb|ACA15464.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 210

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +SS      +  +  +G  LA        I I GHTD    +   R N RLS  RA 
Sbjct: 99  FAYNSSKIGHGALAQVSALGASLARPELRDSTILIVGHTDG---KGSDRGNQRLSERRAR 155

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +    +++  GV+   +  + GF    LK A++P  +ANRR+ 
Sbjct: 156 AVKDYIVRHYGVAAGNLIGV-GFGKSHLKEAANPYAAANRRVT 197


>gi|50235099|gb|AAT70752.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235103|gb|AAT70754.1| OmpA [Riemerella anatipestifer]
 gi|50235105|gb|AAT70755.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235075|gb|AAT70740.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235077|gb|AAT70741.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235095|gb|AAT70750.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235081|gb|AAT70743.1| OmpA [Riemerella anatipestifer]
 gi|50235097|gb|AAT70751.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235093|gb|AAT70749.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235107|gb|AAT70756.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + S   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GVS  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|83859799|ref|ZP_00953319.1| Peptidoglycan-associated lipoprotein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852158|gb|EAP90012.1| Peptidoglycan-associated lipoprotein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 170

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F         E    L++    L+      I I G+ D    R     N  L   R
Sbjct: 60  DRVFFALDQHTLSNEARATLRRQAAWLSSYPGARILIAGNCDE---RGTREYNLALGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
           A +A   L+  GV   RIS +S +   R           + NR
Sbjct: 117 ANAARDFLVSQGVDPSRISTVS-YGKERPVCNQSTEQCWATNR 158


>gi|126441843|ref|YP_001058607.1| OmpA family outer membrane protein [Burkholderia pseudomallei 668]
 gi|126221336|gb|ABN84842.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 668]
          Length = 236

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           MF      ++    +    L ++ + L     + +SI G+TD          N +LS  R
Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337
           A +    L+ +GV  D +    G       +  D    A        NRR++++
Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLAPNRRVEVV 229


>gi|84387079|ref|ZP_00990102.1| putative outer membrane protein [Vibrio splendidus 12B01]
 gi|84378154|gb|EAP95014.1| putative outer membrane protein [Vibrio splendidus 12B01]
          Length = 205

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +S+   P  +  ++++   L       I ++G+         A+ N +LS +RA  
Sbjct: 86  LFANNSTEINPVFLGQIRQMAAFLKRYEGTSIELQGYASKV---GNAKHNLKLSKERASH 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
             + L+ +G+   R++ I G     
Sbjct: 143 VRRALISNGIQPSRVN-IVGHGDSE 166


>gi|330875090|gb|EGH09239.1| OmpA family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 447

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|299773249|gb|ADJ38699.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P +   L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|224714291|gb|ACN62140.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P +   L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|209968928|gb|ACJ02825.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714287|gb|ACN62138.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P +   L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|126662707|ref|ZP_01733706.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
 gi|126626086|gb|EAZ96775.1| possible outer membrane protein [Flavobacteria bacterium BAL38]
          Length = 283

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 227 SIIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF---RN 279
            IID R   +  +F++ SS    +    L +I   L         I+GH   +P      
Sbjct: 155 RIIDDRIYLDHVLFERGSSQLTYKAKKELDRIALELHKYKNIHFEIQGHVCCTPTFQKEA 214

Query: 280 IARDNW--RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           I RD     LS++RA   Y   +   +S+ R++   G+ + +       ++   RR+++L
Sbjct: 215 IDRDTKKRELSINRAKRVYNYFLMKRISKTRMT-FKGYGNTQSLKKGSTLD---RRVELL 270

Query: 338 V 338
           +
Sbjct: 271 I 271



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 226 ISIIDQRN---TPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
           ISI  +     +  F+ +      E    V+  + ++     E + I G+ D    R   
Sbjct: 15  ISIAQEDEEVHSIFFEFNKFNLKEEQADAVVAFVSKIDTSRIESVQIFGYCDD---RGKD 71

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA----HHRLKIASDPMNSANRRIDIL 337
             N+ LS +RA +    L++ G+    I  + G         ++       S NRR+D++
Sbjct: 72  AYNYTLSTNRANTVKDKLIEKGIKSKIIITLEGKGRIMLDEDMQTNIPEARSKNRRVDVV 131

Query: 338 V 338
           V
Sbjct: 132 V 132


>gi|116050492|ref|YP_790689.1| hypothetical protein PA14_31620 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891473|ref|YP_002440340.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa LESB58]
 gi|254235540|ref|ZP_04928863.1| hypothetical protein PACG_01464 [Pseudomonas aeruginosa C3719]
 gi|115585713|gb|ABJ11728.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167471|gb|EAZ52982.1| hypothetical protein PACG_01464 [Pseudomonas aeruginosa C3719]
 gi|218771699|emb|CAW27473.1| putative ABC-type periplasmic phosphate-binding protein
           [Pseudomonas aeruginosa LESB58]
          Length = 464

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       E   + G  D  P  +  R    LS  RA 
Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + L + GVS     +I+GF       ++D       NRR+++ V
Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463


>gi|86141821|ref|ZP_01060345.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
 gi|85831384|gb|EAQ49840.1| OmpA family protein [Leeuwenhoekiella blandensis MED217]
          Length = 653

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+    L K+  V+  +   V+ IR HTD+   R     N  LS  RA S 
Sbjct: 545 FDFDRFNIRPDAAEELTKVLAVMESNPSLVVEIRSHTDS---RGNDAYNLSLSDKRAKST 601

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
              ++  G+   RIS   GF   +L          ++  +  NRR + +V
Sbjct: 602 ADWIVNRGIEPSRISG-EGFGETQLINDCGNGADCTEEQHQLNRRSEFIV 650


>gi|238757655|ref|ZP_04618839.1| Outer membrane protein A [Yersinia aldovae ATCC 35236]
 gi|238704160|gb|EEP96693.1| Outer membrane protein A [Yersinia aldovae ATCC 35236]
          Length = 350

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 222 KSDVLFAFNKSNLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 279 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|187735188|ref|YP_001877300.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425240|gb|ACD04519.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 439

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +       +   LQ + E +   S + + I GHTD        R N  LS  RA +
Sbjct: 329 FFGFNEDTLSKRSERQLQIVAEAIKMDSGKKLEISGHTDDV---GSERYNQGLSERRAAA 385

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK---------IASDPMNSANRRIDILVE 339
               L++ GV  +RI    GF   + +            D     NRR ++ ++
Sbjct: 386 VKAQLVQFGVPAERIV-TKGFGKSQPRRTYSPTADEETRDEARKENRRAEMYLD 438


>gi|54298967|ref|YP_125336.1| hypothetical protein lpp3034 [Legionella pneumophila str. Paris]
 gi|53752752|emb|CAH14187.1| hypothetical protein lpp3034 [Legionella pneumophila str. Paris]
          Length = 294

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +        LQ+I + +      +VI I GH D S       +N  +S  RA S
Sbjct: 190 FGVDSKLLSDADKAQLQRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294


>gi|298529977|ref|ZP_07017379.1| peptidoglycan-associated lipoprotein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509351|gb|EFI33255.1| peptidoglycan-associated lipoprotein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 200

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
             N   F   S     +    LQKI E +    E  + I GHTD    R  A  N  L  
Sbjct: 92  TANRIHFAFDSYELDADARSALQKISEHMKRFDELRLVIEGHTDE---RGTAEYNLALGE 148

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340
            RA +AY+ L+  GVS DR+  IS    + L   S+    + NRR +  V D
Sbjct: 149 RRARAAYEFLVLLGVSSDRLQIISYGEENPLVDESNESAWAQNRRAEFKVLD 200


>gi|219872299|ref|YP_002476674.1| outer membrane protein P5 , heat-modifiable outer membrane protein
           [Haemophilus parasuis SH0165]
 gi|219692503|gb|ACL33726.1| outer membrane protein P5 precursor, heat-modifiable outer membrane
           protein [Haemophilus parasuis SH0165]
 gi|253807583|gb|ACT36164.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|312270777|gb|ADQ55789.1| OmpA [Haemophilus parasuis]
 gi|312270779|gb|ADQ55790.1| OmpA [Haemophilus parasuis]
          Length = 371

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 251 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 307

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 308 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 366

Query: 342 Q 342
           +
Sbjct: 367 K 367


>gi|227821156|ref|YP_002825126.1| OmpA/MotB domain protein [Sinorhizobium fredii NGR234]
 gi|227340155|gb|ACP24373.1| OmpA/MotB domain protein [Sinorhizobium fredii NGR234]
          Length = 309

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 50/252 (19%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           + E +         +E  + +        +++    +  + +                +A
Sbjct: 58  KDEKDRIQRDIDAIAEIVEANGRPVVTATREMKDELERLRKLLNTPEKANKMEVYNSAVA 117

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             RK  L  L  +I+S + G+        V        +           +FD    +P 
Sbjct: 118 DARKNLLTSLKSEINSRIPGV-------NVAVSANYDAL-----QFAGDGLFDSGKEVPT 165

Query: 246 PETIVVLQKIGEVLAHSTE----------------------VISIRGHTDASPFRNIARD 283
               V +++I EVL  +                         + + GHTD+         
Sbjct: 166 TVGAVRMRQIAEVLDQNLGCYSLGSRRAFTENCNPAFALIDSLQVEGHTDSV---GSEVL 222

Query: 284 NWRLSLDRAYSAYQVLMKSGV--------SEDRISKISGFAHHRLKIASDPMNSA--NRR 333
           N  LS  RA S Y ++++            E  +  ++GF   R    ++  +    NRR
Sbjct: 223 NMDLSAKRAASIYALMIEQKPDLVLYQNRDEQPVLSVAGFGKGRPIQQNETESGRDANRR 282

Query: 334 ID---ILVEDRQ 342
           ID   I+V   +
Sbjct: 283 IDLRFIMVVPSK 294


>gi|227356660|ref|ZP_03841046.1| peptidoglycan-associated lipoprotein [Proteus mirabilis ATCC 29906]
 gi|227163168|gb|EEI48099.1| peptidoglycan-associated lipoprotein [Proteus mirabilis ATCC 29906]
          Length = 176

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 17/183 (9%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           GK + +  +++ +   +      PL      +  +     D +  +  T  G  A+ + +
Sbjct: 3   GKQIKEQLEMQLNKVFKGLMLALPLVAVAACSSNKNDDQTDTSNNVPVTEQGPTAEELAR 62

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272
             L +  +T I+           F         E   +L      L  +    I+I GH 
Sbjct: 63  QQLEQLKQTNIV----------YFGFDKYDVTSEYAQLLDAHAAFLRANPSVRITIEGHA 112

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSA 330
           D    R     N  L   RA +    L   GVS D++S +S +   +  +    +   + 
Sbjct: 113 DE---RGTPEYNIALGERRANAVKMYLQGKGVSADQLSIVS-YGKEKPAVLGHDEAAYAK 168

Query: 331 NRR 333
           NRR
Sbjct: 169 NRR 171


>gi|323143608|ref|ZP_08078285.1| peptidoglycan-associated lipoprotein [Succinatimonas hippei YIT
           12066]
 gi|322416671|gb|EFY07328.1| peptidoglycan-associated lipoprotein [Succinatimonas hippei YIT
           12066]
          Length = 181

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
              +      + NT  F+  S       + V+Q   + L  + +  I I GHTD    R 
Sbjct: 70  PEALR-----ENNTIYFNYDSDQIHDNYVGVMQAHAKYLRENPDAHIIIEGHTDE---RG 121

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               N  L   RA S  + +   GV  +++S +S +   +  +     N  + NRR  I
Sbjct: 122 TPEYNIALGERRARSVARYMQNLGVDVNQLSIVS-YGEEKPLVVGHNENAWAKNRRAVI 179


>gi|116048976|ref|YP_792222.1| hypothetical protein PA14_50810 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390590|ref|ZP_06880065.1| hypothetical protein PaerPAb_20651 [Pseudomonas aeruginosa PAb1]
 gi|115584197|gb|ABJ10212.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 293

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +P T+  L K+ ++        I + GHTD++        N +LS +RA S   +   S
Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           G+  D++ ++ G      +   AS    + NRR+++L   R
Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283


>gi|300023927|ref|YP_003756538.1| peptidoglycan-associated lipoprotein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525748|gb|ADJ24217.1| peptidoglycan-associated lipoprotein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 171

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S    PE    L K  + L   +   I+I GH D    R     N  L   RA + 
Sbjct: 62  FSTDSIDLTPEAQQTLSKQAQWLQQYSQYAITIEGHADE---RGTREYNIALGARRATTV 118

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
              L + G++  RI  IS +   R     + ++  S NRR
Sbjct: 119 RNFLSQHGINGARIRTIS-YGKERPVAVCNDISCWSQNRR 157


>gi|152993089|ref|YP_001358810.1| hypothetical protein SUN_1502 [Sulfurovum sp. NBC37-1]
 gi|151424950|dbj|BAF72453.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 405

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 34/203 (16%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK---------ISSTLSGLVAD 209
           + +D+ +++ +++   L  L+       K    +++L K+         I   +   + +
Sbjct: 192 QLSDVNETVQEKDKKLLELLNALDEKETKYDTLVENLQKQKAKIKSLTGIKLKVIAALKE 251

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-----IGEV-----L 259
            +   +  +     + +S     +  +FDK S++   E    L+K     IG +     +
Sbjct: 252 ALGDKIDIDKKSGSLRLS-----SNILFDKGSAVLKDEAKAQLKKAFEEYIGTLVTNPKI 306

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------KSGVSEDRISKIS 313
               + I I GHTD+         N  LS  RA++    L+      K  +    I+   
Sbjct: 307 KPHLDKIIIEGHTDS---DGGYLYNLDLSQRRAFAVMHYLLTLDFAKKYNLQPLMIASGR 363

Query: 314 GFAHHRLKIASDPMNSANRRIDI 336
            +         +  +++ RRI+I
Sbjct: 364 SYLDAIKVNGVEDKDAS-RRIEI 385


>gi|16127724|ref|NP_422288.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|221236545|ref|YP_002518982.1| cell surface antigen Sca2 [Caulobacter crescentus NA1000]
 gi|13425220|gb|AAK25456.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|220965718|gb|ACL97074.1| cell surface antigen Sca2 [Caulobacter crescentus NA1000]
          Length = 449

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S+  PE   V+ +  +         I + GHTD        + N +LS  RA + 
Sbjct: 347 FPFDQSVLTPEAQSVVTEAAKYSNDGKATKIIVVGHTDT---SGSPKYNAKLSERRARAV 403

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
              L+  GVS++ +  +         +A+        NRR  I +
Sbjct: 404 ADALVSQGVSQN-VLGVDWKGESAPAVATGDGVKEPLNRRSTISI 447


>gi|238785957|ref|ZP_04629921.1| Outer membrane protein A [Yersinia bercovieri ATCC 43970]
 gi|238713147|gb|EEQ05195.1| Outer membrane protein A [Yersinia bercovieri ATCC 43970]
          Length = 350

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S   PE    L ++   L+        + + G  D          N  LS
Sbjct: 222 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  ++I+   G         +      P  +       +RR++I 
Sbjct: 279 QRRADSVRDYLVSKGIPAEKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 337

Query: 338 VE 339
           V+
Sbjct: 338 VK 339


>gi|121582538|ref|YP_974070.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|120608596|gb|ABM44335.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
          Length = 347

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 11/197 (5%)

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
             + K   L  +    ++  K      P +  +          +   A  I +  + L  
Sbjct: 153 APTPKTPMLGSTDAAPEATGKAAARPQPSVLVKLDAHTVATLAMPAEADAIPAGSAQLTD 212

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           D  V+ V    +   +   + +  +TP+    F  + +I   +    L ++   LA   E
Sbjct: 213 D--VQPVTVIASGPSVTTPVTETASTPLRSIPFPSAVAILNDDAKRGLSELLP-LAMKAE 269

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + IRG TD++        N  L++ RA +        GV   ++              +
Sbjct: 270 RVFIRGRTDST---GTVAGNRALAIARAATVRAAFASGGVDPRKLKVSYCVTCFVASNDT 326

Query: 325 DPMNSANRRIDI-LVED 340
           +   SANRR+++ LV  
Sbjct: 327 EAGRSANRRVEVELVMP 343


>gi|94501021|ref|ZP_01307545.1| peptidoglycan-associated lipoprotein, putative [Oceanobacter sp.
           RED65]
 gi|94426768|gb|EAT11752.1| peptidoglycan-associated lipoprotein, putative [Oceanobacter sp.
           RED65]
          Length = 180

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S   PE   VL    E L  + +  +++ GH D    R     N  L   RA + 
Sbjct: 77  FGFDRSELRPEFKDVLNAHAEYLVANPQASLTVEGHCDE---RGTVEYNLALGERRAETV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341
            + L+  GV+  ++  +S +   R  +  + +   S NRR ++  ++R
Sbjct: 134 KRYLIVQGVAPSQLETVS-YGEERPAVMGSDESAWSKNRRAELDYQNR 180


>gi|85375617|ref|YP_459679.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594]
 gi|84788700|gb|ABC64882.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594]
          Length = 367

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   PE   +L   +       T  + + GH D          N  LS  R  S
Sbjct: 260 FFNWDESNITPEAATILNNAVTAYANCGTASVMLAGHADR---SGPQTYNVGLSQRRNAS 316

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             + L   G+ + RIS    F   + ++ +        NRR++I
Sbjct: 317 VREYLNGRGIPDARISS-EAFGESQPRVPTADGVRELQNRRVEI 359


>gi|294508280|ref|YP_003572338.1| Motility protein B [Salinibacter ruber M8]
 gi|294344608|emb|CBH25386.1| Motility protein B [Salinibacter ruber M8]
          Length = 181

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEV-ISIRGHTDASPF----RNIARDNWRLSLD 290
           F   S+         L +    +          I+G+TD  P     ++    NW LS  
Sbjct: 68  FPSGSAWIPDRGRRRLDEHAATIKDEYPNAGFRIQGYTDPVPIGPSLQDTYPSNWYLSAQ 127

Query: 291 RAYSAYQVL 299
           RA +    L
Sbjct: 128 RAAAVAHYL 136


>gi|114319403|ref|YP_741086.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225797|gb|ABI55596.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 184

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 228 IIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280
           ++D    P+      FD   S    E + V++     L+   +  ++I GHTD    R  
Sbjct: 67  LMDDPEGPLSRQTVYFDFDRSEIRNEDMPVIEAHARFLSGHPDRRMTIEGHTDE---RGS 123

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
              N  L   RA +  ++++ +GV ED++  ++ +         +++     NRR +++
Sbjct: 124 REYNLALGERRAEAVKRIMVLNGVDEDQLE-VTSYGEENPVALGSNEEAWQQNRRAELI 181


>gi|261822111|ref|YP_003260217.1| outer membrane protein A [Pectobacterium wasabiae WPP163]
 gi|261606124|gb|ACX88610.1| OmpA domain protein transmembrane region-containing protein
           [Pectobacterium wasabiae WPP163]
          Length = 361

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +    E    L ++   L+        + + G TD        + N  LS
Sbjct: 233 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQALS 289

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  +++S   G    +    S      P  +       +RR++I 
Sbjct: 290 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 348

Query: 338 VE 339
           V+
Sbjct: 349 VK 350


>gi|289207539|ref|YP_003459605.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943170|gb|ADC70869.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 315

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S          + +  E L       + + G TDA         N RLS  RA + 
Sbjct: 182 FATGSRELDSRGRETVARAAETLRTVERPRVRLVGLTDAE---GPRELNERLSRQRAEAV 238

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L+++GV  D ++  +G         +D     +RR+DI
Sbjct: 239 RAALVEAGVPGDGLTVEAGGVDPE----ADGEREGSRRVDI 275


>gi|309783317|ref|ZP_07678027.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
 gi|308917861|gb|EFP63548.1| OmpA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 351

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  S +    E    L ++   LA + E + IRG TD++        N  L++ RA +  
Sbjct: 243 FSSSVANLNDEAKRSLSELLP-LAMTAERVLIRGRTDST---GTVAGNRALAIARAATVR 298

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI-LVED 340
               + GV   ++              ++   SANRR+++ LV  
Sbjct: 299 AAFARGGVDPRKLKVSYCVTCFVASNDTEAGRSANRRVEVELVMP 343


>gi|110589616|gb|ABG77310.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 286

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 217 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 273

Query: 293 YSAYQVLMKS 302
            S    L+  
Sbjct: 274 NSVKSALVNE 283


>gi|269123033|ref|YP_003305610.1| OmpA/MotB domain-containing protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314359|gb|ACZ00733.1| OmpA/MotB domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 367

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 22/198 (11%)

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201
               S     E G  L  S    K  +K     + P+  ++        ++++L  KI  
Sbjct: 192 GANASFNSRLEVGAGLGMSYTFGKDDDKPVLNAVEPIVIKEDDG-----KIRELENKIE- 245

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            +  ++ +N+ K    E         I +      FD        E   ++  +   L  
Sbjct: 246 -MLTMLINNMDKNRDKE---------IKEIYFISGFDSGKFTLKQEHKNIIDSLISGLKD 295

Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
             + I + G+TD        + N  L L+RA S    L   GV     ++ +GF      
Sbjct: 296 --KEIIVVGYTDTD---GTDKYNLNLGLNRAKSVKIYLENKGVKVKE-TRSAGFNELIRD 349

Query: 322 IASDPMNSANRRIDILVE 339
             +    + NRR++I+V+
Sbjct: 350 NKTSENKALNRRVEIMVK 367


>gi|307256515|ref|ZP_07538296.1| hypothetical protein appser10_5200 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864925|gb|EFM96827.1| hypothetical protein appser10_5200 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 283

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  E + + G+TD        + N  LS  R
Sbjct: 141 GDFLFDFDKDTLTAKGKDVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR+++
Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249


>gi|15596245|ref|NP_249739.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
 gi|218892990|ref|YP_002441859.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|254234184|ref|ZP_04927507.1| hypothetical protein PACG_00018 [Pseudomonas aeruginosa C3719]
 gi|254239405|ref|ZP_04932727.1| hypothetical protein PA2G_00018 [Pseudomonas aeruginosa 2192]
 gi|313105999|ref|ZP_07792260.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
 gi|9946962|gb|AAG04437.1|AE004537_2 probable outer membrane protein precursor [Pseudomonas aeruginosa
           PAO1]
 gi|126166115|gb|EAZ51626.1| hypothetical protein PACG_00018 [Pseudomonas aeruginosa C3719]
 gi|126192783|gb|EAZ56846.1| hypothetical protein PA2G_00018 [Pseudomonas aeruginosa 2192]
 gi|218773218|emb|CAW29030.1| probable outer membrane protein precursor [Pseudomonas aeruginosa
           LESB58]
 gi|310878762|gb|EFQ37356.1| putative outer membrane protein precursor [Pseudomonas aeruginosa
           39016]
          Length = 293

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +P T+  L K+ ++        I + GHTD++        N +LS +RA S   +   S
Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           G+  D++ ++ G      +   AS    + NRR+++L   R
Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283


>gi|329755858|gb|AEC04326.1| outer membrane protein A [Pasteurella multocida]
          Length = 348

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIPVKGNK 348


>gi|329755842|gb|AEC04318.1| outer membrane protein A [Pasteurella multocida]
 gi|329755852|gb|AEC04323.1| outer membrane protein A [Pasteurella multocida]
          Length = 358

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIPVKGNK 358


>gi|192360106|ref|YP_001981638.1| OmpA family protein [Cellvibrio japonicus Ueda107]
 gi|190686271|gb|ACE83949.1| OmpA family protein [Cellvibrio japonicus Ueda107]
          Length = 576

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S     +++  L+++ + +  ++ + + + G +D+        +N  LSL RA   
Sbjct: 477 FKDGSDQLDSKSLSDLERLVKYVEVNAPKRLQLFGFSDSE---GDKHENLALSLRRAKVV 533

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
              L+K G+         G        +SD       NRR+++ + 
Sbjct: 534 EDHLIKRGIYP---LVAKGMGDEAPLASSDTEAGRHINRRVEVWIL 576


>gi|129141|sp|P04845|OMPA_SERMA RecName: Full=Outer membrane protein A; Flags: Precursor
 gi|758300|emb|CAA25254.1| ompA protein [Serratia marcescens]
          Length = 359

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 27/135 (20%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S    E    L ++   L+        + + G+TDA       + N +LS
Sbjct: 229 KSDVLFNFNKSTLKAEGQQALDQLYTQLSSMDPKDGSVVVLGYTDAV---GSDQYNQKLS 285

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-------------NSANRRID 335
             RA S    L+  G+  D+IS   G         +                 + +RR++
Sbjct: 286 EQRAQSVVDYLVSKGIPSDKISA-RGMGEADAVTGNTCGYKSGRATKAQIVCLAPDRRVE 344

Query: 336 I-------LVEDRQG 343
           I       +V   QG
Sbjct: 345 IEVKGIKDVVTQPQG 359


>gi|110806727|ref|YP_690247.1| putative outer membrane lipoprotein [Shigella flexneri 5 str. 8401]
 gi|110616275|gb|ABF04942.1| putative outer membrane protein [Shigella flexneri 5 str. 8401]
          Length = 160

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A       +  G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWVIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|89076013|ref|ZP_01162376.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
 gi|89048248|gb|EAR53829.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
          Length = 355

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S          L  I + L  + E  + + GHTD+   +     N +LS +RA   
Sbjct: 237 FAFDSYKITHADKERLAPIAKRLQDNPETELVVVGHTDS---KGAEAYNQKLSEERAQKV 293

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              LM +  +   R+ +  G        ++        NRR+D+
Sbjct: 294 ATFLMNEYNLDSSRV-RAEGRGELNPVASNKTEAGRTDNRRVDV 336


>gi|254466910|ref|ZP_05080321.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206687818|gb|EDZ48300.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 192

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I GHTD+   R     N  LS  RA +  QV   +G     ++ I  +     ++ +   
Sbjct: 124 IAGHTDS---RASDEYNIGLSQRRANAVAQVARSAG---AHVNDIRAYGEREPQVPNTSA 177

Query: 328 N--SANRRIDI 336
              + NRR++I
Sbjct: 178 ANMAKNRRVEI 188


>gi|29829787|ref|NP_824421.1| secreted protein [Streptomyces avermitilis MA-4680]
 gi|29606896|dbj|BAC70956.1| putative secreted protein [Streptomyces avermitilis MA-4680]
          Length = 226

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           T ++             + +  +       +  ++ G        +  S   + +   P 
Sbjct: 4   TPRRATATATATATTLTALAVLATLTLTVPSAVADDGDPSAPPGSVTTSPPPDVDANSPG 63

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           L       +   K L      I S +  L  +   +    + T           +   +F
Sbjct: 64  LKLADGATLAPAKVLD-----IKSVVEDLGGEERREDTNADVT--------FALQAEVLF 110

Query: 238 DKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
            K S    PE    +  I  E+   +   + + G TD             LS  RA + +
Sbjct: 111 PKDSPKLNPEARSRINAIADEIKKQNATNVRVFGFTDNL---GSYAHGLTLSKKRAEAVH 167

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
             L  +  S+D   ++ G++       +  +     NRR+++
Sbjct: 168 DQLASALGSQDVTFEVRGYSEDYPIADNTSEQGRRKNRRVEV 209


>gi|256820385|ref|YP_003141664.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581968|gb|ACU93103.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 397

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 78/241 (32%), Gaps = 13/241 (5%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P+    N+I   +D  +  NS       T      Q  + N F L+        K     
Sbjct: 148 PQLRISNRIAFLLDASMYINSKQQLTYDTKSANGQQGFQGNHFTLTAGLNIALGK---HG 204

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
                    K  +LE+   +  N        +  +A K+ K        +   +   + D
Sbjct: 205 KHADWAAASKKDELEEVAQRVANLENNVADLKSEVANKQNKMNDANGNNVPDEIESYLND 264

Query: 210 NIVKGVLF----ETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
           N           E     +   +I +      FD +SS P   +   +  + + +  +  
Sbjct: 265 NYKAKDKVGENGEVKDDDVAADLIRKGYINAYFDFNSSKPQISSSWAVDFVAKYMKSNPN 324

Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I+I G+ D        + N  LS  RA +   +L+K+G+   RI+   G         
Sbjct: 325 AHININGYADEL---GGTQYNQTLSQKRADAVKDLLVKAGIDGSRITA-EGKGVDASVDK 380

Query: 324 S 324
           +
Sbjct: 381 N 381


>gi|300024245|ref|YP_003756856.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526066|gb|ADJ24535.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 602

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRN 279
            I + D      F+  S    P     L+++      V++ +   +  I G+TDA     
Sbjct: 447 RIDLDDIN----FEFGSWEVDPGEYRKLERVARAMKRVISRNPNEVFMIEGYTDAV---G 499

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              DN  LS  RA S  +VL +            G+    LK+ +      NRR+ +
Sbjct: 500 SQEDNLSLSDRRAESVAEVLTEEFQVPFENLVTQGYGEDYLKVPTQAAERLNRRVAV 556


>gi|189424872|ref|YP_001952049.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ]
 gi|189421131|gb|ACD95529.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ]
          Length = 185

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S    ++  +L K  + L        I I GH D    R     N  L   RA +
Sbjct: 82  FDFDRSDLRQDSRDMLTKNAQALMKDLVDSKIKIEGHCDE---RGSDEYNLALGDRRAKA 138

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
               L+  GV +DRIS +S G     ++ + +   S NRR + ++
Sbjct: 139 VATYLITLGVKQDRISTVSFGKEKPAMQGSDETAWSKNRRAEFVI 183


>gi|146298734|ref|YP_001193325.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153152|gb|ABQ04006.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 267

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH--HRLKIA 323
           I I G+ D    R     N+RLS DR  +   +L+ SG  E +I  + G      R    
Sbjct: 57  IQIYGYCDD---RGTDDYNFRLSHDRVNTIQNLLVSSGFKESKIVILEGKGRVVVRPDTV 113

Query: 324 SD--PMNSANRRIDILVEDR 341
            +       NRR+D++V  R
Sbjct: 114 ENLYETRLRNRRVDLIVVKR 133



 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP--FRNI-ARDNWR-- 286
            + +FD  S+     +   L KI   L         IRGH   +P  + +   +D     
Sbjct: 157 ESILFDMGSARLTHNSKRELDKIALTLLKQKNIQFEIRGHVCCTPEIYSDGIDKDTKERR 216

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           LS +RA + +  L    VS++R+ +  G  +       D  +   RR++ L+
Sbjct: 217 LSWNRAKNVFNYLSSKKVSKNRM-RYQGCGNKFPLRMGDNYD---RRVEFLI 264


>gi|301026373|ref|ZP_07189819.1| OmpA family protein [Escherichia coli MS 69-1]
 gi|300395559|gb|EFJ79097.1| OmpA family protein [Escherichia coli MS 69-1]
          Length = 160

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|269122960|ref|YP_003305537.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268314286|gb|ACZ00660.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2078

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL----ISIIDQRNTPM--FDK 239
            +++ ++L +  KK+      L  +N   G   +  R  I     I + +     +  +  
Sbjct: 1917 IEQNEKLINQNKKLEEDNDRLRRENDRIGDEIKELRERIKAIEKIKMNEDDLYTLDGYRL 1976

Query: 240  SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                       +L  I   L  +     I I G+TD     +    N  L L RA    +
Sbjct: 1977 GIHELTKSQEEMLMNIVRELNENYKNRKIYITGYTDNV---SGENLNLELGLKRANVVAK 2033

Query: 298  VLMKSGVSED---RISKISGFAHHRLKIASDPMNSANRRIDI 336
             L + G+      R    SG+ +      S    S+NRR++I
Sbjct: 2034 KLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRSSNRRVEI 2075


>gi|254463781|ref|ZP_05077192.1| OmpA domain protein [Rhodobacterales bacterium Y4I]
 gi|206684689|gb|EDZ45171.1| OmpA domain protein [Rhodobacterales bacterium Y4I]
          Length = 310

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+         L ++ E LA +    + + GHTD          N  +S  RA S 
Sbjct: 206 FESGSTRLREGRYDSLVQLAEYLAANPEYRLLLVGHTDTV---GSQEQNAGISERRAQSV 262

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            + L+++  +E+    ++G        ++       ANRR++ ++ 
Sbjct: 263 KERLIEAYGAEESQIGVAGAGFLAPIASNLTPEGREANRRVEAVLL 308


>gi|157962338|ref|YP_001502372.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157847338|gb|ABV87837.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 249

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
           +   L    ++ +   +    L +L+ +       L    + +         G+ +    
Sbjct: 78  QQTMLSEQEQQVVALNQENTSLVELSDQYEQAQQQLTTLKMAQEQKLTELALGLNVQ--- 134

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
                 F   SS+  P     L  I   ++ S E  + + G+ D    R  +  N  LS 
Sbjct: 135 ------FKTGSSVIEPHFQQQLNDIAYAMSLSPELTLDLTGYADR---RGDSDYNQALSE 185

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDILVEDR 341
            R       L + GV E+R+     F      +A    N  N    RR+ + ++++
Sbjct: 186 QRVAEVKNYLTEQGVEEERLHN-QAFGDSSPLMAE--QNFENDFFDRRVTLKLQNQ 238


>gi|296108643|ref|YP_003620344.1| hypothetical protein lpa_04343 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650545|gb|ADG26392.1| Hypothetical protein lpa_04343 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 294

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +        L++I + +      +VI + GH D S       +N  +S  RA S
Sbjct: 190 FGVDSKLLSDADKAQLRRIAQYVDADVQIDVIKVIGHADDS--GRKGYNN-AISQYRAES 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294


>gi|94496180|ref|ZP_01302758.1| OmpA/MotB [Sphingomonas sp. SKA58]
 gi|94424359|gb|EAT09382.1| OmpA/MotB [Sphingomonas sp. SKA58]
          Length = 172

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F         E    LQ     L  +    ++I GH D    R     N  L   R
Sbjct: 65  DRIFFGLDQYDVDAEDQATLQSQAAWLQQNPSVRVTIEGHADE---RGTRDYNIALGERR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339
           A +A   L   G+   RI+ +S        + SD    + NRR + + ++
Sbjct: 122 ANAAKNYLASLGIDPGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTIQ 171


>gi|184216035|gb|ACC77464.1| outer membrane protein [Lawsonia intracellularis]
          Length = 340

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S         + ++   ++  + +  + + G TD++        N RLS +RA + 
Sbjct: 239 FAFDSFALDDTAKAISEETVRLIRANPDFNVRLLGWTDST---GPDAYNLRLSQERADAV 295

Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDIL 337
              L+K G+  +R+    G    ++   A+      NRR +++
Sbjct: 296 KNFLVKMGIPSNRLFA-KGMGKSYQYNNATKEGRYMNRRTELV 337


>gi|332999380|gb|EGK18965.1| ompA family protein [Shigella flexneri VA-6]
          Length = 160

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   LQ +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQLQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|319902641|ref|YP_004162369.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319417672|gb|ADV44783.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 386

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 8/158 (5%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
             +        +     +++   + L         +   T+  +    +       F   
Sbjct: 235 SNVDEDALNAEINKYRSELAQAQADLANAKNALANVKPETKEVVKEVQVAGPRAIFFKIG 294

Query: 241 SSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           S+       V ++   +VL  +  +   I G+ D +     A  N +LS  RA + Y  L
Sbjct: 295 SAKIDDYGKVNIELAAKVLKANSDKKYKIAGYADKA--TGSASWNQKLSEKRAQAVYDAL 352

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +  GV +D++  + GF         + +N    R+ IL
Sbjct: 353 IAQGVDKDQLELV-GFGGTENMFGKNFLN----RVVIL 385


>gi|260550726|ref|ZP_05824934.1| small protein A [Acinetobacter sp. RUH2624]
 gi|260406232|gb|EEW99716.1| small protein A [Acinetobacter sp. RUH2624]
          Length = 260

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD+S +  + + +  +  + + +  S     I + G  D  P    +  N  LS  RA +
Sbjct: 153 FDRSDASAIQQGLNNIDNVVDQIKQSPSTAPIIVSGFAD--PLGKFSY-NQELSSKRANT 209

Query: 295 AYQVLMKSGVSEDRI-----------SKISGFAHHRLKIASDPMNSANRRIDI 336
             ++L+K GV  +RI            + SG  + +L     P    NRR++I
Sbjct: 210 VAKLLVKQGVDPNRIQIHANSQTDLYQQCSGGHNSQLIQCLAP----NRRVNI 258


>gi|58422901|gb|AAW73250.1| OmpA [Enterobacter cloacae]
          Length = 223

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +   PE    L ++   L++       + + G TD     + A  N +LS
Sbjct: 115 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQKLS 171

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             RA S    L+  G+  ++IS   G         +
Sbjct: 172 EKRAQSVVDYLISKGIPANKISP-RGMGESNPVTGN 206


>gi|296282485|ref|ZP_06860483.1| hypothetical protein CbatJ_02635 [Citromicrobium bathyomarinum
           JL354]
          Length = 305

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 13/167 (7%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-----TPMFDKS 240
           + ++  ++D   K ++ +         +         G  ++ ID  N        FD  
Sbjct: 137 IAQRISMKDSDLKTAAMIQRGTEQGFAEQTAATEALRG-RVADIDNYNVKGTTNVYFDTG 195

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
                 +    L             +  + G+TD++        N  LS  RA      L
Sbjct: 196 EYKLSGQAQAELCSAAAQADQMDNALLLVVGYTDST---GSYEINQELSEKRAERVVNYL 252

Query: 300 MKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            +  G    R+   +G A        ++D     NRR+ + +   + 
Sbjct: 253 QQQCGWKPYRMLTPTGMAQADPVADNSTDYGKQQNRRVAVNILVSKA 299


>gi|254495661|ref|ZP_05108581.1| outer membrane protein [Legionella drancourtii LLAP12]
 gi|254355112|gb|EET13727.1| outer membrane protein [Legionella drancourtii LLAP12]
          Length = 235

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
                MF+  S          LQ I  +L    E  + + G TD     +  +   RLS 
Sbjct: 110 TDKYFMFE--SPRLNEINYKGLQNIIALLRLYPESHVYVAGFTDNVGTEDHKK---RLSQ 164

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDI 336
            +A S    L  +G+   R+ K  G+   +  +A +     ++ NRRI+I
Sbjct: 165 AQAESMMTYLWANGIQAQRL-KPEGYGD-KNTVADNALIHGSAMNRRIEI 212


>gi|317402473|gb|EFV83041.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans
           C54]
          Length = 166

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285
           SI+ Q+ +  FD  S     +   +++     LA H  + I I G+TD    R  A  N 
Sbjct: 54  SILAQQRSVYFDFDSYTVSDQYRGLVETHARYLASHQQQKIKIEGNTDE---RGGAEYNL 110

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            L   RA +  +++   GVS+++I  IS G    +   +S+   + NRR DI+
Sbjct: 111 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRADIV 163


>gi|255035472|ref|YP_003086093.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM
           18053]
 gi|254948228|gb|ACT92928.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053]
          Length = 314

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F++S++     +   L KI   L+   +  I++  HTD        + N RL+ +RA   
Sbjct: 211 FEQSTTNLSKSSTKNLSKILNCLSENRSVKITLESHTDNV---GDLKKNLRLAEERAARI 267

Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
            Q L+ + +SE RI  +I G         ++   S NRRI + V+
Sbjct: 268 RQYLVDNKISESRIQCRILGPLLPLAPNNNEYNRSLNRRIVVKVQ 312


>gi|90412653|ref|ZP_01220655.1| hypothetical protein P3TCK_08471 [Photobacterium profundum 3TCK]
 gi|90326461|gb|EAS42873.1| hypothetical protein P3TCK_08471 [Photobacterium profundum 3TCK]
          Length = 208

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 211 IVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267
           +   + +  T     +L  + +Q++   FD  +     +   +L  I   L  H    + 
Sbjct: 67  VTDSITYTATPDASILLAQLPEQKDVIYFDNMNYELSVKNQQLLDPIALRLKLHLDSYLI 126

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           + GH+D         +N  LS +RA+S    +    G+ E+RI +I       L    + 
Sbjct: 127 VIGHSDD---AGSKEENLVLSFERAFSVAIYISSVFGIEEERI-QIVALGDDELISNGNS 182

Query: 327 M--NSANRRIDIL 337
                 NRR++++
Sbjct: 183 EQERQLNRRVEVI 195


>gi|261867947|ref|YP_003255869.1| Plp4 [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413279|gb|ACX82650.1| Plp4 [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 274

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        +   V+ K+   L  S  + + + G+TD          N  LS  RA  
Sbjct: 144 LFDFDKDTLTVKGREVVDKVAAQLKESKAQEVKVAGYTDRL---GSKVYNMDLSQRRADR 200

Query: 295 AYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSA-------NRRIDI 336
               L++ G+   +I+ + G+   H+++  ++  +S        NRR++I
Sbjct: 201 VKNRLIEQGID-VQINAV-GYGEAHQVQACNNVKSSQLISCLRPNRRVEI 248


>gi|156976391|ref|YP_001447297.1| hypothetical protein VIBHAR_05164 [Vibrio harveyi ATCC BAA-1116]
 gi|156527985|gb|ABU73070.1| hypothetical protein VIBHAR_05164 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S   PE +  L      L      I + GHTD     +++  N +L+  RA 
Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEQLAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333
           +    L         + ++  F   +  I  +    N+ NRR
Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286



 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S       V L      +   +  I+I GHTD   F+     N +LS+ RA S  
Sbjct: 62  FDFDKSFIREADAVSLDVFIRNIQGLSGRITIVGHTD---FKGSDEYNDKLSMRRAESVE 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             L +    E    ++  F   +      SD   + NRR
Sbjct: 119 AYLQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRR 157


>gi|53712971|ref|YP_098963.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
 gi|60681183|ref|YP_211327.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|253563051|ref|ZP_04840508.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5]
 gi|265763068|ref|ZP_06091636.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16]
 gi|52215836|dbj|BAD48429.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
 gi|60492617|emb|CAH07389.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|251946827|gb|EES87109.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5]
 gi|263255676|gb|EEZ27022.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16]
 gi|301162672|emb|CBW22219.1| putative outer membrane protein [Bacteroides fragilis 638R]
          Length = 372

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     +++   S L         +   T+  +    +       F  
Sbjct: 220 GSQVDQNAINEELNRYRSELAKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAIFFQI 279

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    + G+ D +     A+ N +LS  RA + Y  
Sbjct: 280 GKSKIDDYGMVNIQLAAKILKANPDKKYKVAGYADKA--TGSAKWNQKLSEARAQAVYDA 337

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 338 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 371


>gi|300727149|ref|ZP_07060568.1| putative immunoreactive 42kD antigen PG33 [Prevotella bryantii B14]
 gi|299775693|gb|EFI72284.1| putative immunoreactive 42kD antigen PG33 [Prevotella bryantii B14]
          Length = 382

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 14/152 (9%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           + +L  L  ++    +    + +   +  + +     +       +  F+   +      
Sbjct: 240 QSQLDALNSQLED--ANAENERLRGELEAKQSNQTSSVVYKSAPVSVFFNIGKTKIASSK 297

Query: 249 IVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +V L+   +    +   I + G+ D+      A  N +LS  RA +  + L+K GV + 
Sbjct: 298 DMVNLESFAKSAKENNNKILVTGYADSK--TGSAEYNQKLSQSRADAVVEALVKFGVDKS 355

Query: 308 RI-SKISGFAHHRLKIASDPMNSANRR--IDI 336
            I ++  G       + +      NRR  ++I
Sbjct: 356 MITTQAKGGVDDLSPVDN------NRRATVEI 381


>gi|262396480|ref|YP_003288333.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp.
           Ex25]
 gi|262340074|gb|ACY53868.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp.
           Ex25]
          Length = 339

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD    +   +    L  +   ++       I I GHTD       +  N  +S  RA  
Sbjct: 211 FDFGQKVLSRKQQETLAALNSYVSVDDRVTKILIDGHTDNV---GSSLANLSVSRTRAEQ 267

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             + L++ G+ +  + +           +++     + NRR+ +
Sbjct: 268 VAEALVELGIDKS-MIETRAHGSRYPIASNNSTKGQAKNRRVTL 310


>gi|74318223|ref|YP_315963.1| outer membrane protein, porin-associated lipoprotein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057718|gb|AAZ98158.1| outer membrane protein, porin-associated lipoprotein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 188

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289
            + +  FD  S +   E   VL+     LA      I+++G+ D    R     N  L  
Sbjct: 79  SKRSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGNADE---RGSREYNLALGQ 135

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            RA +  + L   GVS+ ++  IS F   + +  +D     + NRR DI+
Sbjct: 136 KRAEAVRKALAVLGVSDAQMEAIS-FGEEKPRNEADTEEAYAENRRTDIV 184


>gi|296283270|ref|ZP_06861268.1| hypothetical protein CbatJ_06596 [Citromicrobium bathyomarinum
           JL354]
          Length = 168

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           +  ++ +N   FD             LQ   + ++    + ++I GH D    R     N
Sbjct: 55  VRAVNGQNVIYFDTDRYNIDTADAAALQTQAQYMSQYPNITVTIEGHADE---RGTREYN 111

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
             L   RA SA   L+  G++ +RI  +S      +  AS P   + NRR + ++V
Sbjct: 112 LALGERRANSAKNYLVSLGIAANRIRTVSYGEERPVATASTPEAWAKNRRAVTVVV 167


>gi|284922551|emb|CBG35638.1| outer membrane lipoprotein [Escherichia coli 042]
          Length = 160

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|134288289|ref|YP_001110452.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132939|gb|ABO59649.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4]
          Length = 202

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 15/117 (12%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G  + +  + N       S+IP       L  I          I + GH D      
Sbjct: 93  TEQGNRVVLHYRFN-------SAIPTSWA--PLSSIVTRARGDDSPIKVVGHADEV---G 140

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               N RLS+ RA +    L+  GV+ +RI    G              + NRR+ I
Sbjct: 141 GDDYNQRLSVRRATAVSNYLVAKGVARNRIES-EGHGKREPVSPG--AGAQNRRVVI 194


>gi|303250252|ref|ZP_07336452.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307252017|ref|ZP_07533917.1| hypothetical protein appser6_5360 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650868|gb|EFL81024.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306860486|gb|EFM92499.1| hypothetical protein appser6_5360 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 283

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  E + + G+TD        + N  LS  R
Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR+++
Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249


>gi|126207944|ref|YP_001053169.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae L20]
 gi|165975919|ref|YP_001651512.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190149806|ref|YP_001968331.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307245299|ref|ZP_07527387.1| hypothetical protein appser1_5040 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254248|ref|ZP_07536089.1| hypothetical protein appser9_4990 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258710|ref|ZP_07540442.1| hypothetical protein appser11_5080 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260944|ref|ZP_07542627.1| hypothetical protein appser12_5120 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263126|ref|ZP_07544747.1| hypothetical protein appser13_5480 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096736|gb|ABN73564.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876020|gb|ABY69068.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189914937|gb|ACE61189.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306853640|gb|EFM85857.1| hypothetical protein appser1_5040 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862795|gb|EFM94748.1| hypothetical protein appser9_4990 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867061|gb|EFM98917.1| hypothetical protein appser11_5080 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869356|gb|EFN01150.1| hypothetical protein appser12_5120 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871488|gb|EFN03211.1| hypothetical protein appser13_5480 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 283

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  E + + G+TD        + N  LS  R
Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR+++
Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249


>gi|110638196|ref|YP_678405.1| outer membrane protein 3a [Cytophaga hutchinsonii ATCC 33406]
 gi|110280877|gb|ABG59063.1| outer membrane protein 3a [Cytophaga hutchinsonii ATCC 33406]
          Length = 903

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S   PE    L ++      + +  I +  +TD          N  LS  R  +A
Sbjct: 564 FDFNQSDLRPEAKKTLDELAAYSNKNPQIQIELNANTDGL---GTDTYNRALSEKRGQAA 620

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339
              L+  GV   RI   +     R   ++D       NRR++  + 
Sbjct: 621 IDYLIGKGVDHSRIVM-NPLGKERPLTSNDNEVGRQLNRRVEFYIL 665


>gi|94497343|ref|ZP_01303914.1| OmpA/MotB [Sphingomonas sp. SKA58]
 gi|94423206|gb|EAT08236.1| OmpA/MotB [Sphingomonas sp. SKA58]
          Length = 358

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   P+   +L   +    +  +  + + GH D       A  N  LS  RA S
Sbjct: 251 FFEWDKSDITPDAATILDNAVSAYSSCGSAQVMLAGHADK---SGSASYNVGLSQRRADS 307

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G+ +  +     F   R ++ +        NRR++I
Sbjct: 308 VKAYLASKGIPDG-VMTTEAFGESRPRVETADGVREVQNRRVEI 350


>gi|53728845|ref|ZP_00134888.2| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 294

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  E + + G+TD        + N  LS  R
Sbjct: 152 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 208

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR+++
Sbjct: 209 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 260


>gi|90407927|ref|ZP_01216101.1| hypothetical protein PCNPT3_06126 [Psychromonas sp. CNPT3]
 gi|90310941|gb|EAS39052.1| hypothetical protein PCNPT3_06126 [Psychromonas sp. CNPT3]
          Length = 304

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   S    +    L      LA     I I GHTD    +  A  N  L+  RA +  
Sbjct: 189 FEFDKSQLAEKDKKTLDAFINKLAGLNGRILIAGHTD---IQGAADYNQALATFRARAVE 245

Query: 297 QVLMKSGVSEDR-ISKISGFAHHRLKI--ASDPMNSANRR 333
           + L ++ +   + I +++ F   +      +   N++NRR
Sbjct: 246 KYL-RNKLDASQFIWEVTSFGESKPIDVKHNALANASNRR 284



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F              +      +      I+I GHTD    +   + N  LS  RA +  
Sbjct: 60  FKFDKYDLQASDQASIDLFIREIKDLKGRIAIVGHTD---VQGSLKYNVHLSAQRAQTIK 116

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK 321
             L K    ++   +I  +   +  
Sbjct: 117 DYLSKQLEVKNYDWEIKYYGETKPL 141


>gi|15618690|ref|NP_224976.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           CWL029]
 gi|15836314|ref|NP_300838.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           J138]
 gi|16752260|ref|NP_445628.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           AR39]
 gi|33242140|ref|NP_877081.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila
           pneumoniae TW-183]
 gi|4377090|gb|AAD18919.1| Peptidoglycan-Associated Lipoprotein [Chlamydophila pneumoniae
           CWL029]
 gi|7190005|gb|AAF38862.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           AR39]
 gi|8979154|dbj|BAA98989.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           J138]
 gi|33236650|gb|AAP98738.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila
           pneumoniae TW-183]
          Length = 192

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  + +  + I GHTD    R  A  N  L   RA +
Sbjct: 88  FATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDE---RGAASYNLALGARRANA 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
             + L K G+S DR+S IS    H L    + +    NRR +  +  R
Sbjct: 145 IKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQQNRRTEFKIHAR 192


>gi|325285434|ref|YP_004261224.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324320888|gb|ADY28353.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489]
          Length = 645

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     P+  + +QK+   +       I +  HTD+      + + W LS  RA + 
Sbjct: 538 FDLNKFDIRPDAEIEIQKVIVAMEKFPSLKIKVNSHTDSR--GKDSYNLW-LSQKRAEAT 594

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILV 338
              ++  G+   R+ +  GF   +L    +            NRR + ++
Sbjct: 595 VNYMISKGIDASRL-QGEGFGETKLVNKCENGVPCTVKEHQLNRRSEFII 643


>gi|291278013|gb|ADD91481.1| outer mebrane protein A [Riemerella columbina]
 gi|291278015|gb|ADD91482.1| outer mebrane protein A [Riemerella columbina]
          Length = 326

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  +++   +     + GHTDA   +  A  N RLS +RA S
Sbjct: 244 FFNFNKASIRPESNGKLDQAADIIKSSNGGTFLVTGHTDA---KGNANYNLRLSRERAAS 300

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH 317
               L   GVS  ++ S+  G A 
Sbjct: 301 VVAALEARGVSSSQLKSRGVGSAE 324


>gi|255008471|ref|ZP_05280597.1| putative outer membrane protein [Bacteroides fragilis 3_1_12]
 gi|313146200|ref|ZP_07808393.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12]
 gi|313134967|gb|EFR52327.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     +++   S L         +   T+  +    +       F  
Sbjct: 220 GSQVDQNAINEELNRYRSELAKAQSDLADAKNALANVKPVTKEVVKEVEVAGPRAIFFQI 279

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    + G+ D +     A+ N +LS  RA + Y  
Sbjct: 280 GKSKIDDYGMVNIQLAAKILKANPDKKYKVAGYADKA--TGSAKWNQKLSEARAQAVYDA 337

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  + GF         + +N    R+ IL
Sbjct: 338 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 371


>gi|313498243|gb|ADR59609.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 435

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +  +Q++ E L  +        + G  D   +P R        LS  R
Sbjct: 334 FQEGSASLDNKALRDVQRVTEYLRQAGKLQGKAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L + GV    + +++G         +  +     NRR+++ V
Sbjct: 389 AQAVRRELARGGVE---VLQVTGMGDELPVAGNELEQGRLRNRRVEVWV 434


>gi|288919975|ref|ZP_06414296.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
 gi|288348628|gb|EFC82884.1| OmpA/MotB domain protein [Frankia sp. EUN1f]
          Length = 212

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
           +AD +      E     ++++I       +F   S+         + K+   +   TE +
Sbjct: 77  LADAVSPLHTEERRDDQVVVTISAD---VLFAFDSADLTDVARAEITKLAPRVRPGTETV 133

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH-----HRL 320
           ++ GHTD          N  LS  RA +   VL     +  R+S    G A         
Sbjct: 134 TVLGHTDKL---GTPAYNVMLSQRRADAVAGVLRSLLPAGTRVSATGRGGADPVTPNSHP 190

Query: 321 KIASDP-MNSANRRIDI 336
             + DP   + NRR+ I
Sbjct: 191 DGSDDPDGRALNRRVQI 207


>gi|153952261|ref|YP_001398613.1| flagellar motor protein MotB [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939707|gb|ABS44448.1| putative chemotaxis protein MotB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 247

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ +W I+ T+    +A++  F       
Sbjct: 1   MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEFVKIFDYT 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136
            T        Q   E S   K      +  +     LK  +  Q++  +RL+  +    N
Sbjct: 60  ST--------QTVKEESKTQKKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDN 111

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                         S          D  K + +   Y  P    E
Sbjct: 112 QIALNLPSKVEFERSSAQIVSADIQDYLKRMAELTTYLPPQAKIE 156



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 29/185 (15%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
           + + + +  +K            L   K + M +++ ++ L   +  +    +A N+   
Sbjct: 62  QTVKEESKTQKKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQS-DNQIALNLPSK 120

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGH 271
           V                     F++SS+     +    L+++ E+  +      I IRG+
Sbjct: 121 VE--------------------FERSSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY 160

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
           TD S     +     L+  RA +  +  ++ G +   I  I  +  +      +P    N
Sbjct: 161 TDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NPQALEN 215

Query: 332 RRIDI 336
            R++I
Sbjct: 216 NRVEI 220


>gi|308048254|ref|YP_003911820.1| hypothetical protein Fbal_0532 [Ferrimonas balearica DSM 9799]
 gi|307630444|gb|ADN74746.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 3058

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 225  LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283
                ++     +F   S+       VVLQ + E LA  +   + I GH  ++P  +    
Sbjct: 2935 RTEAMELELVLLFANDSATIPATYDVVLQNLSEQLAPLADYQVVIEGH-ASAPASSRY-- 2991

Query: 284  NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            N  LS  RA +  + L + GV    I+ ++        +A +  ++   NRR  ++V
Sbjct: 2992 NLSLSERRAQAVGEALNQRGVESANITYVA-RGEEMPAVAGNTEHAYGQNRRAVVMV 3047


>gi|331674046|ref|ZP_08374808.1| YfiB [Escherichia coli TA280]
 gi|331068785|gb|EGI40178.1| YfiB [Escherichia coli TA280]
          Length = 160

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|237729519|ref|ZP_04560000.1| OmpA family protein [Citrobacter sp. 30_2]
 gi|226908125|gb|EEH94043.1| OmpA family protein [Citrobacter sp. 30_2]
          Length = 160

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +T +FDK+     PE+   ++++   LA +      + GHTD          N  LSL R
Sbjct: 52  DTILFDKNDYKLRPESEKQIKEMASKLAATGLNHARLDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A        +            G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAQGANIPRTNLTTQGLGKKYPIASNQTSKGRAENRRVAVVITT 159


>gi|116255792|ref|YP_771625.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260440|emb|CAK03544.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 649

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S          Q++ E L       I + GHTD    R     N +LS  RA + 
Sbjct: 544 FDFNKSSFTSIGTEAAQELLEALKEQKPGRIILVGHTDR---RGGDDYNQKLSERRAQAV 600

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSANRRID 335
              L  +G+         G         +       D +++ NRR++
Sbjct: 601 ADFLKSNGLDAT--IDAEGRGASEPVDVTATANLTEDDVDALNRRVE 645


>gi|37525710|ref|NP_929054.1| outer membrane protein A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36785139|emb|CAE14068.1| Outer membrane protein A precursor (Outer membrane protein II*)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 368

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 17/124 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ +SS    E    L ++   LA+       + + G+TD          N +LS
Sbjct: 237 RSDVLFEFASSELKAEGKHNLDQLYTELANIDPNQGKVLVLGYTDRI---GKDVYNQKLS 293

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN--------RRIDILV 338
             RA S    L+  G+    IS   G         S  D ++  N        RR++I +
Sbjct: 294 QKRAQSVVDYLVSKGIPSGSISA-EGHGKANPVTGSTCDKVHKPNLINCLAPDRRVEIEI 352

Query: 339 EDRQ 342
           +  +
Sbjct: 353 QGTK 356


>gi|239787605|emb|CAX84073.1| OmpA/MotB domain protein [uncultured bacterium]
          Length = 263

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           ++ +  ++  +L  + +++ S  S L +    +G+  +    G L+ +       +F + 
Sbjct: 84  QEAIEFEQAVQLVRIKERLESMQSRLPS---AQGLEVKPVEEGFLVRLS---RAALFPEG 137

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHT-DAS-PFRNIARDNWRLSLDRAYSAYQV 298
           S    PE + +L+++ E+ A     + I  H  DA  P        W L+   A +    
Sbjct: 138 SLAIRPEALPLLKQMAELFAKLPNTVRIDSHAGDARLPVAAPVTSLWALTAAEAATLADY 197

Query: 299 LM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +   G+   R+   +G    R   +     S    I+IL+
Sbjct: 198 FVTAGGLDPARLVA-TGHHPSRDSASGGTRGSG---IEILL 234


>gi|238897411|ref|YP_002923088.1| pal protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465166|gb|ACQ66940.1| pal protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 173

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P    +L    + +L + +  + I GHTD       +  N  L   RA + 
Sbjct: 73  FDFDKYNIKPNFAEILNAHADFLLNNPSFKVDIEGHTDQ---SGTSEYNMALGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
              L   GVS  ++S +S      +   ++  + S NRR
Sbjct: 130 KMYLQGKGVSAQQMSIVSYGKEKPVYRGNNKEDYSQNRR 168


>gi|91787861|ref|YP_548813.1| OmpA/MotB [Polaromonas sp. JS666]
 gi|91697086|gb|ABE43915.1| OmpA/MotB [Polaromonas sp. JS666]
          Length = 180

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +  PE   +++     L A+    ++I GHTD    R     N  L   R+ + 
Sbjct: 79  FDFDSYVIKPEFQGIVEAHARYLTANKARKMAIEGHTDE---RGGREYNLALGQRRSEAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV++ ++  +S F   +     + +   + NRR +I
Sbjct: 136 RRALGLLGVADAQVEAVS-FGKEKPAATGSDEDSMAKNRRAEI 177


>gi|308273805|emb|CBX30406.1| hypothetical protein N47_Q17290 [uncultured Desulfobacterium sp.]
          Length = 185

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    E+  ++  I + +       I + GHTD          N+ LS+ RA + 
Sbjct: 84  FDFDSNNLTAESNKLIDDILQAIKERDSQDIPVVGHTDR---AGNPDYNFSLSMQRATAV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
             +L+  G+  +   +IS        I +    + 
Sbjct: 141 RDLLVNRGIKSE-FIQISSHGEGNPLIPTADNVAE 174


>gi|37704652|gb|AAR01598.1| OprF [Pseudomonas sp. MFY140]
          Length = 320

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +       + + GHTD+         N +LS   A + 
Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERLANAV 293

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322
            QVL  + GV   R+  + G+   R   
Sbjct: 294 KQVLTNQYGVEASRVQSV-GYGESRPVA 320


>gi|330827372|ref|YP_004390610.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329312680|gb|AEB87094.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 351

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  S +    E    L ++   LA + E + IRG TD++        N  L++ RA +  
Sbjct: 243 FSSSVANLNDEAKRNLSELLP-LAMTAERVLIRGRTDST---GTVAGNRALAIARAATVR 298

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               + GV   ++              ++   SANRR+++
Sbjct: 299 AAFARGGVDPRKLKVSYCVTCFVASNDTEAGRSANRRVEV 338


>gi|312114255|ref|YP_004011851.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219384|gb|ADP70752.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 213

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 241 SSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           S++ + +  + +  +G  L     +     I GHTDA   R     N  LS  RA +   
Sbjct: 98  SALTMSDAQITVDTLGRALNDPRLARSRFMIIGHTDA---RGGDGYNLGLSQRRANAVAA 154

Query: 298 VLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            L     V+ +R+    G     LK    P+   NRR+ I
Sbjct: 155 RLRDFHAVAANRLVA-EGRGMRELKDPVRPLGGINRRVQI 193


>gi|271499765|ref|YP_003332790.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech586]
 gi|270343320|gb|ACZ76085.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech586]
          Length = 168

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   FD       P+   +L      L  +    ++I GH D    R    
Sbjct: 55  LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTIEGHADE---RGTPE 111

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   S NRR
Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163


>gi|242238603|ref|YP_002986784.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya
           dadantii Ech703]
 gi|242130660|gb|ACS84962.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech703]
          Length = 168

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   FD       P+   +L      L  +    +++ GH D    R    
Sbjct: 55  LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   S NRR
Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163


>gi|157963679|ref|YP_001503713.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157848679|gb|ABV89178.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345]
          Length = 404

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
            +++ + T +++  S          +QK+ + +     + I++ GHT A         N 
Sbjct: 287 RVVEMKLTVLYENDSDKIDLSNTDKIQKLADFIEQYDIKQITVFGHTSAV---GSQAYNQ 343

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           +LS  RA S  ++L         I K  G           P    NRRI++ +
Sbjct: 344 KLSERRAASVAEMLAADFNIATGIIKAVGKGESEPISHI-PE--QNRRIEVYL 393


>gi|94499552|ref|ZP_01306089.1| hypothetical protein RED65_00925 [Oceanobacter sp. RED65]
 gi|94428306|gb|EAT13279.1| hypothetical protein RED65_00925 [Oceanobacter sp. RED65]
          Length = 1644

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K  D+  +     S+       +     E+  + + K  + D AK++   +   V+D+  
Sbjct: 519 KADDIVGTPIDALSLVNSIKEIVDVYEDEEKSSARYKSLMLDYAKQVQMVVRTEVSDSEK 578

Query: 213 K------------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           +             V  E    G + ++        F    S   P+     +   E+  
Sbjct: 579 QKAKEKIIEFKNQHVYVEKKPDGDVYNLFVT-----FAFDRSQFKPD--NSFEDFKELFN 631

Query: 261 HSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                  +++ GHT +         N  LSL RA S  + L  S    +R+  + G    
Sbjct: 632 SLPSSTKLTLIGHTCS--IGTAEY-NLGLSLRRAESVRKALGFSDKDSERVF-VEGRGMT 687

Query: 319 RLK--IASDPMNSANRRI 334
                 +++     NRR+
Sbjct: 688 DPAYDNSTEAGRQKNRRV 705


>gi|92118969|ref|YP_578698.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gi|91801863|gb|ABE64238.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 164

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLD 290
           +   F+   +   P+ I  L+K    L  +      +I GH D    R     N  L   
Sbjct: 56  DRVFFESDQTNLSPQAITTLEKQARWL-QTYNRYSFTIEGHADE---RGTREYNIALGAR 111

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           RA +    L   G++  R+  IS +   R     + ++  S NRR
Sbjct: 112 RAQTVRSFLASRGINPSRMRTIS-YGKERPVAVCNDISCWSQNRR 155


>gi|312897410|ref|ZP_07756834.1| OmpA family protein [Megasphaera micronuciformis F0359]
 gi|310621471|gb|EFQ05007.1| OmpA family protein [Megasphaera micronuciformis F0359]
          Length = 397

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F      P+      L     V       +  + G+TDA   R     N  LS  R  + 
Sbjct: 295 FAFDVDTPIAYDQGKLDHFVAVAKEYPHDMFKLVGNTDA---RGTDAYNDDLSKRRVVNV 351

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            +  +  GV+ +++     G        A+D   + NRR+DI
Sbjct: 352 ARYAVDHGVNPEQLELSYEGKNDPVATNATDQGRADNRRVDI 393


>gi|15965621|ref|NP_385974.1| hypothetical protein SMc00141 [Sinorhizobium meliloti 1021]
 gi|15074802|emb|CAC46447.1| Hypothetical protein SMc00141 [Sinorhizobium meliloti 1021]
          Length = 671

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+            V + + +VL         I GHTDA       + N  LS +R
Sbjct: 557 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 613

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   +L +  G+  + +    G+    LKI +D     NRR+ I
Sbjct: 614 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 658


>gi|85714482|ref|ZP_01045470.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gi|85698929|gb|EAQ36798.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 318

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S     +    LQ I + +  +     +EV  I GHTDA        DN  LS  R
Sbjct: 197 FETGSWDIPDDQAAKLQVIADGINRAISRNPSEVFLIEGHTDAV---GNDVDNLSLSDRR 253

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           A SA ++L +            G+    LK+ +D  +  NRR+ 
Sbjct: 254 AQSAAELLTQQFQVPPENLVTQGYGEQNLKVQTDGPSRENRRVT 297


>gi|197106106|ref|YP_002131483.1| OmpA family protein [Phenylobacterium zucineum HLK1]
 gi|196479526|gb|ACG79054.1| OmpA family protein [Phenylobacterium zucineum HLK1]
          Length = 178

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               F   S +   E   VLQ     L  +      I G+ D    R     N  L   R
Sbjct: 68  ERVYFALDSDLLDAEARSVLQLQAAWLQRNPTVRARIEGNADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
           A +A Q L++SGV   R+  IS +   R           + NR
Sbjct: 125 AQAARQFLIRSGVDSTRLETIS-YGKERPIDPGSTEEAWARNR 166


>gi|307611849|emb|CBX01563.1| hypothetical protein LPW_32501 [Legionella pneumophila 130b]
          Length = 294

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +      V L++I + +      +VI I GH D S       +N  +S  RA S
Sbjct: 190 FGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294


>gi|298385171|ref|ZP_06994730.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|298262315|gb|EFI05180.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 365

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           ++++   +    F  +S+    +    + ++ E L  +    + + G+ D +     +R 
Sbjct: 256 VVTVQPMKQDIFFALNSARIQDDQKSKIDELAEYLQKNPSAKVQVTGYADVN--TGNSRI 313

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           N  LS  RA +    L   G+S DRI  I           +        R+ I +
Sbjct: 314 NKTLSDKRAVNVADALKTKGISTDRII-IDSKGDTVQPYKT----PEENRVSICI 363


>gi|148979316|ref|ZP_01815448.1| hypothetical protein VSWAT3_05151 [Vibrionales bacterium SWAT-3]
 gi|145961856|gb|EDK27148.1| hypothetical protein VSWAT3_05151 [Vibrionales bacterium SWAT-3]
          Length = 322

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F            + L    E +      I+I GHTD   ++     N RLS  RA S  
Sbjct: 62  FAFDKYKLRDLDKINLDTFVEEIRGLKGRITIVGHTD---YKGSLEYNQRLSQRRAKSVA 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342
             L       +   ++      +  +   +D   + NRR  I+ E+ Q
Sbjct: 119 DYLKAYLDPTNYDWEVKHLGETQPLLLGKTDKDRAENRRAFIVFEEAQ 166



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S+  PE +  L      L+     I + GHTD          N +L+  RA 
Sbjct: 188 TPHFDFDKSVLKPEDLTQLDDFASQLSGLQGNIMVAGHTDQ---AGSVSYNEKLAERRAE 244

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           +  + L      +  I ++  F   +  I   S+  ++ NRR
Sbjct: 245 TVVKYLKTKLNPKQFIWEVKSFGKLQPAINERSEKADALNRR 286


>gi|54295802|ref|YP_128217.1| hypothetical protein lpl2892 [Legionella pneumophila str. Lens]
 gi|53755634|emb|CAH17136.1| hypothetical protein lpl2892 [Legionella pneumophila str. Lens]
          Length = 294

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +      V L++I + +      +VI I GH D S       +N  +S  RA S
Sbjct: 190 FGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294


>gi|153808398|ref|ZP_01961066.1| hypothetical protein BACCAC_02692 [Bacteroides caccae ATCC 43185]
 gi|149128720|gb|EDM19937.1| hypothetical protein BACCAC_02692 [Bacteroides caccae ATCC 43185]
          Length = 274

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
           V+ ++      I +   +    F  +S+    E    +  + E L  +    I I G+ D
Sbjct: 155 VVEQSKPKEDKIVVEPMKQNIFFALNSARIQDEQQQKISSLVEYLEKNPAAKICITGYAD 214

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            +     A  N++LS  RA +  + L   G++ DRI K+          ++        R
Sbjct: 215 VN--TGNATINFKLSEARAKNVAEALKSKGIAADRI-KVDFKGDTVQPYST----PKENR 267

Query: 334 IDILVED 340
           + I + +
Sbjct: 268 VSICITE 274


>gi|84502672|ref|ZP_01000791.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola
           batsensis HTCC2597]
 gi|84389067|gb|EAQ01865.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola
           batsensis HTCC2597]
          Length = 681

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 85/263 (32%), Gaps = 15/263 (5%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ-RLE 128
           N   KN         D     +     K+  + D  + +   D+K  + +          
Sbjct: 404 NEILKNGSEVVSNSGDRVVVQQPDGSYKVYRNDDVLMFQPGTDVKTYAYDDGSTRTVATR 463

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           ++   +   + ++      TR    G+++    D   S   E N           +  + 
Sbjct: 464 DDGVTIETIRAADGTVLRRTRILPDGQEVVLFDDTRDSQEVEVNELPQVTDTRNRIDFQS 523

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPLPE 247
            +  +  A   +     +     +  V        ++  I +D  N   F+  S++  P 
Sbjct: 524 AQEDELRAALQARAPEAVDRRFSLSQVRNINAVRQLVPEIDVDNIN---FETGSAVIRPA 580

Query: 248 TIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
               L ++G+++          I  I GHTDA         N  LS  RA S    L + 
Sbjct: 581 EAEELARLGQLMRERIEENPGEIFLIEGHTDAV---GSGSYNLALSDRRAESVALALTEY 637

Query: 303 -GVSEDRISKISGFAHHRLKIAS 324
             V  + +  I G+    LK+ +
Sbjct: 638 FDVPPENMV-IQGYGETDLKVRT 659


>gi|110636551|ref|YP_676758.1| outer membrane peptidoglycan-associated lipoprotein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279232|gb|ABG57418.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 656

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
            I I+      ++D       P+  V L  +  ++  + E  I +  HTD    R  A  
Sbjct: 532 RIVIV---RNILYDYDKWDIRPDAAVELDTMVMLMNANPEIQIELGSHTDE---RGSAEY 585

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILVED 340
           N  L+  RA +A   ++  G+S+DRI    G+      I +    +    NRR    V +
Sbjct: 586 NRVLAQKRAQAAVDYIIAHGISKDRIIA-KGYGEDEPAIRNAKTEADHQTNRRTTFKVLN 644


>gi|311103960|ref|YP_003976813.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans
           A8]
 gi|310758649|gb|ADP14098.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans
           A8]
          Length = 166

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285
           SI+ Q+ +  FD  S     +   +++   + LA H  + I I G+TD    R  A  N 
Sbjct: 54  SILAQQRSVYFDFDSYTVSDQYRSLVETHAKYLASHQQQTIKIEGNTDE---RGGAEYNL 110

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            L   RA +  +++   GVS+++I  IS G    +    S+   + NRR DI+
Sbjct: 111 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKSTGTSEADFAENRRADIV 163


>gi|82523947|emb|CAI78669.1| OmpA protein [uncultured delta proteobacterium]
          Length = 408

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +        +  L+     +  ++  I I GHTD       +  N + SL+RA + +
Sbjct: 305 FGMNELAMNEAALAELKVFYNKVKDASGKIVIEGHTDG---HGDSAANLKASLERAVNTW 361

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           + L   G+S+    ++ G    +    ++       NRR+++
Sbjct: 362 RKLQSMGLSDKIKVELRGVGGSKPVADNNTQEGRDKNRRVEL 403


>gi|110589614|gb|ABG77309.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 273

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              FD + S    +    + K+ E L+        I GHTD +      + N RLSL RA
Sbjct: 210 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 266

Query: 293 YSAYQVL 299
            S    L
Sbjct: 267 NSVKSAL 273


>gi|107100492|ref|ZP_01364410.1| hypothetical protein PaerPA_01001517 [Pseudomonas aeruginosa PACS2]
          Length = 281

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +P T+  L K+ ++        I + GHTD++        N +LS +RA S   +   S
Sbjct: 175 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 231

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           G+  D++ ++ G      +   AS    + NRR+++L   R
Sbjct: 232 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 271


>gi|88857215|ref|ZP_01131858.1| ompA family protein [Pseudoalteromonas tunicata D2]
 gi|88820412|gb|EAR30224.1| ompA family protein [Pseudoalteromonas tunicata D2]
          Length = 580

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        +    L ++ E +  +    + + G++D+         N +LSL+RA + 
Sbjct: 481 FNYGDQDLDNKGKRDLDRLIEFMEENPGRRLVLMGYSDSI---GAKLKNTQLSLNRAKAV 537

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339
            + L   G+    +  + G         +D       NRR+++ + 
Sbjct: 538 EKELQARGIG---VMAVEGLGEALPVANNDNESGRERNRRVEVWLL 580


>gi|307579950|gb|ADN63919.1| outer membrane protein P6 precursor [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 149

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E   VL    + L +     I+++G+TD    R     N  L   R  S 
Sbjct: 46  FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 102

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 103 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 145


>gi|126736760|ref|ZP_01752498.1| OmpA/MotB [Roseobacter sp. CCS2]
 gi|126713731|gb|EBA10604.1| OmpA/MotB [Roseobacter sp. CCS2]
          Length = 592

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F    ++   + I  +++I  ++  +      + + G TD+        +N  L+  RA 
Sbjct: 483 FLTGQAVLDTKAIADIKRISSIVRSAEYEGYEVLVFGFTDSV---GTINNNIALAERRAQ 539

Query: 294 SAYQVLMK--SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           +   VL+   +G+ +D    I G         +D       NRR+++ +  R
Sbjct: 540 TVKDVLIAENAGILDDETVSIFGMGPIAPVNCNDTSVGRDLNRRVEVWIRPR 591


>gi|28198797|ref|NP_779111.1| outer membrane protein P6 precursor [Xylella fastidiosa Temecula1]
 gi|28056888|gb|AAO28760.1| outer membrane protein P6 precursor [Xylella fastidiosa Temecula1]
          Length = 187

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E   VL    + L +     I+++G+TD    R     N  L   R  S 
Sbjct: 84  FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 141 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 183


>gi|71901734|ref|ZP_00683806.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|182681496|ref|YP_001829656.1| peptidoglycan-associated lipoprotein [Xylella fastidiosa M23]
 gi|71728506|gb|EAO30665.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|182631606|gb|ACB92382.1| peptidoglycan-associated lipoprotein [Xylella fastidiosa M23]
          Length = 179

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E   VL    + L +     I+++G+TD    R     N  L   R  S 
Sbjct: 76  FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 133 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 175


>gi|71275795|ref|ZP_00652079.1| OmpA/MotB [Xylella fastidiosa Dixon]
 gi|71900394|ref|ZP_00682527.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|170730225|ref|YP_001775658.1| outer membrane protein P6 [Xylella fastidiosa M12]
 gi|71163373|gb|EAO13091.1| OmpA/MotB [Xylella fastidiosa Dixon]
 gi|71729826|gb|EAO31924.1| OmpA/MotB [Xylella fastidiosa Ann-1]
 gi|167965018|gb|ACA12028.1| outer membrane protein P6 precursor [Xylella fastidiosa M12]
          Length = 178

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E   VL    + L +     I+++G+TD    R     N  L   R  S 
Sbjct: 75  FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 132 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 174


>gi|320577070|gb|ADW54044.1| outer membrane protein A [Sodalis glossinidius]
          Length = 267

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+   +   PE    L ++   L+        + + G+TD          N +LS
Sbjct: 188 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 244

Query: 289 LDRAYSAYQVLMKSGVSEDRISK 311
            +RA S    L+  G+  D+IS 
Sbjct: 245 QERAQSVVSYLVSKGIPSDKISA 267


>gi|54302595|ref|YP_132588.1| hypothetical protein PBPRB0916 [Photobacterium profundum SS9]
 gi|46916019|emb|CAG22788.1| hypothetical protein PBPRB0916 [Photobacterium profundum SS9]
          Length = 208

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 211 IVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267
           +   + +  T     +L  + +Q+    FD  +     +   +L  I   L  H    + 
Sbjct: 67  VTDSITYTATPDASILLAQLPEQKEVIYFDNMNYELSVKNQQLLDPIALRLKLHLDSYLI 126

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326
           + GH+D         +N  LS +RA+S    +    G+ E+RI +I       L    + 
Sbjct: 127 VIGHSDD---AGSKEENLVLSFERAFSVAIYISSVFGIEEERI-QIVALGDDELISNGNS 182

Query: 327 M--NSANRRIDIL 337
                 NRR++++
Sbjct: 183 EQERRLNRRVEVI 195


>gi|212219329|ref|YP_002306116.1| IcmN protein, OmpA family [Coxiella burnetii CbuK_Q154]
 gi|212013591|gb|ACJ20971.1| IcmN protein, OmpA family [Coxiella burnetii CbuK_Q154]
          Length = 212

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+    +    L+ +  ++       + +  +TD +      +    L+  +A  
Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G++  R++   G+        +   +    NRR++I
Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200


>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040224|gb|ACT57020.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           ++  FD SS    P  I VL  +G  L        I GH D          +  L L RA
Sbjct: 50  DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL---GSRNSSIALGLRRA 106

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           Y+ +   +  G+S  R+ K++ +      +    +   + NRR
Sbjct: 107 YAVFNYFVARGISASRM-KVTSYGKEMPSVYGHDEDAYAKNRR 148


>gi|209363772|ref|YP_001423789.2| IcmN protein, OmpA family [Coxiella burnetii Dugway 5J108-111]
 gi|212212032|ref|YP_002302968.1| IcmN protein, OmpA family [Coxiella burnetii CbuG_Q212]
 gi|207081705|gb|ABS76937.2| IcmN protein, OmpA family [Coxiella burnetii Dugway 5J108-111]
 gi|212010442|gb|ACJ17823.1| IcmN protein, OmpA family [Coxiella burnetii CbuG_Q212]
          Length = 212

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+    +    L+ +  ++       + +  +TD +      +    L+  +A  
Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G++  R++   G+        +   +    NRR++I
Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200


>gi|215919216|ref|NP_820613.2| ompA family protein [Coxiella burnetii RSA 493]
 gi|206584100|gb|AAO91127.2| IcmN protein, OmpA family [Coxiella burnetii RSA 493]
          Length = 212

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+    +    L+ +  ++       + +  +TD +      +    L+  +A  
Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G++  R++   G+        +   +    NRR++I
Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200


>gi|161830197|ref|YP_001597454.1| ompA family protein [Coxiella burnetii RSA 331]
 gi|164685809|ref|ZP_01945857.2| ompA family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165919482|ref|ZP_02219502.1| ompA family protein [Coxiella burnetii RSA 334]
 gi|161762064|gb|ABX77706.1| ompA family protein [Coxiella burnetii RSA 331]
 gi|164601325|gb|EAX33525.2| ompA family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165916897|gb|EDR35501.1| ompA family protein [Coxiella burnetii RSA 334]
          Length = 170

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   S+    +    L+ +  ++       + +  +TD +      +    L+  +A  
Sbjct: 59  LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 115

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G++  R++   G+        +   +    NRR++I
Sbjct: 116 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 158


>gi|319786286|ref|YP_004145761.1| peptidoglycan-associated lipoprotein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464798|gb|ADV26530.1| peptidoglycan-associated lipoprotein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 170

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 67  FDFDQDALKPEFQAIVGCHAKYLRDRPSARITLQGNADE---RGSRAYNQALGERRGNAV 123

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  ++  +S +   R        +  + NRR++I+
Sbjct: 124 NSALQAAGGSASQLEVVS-YGEERPVCTESTESCWAQNRRVEIV 166


>gi|152984801|ref|YP_001349685.1| hypothetical protein PSPA7_4332 [Pseudomonas aeruginosa PA7]
 gi|150959959|gb|ABR81984.1| probable outer membrane protein [Pseudomonas aeruginosa PA7]
          Length = 293

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
            +P T+  L K+ ++        I + GHTD++        N +LS +RA S   +   S
Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243

Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341
           G+  D++ ++ G      +   +S    + NRR+++L   R
Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNSSAAGRAQNRRVEVLYTQR 283


>gi|119478304|ref|ZP_01618335.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [marine gamma proteobacterium HTCC2143]
 gi|119448644|gb|EAW29889.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288
            R+   F  +      +    L  +   +   + V    I GHTD+         N  LS
Sbjct: 188 NRSRVHFITAKFELTRDAKTQLDDVVRYVKADSSVTGFYIDGHTDSI---GRRLYNLELS 244

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
             RA +  + L+ +GV E  +            I +       ANRR+ + +E 
Sbjct: 245 KQRAEAVTKYLVSNGVDEA-MITTRYHGERYPVIDNSSAKNRYANRRVTLRLER 297


>gi|283835685|ref|ZP_06355426.1| OmpA family protein [Citrobacter youngae ATCC 29220]
 gi|291068900|gb|EFE07009.1| OmpA family protein [Citrobacter youngae ATCC 29220]
          Length = 160

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FDK+     PE+   +Q++   LA +      + GHTD          N  LSL R
Sbjct: 52  DNILFDKNDYKLRPESEKQIQEMASKLAATGLNHARLDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        +            G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAQGANIPRTNLTTQGLGKKYPIASNQTSKGRAENRRVAVVI 157


>gi|229588858|ref|YP_002870977.1| hypothetical protein PFLU1327 [Pseudomonas fluorescens SBW25]
 gi|229360724|emb|CAY47582.1| putative outer membrane protein [Pseudomonas fluorescens SBW25]
          Length = 381

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++ LP T+    ++ + +    +  + + GH DA+     ++    L+ +RA S   +  
Sbjct: 202 AMLLPVTLGPFTRVAKAVEADPKTAVLVLGHVDATGTAPASQ---ALTKERAQSIASIFS 258

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
            SG+ +DR+  + G      + A+D     + NRR++I+   R
Sbjct: 259 LSGLKQDRLM-LRGMGDLMPRAANDSNQGRALNRRMEIMFTQR 300


>gi|126731139|ref|ZP_01746947.1| hypothetical protein SSE37_21910 [Sagittula stellata E-37]
 gi|126708441|gb|EBA07499.1| hypothetical protein SSE37_21910 [Sagittula stellata E-37]
          Length = 242

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  S+    +    L  +   L+    +    ++ GHTDA         N  LS  RA 
Sbjct: 125 FDFDSANIRGDQFGKLTALVAALSDPALAGTSYAVIGHTDA---SGSEGYNCDLSRRRAA 181

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           S    L  + V+   +  + GF  H LK   DP    NRR+  +
Sbjct: 182 SVAGALNAAYVTLP-LYPV-GFGEHVLKNVYDPRAPENRRVTFM 223


>gi|238755499|ref|ZP_04616838.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia ruckeri ATCC 29473]
 gi|238706255|gb|EEP98633.1| Outer membrane protein and peptidoglycan-associated (lipo)protein
           [Yersinia ruckeri ATCC 29473]
          Length = 92

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             ++KIG  L       I + GHTD+         N RLS  RA +    L   G+    
Sbjct: 2   QTVEKIGRALKAVDINHIRLNGHTDSM---GEDSYNDRLSYGRASAVADTLATIGMPRAN 58

Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           I  + G         +      + NRR+ ++V
Sbjct: 59  ID-VRGLGKLNPVADNHTAKGRAENRRVAMIV 89


>gi|237809441|ref|YP_002893881.1| peptidoglycan-associated lipoprotein [Tolumonas auensis DSM 9187]
 gi|237501702|gb|ACQ94295.1| peptidoglycan-associated lipoprotein [Tolumonas auensis DSM 9187]
          Length = 171

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289
           Q N   F+  S     +   +LQ   + L  H++  + I GHTD    R     N  L  
Sbjct: 65  QDNVIYFNYDSDAIEGQYAQLLQTHADFLRGHNSVKVLIEGHTDE---RGTPEYNIALGE 121

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
            RA +  + +   GV   ++S +S +   +        ++   NRR
Sbjct: 122 RRAKAVAKYMQNLGVDVSQLSVVS-YGEEKPADPGHAEDAFGHNRR 166


>gi|89053189|ref|YP_508640.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88862738|gb|ABD53615.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 195

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   + G V       V  +    G+           MF   S+         LQ+    
Sbjct: 66  IEGYMEGRVNPENGMPVCLDVNPCGV------ANTDTMFQSGSARLTGSGRQYLQQF--F 117

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                   +I GHTD+   R     N RLS  RA +   V    G    R+++  G+   
Sbjct: 118 AGAGAYAYAIYGHTDS---RASDEYNMRLSERRAAAVANVARSVG---ARVAREIGYGER 171

Query: 319 RLKIASDPMN--SANRRIDIL 337
           R    +D       NRR++I+
Sbjct: 172 RPVAPNDSAANMQRNRRVEIV 192


>gi|254361857|ref|ZP_04977991.1| lipoprotein PlpD [Mannheimia haemolytica PHL213]
 gi|3283200|gb|AAC32565.1| lipoprotein Plp4 [Mannheimia haemolytica]
 gi|153093396|gb|EDN74387.1| lipoprotein PlpD [Mannheimia haemolytica PHL213]
          Length = 284

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 143 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 199

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
           + +    L++ GV   +I  +  G A+       +   +       NRR++I
Sbjct: 200 SNTVKARLVQQGV-TAQIEAVGYGKANQVKACDGETGQALKDCLRPNRRVEI 250


>gi|21232447|ref|NP_638364.1| outer membrane protein P6 precursor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767470|ref|YP_242232.1| outer membrane protein P6 precursor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990576|ref|YP_001902586.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21114228|gb|AAM42288.1| outer membrane protein P6 precursor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572802|gb|AAY48212.1| outer membrane protein P6 precursor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732336|emb|CAP50528.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           campestris]
          Length = 172

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 126 SSALQAAGGSASQLTVVS-YGEERPVCTETSESCWSQNRRVEIV 168


>gi|322418107|ref|YP_004197330.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18]
 gi|320124494|gb|ADW12054.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18]
          Length = 196

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            ++      P ++    A + K   +    + +     +VA ++ +      T       
Sbjct: 31  EEQAPAVTAPSTETAKPAREAKPEQKAPVTEQTPVREPVVAQDLRETTKAPATD------ 84

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR 286
           +  Q     F+  SS    E+   L +  E L    +  + I G+ D    R     N  
Sbjct: 85  LQSQLQKVYFNFDSSDLSEESRNTLSRNAEYLSKQGSLKVLIEGNCDE---RGSDDYNMA 141

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           L   RA +A   L+  G++ +RIS IS +   +       +   + NRR + +V
Sbjct: 142 LGERRAKAAKDYLVNLGIASERISTIS-YGEEKPADPGHDEAAWAKNRRAEFVV 194


>gi|149371838|ref|ZP_01891157.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
 gi|149354978|gb|EDM43539.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [unidentified eubacterium SCB49]
          Length = 647

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 227 SIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
            + D  +  M  FD        +  + LQK+ + +       I +R HTD+   RN    
Sbjct: 527 DLNDILDLNMIYFDLDKDFIRADAQIELQKVIKYMKKYPNLKIDVRSHTDS---RNSHAY 583

Query: 284 NWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRID 335
           N  LS  R   +   ++   G+S  R++   G+   +L          S+ ++  NRR +
Sbjct: 584 NEDLSSRRNKNTIAYIVNHGGISAARLTG-RGYGETQLTNHCSDGVQCSEALHQLNRRSE 642

Query: 336 ILVED 340
            ++ +
Sbjct: 643 FIIVE 647


>gi|110598626|ref|ZP_01386892.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031]
 gi|110339738|gb|EAT58247.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031]
          Length = 150

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               FD   S    + +  L+   + L  +    + + GH D    R  A  N  L   R
Sbjct: 45  GDVFFDFDKSDIRTDAVDQLKTNAQWLQANPSQKVVVEGHCDN---RGTAEYNLALGERR 101

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   ++  G    R+  +S +   R     +     + NRR
Sbjct: 102 AAAARDFVVNLGTDAARVKTVS-YGEERPFAQGNTEEAWAQNRR 144


>gi|90577941|ref|ZP_01233752.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
 gi|90441027|gb|EAS66207.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14]
          Length = 347

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              E    LQ + + L       + + G+T  +   ++A  N +LS  RA +   +L + 
Sbjct: 231 LTQEDKQRLQPMIQRLTRYPSATVEVTGYTSNT--GSVAY-NQKLSEKRAKNVADLLSQY 287

Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                +I+   G         +D     + NRR++I
Sbjct: 288 VADASQITA-KGMGEANPIATNDTAKGRAENRRVEI 322


>gi|152978942|ref|YP_001344571.1| SmpA/OmlA domain-containing protein [Actinobacillus succinogenes
           130Z]
 gi|150840665|gb|ABR74636.1| SmpA/OmlA domain protein [Actinobacillus succinogenes 130Z]
          Length = 282

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 18/115 (15%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        E   V+  +   L  S    +S+ G+TD          N  LS  R
Sbjct: 147 GDFLFDFDKDTLTTEGKKVVDNVASQLKSSEAKEVSVAGYTDRL---GSDAYNLDLSQRR 203

Query: 292 AYSAYQVLMKSGVS----------EDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A      L++ GVS           +++    G     L     P    NRR++I
Sbjct: 204 ADRVKNRLIEQGVSAQITATGYGKANQVKACEGERGQALINCLHP----NRRVEI 254


>gi|309780841|ref|ZP_07675582.1| peptidoglycan-associated outer-membrane lipoprotein [Ralstonia sp.
           5_7_47FAA]
 gi|308920523|gb|EFP66179.1| peptidoglycan-associated outer-membrane lipoprotein [Ralstonia sp.
           5_7_47FAA]
          Length = 167

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKPEYQGLLGQHSRYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 124 RRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIV 166


>gi|21673470|ref|NP_661535.1| peptidoglycan-associated lipoprotein [Chlorobium tepidum TLS]
 gi|21646575|gb|AAM71877.1| peptidoglycan-associated lipoprotein [Chlorobium tepidum TLS]
          Length = 170

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  SS    E    L +    +  +    + I GH D    R     N  L   R
Sbjct: 65  GDIFFDFDSSALSSEAQEQLNQNAAWMQKNPTSAVIIEGHCDE---RGTDEYNIALGERR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A +A   L+  GVS  R+S +S +   +      ++   + NRR
Sbjct: 122 AEAARMYLVNLGVSGGRLSTVS-YGEEKPFDPGHNEEAWAKNRR 164


>gi|121998997|ref|YP_001003784.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121590402|gb|ABM62982.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 208

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 228 IIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280
           ++D+  +P+      F   SS    + I VL+   E L    +  ++I GHTD    R  
Sbjct: 91  VLDEPESPLATRRVHFAFDSSNIRDDDIPVLEAHAEFLREHPDERMTIEGHTDE---RGS 147

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
              N  L   RA +  ++L  +G   D++  +S      L   S+    + NRR ++L
Sbjct: 148 REYNLALGERRAEAVERLLRANGARSDQLEVVSYGEEDPLVDESNEDAWAENRRAELL 205


>gi|116621983|ref|YP_824139.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225145|gb|ABJ83854.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 199

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQ----KIGEVLAHST-EVISIRGHTDASPFRNIA 281
            ++ +     FD   +   P+ +  L     ++ ++L       + I GH D    R  A
Sbjct: 80  QLLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYPDYKLRIEGHADE---RGSA 136

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
             N  L   RA +A + L++ G+   ++  ++ F   R        N    NRRI I+ E
Sbjct: 137 EYNVALGDRRAATAKEYLVQVGIPSTQLD-VTSFGKERPVCQDHNENCWQKNRRIHIVAE 195

Query: 340 DR 341
            +
Sbjct: 196 AK 197


>gi|119474630|ref|ZP_01614983.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
 gi|119450833|gb|EAW32066.1| flagellar motor protein [marine gamma proteobacterium HTCC2143]
          Length = 110

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 34  KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86
              +AD M++LM FF+++   +  D    K +           N            I  +
Sbjct: 1   MSTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSMAQAFGVQNKLDMKDPPKGTSIIAQ 60

Query: 87  QNPPERSSQNKIDL 100
           +  P R     I+ 
Sbjct: 61  EFSPGRPDPTPINQ 74


>gi|300692236|ref|YP_003753231.1| peptidoglycan-associated lipoprotein, protein pal, component of
           tol-pal system [Ralstonia solanacearum PSI07]
 gi|299079296|emb|CBJ51968.1| Peptidoglycan-associated lipoprotein, protein pal, component of
           tol-pal system [Ralstonia solanacearum PSI07]
          Length = 172

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 72  FDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 128

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            + L   GV + ++  +S G    +     +   + NRR DI
Sbjct: 129 RRALSSLGVPDSQMEAVSLGKEKPQATGHDEESWAQNRRSDI 170


>gi|299136066|ref|ZP_07029250.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602190|gb|EFI58344.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 269

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 31/185 (16%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID---------QRNTPM- 236
           ++    QD  K     +     D        +TT+ G+ ++  D         Q N    
Sbjct: 85  QQVAAAQDQLKSDRKDIEQNQQDTAKNSQDIDTTKQGLAVTTADTATNKQAIGQANQRFT 144

Query: 237 --------------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
                         F    +    +    L    +  A++   +I ++G+  A      A
Sbjct: 145 TLDQYEDKGSITVNFANGKATVSKKDKDQLTDFVKSAANTPGYMIEVQGYASAV---GSA 201

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             N RLS +RA +   ++ ++GV    RI   +                ++ NRR+ + +
Sbjct: 202 ALNQRLSSERADAVLAIIQQTGVVPMTRILAPAAMGTTNPVSEDHTRSAHAQNRRVVVTI 261

Query: 339 EDRQG 343
              +G
Sbjct: 262 VVNKG 266


>gi|225848487|ref|YP_002728650.1| OmpA/MotB [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643425|gb|ACN98475.1| putative OmpA/MotB [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 281

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGI----LI---SIIDQRN--------TPMFDKSS 241
           K+I   L+  + D   K V   T    +    +I    I + +            F  +S
Sbjct: 121 KEIELGLNPNIPDKAQKEVKVATEPQEMKPSDVITKNEIKEVKEKQALEEPVRVHFYLNS 180

Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
                E +  L  +   L       + I G+TD     + A ++ +L+L RA +  + L+
Sbjct: 181 VSIKKEYLPYLNVVARYLKTHPDVKVKIVGYTDN--IGSKAYND-KLALKRAETVKKYLV 237

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           K G+  +RI  I G    +  +++        NRR +  V +
Sbjct: 238 KMGIDPNRIL-IEGVGKDKYIVSNKNEIDRFTNRRAEFYVIN 278


>gi|194337185|ref|YP_002018979.1| peptidoglycan-associated lipoprotein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309662|gb|ACF44362.1| peptidoglycan-associated lipoprotein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 173

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  S+    E    L + G  +  +      I GH D    R  +  N  L   R
Sbjct: 68  GDVFFDYDSATLSAEAQEQLHQNGVWMGSNARKGALIEGHCDE---RGTSEYNLALGDRR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A SA + L++ GV+  R+  +S +   R   A  ++   + NRR
Sbjct: 125 AISAKEYLVRFGVAPSRLETVS-YGEERPFAAGSNEESWAKNRR 167


>gi|330947103|gb|EGH47879.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 156

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 242 SIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++ LP T+  + ++ +V+       + I GH D          N ++S +RA S   +  
Sbjct: 1   AMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGSTEANQKISQERAQSVAAIFR 57

Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
            SG+  +R+S+  G      + A+D     + NRR++IL+  +
Sbjct: 58  LSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILMTPQ 99


>gi|85710327|ref|ZP_01041392.1| ompA family protein [Erythrobacter sp. NAP1]
 gi|85689037|gb|EAQ29041.1| ompA family protein [Erythrobacter sp. NAP1]
          Length = 320

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +    L         +   +  + G+TD++        N RLS  RA S 
Sbjct: 201 FDTGRHNLSQQARAELCNAAAQAEATDNALLLVVGYTDST---GSQEVNQRLSERRAGSV 257

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
              L +  G    R+   +G A       +      + NRR+ + V 
Sbjct: 258 VNFLQQQCGWKPWRMLSPTGMAEADPAADNTTAYGKAQNRRVAVNVL 304


>gi|153875680|ref|ZP_02003374.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152067857|gb|EDN66627.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 238

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD-----NWRLSLD 290
           F+   +      I  L+++           I I  HT+   F+ I ++     N  LS +
Sbjct: 129 FNSGKASLKRGAIYQLKEMAAAFKTIAPLKIKIHSHTNIQTFKGIEQEESSKRNQILSEE 188

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
           RA +    L + G+  D I K  G  + +      +    + N+RI+I VE
Sbjct: 189 RADTIADTLARLGIDRDYI-KTFGHGYSQPLTYELTKAALAKNKRIEIKVE 238


>gi|307130110|ref|YP_003882126.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya
           dadantii 3937]
 gi|16116638|emb|CAC82710.1| peptidoglycan-associated lipoprotein [Erwinia chrysanthemi]
 gi|306527639|gb|ADM97569.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya
           dadantii 3937]
          Length = 168

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   FD       P+   +L      L  +    +++ GH D    R    
Sbjct: 55  LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   S NRR
Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163


>gi|114047773|ref|YP_738323.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7]
 gi|113889215|gb|ABI43266.1| OmpA/MotB domain protein [Shewanella sp. MR-7]
          Length = 264

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
                 N++  S       +   R S     +  +        D   G          L 
Sbjct: 2   MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLGGGALL 61

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
             +              +L   S    D  K+     ++ +++   L  LS ++  + +R
Sbjct: 62  GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASLSSKQQASEQR 118

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
                   K++   L+        +  L      G+ +          F   SS      
Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           +  L  + +V+  S+E  + ++G+ D    R     N  LS  R       L+K GV+ +
Sbjct: 163 LPQLDNVVKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219

Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343
           RI+    F              +  +RR+ + ++  QG
Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256


>gi|332877757|ref|ZP_08445498.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684337|gb|EGJ57193.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 660

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + +    +    L KI +V+     + + +R HTD+   R   + N  LS  RA S 
Sbjct: 552 FDYNKANIRKDAAEQLAKIVKVMQEHPTMTVDVRLHTDS---RGSDKYNLALSQRRAKST 608

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            + +   G+ ++RI+   G+   +L          ++  + ANRR + ++
Sbjct: 609 IKWITSHGIKKNRITG-KGYGETQLVNECSNGVPCTEEQHQANRRSEFII 657


>gi|325268738|ref|ZP_08135366.1| major outer membrane protein OmpA family protein [Prevotella
           multiformis DSM 16608]
 gi|324988906|gb|EGC20861.1| major outer membrane protein OmpA family protein [Prevotella
           multiformis DSM 16608]
          Length = 387

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 182 KILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           + +  + +  L  L  K+  S   +  + D +      ETT   +   +++   +  F+ 
Sbjct: 234 EAINAQHQAALDALNAKLRDSEAENARLRDQLANQKPVETTSESVK-QLVNTPVSVFFNI 292

Query: 240 SSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           + S    +  +V +Q + +    +   + + G+ D++        N +LS  RA +    
Sbjct: 293 NKSTIASQKDLVNVQALAKYAKDNNNSLLVTGYADSA--TGTPAYNQKLSERRANTVANE 350

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           L+K GV   +I+ + G              S NRR
Sbjct: 351 LVKMGVENSKITAV-GKGGVETLSPI----SFNRR 380


>gi|149918137|ref|ZP_01906630.1| OmpA family protein [Plesiocystis pacifica SIR-1]
 gi|149821142|gb|EDM80548.1| OmpA family protein [Plesiocystis pacifica SIR-1]
          Length = 158

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLS 288
           ++  +F   S+    +    L  +             + + GHTD    R     N  L 
Sbjct: 52  KDEALFAYDSAKLSEKAERTLALLARCFDTGPMRYQDLLVTGHTDP---RGSDEYNLDLG 108

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           L+RA +    L+  GV + RI   S     R   ++DP +   +R+++I
Sbjct: 109 LERAVAVRDYLVDEGVEDFRIEARS-VGERR--ASNDPEDWDDDRKVEI 154


>gi|149910558|ref|ZP_01899197.1| putative peptidoglycan-associated lipoprotein [Moritella sp. PE36]
 gi|149806401|gb|EDM66374.1| putative peptidoglycan-associated lipoprotein [Moritella sp. PE36]
          Length = 196

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265
           V+ + V+ +  E  +  ++  +  +R+   F         E   +LQ     L  +    
Sbjct: 67  VSIDSVENLTVEEVKKQVMDELR-KRHVVYFGFDQQAVTAEYGELLQDHANFLIDNPAVK 125

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GH D    R     N  L   RA +  + L   GVS  +IS +S +   +    S 
Sbjct: 126 VLIEGHADE---RGTPGYNIALGERRANAVVKYLNNLGVSSSQISTVS-YGEEKPVNTSH 181

Query: 326 PMNS--ANRR 333
              +   NRR
Sbjct: 182 TDAAFTQNRR 191


>gi|238650590|ref|YP_002916442.1| peptidoglycan-associated lipoprotein precursor [Rickettsia
           peacockii str. Rustic]
 gi|238624688|gb|ACR47394.1| peptidoglycan-associated lipoprotein precursor [Rickettsia
           peacockii str. Rustic]
          Length = 155

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSALSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGTKNYNLGLGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+  +R++ IS +   R  +  +     + NRR
Sbjct: 110 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 148


>gi|223041650|ref|ZP_03611847.1| hypothetical protein AM202_0258 [Actinobacillus minor 202]
 gi|223017514|gb|EEF15928.1| hypothetical protein AM202_0258 [Actinobacillus minor 202]
          Length = 162

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   S+   +    L  I + +  +    +++ G+TD       A  N +LS  R
Sbjct: 52  GDFLFDFDKSVLSAKGKSTLNGIAKEIKDTGAKNVTVTGYTDRL---GSATYNQKLSQAR 108

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDIL 337
           A +    L   GVS + I  +  G A+       +   +       NRR+ I+
Sbjct: 109 ANTTKAYLQSQGVSAN-IKAVGRGAANQVKACKGETGQALKDCLKPNRRVHII 160


>gi|171059731|ref|YP_001792080.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170777176|gb|ACB35315.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 534

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S  P+      L  I E L +  +  + I G  D    R   + N+RLS  RA + 
Sbjct: 412 FDTGSDQPMAGEEAKLDGIQEYLDNYPDATLGIDGFAD---IRGSEQFNFRLSDQRAQTV 468

Query: 296 YQVLMKSGVSEDRISKISGFAHHR-------LKIASDPMNS----ANRRIDI 336
             +++  G++  RI    G    +           + P+++    ANRR+ I
Sbjct: 469 QALVLAEGIAAGRIDWAVGVGETQDFSQHGTAPGTAQPVDAGRLRANRRVVI 520


>gi|49182352|gb|AAT57678.1| OmpA [Pasteurella multocida]
          Length = 348

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342
              L+  GV+++ IS  +G         +               + +RR++I V+  +
Sbjct: 292 ANYLVAKGVAQNAISA-TGRGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348


>gi|52425273|ref|YP_088410.1| OmpA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307325|gb|AAU37825.1| OmpA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 368

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   PE    L  I   +A      +S+ G+ D          N +LS  RA + 
Sbjct: 255 FAFGKATLKPEASASLDNIYGEIAQVQSPAVSVAGYADRI---GKEAANLKLSQRRAETV 311

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDRQ 342
              L+  GV+++ I+  +G+        +  D +            +RR+++ V+  +
Sbjct: 312 ANYLVSKGVAQNAITA-TGYGEANPVTGNTCDAVKGRKALIACLAPDRRVEVSVQGTK 368


>gi|60681175|ref|YP_211319.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
 gi|60492609|emb|CAH07381.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
          Length = 366

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 214 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 273

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    I G+ D +     A+ N +LS  RA + Y  
Sbjct: 274 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 331

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  I GF         + +N    R+ IL
Sbjct: 332 LIKEGVSKDQLELI-GFGGTANMFGKNFLN----RVVIL 365


>gi|253688926|ref|YP_003018116.1| OmpA domain protein transmembrane region-containing protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755504|gb|ACT13580.1| OmpA domain protein transmembrane region-containing protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 366

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +    E    L ++   L+        + + G TD        + N  LS
Sbjct: 238 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQGLS 294

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  +++S   G    +    S      P  +       +RR++I 
Sbjct: 295 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 353

Query: 338 VE 339
           V+
Sbjct: 354 VK 355


>gi|251790481|ref|YP_003005202.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya zeae
           Ech1591]
 gi|247539102|gb|ACT07723.1| peptidoglycan-associated lipoprotein [Dickeya zeae Ech1591]
          Length = 168

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   FD       P+   +L      L  +    +++ GH D    R    
Sbjct: 55  LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   S NRR
Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163


>gi|213964189|ref|ZP_03392425.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno]
 gi|213953156|gb|EEB64502.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno]
          Length = 399

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 21/212 (9%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
           N     Q    +       +Q E     +        DL      +++   + N    P 
Sbjct: 197 NIAIGKQGKHADWAGADMREQEEDVAQRIAALESNVADLKGEVANKQNRMNDANGNRIPD 256

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
             E  L    + +  +     S   SG VA ++++                    +  FD
Sbjct: 257 EIESYLNDNYQAKAGNAVANDSDVASGDVAADLIRKGYI----------------SAYFD 300

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            +SS P   +   +  +G+ +  +    I++ G+ D          N  LS  RA +   
Sbjct: 301 FNSSEPQVSSSWSIDFVGKYMKENPNAHITVNGYADEL---GGTNYNTTLSQKRADAVKN 357

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           +L+K+G+  +RI+   G         + P   
Sbjct: 358 LLVKAGIDANRITA-QGKGVDNSVDKNSPKAR 388


>gi|258620771|ref|ZP_05715806.1| Outer membrane protein A [Vibrio mimicus VM573]
 gi|258586969|gb|EEW11683.1| Outer membrane protein A [Vibrio mimicus VM573]
          Length = 213

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+    ++   L ++ + LA  +   I + GHTD +      + N  LS  RA S 
Sbjct: 99  FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNT---GAQKFNDTLSEKRASSV 155

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L++  V+++ I    G+  H     +
Sbjct: 156 KTALVQRQVAQNAIY-TRGYGEHVPACTN 183


>gi|313206073|ref|YP_004045250.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312445389|gb|ADQ81744.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
 gi|325336486|gb|ADZ12760.1| OmpA2 [Riemerella anatipestifer RA-GD]
          Length = 473

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +S +  P++   L     ++     ++   + G TD    R  A  N +LS  RA +
Sbjct: 365 FALNSDVIRPQSFGKLDNAANIIKGMNTSKQYLVIGATDT---RGSASYNKKLSQRRADA 421

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334
             + L+  GVS   +    G     LK    +P        N ANRR+
Sbjct: 422 VVKYLVNKGVSTS-MLVAEGRGQEDLKYPECNPATKCPEWKNEANRRV 468


>gi|45758047|gb|AAO85782.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 378

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 258 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 314

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G++   ++ + G+           D +            +RR++I V+  
Sbjct: 315 ETVANYIVSKGINPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 373

Query: 342 Q 342
           +
Sbjct: 374 K 374


>gi|42521052|ref|NP_966967.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|99034094|ref|ZP_01314208.1| hypothetical protein Wendoof_01001001 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42410793|gb|AAS14901.1| peptidoglycan-associated lipoprotein, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 159

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
                F    S     +   L  + EVL  + +  +++ GHTD    R     N  L   
Sbjct: 41  DKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDN---RGSHEYNLALGAR 97

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMN-------SANRRID 335
           RA +A + ++  +   E+RI   S          +  D  N       + NRR++
Sbjct: 98  RADAAKKFMVSCTPYIENRIKTAS-KGETEPLVNVKDDSRNSKYEKEHAKNRRVE 151


>gi|309244383|gb|ADO52196.1| OprL [Pseudomonas sp. AF23]
 gi|309244387|gb|ADO52198.1| OprL [Pseudomonas sp. AF33]
 gi|309244389|gb|ADO52199.1| OprL [Pseudomonas sp. AF70]
 gi|309244391|gb|ADO52200.1| OprL [Pseudomonas sp. AF76]
 gi|309244393|gb|ADO52201.1| OprL [Pseudomonas sp. BcB122]
 gi|309244395|gb|ADO52202.1| OprL [Pseudomonas sp. BcB153]
          Length = 156

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   +++ G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKANGNRVTLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150


>gi|253702173|ref|YP_003023362.1| peptidoglycan-associated lipoprotein [Geobacter sp. M21]
 gi|251777023|gb|ACT19604.1| peptidoglycan-associated lipoprotein [Geobacter sp. M21]
          Length = 200

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 7/188 (3%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  L      +  +  EE       +  +  A + +      A +   T +    +  V 
Sbjct: 15  GALLSAGCAKKDVVRTEEPISAAQSAPTQAPATQARPEADSGAAQQPITETTPSREQAVT 74

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
               +   TG    +  +     F+  ++    E    L K  E L+      + I G+ 
Sbjct: 75  QETAKEAGTGATQEVQAELQKVYFNFDAADLSEEARGSLSKNAEYLSRQAGIKVRIEGNC 134

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA 330
           D    R     N  L   RA +A   L+  G++ DR+S IS +   +       +   + 
Sbjct: 135 DE---RGSDDYNMALGERRAKAARDYLVNLGIASDRLSTIS-YGEEKPADPGHDEAAWAK 190

Query: 331 NRRIDILV 338
           NRR + ++
Sbjct: 191 NRRAEFVI 198


>gi|163800218|ref|ZP_02194119.1| hypothetical protein 1103602000595_AND4_06044 [Vibrio sp. AND4]
 gi|159175661|gb|EDP60455.1| hypothetical protein AND4_06044 [Vibrio sp. AND4]
          Length = 298

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S+        L      +   +  I+I GHTD   F+     N +LS+ RA S  
Sbjct: 62  FDFDESVIREADAASLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVK 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             L +    +    ++  F   +  +   SD   + NRR
Sbjct: 119 AYLEQQLDLDQYDWEVKHFGESQPLVLGESDQARAENRR 157



 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD  +S   PE +  L      L      I + GHTD          N +L+  RA 
Sbjct: 188 TPHFDFDNSELKPEELSQLDDFIAKLQGLEGSIMVAGHTDQV---GALSYNEQLAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIA--SDPMNSANRR 333
           +    L K+ +   + + ++  F   +  I   S   N+ NRR
Sbjct: 245 NVVAYL-KTKLDPSQFAWEVKAFGELQPVINEVSPQANALNRR 286


>gi|15803127|ref|NP_289158.1| putative outer membrane lipoprotein [Escherichia coli O157:H7
           EDL933]
 gi|15832722|ref|NP_311495.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|168752055|ref|ZP_02777077.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168762397|ref|ZP_02787404.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168773468|ref|ZP_02798475.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168778583|ref|ZP_02803590.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076]
 gi|195940199|ref|ZP_03085581.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807469|ref|ZP_03249806.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208813697|ref|ZP_03255026.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820246|ref|ZP_03260566.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399323|ref|YP_002272076.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217327416|ref|ZP_03443499.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794551|ref|YP_003079388.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           TW14359]
 gi|12517027|gb|AAG57716.1|AE005490_11 putative outer membrane protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362939|dbj|BAB36891.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770670|gb|EDU34514.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188014012|gb|EDU52134.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113]
 gi|189003592|gb|EDU72578.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189367264|gb|EDU85680.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501]
 gi|208727270|gb|EDZ76871.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734974|gb|EDZ83661.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740369|gb|EDZ88051.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160723|gb|ACI38156.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115]
 gi|209762580|gb|ACI79602.1| putative outer membrane protein [Escherichia coli]
 gi|209762582|gb|ACI79603.1| putative outer membrane protein [Escherichia coli]
 gi|209762586|gb|ACI79605.1| putative outer membrane protein [Escherichia coli]
 gi|217319783|gb|EEC28208.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254593951|gb|ACT73312.1| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188940|gb|EFW63599.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str.
           EC1212]
 gi|326344357|gb|EGD68115.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str. 1125]
 gi|326347726|gb|EGD71443.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str. 1044]
          Length = 160

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITP 159


>gi|269123640|ref|YP_003306217.1| OmpA/MotB domain-containing protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314966|gb|ACZ01340.1| OmpA/MotB domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 314

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+ +  I   + I V+  +   L +    I + G+TD        + N  L L+RA S  
Sbjct: 218 FNSNKFILNKKQIDVIDALVPNLQNRE--IIVIGYTDTD---GNDKYNLELGLNRANSVK 272

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339
             L   G+  ++I +  GF  + L   ++ +   S NRR++++V+
Sbjct: 273 VYLENKGIKVNQI-RTVGF--NELITNNNTLENKSLNRRVELIVK 314


>gi|227356882|ref|ZP_03841261.1| OOP family OmpA-OmpF porin [Proteus mirabilis ATCC 29906]
 gi|227162952|gb|EEI47897.1| OOP family OmpA-OmpF porin [Proteus mirabilis ATCC 29906]
          Length = 368

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + S    E    L  +   LA+       + + G+TD          N  LS
Sbjct: 240 RSDVLFNYNKSSLKAEGQEALNGLYNELANIDPTQGRVVVIGYTDRI---GSQNYNLPLS 296

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  + IS         ++G       A   L     P     RR+
Sbjct: 297 EKRAQSVVDYLVSKGIPANSISAEGRGKENPVTGNTCDNVKARAALIDCLAPD----RRV 352

Query: 335 DILVE 339
           +I ++
Sbjct: 353 EIEIQ 357


>gi|197284675|ref|YP_002150547.1| outer membrane protein A [Proteus mirabilis HI4320]
 gi|194682162|emb|CAR41796.1| outer membrane protein A [Proteus mirabilis HI4320]
          Length = 362

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + S    E    L  +   LA+       + + G+TD          N  LS
Sbjct: 234 RSDVLFNYNKSSLKAEGQEALNGLYNELANIDPTQGRVVVIGYTDRI---GSQNYNLPLS 290

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  + IS         ++G       A   L     P     RR+
Sbjct: 291 EKRAQSVVDYLVSKGIPANSISAEGRGKENPVTGNTCDNIKARAALIDCLAPD----RRV 346

Query: 335 DILVE 339
           +I ++
Sbjct: 347 EIEIQ 351


>gi|26248968|ref|NP_755008.1| putative outer membrane lipoprotein [Escherichia coli CFT073]
 gi|91211939|ref|YP_541925.1| putative outer membrane lipoprotein [Escherichia coli UTI89]
 gi|110642766|ref|YP_670496.1| putative outer membrane lipoprotein [Escherichia coli 536]
 gi|117624826|ref|YP_853739.1| putative outer membrane lipoprotein [Escherichia coli APEC O1]
 gi|191174577|ref|ZP_03036072.1| OmpA family protein [Escherichia coli F11]
 gi|218559525|ref|YP_002392438.1| outer membrane lipoprotein [Escherichia coli S88]
 gi|227888171|ref|ZP_04005976.1| OmpA family protein [Escherichia coli 83972]
 gi|237706807|ref|ZP_04537288.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300986825|ref|ZP_07177814.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|300990725|ref|ZP_07179310.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|301050475|ref|ZP_07197354.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|306812477|ref|ZP_07446675.1| putative outer membrane lipoprotein [Escherichia coli NC101]
 gi|331658753|ref|ZP_08359695.1| YfiB [Escherichia coli TA206]
 gi|26109374|gb|AAN81576.1|AE016764_258 Putative lipoprotein yfiB precursor [Escherichia coli CFT073]
 gi|91073513|gb|ABE08394.1| putative lipoprotein YfiB precursor [Escherichia coli UTI89]
 gi|110344358|gb|ABG70595.1| putative lipoprotein YfiB precursor [Escherichia coli 536]
 gi|115513950|gb|ABJ02025.1| putative outer membrane lipoprotein [Escherichia coli APEC O1]
 gi|190905150|gb|EDV64794.1| OmpA family protein [Escherichia coli F11]
 gi|218366294|emb|CAR04045.2| putative outer membrane lipoprotein [Escherichia coli S88]
 gi|222034307|emb|CAP77048.1| lipoprotein yfiB [Escherichia coli LF82]
 gi|226899847|gb|EEH86106.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834811|gb|EEJ45277.1| OmpA family protein [Escherichia coli 83972]
 gi|281179651|dbj|BAI55981.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|294492477|gb|ADE91233.1| lipoprotein, OmpA family [Escherichia coli IHE3034]
 gi|300297822|gb|EFJ54207.1| OmpA family protein [Escherichia coli MS 185-1]
 gi|300305693|gb|EFJ60213.1| OmpA family protein [Escherichia coli MS 200-1]
 gi|300407877|gb|EFJ91415.1| OmpA family protein [Escherichia coli MS 45-1]
 gi|305854515|gb|EFM54953.1| putative outer membrane lipoprotein [Escherichia coli NC101]
 gi|307554618|gb|ADN47393.1| putative lipoprotein YfiB precursor [Escherichia coli ABU 83972]
 gi|307625845|gb|ADN70149.1| putative outer membrane lipoprotein [Escherichia coli UM146]
 gi|312947177|gb|ADR28004.1| putative outer membrane lipoprotein [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315284819|gb|EFU44264.1| OmpA family protein [Escherichia coli MS 110-3]
 gi|315290954|gb|EFU50319.1| OmpA family protein [Escherichia coli MS 153-1]
 gi|323951196|gb|EGB47072.1| OmpA family protein [Escherichia coli H252]
 gi|323957028|gb|EGB52754.1| OmpA family protein [Escherichia coli H263]
 gi|324005821|gb|EGB75040.1| OmpA family protein [Escherichia coli MS 57-2]
 gi|324012443|gb|EGB81662.1| OmpA family protein [Escherichia coli MS 60-1]
 gi|331053335|gb|EGI25364.1| YfiB [Escherichia coli TA206]
          Length = 160

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|294782985|ref|ZP_06748310.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480677|gb|EFG28453.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA]
          Length = 141

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           +K +          ++I+       FD   S+  P+   +L  + + +  +   ++I GH
Sbjct: 46  IKNIDITNIEAPKEMTIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYELTIEGH 105

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
           TD+       + N  LS  RA +    L++ G+ EDRI
Sbjct: 106 TDSV---GSNQYNIGLSRRRAEAVKAKLIEFGLPEDRI 140


>gi|300940943|ref|ZP_07155467.1| OmpA family protein [Escherichia coli MS 21-1]
 gi|300454267|gb|EFK17760.1| OmpA family protein [Escherichia coli MS 21-1]
          Length = 160

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|260772528|ref|ZP_05881444.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           metschnikovii CIP 69.14]
 gi|260611667|gb|EEX36870.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           metschnikovii CIP 69.14]
          Length = 179

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++        +L      L+ +    +++ GH D    R     N  L   RA + 
Sbjct: 79  FAFDNATIARSYEEMLAAHAAYLSKNPSLKVTVEGHADE---RGTPEYNIALGERRANAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            + L   GV  ++IS +S +   +  +   ++   + NRR
Sbjct: 136 AKYLEALGVQANQISIVS-YGEEKPLVLGQTEEAYAKNRR 174


>gi|257092706|ref|YP_003166347.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045230|gb|ACV34418.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 225

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD + +   P     L ++          + I  GHTD     + A  N +LS  RA +
Sbjct: 111 LFDFNKATLRPAGKAKLDEVVAKAGAIKLEVIIAVGHTD--RIGSDAY-NQKLSERRAAA 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP----MNSA-------NRRIDI 336
             Q L+  G+  +R+    G          D      +         +RR+DI
Sbjct: 168 VKQYLVSKGIDANRVY-TEGKGKKNPVTKPDQCLGKTSPKVIACLQPDRRVDI 219


>gi|241662342|ref|YP_002980702.1| peptidoglycan-associated lipoprotein [Ralstonia pickettii 12D]
 gi|240864369|gb|ACS62030.1| peptidoglycan-associated lipoprotein [Ralstonia pickettii 12D]
          Length = 173

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 73  FDFDSYSVKPEYQGLLGQHSRYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 130 RRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIV 172


>gi|33594231|ref|NP_881875.1| putative peptidoglycan-associated lipoprotein [Bordetella pertussis
           Tohama I]
 gi|33598303|ref|NP_885946.1| putative peptidoglycan-associated lipoprotein [Bordetella
           parapertussis 12822]
 gi|33603213|ref|NP_890773.1| putative peptidoglycan-associated lipoprotein [Bordetella
           bronchiseptica RB50]
 gi|33564306|emb|CAE43607.1| putative peptidoglycan-associated lipoprotein [Bordetella pertussis
           Tohama I]
 gi|33566861|emb|CAE39076.1| putative peptidoglycan-associated lipoprotein [Bordetella
           parapertussis]
 gi|33568844|emb|CAE34602.1| putative peptidoglycan-associated lipoprotein [Bordetella
           bronchiseptica RB50]
 gi|332383645|gb|AEE68492.1| putative peptidoglycan-associated lipoprotein [Bordetella pertussis
           CS]
          Length = 165

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNW 285
           SI+ Q+ +  FD  S     +   +++     LA +  + I I G+TD    R  A  N 
Sbjct: 53  SILAQQRSVYFDFDSYTVSEQYRGLVETHARYLASNNQQRIKIEGNTDE---RGGAEYNL 109

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            L   RA +  +++   GVS+++I  IS G    +   +S+   + NRR DI+
Sbjct: 110 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRADIV 162


>gi|260889796|ref|ZP_05901059.1| OmpA family protein [Leptotrichia hofstadii F0254]
 gi|260860402|gb|EEX74902.1| OmpA family protein [Leptotrichia hofstadii F0254]
          Length = 231

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 226 ISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASP 276
           I  +D+    +      F  +           ++   E L +     E   I G+ D + 
Sbjct: 89  IRFVDKDGKIVKMIIRGFPVNKEEVTEIEKREIKDEIEYLLNVFLENEEFVIVGYADET- 147

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRR 333
                ++   LSL RA    + L ++G+ +D +ISKI+G +       +D       NRR
Sbjct: 148 ----EKNKKELSLSRAEKMAEFLKQNGLRKDIKISKITGKSSENPVDTNDTEIGRYNNRR 203

Query: 334 IDILVEDRQ 342
           ++I +++ +
Sbjct: 204 VEIFLKNGK 212


>gi|255008463|ref|ZP_05280589.1| outer membrane porin F precursor [Bacteroides fragilis 3_1_12]
 gi|313146191|ref|ZP_07808384.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12]
 gi|313134958|gb|EFR52318.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12]
          Length = 373

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
             ++      + L     ++S   S L         +   T+  +    +       F  
Sbjct: 221 GAQVDQSAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEVEVAGPRAVFFQI 280

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
             S      +V +Q   ++L  + +    + G+ D +     A+ N +LS  RA + Y  
Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKVAGYADEA--TGSAKWNQKLSEARAQAVYDA 338

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           L+K GVS+D++  I GF         + +N    R+ IL
Sbjct: 339 LIKEGVSKDQLELI-GFGGTANMFGKNFLN----RVVIL 372


>gi|26990523|ref|NP_745948.1| OmpA/MotB domain protein [Pseudomonas putida KT2440]
 gi|24985500|gb|AAN69412.1|AE016577_7 periplamic phosphate-binding protein [Pseudomonas putida KT2440]
          Length = 435

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +  +Q++ E L  +        + G  D   +P R        LS  R
Sbjct: 334 FQEGSASLDNKALRDVQRVTEYLRQAGKLQGKAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L + GV    + +++G         +  +     NRR+++ V
Sbjct: 389 AQAVRRELARGGVE---VLQVTGMGDELPVAGNELEQGRLRNRRVEVWV 434


>gi|329935272|ref|ZP_08285238.1| hypothetical protein SGM_6755 [Streptomyces griseoaurantiacus M045]
 gi|329305095|gb|EGG48954.1| hypothetical protein SGM_6755 [Streptomyces griseoaurantiacus M045]
          Length = 218

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 59/196 (30%), Gaps = 20/196 (10%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
                  ++ G        +E S     +   P L       +   K L      I S +
Sbjct: 21  SAPTPALADGGDPSRPPGTVETSPPPTVDPNSPGLKLADGATLAAAKVLD-----IKSVV 75

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHS 262
             L  +   +      T           +   +F K S    PE    +  I E +   +
Sbjct: 76  EDLGGEERREDTNENVT--------FALQAEVLFPKDSPKLNPEARSRIDAIAEEIKKQN 127

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
            + + + G TD             LS  RA + +  L    +  D   ++ G++      
Sbjct: 128 AQAVRVFGFTDNL---GSYAHGLVLSKRRAEAVHDELASR-LDGDVTFEVRGYSEDYPIA 183

Query: 323 AS--DPMNSANRRIDI 336
            +  +     NRR+++
Sbjct: 184 DNTSEQGRRKNRRVEV 199


>gi|313886427|ref|ZP_07820146.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924108|gb|EFR34898.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
          Length = 647

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD++S    PE    L  +  +L  +    + +  +TD    +     N +LS  RA S 
Sbjct: 520 FDRAS--LRPEGKKSLDYLITLLEQNPEVRLELSSNTDR---KGSQAYNQKLSQRRAQSV 574

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
              L+  G++ DR+    G+   R  + +  M + 
Sbjct: 575 VDYLIAKGIAADRLEA-RGYGKERPYVVTKGMAAR 608


>gi|150024135|ref|YP_001294961.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770676|emb|CAL42140.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 272

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP----- 276
           G  I + D     +F K SS         L+KI ++L         I+GH   +P     
Sbjct: 156 GDRIFLGD----VLFQKGSSKLNVNAKNDLEKIAKMLLKYKNLQFEIQGHVCCTPPYQKE 211

Query: 277 -FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
                 R    LS++RA   Y   +   +S++R+    G+   +        +   RR++
Sbjct: 212 AIDRDTRKR-ELSINRAKVVYNFFVAKKISKNRMI-YKGYGTGKPLGKEPQYD---RRVE 266

Query: 336 ILV 338
           +++
Sbjct: 267 LVI 269



 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA----HHRLK 321
           + I G+ D    R     N++LS +RA    + L++SG+    I  I G         + 
Sbjct: 59  VQIYGYCDD---RGKESYNFKLSNNRASIIQKKLVESGIKNKIIVTIEGKGRVMIDDDII 115

Query: 322 IASDPMNSANRRIDILV 338
                + S NRR+D++V
Sbjct: 116 ENLPEVRSKNRRVDVVV 132


>gi|170722232|ref|YP_001749920.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619]
 gi|169760235|gb|ACA73551.1| OmpA/MotB domain protein [Pseudomonas putida W619]
          Length = 435

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +   +++ + L  +        + G  D   +P R        LS  R
Sbjct: 334 FQEGSASLDNKALRDTKRVADYLRQAGKLQNKAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L + GV    + +++G         +  +     NRR+++ V
Sbjct: 389 AQAVRRELARDGVE---VLEVTGMGDELPVAGNELEQGRLRNRRVEVWV 434


>gi|116252498|ref|YP_768336.1| OmpA family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257146|emb|CAK08241.1| putative OmpA family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 729

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + ++       +E   I GHTDA       + N  LS  R
Sbjct: 614 FATGSADIPMTQARTLRKVADAISQVLEKDPSETFLIEGHTDAV---GSDQSNLILSDQR 670

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G++ + +    G+    LK+ +      NRR+ I
Sbjct: 671 AESVANVLSDVYGIAPENL-ATQGYGESYLKVNTSAPEQENRRVTI 715


>gi|254461106|ref|ZP_05074522.1| peptidoglycan-associated lipoprotein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677695|gb|EDZ42182.1| peptidoglycan-associated lipoprotein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 172

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F+  +S    +  ++L      L  +S     I GH D          N  L   R
Sbjct: 62  DRVLFEVDTSTLTGQGRLILDGQTRWLTTNSDYTAIIEGHADEQ---GTREYNVALGERR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A      L+  GV   R+ ++  +   R     + +   + NRR
Sbjct: 119 ANEVRDYLVSKGVPSSRL-RVVSYGKERPIEICSQEGCYAKNRR 161


>gi|153951751|ref|YP_001398162.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939197|gb|ABS43938.1| putative chemotaxis protein MotB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 317

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 115/328 (35%), Gaps = 66/328 (20%)

Query: 33  WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88
           W I YAD M  L+  F+++     +         K I+   N     L         E++
Sbjct: 12  W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
             E  ++  I   +   +   S  L + ++                    Q    + ++ 
Sbjct: 62  KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANII 101

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
              +  KDL  + D +   +K+    L  L K+       ++  Q   +K+ +   GL+ 
Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156

Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256
           +N+ K +  +       I+I ++  +       +FDK S +        L+KI       
Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLSAEVLFDKDSYVLKNGVKASLRKILSEYFDA 213

Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309
                ++ ++    I I GHTD+         N  LS  RAY     +     S+   ++
Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKFQKL 269

Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336
              SG +       +   +   +RRI+I
Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297


>gi|15838494|ref|NP_299182.1| outer membrane protein P6 precursor [Xylella fastidiosa 9a5c]
 gi|9106989|gb|AAF84702.1|AE004009_9 outer membrane protein P6 precursor [Xylella fastidiosa 9a5c]
          Length = 186

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E   VL    + L +     I+++G+TD    R     N  L   R  S 
Sbjct: 83  FDFDKDDVKKEFQTVLGCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 139

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 140 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 182


>gi|16130526|ref|NP_417096.1| probable positive effector of YfiN activity, OM lipoprotein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109406|ref|AP_003186.1| predicted outer membrane lipoprotein [Escherichia coli str. K-12
           substr. W3110]
 gi|170082209|ref|YP_001731529.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901765|ref|YP_002927561.1| putative outer membrane lipoprotein [Escherichia coli BW2952]
 gi|254037681|ref|ZP_04871739.1| outer membrane lipoprotein [Escherichia sp. 1_1_43]
 gi|256024868|ref|ZP_05438733.1| putative outer membrane lipoprotein [Escherichia sp. 4_1_40B]
 gi|300949000|ref|ZP_07163053.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|300957389|ref|ZP_07169603.1| OmpA family protein [Escherichia coli MS 175-1]
 gi|301644047|ref|ZP_07244063.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|307139326|ref|ZP_07498682.1| putative outer membrane lipoprotein [Escherichia coli H736]
 gi|331643321|ref|ZP_08344452.1| YfiB [Escherichia coli H736]
 gi|140651|sp|P07021|YFIB_ECOLI RecName: Full=Putative lipoprotein yfiB; Flags: Precursor
 gi|1788957|gb|AAC75654.1| probable positive effector of YfiN activity, OM lipoprotein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1800010|dbj|BAA16490.1| predicted outer membrane lipoprotein [Escherichia coli str. K12
           substr. W3110]
 gi|169890044|gb|ACB03751.1| predicted outer membrane lipoprotein [Escherichia coli str. K-12
           substr. DH10B]
 gi|226839305|gb|EEH71326.1| outer membrane lipoprotein [Escherichia sp. 1_1_43]
 gi|238862713|gb|ACR64711.1| predicted outer membrane lipoprotein [Escherichia coli BW2952]
 gi|260448321|gb|ACX38743.1| OmpA/MotB domain protein [Escherichia coli DH1]
 gi|300315824|gb|EFJ65608.1| OmpA family protein [Escherichia coli MS 175-1]
 gi|300451527|gb|EFK15147.1| OmpA family protein [Escherichia coli MS 116-1]
 gi|301077592|gb|EFK92398.1| OmpA family protein [Escherichia coli MS 146-1]
 gi|309702985|emb|CBJ02316.1| outer membrane lipoprotein [Escherichia coli ETEC H10407]
 gi|315137223|dbj|BAJ44382.1| putative outer membrane lipoprotein [Escherichia coli DH1]
 gi|331036792|gb|EGI09016.1| YfiB [Escherichia coli H736]
          Length = 160

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|304414298|ref|ZP_07395666.1| outer membrane protein A [Candidatus Regiella insecticola LSR1]
 gi|304283512|gb|EFL91908.1| outer membrane protein A [Candidatus Regiella insecticola LSR1]
          Length = 389

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + S   PE +  L  +   L+        + + G+TD          N  LS  RA
Sbjct: 267 LFDFNKSALKPEGLTQLDDLYSQLSSINPKNGSVLVLGYTDRM---GKEAYNQALSQRRA 323

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDILVEDR 341
            S    L+  G+  D+IS   G              D   +A       +RR+ I V+  
Sbjct: 324 QSVMDYLITKGIPADKISA-RGMGEANPVTGSTCGDDMKRAAKIECLAPDRRVVIEVKGE 382

Query: 342 Q 342
           +
Sbjct: 383 K 383


>gi|269123146|ref|YP_003305723.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268314472|gb|ACZ00846.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2073

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL----ISIIDQRNTPM--FDK 239
            +++ ++L +  KK+      L  +N   G   +  R  I     I + +     +  +  
Sbjct: 1912 IEQNEKLINQNKKLEEDNDRLRRENDRIGDEIKELRERIKAIEKIKMNEDDLYTLDGYRL 1971

Query: 240  SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                       +L  I   L  +     I I G+TD     +    N  L L RA    +
Sbjct: 1972 GIHELTKSQEEMLMNIVRELNENYKNRKIYITGYTDNV---SGENLNLELGLKRANVVAK 2028

Query: 298  VLMKSGVSED---RISKISGFAHHRLKIASDPMNSANRRIDI 336
             L + G+      R    SG+ +      S    S+NRR++I
Sbjct: 2029 KLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRSSNRRVEI 2070


>gi|110634419|ref|YP_674627.1| OmpA/MotB [Mesorhizobium sp. BNC1]
 gi|110285403|gb|ABG63462.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 703

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S+       P+   V   + EVL  +  E   I GHTDA         N  LS  R
Sbjct: 588 FEFGSASIAESEIPKLEGVANAMLEVLERNPAETFLIEGHTDAV---GSDVANLALSDRR 644

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +  + L    G+  + +    G+    LKI +      NRR+ I
Sbjct: 645 ADAVAEALSNVFGIPPENLV-TQGYGEQYLKINTQERERENRRVAI 689


>gi|82703826|ref|YP_413392.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
 gi|82411891|gb|ABB76000.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 175

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   E   ++    + L       + ++G+TD    R     N  L   RA + 
Sbjct: 72  FDFDSYVVKDEFRSLVAAHAKYLREHPNARVLLQGNTDE---RGSREYNLALGQRRADAV 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
              +  SG  E +I  +S     +       +   + NRR+DI
Sbjct: 129 KYAMTLSGAQEGQIEAVS-LGEEKPHAMGHDEAAWAENRRVDI 170


>gi|260774296|ref|ZP_05883211.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
 gi|260611257|gb|EEX36461.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVV 251
           +A K     +  V    ++ +        + + +     T     F    S     +   
Sbjct: 178 MAYKFGQPATPRVVTEQIEVIQERVIEVPVQVEVAKAARTDFLLPFALGKSTLEDLSYFY 237

Query: 252 LQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L ++ +V+  +  +++ + G TD++   + A +N ++S  RA +A Q L   G+   RI+
Sbjct: 238 LNEVVDVMRTNPALVAHLVGRTDST--GSDAINN-KISAQRAQAASQYLQSQGIDAKRIN 294

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVE 339
            +S  A  R            R + I+++
Sbjct: 295 -VSAVADSRPLTQG--SADIERSVQIILK 320


>gi|254409577|ref|ZP_05023358.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183574|gb|EDX78557.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 17/249 (6%)

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           +ID+++ E     +   + G  +  +    L+   F+ ++  Q     N L +       
Sbjct: 264 RIDVNVREPSQLKTQIAEDGELSSSEASAVLQGIDFFTASEAQQWMSDNILEKRIGSTAA 323

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKR------KKRLQDLAKKISSTLSGLVADN 210
           +         + +       P    K            +    +LA ++S     + A  
Sbjct: 324 VLVLAGRLNDVPQAPQSLFSPQFLTKAATNTETLISLVRADNPELADRLSGKGETVAAVP 383

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG---EVLAHSTEVIS 267
            V             I  ++ R    F   S+    +    L ++    +     T  + 
Sbjct: 384 QVSAQQITAAPD---IGNLEVRGEVKFGVGSATLTSQGQQTLNQLTNEIQEFNPQTLAVR 440

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GHT  +     A  N  LS  RA      L   G+  + ++   G   ++      P 
Sbjct: 441 VIGHTSKT---GAATLNQTLSQQRAQVVVNYLKNRGLKHNFVA--EGKGFNQPLSGIPPT 495

Query: 328 NSANRRIDI 336
           +   +R +I
Sbjct: 496 DPRQQRTEI 504


>gi|269965412|ref|ZP_06179532.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830058|gb|EEZ84287.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 339

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+             L+ +   ++       I I GHTD       +  N  +S  RA  
Sbjct: 211 FEFGQKTLSRGQKATLEALYSYVSVDDRVTKILIDGHTDNV---GSSLTNLSVSRTRAEQ 267

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L++ GV E  + +           +++ +N  + NRR+ +
Sbjct: 268 VTNALIELGVDES-MIETRAHGSRYPIASNNSVNGQAKNRRVTL 310


>gi|154173716|ref|YP_001407729.1| flagellar motor protein MotB [Campylobacter curvus 525.92]
 gi|112803650|gb|EAU00994.1| flagellar motor protein [Campylobacter curvus 525.92]
          Length = 242

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 18  KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77
           KK    +        W + YADF+++L+A F+ ++ I+A + +  KA++  F        
Sbjct: 3   KKCKKQECPA--GEKWAVPYADFLSLLLALFIALYAISAANTEKVKALKTEFIKIFDYPA 60

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
           + +      Q   E +++N     +++    N+   +     +    Q  E     + + 
Sbjct: 61  SKTTDNIVSQGNKESNAKNDAKSQLEQLKATNAEQEQTIKELKAMLDQSEEQISLDMPDG 120

Query: 138 QQSEHCKNSLTRD 150
              +  +  +T  
Sbjct: 121 VTFKAGETQVTDQ 133



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
             +K  +  +   +KE       K +L+ L K  ++     + +  +K +L ++      
Sbjct: 59  PASKTTDNIVSQGNKESNAKNDAKSQLEQL-KATNAEQEQTIKE--LKAMLDQSEEQ--- 112

Query: 226 ISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIAR 282
           IS+ D  +   F    +    + +I  ++   ++     + IS+   G+T          
Sbjct: 113 ISL-DMPDGVTFKAGETQVTDQNSIEFIKTTAKIANKLPKNISVEIRGYTGG---STSGL 168

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +++ L   RA +  Q+L   G+   R+  +S       K  S   +    R+ I 
Sbjct: 169 ESFELGYKRAMNVAQILADDGLDTSRMRIVSYGNEPAPKSVSGSDS---NRVQIF 220


>gi|91223208|ref|ZP_01258474.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           alginolyticus 12G01]
 gi|91192021|gb|EAS78284.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           alginolyticus 12G01]
          Length = 313

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+             L+ +   ++       I I GHTD       +  N  +S  RA  
Sbjct: 185 FEFGQKTLSRGQKATLEALYSYVSVDDRVTKILIDGHTDNV---GSSLTNLSVSRTRAEQ 241

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
               L++ GV E  + +           +++ +N  + NRR+ +
Sbjct: 242 VTNALIELGVDES-MIETRAHGSRYPIASNNSVNGQAKNRRVTL 284


>gi|327480142|gb|AEA83452.1| putative outer membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 209

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274
            FE  R   ++ +    ++        + LP T+  + ++ +++       + I GH D+
Sbjct: 58  RFEVERRDNVLVVTAPVDSSFNPDRPGMLLPVTLGPITRVAKLVEKDEKTAVVILGHADS 117

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332
           +        N  +S +RA +   +   SG   DR+ +I G      + A+D     + NR
Sbjct: 118 T---GADDVNRTISRERASAVAAIFRLSGFKHDRL-RIRGLGSDMPRAANDSKEGRAMNR 173

Query: 333 RIDILVEDR 341
           R+++++  +
Sbjct: 174 RVEMVLAPQ 182


>gi|312270717|gb|ADQ55759.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAAHTEIVNLGLENPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|307249694|ref|ZP_07531674.1| hypothetical protein appser4_4980 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858260|gb|EFM90336.1| hypothetical protein appser4_4980 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 164

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  E + + G+TD        + N  LS  R
Sbjct: 22  GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 78

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           A      L++ GV+ + I+ +  G A         P           NRR+++
Sbjct: 79  ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 130


>gi|209968914|gb|ACJ02818.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAAHTEIVNLGLENPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +  D +            +RR++I V+  
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360

Query: 342 Q 342
           +
Sbjct: 361 K 361


>gi|281421188|ref|ZP_06252187.1| OmpA family protein [Prevotella copri DSM 18205]
 gi|281404723|gb|EFB35403.1| OmpA family protein [Prevotella copri DSM 18205]
          Length = 660

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D   +     +   L ++  +L  +  V I +  H D   ++  +  N  LS  R
Sbjct: 521 DNIFYDFDKATLTEASTTALDQLVTLLKENPHVTIELSAHCD---YKGNSEYNKHLSQRR 577

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           A S    L+K G+ ++R++ + G+   + K 
Sbjct: 578 AQSVVDYLIKHGIEKERLTPV-GYGKEKPKN 607


>gi|284007877|emb|CBA73797.1| peptidoglycan-associated lipoprotein [Arsenophonus nasoniae]
          Length = 180

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
             +   N   F        PE   +L +    L  +    I++ GH D    +     N 
Sbjct: 70  QELQSNNIVYFGFDKYDVTPEYAQLLDQHATFLRGNPSVKITVEGHADE---KGTPEYNI 126

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV+ ++I+ +S +   +  +    +   + NRR
Sbjct: 127 ALGERRANAVKMYLQSKGVNGEQIAIVS-YGKEKPAVLGHDESAYAKNRR 175


>gi|157158147|ref|YP_001463924.1| putative outer membrane lipoprotein [Escherichia coli E24377A]
 gi|157162081|ref|YP_001459399.1| putative outer membrane lipoprotein [Escherichia coli HS]
 gi|170019118|ref|YP_001724072.1| putative outer membrane lipoprotein [Escherichia coli ATCC 8739]
 gi|188495277|ref|ZP_03002547.1| OmpA family protein [Escherichia coli 53638]
 gi|194430167|ref|ZP_03062668.1| OmpA family protein [Escherichia coli B171]
 gi|209920080|ref|YP_002294164.1| putative outer membrane lipoprotein [Escherichia coli SE11]
 gi|218555184|ref|YP_002388097.1| putative outer membrane lipoprotein [Escherichia coli IAI1]
 gi|218696229|ref|YP_002403896.1| putative outer membrane lipoprotein [Escherichia coli 55989]
 gi|253772501|ref|YP_003035332.1| outer membrane lipoprotein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162575|ref|YP_003045683.1| putative outer membrane lipoprotein [Escherichia coli B str.
           REL606]
 gi|260845286|ref|YP_003223064.1| putative outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
 gi|260856694|ref|YP_003230585.1| putative outer membrane lipoprotein [Escherichia coli O26:H11 str.
           11368]
 gi|261227488|ref|ZP_05941769.1| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255682|ref|ZP_05948215.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283877|ref|YP_003500695.1| OmpA family protein [Escherichia coli O55:H7 str. CB9615]
 gi|293415876|ref|ZP_06658516.1| lipoprotein yfiB [Escherichia coli B185]
 gi|293448955|ref|ZP_06663376.1| lipoprotein yfiB [Escherichia coli B088]
 gi|297517107|ref|ZP_06935493.1| putative outer membrane lipoprotein [Escherichia coli OP50]
 gi|300819922|ref|ZP_07100105.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|300825119|ref|ZP_07105212.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300905075|ref|ZP_07122884.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|300921149|ref|ZP_07137528.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300925597|ref|ZP_07141467.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300930670|ref|ZP_07146056.1| OmpA family protein [Escherichia coli MS 187-1]
 gi|301305750|ref|ZP_07211837.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|301326724|ref|ZP_07220038.1| OmpA family protein [Escherichia coli MS 78-1]
 gi|307315083|ref|ZP_07594667.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|309794116|ref|ZP_07688540.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|331654062|ref|ZP_08355062.1| YfiB [Escherichia coli M718]
 gi|331669355|ref|ZP_08370201.1| YfiB [Escherichia coli TA271]
 gi|331678596|ref|ZP_08379270.1| YfiB [Escherichia coli H591]
 gi|157067761|gb|ABV07016.1| OmpA family protein [Escherichia coli HS]
 gi|157080177|gb|ABV19885.1| OmpA family protein [Escherichia coli E24377A]
 gi|169754046|gb|ACA76745.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739]
 gi|188490476|gb|EDU65579.1| OmpA family protein [Escherichia coli 53638]
 gi|194411792|gb|EDX28113.1| OmpA family protein [Escherichia coli B171]
 gi|209762578|gb|ACI79601.1| putative outer membrane protein [Escherichia coli]
 gi|209762584|gb|ACI79604.1| putative outer membrane protein [Escherichia coli]
 gi|209913339|dbj|BAG78413.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218352961|emb|CAU98761.1| putative outer membrane lipoprotein [Escherichia coli 55989]
 gi|218361952|emb|CAQ99553.1| putative outer membrane lipoprotein [Escherichia coli IAI1]
 gi|242378200|emb|CAQ32975.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)]
 gi|253323545|gb|ACT28147.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974476|gb|ACT40147.1| predicted outer membrane lipoprotein [Escherichia coli B str.
           REL606]
 gi|253978643|gb|ACT44313.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)]
 gi|257755343|dbj|BAI26845.1| predicted outer membrane lipoprotein [Escherichia coli O26:H11 str.
           11368]
 gi|257760433|dbj|BAI31930.1| predicted outer membrane lipoprotein [Escherichia coli O103:H2 str.
           12009]
 gi|290763750|gb|ADD57711.1| OmpA family protein [Escherichia coli O55:H7 str. CB9615]
 gi|291322045|gb|EFE61474.1| lipoprotein yfiB [Escherichia coli B088]
 gi|291432065|gb|EFF05047.1| lipoprotein yfiB [Escherichia coli B185]
 gi|300403026|gb|EFJ86564.1| OmpA family protein [Escherichia coli MS 84-1]
 gi|300411899|gb|EFJ95209.1| OmpA family protein [Escherichia coli MS 115-1]
 gi|300418292|gb|EFK01603.1| OmpA family protein [Escherichia coli MS 182-1]
 gi|300461467|gb|EFK24960.1| OmpA family protein [Escherichia coli MS 187-1]
 gi|300522391|gb|EFK43460.1| OmpA family protein [Escherichia coli MS 119-7]
 gi|300527510|gb|EFK48572.1| OmpA family protein [Escherichia coli MS 107-1]
 gi|300839004|gb|EFK66764.1| OmpA family protein [Escherichia coli MS 124-1]
 gi|300846584|gb|EFK74344.1| OmpA family protein [Escherichia coli MS 78-1]
 gi|306905512|gb|EFN36046.1| OmpA/MotB domain protein [Escherichia coli W]
 gi|308122021|gb|EFO59283.1| OmpA family protein [Escherichia coli MS 145-7]
 gi|315061919|gb|ADT76246.1| predicted outer membrane lipoprotein [Escherichia coli W]
 gi|320198378|gb|EFW72980.1| Integral membrane protein YfiB [Escherichia coli EC4100B]
 gi|320640787|gb|EFX10285.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           G5101]
 gi|320646132|gb|EFX15077.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str.
           493-89]
 gi|320651429|gb|EFX19830.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str.
           H 2687]
 gi|320657034|gb|EFX24857.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662698|gb|EFX30042.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667515|gb|EFX34439.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156259|gb|EFZ42418.1| ompA family protein [Escherichia coli EPECa14]
 gi|323173078|gb|EFZ58709.1| ompA family protein [Escherichia coli LT-68]
 gi|323377501|gb|ADX49769.1| OmpA/MotB domain protein [Escherichia coli KO11]
 gi|323960537|gb|EGB56166.1| OmpA family protein [Escherichia coli H489]
 gi|323971452|gb|EGB66688.1| OmpA family protein [Escherichia coli TA007]
 gi|324016591|gb|EGB85810.1| OmpA family protein [Escherichia coli MS 117-3]
 gi|324120062|gb|EGC13938.1| OmpA family protein [Escherichia coli E1167]
 gi|331047444|gb|EGI19521.1| YfiB [Escherichia coli M718]
 gi|331063023|gb|EGI34936.1| YfiB [Escherichia coli TA271]
 gi|331073426|gb|EGI44747.1| YfiB [Escherichia coli H591]
          Length = 160

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|325202801|gb|ADY98255.1| ompA family protein [Neisseria meningitidis M01-240149]
          Length = 242

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L  +  + + + GHTD   F    + N  LS  RAY 
Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTD---FMGSDKYNQALSERRAYV 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184


>gi|157829031|ref|YP_001495273.1| peptidoglycan-associated lipoprotein precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933755|ref|YP_001650544.1| peptidoglycan-associated lipoprotein [Rickettsia rickettsii str.
           Iowa]
 gi|157801512|gb|ABV76765.1| peptidoglycan-associated lipoprotein precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908842|gb|ABY73138.1| peptidoglycan-associated lipoprotein [Rickettsia rickettsii str.
           Iowa]
          Length = 155

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSDLSPKAKEALERQACWLSKHPEVKVTVEGHCDE---RGTKEYNLGLGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+  +R++ IS +   R  +  +     + NRR
Sbjct: 110 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 148


>gi|254882132|ref|ZP_05254842.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013736|ref|ZP_05285862.1| putative outer membrane protein [Bacteroides sp. 2_1_7]
 gi|254834925|gb|EET15234.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 480

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 378 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRAGF 435

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 436 ITAELEQRGIPAKRIIRVSKGGIADYMPVEAN 467


>gi|90581709|ref|ZP_01237497.1| hypothetical protein VAS14_19366 [Vibrio angustum S14]
 gi|90437124|gb|EAS62327.1| hypothetical protein VAS14_19366 [Vibrio angustum S14]
          Length = 261

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275
            E     +L   +D +    F  + S  LP+    L+   E+L   +   + + G+TD+ 
Sbjct: 121 VELKERFLLYMEVDNQ----FALNKSTLLPKYRESLRYAAEILKRQSHWHLQLTGYTDSQ 176

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
                 + N+ L L+RA +    L+++GV  ++I  +     ++    +      N R
Sbjct: 177 ---GHIQGNYMLGLERANAVKDSLIENGVDPNQI-SVFSVGENQAVADNTLTQQLNNR 230


>gi|227329084|ref|ZP_03833108.1| outer membrane protein A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 361

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +    E    L ++   L+        + + G TD        + N  LS
Sbjct: 233 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQGLS 289

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  +++S   G    +    S      P  +       +RR++I 
Sbjct: 290 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 348

Query: 338 VE 339
           V+
Sbjct: 349 VK 350


>gi|197337791|ref|YP_002158113.1| OmpA family protein [Vibrio fischeri MJ11]
 gi|197315043|gb|ACH64492.1| OmpA family protein [Vibrio fischeri MJ11]
          Length = 306

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   S  +      L +    +      I+I GHTD   ++   + N +LSL RA S  
Sbjct: 60  FEFDKSEIMEGDFPSLNQFVRDIEKLKGRIAIVGHTD---YQGSEKYNEQLSLRRADSIK 116

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
             L+K   +++   +I  +   +  I    +  N+ANRR
Sbjct: 117 TYLLKQLNADNYEWEIKYYGEKKPLIEGRTLEANAANRR 155



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   S+   +  + L K+   L   T  I I GHTD   ++     N +L+ +R+ +  
Sbjct: 189 FDFDKSVLKEKDKIELDKLALKLEGLTGRILIAGHTD---YQGSVSYNEKLAKERSIAVQ 245

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
           + L         + ++  F      I    +  N+ NRR
Sbjct: 246 EYLKTRVDPTQFVWEVKSFGESEPIIQEHTLKANAENRR 284


>gi|315633444|ref|ZP_07888734.1| lipoprotein PlpD [Aggregatibacter segnis ATCC 33393]
 gi|315477486|gb|EFU68228.1| lipoprotein PlpD [Aggregatibacter segnis ATCC 33393]
          Length = 273

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD +      + + V+  I + L  +  + +++ G+TD        R N  LS  R
Sbjct: 141 GDFLFDFNKDTLTAQGVEVIDNIAQQLKSAKAKEVTVDGYTDRL---GSDRYNLALSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN-----SANRRIDI 336
           A      L + G+    I  I  G A+                + NRR++I
Sbjct: 198 ADRVKARLAELGLKA-HIVAIGHGKANQVKACDGSGQALKDCLAPNRRVEI 247


>gi|76789924|gb|ABA55070.1| OmpA family protein [Riemerella anatipestifer]
          Length = 384

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    E   V+ +        +   + + GHTD       A  N  LS  RA + 
Sbjct: 282 FDFDRSDLTAEARSVVTQAANYAKSGAPTRVLVVGHTDT---SGNAAYNQGLSNRRARTV 338

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
              L+  GV+   +  + G    +   A+        NRR  +DI
Sbjct: 339 ADALVAQGVNGG-VISLDGKGETQPAKATGDGVREPLNRRATVDI 382


>gi|294141706|ref|YP_003557684.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293328175|dbj|BAJ02906.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 335

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +PL     +L ++   L       + ++G+TDA      +  N +LS  RA S 
Sbjct: 223 FDFDSEVPLQ--THILVEVARHLNQYPSASVVLQGYTDAV---GPSGYNLKLSKRRAVSV 277

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
              L K  VS+ +I  I        ++ +  +   + NRR+ I +
Sbjct: 278 AAYLKKLEVSDAQI-SIEALGETHPELDNITEEHRANNRRVYISI 321


>gi|126730858|ref|ZP_01746667.1| OmpA domain protein [Sagittula stellata E-37]
 gi|126708574|gb|EBA07631.1| OmpA domain protein [Sagittula stellata E-37]
          Length = 318

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    + I  L  + + L+ +    I   GHTDA+      R     SL RA +A
Sbjct: 213 FRSGSTDLGGDDIASLDALAQYLSDNPTRRILFVGHTDATGSLEANRGV---SLRRAQAA 269

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
              L  +      RI    G  +     ++       ANRR++ ++   +
Sbjct: 270 VAYLRSRHDTDAGRIGA-EGAGYLAPVASNLTAEGREANRRVEAVLISTE 318


>gi|85375193|ref|YP_459255.1| hypothetical protein ELI_11830 [Erythrobacter litoralis HTCC2594]
 gi|84788276|gb|ABC64458.1| hypothetical protein ELI_11830 [Erythrobacter litoralis HTCC2594]
          Length = 293

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 7/111 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E    L +       +   +  + G+TDA         N  LS  RA   
Sbjct: 182 FDSGKWRLDGEAQRDLCQAAAQAEATDNALLLVVGYTDAD---GSEELNQELSERRAARV 238

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDRQG 343
              L +  G    R+   +G A       +  P   + NRR+ + +   + 
Sbjct: 239 TNYLQQECGWKPWRMLTPTGMAEADPAADNYTPQGKAQNRRVAVNILVSKA 289


>gi|269104725|ref|ZP_06157421.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161365|gb|EEZ39862.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 188

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 229 IDQRNTP--MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            D++N+   +F   S++     +  L+K  + L    E  I ++G+  ASP  N A  N 
Sbjct: 59  TDEKNSVHVLFANDSTVIPETYMAQLKKTAQFLETFPETHIELKGY--ASPVGNSAH-NQ 115

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRI 334
            LS  RA +  Q L+  GV+ DRI  + GF      I ++   ++N   RR+
Sbjct: 116 YLSDTRAANVRQQLIDFGVAADRIKTV-GFGDADP-IQAETSEASNTLSRRV 165


>gi|170693151|ref|ZP_02884312.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170142149|gb|EDT10316.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 242

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 229 IDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARD 283
               +  +F    S     LP     L  +   +        I + GHTD          
Sbjct: 120 FALESDALFPFGKSAADTMLPSAKAQLDDVAARIRKHEQVSAIEVVGHTDRL---GPESL 176

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRID 335
           N  LSL RA +    L+  G+    I +  G    + +   +D    A       +R + 
Sbjct: 177 NGPLSLARANTVRDYLIAHGLDGS-IIQAKGVGASQPRTNCADREGRALIACLQPDRYVS 235

Query: 336 ILVEDRQ 342
           I V+ R+
Sbjct: 236 ITVQGRK 242


>gi|325851839|ref|ZP_08171004.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|327312557|ref|YP_004327994.1| OmpA family protein [Prevotella denticola F0289]
 gi|325484681|gb|EGC87594.1| OmpA family protein [Prevotella denticola CRIS 18C-A]
 gi|326945377|gb|AEA21262.1| OmpA family protein [Prevotella denticola F0289]
          Length = 382

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 183 ILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            +  + +  L  L  K+  S   +  + D +      ETT   +   +++   +  F+ +
Sbjct: 230 AINAQHQAALDALNAKLRDSEAENARLRDQLANQKPVETTSESVK-QLVNTPVSVFFNIN 288

Query: 241 SSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S    +  +V +Q + +    +   + + G+ D++        N +LS  RA +    L
Sbjct: 289 KSTIASQKDLVNVQALAKYAKDNNNSLLVTGYADSA--TGTPAYNQKLSERRANTVANEL 346

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           +K GV  ++I+ + G              S NRR
Sbjct: 347 VKMGVENNKITAV-GKGGVETLSPI----SFNRR 375


>gi|319902016|ref|YP_004161744.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319417047|gb|ADV44158.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 404

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           + D  N   F+   +    +++ ++ KI +++   T     I G TDA   +   + N  
Sbjct: 283 LCDLFNNIYFEFDKADITEKSVSIINKIAQIMMTDTNKRYLITGCTDA---KGSLQYNMG 339

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFA---HHRLKIASDPMNSANRRI--DIL 337
           LS  RA +  + L + GV  + + K  G      +  + AS+ +   +R+I  +I+
Sbjct: 340 LSQRRANAVIKALTQQGVPSE-MLKSRGVGKKISYAPQDASNEIREGDRKIIVEII 394


>gi|227111637|ref|ZP_03825293.1| outer membrane protein A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 361

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +    E    L ++   L+        + + G TD        + N  LS
Sbjct: 233 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQGLS 289

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  +++S   G    +    S      P  +       +RR++I 
Sbjct: 290 EKRAQSVVDYLVAKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 348

Query: 338 VE 339
           V+
Sbjct: 349 VK 350


>gi|215487943|ref|YP_002330374.1| putative outer membrane lipoprotein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266015|emb|CAS10427.1| predicted outer membrane lipoprotein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 160

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA        + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASIGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|157369997|ref|YP_001477986.1| outer membrane protein A [Serratia proteamaculans 568]
 gi|157321761|gb|ABV40858.1| OmpA domain protein transmembrane region-containing protein
           [Serratia proteamaculans 568]
          Length = 358

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 27/135 (20%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S    E    L ++   L+          + G+TDA       + N +LS
Sbjct: 228 KSDVLFNFNKSTLKAEGQQALDQLYTQLSAMDPKDGSAVVLGYTDAV---GSDQYNQKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------------PMNSANRRID 335
             RA S    L+  G+  ++IS   G         +                 + +RR++
Sbjct: 285 EKRAQSVVDYLVSKGIPSEKISA-RGMGEADSVTGNTCGYKAGRATKAQIACLAPDRRVE 343

Query: 336 I-------LVEDRQG 343
           I       +V   QG
Sbjct: 344 IEVKGIKDVVTQPQG 358


>gi|332669857|ref|YP_004452865.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332338895|gb|AEE45478.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484]
          Length = 183

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 15/144 (10%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
             ++        V+ V    T  G     +      +F  +S    P     L  + E +
Sbjct: 44  DGSVDAYTTQGSVESVAPPETDGGTTTLTVGSD--VLFAYASHDLDPAAAAALAALVEQV 101

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
             +   +++ GHTD+   R     N  LS  RA +   VL       D +  + G     
Sbjct: 102 -PAGAQVAVVGHTDS---RGGDAVNLPLSSARAEAVAAVLRS--TRPDLVLAVGGAGSTE 155

Query: 320 LK-------IASDPMNSANRRIDI 336
                           + NRR+++
Sbjct: 156 PVADEYVAGAPDLAAMARNRRVEL 179


>gi|254437176|ref|ZP_05050670.1| OmpA family protein [Octadecabacter antarcticus 307]
 gi|198252622|gb|EDY76936.1| OmpA family protein [Octadecabacter antarcticus 307]
          Length = 189

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I GHTD++        N  LS  RA     V   +G    R+  I GF   R    +   
Sbjct: 121 IYGHTDSNA---SDEYNIDLSNRRASMVAGVAQDAG---TRVVDIRGFGERRPAATNATQ 174

Query: 327 -MNSANRRIDI 336
              + NRR+++
Sbjct: 175 DGRAQNRRVEV 185


>gi|149911588|ref|ZP_01900201.1| outer membrane protein OmpA [Moritella sp. PE36]
 gi|149805367|gb|EDM65379.1| outer membrane protein OmpA [Moritella sp. PE36]
          Length = 303

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAY 293
           +F  +S+     +   L K+ + ++ S   I++    +TD          N +LS  RA 
Sbjct: 195 LFKFNSAEISDSS--ALAKLAKKMSASHVEINVEIVAYTDT---SGPEAYNLKLSKKRAE 249

Query: 294 SAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337
           +     +K GV++  I+    G A+      +      NRR+DI+
Sbjct: 250 AVRDYFIKQGVNKQVINTAWKGEANPIASNKTRAGRIKNRRVDII 294


>gi|325134964|gb|EGC57596.1| ompA family protein [Neisseria meningitidis M13399]
 gi|325136954|gb|EGC59551.1| ompA family protein [Neisseria meningitidis M0579]
 gi|325145176|gb|EGC67458.1| ompA family protein [Neisseria meningitidis M01-240013]
          Length = 242

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +  + + + GHTD   F    + N  LS  RAY 
Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTD---FMGSDKYNQALSERRAYV 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184


>gi|299773289|gb|ADJ38719.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 367

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  GV+   ++ + G+        +               + +RR++I V+  
Sbjct: 304 ETVANYIVFKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|162455833|ref|YP_001618200.1| OmpA-like domain-containing protein [Sorangium cellulosum 'So ce
           56']
 gi|161166415|emb|CAN97720.1| OmpA-like outer membrane domain protein [Sorangium cellulosum 'So
           ce 56']
          Length = 689

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+  LPE+  ++Q + E L H  E  +I ++GH D    R+    N +L+  RA +
Sbjct: 561 FATGSAEILPESFGIVQAVAETLKHHPEFTMIEVQGHADE---RSADAYNLKLTQARADA 617

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI-LVEDRQG 343
               L + GV+++ + +  G+  +     +    +   NRR++  +V   +G
Sbjct: 618 VAAALAQRGVNKNSV-RSMGYGEYCPIDPAHNAAAWEKNRRVEFKVVRTDKG 668


>gi|85708815|ref|ZP_01039881.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
 gi|85690349|gb|EAQ30352.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
          Length = 378

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    E   +L   +       +  + + GHTD          N  L+  R  S
Sbjct: 271 FFDFDESAITSEAATILDNAVTAYSNCGSARVMLAGHTDTV---GSQSYNLDLAARRNAS 327

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             Q L   GV+   +     F    L++ +        NRR++I
Sbjct: 328 VQQYLTGRGVARS-MIASEAFGESDLRVPTADGVRELQNRRVEI 370


>gi|83593747|ref|YP_427499.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83576661|gb|ABC23212.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 347

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRA 292
           F  SSS      + V+ +I +    +  V+ + GH+ +             N R+S +RA
Sbjct: 240 FASSSSDLDNNDLRVIAEIADYQRENGGVLRVIGHSSSRTGDMDPVSHKILNLRVSAERA 299

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
            +  Q LM +GV    I  +   A  + +         + NRR +I +E
Sbjct: 300 DAVAQALMSAGVFPANIV-VGAVADDQKEYREVMPSGEAFNRRAEIFLE 347


>gi|70731289|ref|YP_261030.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
 gi|68345588|gb|AAY93194.1| OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length = 460

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L ++ + L         +++ G  DA   P R        LS  R
Sbjct: 359 FEEGSASLDNKARQDLNRVLDYLRQHGKMNRQVTLAGFGDAKNDPARAAL-----LSKLR 413

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L+KSGV      +I GF       A+  D     NRR+++ V
Sbjct: 414 AMAVRRELVKSGVV---FREIRGFGAELPVAANSADEGRIKNRRVEVWV 459


>gi|312959447|ref|ZP_07773964.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311286164|gb|EFQ64728.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 381

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++ LP T+    ++ + +    +  + + GH DA+     ++    L+ +RA S   +  
Sbjct: 197 AMLLPVTLGPFTRVAKAVEADPKTAVLVLGHVDATGTAPASQ---ALTKERAQSIASIFS 253

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
            SG+ +DR+  + G      + A+D     + NRR++I+   R
Sbjct: 254 LSGLKQDRLM-LRGMGDLMPRAANDSNQGRALNRRMEIMFTQR 295


>gi|255690559|ref|ZP_05414234.1| major outer membrane protein OmpA [Bacteroides finegoldii DSM
           17565]
 gi|260624020|gb|EEX46891.1| major outer membrane protein OmpA [Bacteroides finegoldii DSM
           17565]
          Length = 395

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 215 VLFETTRTGILISIIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270
           V  E T     + I D    P    F   S    P+  + L  +   +  S     +I G
Sbjct: 275 VEIEDTEE---VVIADTNIAPRTVFFKIGSDKLSPQEEMNLSYLANKIKESPNTTYTING 331

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           + D++        N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 332 YADSATGTPAF--NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|83746170|ref|ZP_00943224.1| Peptidoglycan-associated lipoprotein [Ralstonia solanacearum UW551]
 gi|207744075|ref|YP_002260467.1| peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum IPO1609]
 gi|83727136|gb|EAP74260.1| Peptidoglycan-associated lipoprotein [Ralstonia solanacearum UW551]
 gi|206595479|emb|CAQ62406.1| peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum IPO1609]
          Length = 172

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 217 FETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            + TR  +        N+P+      FD  S     E   +L +    L +H+   + I+
Sbjct: 51  VDVTRDELT-----DPNSPLAKRSVYFDFDSYTVKSEYQGLLSQHARYLQSHNQRKVLIQ 105

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G+TD    R  +  N  L   RA +  + L   GV + ++  +S G    +     +   
Sbjct: 106 GNTDE---RGTSEYNLALGQKRAEAVRRALSSQGVPDSQMEAVSLGKEKPQATGHDEESW 162

Query: 329 SANRRIDIL 337
           + NRR DI+
Sbjct: 163 AQNRRSDIV 171


>gi|300704849|ref|YP_003746452.1| peptidoglycaN-associated lipoprotein, protein pal, component of
           tol-pal system [Ralstonia solanacearum CFBP2957]
 gi|299072513|emb|CBJ43863.1| Peptidoglycan-associated lipoprotein, protein pal, component of
           tol-pal system [Ralstonia solanacearum CFBP2957]
          Length = 172

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 217 FETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            + TR  +        N+P+      FD  S     E   +L +    L +H+   + I+
Sbjct: 51  VDVTRDELT-----DPNSPLAKRSVYFDFDSYTVKSEYQGLLSQHARYLQSHNQRKVLIQ 105

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G+TD    R  +  N  L   RA +  + L   GV + ++  +S G    +     +   
Sbjct: 106 GNTDE---RGTSEYNLALGQKRAEAVRRALSSQGVPDSQMEAVSLGKEKPQATGHDEESW 162

Query: 329 SANRRIDIL 337
           + NRR DI+
Sbjct: 163 AQNRRSDIV 171


>gi|197337668|ref|YP_002157566.1| OmpA/MotB domain protein [Vibrio fischeri MJ11]
 gi|197314920|gb|ACH64369.1| OmpA/MotB domain protein [Vibrio fischeri MJ11]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS     ++  LQK+  +L       + + G+TD+         N RLS  RA S 
Sbjct: 231 FSFASSKVNTGSLE-LQKVLHILKKYPQSNLILTGNTDSI---GSYASNQRLSQKRANSV 286

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
            +     G+S  RI+ +          ++      S N R+D
Sbjct: 287 ARFFTDRGISISRIT-VRADGETNPVASNITAEGRSQNLRVD 327


>gi|87307403|ref|ZP_01089548.1| probable MotB-like protein [Blastopirellula marina DSM 3645]
 gi|87290143|gb|EAQ82032.1| probable MotB-like protein [Blastopirellula marina DSM 3645]
          Length = 257

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294
           F   S+    E    LQ   +      + I IRGH    P    A   D++ L  +R  +
Sbjct: 123 FPGESAKLTDEMKRDLQVQAQEFGGKPQKIEIRGHAAPKPLAPGAPFVDHYDLGYERCRA 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVED 340
               L+  G+   RI   +   +  + I +DP+ S  N R+++ + D
Sbjct: 183 VMNFLVSLGIDPRRIRISTAGKNEPIHIGTDPLKSKQNPRVEVFLLD 229



 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 53/166 (31%), Gaps = 11/166 (6%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT-KKAIEQYFNPFGKNLMTASK 81
            DD    +  W + + D M++L+ FF+++  ++    +   +A+ + F     +  + + 
Sbjct: 3   DDDDAVGIPEWVVTFGDMMSLLLTFFIMLVSMSEIKKEEHFQALVESFRRQFGHDDSMNS 62

Query: 82  GIFDEQNPP----------ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
            +     P            R+ +       D+         ++                
Sbjct: 63  VVAGTAQPRNSHLSNLATMGRAKRFSTQEGGDKVKAPVGDSPQVRIIRPGSSTAVGTVIY 122

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           F   +++ ++  K  L   +++     +  ++      +      P
Sbjct: 123 FPGESAKLTDEMKRDLQVQAQEFGGKPQKIEIRGHAAPKPLAPGAP 168


>gi|328884733|emb|CCA57972.1| secreted protein [Streptomyces venezuelae ATCC 10712]
          Length = 205

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 20/185 (10%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            D    +  + +     +   P L       +   K L      I   +     +   + 
Sbjct: 27  ADDPPGSAGDAAPPPAIDSNAPGLMLPDGATLAPAKVLD-----IKQIVEEEGGEQRRQD 81

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD 273
              + T           +   +F K+S+   P     +  I   +    +  + + G TD
Sbjct: 82  TNVDVT--------FALQAEVLFPKNSAKLTPAANARIAAIAAEIKKLGSGRVRVFGFTD 133

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331
                       +LS +RA +  QVL +S + +     I G++        A++     N
Sbjct: 134 NL---GTYAHGLKLSKERAVAVQQVLARS-LDQGTTFDIRGYSEDYPIADNATEEGRKKN 189

Query: 332 RRIDI 336
           RR++I
Sbjct: 190 RRVEI 194


>gi|257464737|ref|ZP_05629108.1| lipoprotein Plp4 [Actinobacillus minor 202]
 gi|257450397|gb|EEV24440.1| lipoprotein Plp4 [Actinobacillus minor 202]
          Length = 282

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD        +   V+  +   L  S  + + + G+TD          N  LS  R
Sbjct: 141 GDFLFDFDKDTLTTKGKEVVDNVAAQLKSSKAQQVKVAGYTDRL---GSVNYNLDLSQRR 197

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
           A      L++ GV   +I  +  G A+       +   +       NRR+++
Sbjct: 198 ANMVKARLVQQGV-TAQIEAVGYGKANQVKACDGESGQALRDCLRPNRRVEV 248


>gi|218690723|ref|YP_002398935.1| putative outer membrane lipoprotein [Escherichia coli ED1a]
 gi|218428287|emb|CAR09211.2| putative outer membrane lipoprotein [Escherichia coli ED1a]
 gi|315298676|gb|EFU57930.1| OmpA family protein [Escherichia coli MS 16-3]
          Length = 160

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A          G          G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157


>gi|83644283|ref|YP_432718.1| outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
 gi|83632326|gb|ABC28293.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein [Hahella chejuensis KCTC 2396]
          Length = 169

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     LQ+    +   +   + + GH D +     A  N +LS DRA S 
Sbjct: 64  FAFDSSKIGPGEQSDLQQWASYIQEGAYNRVEVHGHADDT---GSADYNRKLSADRANST 120

Query: 296 YQV---LMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
            Q    L+   V       +      +     + +     NRR++I+
Sbjct: 121 VQALRNLVSGQVD----FVVVPHGEEQPLAENSDEQGRQLNRRVEIV 163


>gi|77920564|ref|YP_358379.1| peptidoglycan-associated lipoprotein [Pelobacter carbinolicus DSM
           2380]
 gi|77546647|gb|ABA90209.1| peptidoglycan-associated lipoprotein [Pelobacter carbinolicus DSM
           2380]
          Length = 190

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +       F+       PE   +L    E L  + +  + I G+ D    R     N  L
Sbjct: 80  VASLERIYFNFDRYDLSPEAQAILINNAEYLKANPDQKVRIEGYCDE---RGSDEYNLAL 136

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
              RA +A + L   GV+ DR+S IS +          ++   + NRR +
Sbjct: 137 GERRALAAQKYLESLGVAGDRLSVIS-YGEEMPLDPAQNEDAYAMNRRAE 185


>gi|73540500|ref|YP_295020.1| OmpA/MotB [Ralstonia eutropha JMP134]
 gi|72117913|gb|AAZ60176.1| OmpA/MotB [Ralstonia eutropha JMP134]
          Length = 170

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    PE   +L +  + L  +    I I+G+TD    R  +  N  L   RA + 
Sbjct: 70  FDFDSYSVKPEYQSMLGEHAKYLGSNKGRKILIQGNTDE---RGTSEYNLALGQKRAEAV 126

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            + L   GVS+ ++  +S G    +     +   + NRR DI
Sbjct: 127 RRSLATMGVSDSQMEAVSLGKEKPKSTGHDEAAWAENRRADI 168


>gi|167765326|ref|ZP_02437439.1| hypothetical protein BACSTE_03714 [Bacteroides stercoris ATCC
           43183]
 gi|167696954|gb|EDS13533.1| hypothetical protein BACSTE_03714 [Bacteroides stercoris ATCC
           43183]
          Length = 391

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D  +   F+    +    +   L ++  +L    +    I G+TDA   R  +  N  LS
Sbjct: 273 DLLDNIYFEFDKDVLTAASEKTLDRLAGLLKSYPDARFLITGYTDA---RGSSAYNTDLS 329

Query: 289 LDRAYSAYQVLMKSGVSED--RISKISGFAHHRLKIASDPMNSANRRI 334
             RA   Y+ L++ GV     +   I   A      A + +   +R++
Sbjct: 330 NRRAKRVYEALLERGVPAAMLKWHGIGKRASIIPVAAGNSVREGDRKV 377


>gi|330818872|ref|YP_004351089.1| Outer membrane protein [Burkholderia gladioli BSR3]
 gi|327374414|gb|AEA65766.1| Outer membrane protein [Burkholderia gladioli BSR3]
          Length = 231

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           NT  F   SS    +    L     VL      + I G+TD +     +R N RLS  RA
Sbjct: 129 NTVYFYVDSSQLDAKARAGLD----VLPIEASHVQIDGYTDNT---GTSRYNRRLSERRA 181

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            +  + LM  GV   +I+  +         ++      + NRR D++
Sbjct: 182 LAVKRYLMVRGVDAAKIT-TTAHGESGAVASNHTAHGRALNRRADVM 227


>gi|261391899|emb|CAX49359.1| outer-membrane protein class 4 [Neisseria meningitidis 8013]
 gi|325132932|gb|EGC55609.1| ompA family protein [Neisseria meningitidis M6190]
 gi|325138919|gb|EGC61469.1| ompA family protein [Neisseria meningitidis ES14902]
          Length = 240

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L  +  + + + GHTD   F    + N  LS  RAY 
Sbjct: 102 LFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTD---FMGSDKYNQALSERRAYV 158

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 159 VANNLVSNGVPVSRISAV-GLGESQ 182


>gi|150024778|ref|YP_001295604.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771319|emb|CAL42788.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 283

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
             L   +A        F+  + G +I I    N  +F  +S      +  ++  + + L 
Sbjct: 147 EILKQFLASEKSIFEKFKNAKKGDIIVI----NNILFQINSEKLANGSSQIIIDLLDYLT 202

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           ++ +  I I G+   +P  N  +    LS  RA   +  L+K+G++  R+    G+    
Sbjct: 203 NNPKIKIEIHGNICCNPNTNDVK----LSYRRAKYIFDYLIKNGIATSRLG-YHGYGSAN 257

Query: 320 L----KIASDPMNSANRRIDILVEDR 341
                   S     ANRR++IL+ ++
Sbjct: 258 PIYKIPEKSYQEELANRRVEILIIEK 283


>gi|121635480|ref|YP_975725.1| outer membrane protein class 4 [Neisseria meningitidis FAM18]
 gi|161870687|ref|YP_001599860.1| outer membrane protein class 4 [Neisseria meningitidis 053442]
 gi|218768845|ref|YP_002343357.1| outer membrane protein class 4 [Neisseria meningitidis Z2491]
 gi|60392859|sp|P0A0V2|OMP4_NEIMA RecName: Full=Outer membrane protein class 4; Flags: Precursor
 gi|120867186|emb|CAM10954.1| outer membrane protein class 4 [Neisseria meningitidis FAM18]
 gi|121052853|emb|CAM09205.1| outer membrane protein class 4 [Neisseria meningitidis Z2491]
 gi|161596240|gb|ABX73900.1| outer membrane protein class 4 [Neisseria meningitidis 053442]
 gi|254670228|emb|CBA05418.1| outer membrane protein class 4 [Neisseria meningitidis alpha153]
 gi|254672496|emb|CBA05992.1| outer membrane protein class 4 [Neisseria meningitidis alpha275]
 gi|308388587|gb|ADO30907.1| outer membrane protein class 4 [Neisseria meningitidis alpha710]
 gi|319411080|emb|CBY91483.1| outer-membrane protein class 4 [Neisseria meningitidis WUE 2594]
 gi|325142982|gb|EGC65338.1| ompA family protein [Neisseria meningitidis 961-5945]
 gi|325198932|gb|ADY94388.1| ompA family protein [Neisseria meningitidis G2136]
 gi|325208795|gb|ADZ04247.1| ompA family protein [Neisseria meningitidis NZ-05/33]
          Length = 242

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L  +  + + + GHTD   F    + N  LS  RAY 
Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTD---FMGSDKYNQALSERRAYV 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184


>gi|254228801|ref|ZP_04922224.1| OmpA family protein [Vibrio sp. Ex25]
 gi|151938748|gb|EDN57583.1| OmpA family protein [Vibrio sp. Ex25]
          Length = 281

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD    +   +    L  +   ++       I I GHTD       +  N  +S  RA  
Sbjct: 153 FDFGQKVLSRKQQETLAALNSYVSVDDRVTKILIDGHTDNV---GSSLANLSVSRTRAEQ 209

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
             + L++ G+ +  + +           +++     + NRR+ +
Sbjct: 210 VAEALVELGIDKS-MIETRAHGSRYPIASNNSTKGQAKNRRVTL 252


>gi|154174442|ref|YP_001408069.1| putative chemotaxis protein MotB [Campylobacter curvus 525.92]
 gi|112802901|gb|EAU00245.1| putative chemotaxis protein MotB [Campylobacter curvus 525.92]
          Length = 366

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 120/346 (34%), Gaps = 37/346 (10%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVM-------WIINATDDDTKKAIEQYFNPFGK 74
            ID +  N  ++ + YAD M  L+  F+++       ++++      K+           
Sbjct: 2   KIDKSDQNSSTFWVSYADLMAGLLFVFMLLIGAIVVKYVLSQNTLADKEQ-AIILALANL 60

Query: 75  NLMTASKGIFDEQNPPERSSQNKI-DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
                     D+ N   ++   KI D +++   + +   ++I +  QK +    EN    
Sbjct: 61  KDEQGKNFTLDQLNSALKNELAKISDENLNLKRSNDIFVIQIDALKQKLKQLIEENADAN 120

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            S +  +    +   +      DL       +  N      L  ++        ++ R  
Sbjct: 121 ASIADLNASILSLNQKMIVLNDDLAARDSALEEANASNEKNLAKIAFLLEQVSAKEARYD 180

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP--------MFDKSSSI-- 243
           +L + ++ T + +     ++  +    +  +  SI    N+         +FDK  +   
Sbjct: 181 ELLRDLNVTKNRIKNLTGIRVKVISELKDKLGGSIAIDPNSGALKLSSSVLFDKGKAELK 240

Query: 244 ----------PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
                           V+L      ++ + + I I G TD+         N  LS  RAY
Sbjct: 241 EEVKEELKATLEKYFDVLLND--PQISKNIDQIMIEGFTDS---DGSYLYNLELSQRRAY 295

Query: 294 SAYQVLMKSGVSE--DRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           +    +          ++   SG +++ L +     +  A+RRI+I
Sbjct: 296 AVMDFINSYNKDARLQKLLVASGRSYNELIMRDGAEDKDASRRIEI 341


>gi|291278011|gb|ADD91480.1| outer mebrane protein A [Riemerella columbina]
          Length = 326

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   +   PE+   L +   ++   +     + GHTDA   +  A  N RLS +RA S
Sbjct: 244 FFNFDKATIRPESNGKLDEAANIIKSSNGGTFLVTGHTDA---KGNANYNLRLSRERAAS 300

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GVS  ++  
Sbjct: 301 VVAALEARGVSSSQLKS 317


>gi|218887447|ref|YP_002436768.1| peptidoglycan-associated lipoprotein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758401|gb|ACL09300.1| peptidoglycan-associated lipoprotein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 170

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E+  VL++  +VL       + + GH D    R     N  L   RA +A
Sbjct: 68  FDFDKFDLKAESKEVLKQKADVLKKFPSIRVLVEGHCDE---RGTQEYNLALGERRARAA 124

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           Y+ L+ SGV+  ++  IS +   R  +   ++   S NRR
Sbjct: 125 YEYLVMSGVNAGQLEMIS-YGEERPAVEGHNEAAWSKNRR 163


>gi|197284482|ref|YP_002150354.1| peptidoglycan-associated outer membrane lipoprotein [Proteus
           mirabilis HI4320]
 gi|194681969|emb|CAR41402.1| peptidoglycan-associated lipoprotein [Proteus mirabilis HI4320]
          Length = 165

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           PL      +  +     D +  +  T  G  A+ + +  L +  +T I+           
Sbjct: 15  PLVAVAACSSNKNDDQTDTSNNVPVTEQGPTAEELARQQLEQLKQTNIV----------Y 64

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E   +L      L  +    I+I GH D    R     N  L   RA + 
Sbjct: 65  FGFDKYDVTSEYAQLLDAHAAFLRANPSVRITIEGHADE---RGTPEYNIALGERRANAV 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D+++ +S +   +  +    +   + NRR
Sbjct: 122 KMYLQGKGVSADQLAIVS-YGKEKPAVLGHDEAAYAKNRR 160


>gi|148361303|ref|YP_001252510.1| hypothetical protein LPC_3277 [Legionella pneumophila str. Corby]
 gi|148283076|gb|ABQ57164.1| hypothetical protein LPC_3277 [Legionella pneumophila str. Corby]
          Length = 294

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +      V L++I + +      + I I GH D S       +N  +S  RA S
Sbjct: 190 FGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDS--GRKGYNN-AISQYRAES 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294


>gi|52843156|ref|YP_096955.1| hypothetical protein lpg2962 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630267|gb|AAU29008.1| sodium-type flagellar protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 299

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S +      V L++I + +      + I I GH D S       +N  +S  RA S
Sbjct: 195 FGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDS--GRKGYNN-AISQYRAES 251

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
               L++ GV   R   I+     +    +D     +ANRR+ + +  +
Sbjct: 252 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 299


>gi|77459872|ref|YP_349379.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1]
 gi|77383875|gb|ABA75388.1| phosphate ABC transporter substrate-binding protein, PhoT family
           [Pseudomonas fluorescens Pf0-1]
          Length = 444

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L ++ + + H   +   +++ G  DA   P R        LS  R
Sbjct: 343 FEEGSASLDNKARQDLARVFDYIKHHDKTDRAVTLVGFGDAKDDPARADL-----LSKLR 397

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L+K+GV    + ++ GF        +  D     NRR+++ V
Sbjct: 398 AMAVRRELVKNGVV---LREVRGFGALMPVATNSGDEGRIKNRRVEVWV 443


>gi|326336146|ref|ZP_08202318.1| OmpA/MotB domain protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691655|gb|EGD33622.1| OmpA/MotB domain protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 394

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 12/186 (6%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVAD--NI 211
            +  +LE+ +   E       S    LA K  ++   +      +I   +   + +    
Sbjct: 209 SEGKELERKLQAAEERIAKAESDVASLAKKLDEKEDRMIDTNGNRIPDEIENYLNEKYGN 268

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270
                   T       I        FD +SS P   ++     +   L  ++   ++I G
Sbjct: 269 SANAQNYATGDTARDLIEKGYINVYFDFNSSKPQKSSLWAADFVANYLKQNSGSSVNIVG 328

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           + D          N +LS  RA +  Q+L+  G+   R+    G    +      P    
Sbjct: 329 YADEI---GGENYNQKLSNKRAEAIKQLLVDRGIDASRL-SFEGKGEDKTVNVKAPNARQ 384

Query: 331 -NRRID 335
             RR+ 
Sbjct: 385 LARRVT 390


>gi|331648347|ref|ZP_08349435.1| YfiB [Escherichia coli M605]
 gi|330912368|gb|EGH40878.1| integral membrane protein YfiB [Escherichia coli AA86]
 gi|331042094|gb|EGI14236.1| YfiB [Escherichia coli M605]
          Length = 160

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLITQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|312116152|ref|YP_004013748.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311221281|gb|ADP72649.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 568

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 69/178 (38%), Gaps = 11/178 (6%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                 + +    +  +  L+  +         L DL  +++           +K V  +
Sbjct: 393 PEQRKVEELQGAVSAIMDKLAAIEARIEAGNASLADLKARVAEQ------GETLKTVSAQ 446

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEVISIRGHTDASPF 277
                   +   +RN   F   +    P+     + ++  ++A+S   + + G TD+   
Sbjct: 447 VFSPQQRFTEWARRNAIFFGDGTKFRNPDIASRKIAELAAIVANSDIRLLVVGFTDSL-- 504

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
              +  N +L  +RA +    L+K GV+EDR++ +S      +   +   ++ NRR++
Sbjct: 505 -GQSERNQQLGQERAKAVVDELVKLGVAEDRLATVSRRTETVITTETGATSN-NRRVE 560


>gi|319953905|ref|YP_004165172.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319422565|gb|ADV49674.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 645

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     P+  V +QK+   +       I +  HTD+      A + W LS  RA S 
Sbjct: 538 FDLNKYNIRPDAEVEIQKVIAAMEKYPSLKIKVNSHTDSR--GKDAYNLW-LSQKRAEST 594

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340
              ++  G+S DR+    GF   +L          S   +  NRR + ++ +
Sbjct: 595 VGYMVSKGISADRLEG-EGFGETKLVNGCGNNSKCSSKEHDLNRRSEFIIRE 645


>gi|304320241|ref|YP_003853884.1| OmpA family protein [Parvularcula bermudensis HTCC2503]
 gi|303299143|gb|ADM08742.1| OmpA family protein [Parvularcula bermudensis HTCC2503]
          Length = 175

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F+ +      E+I  L++    +    E  I + GH D    R     N  L   R
Sbjct: 65  NRVFFEYNEYALGQESIATLRRQAAWMKEYPEARIRLEGHADE---RGTREYNLALGARR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  G+   RI+ +S      +   S P   + NR
Sbjct: 122 ASAAKSYLVDLGIDPSRITTVSYGKERPIDPRSTPEAWARNR 163


>gi|312270731|gb|ADQ55766.1| OmpA [Haemophilus parasuis]
 gi|312270733|gb|ADQ55767.1| OmpA [Haemophilus parasuis]
          Length = 367

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 247 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 302

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 303 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 361

Query: 341 RQ 342
            +
Sbjct: 362 SK 363


>gi|312270729|gb|ADQ55765.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|312270711|gb|ADQ55756.1| OmpA [Haemophilus parasuis]
 gi|312270713|gb|ADQ55757.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|299773243|gb|ADJ38696.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|209968906|gb|ACJ02814.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968938|gb|ACJ02830.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968940|gb|ACJ02831.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968948|gb|ACJ02835.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968950|gb|ACJ02836.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968952|gb|ACJ02837.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|312270695|gb|ADQ55748.1| OmpA [Haemophilus parasuis]
 gi|312270697|gb|ADQ55749.1| OmpA [Haemophilus parasuis]
 gi|312270699|gb|ADQ55750.1| OmpA [Haemophilus parasuis]
 gi|312270701|gb|ADQ55751.1| OmpA [Haemophilus parasuis]
 gi|312270703|gb|ADQ55752.1| OmpA [Haemophilus parasuis]
 gi|312270705|gb|ADQ55753.1| OmpA [Haemophilus parasuis]
 gi|312270707|gb|ADQ55754.1| OmpA [Haemophilus parasuis]
 gi|312270709|gb|ADQ55755.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|209968898|gb|ACJ02810.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|224714303|gb|ACN62146.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714305|gb|ACN62147.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714307|gb|ACN62148.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|209968910|gb|ACJ02816.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|209968944|gb|ACJ02833.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714273|gb|ACN62131.1| outer membrane protein A [Haemophilus parasuis]
 gi|224714279|gb|ACN62134.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|254463910|ref|ZP_05077321.1| outer membrane protein, OmpA/MotB family [Rhodobacterales bacterium
           Y4I]
 gi|206684818|gb|EDZ45300.1| outer membrane protein, OmpA/MotB family [Rhodobacterales bacterium
           Y4I]
          Length = 694

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 86/265 (32%), Gaps = 18/265 (6%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRL 127
             G  L    K + +  +        +  +  D+ +      S        +   +    
Sbjct: 414 AIGTLLNNGGKVVSNSGDRAIVEQDGQYRVLKDDDVLLRQPGSNVTTYRFKDGSTRTVVT 473

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             N   +   + +E      TR    G+ +    D +K+     N         +  +  
Sbjct: 474 RENGVEVETIRSAEGRVLRRTRILPDGRSVVLFDDTQKAEKVVVNELPQVQDNRRAFSST 533

Query: 188 RKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                QDLA  +++  +  V     + +    +  R  + +  +D  N   FD  S++  
Sbjct: 534 GAVSAQDLAAALAAQEAPKVDRRFSLAQVRNIDAVRRLVPVINVDSVN---FDTGSAVIR 590

Query: 246 PETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           P+    L  +G  L    +        I GHTDA      A  N  LS  RA +    L 
Sbjct: 591 PQEAEELATLGNALRDLIDRNPAEVFLIEGHTDAV---GAATYNLALSDRRAETVALALT 647

Query: 301 KS-GVSEDRISKISGFAHHRLKIAS 324
           +   V  + +  + G+    L +++
Sbjct: 648 EYFDVPPENMV-VQGYGESDLAVST 671


>gi|83952036|ref|ZP_00960768.1| Outer membrane protein, OmpA/MotB family protein [Roseovarius
           nubinhibens ISM]
 gi|83837042|gb|EAP76339.1| Outer membrane protein, OmpA/MotB family protein [Roseovarius
           nubinhibens ISM]
          Length = 667

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKK-ISSTLSGLVADNIVKGVLFETTRT----GILISIID 230
           P    E      R  +L +L+++ + + L+    D + +    +  R       L+ +I+
Sbjct: 488 PVEVTELPRTSTRSIQLSELSEEELRAALAEKERDQLHRHYTLQQVREIRAVRDLVPVIE 547

Query: 231 QRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNW 285
                 F   S+        E   +   + E++  +   +  + GHTDA      A  N 
Sbjct: 548 LEAIN-FATDSAAITASEAEELRALGLAMSELIERNPNEVFLVEGHTDAV---GSASYNL 603

Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
            LS  RA S    L +   V  + +  + G+    LKI +      NRR
Sbjct: 604 ALSDRRAESVALALTEYFDVPPENMV-VQGYGEANLKIRTPGPERQNRR 651


>gi|87201146|ref|YP_498403.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
 gi|87136827|gb|ABD27569.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444]
          Length = 357

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L   I      ++  I + G+ D        + N  LS  R  S
Sbjct: 250 FFDWDKSDITPEAATILDNAITAYGNCASVPIMLAGYADR---SGTVKYNQGLSERRNAS 306

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   GV +  I+    F     ++ +        NRR++I
Sbjct: 307 VRSYLTTHGVPDGSITS-QAFGESNPRVPTADGVRELQNRRVEI 349


>gi|58698495|ref|ZP_00373400.1| peptidoglycan-associated lipoprotein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630914|ref|YP_002727705.1| peptidoglycan-associated lipoprotein, putative [Wolbachia sp. wRi]
 gi|58534989|gb|EAL59083.1| peptidoglycan-associated lipoprotein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592895|gb|ACN95914.1| peptidoglycan-associated lipoprotein, putative [Wolbachia sp. wRi]
          Length = 159

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
                F    S     +   L  + EVL  + +  +++ GHTD    R     N  L   
Sbjct: 41  NKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDN---RGSHEYNLALGAR 97

Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMN-------SANRRID 335
           RA +A + ++  +   E+RI   S          +  D  N       + NRR++
Sbjct: 98  RADAAKKFMVSCTPYIENRIKTAS-KGETEPLVNVKDDSRNSKYEKEHAKNRRVE 151


>gi|308050648|ref|YP_003914214.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632838|gb|ADN77140.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 166

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  S+   PE    L             + + GH D+   R     N  L   RA +  
Sbjct: 57  FDTDSARLRPEHHDQLAVFVG--DGVAGRVRVVGHADS---RGSLAHNQDLGGRRALAVS 111

Query: 297 QVL-MKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVED 340
           + L  + GV   +I + S            ++   + NRR+++ +E 
Sbjct: 112 KALSERYGVDASQIQRQS-LGETLPWRDNLTETGQTLNRRVELWIET 157


>gi|238026336|ref|YP_002910567.1| OmpA domain-containing protein [Burkholderia glumae BGR1]
 gi|237875530|gb|ACR27863.1| OmpA domain protein [Burkholderia glumae BGR1]
          Length = 170

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ   + L       I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVSDQYQPLLQAHAQYLKSHPARHILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 125 RRGLSLLGVPDSQMEAVSLGKEKPQATGHDEAAWAQNRRADIV 167


>gi|207728190|ref|YP_002256584.1| peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum MolK2]
 gi|206591435|emb|CAQ57047.1| peptidoglycan-associated lipoprotein precursor [Ralstonia
           solanacearum MolK2]
          Length = 172

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 217 FETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            + TR  +        N+P+      FD  S     E   +L +    L +H+   + I+
Sbjct: 51  VDVTRDELT-----DPNSPLAKRSVYFDFDSYTVKSEYQGLLGQHARYLQSHNQRKVLIQ 105

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328
           G+TD    R  +  N  L   RA +  + L   GV + ++  +S G    +     +   
Sbjct: 106 GNTDE---RGTSEYNLALGQKRAEAVRRALSSQGVPDSQMEAVSLGKEKPQATGHDEESW 162

Query: 329 SANRRIDIL 337
           + NRR DI+
Sbjct: 163 AQNRRSDIV 171


>gi|189423395|ref|YP_001950572.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
 gi|189419654|gb|ACD94052.1| OmpA/MotB domain protein [Geobacter lovleyi SZ]
          Length = 201

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
            +  LA ++S  ++  +     +  +   T    L  I     T  F  +SS        
Sbjct: 60  AIAKLAVRMSDPMT--IQPPATQPDVVTVTPRNELPEIKGLLGTVHFQLNSSRLSQFEQG 117

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
            L+KI   +  +   + + G+T           N +LS  RA +   VL   GV    I 
Sbjct: 118 NLEKISRDI-PAGNAVDVTGYTCTI---GTDDYNKKLSFSRAEAVATVLKAKGV---HIG 170

Query: 311 KISGFAHHRLKIASDPMNSANRRIDIL 337
            I G                NRR++I+
Sbjct: 171 TIEGKGKCCPASQD---KQQNRRVEII 194


>gi|325923404|ref|ZP_08185069.1| peptidoglycan-associated lipoprotein [Xanthomonas gardneri ATCC
           19865]
 gi|325546119|gb|EGD17308.1| peptidoglycan-associated lipoprotein [Xanthomonas gardneri ATCC
           19865]
          Length = 172

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
              L  +G S  +++ +S +   R        +  S NRR++I+
Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTETSESCWSQNRRVEIV 168


>gi|255534155|ref|YP_003094527.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255347139|gb|ACU06465.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 568

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   S   P+   +L  +  V++ +    I +  HTD+   R     N RLS  RA +A
Sbjct: 488 YDFDKSNIRPDAGRILDNLLNVMSQNPTLKIELSSHTDS---RGKDAYNLRLSQQRAEAA 544

Query: 296 YQVLMKSGVSEDRISK 311
              L+  GV+ DR+  
Sbjct: 545 VNYLVGKGVARDRMVA 560


>gi|330811342|ref|YP_004355804.1| hypothetical protein PSEBR_a4391 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379450|gb|AEA70800.1| Conserved hypothetical protein; putative exported protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 325

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   ++         LQ + + +        + + GH+D          N  LS  RA +
Sbjct: 178 FPGEAAELDAHAKAQLQVMLDFIKADPSVNHVELDGHSDN---SGNRLTNRELSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
                  +G  E +I+ +         + +   N+ANR
Sbjct: 235 VQDFFKANGFQESQIT-LRFHGERYPLVPN--TNAANR 269


>gi|330815667|ref|YP_004359372.1| OmpA domain protein [Burkholderia gladioli BSR3]
 gi|327368060|gb|AEA59416.1| OmpA domain protein [Burkholderia gladioli BSR3]
          Length = 171

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 20/165 (12%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM---- 236
             + A K   +L D A +  + L        V  V  +              N+P+    
Sbjct: 16  SALAACKSGVKLDDKANQQGNALQTQPNPTDVAQVNVDPLN---------DPNSPLAKRS 66

Query: 237 --FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
             FD  S     +   +L +  + L       I I+G+TD    R  +  N  L   RA 
Sbjct: 67  IYFDFDSYSVSDQYQSLLAQHAQYLKSHPARHILIQGNTDE---RGTSEYNLALGQKRAE 123

Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           +  + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 124 AVRRGLSLLGVPDSQMESVSLGKEKPQALGHDEASWAQNRRADIV 168


>gi|217976969|ref|YP_002361116.1| peptidoglycan-associated lipoprotein [Methylocella silvestris BL2]
 gi|217502345|gb|ACK49754.1| peptidoglycan-associated lipoprotein [Methylocella silvestris BL2]
          Length = 169

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  SS         L K    L    +   ++ GH D    R     N+ L   R
Sbjct: 60  DRVFFESDSSELSSTAQATLDKQARWLRQYAKANFTVEGHADE---RGTREYNFALGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L+  G+    I  IS +   R     + ++  S NRR
Sbjct: 117 AEAAKAYLVARGIPAAGIHTIS-YGKERPVAVCNDISCWSQNRR 159


>gi|209546431|ref|YP_002278321.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209539288|gb|ACI59221.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 642

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S          Q++ E L       + + GHTD    R     N +LS  RA + 
Sbjct: 537 FDFNKSSFTSIGTEAAQELLEALKEQKPGRVILIGHTDR---RGGDDYNQKLSERRAQAV 593

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSANRRID 335
              L  +G+         G         +       D +++ NRR++
Sbjct: 594 ADFLKSNGIDAS--IDAEGRGASEPVDVTATANLTEDDVDALNRRVE 638


>gi|65321877|ref|ZP_00394836.1| COG1360: Flagellar motor protein [Bacillus anthracis str. A2012]
          Length = 133

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F        T +K   
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72

Query: 85  DEQNPPERSSQNKIDLSIDE 104
            +Q P +    +   L  ++
Sbjct: 73  SDQKPNDEKELSASSLETEQ 92


>gi|330998926|ref|ZP_08322653.1| putative outer membrane protein A [Parasutterella excrementihominis
           YIT 11859]
 gi|329576140|gb|EGG57659.1| putative outer membrane protein A [Parasutterella excrementihominis
           YIT 11859]
          Length = 212

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + ++  PE I  L K+   ++  T +V+ I G+ D       A  N +LS  RA +
Sbjct: 92  LFAFNKAVLKPEGIAKLTKLTSRMSGLTLDVVMINGYAD--RIGGAAY-NQKLSQRRADA 148

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA--------------NRRIDILVE 339
               L + GV   RI    G       +   +P                  NRR  I V+
Sbjct: 149 VKTFLAEHGVPAARIHA-EGKGQADPVVNCPNPSAKGEIKTFKQLIECLQPNRRAVIEVK 207


>gi|254390197|ref|ZP_05005416.1| secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814756|ref|ZP_06773399.1| Putative secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443135|ref|ZP_08217869.1| secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703903|gb|EDY49715.1| secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327355|gb|EFG08998.1| Putative secreted protein [Streptomyces clavuligerus ATCC 27064]
          Length = 250

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 14/244 (5%)

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
           +     +                  L      L  +  +      L   +    D     
Sbjct: 1   MGGTTARRPAAPAARRPAALVLAAALLLTGGQLHAATAATAAGPGLRPPAAGADDPVPPP 60

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             + ++   E+  LPP+ +      +       L  +  +TL+     +IV  V  E   
Sbjct: 61  GEDPALPPVEDPALPPVGEAATPLPQIDADNPGLRMREGATLAEPRVLDIVSIVESEGGE 120

Query: 222 T---GILISI-IDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASP 276
                  +S+    +   +F + S    P     +  I E +  +  + + + G TD   
Sbjct: 121 ERREQTTVSLKFALQAEVLFGRDSHELNPRANSRIAAIAEEIRRNGAKQVRVFGFTDDLG 180

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK--ISGFAHHRLK--IASDPMNSANR 332
                R    LS  RA + + +L   G  ED      + G++        +++     NR
Sbjct: 181 SYRHGRT---LSRKRADAVHAML--DGQVEDHTVSYIVRGYSEDFPIADNSTEEGREKNR 235

Query: 333 RIDI 336
           R+++
Sbjct: 236 RVEV 239


>gi|24113943|ref|NP_708453.1| putative outer membrane lipoprotein [Shigella flexneri 2a str. 301]
 gi|30064004|ref|NP_838175.1| putative outer membrane lipoprotein [Shigella flexneri 2a str.
           2457T]
 gi|74313195|ref|YP_311614.1| putative outer membrane lipoprotein [Shigella sonnei Ss046]
 gi|82545149|ref|YP_409096.1| outer membrane lipoprotein [Shigella boydii Sb227]
 gi|218706106|ref|YP_002413625.1| putative outer membrane lipoprotein [Escherichia coli UMN026]
 gi|293406112|ref|ZP_06650038.1| outer membrane lipoprotein [Escherichia coli FVEC1412]
 gi|293411994|ref|ZP_06654717.1| outer membrane lipoprotein [Escherichia coli B354]
 gi|298381845|ref|ZP_06991442.1| outer membrane lipoprotein [Escherichia coli FVEC1302]
 gi|300900209|ref|ZP_07118397.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|331684261|ref|ZP_08384853.1| YfiB [Escherichia coli H299]
 gi|24053050|gb|AAN44160.1| putative outer membrane protein [Shigella flexneri 2a str. 301]
 gi|30042260|gb|AAP17985.1| putative outer membrane protein [Shigella flexneri 2a str. 2457T]
 gi|73856672|gb|AAZ89379.1| putative outer membrane protein [Shigella sonnei Ss046]
 gi|81246560|gb|ABB67268.1| putative outer membrane protein [Shigella boydii Sb227]
 gi|218433203|emb|CAR14101.1| putative outer membrane lipoprotein [Escherichia coli UMN026]
 gi|291426118|gb|EFE99150.1| outer membrane lipoprotein [Escherichia coli FVEC1412]
 gi|291468765|gb|EFF11256.1| outer membrane lipoprotein [Escherichia coli B354]
 gi|298276985|gb|EFI18501.1| outer membrane lipoprotein [Escherichia coli FVEC1302]
 gi|300356266|gb|EFJ72136.1| OmpA family protein [Escherichia coli MS 198-1]
 gi|313648283|gb|EFS12727.1| ompA family protein [Shigella flexneri 2a str. 2457T]
 gi|331077876|gb|EGI49082.1| YfiB [Escherichia coli H299]
 gi|333000977|gb|EGK20547.1| ompA family protein [Shigella flexneri K-272]
          Length = 160

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|307726627|ref|YP_003909840.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587152|gb|ADN60549.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003]
          Length = 367

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+      LP     L ++   L    +V  I I G+TD          N +LS  RA 
Sbjct: 237 FDRGDLGGMLPAGKAKLDQLIRDLKQVDDVTAIRIAGYTDRL---GSDSYNRQLSTKRAE 293

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-------SANRRIDI 336
           +  + L   GV+    ++  G   + +    D          +ANRR+++
Sbjct: 294 TVKRYLQNGGVTTPISARGRGK-DNPVVECHDANRQALIDCLAANRRVEL 342


>gi|291326447|ref|ZP_06124556.2| peptidoglycan-associated lipoprotein [Providencia rettgeri DSM
           1131]
 gi|291314244|gb|EFE54697.1| peptidoglycan-associated lipoprotein [Providencia rettgeri DSM
           1131]
          Length = 180

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
           Q NT  F        PE   +L      L  +    + + GH D    R     N  L  
Sbjct: 74  QNNTVYFGFDKYNVSPEYAEMLDAHAAFLRSNPSVRVVVEGHADE---RGTPEYNIALGE 130

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            RA +    L   GVS D++S +S G     +   ++   + NRR  I
Sbjct: 131 RRANAVKMYLQSKGVSGDQVSLVSYGKEKPAVLGHTEADYAKNRRAVI 178


>gi|261855180|ref|YP_003262463.1| peptidoglycan-associated lipoprotein [Halothiobacillus neapolitanus
           c2]
 gi|261835649|gb|ACX95416.1| peptidoglycan-associated lipoprotein [Halothiobacillus neapolitanus
           c2]
          Length = 127

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F        P    +LQ+    L  +T+  + + G+TD    R     N  L   RA + 
Sbjct: 25  FGFDKYNVDPSYRPMLQQNAAFLKENTQRHVLVEGNTDN---RGSREYNIALGEKRAVAV 81

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L+  GV+  ++  +S +   R  +   ++   + NRR
Sbjct: 82  RDTLLADGVAPSQVDVVS-YGEERPAVEGNNEAAWAKNRR 120


>gi|159043661|ref|YP_001532455.1| peptidoglycan-associated lipoprotein [Dinoroseobacter shibae DFL
           12]
 gi|157911421|gb|ABV92854.1| peptidoglycan-associated lipoprotein [Dinoroseobacter shibae DFL
           12]
          Length = 175

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    E   V+ +    L  +      I GH D          N  L   R
Sbjct: 65  DRVLFAVDQSTLSGEAQQVVSQQARWLMDNGAYTAVIEGHADEQ---GTQEYNLALGARR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    ++  GV+++R+S ++ F   R           + NRR
Sbjct: 122 ASAVRDFMVSQGVADNRLSTVT-FGKERPIEVCSEERCYAQNRR 164


>gi|332291441|ref|YP_004430050.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169527|gb|AEE18782.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 649

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 13/114 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S   P+  + L+K+  V+       I +R HTD+   R     N +LS  R  S 
Sbjct: 540 FDFDKSNIRPDASLELEKVIAVMQQYPALKIDVRSHTDS---RAPDAYNMKLSQRRNVST 596

Query: 296 -YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
              ++ + G+   R++   G+   +L  A       ++  +  NRR + ++  +
Sbjct: 597 IRYIVQQGGIEAYRLTG-RGYGETQLTNACANGIECTEEEHQLNRRSEFIIMAK 649


>gi|285803774|pdb|3LDT|A Chain A, Crystal Structure Of An Outer Membrane Protein(Ompa)from
           Legionella Pneumophila
          Length = 169

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS          L  +  +L       I + G TD    R+  R   +LS  +A + 
Sbjct: 58  FXFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETX 114

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDI 336
              L  +G++  R+    G+   +  I+ +     ++ NRRI+I
Sbjct: 115 XTFLWANGIAAKRLKA-EGYGD-KNAISDNAIIHGSAQNRRIEI 156


>gi|170681549|ref|YP_001744788.1| putative outer membrane lipoprotein [Escherichia coli SMS-3-5]
 gi|218701117|ref|YP_002408746.1| putative outer membrane lipoprotein [Escherichia coli IAI39]
 gi|170519267|gb|ACB17445.1| OmpA family protein [Escherichia coli SMS-3-5]
 gi|218371103|emb|CAR18931.1| putative outer membrane lipoprotein [Escherichia coli IAI39]
          Length = 160

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A          G          G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157


>gi|296284930|ref|ZP_06862928.1| peptidoglycan-associated protein [Citromicrobium bathyomarinum
           JL354]
          Length = 371

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   PE   VL        +     + + G+TD        + N  L+  R  S
Sbjct: 264 FFNWDRSDITPEAASVLNNAISAYQNCGNASVMLAGYTDR---SGTVQYNLGLAARRNAS 320

Query: 295 AYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDI 336
             Q +   G+ + RIS    G A+ R+  A       NRR++I
Sbjct: 321 VRQYMTGRGIPDARISSEAFGEANPRVPTADGVRELQNRRVEI 363


>gi|116622486|ref|YP_824642.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225648|gb|ABJ84357.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 270

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 17/213 (7%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
            KK  ++  N +    +  +    +     D++   ++ ++ +   + N++    +    
Sbjct: 34  TKKYVRQNMNTVNAKVDKLEKHTNEKIAYLDNKLNTEMSQANEQIATANQKATQAMDAAQ 93

Query: 180 KEKILAMKRKKRLQDLAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
           + +  A +  +  +  + KIS+       +A  +   + ++    G +           F
Sbjct: 94  QAQGTASRAMEETESNSAKISANAEATNTLASGMANALNYQLVEQGDVT----------F 143

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
               +   P     L  I          VI + G TD  P  +    N  LS  RA +  
Sbjct: 144 AFGKADLRPADKAALDAIVAKYNSLPRGVIELAGFTD--PIGSANF-NLALSRRRAQAVE 200

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           + L+   V   R   I G           P  +
Sbjct: 201 RYLVNQKV-PLRAINIVGLGKEMPPAPFAPDQA 232


>gi|318068285|gb|ADV36930.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|318068279|gb|ADV36927.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|318068271|gb|ADV36923.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|313206517|ref|YP_004045694.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868]
 gi|312445833|gb|ADQ82188.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868]
 gi|325336035|gb|ADZ12309.1| outer membrane protein A [Riemerella anatipestifer RA-GD]
          Length = 488

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 359 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 415

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 416 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 457


>gi|303256827|ref|ZP_07342841.1| outer membrane protein A (Outer membrane protein II)
           [Burkholderiales bacterium 1_1_47]
 gi|302860318|gb|EFL83395.1| outer membrane protein A (Outer membrane protein II)
           [Burkholderiales bacterium 1_1_47]
          Length = 221

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + ++  PE I  L ++   ++  T +V+ I G+ D       A  N +LS  RA +
Sbjct: 101 LFAFNKAVLKPEGIAKLTELTSRMSGLTLDVVMINGYAD--RIGGAAY-NQKLSQRRADA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA--------------NRRIDILVE 339
               L + GV   RI    G       +   +P                  NRR  I V+
Sbjct: 158 VKTFLAEHGVPAARIHA-EGKGQADPVVNCPNPSAKGEIKTFKQLIECLQPNRRAVIEVK 216


>gi|296280731|gb|ADH04663.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|326317265|ref|YP_004234937.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374101|gb|ADX46370.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 177

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +    +    +  +   +      + I G  DA+     A  N  L+  RA +  
Sbjct: 81  FASGRADLTADAAPAIADVVRAVKDGNRRVVISGFHDAT---GDAVANAELARQRAQAVR 137

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             L+ +G  EDRI               D   +  RR+++ ++
Sbjct: 138 DALVAAGAPEDRIEL-----RKPELAQGDGNAAEARRVEVTLD 175


>gi|167374419|gb|ABZ79139.1| outer membrane protein [Riemerella anatipestifer]
          Length = 338

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 235 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 292 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 333


>gi|167374417|gb|ABZ79138.1| outer membrane protein [Riemerella anatipestifer]
          Length = 338

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 235 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 292 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 333


>gi|154148493|ref|YP_001406772.1| putative chemotaxis protein MotB [Campylobacter hominis ATCC
           BAA-381]
 gi|153804502|gb|ABS51509.1| putative chemotaxis protein MotB [Campylobacter hominis ATCC
           BAA-381]
          Length = 337

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 125/334 (37%), Gaps = 49/334 (14%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD M  L+  F+++             I +YF     +L    +   +  +  + 
Sbjct: 12  W-IAYADLMAGLLFVFVLLVG---------GIIVKYF-LTQTDLQKTQQNFANVLSSLQD 60

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           S +   +L     I  + +D      N + +  R +N+I+++      E  K     + +
Sbjct: 61  SKKKSAELEALNKIFADKLD----KLNVENEGLRKQNSIYFIQIEDLEEMAKKLKDENFD 116

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS------TLSGL 206
             K + K+ ++    + +  + L  L++++    K    L     +I +       +   
Sbjct: 117 LNKTINKNVEIISENDTKIAFLLDKLTQKESDFNKILHDLNVTKNRIRNLTGMKVKVITD 176

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTE- 264
           + + +   V  +     + +S     ++ +FDK S     +    L + +          
Sbjct: 177 IREKLGNSVKIDN-NGALTLS-----SSVLFDKGSWAIKDDIKNELKRSLQGYFNALLNN 230

Query: 265 --------VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK---IS 313
                    I I GHTD+         N  LS +RA++     + S   +DR+ K    S
Sbjct: 231 DEIRQNLDQIIIEGHTDS---DGDYIYNLALSQNRAFAVMD-FINSWNKDDRLKKYIIAS 286

Query: 314 GFA--HHRLKIASDPMNSANRRIDI--LVEDRQG 343
           G +     L+   +  +++ RRI+I   + +++ 
Sbjct: 287 GKSFMSPVLRDGVEDKDAS-RRIEIKFTLSNKEA 319


>gi|67005885|gb|AAY62590.1| OmpA [Riemerella anatipestifer]
          Length = 390

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235071|gb|AAT70738.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235091|gb|AAT70748.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235069|gb|AAT70737.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235079|gb|AAT70742.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235085|gb|AAT70745.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235083|gb|AAT70744.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235089|gb|AAT70747.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|50235087|gb|AAT70746.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|7339728|gb|AAF60953.1|AF104936_1 outer membrane protein A precursor [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|7339731|gb|AAF60955.1|AF104937_1 outer membrane protein A precursor [Riemerella anatipestifer DSM
           15868]
 gi|50235063|gb|AAT70734.1| OmpA [Riemerella anatipestifer]
 gi|50235101|gb|AAT70753.1| OmpA [Riemerella anatipestifer]
 gi|126046403|gb|ABN73091.1| OmpA [Riemerella anatipestifer]
 gi|126046426|gb|ABN73095.1| OmpA [Riemerella anatipestifer]
 gi|225350118|gb|ACN87969.1| OmpA [Riemerella anatipestifer]
 gi|225350120|gb|ACN87970.1| OmpA [Riemerella anatipestifer]
 gi|225350122|gb|ACN87971.1| OmpA [Riemerella anatipestifer]
 gi|225350124|gb|ACN87972.1| OmpA [Riemerella anatipestifer]
 gi|225350126|gb|ACN87973.1| OmpA [Riemerella anatipestifer]
 gi|257359510|gb|ACV53155.1| OmpA [Riemerella anatipestifer]
 gi|296280735|gb|ADH04665.1| OmpA [Riemerella anatipestifer]
 gi|318068273|gb|ADV36924.1| outer membrane protein A [Riemerella anatipestifer]
 gi|318068281|gb|ADV36928.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|34499026|ref|NP_903241.1| outer membrane protein A [Chromobacterium violaceum ATCC 12472]
 gi|34104876|gb|AAQ61233.1| outer membrane protein A precursor [Chromobacterium violaceum ATCC
           12472]
          Length = 226

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 26/129 (20%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-----EVISIRGHTDASPFRNIARDNWRLS 288
             +FD + S+   +    L  +   L           + + G+TD   F    + N  LS
Sbjct: 89  KVLFDFNKSVLRADAKNELDPLVAKLKAHAGKGYLNGVEVDGYTD---FMGSDKLNNALS 145

Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI---ASDPMNSAN------------- 331
            +RA +     + +GV  ++++ I  G A  ++     A  P  + N             
Sbjct: 146 QNRADAVKAYFVNAGVPAEKVTSIGKGKAEAKMTEECKAKFPKYAKNKKQNAEIKACIES 205

Query: 332 -RRIDILVE 339
            RR+++ ++
Sbjct: 206 DRRVEVTID 214


>gi|253578401|ref|ZP_04855673.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850719|gb|EES78677.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 310

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 34/227 (14%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKILAMKRKKRLQDLA 196
           Q ++    L + SE  +   K +  ++ ++K++     L    KE+  ++  K  L    
Sbjct: 58  QEQYTAEILAQQSELDEKNSKLSSQDEQLDKQKKLLAELAAQLKEQQASLDEKTSLLATQ 117

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIV 250
           +K    + G+ AD +++ +  E ++  + + I  Q          +FD   S    E   
Sbjct: 118 QKKIDNIIGVKAD-VIEALQKEFSKNNVSVDIDAQTGALTLNANVLFDYDKSELTDEGKQ 176

Query: 251 VLQKI----GEVLAHSTEV-----ISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM 300
            L  I     +VL           I I G+TD     +   D N  LS  R+ +  Q L 
Sbjct: 177 ELADILPIYCKVLLQKDYKKYLAEIIIDGYTD----TDGDYDYNLELSQKRSLAVAQYLT 232

Query: 301 ---KSGVSEDRISK------ISGFAHHRLKIASDPM--NSANRRIDI 336
              ++ +S D IS+      ++G       + SD      A+RR+++
Sbjct: 233 EIRENFLSSDEISELQNYLTVNGHGSANPVLDSDGNVDKDASRRVEV 279


>gi|241205007|ref|YP_002976103.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858897|gb|ACS56564.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 739

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + ++       +E   I GHTDA       + N  LS  R
Sbjct: 624 FATGSADIPMTQARTLRKVADAISQVLEKDPSETFLIEGHTDAV---GSDQSNLILSDQR 680

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G++ + +    G+    LK+ +      NRR+ I
Sbjct: 681 AESVANVLSDVYGIAPENL-ATQGYGESYLKVNTSAPEQENRRVTI 725


>gi|34495565|ref|NP_899780.1| peptidoglycan-associated lipoprotein [Chromobacterium violaceum
           ATCC 12472]
 gi|34101420|gb|AAQ57789.1| peptidoglycan-associated lipoprotein [Chromobacterium violaceum
           ATCC 12472]
          Length = 172

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   SS    E    +    + L    + + I+G+TDA   R     N  L   RA S  
Sbjct: 70  FAFDSSAVDGEGKTTVANHADYLKGHDKKVIIQGNTDA---RGSREYNLALGQRRAESVK 126

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
             +   GV E ++  +S G    +    SD   + NRR DI+
Sbjct: 127 HAMEVLGVKESQLEAVSFGKEKPKATGHSDADYAENRRADIV 168


>gi|189346279|ref|YP_001942808.1| peptidoglycan-associated lipoprotein [Chlorobium limicola DSM 245]
 gi|189340426|gb|ACD89829.1| peptidoglycan-associated lipoprotein [Chlorobium limicola DSM 245]
          Length = 153

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD   S    E +  LQK  + +  +    + + GH D    R     N  L   R
Sbjct: 46  GDIFFDYDKSELRAEAVEQLQKNFDWMKQNPAGTLIVEGHCDE---RGTNEYNMALGERR 102

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A +A   ++  G    R+  +S +   R       +   + NRR
Sbjct: 103 ANAAKDYMVNVGADPARMQTVS-YGEERPFALGHDEASWAQNRR 145


>gi|144897493|emb|CAM74357.1| Outer membrane protein and related peptidoglycan-associated (lipo)
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 280

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S        +L  + +  A      + + GHTD       A+ N  LS+ R  + 
Sbjct: 178 FDLGKSAITAAAKKILVDVVKDEAALKPTSVYLAGHTDTV---GNAKANEALSIKRTETV 234

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337
            + L K GV   ++  +      +L +    +     NRR++I+
Sbjct: 235 AKELAKMGV-ATKVLDMKSHGEAKLAVPTKDNVAEGKNRRVEIM 277


>gi|261343491|ref|ZP_05971136.1| peptidoglycan-associated lipoprotein [Providencia rustigianii DSM
           4541]
 gi|282568637|gb|EFB74172.1| peptidoglycan-associated lipoprotein [Providencia rustigianii DSM
           4541]
          Length = 165

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +  T +GL A+ + +  +            + Q NT  F        PE   +L      
Sbjct: 37  VDQTNTGLSAEELARQQM----------EQLQQNNTVYFGFDKYNVSPEYAEMLDAHAAF 86

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFA 316
           L  +    + + GH D    R     N  L   RA +    L   GVS D++S +S G  
Sbjct: 87  LRSNPSVRVVVEGHADE---RGTPEYNIALGERRANAVKMYLQSKGVSGDQVSLVSYGKE 143

Query: 317 HHRLKIASDPMNSANRRIDI 336
              +   ++   + NRR  I
Sbjct: 144 KPAVLGHTEADYAKNRRAVI 163


>gi|320008837|gb|ADW03687.1| OmpA/MotB domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 216

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 25/188 (13%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KISSTLSGLVADNIVKGV 215
              S D   +     +  +   +    L +     L D+    I S +  +  +   +  
Sbjct: 38  TAASADDNPTAVPSASPPVEVDANSPGLMLGDGATLGDVRVLDIKSIVEDMGGEERREDT 97

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDA 274
             + T           +   +F K S+    E    +  I  E+       + + G TD 
Sbjct: 98  NADIT--------FALQAEVLFGKDSAKLSGEATARINAIALEIQTQKAPKVRVFGFTDN 149

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSA 330
               +   D   LS  RA +        GV   ++  ++    G+       ++D  +  
Sbjct: 150 L-GSSAHGDV--LSKQRANAV------QGVLATKLPSVTFEIRGYGEQYPIASNDTEDGR 200

Query: 331 --NRRIDI 336
             NRR+++
Sbjct: 201 KKNRRVEV 208


>gi|226330649|ref|ZP_03806167.1| hypothetical protein PROPEN_04569 [Proteus penneri ATCC 35198]
 gi|225201444|gb|EEG83798.1| hypothetical protein PROPEN_04569 [Proteus penneri ATCC 35198]
          Length = 167

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + S    E    L  +   LA+       + + G+TD          N  LS
Sbjct: 39  RSDVLFNFNKSTLKAEGQEALNGLYNELANIDPTQGRVVVIGYTDRI---GSQNYNLPLS 95

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  + IS         ++G       A   L     P     RR+
Sbjct: 96  EKRAQSVVDYLVSKGIPANSISAEGRGKENPVTGNTCDNVKARSALIDCLAPD----RRV 151

Query: 335 DILVE 339
           +I ++
Sbjct: 152 EIEIQ 156


>gi|152989276|ref|YP_001348049.1| hypothetical protein PSPA7_2689 [Pseudomonas aeruginosa PA7]
 gi|150964434|gb|ABR86459.1| hypothetical protein PSPA7_2689 [Pseudomonas aeruginosa PA7]
          Length = 465

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + S++   + ++ +Q++ + L       +   + G  D  P  +  R    LS  RA 
Sbjct: 364 FQEGSALLDNKALLDVQRLLDYLRQNQKMRKRTVLVGFGD--PKSDAERSVL-LSRLRAM 420

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           +  + L + GVS     +I GF       ++  +     NRR+++ V
Sbjct: 421 AVRRELARGGVS---FREIVGFGDELPVASNEQEAGRQKNRRVEVWV 464


>gi|108761761|ref|YP_631366.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108465641|gb|ABF90826.1| OmpA domain protein [Myxococcus xanthus DK 1622]
          Length = 449

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 81/287 (28%), Gaps = 39/287 (13%)

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           +  + D   P    +   +              +    +        ++           
Sbjct: 178 TAAMADVAIPDVPDAGAPVAAVAQAPAKPTPPPVTAPISPTPPVATPVKTVEAPEQGPVA 237

Query: 140 S--------EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                       + +      K         +     ++    + P  + ++  + +   
Sbjct: 238 PAKLLLKVLAGKRPAAATVYVKSATGAPQRVMVDRKARKPVEVMLPPGEYRLDVLSQGYL 297

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
            Q     +S      V+  + K  + ++ +  +   +++    P F +  + P   T   
Sbjct: 298 AQTRKVTLSREAVPTVSFTLAKAPVSKSQKVRLKKEVVELPRMPRFAEKQAAPRNGTTAG 357

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR-AYSAYQVLMK-------- 301
           L  + ++        + I GHTD                +R A +A + L +        
Sbjct: 358 LALLMDMFVRDEKLRLRIEGHTDNR--------------ERPAAAARKTLSEARAAAVAK 403

Query: 302 ----SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
               +G+   RI  + G    R K  +        NRR++ ++  ++
Sbjct: 404 ALVDAGLDASRIETV-GLGDTRPKAPNLLPRGRELNRRVEFVLVRKE 449


>gi|330966673|gb|EGH66933.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 301

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDANAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                   G+ E +I+ +           +
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPN 263


>gi|270293956|ref|ZP_06200158.1| major outer membrane protein OmpA [Bacteroides sp. D20]
 gi|270275423|gb|EFA21283.1| major outer membrane protein OmpA [Bacteroides sp. D20]
          Length = 374

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +LA+  +   +   A    K  + E T+       +       F   S+       V +Q
Sbjct: 240 ELAQAQADLANCKNALANAKPEVKEVTKE----VEVAGPRAIFFKIGSARLDDYGKVNIQ 295

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
              ++L  + +    + G+ D +     A  N +LS  RA   Y  L+  GVS+D++  +
Sbjct: 296 LAAKILKANPDRKYKVAGYCDKA--TGSASWNQKLSEKRAQVVYDALIAEGVSKDQLELV 353

Query: 313 SGFAHHRLKIASDPMNSANRRIDIL 337
            GF         + +N    R+ IL
Sbjct: 354 -GFGGTENMFGKNFLN----RVVIL 373


>gi|330877334|gb|EGH11483.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDANAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                   G+ E +I+ +           +
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPN 263


>gi|255530025|ref|YP_003090397.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255343009|gb|ACU02335.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366]
          Length = 585

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
               +    L+K+ +++  ++ + I +  HTD+   R     N+ LS  RA SA   ++ 
Sbjct: 483 DIRADAAAELEKLVQIMKDNSRIWIELGSHTDS---RGNDAYNFTLSQKRAESAVTYMIS 539

Query: 302 SGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338
            G+ ++RI    G+    L          ++  +  NRR +  +
Sbjct: 540 RGIEKNRIEA-RGYGETLLLNRCANGIKCTEEEHQLNRRTEFKI 582


>gi|328947792|ref|YP_004365129.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
 gi|328448116|gb|AEB13832.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489]
          Length = 1053

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 250  VVLQKIGEVLAHS-TEVISIRGH---TDASPFRNIARDNW-----RLSLDRAYSAYQVLM 300
             VL+++ E+L       ++I GH      +         W      LS  RA      L+
Sbjct: 953  RVLKRVSEILKKFKDYKVTIVGHANRISDNSAEETEEGVWGKALISLSEQRAEYVKSQLV 1012

Query: 301  KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
            K G++  R+  + G             N    NRR++ ++E
Sbjct: 1013 KFGINSSRL-SVEGKGGTEPVADRKDTNVNWKNRRVEFILE 1052


>gi|148982298|ref|ZP_01816702.1| Outer membrane protein [Vibrionales bacterium SWAT-3]
 gi|145960547|gb|EDK25905.1| Outer membrane protein [Vibrionales bacterium SWAT-3]
          Length = 205

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +S+   P  +  ++++   L       I ++G+  AS   N    N  LS +RA +
Sbjct: 86  LFANNSTEINPAFLNQIRQMAAFLKRYESTTIELQGY--ASKVGNAEH-NLMLSKERAAN 142

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
             + L+ +G+   R++ I G        ++D  
Sbjct: 143 VRRALISNGIQPSRVN-IVGHGDAE-FSSNDTE 173


>gi|58617307|ref|YP_196506.1| peptidoglycan-associated lipoprotein precursor [Ehrlichia
           ruminantium str. Gardel]
 gi|58416919|emb|CAI28032.1| Peptidoglycan-associated lipoprotein precursor [Ehrlichia
           ruminantium str. Gardel]
          Length = 216

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   ++      V+L+K+ +         I I GHTD    R     N  L   R
Sbjct: 43  DKVYFDLDKTVIKDSDKVLLEKLVQKAQEDPTTDIIIVGHTDT---RGTDEYNLALGEQR 99

Query: 292 AYSAYQVLMK-SGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340
           A +    ++      E RI+ +  G +   + + +++P  +      NRR+ I + +
Sbjct: 100 ANAVRDFIISCDKSLEKRITVRSKGKSEPAILVYSNNPKEAEDAHAKNRRVVITLVN 156


>gi|226944962|ref|YP_002800035.1| periplasmic phosphate binding protein [Azotobacter vinelandii DJ]
 gi|226719889|gb|ACO79060.1| periplasmic phosphate binding protein [Azotobacter vinelandii DJ]
          Length = 428

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 13/273 (4%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P       A  G FD  +        K  L  D    ++S +L    +        +   
Sbjct: 163 PIRLYARDARSGTFDTFHELVLEPWGK-TLDADARRFESSAELSASVSRDPAGIGFIGLP 221

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
               + +        S     E      +   L + +   E    P      ++   +  
Sbjct: 222 YVREARALAIS-AGESRPMPPEPALVATEDYPLSRRLFLYERPRQPDTWSRALIEFAQSP 280

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R Q+L ++       + A  I            +            F + S++   + + 
Sbjct: 281 RGQELVERNGFVAQKVQAVRIAPHADMPPAYQQLARHARRLSVNFRFQEGSALLDNKALR 340

Query: 251 VLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            ++++   L         +++ G  D  P ++  R    LS  RA +  + L + G +  
Sbjct: 341 DVERVLAYLREHGKLENSLALVGFGD--PKQDPERSTL-LSKLRALAVRRELARGGAT-- 395

Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
              +I G         +  +     NRR+++ V
Sbjct: 396 -FREIIGLGDALPVADNGSEEGRLKNRRVEVWV 427


>gi|145579534|pdb|2HQS|H Chain H, Crystal Structure Of TolbPAL COMPLEX
 gi|145579536|pdb|2HQS|C Chain C, Crystal Structure Of TolbPAL COMPLEX
 gi|145579538|pdb|2HQS|E Chain E, Crystal Structure Of TolbPAL COMPLEX
 gi|145579540|pdb|2HQS|G Chain G, Crystal Structure Of TolbPAL COMPLEX
 gi|223673846|pdb|2W8B|C Chain C, Crystal Structure Of Processed Tolb In Complex With  Pal
 gi|223673847|pdb|2W8B|E Chain E, Crystal Structure Of Processed Tolb In Complex With  Pal
 gi|223673848|pdb|2W8B|G Chain G, Crystal Structure Of Processed Tolb In Complex With  Pal
 gi|223673849|pdb|2W8B|H Chain H, Crystal Structure Of Processed Tolb In Complex With  Pal
          Length = 118

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           ++ Q N   FD        +   +L      L  +    +++ GH D    R     N  
Sbjct: 1   MLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNIS 57

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   GVS D+IS +S +   +  +    +   S NRR
Sbjct: 58  LGERRANAVKMYLQGKGVSADQISIVS-YGKEKPAVLGHDEAAYSKNRR 105


>gi|237807905|ref|YP_002892345.1| OmpA domain-containing protein transmembrane region-containing
           protein [Tolumonas auensis DSM 9187]
 gi|237500166|gb|ACQ92759.1| OmpA domain protein transmembrane region-containing protein
           [Tolumonas auensis DSM 9187]
          Length = 341

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + S   P  +  L ++    + L    + I + G+TD     +    N +LS DRA
Sbjct: 220 LFDFNKSTLKPAGVTALSQLYNQIQTLEMDDKNIVVYGYTD--RIGSDGY-NLKLSQDRA 276

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILVEDRQ 342
            +    L   G+S  RI+ +  G A      + + + +          +RR++I V+  +
Sbjct: 277 KTVSDFLTTKGLSATRITAVGRGEADPVSPASCNAIKAKKDLIVCLAPDRRVNIEVKGTK 336


>gi|157087553|gb|ABV21642.1| outer membrane protein [Riemerella anatipestifer]
          Length = 387

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +R
Sbjct: 255 NGIFFNFNKASIRTESNPKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRER 311

Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANR 332
           A S    L   GV+  ++ SK  G A       AS+     +R
Sbjct: 312 AASVVVALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDR 354


>gi|330503247|ref|YP_004380116.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328917533|gb|AEB58364.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 460

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTD--ASPFRNIARDNWRLSLDR 291
           F + S+    +    LQ++ + L         + + G  D    P R        LS  R
Sbjct: 359 FQEGSATLDNKAHRDLQRVLDYLRQHDKLQNKVVLVGFGDPKNDPERAEL-----LSKLR 413

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
           A +  + L K GV      +I+G        A+D  N    NRR+++ V
Sbjct: 414 AMAVRRELAKQGVL---FREITGLGSELPVAANDQDNGRIRNRRVEVWV 459


>gi|254411859|ref|ZP_05025635.1| Putative phospholipid-binding domain family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181581|gb|EDX76569.1| Putative phospholipid-binding domain family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 905

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I    +  + + + +    ++    + +  +   +   FD +S+         +  +   
Sbjct: 766 IQVKDAQKITEALEEIPGVDSVTNTVQLQPLALASRIYFDLNSADLKASEQAKMDALTAF 825

Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           LA      + + GH+D         +N  L+L+RA +  +VL++ G+   R+  +SG
Sbjct: 826 LADYPNQSLRVIGHSDP---SGTPLENQELALERAKAVAEVLVRQGIDARRLE-VSG 878


>gi|194333585|ref|YP_002015445.1| peptidoglycan-associated lipoprotein [Prosthecochloris aestuarii
           DSM 271]
 gi|194311403|gb|ACF45798.1| peptidoglycan-associated lipoprotein [Prosthecochloris aestuarii
           DSM 271]
          Length = 153

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
           Q +   +   SS+    +   L++  + +  + E  + + GH D    R     N  L  
Sbjct: 46  QLDDVFYAFDSSVLDMASQNQLKENAQWMMDNPEAAVIVEGHCDE---RGTNEYNIALGE 102

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339
            RA SA   L+  GV   R+  +S +   R       +   + NRR   +V+
Sbjct: 103 RRADSAKSYLVNLGVDASRMQTVS-YGEERPFDPGHDEAAWAKNRRAHFVVQ 153


>gi|125491378|gb|ABN43176.1| putative outer membrane protein A [Bordetella petrii]
          Length = 137

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +  +       I  GHTD+      A  N +LS  RA S
Sbjct: 62  FFDFDKSTLKPEGRQLLDQVAQQASGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 118

Query: 295 AYQVLMKSGVSE 306
               L+  GV  
Sbjct: 119 VKSYLVSKGVDP 130


>gi|157804141|ref|YP_001492690.1| guanylate kinase [Rickettsia canadensis str. McKiel]
 gi|157785404|gb|ABV73905.1| guanylate kinase [Rickettsia canadensis str. McKiel]
          Length = 155

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 220 TRTGILISIIDQR-----NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTD 273
              G  IS++        N   FD  SS   P+    L++    +L H     ++ GH D
Sbjct: 31  VNQGEEISLMKDFEKHAGNAVWFDFDSSDLSPKAKEELERQACWLLKHPEVKATVEGHCD 90

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
               R     N  L   RA +A + L   G+  +R++ IS +   R  +  +     + N
Sbjct: 91  E---RGTREYNLGLGERRAAAAKKFLAHKGIDNNRLNIIS-YGKDRPAMMGNTEEAFAYN 146

Query: 332 RR-IDIL 337
           RR + ++
Sbjct: 147 RRAVTVI 153


>gi|28871298|ref|NP_793917.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970867|ref|ZP_03398990.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. tomato
           T1]
 gi|301384498|ref|ZP_07232916.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. tomato Max13]
 gi|302059911|ref|ZP_07251452.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. tomato K40]
 gi|302130510|ref|ZP_07256500.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28854548|gb|AAO57612.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213924390|gb|EEB57962.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. tomato
           T1]
 gi|331015672|gb|EGH95728.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 301

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDANAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                   G+ E +I+ +           +
Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPN 263


>gi|83719210|ref|YP_441918.1| OmpA family outer membrane protein [Burkholderia thailandensis
           E264]
 gi|167580762|ref|ZP_02373636.1| outer membrane protein, OmpA family [Burkholderia thailandensis
           TXDOH]
 gi|167618865|ref|ZP_02387496.1| outer membrane protein, OmpA family [Burkholderia thailandensis
           Bt4]
 gi|257138089|ref|ZP_05586351.1| OmpA family outer membrane protein [Burkholderia thailandensis
           E264]
 gi|83653035|gb|ABC37098.1| outer membrane protein, OmpA family [Burkholderia thailandensis
           E264]
          Length = 170

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVQDQYQPLLQQHAQYLKSHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G          +   + NRR D++
Sbjct: 125 RRALSLLGVGDSQMEAVSLGKEKPVALGHDEASWAQNRRADLV 167


>gi|291278017|gb|ADD91483.1| outer mebrane protein A [Riemerella columbina]
          Length = 326

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  +++   +     + GHTDA   +  A  N +LS +RA S
Sbjct: 244 FFNFNKASIRPESDGKLDQAADIIKSSNGGTFLVTGHTDA---KGNANYNLKLSKERAAS 300

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH 317
               L   GV+  ++ S+  G A 
Sbjct: 301 VVNALEARGVNASQLKSRGVGSAE 324


>gi|315498692|ref|YP_004087496.1| peptidoglycan-associated lipoprotein [Asticcacaulis excentricus CB
           48]
 gi|315416704|gb|ADU13345.1| peptidoglycan-associated lipoprotein [Asticcacaulis excentricus CB
           48]
          Length = 184

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+   S    +   +L K    L       + I G+ D    R     N+ L   R
Sbjct: 75  DRVFFELDQSSLREDAKALLDKQAAWLVRYPAVKVRIEGNADE---RGTREYNFALGARR 131

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A S  Q L   GV   RIS IS    + +   +D    S NR
Sbjct: 132 AESVSQYLTSKGVVPSRISTISYGKENPIATGTDEEAWSQNR 173


>gi|229515215|ref|ZP_04404675.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae TMA 21]
 gi|229347920|gb|EEO12879.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae TMA 21]
          Length = 172

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 53  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADE-- 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 111 -RGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVS-YGEEKPLVLGQSEEAYAKNRR 167


>gi|229903102|ref|ZP_04518216.1| Outer membrane protein A precursor [Yersinia pestis Nepal516]
 gi|229679844|gb|EEO75946.1| Outer membrane protein A precursor [Yersinia pestis Nepal516]
          Length = 205

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279
           I+D +     +  +F  + +   PE    L ++   L+        + + G  D      
Sbjct: 68  IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 124

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330
               N  LS  RA S    L+  G+  D+I+   G         +      P  +     
Sbjct: 125 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 183

Query: 331 --NRRIDILVE 339
             +RR++I V+
Sbjct: 184 APDRRVEIEVK 194


>gi|254455867|ref|ZP_05069296.1| OmpA family protein [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082869|gb|EDZ60295.1| OmpA family protein [Candidatus Pelagibacter sp. HTCC7211]
          Length = 165

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
            +   F  + SI    +   L+     L  ++   I + GH D    R     N  L   
Sbjct: 58  PDRVFFATNESILTTASRETLRAQAAWLRKNSSINIVLEGHADE---RGTREYNLALGER 114

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
           RA SA   LM  G+S DRIS +S      +   S P+  S NRR
Sbjct: 115 RANSAKDYLMTYGISSDRISVLSYGKERPVDGGSSPLAWSKNRR 158


>gi|57239289|ref|YP_180425.1| peptidoglycan-associated lipoprotein precursor [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579253|ref|YP_197465.1| peptidoglycan-associated lipoprotein precursor [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161368|emb|CAH58291.1| hypothetical protein Erum5620 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417879|emb|CAI27083.1| Peptidoglycan-associated lipoprotein precursor [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 217

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   ++      V+L+K+ +         I I GHTD    R     N  L   R
Sbjct: 43  DKVYFDLDKTVIKDSDKVLLEKLVQKAQEDPTTDIIIVGHTDT---RGTDEYNLALGEQR 99

Query: 292 AYSAYQVLMK-SGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340
           A +    ++      E RI+ +  G +   + + +++P  +      NRR+ I + +
Sbjct: 100 ANAVRDFIISCDKSLEKRITVRSKGKSEPAILVYSNNPKEAEDAHAKNRRVVITLVN 156


>gi|260869286|ref|YP_003235688.1| putative outer membrane lipoprotein [Escherichia coli O111:H- str.
           11128]
 gi|257765642|dbj|BAI37137.1| predicted outer membrane lipoprotein [Escherichia coli O111:H- str.
           11128]
          Length = 160

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHAHMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|300776671|ref|ZP_07086529.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
 gi|300502181|gb|EFK33321.1| OmpA family protein [Chryseobacterium gleum ATCC 35910]
          Length = 886

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 22/164 (13%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-------RNTPMFDKSSSI 243
           RL+    ++         D        +    G  + +I         + T  +   S++
Sbjct: 270 RLEPCKFEVIKITENETKDGKASNTTVKVFDNGNGVKLIKSAALQEHIQRTIYYKFDSTV 329

Query: 244 PLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   VL  + + +L H    +++ G+            N  LS  RA    +     
Sbjct: 330 IDKDGEAVLNNVLKFLLEHKDSTMNLSGYAC---VIGKENYNKGLSQKRADVVKKFFADG 386

Query: 303 GVSEDRISKISGFAHHRL----------KIASDPMNSANRRIDI 336
           G+   RI  + G                K  ++     NRR+DI
Sbjct: 387 GLDPRRIISV-GKGEVDPTDDKMGRDNIKYKNEKDYENNRRVDI 429


>gi|34581206|ref|ZP_00142686.1| peptidoglycan-associated lipoprotein precursor [Rickettsia sibirica
           246]
 gi|28262591|gb|EAA26095.1| peptidoglycan-associated lipoprotein precursor [Rickettsia sibirica
           246]
          Length = 155

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      ++I GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSALSPKAKEELERQACWLSKHPEVKVTIEGHCDE---RGTKEYNLGLGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+  +R++ IS +   R  +  +     + NRR
Sbjct: 110 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 148


>gi|157826223|ref|YP_001493943.1| peptidoglycan-associated lipoprotein precursor [Rickettsia akari
           str. Hartford]
 gi|157800181|gb|ABV75435.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia akari
           str. Hartford]
          Length = 155

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+       ++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSSLSPKAKEELERQACWLSKHPEVKATVEGHCDE---RGTREYNLGLGERRAEAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
            + L+  G+   R++ IS        I +     + NRR
Sbjct: 110 KKFLVHKGIDHSRLNTISYGKDRPAMIGNTEEAFAYNRR 148


>gi|300023926|ref|YP_003756537.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525747|gb|ADJ24216.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 9/206 (4%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
           +Q+ +   N  T        +  ++D      +     L     +   A + ++ L  L 
Sbjct: 30  AQEDDDGPNGETAAELLVDGMDAASDRAYDSARRLFQKLISAFPDSPEAARARRALSSLG 89

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
                T  G  A    +       R   LIS+ D      F +SS+      + +++   
Sbjct: 90  SD-GDTEEGRAAIRADEAERTAEYRHAFLISVGD---RVFFAESSAELGGRALAIIEGQA 145

Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISG 314
             L       I++ G +D        R    LS  RA +    L+ +G+   R+  + +G
Sbjct: 146 RWLKLRPNLTITVIGRSDD---GGDRRSAQTLSKQRAEAVRDRLIAAGLDASRVDLRPTG 202

Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340
                   ++    + NR  ++ + D
Sbjct: 203 NDDKVAVCSTSMCRAQNRNAEVFIND 228


>gi|46015011|pdb|1OAP|A Chain A, Mad Structure Of The Periplasmique Domain Of The
           Escherichia Coli Pal Protein
          Length = 109

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
           Q N   FD        +   +L      L  +    +++ GH D    R     N  L  
Sbjct: 3   QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGE 59

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            RA +    L   GVS D+IS +S +   +  +    +   S NRR
Sbjct: 60  RRANAVKMYLQGKGVSADQISIVS-YGKEKPAVLGHDEAAYSKNRR 104


>gi|68637975|emb|CAI72626.1| putative outer membrane protein A [Bordetella petrii]
          Length = 138

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +  +       I  GHTD+      A  N +LS  RA S
Sbjct: 62  FFDFDKSTLKPEGRQLLDQVAQQASGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 118

Query: 295 AYQVLMKSGVSE 306
               L+  GV  
Sbjct: 119 VKSYLVSKGVDP 130


>gi|194333586|ref|YP_002015446.1| peptidoglycan-associated lipoprotein [Prosthecochloris aestuarii
           DSM 271]
 gi|194311404|gb|ACF45799.1| peptidoglycan-associated lipoprotein [Prosthecochloris aestuarii
           DSM 271]
          Length = 169

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRN 279
              +            F   S+         L++  E ++AH +  + I GH D    R 
Sbjct: 52  EEALRDEARLALKDVFFSFESADLDILATTQLKRNAEWMIAHPSVSVIIEGHCDE---RG 108

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337
               N  L   RA  +   L+K+GV+  RI  +S +   R   A   D   + NRR   +
Sbjct: 109 TGEFNMALGERRADISKSFLVKAGVASSRIQTVS-YGEERPFEAGHDDSAWAKNRRAHFV 167

Query: 338 VE 339
           VE
Sbjct: 168 VE 169


>gi|167950041|ref|ZP_02537115.1| flagellar motor protein MotB [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 76

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
          L +W   +AD M++LM FF+++      D    K + +   
Sbjct: 6  LPAWLATFADLMSLLMCFFVLLLSFATIDAVRFKKMAESMK 46


>gi|323492645|ref|ZP_08097789.1| OmpA/MotB domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323313020|gb|EGA66140.1| OmpA/MotB domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 323

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE--TIVVLQKIGEVLAHSTE- 264
           AD ++     E         +    N   FD  S     E       Q+I  +L    E 
Sbjct: 182 ADEVINQYELEPVVAKTSTVLQKPTNAIYFDTDSYAIDGEWVVEKKAQRIICLLRKYPES 241

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + GHTDA      A  N  LS  RA +    LM   +++++I  + G    +   ++
Sbjct: 242 KVDLIGHTDAE---GTADYNQNLSEHRAQAVANWLMTKDIAQEQI-SLQGVGDTQPASSN 297

Query: 325 --DPMNSANRRID 335
                 + NRR++
Sbjct: 298 LTPESRALNRRVE 310


>gi|83312308|ref|YP_422572.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82947149|dbj|BAE52013.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 162

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD +SS    + +  L +    L       +++ GH D    R     N  L   R
Sbjct: 57  DRVFFDTNSSALRSDALATLTRQAVWLRAYPNYQLTVEGHADE---RGTREYNLGLGDRR 113

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A++  + L+  GV++ R+  IS G        ++D   + +RR
Sbjct: 114 AHAVKRFLIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRR 156


>gi|271962882|ref|YP_003337078.1| Outer membrane protein and related peptidoglycan- associated
           (lipo)protein-like protein [Streptosporangium roseum DSM
           43021]
 gi|270506057|gb|ACZ84335.1| Outer membrane protein and related peptidoglycan- associated
           (lipo)protein-like protein [Streptosporangium roseum DSM
           43021]
          Length = 535

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 218 ETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274
           ETT  G  + +++       +F  + +   P +  VL +  +++  S    I++ GH D+
Sbjct: 250 ETTDDGEDLHVNLSSD---VLFALNRADLTPRSRAVLTRTAKLIDTSEGATITVEGHADS 306

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           S    I      LS  RA +  + L           +  G+   R    ++
Sbjct: 307 SGTDAINDP---LSQRRAQAVQRALSGLLTRTGVRFQAKGYGSRRPLYGNE 354


>gi|299773229|gb|ADJ38689.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PM---NSANRRIDILVED 340
           A +    ++  GV+   ++ + G+        +         P+    + +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKPLIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|212712432|ref|ZP_03320560.1| hypothetical protein PROVALCAL_03526 [Providencia alcalifaciens DSM
           30120]
 gi|212684889|gb|EEB44417.1| hypothetical protein PROVALCAL_03526 [Providencia alcalifaciens DSM
           30120]
          Length = 165

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++ T +GL A+ + +  +            + Q NT  F        PE   +L      
Sbjct: 37  MNQTNTGLSAEELARQQM----------EQLQQNNTVYFGFDKYNVSPEYAEMLDAHAAF 86

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFA 316
           L  +    + + GH D    R     N  L   RA +    L   GVS D++S +S G  
Sbjct: 87  LRSNPSVRVVVEGHADE---RGTPEYNIALGERRANAVKMYLQSKGVSGDQVSLVSYGKE 143

Query: 317 HHRLKIASDPMNSANRRIDI 336
              +   ++   + NRR  I
Sbjct: 144 KPAVLGHTEADYAKNRRAVI 163


>gi|213864669|ref|ZP_03386788.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
          Length = 37

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVL 44
          KNQ +   I++K++ A      + GSWKI YADFMT +
Sbjct: 2  KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAM 37


>gi|50235067|gb|AAT70736.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFTFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|15641837|ref|NP_231469.1| peptidoglycan-associated lipoprotein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121585809|ref|ZP_01675603.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 2740-80]
 gi|121727622|ref|ZP_01680725.1| peptidoglycan-associated lipoprotein [Vibrio cholerae V52]
 gi|147673661|ref|YP_001217371.1| peptidoglycan-associated lipoprotein [Vibrio cholerae O395]
 gi|153214301|ref|ZP_01949318.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 1587]
 gi|153800452|ref|ZP_01955038.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MZO-3]
 gi|153819810|ref|ZP_01972477.1| peptidoglycan-associated lipoprotein [Vibrio cholerae NCTC 8457]
 gi|153824298|ref|ZP_01976965.1| peptidoglycan-associated lipoprotein [Vibrio cholerae B33]
 gi|153826235|ref|ZP_01978902.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MZO-2]
 gi|153828567|ref|ZP_01981234.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 623-39]
 gi|227081964|ref|YP_002810515.1| peptidoglycan-associated lipoprotein [Vibrio cholerae M66-2]
 gi|229508068|ref|ZP_04397573.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae BX 330286]
 gi|229511693|ref|ZP_04401172.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae B33]
 gi|229518832|ref|ZP_04408275.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae RC9]
 gi|229520296|ref|ZP_04409722.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae TM 11079-80]
 gi|229529142|ref|ZP_04418532.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae 12129(1)]
 gi|229607629|ref|YP_002878277.1| OmpA precursor [Vibrio cholerae MJ-1236]
 gi|254285225|ref|ZP_04960190.1| peptidoglycan-associated lipoprotein [Vibrio cholerae AM-19226]
 gi|254848921|ref|ZP_05238271.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MO10]
 gi|255745403|ref|ZP_05419352.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio cholera
           CIRS 101]
 gi|262169824|ref|ZP_06037515.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae RC27]
 gi|297579354|ref|ZP_06941282.1| peptidoglycan-associated lipoprotein [Vibrio cholerae RC385]
 gi|298498126|ref|ZP_07007933.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MAK 757]
 gi|9656362|gb|AAF94983.1| peptidoglycan-associated lipoprotein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549947|gb|EAX59965.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 2740-80]
 gi|121630009|gb|EAX62416.1| peptidoglycan-associated lipoprotein [Vibrio cholerae V52]
 gi|124115449|gb|EAY34269.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 1587]
 gi|124124078|gb|EAY42821.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MZO-3]
 gi|126509649|gb|EAZ72243.1| peptidoglycan-associated lipoprotein [Vibrio cholerae NCTC 8457]
 gi|126518179|gb|EAZ75404.1| peptidoglycan-associated lipoprotein [Vibrio cholerae B33]
 gi|146315544|gb|ABQ20083.1| peptidoglycan-associated lipoprotein [Vibrio cholerae O395]
 gi|148875962|gb|EDL74097.1| peptidoglycan-associated lipoprotein [Vibrio cholerae 623-39]
 gi|149740000|gb|EDM54175.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MZO-2]
 gi|150424497|gb|EDN16433.1| peptidoglycan-associated lipoprotein [Vibrio cholerae AM-19226]
 gi|227009852|gb|ACP06064.1| peptidoglycan-associated lipoprotein [Vibrio cholerae M66-2]
 gi|227013734|gb|ACP09944.1| peptidoglycan-associated lipoprotein [Vibrio cholerae O395]
 gi|229332916|gb|EEN98402.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae 12129(1)]
 gi|229342662|gb|EEO07654.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae TM 11079-80]
 gi|229343521|gb|EEO08496.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae RC9]
 gi|229351658|gb|EEO16599.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae B33]
 gi|229355573|gb|EEO20494.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae BX 330286]
 gi|229370284|gb|ACQ60707.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae MJ-1236]
 gi|254844626|gb|EET23040.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MO10]
 gi|255737233|gb|EET92629.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio cholera
           CIRS 101]
 gi|262022058|gb|EEY40768.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae RC27]
 gi|297536948|gb|EFH75781.1| peptidoglycan-associated lipoprotein [Vibrio cholerae RC385]
 gi|297542459|gb|EFH78509.1| peptidoglycan-associated lipoprotein [Vibrio cholerae MAK 757]
 gi|327484390|gb|AEA78797.1| 18K peptidoglycan-associated outer membrane lipoprotein;
           Peptidoglycan-associated lipoprotein precursor; Outer
           membrane protein P6; OmpA/MotB precursor [Vibrio
           cholerae LMA3894-4]
          Length = 172

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 53  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADE-- 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 111 -RGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVS-YGEEKPLVLGQSEEAYAKNRR 167


>gi|329960555|ref|ZP_08298922.1| OmpA family protein [Bacteroides fluxus YIT 12057]
 gi|328532619|gb|EGF59409.1| OmpA family protein [Bacteroides fluxus YIT 12057]
          Length = 409

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWR 286
           + D  N   F+   +    ++  V+ +I  + LA +T+   I G TDA   +   + N  
Sbjct: 288 LCDLFNNIYFEFDKAEITEKSDAVIDQIARIMLADTTKRYLITGCTDA---KGSPQYNMG 344

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFA---HHRLKIASDPMNSANRRI--DIL 337
           LS  RA +    L++ GV E+ + K  G      +  + AS+ +   +R+I  +I+
Sbjct: 345 LSRRRADAVVNALLQKGVPEE-MLKSRGVGKKISYASQDASNEIREGDRKIIVEII 399


>gi|318068283|gb|ADV36929.1| outer membrane protein A [Riemerella anatipestifer]
          Length = 387

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  +V+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRSESNTKLDQAADVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|281602014|gb|ADA74998.1| putative outer membrane protein [Shigella flexneri 2002017]
          Length = 160

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A          G          G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157


>gi|45758057|gb|AAO85787.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 372

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 252 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLSIQVNGYTDRI---GKEASNLKLSQRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 309 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 367

Query: 342 Q 342
           +
Sbjct: 368 K 368


>gi|15893123|ref|NP_360837.1| peptidoglycan-associated lipoprotein precursor [Rickettsia conorii
           str. Malish 7]
 gi|15620330|gb|AAL03738.1| peptidoglycan-associated lipoprotein precursor [Rickettsia conorii
           str. Malish 7]
          Length = 155

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSALSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGTKEYNLGLGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+  +R++ IS +   R  +  +     + NRR
Sbjct: 110 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 148


>gi|83858639|ref|ZP_00952161.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853462|gb|EAP91314.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 355

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           D      F    S    +   V+ Q + +        +SI GH D       A  N  LS
Sbjct: 245 DAGFVVYFAWDRSEISSQAAAVINQAVSQARNCGVASVSIDGHADR---SGAASYNVGLS 301

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339
             RA +    +++ GV    I  +  F   R  +          NRR +++++
Sbjct: 302 ERRARAVRDEMVRLGVPASAI-SLEAFGESRPAVETPDGVREPLNRRAEVMID 353


>gi|270293963|ref|ZP_06200165.1| major outer membrane protein OmpA [Bacteroides sp. D20]
 gi|270275430|gb|EFA21290.1| major outer membrane protein OmpA [Bacteroides sp. D20]
          Length = 355

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +LA+  +   +   A    K  + E T+       +       F   S+       V ++
Sbjct: 221 ELAQAQADLANCKNALANAKPEVKEVTKE----VEVAGPRAIFFKIGSARLDDYGKVNIE 276

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR--LSLDRAYSAYQVLMKSGVSEDRIS 310
              ++L  + +    + G+ D    +     +W   LS  RA   Y  L+  GV +D++ 
Sbjct: 277 LAAKILKANPDKKYKVAGYAD----KATGSTSWNQKLSEKRAQVVYDALIAQGVDKDQLE 332

Query: 311 KISGFAHHRLKIASDPMNSANRRIDIL 337
            + GF         + +N    R+ IL
Sbjct: 333 LV-GFGGTANMFGKNFLN----RVVIL 354


>gi|209549648|ref|YP_002281565.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535404|gb|ACI55339.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 742

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + ++       +E   I GHTDA       + N  LS  R
Sbjct: 627 FATGSADIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GTDQSNLVLSDQR 683

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ +
Sbjct: 684 AESVANVLSDVYGIPPENL-ATQGYGEQYLKVNTSGPEQENRRVTV 728


>gi|238022549|ref|ZP_04602975.1| hypothetical protein GCWU000324_02457 [Kingella oralis ATCC 51147]
 gi|237867163|gb|EEP68205.1| hypothetical protein GCWU000324_02457 [Kingella oralis ATCC 51147]
          Length = 471

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRL 287
           D   T  F    S        V   + +++A       + + G+TD++     A  N  L
Sbjct: 370 DAVATFYFATGKSDVAAHADKV---VADLIAAGKNGKKLVVSGYTDST---GNAAANAEL 423

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N----RRIDI 336
           S  RA +    L K GV+   I          L+   +   +A N    RR+++
Sbjct: 424 SKKRAQAVKAFLEKQGVNAKNI---------ELRKPENTTAAAGNNAQGRRVEV 468


>gi|261496238|ref|ZP_05992643.1| heat-modifiable outer membrane protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308069|gb|EEY09367.1| heat-modifiable outer membrane protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 372

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 252 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 309 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 367

Query: 342 Q 342
           +
Sbjct: 368 K 368


>gi|192288642|ref|YP_001989247.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282391|gb|ACE98771.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 306

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    LQ I + L  + +        I GHTDA        DN  LS  R
Sbjct: 180 FDLGSWDIPPDQAAKLQAIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 236

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +A  +L +  GV  + ++   G+    LKI +      NRR+ I
Sbjct: 237 AEAAAALLTQQFGVPAENLTS-QGYGEQYLKIQTQAPERQNRRVTI 281


>gi|45758059|gb|AAO85788.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 372

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 252 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 309 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 367

Query: 342 Q 342
           +
Sbjct: 368 K 368


>gi|45758055|gb|AAO85786.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 372

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 252 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 309 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 367

Query: 342 Q 342
           +
Sbjct: 368 K 368


>gi|45758063|gb|AAO85790.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 367

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 247 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|261491959|ref|ZP_05988536.1| heat-modifiable outer membrane protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|45758053|gb|AAO85785.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
 gi|261312426|gb|EEY13552.1| heat-modifiable outer membrane protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 374

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 254 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 310

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 311 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 369

Query: 342 Q 342
           +
Sbjct: 370 K 370


>gi|45758065|gb|AAO85791.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 367

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 247 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|45758061|gb|AAO85789.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 373

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 253 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 309

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 310 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 368

Query: 342 Q 342
           +
Sbjct: 369 K 369


>gi|45758051|gb|AAO85784.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 378

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 258 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 314

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 315 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 373

Query: 342 Q 342
           +
Sbjct: 374 K 374


>gi|5833214|gb|AAD53408.1|AF133259_1 outer membrane protein PomA [Mannheimia haemolytica]
 gi|45758045|gb|AAO85781.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
 gi|45758049|gb|AAO85783.1| heat-modifiable outer membrane protein [Mannheimia haemolytica]
          Length = 378

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 258 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 314

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 315 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 373

Query: 342 Q 342
           +
Sbjct: 374 K 374


>gi|312270719|gb|ADQ55760.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|312270715|gb|ADQ55758.1| OmpA [Haemophilus parasuis]
          Length = 365

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|301166059|emb|CBW25633.1| peptidoglycan-associated lipoprotein precursor [Bacteriovorax
           marinus SJ]
          Length = 169

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
            T  F  +SS+        L    E L  +    I + GH D    R   + N  L   R
Sbjct: 62  KTVFFGFNSSVLSTSARETLNANAEFLKANPSVEIQVEGHCDE---RGGVQYNLALGERR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           A +    L+  GV+  RIS IS      +    D    ++NRR + ++  +
Sbjct: 119 AVAVKDHLVAMGVNSSRISTISFGKERPVAFGHDESAWASNRRGNFIITAK 169


>gi|299773235|gb|ADJ38692.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|282891235|ref|ZP_06299738.1| hypothetical protein pah_c048o071 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498928|gb|EFB41244.1| hypothetical protein pah_c048o071 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 238

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+K+   L     V + I GH D    R     N  L   R+ +  ++L+K GV+ + + 
Sbjct: 150 LRKVANYLKKHDRVYVFIEGHCDE---RGAEAYNLALGSRRSNAVREILIKEGVNPENLF 206

Query: 311 KISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
            IS      L +  +  +   NRR +  +  R
Sbjct: 207 TISYGKERPLFLDHNEESWGQNRRAEFKIYQR 238


>gi|209968920|gb|ACJ02821.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 365

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|209968912|gb|ACJ02817.1| outer membrane protein P5 [Haemophilus parasuis]
 gi|224714271|gb|ACN62130.1| outer membrane protein A [Haemophilus parasuis]
          Length = 365

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P +   L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPASAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    ++  GV+   ++ + G+        +  D +            +RR++I V+ 
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQG 359

Query: 341 RQ 342
            +
Sbjct: 360 SK 361


>gi|188025753|ref|ZP_02959682.2| hypothetical protein PROSTU_01567 [Providencia stuartii ATCC 25827]
 gi|188020355|gb|EDU58395.1| hypothetical protein PROSTU_01567 [Providencia stuartii ATCC 25827]
          Length = 175

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           ++ T SGL A+ + +  + E          +   N   F        PE   +L      
Sbjct: 47  MNQTNSGLSAEELARQQMQE----------LQNNNIVYFGFDKYNVSPEYADMLDAHAAF 96

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFA 316
           L ++    + + GH D    R     N  L   RA +    L   GV+ D++S +S G  
Sbjct: 97  LRNNPSVKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQSKGVAGDQVSLVSYGKE 153

Query: 317 HHRLKIASDPMNSANRRIDI 336
              +   ++   + NRR  I
Sbjct: 154 KPAVLGHTEADYAKNRRAVI 173


>gi|29347895|ref|NP_811398.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572488|ref|ZP_04849890.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298387855|ref|ZP_06997405.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|29339797|gb|AAO77592.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837903|gb|EES65992.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298259460|gb|EFI02334.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 366

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           + +   +    F  +S+    +    +  + E L  +    + + G+ DA+     ++ N
Sbjct: 258 VVVQPMKQDIFFALNSAKIQDDQKSKINMLVEYLQKNPSAKVKVTGYADAN--TGNSKIN 315

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             LS  RA +  +VL   G++ DRI   S          +        R+ I +
Sbjct: 316 KTLSEKRAANVAEVLKTKGITPDRIIADS-KGDTVQPYKT----PEENRVSICI 364


>gi|319952777|ref|YP_004164044.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237]
 gi|319421437|gb|ADV48546.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237]
          Length = 301

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 237 FDKSSSI--PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+   +           +  I + L        S+ GHTD+         N  L  +RA 
Sbjct: 198 FNTGEAAITLTVSERQKIAAISKYLDKIEGANCSVVGHTDSQ---GNRITNIGLGQERAD 254

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILV 338
            A Q L ++G+   +I   S      +    +D   S NRR  I +
Sbjct: 255 FAKQYLSENGILASKIIATSKGPDTPIATNDTDEGRSQNRRTVITL 300


>gi|258624664|ref|ZP_05719599.1| lateral flagellar MotY-like protein [Vibrio mimicus VM603]
 gi|258583056|gb|EEW07870.1| lateral flagellar MotY-like protein [Vibrio mimicus VM603]
          Length = 366

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRL 287
           D+     F         E  + L+ +   +        + + G+TD       +  N  +
Sbjct: 234 DREVVIYFAFGQRTLSNEQKMRLRALYRYIVEDSRVNTVLVDGYTDNV---GPSVANLTI 290

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           S  RA    + L + G++E+++  +          ++D     + NRR+ +
Sbjct: 291 SRQRAELIAKELNRLGLAEEKVE-VRAHGLRYPVASNDTAAGQAKNRRVTL 340


>gi|114800514|ref|YP_760698.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114740688|gb|ABI78813.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 387

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292
           F+   S    +   V+ +    +          ++I GHTD          N RLS+ RA
Sbjct: 281 FEWDRSDVTSQAAAVIDQAVANIRSVEGCAAGSVTIVGHTDT---SGNPDYNQRLSVRRA 337

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDILVE 339
                 L + G++   I++  G     L  A+        NRR  + I+V+
Sbjct: 338 DVVAAALSERGIANTLITQ-DGKGETALAKATQDGVREPLNRRSEVTIIVQ 387


>gi|331014336|gb|EGH94392.1| OmpA family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 447

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F +SS+    +    L+++ E L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQSSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|330888144|gb|EGH20805.1| ompA family protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 71

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341
           N +LS DRA +   VLM  GV E RI  + G+       A+  +   + NRR++I+  D 
Sbjct: 5   NLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIVFSDE 63

Query: 342 QG 343
           +G
Sbjct: 64  KG 65


>gi|126736504|ref|ZP_01752245.1| OmpA/MotB [Roseobacter sp. CCS2]
 gi|126714042|gb|EBA10912.1| OmpA/MotB [Roseobacter sp. CCS2]
          Length = 526

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS         + ++  +L+            G TD+         N +LS  RA 
Sbjct: 414 FETGSSNLDARAQDDIVRLARLLSSDAYRNKEAVFVGFTDSV---GDPELNRQLSERRAG 470

Query: 294 SAYQVLMKSG--VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              Q L+     +  +   +  G+          ++     NRR+++ V D
Sbjct: 471 QVVQELLDENPDLQSNVALQTIGYGEISPLGCNETNTGRRINRRVEVWVRD 521


>gi|150026440|ref|YP_001297266.1| OmpA family outer membrane protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772981|emb|CAL44465.1| Probable outer membrane protein, OmpA family [Flavobacterium
           psychrophilum JIP02/86]
          Length = 624

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    E    L K+  V+    E++     HTD+   R   + N  LS  RA S 
Sbjct: 519 FDFNKSNITQEGAAELDKLVAVMTKYPEMVIFAKSHTDS---RGDDKYNMLLSDRRAKST 575

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDR 341
            Q ++  G++ +RI+   GF     K+     ++  +  NRR + ++  +
Sbjct: 576 VQYIISKGIAVNRITG-EGFGKSEPKVQCDKCTEAEHQKNRRSEFMIVKK 624


>gi|330957747|gb|EGH58007.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 301

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        I + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDAAAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                   GV E +I+ +           +
Sbjct: 235 VMDYFKAQGVPEQQIT-LRFHGERYPLAPN 263


>gi|160889622|ref|ZP_02070625.1| hypothetical protein BACUNI_02048 [Bacteroides uniformis ATCC 8492]
 gi|156860614|gb|EDO54045.1| hypothetical protein BACUNI_02048 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +LA+  +   +   A    K  + E T+       +       F   S+       V ++
Sbjct: 245 ELAQAQADLANCKNALANAKPEVKEVTKE----VEVAGPRAIFFKIGSARLDDYGKVNIE 300

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
              ++L  + +    + G+ D +     A  N +LS  RA   Y  L+  GV +D++  +
Sbjct: 301 LAAKILKANPDKKYKVAGYADKA--TGSASWNQKLSEKRAQVVYDALIAQGVDKDQLELV 358

Query: 313 SGFAHHRLKIASDPMNSANRRIDIL 337
            GF         + +N    R+ IL
Sbjct: 359 -GFGGTENMFGKNFLN----RVVIL 378


>gi|120556584|ref|YP_960935.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326433|gb|ABM20748.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8]
          Length = 146

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           I +L++    +       + I GH D   F +   + + L+  RA +  ++L++ GVS+ 
Sbjct: 52  IDMLKRHAAYIKGHPGMQVRIHGHADN--FGSAEYNRF-LARLRANAVARLLIQEGVSQS 108

Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDI 336
            I   +  +   L    D  ++ANRR+++
Sbjct: 109 SILLATWGSDRPLTRPED--HAANRRVEL 135


>gi|269302570|gb|ACZ32670.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 192

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S     E  + +L  +   +  + +  + I GHTD    R  A  N  L   RA +
Sbjct: 88  FATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDE---RGAASYNLALGARRANA 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
             + L K G+S DR+  IS    H L    + +    NRR +  +  R
Sbjct: 145 IKEHLRKQGISADRLPTISYGKEHPLNSGHNELAWQQNRRTEFKIHAR 192


>gi|308049997|ref|YP_003913563.1| peptidoglycan-associated lipoprotein [Ferrimonas balearica DSM
           9799]
 gi|307632187|gb|ADN76489.1| peptidoglycan-associated lipoprotein [Ferrimonas balearica DSM
           9799]
          Length = 175

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +   +L+     L  +    + I GH D    R     N  L   RA + 
Sbjct: 75  FDFDRSDVSGQYAELLEAHAAFLVENPSTKVLIEGHADE---RGTPEYNIALGERRAKAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            + L   GV   +I+ +S +   +     A+D  ++ NRR
Sbjct: 132 ERYLQGLGVLSSQITIVS-YGEEKPLDSSATDAAHAKNRR 170


>gi|300309835|ref|YP_003773927.1| outer membrane protein peptidoglycan-associated (lipo)protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072620|gb|ADJ62019.1| outer membrane protein peptidoglycan-associated (lipo)protein
           [Herbaspirillum seropedicae SmR1]
          Length = 232

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 35/174 (20%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
              +   LQ L K+ S  L    A+ +            + I   D   T +F   S+  
Sbjct: 48  EETKSDMLQALQKEFSRDLKQWNAELLGD----------MTIRFNDP--TVLFATGSAEL 95

Query: 245 LPETIVVLQKI---------GEVLAHSTEVISIRGHTD-----ASPFRNIARDNWRLSLD 290
            P+   +L+            +    + + I I GHT      ++  +     N  LS  
Sbjct: 96  RPKFKQILRDFFPRYVTMLTSDKYRDAIKEIRIEGHTSRSWTNSTDTKTAYFLNMELSQA 155

Query: 291 RAYSAYQVLMKSGVSEDR----ISKIS--GFAHHRLKIASDPMNS---ANRRID 335
           R  SA + L++    E +    +  ++  G +  +     D   +   AN+R++
Sbjct: 156 RTRSALEFLLRLPAVERQQDWLVGHVTANGLSSSKPISPDDNSAAAQLANQRVE 209


>gi|84500927|ref|ZP_00999162.1| peptidoglycan-associated protein [Oceanicola batsensis HTCC2597]
 gi|84390994|gb|EAQ03412.1| peptidoglycan-associated protein [Oceanicola batsensis HTCC2597]
          Length = 153

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRL 287
            D+     F    S    +    L +   +    +  V+ + G+ D       A  N  L
Sbjct: 44  QDEGLQVYFPSGVSSLSQQAAAKLDRAARLYRDGNPIVMIVSGNADTV---GSAAANLDL 100

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
           SL RA +    L+  G+  DR+ ++ G  +  L + ++    NS NR + I
Sbjct: 101 SLRRARTVASGLVSRGIPIDRL-QVVGRGNSELPVPTENGVANSENRSVSI 150


>gi|186682294|ref|YP_001865490.1| OmpA/MotB domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186464746|gb|ACC80547.1| OmpA/MotB domain protein [Nostoc punctiforme PCC 73102]
          Length = 594

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVL-- 252
           A+K+ + + G+      K V  E +   + +S I  ++    F + ++  +P  I  L  
Sbjct: 439 ARKLWTFIPGITQFQDQKLVEIELSE--LRLSKIKIEKEIFFFTEGTTELMPGEIDKLPN 496

Query: 253 --------QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
                     I + L  +   I I GHT+++      R N  LS  RA      L+  G+
Sbjct: 497 LFLSIRKCLNIAKYLGKNV-QIQIIGHTNST---GTERRNRPLSQARANKILSYLISQGI 552

Query: 305 SEDRISKISGFAH--HRLKIASDPMNSANRRIDILVE 339
             ++   ++  +    + ++ S+     NRR+   V 
Sbjct: 553 KINQFQALTVSSSLTSQPELTSESKE-FNRRVSFKVL 588


>gi|194435106|ref|ZP_03067342.1| OmpA family protein [Shigella dysenteriae 1012]
 gi|194416637|gb|EDX32770.1| OmpA family protein [Shigella dysenteriae 1012]
 gi|332089196|gb|EGI94303.1| ompA family protein [Shigella dysenteriae 155-74]
          Length = 127

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTVQGRAENRRVAVVITT 126


>gi|319940886|ref|ZP_08015225.1| OmpA domain-containing protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805768|gb|EFW02549.1| OmpA domain-containing protein [Sutterella wadsworthensis 3_1_45B]
          Length = 176

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S    PE   V++   + LA +    I I+G+TD    R     N  L   R+ + 
Sbjct: 64  FAFDSYEVSPEYAAVVEAHAKWLAANPEVKIVIQGNTDE---RGGREYNLALGQKRSEAV 120

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            Q L   G+   RI  +S G         S+   + NRR DI+
Sbjct: 121 LQRLQLLGIPSSRIEAVSFGKEKPIALGHSEEAWAQNRRADIV 163


>gi|145298280|ref|YP_001141121.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851052|gb|ABO89373.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 333

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 213 LFAFGKSTLKPEGVAALNTLYQQIVDVQPKDGSAVVVGYTD--RIGSDAY-NLKLSEARA 269

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G+   ++  I G         +  D + +          +RR+++ V   
Sbjct: 270 RTVADFLVGKGLPAGKV-AIEGRGEASPVTGTQCDGIKAKAQLIACLAPDRRVEVRVTGI 328

Query: 342 Q 342
           Q
Sbjct: 329 Q 329


>gi|171059315|ref|YP_001791664.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170776760|gb|ACB34899.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 271

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+      + V+ +I  +    +   + I GH D          N RLS  RA + 
Sbjct: 165 FKPGSAQLEQAAMPVVHQIAALAQRCSRWRVIIEGHADT---SGDPVQNERLSRRRAAAV 221

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDILV 338
              ++  GV  D+I  +   A   +  +SD   S  NRRI+  +
Sbjct: 222 AAAMILEGVPLDQIESVGRGASRPIAASSDAQASVKNRRIEFHL 265


>gi|53714190|ref|YP_100182.1| putative outer membrane protein [Bacteroides fragilis YCH46]
 gi|52217055|dbj|BAD49648.1| putative outer membrane protein [Bacteroides fragilis YCH46]
          Length = 480

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 378 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRASF 435

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 436 ITAELEQRGIPAKRIIRVSKGGIADYTPVEAN 467


>gi|298383525|ref|ZP_06993086.1| outer membrane protein [Bacteroides sp. 1_1_14]
 gi|298263129|gb|EFI05992.1| outer membrane protein [Bacteroides sp. 1_1_14]
          Length = 466

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDA---SPFRNIARDNWRLSLDR 291
            F+ +++     + ++ L ++  V       + + G  D+   +P  N +     LS  R
Sbjct: 368 FFNLNTAHLTDASQMLNLDELARVAKKYGLSVKVTGAADSSTGTPVLNGS-----LSTLR 422

Query: 292 AYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
           A      L K G+  +RI K+S  G A H    A+
Sbjct: 423 ADHIVAELEKRGIPIERIVKVSRGGIADHVPVEAN 457


>gi|262382901|ref|ZP_06076038.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B]
 gi|262295779|gb|EEY83710.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B]
          Length = 389

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
            N  +F  + +   P   V +  I + L  +    + + G+TD       ++ N +LS +
Sbjct: 286 NNVVLFKINQTKVDPYQGVNIYNIAQYLKDNPQFKVRVIGYTDRK--TGTSQINEKLSAE 343

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
           RA +  ++L+   G+S DR+  +               N A
Sbjct: 344 RAQNVARILISDYGISRDRVI-VEWVGDKEPPFDKPEWNRA 383


>gi|160886684|ref|ZP_02067687.1| hypothetical protein BACOVA_04696 [Bacteroides ovatus ATCC 8483]
 gi|254883551|ref|ZP_05256261.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|156107095|gb|EDO08840.1| hypothetical protein BACOVA_04696 [Bacteroides ovatus ATCC 8483]
 gi|254836344|gb|EET16653.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 466

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDA---SPFRNIARDNWRLSLDR 291
            F+ +++     + ++ L ++  V       + + G  D+   +P  N +     LS  R
Sbjct: 368 FFNLNTAHLTDASQMLNLDELARVAKKYGLSVKVTGAADSSTGTPVLNGS-----LSTLR 422

Query: 292 AYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
           A      L K G+  +RI K+S  G A H    A+
Sbjct: 423 ADHIVAELEKRGIPIERIVKVSRGGIADHVPVEAN 457


>gi|261493427|ref|ZP_05989952.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261310921|gb|EEY12099.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 153

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  Q NT  F   S     E   +L    ++LA +   ++I GH D    R     N  
Sbjct: 46  QLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADE---RGTPEYNIA 102

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   G +    +    +   +  +   S+   + NRR
Sbjct: 103 LGQRRADAVKGYLAAKGANN---TSTVSYGEEKPAVLGHSEADYAKNRR 148


>gi|261496884|ref|ZP_05993252.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261307408|gb|EEY08743.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 157

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  Q NT  F   S     E   +L    ++LA +   ++I GH D    R     N  
Sbjct: 50  QLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADE---RGTPEYNIA 106

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   G +    +    +   +  +   S+   + NRR
Sbjct: 107 LGQRRADAVKGYLAAKGANN---TSTVSYGEEKPAVLGHSEADYAKNRR 152


>gi|171058626|ref|YP_001790975.1| peptidoglycan-associated lipoprotein [Leptothrix cholodnii SP-6]
 gi|170776071|gb|ACB34210.1| peptidoglycan-associated lipoprotein [Leptothrix cholodnii SP-6]
          Length = 196

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +       V++   + L       + I GHTD    R     N  L   RA + 
Sbjct: 95  FDFDSYVVKDTYRPVIEANAKYLGVDRKRQMLIEGHTDE---RGGREYNLALGQRRAEAV 151

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV + +   +S +   R     A +   + NRR ++
Sbjct: 152 VRALALLGVPDSQTEAVS-YGEERPAASGADEAAWAKNRRAEL 193


>gi|254360704|ref|ZP_04976852.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica PHL213]
 gi|153091274|gb|EDN73248.1| peptidoglycan-associated outer membrane lipoprotein [Mannheimia
           haemolytica PHL213]
          Length = 161

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  Q NT  F   S     E   +L    ++LA +   ++I GH D    R     N  
Sbjct: 54  QLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADE---RGTPEYNIA 110

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   G +    +    +   +  +   S+   + NRR
Sbjct: 111 LGQRRADAVKGYLAAKGANN---TSTVSYGEEKPAVLGHSEADYAKNRR 156


>gi|270157638|ref|ZP_06186295.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|269989663|gb|EEZ95917.1| conserved hypothetical protein [Legionella longbeachae D-4968]
          Length = 230

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           K  ++    ++  L    A ++ +          I     D  +  +FD  SS+  P   
Sbjct: 43  KEFEETKSDLAQALQKEFAKDLSQWNAELLGDMTIR---FDNPD-VLFDTGSSVVKPAFK 98

Query: 250 VVLQKIGE----VLAHSTEV-----ISIRGHTD-----ASPFRNIARDNWRLSLDRAYSA 295
            +L         +++          I I GHT       +  +     N RLS +RA S 
Sbjct: 99  RILNDFIPRYISLVSSEKYRNSIKEIRIEGHTSKKWALDTDEKTAYIKNMRLSQERAQSM 158

Query: 296 YQVLMK--SGVSEDRISK----ISGFAHHRLKIASDPMNSANR--RIDILVED 340
            + ++   S +  ++  +     SGF+  +       +   NR  R++ ++  
Sbjct: 159 LEYILSLPSLLEHEKWMRKYLTSSGFSSSKPVFNQLHIADDNRSQRVEFVIVT 211


>gi|46397579|gb|AAS91718.1| OmpA [Bibersteinia trehalosi]
 gi|46397584|gb|AAS91722.1| OmpA [Bibersteinia trehalosi]
 gi|46397589|gb|AAS91726.1| OmpA [Bibersteinia trehalosi]
 gi|46397594|gb|AAS91730.1| OmpA [Bibersteinia trehalosi]
          Length = 360

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +         L     E+  L  +T  I + G+TD          N  LS  RA
Sbjct: 240 LFDFGKANLKSAAKQSLDAAHAEIQNLGLATPAIQVNGYTDRI---GKDAPNLALSQRRA 296

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            S    ++  GV+ + I+ + G+        +               + +RR+++ V+  
Sbjct: 297 ESVANYMVSKGVAPESITAV-GYGKANPVTGNTCDAVKGRKALIACLAPDRRVELQVQGS 355

Query: 342 Q 342
           +
Sbjct: 356 K 356


>gi|327404032|ref|YP_004344870.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319540|gb|AEA44032.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 734

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     P+  V L KI  ++      VI +  HTD    R  A  N  LS  RA ++
Sbjct: 621 FDLAKYDIRPDAAVELDKIVAIMNEFPTMVIELGSHTDC---RGTALKNLELSQKRADAS 677

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRIDILV 338
              +        RI    G+   ++               ++  +S NRR + LV
Sbjct: 678 ANYIKSKIKDPYRI-AGKGYGETKILNGCSCEGPKKQPKYTEAQHSVNRRTEFLV 731


>gi|325578440|ref|ZP_08148575.1| lipoprotein PlpD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160176|gb|EGC72305.1| lipoprotein PlpD [Haemophilus parainfluenzae ATCC 33392]
          Length = 285

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD            V+  +   L  +    + + G+TD          N  LS  R
Sbjct: 148 GDFLFDFDKDTLTARGKEVVDSVAAQLKETGAKDVKVAGYTDRL---GSDAYNLDLSQRR 204

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----------NSANRRIDI 336
           A      L++ GV+ + I+ I G+  +    A D               NRR++I
Sbjct: 205 ANRVKARLLQDGVTSE-ITAI-GYGKNPQVKACDGYKHGSKAEKDCLRPNRRVEI 257


>gi|121998194|ref|YP_001002981.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1]
 gi|121589599|gb|ABM62179.1| OmpA/MotB domain protein [Halorhodospira halophila SL1]
          Length = 321

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S       +  +++    +  +    VI   G+ D    R  A  N +L+  RA +
Sbjct: 219 FATGSDDLTRNALDEIRRFVRAVEDNPHWGVILSIGYADT---RGSAEVNEQLAEARASA 275

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP-----MNSANRRIDI 336
               L+  G+ EDRI         RL    D        + NRR+++
Sbjct: 276 VRDELVHLGLPEDRIEV-----EARLIDDEDAEQDIHELAGNRRVEL 317


>gi|119387029|ref|YP_918084.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377624|gb|ABL72388.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222]
          Length = 711

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           FD  SS   P+    L  +G+V+  S       I  I G+TDA         N  LS  R
Sbjct: 600 FDTGSSAITPDQAQELATLGKVIRDSIDQDPREIYMIEGYTDAV---GSDAANLALSDRR 656

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S    L +          + G+    L + +D     NRR+ +
Sbjct: 657 AESVALALTEYFQVPPENMVVQGYGEQFLLVPTDGPERQNRRVAV 701


>gi|323529167|ref|YP_004231319.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323386169|gb|ADX58259.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001]
          Length = 366

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 244 PLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
            LP     L ++   L    +V  I I G+TD          N +LS  RA +  + L  
Sbjct: 245 MLPAGKAKLDQLVRDLKQVDDVTGIRIEGYTDRL---GSESYNRQLSTRRAETVKRYLQN 301

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335
            GVS        G       +  +  N        + NRR++
Sbjct: 302 GGVSTP--IAARGRGKDNPVVQCNDRNRQALIDCLAPNRRVE 341


>gi|15604604|ref|NP_221122.1| peptidoglycan-associated lipoprotein precursor (pal) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861299|emb|CAA15198.1| PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN PRECURSOR (pal) [Rickettsia
           prowazekii]
 gi|292572420|gb|ADE30335.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia
           prowazekii Rp22]
          Length = 155

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSSLSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGTREYNLALGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
            Q L   G++ +R++ IS +   +  +  +   +   NRR
Sbjct: 110 KQFLANKGIAHNRLNTIS-YGKDKPAMIGNTEEAFSYNRR 148


>gi|319902635|ref|YP_004162363.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319417666|gb|ADV44777.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 386

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR--LSLDRA 292
            F   S+       V +Q   + L  +++    I G+ D    +     +W   LS  RA
Sbjct: 290 FFKIGSAKIDDYGKVNIQLAAKTLKGNSDRKYKIAGYCD----KATGSSSWNQKLSEKRA 345

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            + Y  L+  GV +D++  + GF         + +N    R+ IL
Sbjct: 346 QAVYDALIAEGVDKDQLELV-GFGGTENMFGKNFLN----RVVIL 385


>gi|296445979|ref|ZP_06887929.1| peptidoglycan-associated lipoprotein [Methylosinus trichosporium
           OB3b]
 gi|296256497|gb|EFH03574.1| peptidoglycan-associated lipoprotein [Methylosinus trichosporium
           OB3b]
          Length = 167

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  SS         L K  + L        ++ GH D    R     N+ L   R
Sbjct: 58  DRIYFETDSSELTSTAQTTLDKQVDWLQRYGRYSFTVEGHADE---RGTREYNFALGARR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A  A   L+  G+S  RI  IS +   R     D ++  S NRR
Sbjct: 115 AEVAKNYLVSRGLSAARIRTIS-YGKERPVAVCDDISCWSQNRR 157


>gi|262198940|ref|YP_003270149.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262082287|gb|ACY18256.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 570

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           +  +     ++ VL ++  VL    E  + I  H      R  A  N RLS  RA +   
Sbjct: 464 RGGA-LRERSLPVLDELAAVLTAHPELRVRIEVHVAE---RRDAAANQRLSEQRAAAVRA 519

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
            L++ G+ E+R+   +G     L+  ++    
Sbjct: 520 YLLRRGLDEERVEG-AGMGESALRGDTEAAAR 550


>gi|124262903|ref|YP_001023373.1| outer membrane protein [Methylibium petroleiphilum PM1]
 gi|124262149|gb|ABM97138.1| outer membrane protein [Methylibium petroleiphilum PM1]
          Length = 217

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD ++++ L     ++ ++ + L      + + GH D+         N RLS  RA +  
Sbjct: 121 FDGATALDLSPATALIPRVTQGLG-----LRLTGHADSQ---GSDLYNLRLSERRARAVS 172

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
           +V + +G+S DR+  I G     L   +D   + NRR++I +   + 
Sbjct: 173 KVFLGAGISADRLE-IEGRGERDLIDLAD--GAKNRRVEIRLVGGEA 216


>gi|166712982|ref|ZP_02244189.1| outer membrane protein P6 precursor [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 172

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168


>gi|15602831|ref|NP_245903.1| hypothetical protein PM0966 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18202558|sp|Q51886|PAL_PASMU RecName: Full=Outer membrane protein P6; Short=OMP P6; AltName:
           Full=P6-like; AltName: Full=Peptidoglycan-associated
           lipoprotein; Flags: Precursor
 gi|841126|gb|AAA79373.1| outer membrane protein, similar to Haemophilus influenzae outer
           membrane protein P6, Swiss-Prot Accession Number P10324
           [Pasteurella multocida]
 gi|12721291|gb|AAK03050.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 150

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 40  DLQQRYNTVYFGFDKYNIEGEYVQILDAHAAFLNATPATKVVVEGNTDE---RGTPEYNI 96

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 97  ALGQRRADAVKHYLSAKGVQAGQVSTVS-YGEEKPAVLGHDEAAYSKNRR 145


>gi|297192373|ref|ZP_06909771.1| secreted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197723026|gb|EDY66934.1| secreted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 203

 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+    E    +  I  E+   + + I + G TD            +LS +RA +
Sbjct: 98  LFGKDSAELSGEATSRISAIAVEIKNQNAKKIRVFGFTDDLGTEAHGD---KLSKERADA 154

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            + VL +   +E    +I G+       ++  +     NRR+++
Sbjct: 155 VHSVLAQQLSAEGITYEIRGYGEDYPIASNTSEEGRRKNRRVEV 198


>gi|45758067|gb|AAO85792.1| heat-modifiable outer membrane protein [Mannheimia glucosida]
          Length = 367

 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L      +++       I + G+TD          N +LS  RA
Sbjct: 247 LFDFGKSSLKPAAATSLDAAHAEISNLGLANPAIQVNGYTDRI---GKEASNLKLSQRRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|331664170|ref|ZP_08365079.1| YfiB [Escherichia coli TA143]
 gi|331058627|gb|EGI30605.1| YfiB [Escherichia coli TA143]
          Length = 160

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 52  DAILFAKNDYKLLPESQQQIQTMAVKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 109 ANVVADAWAMGGKIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


>gi|302875501|ref|YP_003844134.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687955|ref|ZP_07630401.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578358|gb|ADL52370.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 233

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 28/169 (16%)

Query: 191 RLQDLAKK---ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +L D+AK+   +   L   +   +   ++F+     + I     +   +F         E
Sbjct: 56  KLDDIAKQRAELYERLENDLKPKLGDDIIFDKENGRLEI-----KTEVLFQVDKYELTGE 110

Query: 248 TIVVLQKIGEVL---------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            + + +++ E               + + ++GHTD +   +  R    LS +RA S    
Sbjct: 111 GVKIAKEVSEAFYTLFSNPVYRDKIKYVEVKGHTDNTFLADYNRF---LSTNRAASFVNA 167

Query: 299 LMKSGVSEDRISK---ISGFAHHRLKIASDPMNS-----ANRRIDILVE 339
           ++ +G   +  +     SG +    K+ S    S      NRRI+I +E
Sbjct: 168 MVPNGSKYEEYAAYFKSSGMSKFEPKVGSVDGQSMVEQDQNRRIEINIE 216


>gi|189402632|ref|ZP_02783681.2| OmpA family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189406165|ref|ZP_02826729.2| OmpA family protein [Escherichia coli O157:H7 str. EC508]
 gi|189354554|gb|EDU72973.1| OmpA family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189376183|gb|EDU94599.1| OmpA family protein [Escherichia coli O157:H7 str. EC508]
          Length = 127

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITP 126


>gi|162450403|ref|YP_001612770.1| hypothetical protein sce2131 [Sorangium cellulosum 'So ce 56']
 gi|161160985|emb|CAN92290.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 327

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 17/206 (8%)

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            +  + +  E+G     + D   +        + P + +        +   +    +   
Sbjct: 79  SQARVRQLEEQGPRGGAAADPHWANGPSSGLDVEPGATQPRGEPAGARPASERDSDVLRA 138

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
              + A +    V        ++ISI    +  +F  +     P    VL+ I  ++  +
Sbjct: 139 FLPVAAGD----VTVAPRDGRVVISI---PSRVLFKGNRDALSPAGEKVLRDIAAIIRSN 191

Query: 263 T----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM---KSGVSEDRISKISGF 315
                    + GHT +       R+ W +++ +A +    L    ++GV   R+S  S F
Sbjct: 192 EPLKGLAYQVVGHTASGTPGVAWRNGWDVTVAQARAVLLFLAQPKEAGVPLARLSLAS-F 250

Query: 316 AHHRLKIA--SDPMNSANRRIDILVE 339
           A      A    P      R++I++E
Sbjct: 251 ADLPPADAGGGAPAQPQEPRVEIVIE 276


>gi|297538334|ref|YP_003674103.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301]
 gi|297257681|gb|ADI29526.1| OmpA/MotB domain protein [Methylotenera sp. 301]
          Length = 377

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 14/112 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           +F    S        +L  +   L   +E  ++ + G+TD     + A  N +LS  RA 
Sbjct: 256 LFGFDKSKLQDGAKPILDGVVAKLKEHSEFKLVMVTGYTD--RIGSEAY-NQKLSEHRAN 312

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDIL 337
                ++  G+   R+  + G       +    +         + NRR+ IL
Sbjct: 313 EVKDYIVSQGIDAGRLQAV-GKGESEAVVDCKGIKGKKLISCLAPNRRVVIL 363


>gi|293603403|ref|ZP_06685830.1| peptidoglycan-associated lipoprotein [Achromobacter piechaudii ATCC
           43553]
 gi|292818176|gb|EFF77230.1| peptidoglycan-associated lipoprotein [Achromobacter piechaudii ATCC
           43553]
          Length = 166

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285
           SI+ Q+ +  FD  S     +   +++     LA H  + + I G+TD    R  A  N 
Sbjct: 54  SILAQQRSVYFDFDSYTVSDQYRGLVETHARYLASHQQQKVKIEGNTDE---RGGAEYNL 110

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            L   RA +  +++   GVS+++I  IS G    +    S+   + NRR DI
Sbjct: 111 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKSTGTSEADFAENRRADI 162


>gi|293390339|ref|ZP_06634673.1| lipoprotein PlpD [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950873|gb|EFE00992.1| lipoprotein PlpD [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 274

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        +   V+ K+   L  S  + + + G+TD          N  LS  RA  
Sbjct: 144 LFDFDKDTLTVKGREVVDKVAAQLKESKAQEVKVAGYTDRL---GSKVYNMDLSQRRADR 200

Query: 295 AYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSA-------NRRIDI 336
               L++ G+   +I+ + G+   H+++  ++  +S        NRR++I
Sbjct: 201 VKNRLIEQGID-VQINTV-GYGEAHQVQACNNVKSSQLISCLRPNRRVEI 248


>gi|170751934|ref|YP_001758194.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658456|gb|ACB27511.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 348

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I   +  +       +  I G TDA      A DN  LS  R
Sbjct: 222 FDTGSFTVTPDQAAKLSGIAGAMNRAIQANPREVFLIEGFTDAV---GSALDNLSLSDRR 278

Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           A +   VL  +  V  + ++   G+    LK+ +   +  NRR+
Sbjct: 279 AQAVATVLTEQFRVPPENLT-TQGYGEQYLKVNTQGPSRENRRV 321


>gi|167563920|ref|ZP_02356836.1| outer membrane protein, OmpA family [Burkholderia oklahomensis
           EO147]
 gi|167571055|ref|ZP_02363929.1| outer membrane protein, OmpA family [Burkholderia oklahomensis
           C6786]
          Length = 170

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVQDQYQALLQQHAQYLKGHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G          +   + NRR D++
Sbjct: 125 RRALSLLGVTDSQMEAVSLGKEKPVALGHDEASWAQNRRADLV 167


>gi|94311606|ref|YP_584816.1| OmpA/MotB [Cupriavidus metallidurans CH34]
 gi|93355458|gb|ABF09547.1| peptidoglycan-associated outer membrane lipoprotein [Cupriavidus
           metallidurans CH34]
          Length = 169

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ   + L ++ +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 69  FDFDSYSVKQDYQGMLQAHSQYLGSNKSRKILIQGNTDE---RGTSEYNLALGQKRAEAV 125

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     D   + NRR DI+
Sbjct: 126 RRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWAENRRADIV 168


>gi|258621416|ref|ZP_05716450.1| peptidoglycan-associated lipoprotein [Vibrio mimicus VM573]
 gi|258586804|gb|EEW11519.1| peptidoglycan-associated lipoprotein [Vibrio mimicus VM573]
          Length = 173

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 54  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLKVTIEGHADE-- 111

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 112 -RGTPEYNIALGERRAQAVAKYLEALGVQSGQVSIVS-YGEEKPLVLGQSEDAYAKNRR 168


>gi|189346280|ref|YP_001942809.1| peptidoglycan-associated lipoprotein [Chlorobium limicola DSM 245]
 gi|189340427|gb|ACD89830.1| peptidoglycan-associated lipoprotein [Chlorobium limicola DSM 245]
          Length = 169

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               FD  SSI   E    L +    L  +    + I GH D    R  +  N  L   R
Sbjct: 64  GDVFFDYDSSILATEAQNRLTQNAAWLKSNAGKSVVIEGHCDD---RGTSEYNIALGERR 120

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A +A + + + GVS  R+  ++ +   R      ++   + NRR
Sbjct: 121 AVTAKEFIARLGVSASRLETVT-YGEERPFDKGQNEEAWAKNRR 163


>gi|49187403|ref|YP_030655.1| chemotaxis protein motB, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227817293|ref|YP_002817302.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
 gi|254686999|ref|ZP_05150857.1| flagellar motor protein MotB [Bacillus anthracis str. CNEVA-9066]
 gi|254724562|ref|ZP_05186345.1| flagellar motor protein MotB [Bacillus anthracis str. A1055]
 gi|254736615|ref|ZP_05194321.1| flagellar motor protein MotB [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741653|ref|ZP_05199340.1| flagellar motor protein MotB [Bacillus anthracis str. Kruger B]
 gi|254754749|ref|ZP_05206784.1| flagellar motor protein MotB [Bacillus anthracis str. Vollum]
 gi|254757581|ref|ZP_05209608.1| flagellar motor protein MotB [Bacillus anthracis str. Australia 94]
 gi|49181330|gb|AAT56706.1| chemotaxis protein motB, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227002719|gb|ACP12462.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684]
          Length = 109

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 25  DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84
              +   +W I Y+D +T+L A F+V++ +++ D    K +   F        T +K   
Sbjct: 14  HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72

Query: 85  DEQNPPERSSQNKIDLSIDE 104
            +Q P +    +   L  ++
Sbjct: 73  SDQKPNDEKELSASSLETEQ 92


>gi|152996217|ref|YP_001341052.1| peptidoglycan-associated lipoprotein [Marinomonas sp. MWYL1]
 gi|150837141|gb|ABR71117.1| Peptidoglycan-associated lipoprotein [Marinomonas sp. MWYL1]
          Length = 192

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  PE+   L K  E L    +  I + GH D    R     N  L   RA + 
Sbjct: 91  FDFDKSIVRPESREALAKHAEYLVSHPDARIVLEGHADE---RGTREYNMALGERRAKAI 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + L   GV+  +I  +S F            N+   NRR+++
Sbjct: 148 SRYLTIQGVAASQIETVS-FGEEVPVAFGHDSNAWQLNRRVEV 189


>gi|189426515|ref|YP_001953692.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ]
 gi|189422774|gb|ACD97172.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ]
          Length = 188

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD   S    +    L K  E L    +   I I GH D    R     N  L   RA S
Sbjct: 85  FDFDKSDLRQDARDALSKNAEALLKKVADAKIKIEGHCDE---RGSDEYNLALGDRRAKS 141

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILV 338
             + L   GV  DRIS IS          SD    S NRR + ++
Sbjct: 142 VAKYLTTLGVKADRISTISYGKEKPAVQGSDEAAWSKNRRAEFVI 186


>gi|262149046|ref|ZP_06028189.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae INDRE 91/1]
 gi|262031146|gb|EEY49767.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae INDRE 91/1]
          Length = 133

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 14  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADE-- 71

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 72  -RGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVS-YGEEKPLVLGQSEEAYAKNRR 128


>gi|317047358|ref|YP_004115006.1| peptidoglycan-associated lipoprotein [Pantoea sp. At-9b]
 gi|316948975|gb|ADU68450.1| peptidoglycan-associated lipoprotein [Pantoea sp. At-9b]
          Length = 170

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E   +L +    L  +    ++I GH D    R     N  L   RA + 
Sbjct: 70  FGLDKYDVQSEYAQMLDQHAAFLRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAV 126

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D++S +S +   +  +    +   + NRR
Sbjct: 127 KMYLQGKGVSADQMSIVS-YGKEKPAVLGHDEAAYAKNRR 165


>gi|229587133|ref|YP_002845634.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia africae
           ESF-5]
 gi|228022183|gb|ACP53891.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia africae
           ESF-5]
          Length = 155

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSSALSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGTKEYNLGLGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L+  G+  +R++ IS +   R  +  +     + NRR
Sbjct: 110 QKFLVHKGIDHNRLNTIS-YGKERPAMMGNTEEAFAYNRR 148


>gi|126725476|ref|ZP_01741318.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2150]
 gi|126704680|gb|EBA03771.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2150]
          Length = 216

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWR 286
           D      F + S I + E    L  +  +L +S+     + + GH+D       A+ N+ 
Sbjct: 104 DYDYRIHFPQGSDIIVEEFGQHLDMLAGILQYSSLSQTCLKLVGHSDT---SGSAKANFN 160

Query: 287 LSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           + + RA +    L  ++  +  RI  ++              +  NRR++I
Sbjct: 161 MGMLRAKAVKGYLTNRTAFASTRIE-VTSEGEDAPLQGISTTDPKNRRVEI 210


>gi|227327557|ref|ZP_03831581.1| peptidoglycan-associated outer membrane lipoprotein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|253687644|ref|YP_003016834.1| peptidoglycan-associated lipoprotein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|261822329|ref|YP_003260435.1| peptidoglycan-associated outer membrane lipoprotein [Pectobacterium
           wasabiae WPP163]
 gi|251754222|gb|ACT12298.1| peptidoglycan-associated lipoprotein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|261606342|gb|ACX88828.1| peptidoglycan-associated lipoprotein [Pectobacterium wasabiae
           WPP163]
          Length = 169

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
             +  G   + ++ G    ++    + +  + + N   F         E   +L      
Sbjct: 31  DQSSMGAGNNGMMDGGNMSSSEQARLQMQELQRNNIVYFGLDKYDVSSEFAQMLDAHAAF 90

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFA 316
           L  +    ++I GH D    R     N  L   RA +    L   GVS D+IS +S G  
Sbjct: 91  LRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAVQMYLQGKGVSSDQISIVSYGKE 147

Query: 317 HHRLKIASDPMNSANRR 333
              +    +   + NRR
Sbjct: 148 KPAVLGHDEAAYAKNRR 164


>gi|170769100|ref|ZP_02903553.1| peptidoglycan-associated lipoprotein [Escherichia albertii TW07627]
 gi|170122172|gb|EDS91103.1| peptidoglycan-associated lipoprotein [Escherichia albertii TW07627]
          Length = 175

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 75  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D+IS +S +   +  +    +   + NRR
Sbjct: 132 KMYLQGKGVSADQISIVS-YGKEKPAVLGHDEAAYAKNRR 170


>gi|126736583|ref|ZP_01752323.1| OmpA/MotB [Roseobacter sp. CCS2]
 gi|126713896|gb|EBA10767.1| OmpA/MotB [Roseobacter sp. CCS2]
          Length = 513

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS         + ++  +L+            G TD+         N +LS  RA 
Sbjct: 401 FETGSSNLDARAQDDIVRLARLLSSDAYRNKEAVFVGFTDSV---GDPELNRQLSERRAG 457

Query: 294 SAYQVLMKSG--VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
              Q L+     +  +   +  G+          ++     NRR+++ V D
Sbjct: 458 QVVQELLDENPDLQSNVALQTIGYGEISPLGCNETNTGRRINRRVEVWVRD 508


>gi|189405293|ref|ZP_02814514.2| OmpA family protein [Escherichia coli O157:H7 str. EC869]
 gi|191169055|ref|ZP_03030818.1| OmpA family protein [Escherichia coli B7A]
 gi|193064020|ref|ZP_03045105.1| OmpA family protein [Escherichia coli E22]
 gi|194439333|ref|ZP_03071411.1| OmpA family protein [Escherichia coli 101-1]
 gi|256019576|ref|ZP_05433441.1| putative outer membrane lipoprotein [Shigella sp. D9]
 gi|301026824|ref|ZP_07190226.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|332280700|ref|ZP_08393113.1| outer membrane lipoprotein [Shigella sp. D9]
 gi|43146|emb|CAA25961.1| unnamed protein product [Escherichia coli]
 gi|189370879|gb|EDU89295.1| OmpA family protein [Escherichia coli O157:H7 str. EC869]
 gi|190900896|gb|EDV60682.1| OmpA family protein [Escherichia coli B7A]
 gi|192929255|gb|EDV82864.1| OmpA family protein [Escherichia coli E22]
 gi|194421695|gb|EDX37704.1| OmpA family protein [Escherichia coli 101-1]
 gi|299879570|gb|EFI87781.1| OmpA family protein [Escherichia coli MS 196-1]
 gi|315615303|gb|EFU95938.1| ompA family protein [Escherichia coli 3431]
 gi|323159124|gb|EFZ45117.1| ompA family protein [Escherichia coli E128010]
 gi|323184520|gb|EFZ69894.1| ompA family protein [Escherichia coli 1357]
 gi|332103052|gb|EGJ06398.1| outer membrane lipoprotein [Shigella sp. D9]
 gi|332344474|gb|AEE57808.1| outer membrane protein OmpA [Escherichia coli UMNK88]
          Length = 127

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|325274583|ref|ZP_08140640.1| peptidoglycan-associated lipoprotein [Pseudomonas sp. TJI-51]
 gi|324100285|gb|EGB98074.1| peptidoglycan-associated lipoprotein [Pseudomonas sp. TJI-51]
          Length = 146

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRL 320
           + L+  GVS  ++  +S +   R 
Sbjct: 124 RYLVLQGVSPAQLEVVS-YGEERP 146


>gi|288940580|ref|YP_003442820.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288895952|gb|ADC61788.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180]
          Length = 193

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 247 ETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
           E   +   I +V      E IS+ GHTDA   +     N++L L RA +    ++  G+S
Sbjct: 102 ELARLDDYIAQVKNSEVQERISLTGHTDA---KGSDAYNYQLGLRRAQAVQDYMISRGIS 158

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              I  +       +    D  +   RR+ I
Sbjct: 159 PQDIVSVESRGKSDMLPGVDIYSVEQRRVRI 189


>gi|227114918|ref|ZP_03828574.1| peptidoglycan-associated outer membrane lipoprotein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 170

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
            S++     + ++ G    ++    + +  + + N   F         E   +L      
Sbjct: 32  QSSMGTAGNNGMMDGGNMSSSEQARLQMQELQRNNIVYFGLDKYDVSSEFAQMLDAHAAF 91

Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFA 316
           L  +    ++I GH D    R     N  L   RA +    L   GVS D+IS +S G  
Sbjct: 92  LRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAVQMYLQGKGVSSDQISIVSYGKE 148

Query: 317 HHRLKIASDPMNSANRR 333
              +    +   + NRR
Sbjct: 149 KPAVLGHDEAAYAKNRR 165


>gi|156934764|ref|YP_001438680.1| peptidoglycan-associated outer membrane lipoprotein [Cronobacter
           sakazakii ATCC BAA-894]
 gi|260597140|ref|YP_003209711.1| peptidoglycan-associated outer membrane lipoprotein [Cronobacter
           turicensis z3032]
 gi|156533018|gb|ABU77844.1| hypothetical protein ESA_02604 [Cronobacter sakazakii ATCC BAA-894]
 gi|260216317|emb|CBA29304.1| Peptidoglycan-associated lipoprotein [Cronobacter turicensis z3032]
          Length = 172

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 72  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D+IS +S +   +  +    +   + NRR
Sbjct: 129 KMYLQGKGVSADQISIVS-YGKEKPAVLGHDEAAYAKNRR 167


>gi|330830631|ref|YP_004393583.1| major outer membrane protein ompAII [Aeromonas veronii B565]
 gi|328805767|gb|AEB50966.1| Major outer membrane protein ompAII [Aeromonas veronii B565]
          Length = 333

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 213 LFAFGKSTLKPEGVAALNTLYQQIVDVQPKDGSAVVVGYTD--RIGSDAY-NLKLSEARA 269

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDILV 338
            +    L+  G+   ++  I G         +   +           + +RR+++ V
Sbjct: 270 RTVADFLVGKGLPAGKV-AIEGRGEANPVTGTQCNSVKGKAQLISCLAPDRRVEVRV 325


>gi|328676430|gb|AEB27300.1| Outer membrane lipoprotein omp16 precursor [Francisella cf.
           novicida Fx1]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|290954085|ref|ZP_06558706.1| ompA family protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312516|ref|ZP_06803280.1| ompA family protein [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 363

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|269122961|ref|YP_003305538.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268314287|gb|ACZ00661.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2091

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL----ISIIDQRNTPM--FDK 239
            +++ ++L +  KK+      L  +N   G   +  R  I     I + +     +  +  
Sbjct: 1930 IEQNEKLINQNKKLEEDNDILRRENDRIGDEIKELRERIKAIEKIKMNEDDLYTLDGYRL 1989

Query: 240  SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                       +L  I   L  +     I I G+TD     +    N  L L RA    +
Sbjct: 1990 GIHELTKSQEEMLMNIVRELNENYKNRKIYITGYTDNV---SGEDLNLELGLKRANVVAK 2046

Query: 298  VLMKSGVSED---RISKISGFAHHRLKIASDPMNSANRRIDI 336
             L + G+      R    SG+ +      S    S+NRR++I
Sbjct: 2047 KLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRSSNRRVEI 2088


>gi|262066235|ref|ZP_06025847.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380091|gb|EFE87609.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 82

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +  +   +++ GHTD+    +    N  LS  RA +    L++ G++E+RI  I      
Sbjct: 1   IEQNNYEVTLEGHTDS--IGSNQY-NIGLSRRRAEAVKAKLIEFGLAEERIVGIEAKGEE 57

Query: 319 RLKIASDPMNSA--NRRIDILVEDR 341
                ++       NRR++  +  R
Sbjct: 58  YPVATNETPEGRLQNRRVEFRLVQR 82


>gi|208780408|ref|ZP_03247749.1| OmpA family protein [Francisella novicida FTG]
 gi|208743776|gb|EDZ90079.1| OmpA family protein [Francisella novicida FTG]
          Length = 408

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 61  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 116

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 117 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 174


>gi|254373800|ref|ZP_04989283.1| hypothetical protein FTDG_01584 [Francisella novicida GA99-3548]
 gi|151571521|gb|EDN37175.1| hypothetical protein FTDG_01584 [Francisella novicida GA99-3548]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|254372326|ref|ZP_04987817.1| OmpA family protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570055|gb|EDN35709.1| OmpA family protein [Francisella novicida GA99-3549]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|134302267|ref|YP_001122236.1| ompA family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050044|gb|ABO47115.1| ompA family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|118496956|ref|YP_898006.1| OmpA family protein [Francisella tularensis subsp. novicida U112]
 gi|194324185|ref|ZP_03057959.1| OmpA family protein [Francisella tularensis subsp. novicida FTE]
 gi|118422862|gb|ABK89252.1| OmpA family protein [Francisella novicida U112]
 gi|194321632|gb|EDX19116.1| OmpA family protein [Francisella tularensis subsp. novicida FTE]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|57339664|gb|AAW49819.1| hypothetical protein FTT0831 [synthetic construct]
          Length = 452

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 96  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 151

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 152 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 209


>gi|89255751|ref|YP_513113.1| OmpA family protein [Francisella tularensis subsp. holarctica LVS]
 gi|115314245|ref|YP_762968.1| OmpA family protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|167009203|ref|ZP_02274134.1| possible OmpA family protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656511|ref|YP_001427779.2| OmpA family protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|187931246|ref|YP_001891230.1| OmpA family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367123|ref|ZP_04983156.1| outer membrane protein ompA [Francisella tularensis subsp.
           holarctica 257]
 gi|89143582|emb|CAJ78765.1| OmpA family protein [Francisella tularensis subsp. holarctica LVS]
 gi|115129144|gb|ABI82331.1| possible OmpA family protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252946|gb|EBA52040.1| outer membrane protein ompA [Francisella tularensis subsp.
           holarctica 257]
 gi|164551579|gb|ABU60823.2| OmpA family protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|187712155|gb|ACD30452.1| OmpA family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|56707940|ref|YP_169836.1| OmpA family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670411|ref|YP_666968.1| OmpA family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457021|ref|ZP_03665494.1| OmpA family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370429|ref|ZP_04986434.1| OmpA family protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874744|ref|ZP_05247454.1| ompA family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114377|gb|AAV29822.1| NT02FT0718 [synthetic construct]
 gi|56604432|emb|CAG45464.1| OmpA family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320744|emb|CAL08847.1| OmpA family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568672|gb|EDN34326.1| OmpA family protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840743|gb|EET19179.1| ompA family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159125|gb|ADA78516.1| OmpA family protein [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 417

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKEVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|332088113|gb|EGI93238.1| ompA family protein [Shigella boydii 5216-82]
          Length = 127

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAQLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|312965520|ref|ZP_07779752.1| ompA family protein [Escherichia coli 2362-75]
 gi|312289940|gb|EFR17828.1| ompA family protein [Escherichia coli 2362-75]
          Length = 127

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA        + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASIGLTHARMDGHTDNY---GEDSYNEVLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|312891928|ref|ZP_07751431.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295559|gb|EFQ72725.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 571

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D   S   P+    L K+  VL       I +    D+   R     N  LS  RA +A
Sbjct: 461 YDLDKSFIRPDAAAELDKLSVVLKEHPALKIELSSFADS---RASYSYNLALSRRRATAA 517

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRID 335
              L+  GVS  R+   +G+    L          S+  +  NRR +
Sbjct: 518 VNYLVNKGVSISRVLA-NGYGKTHLVNQCADHVKCSEAEHQLNRRTE 563


>gi|302381978|ref|YP_003817801.1| peptidoglycan-associated lipoprotein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192606|gb|ADL00178.1| peptidoglycan-associated lipoprotein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 184

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S    PE    L      L       + I G+ D    R     N  L   R
Sbjct: 75  DRIYFDLDSYQVSPEAYPRLDAQAAWLQRYPQVQVRIEGNADE---RGTREYNLALGARR 131

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           A S    L+  GV   RI  IS F   R     A++   + NR
Sbjct: 132 AESIRNYLIDRGVPAGRIDTIS-FGKERPIAQGANEDAWARNR 173


>gi|163755600|ref|ZP_02162719.1| elongation factor P [Kordia algicida OT-1]
 gi|161324513|gb|EDP95843.1| elongation factor P [Kordia algicida OT-1]
          Length = 281

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                I +   +     H T+ + I GHTD++       + W     RA S     +  G
Sbjct: 190 LNAYAIELKNYLA---KHPTKHVEIIGHTDSN--GEAEANKW-FGQQRAKSVMNYFVSQG 243

Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           ++ ++++ IS          +        NRRI+I V +
Sbjct: 244 IAAEKLT-ISSKGETDPIAPNTTKEGQRLNRRIEINVTN 281


>gi|45758069|gb|AAO85793.1| heat-modifiable outer membrane protein [Mannheimia glucosida]
 gi|45758071|gb|AAO85794.1| heat-modifiable outer membrane protein [Mannheimia glucosida]
          Length = 367

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L      +++       I + G+TD          N +LS  RA
Sbjct: 247 LFDFGKSSLKPAAATSLDAAHAEISNLGLANPAIQVNGYTDRI---GKEASNLKLSQRRA 303

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 304 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 362

Query: 342 Q 342
           +
Sbjct: 363 K 363


>gi|258626845|ref|ZP_05721652.1| peptidoglycan-associated lipoprotein [Vibrio mimicus VM603]
 gi|262165947|ref|ZP_06033684.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio mimicus
           VM223]
 gi|262171200|ref|ZP_06038878.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio mimicus
           MB-451]
 gi|258580892|gb|EEW05834.1| peptidoglycan-associated lipoprotein [Vibrio mimicus VM603]
 gi|261892276|gb|EEY38262.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio mimicus
           MB-451]
 gi|262025663|gb|EEY44331.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio mimicus
           VM223]
          Length = 173

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 54  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLKVTIEGHADE-- 111

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 112 -RGTPEYNIALGERRAQAVAKYLEALGVQSGQLSIVS-YGEEKPLVLGQSEDAYAKNRR 168


>gi|71282605|ref|YP_268470.1| peptidoglycan-associated lipoprotein [Colwellia psychrerythraea
           34H]
 gi|71148345|gb|AAZ28818.1| peptidoglycan-associated lipoprotein [Colwellia psychrerythraea
           34H]
          Length = 184

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 33/181 (18%)

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
           D     D    I K            ++ A KR   +++  ++    L+ L +++I+   
Sbjct: 29  DEQSQVDTNAQITKNAEDAQKAQEAVQVTAAKRAAEIEEQKRQ---ELAQLRSEHII--- 82

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274
                                FD   S    +   +L    + L  +    + I GH D 
Sbjct: 83  --------------------YFDFDVSNVNDQFSAILDAHAKFLNANSDVKVLIEGHADE 122

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANR 332
              R     N  L   RA S    L   GV+  +++ +S +   +  +     N+   NR
Sbjct: 123 ---RGTPEYNIALGERRAKSVVTYLENMGVAAGQLTVVS-YGEEKPMVKDRSENAFSKNR 178

Query: 333 R 333
           R
Sbjct: 179 R 179


>gi|30248243|ref|NP_840313.1| outer membrane protein [Nitrosomonas europaea ATCC 19718]
 gi|30180128|emb|CAD84130.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 171

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++      L  +T   + ++G+TD    R     N  L   RA S 
Sbjct: 67  FDFDSYTVKSEYRDLVLAHAAYLRDNTNAQVLLQGNTDE---RGSREYNLALGQRRANSV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
             +L+ SG  + ++  +S G    R   + +   + NRR DIL
Sbjct: 124 KDILLLSGARDQQVEAVSLGEEKPRALGSDESSWAENRRTDIL 166


>gi|330960958|gb|EGH61218.1| OmpA family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 447

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    L+++ + L       + +++ G  DA   P R        LS  R
Sbjct: 346 FAQGSARLDNKAQQDLKRVVDYLKANDRLDQHVTLVGFGDAKSDPARAAL-----LSRLR 400

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           A +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 401 AMAVRRELLKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447


>gi|269138621|ref|YP_003295321.1| outer membrane protein A [Edwardsiella tarda EIB202]
 gi|267984281|gb|ACY84110.1| outer membrane protein A [Edwardsiella tarda EIB202]
 gi|304558635|gb|ADM41299.1| Outer membrane protein A precursor [Edwardsiella tarda FL6-60]
          Length = 351

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 223 KSDVLFNFNKYTLKAEGRQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGSDQY-NLKLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA +    L+  G+  D+I+   G         S      P  +  N     RR+ I 
Sbjct: 280 KQRAQTVVDYLVSKGIPADKIAA-RGMGKADPVTGSTCDNVKPRAALINCLAPDRRVVIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|253720368|gb|ACT33424.1| outer membrane protein A precursor [Edwardsiella tarda]
          Length = 351

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 223 KSDVLFNFNKYTLKAEGRQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGSDQY-NLKLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA +    L+  G+  D+I+   G         S      P  +  N     RR+ I 
Sbjct: 280 KQRAQTVVDYLVSKGIPADKIAA-RGMGKADPVTGSTCDNVKPRAALINCLAPDRRVVIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|239758178|gb|ACN65406.2| outer membrane protein A precursor [Edwardsiella tarda]
          Length = 351

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 223 KSDVLFNFNKYTLKAEGRQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGSDQY-NLKLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA +    L+  G+  D+I+   G         S      P  +  N     RR+ I 
Sbjct: 280 KQRAQTVVDYLVSKGIPADKIAA-RGMGKADPVTGSTCDNVKPRAALINCLAPDRRVVIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|145688456|gb|ABP88969.1| outer membrane protein A [Edwardsiella tarda]
          Length = 351

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 223 KSDVLFNFNKYTLKAEGRQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGSDQY-NLKLS 279

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA +    L+  G+  D+I+   G         S      P  +  N     RR+ I 
Sbjct: 280 KQRAQTVVDYLVSKGIPADKIAA-RGMGKADPVTGSTCDNVKPRAALINCLAPDRRVVIE 338

Query: 338 VE 339
           V+
Sbjct: 339 VK 340


>gi|84623210|ref|YP_450582.1| outer membrane protein P6 precursor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367150|dbj|BAE68308.1| outer membrane protein P6 precursor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 172

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168


>gi|289803197|ref|ZP_06533826.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 128

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 28  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 84

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 85  KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 123


>gi|254457971|ref|ZP_05071398.1| putative membrane protein [Campylobacterales bacterium GD 1]
 gi|207085364|gb|EDZ62649.1| putative membrane protein [Campylobacterales bacterium GD 1]
          Length = 393

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 116/364 (31%), Gaps = 65/364 (17%)

Query: 33  WKIVYADFMTVLMAFFLVM--------WIINATDDDTKKAIEQYFNPFG---KNLMTASK 81
           W I YAD M  L+  F+++         ++ +     +  +E+  +        L    K
Sbjct: 13  W-ISYADLMAGLLFVFILVVGAIVVKTLLMQSDLQTIRLNLEKEKSALELSESQLFEKKK 71

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN----------------QKKQYQ 125
            + +  +  + S +  + LS+   + K+  D      +                +K+   
Sbjct: 72  KLRELVSKLQASREENMRLSMQISMLKSETDELKNEVSILNLDIKTKASKLTLSEKEMQL 131

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGK-DLCKSTDLEKSINKEENYFLPPLSKEKIL 184
             E  +    ++    +  + L ++ E  K ++ +     +S N         +      
Sbjct: 132 LKELLLENEEDANMLRYKIDILHKEVEGTKTEITQLQSFVQSANARHELDSSFIKIRDEE 191

Query: 185 AMKRKKRL----QDLAKKISSTLSGLVADNIVKGVLFETTRT-----GILISIIDQRNTP 235
             + +K L    +D  + I       +    + G+     +      G  I I  Q    
Sbjct: 192 IAQLEKALLLKSRDYQRVIEDLNITKIKIKNLTGIKISVVQRLKKKLGNSIEIDPQTGAL 251

Query: 236 ------MFDKSSSIPLPETIVVLQKIG----------EVLAHSTEVISIRGHTDASPFRN 279
                 +F +  +   P     L +I             +    ++I+I GHT++     
Sbjct: 252 RFSSNILFTQGEAELKPSAKKELSRILGKYIDVLLNDPKMRRYVDLITIEGHTNSD---G 308

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDR-----ISKISG--FAHHRLKIASDPMNSANR 332
               N  LS  RA +  + L       +R         SG  FA   L         A+R
Sbjct: 309 SYLFNLDLSQRRALAVMEFLYTQ-YPNNRELFKKYLSASGRSFAEPILDANKKEDKDASR 367

Query: 333 RIDI 336
           RI+I
Sbjct: 368 RIEI 371


>gi|229523853|ref|ZP_04413258.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae bv. albensis VL426]
 gi|229337434|gb|EEO02451.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           cholerae bv. albensis VL426]
          Length = 172

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    ++I GH D   
Sbjct: 53  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADE-- 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   ++S +S +   +  +   S+   + NRR
Sbjct: 111 -RGTPEHNIALGERRAQAVAKYLEALGVQAGQLSIVS-YGEEKPLVLGQSEEAYAKNRR 167


>gi|56460901|ref|YP_156182.1| Sodium-type flagellar protein motY precursor [Idiomarina loihiensis
           L2TR]
 gi|56179911|gb|AAV82633.1| Sodium-type flagellar protein motY precursor [Idiomarina loihiensis
           L2TR]
          Length = 298

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +  S      +   L++I + L         + +  +TD+         N  L+  RA  
Sbjct: 190 EADSEKLTLSSQRKLKQISDYL-QVDNELELVLVDAYTDSL---GARGPNQELTEQRAKE 245

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             Q  ++ G+  +RI  ++     R   ++D       NRR+ I+   +
Sbjct: 246 IQQFFVERGIDAERIKTVA-HGEDRPVKSNDNEINRQINRRV-IVQLTK 292


>gi|329901809|ref|ZP_08272908.1| outer membrane protein, OmpA family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549018|gb|EGF33629.1| outer membrane protein, OmpA family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 396

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S      +  L   I    A +   ++I G+TD       A +N  LS  RA +A
Sbjct: 285 FAFGRSTLTAAGMQQLDALIISARAGNYSAVAITGYTDQI---GSAAENLALSQARARTA 341

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----------ASDPMNSANRRIDILVED 340
            Q ++  G+  DR    +G     LK+           A     + NRR+++ +  
Sbjct: 342 RQYMIAHGL-TDRAITATGAGATNLKVELAQCSGKTGAALQACLADNRRVEVTLIP 396


>gi|149185390|ref|ZP_01863706.1| peptidoglycan-associated protein [Erythrobacter sp. SD-21]
 gi|148830610|gb|EDL49045.1| peptidoglycan-associated protein [Erythrobacter sp. SD-21]
          Length = 359

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   PE   +L   +          + + GHTD       A+ N  L+  R  S
Sbjct: 252 FFNWDESEITPEAATILDNAVSAYANCGMASVMLAGHTDT---SGSAQYNMGLAERRNSS 308

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G+ + RIS    F  ++L++ +        NRR+++
Sbjct: 309 VRDYLSARGIPDGRISS-EAFGENQLRVPTADGVRELQNRRVEV 351


>gi|113868784|ref|YP_727273.1| outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Ralstonia eutropha H16]
 gi|113527560|emb|CAJ93905.1| outer membrane protein or related peptidoglycan-associated
           (lipo)protein [Ralstonia eutropha H16]
          Length = 168

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +L +  + L  +    I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYTVKSDYQGMLGEHAKYLGSNKGRKILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            + L   GV + ++  +S G    +     +   + NRR DI
Sbjct: 125 RRSLASMGVPDGQMEAVSLGKEKPKATGHDEASWAENRRADI 166


>gi|52425200|ref|YP_088337.1| SmpA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307252|gb|AAU37752.1| SmpA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 272

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD            V+  + E L  S    + + G TD          N  LS  RA  
Sbjct: 141 LFDFDKDSLTERGKKVVDSVAEQLKASKAKTVKVAGFTDRL---GSEAYNLELSQRRANQ 197

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDI 336
             + L+   V  D I  I G+   +       + +          NRR++I
Sbjct: 198 VKEWLIARDVKAD-IDAI-GYGSAQQIKPCTGLKAGKALRDCLRPNRRVEI 246


>gi|78048827|ref|YP_365002.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294626855|ref|ZP_06705447.1| PAL family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665412|ref|ZP_06730700.1| PAL family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325929356|ref|ZP_08190486.1| peptidoglycan-associated lipoprotein [Xanthomonas perforans 91-118]
 gi|78037257|emb|CAJ25002.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292598869|gb|EFF43014.1| PAL family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604823|gb|EFF48186.1| PAL family outer membrane lipoprotein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325540268|gb|EGD11880.1| peptidoglycan-associated lipoprotein [Xanthomonas perforans 91-118]
          Length = 172

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 69  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168


>gi|329847556|ref|ZP_08262584.1| ompA family protein [Asticcacaulis biprosthecum C19]
 gi|328842619|gb|EGF92188.1| ompA family protein [Asticcacaulis biprosthecum C19]
          Length = 438

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+ P  + + V+    +         +++ GH D       A  N +LS +RA   
Sbjct: 336 FPFNSATPTADGLAVISAAAQQARSQPGAPVTVTGHADT---SGSAPYNIQLSQNRARMV 392

Query: 296 YQVLMKSGVSEDRISKI----SGFAHHRLKIASDPMNSANRRIDILV 338
              L++ GV     S +     G A   +   +   N+ NRR  I +
Sbjct: 393 ADGLIQMGVPA---SAVNTDWKGEAQPAVPTGNGVKNAENRRATISI 436


>gi|167950585|ref|ZP_02537659.1| OmpA/MotB [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 83

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
            R  A  N  LS  RA +    L   GV   RI ++ G      + + +       NRR+
Sbjct: 4   IRGTAEYNQHLSERRAENVAYFLEDQGVPAARI-RVEGRGRSEPRASHETEGDRQLNRRV 62

Query: 335 DILVEDRQ 342
           +I V   +
Sbjct: 63  EIYVRPIK 70


>gi|188584474|ref|YP_001927919.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179347972|gb|ACB83384.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 718

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  +      EV  I G+TDA        DN  LS  R
Sbjct: 597 FDTGSFTVTPDQAKRLSTIAEAINRTIKDNPQEVFLIEGYTDAV---GSDIDNLSLSDRR 653

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL ++           G+    LK+ +   N  NRR+ +
Sbjct: 654 AQSVAAVLTQNFQVPPENLTTQGYGEQYLKVNTQEANRENRRVTV 698


>gi|110640949|ref|YP_668677.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 536]
 gi|117622932|ref|YP_851845.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli APEC O1]
 gi|215485763|ref|YP_002328194.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218557654|ref|YP_002390567.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli S88]
 gi|218688532|ref|YP_002396744.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli ED1a]
 gi|227884292|ref|ZP_04002097.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 83972]
 gi|300992344|ref|ZP_07179867.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 200-1]
 gi|300993167|ref|ZP_07180250.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 45-1]
 gi|301051339|ref|ZP_07198162.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 185-1]
 gi|306812852|ref|ZP_07447045.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli NC101]
 gi|312965177|ref|ZP_07779414.1| peptidoglycan-associated lipoprotein [Escherichia coli 2362-75]
 gi|331656760|ref|ZP_08357722.1| peptidoglycan-associated lipoprotein [Escherichia coli TA206]
 gi|331682171|ref|ZP_08382793.1| peptidoglycan-associated lipoprotein [Escherichia coli H299]
 gi|110342541|gb|ABG68778.1| peptidoglycan-associated lipoprotein precursor [Escherichia coli
           536]
 gi|115512056|gb|ABJ00131.1| peptidoglycan-associated lipoprotein precursor [Escherichia coli
           APEC O1]
 gi|215263835|emb|CAS08173.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218364423|emb|CAR02103.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli S88]
 gi|218426096|emb|CAR06914.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli ED1a]
 gi|222032477|emb|CAP75216.1| Peptidoglycan-associated lipoprotein [Escherichia coli LF82]
 gi|227839044|gb|EEJ49510.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 83972]
 gi|281177884|dbj|BAI54214.1| peptidoglycan-associated lipoprotein [Escherichia coli SE15]
 gi|294493682|gb|ADE92438.1| peptidoglycan-associated lipoprotein [Escherichia coli IHE3034]
 gi|300297001|gb|EFJ53386.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 185-1]
 gi|300305361|gb|EFJ59881.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 200-1]
 gi|300406697|gb|EFJ90235.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 45-1]
 gi|305853615|gb|EFM54054.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli NC101]
 gi|307552592|gb|ADN45367.1| peptidoglycan-associated lipoprotein [Escherichia coli ABU 83972]
 gi|307627845|gb|ADN72149.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli UM146]
 gi|312290268|gb|EFR18151.1| peptidoglycan-associated lipoprotein [Escherichia coli 2362-75]
 gi|312945265|gb|ADR26092.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315287144|gb|EFU46556.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 110-3]
 gi|315292655|gb|EFU52007.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 153-1]
 gi|315299256|gb|EFU58508.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 16-3]
 gi|323191086|gb|EFZ76351.1| peptidoglycan-associated lipoprotein [Escherichia coli RN587/1]
 gi|323953133|gb|EGB49000.1| peptidoglycan lipoprotein [Escherichia coli H252]
 gi|323958485|gb|EGB54191.1| peptidoglycan lipoprotein [Escherichia coli H263]
 gi|324009565|gb|EGB78784.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 57-2]
 gi|324010464|gb|EGB79683.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 60-1]
 gi|330910492|gb|EGH39002.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli AA86]
 gi|331055008|gb|EGI27017.1| peptidoglycan-associated lipoprotein [Escherichia coli TA206]
 gi|331080595|gb|EGI51771.1| peptidoglycan-associated lipoprotein [Escherichia coli H299]
          Length = 173

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168


>gi|61655687|gb|AAX49330.1| PlpD [Bibersteinia trehalosi]
          Length = 219

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
               +FD        +   V+  +   L  S  + + I GHTD     ++A  N  LS  
Sbjct: 116 EGDFLFDFDKDTLTAKGKEVVDNVAAQLKSSGAQQVKIEGHTD--RLGSVAY-NLDLSQR 172

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHH 318
           RA      L + GV+ + ++ +  G AH 
Sbjct: 173 RANMVKARLQQQGVTAE-MTAVGLGKAHQ 200


>gi|302038649|ref|YP_003798971.1| peptidoglycan-associated lipoprotein pal [Candidatus Nitrospira
           defluvii]
 gi|300606713|emb|CBK43046.1| Peptidoglycan-associated lipoprotein Pal (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 250

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 73/251 (29%), Gaps = 28/251 (11%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
           S+  I    D   T+  +    G              +   + +       +        
Sbjct: 25  SKKSIQSGGDAQSTERGMAKSGGPAPSAMGSTGGVGGMEPPAATFPDLSLSSKPDDLETG 84

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G     S    K+ ++E       +  +   +    ++++D+ ++ +   +         
Sbjct: 85  GLRGFDSVSGGKAPSEERLGGGGTMLAKVEPSESTARQIEDIRREQAKEQAASA------ 138

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272
                    G+            F   S     E    L +  + +  +    + I GH 
Sbjct: 139 -------EAGLR--------DVFFGYDSWTITEEGRQSLTQDAQWIKANAGALVKIEGHC 183

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330
           D    R     N  L   RA +    L++ GV  +R+  +  +   R      ++     
Sbjct: 184 DE---RGTLAYNLVLGEKRAKAVRNYLVELGVGANRL-AVVSYGKERPFCNERNESCYQQ 239

Query: 331 NRRIDILVEDR 341
           NRR  ++V  +
Sbjct: 240 NRRGHVVVRSK 250


>gi|261252511|ref|ZP_05945084.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           orientalis CIP 102891]
 gi|260935902|gb|EEX91891.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           orientalis CIP 102891]
          Length = 176

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASP 276
           + T   +    + +  T  F   +S    +   +L      L+ +    ++I GH D   
Sbjct: 57  QLTEQELKEQALRETQTIYFAFDNSTIAGDYEEMLAAHAAYLSKNPALEVTIEGHADE-- 114

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV  D+IS +S +   +  +   S+ + + NRR
Sbjct: 115 -RGTPEYNIALGERRANAVAKYLQALGVQADQISIVS-YGEEKPLLLGQSEDVYAKNRR 171


>gi|323188374|gb|EFZ73665.1| ompA family protein [Escherichia coli RN587/1]
          Length = 127

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|148475218|dbj|BAF63175.1| major outer membrane protein ompAII [Aeromonas veronii]
          Length = 332

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 212 LFAFGKSTLKPEGVAALNTLYQQIVDVQPKDGSAVVVGYTD--RIGSDAY-NQKLSEARA 268

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDILV 338
            +    L+  G+   ++  I G         +   +           + +RR+++ V
Sbjct: 269 RTVADFLVGKGLPAGKV-AIEGRGEANPVTGTQCNSVKGKAQLISCLAPDRRVEVRV 324


>gi|126046408|gb|ABN73092.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIGSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|94676590|ref|YP_588572.1| peptidoglycan-associated lipoprotein precursor [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219740|gb|ABF13899.1| peptidoglycan-associated lipoprotein precursor [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 211

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           +I  +N   F           I +L +  + L  +    + I GH D    R     N  
Sbjct: 102 MISDQNVIYFTLDKYKIKSCFIPMLDEHAQFLRSNPSAQVIIEGHADE---RGTPEYNIA 158

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
           L   RA +  + L   GV  ++I  IS +   +  +   +    + NRR  ++
Sbjct: 159 LGERRANAVKRYLQSQGVCSEQIKIIS-YGKEKPAVFGHNKAAYAKNRRTVLV 210


>gi|28901295|ref|NP_800950.1| hypothetical protein VPA1440 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153835951|ref|ZP_01988618.1| OmpA family protein [Vibrio parahaemolyticus AQ3810]
 gi|260362852|ref|ZP_05775721.1| OmpA family protein [Vibrio parahaemolyticus K5030]
 gi|260880140|ref|ZP_05892495.1| OmpA family protein [Vibrio parahaemolyticus AN-5034]
 gi|260895257|ref|ZP_05903753.1| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|260900609|ref|ZP_05909004.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|28809808|dbj|BAC62783.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750705|gb|EDM61450.1| OmpA family protein [Vibrio parahaemolyticus AQ3810]
 gi|308085641|gb|EFO35336.1| OmpA family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091737|gb|EFO41432.1| OmpA family protein [Vibrio parahaemolyticus AN-5034]
 gi|308107011|gb|EFO44551.1| OmpA family protein [Vibrio parahaemolyticus AQ4037]
 gi|308112285|gb|EFO49825.1| OmpA family protein [Vibrio parahaemolyticus K5030]
          Length = 301

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S    E +  L    E L      I + GHTD      +   N +L+  RA 
Sbjct: 188 TPHFDFDQSELKAEDLTQLDDFIEQLQGLEGSILVAGHTDQV---GLLSYNEKLAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDP--MNSANRR 333
           +  + L K+ +   R+  ++  F   +  I       N+ NRR
Sbjct: 245 TVVEYL-KTKLDASRLVWEVKAFGELQPVINQTTSEANALNRR 286



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           L      +   +  I+I GHTD   ++     N  LSL RA S    L +         +
Sbjct: 77  LDAFIRDIQGLSGRITIVGHTD---YKGSNEYNDALSLRRAQSVAAYLKQQLDPTFYDWE 133

Query: 312 ISGFAHHRL--KIASDPMNSANRR 333
           I  F   +      SD   + NRR
Sbjct: 134 IKHFGETQPLKLDTSDQARAENRR 157


>gi|157148115|ref|YP_001455434.1| putative outer membrane lipoprotein [Citrobacter koseri ATCC
           BAA-895]
 gi|157085320|gb|ABV14998.1| hypothetical protein CKO_03925 [Citrobacter koseri ATCC BAA-895]
          Length = 160

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +FDK+     PE+   ++++   LA +      + GHTD          N  LSL R
Sbjct: 52  DNILFDKNDYKLRPESQQQIREMASRLAATGLKHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        +            G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAEGANIPRSNLTTQGLGKKHPVASNQSAKGRAENRRVAVVI 157


>gi|30314420|gb|AAP15419.1| outer membrane lipoprotein precursor [Burkholderia multivorans]
          Length = 149

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRALALLGVADSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 146


>gi|254361457|ref|ZP_04977597.1| outer membrane protein OmpA [Mannheimia haemolytica PHL213]
 gi|153092967|gb|EDN73993.1| outer membrane protein OmpA [Mannheimia haemolytica PHL213]
          Length = 230

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   S   P     L     E+  L  +   I + G+TD          N +LS  RA
Sbjct: 110 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 166

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    ++  G +   ++ + G+           D +            +RR++I V+  
Sbjct: 167 ETVANYIVSKGTNPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 225

Query: 342 Q 342
           +
Sbjct: 226 K 226


>gi|94497803|ref|ZP_01304369.1| probable outer membrane protein [Sphingomonas sp. SKA58]
 gi|94422692|gb|EAT07727.1| probable outer membrane protein [Sphingomonas sp. SKA58]
          Length = 215

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 243 IPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
                    L   I      +   I++RGH+D+   R    DN   S  RA      L++
Sbjct: 88  KLDDAARQALDALIATPAMKAGGPITLRGHSDS---RGADGDNKVASAKRAELVRDYLVE 144

Query: 302 SGVSEDRISKISGFAHHRLKIAS-------DPMN-SANRRIDILV 338
            GV++DRI+ I+     R    +       DP   + NRR+D+ V
Sbjct: 145 KGVAKDRITLIA-IGEGRPVAPNVREDGSDDPEGQAKNRRVDVTV 188


>gi|261492650|ref|ZP_05989203.1| lipoprotein Plp4 [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494601|ref|ZP_05991082.1| lipoprotein Plp4 [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309713|gb|EEY10935.1| lipoprotein Plp4 [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311809|gb|EEY12959.1| lipoprotein Plp4 [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 268

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 127 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 183

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPM------NSANRRIDI 336
           + +    L++ GV   +I  +  G A+       +           NRR++I
Sbjct: 184 SNTVKARLVQQGV-TAQIEAVGYGKANQVKACDGETGQELKDCLRPNRRVEI 234


>gi|167626141|ref|YP_001676435.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167356163|gb|ABZ78776.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 304

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282
            I +       +F  SSS+        L  +   L   +    I + GH DA        
Sbjct: 178 RIEL-------LFAPSSSLLNNSHEQDLYAVYRYLQADSSIVEILVDGHADA---SGDHL 227

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            N  LS +RA      L++ GVS  ++ +           +++       NRR+ +
Sbjct: 228 ANLVLSKERADEVVSRLIELGVSA-KMIQTRHHGTRAPVASNNNTEGRELNRRVTL 282


>gi|58581292|ref|YP_200308.1| outer membrane protein P6 precursor [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425886|gb|AAW74923.1| outer membrane protein P6 precursor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 181

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 78  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 135 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 177


>gi|297560201|ref|YP_003679175.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844649|gb|ADH66669.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1124

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+    +    L  + E++     +   + I GHTD       A+ N  LS  RA 
Sbjct: 155 FGVGSAELTEQMRDDLAPVAEMIDSYGDTETPVRITGHTDP---SGNAQTNQELSERRAQ 211

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +    L +    E    ++ G    + +   +   +A RR ++
Sbjct: 212 AVADHLDEVLGEEAPEMEVEGVGSEQPR---EGGAAAQRRAEV 251


>gi|254299066|ref|ZP_04966516.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 406e]
 gi|157809033|gb|EDO86203.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 406e]
          Length = 169

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVQDQYQALLQQHAQYLKSHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G          +   + NRR D++
Sbjct: 124 RRALSLLGVGDAQMEAVSLGKEKPVALGHDEASWAQNRRADLV 166


>gi|148862|gb|AAA24941.1| 31 kDa antigen [Histophilus somni]
          Length = 273

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        +    +  +   L   +   I I G TD          N  LS  RA  
Sbjct: 141 LFDFDQDTLTSKGEEAVDNVAMQLEAFSAKEIKIVGFTDRL---GTDSYNLDLSQRRADR 197

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
             + L++ G++ D I+   G+   +   A + + +         NRR++I
Sbjct: 198 VKERLIEKGLNIDIIA--IGYGKTQQIKACNDVPAKELKDCLRPNRRVEI 245


>gi|113460985|ref|YP_719052.1| outer membrane protein [Haemophilus somnus 129PT]
 gi|170717551|ref|YP_001784639.1| SmpA/OmlA domain-containing protein [Haemophilus somnus 2336]
 gi|112823028|gb|ABI25117.1| outer membrane protein [Haemophilus somnus 129PT]
 gi|168825680|gb|ACA31051.1| SmpA/OmlA domain protein [Haemophilus somnus 2336]
          Length = 273

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD        +    +  +   L   +   I I G TD          N  LS  RA  
Sbjct: 141 LFDFDQDTLTSKGEEAVDNVAMQLEAFSAKEIKIVGFTDRL---GTDSYNLDLSQRRADR 197

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336
             + L++ G++ D I+   G+   +   A + + +         NRR++I
Sbjct: 198 VKERLIEKGLNIDIIA--IGYGKTQQIKACNDVPAKELKDCLRPNRRVEI 245


>gi|332291918|ref|YP_004430527.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170004|gb|AEE19259.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 306

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292
           F+   +         LQ IG++  +  +     I++ GHTD+         N RL L+RA
Sbjct: 203 FNYGEASVTLSEKKRLQ-IGDISCYLDKKEGATITVEGHTDSQ---GSLTTNDRLGLERA 258

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
             A   L  +G+ E +I  +S          +D       NRR  I +
Sbjct: 259 EFAKAYLANNGIPESKIKTVS-KGERSPIETNDTEEGHNKNRRAVITL 305


>gi|30314414|gb|AAP15416.1| outer membrane lipoprotein precursor [Burkholderia multivorans ATCC
           BAA-247]
          Length = 149

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRALALLGVADSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 146


>gi|53720375|ref|YP_109361.1| OmpA family lipoprotein [Burkholderia pseudomallei K96243]
 gi|53725632|ref|YP_103661.1| OmpA family outer membrane protein [Burkholderia mallei ATCC 23344]
 gi|67643927|ref|ZP_00442670.1| outer membrane lipoprotein [Burkholderia mallei GB8 horse 4]
 gi|76810557|ref|YP_334629.1| OmpA family outer membrane protein [Burkholderia pseudomallei
           1710b]
 gi|121601549|ref|YP_992166.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei SAVP1]
 gi|124383503|ref|YP_001028612.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei NCTC 10229]
 gi|126440722|ref|YP_001060216.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 668]
 gi|126451181|ref|YP_001081487.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei NCTC 10247]
 gi|126454443|ref|YP_001067480.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1106a]
 gi|134280344|ref|ZP_01767055.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 305]
 gi|166998277|ref|ZP_02264137.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei PRL-20]
 gi|167720991|ref|ZP_02404227.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei DM98]
 gi|167739948|ref|ZP_02412722.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 14]
 gi|167817185|ref|ZP_02448865.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 91]
 gi|167825598|ref|ZP_02457069.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 9]
 gi|167847082|ref|ZP_02472590.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei B7210]
 gi|167895666|ref|ZP_02483068.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 7894]
 gi|167904059|ref|ZP_02491264.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912316|ref|ZP_02499407.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 112]
 gi|167920273|ref|ZP_02507364.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei BCC215]
 gi|217420588|ref|ZP_03452093.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 576]
 gi|226194168|ref|ZP_03789767.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813606|ref|YP_002898057.1| outer membrane lipoprotein [Burkholderia pseudomallei MSHR346]
 gi|242315175|ref|ZP_04814191.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1106b]
 gi|254175608|ref|ZP_04882268.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei ATCC 10399]
 gi|254180823|ref|ZP_04887421.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1655]
 gi|254191661|ref|ZP_04898164.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194825|ref|ZP_04901255.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei S13]
 gi|254202358|ref|ZP_04908721.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei FMH]
 gi|254207692|ref|ZP_04914042.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei JHU]
 gi|254258391|ref|ZP_04949445.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1710a]
 gi|254356406|ref|ZP_04972682.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei 2002721280]
 gi|52210789|emb|CAH36773.1| putative OmpA family lipoprotein [Burkholderia pseudomallei K96243]
 gi|52429055|gb|AAU49648.1| outer membrane protein, OmpA family [Burkholderia mallei ATCC
           23344]
 gi|76580010|gb|ABA49485.1| outer membrane protein, OmpA family [Burkholderia pseudomallei
           1710b]
 gi|121230359|gb|ABM52877.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei SAVP1]
 gi|124291523|gb|ABN00792.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei NCTC 10229]
 gi|126220215|gb|ABN83721.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 668]
 gi|126228085|gb|ABN91625.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1106a]
 gi|126244051|gb|ABO07144.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei NCTC 10247]
 gi|134248351|gb|EBA48434.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 305]
 gi|147746605|gb|EDK53682.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei FMH]
 gi|147751586|gb|EDK58653.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei JHU]
 gi|148025403|gb|EDK83557.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei 2002721280]
 gi|157939332|gb|EDO95002.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160696652|gb|EDP86622.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei ATCC 10399]
 gi|169651574|gb|EDS84267.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei S13]
 gi|184211362|gb|EDU08405.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1655]
 gi|217396000|gb|EEC36017.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 576]
 gi|225933633|gb|EEH29621.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237502905|gb|ACQ95223.1| outer membrane lipoprotein [Burkholderia pseudomallei MSHR346]
 gi|238525396|gb|EEP88824.1| outer membrane lipoprotein [Burkholderia mallei GB8 horse 4]
 gi|242138414|gb|EES24816.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1106b]
 gi|243065357|gb|EES47543.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           mallei PRL-20]
 gi|254217080|gb|EET06464.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           pseudomallei 1710a]
          Length = 170

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVQDQYQALLQQHAQYLKSHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G          +   + NRR D++
Sbjct: 125 RRALSLLGVGDAQMEAVSLGKEKPVALGHDEASWAQNRRADLV 167


>gi|238763376|ref|ZP_04624340.1| Outer membrane protein A [Yersinia kristensenii ATCC 33638]
 gi|238698475|gb|EEP91228.1| Outer membrane protein A [Yersinia kristensenii ATCC 33638]
          Length = 358

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F  + S    E    L ++   L+        + + G  D          N  LS
Sbjct: 230 KSDVLFAFNKSTLKAEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 286

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337
             RA S    L+  G+  D+I+   G         +      P  +       +RR++I 
Sbjct: 287 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 345

Query: 338 VE 339
           V+
Sbjct: 346 VK 347


>gi|71906334|ref|YP_283921.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71845955|gb|AAZ45451.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 165

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +     E   +LQ+  E+L    +  +S+ G+TD    R  +  N  L   RA + 
Sbjct: 62  FDYDNFTIKTEYNALLQQQAELLKRYPKLGVSLEGNTDE---RGSSEYNLSLGQKRAEAV 118

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            + L   GV E ++  +S G    +     +   S NRR+D
Sbjct: 119 RKALTILGVPEAKVEAVSFGKEKPKADCPEEKCWSQNRRVD 159


>gi|329755862|gb|AEC04328.1| outer membrane protein A [Pasteurella multocida]
          Length = 348

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L   GV+++ IS  +G         +
Sbjct: 292 ANYLEAKGVAQNAISA-TGHGEANPVTGN 319


>gi|194469803|ref|ZP_03075787.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197251258|ref|YP_002145710.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205358387|ref|ZP_02655691.2| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|238911682|ref|ZP_04655519.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194456167|gb|EDX45006.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197214961|gb|ACH52358.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205334829|gb|EDZ21593.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 174

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169


>gi|320183086|gb|EFW57948.1| Integral membrane protein YfiB [Shigella flexneri CDC 796-83]
 gi|323167728|gb|EFZ53423.1| ompA family protein [Shigella sonnei 53G]
 gi|332092191|gb|EGI97269.1| ompA family protein [Shigella boydii 3594-74]
 gi|332765583|gb|EGJ95796.1| ompA family protein [Shigella flexneri 2930-71]
 gi|333000803|gb|EGK20377.1| ompA family protein [Shigella flexneri K-218]
          Length = 127

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|161504089|ref|YP_001571201.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865436|gb|ABX22059.1| hypothetical protein SARI_02187 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 174

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169


>gi|114776299|ref|ZP_01451344.1| OmpA family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553129|gb|EAU55527.1| OmpA family protein [Mariprofundus ferrooxydans PV-1]
          Length = 167

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           N   F   SS         L      L  + +E I+I G+ D    R     N  L   R
Sbjct: 62  NAVYFAFDSSALDASARATLDGYAAWLNANNSENITIEGNCDE---RGSREYNLALGQRR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           A S    L  +G++  RI  +S F   R           + NRR DI+
Sbjct: 119 ADSVRDYLTANGIAAGRIDTVS-FGEERPVCKGTGEACWAQNRRGDIV 165


>gi|283784494|ref|YP_003364359.1| peptidoglycan-associated lipoprotein [Citrobacter rodentium ICC168]
 gi|282947948|emb|CBG87512.1| peptidoglycan-associated lipoprotein [Citrobacter rodentium ICC168]
          Length = 173

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168


>gi|313146790|ref|ZP_07808983.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135557|gb|EFR52917.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 369

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 267 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRAGF 324

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 325 ITAELEQRGIPAKRIIRVSKGGIADYTPVEAN 356


>gi|298483893|ref|ZP_07002064.1| outer membrane protein [Bacteroides sp. D22]
 gi|298269953|gb|EFI11543.1| outer membrane protein [Bacteroides sp. D22]
          Length = 480

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 378 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRAGF 435

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 436 ITAELEQRGIPAKRIIRVSKGGIADYTPVEAN 467


>gi|255009049|ref|ZP_05281175.1| putative outer membrane protein [Bacteroides fragilis 3_1_12]
          Length = 480

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 378 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRAGF 435

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 436 ITAELEQRGIPAKRIIRVSKGGIADYTPVEAN 467


>gi|288942645|ref|YP_003444885.1| hypothetical protein Alvin_2951 [Allochromatium vinosum DSM 180]
 gi|288898017|gb|ADC63853.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 243

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 32/182 (17%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            +  + +    +  + I + L     D++ +    E     + +   +     +FD++S+
Sbjct: 54  QVETEVRVTAAESRQAIYTALEREFRDDLPRW-NAELVERTLTLRFREPD--ILFDRNSA 110

Query: 243 IPLPETIVVLQKIGE-------VLAHSTEVISIRGHTDA-----SPFRNIARDNWRLSLD 290
              PE   +L                    I + GHT +     +   +    N  LS  
Sbjct: 111 RIKPEFEAILSDFLPRYVARLEPFRDVIREIRLEGHTSSEWNAGTAPLDAYFLNMELSQQ 170

Query: 291 RAYSAYQVLMKSGVS--------EDRISKISGFAHHRLKIASDPMNSAN----RRIDILV 338
           R  +  +     G+           R++ + G +  R     D     N    RR++  V
Sbjct: 171 RIQAVLRF--AYGLDRLKGEDWFRGRVAAV-GLSSSRPV--QDAQGRENPTASRRVEFSV 225

Query: 339 ED 340
             
Sbjct: 226 LT 227


>gi|224026661|ref|ZP_03645027.1| hypothetical protein BACCOPRO_03418 [Bacteroides coprophilus DSM
           18228]
 gi|237717911|ref|ZP_04548392.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|253567288|ref|ZP_04844737.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|256840266|ref|ZP_05545774.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|293369584|ref|ZP_06616162.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|294644301|ref|ZP_06722069.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294807206|ref|ZP_06766020.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|224019897|gb|EEF77895.1| hypothetical protein BACCOPRO_03418 [Bacteroides coprophilus DSM
           18228]
 gi|229452851|gb|EEO58642.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|251943857|gb|EES84385.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|256737538|gb|EEU50864.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|292635288|gb|EFF53802.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292640372|gb|EFF58622.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294445504|gb|EFG14157.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 480

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V    +  + + G  D+S   +   D+  LS+ RA  
Sbjct: 378 FFALNTTHLTDTSQRLNLDELARVAKKYSLSVRVTGAADSSTGTSSINDS--LSISRAGF 435

Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
               L + G+   RI ++S  G A +    A+
Sbjct: 436 ITAELEQRGIPAKRIIRVSKGGIADYTPVEAN 467


>gi|167837695|ref|ZP_02464578.1| outer membrane protein, OmpA family [Burkholderia thailandensis
           MSMB43]
          Length = 170

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVQDQYQSLLQQHAQYLKSHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G          +   + NRR D++
Sbjct: 125 RRALSLLGVGDAQMEAVSLGKEKPVALGHDEASWAQNRRADLV 167


>gi|163745826|ref|ZP_02153185.1| peptidoglycan-associated lipoprotein, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380571|gb|EDQ04981.1| peptidoglycan-associated lipoprotein, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 178

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S         L  ++  +  +S     I GH D          N  L   R
Sbjct: 67  DRVLFLVDQSTLTDVGRATLDGQVAWLQTNSDYQAVIEGHADEQ---GTREYNIALGGRR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333
           A +  + ++  G++  R+  IS      ++I SD    + NRR
Sbjct: 124 ANAVREYMISRGIAASRLKTISYGKERPIEICSDEACYAKNRR 166


>gi|4105267|gb|AAD02332.1| flagellar motor rotation protein MotB [Campylobacter jejuni]
          Length = 141

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 237 FDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F++ S+     +    L+++ E+  +      I IRG+TD S     +     L+  RA 
Sbjct: 17  FERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGYTDNSDSIIRSY---ELAYQRAE 73

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  +  ++ G +   I  I  +  +      +P    N R++I
Sbjct: 74  NVLKYFIEGGANLKNI-SIKSYGLNNPING-NPQALENNRVEI 114


>gi|332877635|ref|ZP_08445378.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684384|gb|EGJ57238.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 364

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 97/294 (32%), Gaps = 25/294 (8%)

Query: 64  AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123
            I +Y       +     G          +S   I  +        + +  +  T     
Sbjct: 78  VINEYRLVKAAAVSPTVVGTTSSTITSRTASNTAIARTASNTTIARTANPAVVRTATNTA 137

Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183
             +       +  +Q +      L + S   + L K   L  +        +   S    
Sbjct: 138 ITQRSVVPAAVVQTQTTAAIAQQLAQLSGTVEQLRKQQQLLLATLVANTGMVAAKSNTAP 197

Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM------- 236
            A   +         +++T +          V+   T TG+ I I  ++ + +       
Sbjct: 198 TAANAQATAVGTQATVATTTATTATSGYAPIVVQSVTATGVPIQISAEKRSELEQLLAAY 257

Query: 237 --------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
                   F  + +IPL     ++ ++  +L    E  I + G+  AS   + A +N  L
Sbjct: 258 GHKKALLYFANNKTIPLAYDPTIIDEMVTMLQAHPELSILLEGY--ASAVGSAAYNN-VL 314

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           S++RA +  Q+L   G+S +RI         +    + P  +  RR+++ V  R
Sbjct: 315 SMERAVAVAQILNAKGISNERILTAFKGIDPQ----ATPAQA--RRVELRVVIR 362


>gi|301165251|emb|CBW24822.1| putative outer membrane protein [Bacteroides fragilis 638R]
          Length = 381

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      F+    +    +   L ++ E+L    +    I G+TDA   +     N  LS
Sbjct: 260 DLLENIHFEFDRDVITATSERTLDRLAELLKSYPDSRFLITGYTDA---KGSDSYNLTLS 316

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
             RA   +  L+  GV   R+ K  G       I++   +
Sbjct: 317 ARRAEKVHAALIGRGVPA-RMIKWRGVGKRAAIISATAAD 355


>gi|295690965|ref|YP_003594658.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295432868|gb|ADG12040.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 386

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F     +  PE   V+Q+  +         I + GHTD          N RLS  RA + 
Sbjct: 284 FPFDQYVLTPEAQAVVQQAADYAKGGGATKIVVTGHTDT---SGSDAYNRRLSERRAKAV 340

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
              L+  GV+   +  +         +A+        NRR  + I
Sbjct: 341 ADGLVGMGVNATAL-AVDWKGESAPAVATGDGVKEPLNRRSTVSI 384


>gi|218129608|ref|ZP_03458412.1| hypothetical protein BACEGG_01185 [Bacteroides eggerthii DSM 20697]
 gi|217988338|gb|EEC54661.1| hypothetical protein BACEGG_01185 [Bacteroides eggerthii DSM 20697]
          Length = 496

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 236 MFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  +S    P  +V L ++  V       + + G  D++       +   LS  RA  
Sbjct: 385 FFELGTSHLTDPSQLVNLDELARVAKKYGLKVKVTGAADSATGTIGINN--ALSASRADY 442

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR--RIDIL 337
               L K G+S DR++K    G + +           ANR  R+++ 
Sbjct: 443 IASELNKRGLSPDRMTKTGEGGISDYAP-------TEANRHTRVELF 482


>gi|157146633|ref|YP_001453952.1| peptidoglycan-associated outer membrane lipoprotein [Citrobacter
           koseri ATCC BAA-895]
 gi|157083838|gb|ABV13516.1| hypothetical protein CKO_02399 [Citrobacter koseri ATCC BAA-895]
          Length = 172

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 72  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 128

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 129 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 167


>gi|117618219|ref|YP_855821.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559626|gb|ABK36574.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 333

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 213 LFAFGKSTLKPEGVAALNTLYQQIVDVQPKDGSAVVVGYTD--RIGSDAY-NLKLSEARA 269

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G+   ++  I G         +
Sbjct: 270 RTVADFLVGKGLPAGKV-AIEGRGEANPVTGT 300


>gi|26246711|ref|NP_752751.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli CFT073]
 gi|91209776|ref|YP_539762.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli UTI89]
 gi|237707296|ref|ZP_04537777.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           sp. 3_2_53FAA]
 gi|331645892|ref|ZP_08346995.1| peptidoglycan-associated lipoprotein [Escherichia coli M605]
 gi|26107110|gb|AAN79294.1|AE016757_198 Peptidoglycan-associated lipoprotein precursor [Escherichia coli
           CFT073]
 gi|91071350|gb|ABE06231.1| peptidoglycan-associated lipoprotein precursor [Escherichia coli
           UTI89]
 gi|226898506|gb|EEH84765.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           sp. 3_2_53FAA]
 gi|331044644|gb|EGI16771.1| peptidoglycan-associated lipoprotein [Escherichia coli M605]
          Length = 181

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 81  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 137

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 138 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 176


>gi|16759688|ref|NP_455305.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16764119|ref|NP_459734.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29142539|ref|NP_805881.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56414134|ref|YP_151209.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179323|ref|YP_215740.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615017|ref|YP_001588982.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167554283|ref|ZP_02348024.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167995342|ref|ZP_02576432.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168238899|ref|ZP_02663957.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168240607|ref|ZP_02665539.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264359|ref|ZP_02686332.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467688|ref|ZP_02701525.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820116|ref|ZP_02832116.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444000|ref|YP_002039990.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450609|ref|YP_002044783.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194735900|ref|YP_002113856.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197263376|ref|ZP_03163450.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197363056|ref|YP_002142693.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245566|ref|YP_002214719.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390868|ref|ZP_03217479.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929814|ref|ZP_03220835.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205352013|ref|YP_002225814.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856193|ref|YP_002242844.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213027105|ref|ZP_03341552.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213051768|ref|ZP_03344646.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213423403|ref|ZP_03356390.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213427708|ref|ZP_03360458.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213582020|ref|ZP_03363846.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213609989|ref|ZP_03369815.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213649745|ref|ZP_03379798.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213857528|ref|ZP_03384499.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289827212|ref|ZP_06545932.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25298548|pir||AI0592 peptidoglycan-associated lipoprotein precursor [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419259|gb|AAL19693.1| tol protein required for outer membrane integrity [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16501981|emb|CAD05211.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138170|gb|AAO69741.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56128391|gb|AAV77897.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62126956|gb|AAX64659.1| tol protein required for outer membrane integrity, uptake of group
           A colicins, and translocation of phage DNA to cytoplasm
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364381|gb|ABX68149.1| hypothetical protein SPAB_02777 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402663|gb|ACF62885.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408913|gb|ACF69132.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194711402|gb|ACF90623.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195629206|gb|EDX48574.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094533|emb|CAR60053.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197241631|gb|EDY24251.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288314|gb|EDY27695.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940082|gb|ACH77415.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603313|gb|EDZ01859.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320808|gb|EDZ06009.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205271794|emb|CAR36628.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205321482|gb|EDZ09321.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205326989|gb|EDZ13753.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205340301|gb|EDZ27065.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343044|gb|EDZ29808.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347158|gb|EDZ33789.1| peptidoglycan-associated lipoprotein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707996|emb|CAR32285.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261246012|emb|CBG23814.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992490|gb|ACY87375.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157340|emb|CBW16829.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911776|dbj|BAJ35750.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320085020|emb|CBY94809.1| Peptidoglycan-associated lipoprotein Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226328|gb|EFX51379.1| 18K peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615817|gb|EFY12735.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621376|gb|EFY18232.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623633|gb|EFY20471.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628905|gb|EFY25686.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634885|gb|EFY31615.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322636587|gb|EFY33291.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647828|gb|EFY44308.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651360|gb|EFY47742.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322652661|gb|EFY49010.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658642|gb|EFY54903.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664929|gb|EFY61120.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322668402|gb|EFY64558.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670510|gb|EFY66643.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675250|gb|EFY71326.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679676|gb|EFY75717.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684848|gb|EFY80847.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713794|gb|EFZ05365.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323191723|gb|EFZ76976.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200617|gb|EFZ85692.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202288|gb|EFZ87336.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205443|gb|EFZ90409.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212129|gb|EFZ96954.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216148|gb|EGA00877.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221361|gb|EGA05780.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226784|gb|EGA10975.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230998|gb|EGA15114.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234169|gb|EGA18258.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238136|gb|EGA22194.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243571|gb|EGA27589.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247404|gb|EGA31363.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251393|gb|EGA35265.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256484|gb|EGA40216.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260623|gb|EGA44232.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264694|gb|EGA48196.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270958|gb|EGA54393.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|332987686|gb|AEF06669.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 174

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169


>gi|320194769|gb|EFW69398.1| Integral membrane protein YfiB [Escherichia coli WV_060327]
          Length = 127

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEVLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A          G          G        ++      + NRR+ +++
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 124


>gi|302530640|ref|ZP_07282982.1| predicted protein [Streptomyces sp. AA4]
 gi|302439535|gb|EFL11351.1| predicted protein [Streptomyces sp. AA4]
          Length = 251

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+  ++    +     + +  +L  + +     + G     P         +LS +RA +
Sbjct: 148 FEPDTAQLTDQGEQAARDLAPLLRDAPDNFRYRLVGRVADGP--GGRSAALKLSRNRALT 205

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
             ++L++  V  DR+  ++           +  +S  RR++I VE R
Sbjct: 206 VIRLLIREDVPPDRLLAVASAGGSGTGADDNGGDSD-RRVEITVEQR 251


>gi|148259380|ref|YP_001233507.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326402601|ref|YP_004282682.1| outer membrane lipoprotein Omp16 [Acidiphilium multivorum AIU301]
 gi|146401061|gb|ABQ29588.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5]
 gi|325049462|dbj|BAJ79800.1| outer membrane lipoprotein Omp16 [Acidiphilium multivorum AIU301]
          Length = 167

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           + D  +   F  + S         L +    LA    V + I G+ D    R     N  
Sbjct: 49  VADVGDRAFFGFNKSNLTGADKATLDRQASWLAKYPNVDVLIAGNADP---RGTEAYNLA 105

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDI 336
           L   RA++A   L+  GV+  RI  +S +    L    +   + A  R+ I
Sbjct: 106 LGARRAHAARDYLVAKGVAASRIQTVS-YGKSCLVSPGNTEQDYAQDRVAI 155


>gi|117923780|ref|YP_864397.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1]
 gi|117607536|gb|ABK42991.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1]
          Length = 203

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
            N   F   S     E   VL +    ++    + +SI GH D    R     N  L   
Sbjct: 97  ENMIFFGYDSEALTYEAQTVLAQHAVAIIKGGVQSVSIEGHCDE---RGTREYNLALGQK 153

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           RA S    L   GV    + +   +   R      ++   + NRR
Sbjct: 154 RADSVKNFLNAQGVPTT-VMRTVSYGKERPLYTGHTETSWARNRR 197


>gi|224582568|ref|YP_002636366.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467095|gb|ACN44925.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|323129061|gb|ADX16491.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326622475|gb|EGE28820.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627054|gb|EGE33397.1| peptidoglycan-associated lipoprotein precursor [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 182

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 82  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 138

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 139 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 177


>gi|194295656|gb|ACF40855.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295658|gb|ACF40856.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295660|gb|ACF40857.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295662|gb|ACF40858.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295664|gb|ACF40859.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295666|gb|ACF40860.1| outer membrane protein [Riemerella anatipestifer]
          Length = 270

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 189 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 245

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GV+  ++  
Sbjct: 246 VVAALEARGVNPSQLKS 262


>gi|193222184|gb|ACF16363.1| outer membrane protein A [Riemerella anatipestifer]
 gi|194295638|gb|ACF40846.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295642|gb|ACF40848.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295644|gb|ACF40849.1| outer membrane protein [Riemerella anatipestifer]
          Length = 270

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 189 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 245

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GV+  ++  
Sbjct: 246 VVAALEARGVNPSQLKS 262


>gi|329755866|gb|AEC04330.1| outer membrane protein A [Pasteurella multocida]
          Length = 359

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 246 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 302

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L+  GV+++ IS  +G         +
Sbjct: 303 ANYLVAKGVAQNAISA-TGHGEANPVTGN 330


>gi|329755864|gb|AEC04329.1| outer membrane protein A [Pasteurella multocida]
          Length = 351

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 238 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 294

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L+  GV+++ IS  +G         +
Sbjct: 295 ANYLVAKGVAQNAISA-TGHGEANPVTGN 322


>gi|329755840|gb|AEC04317.1| outer membrane protein A [Pasteurella multocida]
 gi|329755846|gb|AEC04320.1| outer membrane protein A [Pasteurella multocida]
 gi|329755854|gb|AEC04324.1| outer membrane protein A [Pasteurella multocida]
          Length = 358

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P    VL  I   +A   +  +++ G+TD          N +LS  RA + 
Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L+  GV+++ IS  +G         +
Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGN 329


>gi|269102040|ref|ZP_06154737.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161938|gb|EEZ40434.1| outer membrane protein A precursor [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 339

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +    +         L ++   +  + EV   I G TDA         N ++S  RA   
Sbjct: 238 YQNGQTKLNDYGRYNLNEVVATMNANPEVTAQIVGRTDAV---GSKAINEKVSNARAQGV 294

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDILVE 339
            + L  +G+   R++ +S  A++   +A +  N AN   R + I+++
Sbjct: 295 AEYLEANGIDASRLT-VSSVANNDPLVAGN-SNGANLIERSVQIILK 339


>gi|224812457|gb|ACN64871.1| OmpA family lipoprotein [Burkholderia pseudomallei]
          Length = 177

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  I I+G+TD    R  +  N  L   RA + 
Sbjct: 75  FDFDSYSVQDQYQALLQQHAQYLKSHPQRHILIQGNTDE---RGTSEYNLALGQKRAEAV 131

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G          +   + NRR D++
Sbjct: 132 RRALSLLGVGDAQMEAVSLGKEKPVALGHDEASWAQNRRADLV 174


>gi|170738630|ref|YP_001767285.1| peptidoglycan-associated lipoprotein [Methylobacterium sp. 4-46]
 gi|168192904|gb|ACA14851.1| peptidoglycan-associated lipoprotein [Methylobacterium sp. 4-46]
          Length = 168

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  S+         L K  + L+        I GH D    R     N+ L   R
Sbjct: 58  DRVFFETDSTDLTATATATLDKQAQWLSRYPRYTFLIEGHADE---RGTREYNFSLGARR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           + +    L   G++  R+  +S +   R     + ++  S NRR
Sbjct: 115 SQAVRDYLTSRGIAASRMRTVS-YGKERPVAVCNDISCWSQNRR 157


>gi|21243867|ref|NP_643449.1| outer membrane protein P6 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109468|gb|AAM37985.1| outer membrane protein P6 precursor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 181

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 78  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 134

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 135 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 177


>gi|305664380|ref|YP_003860667.1| OmpA family protein [Maribacter sp. HTCC2170]
 gi|88708397|gb|EAR00633.1| OmpA family protein [Maribacter sp. HTCC2170]
          Length = 646

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           I + + I  +  + +  I +  HTD+      A + W LS  RA S    ++  G+ E R
Sbjct: 552 IEIQKVIAAMEKYPSLKIKVNSHTDSR--GRDAYNLW-LSQKRAESTVNYMISKGILESR 608

Query: 309 ISKISGFAHHRLKIA-SDPMN------SANRRIDILVED 340
           +    GF   +L    ++ +         NRR + ++ +
Sbjct: 609 LLG-EGFGETKLINKCANGVRCFGIEHEKNRRSEFIILE 646


>gi|116619652|ref|YP_821808.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222814|gb|ABJ81523.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 263

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQ----KIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
            I        FD   +    +    L      +  +L       I I GH D    R  A
Sbjct: 147 RIASDVQDAFFDYDKTDIRSDARDALTRNATALKAILNDFPGAAIVIEGHCDE---RGSA 203

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRI 334
             N  L   RA SA + L+  G+  DR+  IS G    +    ++     NRR+
Sbjct: 204 EYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKERPQCTEQNETCWQKNRRV 257


>gi|332665245|ref|YP_004448033.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334059|gb|AEE51160.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 798

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 226 ISIIDQR-------NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           I + D            +F  + +         + ++   L  +    + I  HT+ +  
Sbjct: 676 IQLFDPIVEKTIILENIIFLSNQAELDSSAYSEIHRLASFLNANPQLGVEIVAHTNNNCT 735

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335
            N A     L+  RA    ++L+ + ++ +RI +  G    +  +++       AN+R++
Sbjct: 736 YNFAA---DLTARRAEKIAELLIDAQIAAERI-RHRGSGKEQPLVSNATLTGRLANQRVE 791

Query: 336 I 336
           I
Sbjct: 792 I 792


>gi|296136887|ref|YP_003644129.1| peptidoglycan-associated lipoprotein [Thiomonas intermedia K12]
 gi|295797009|gb|ADG31799.1| peptidoglycan-associated lipoprotein [Thiomonas intermedia K12]
          Length = 180

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
             +  F  +S     +   VL      L    +  + ++G+TDA   R     N  L   
Sbjct: 73  PKSVYFAFNSYTVESQYTPVLNANATYLTQHPQAHVQLQGNTDA---RGSREYNLALGQK 129

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           RA +  + +   GV   ++  IS G    +    ++   + NRR+DI+
Sbjct: 130 RADAVMKGMELLGVKPSQMEAISYGKEKPKALGNTEADYAENRRVDIV 177


>gi|30314422|gb|AAP15420.1| outer membrane lipoprotein precursor [Burkholderia multivorans]
 gi|30314432|gb|AAP15425.1| outer membrane lipoprotein precursor [Burkholderia cepacia]
          Length = 149

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L   GV++ ++  +S     +           + NRR D++
Sbjct: 104 RRALALLGVADSQMEAVS-LGKEKPLATGHDEASWAQNRRADLV 146


>gi|95930003|ref|ZP_01312743.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95133972|gb|EAT15631.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 176

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        E    L +    L  +    + I GH D    R     N  L   RA +A
Sbjct: 74  FEFDQYTLSAEARDTLAENMRYLQANPGTTLVIEGHCDE---RGSDEYNLALGERRAVAA 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337
            Q L   GV+ DR+S IS +   +     +++   + NRR + +
Sbjct: 131 QQYLTSMGVATDRLSTIS-YGEEKPVDMASTEEAWAKNRRAEFV 173


>gi|254369026|ref|ZP_04985039.1| hypothetical protein FTAG_00866 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121947|gb|EDO66117.1| hypothetical protein FTAG_00866 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 417

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGH---------TDASPFRNIARDNW 285
           FD  S     +   VL K+   L    +T   +I+G+         TD    + +   N 
Sbjct: 70  FDADSYTLNTQAKKVLDKLFAYLKLTDTTN-FTIKGYAGKVESKILTDQ---KILTDYNI 125

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341
           RLS +RA S  + L+  G+       I    +      +D     + N+R++I ++ R
Sbjct: 126 RLSKNRASSVEEYLVNKGLGSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLKSR 183


>gi|282881633|ref|ZP_06290296.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304392|gb|EFA96489.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 717

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
           I++    +   +D   +    E+   L  + ++L  ++ V I +  H D   ++     N
Sbjct: 540 ITVPVLIDNIFYDFDKATLRLESKKALDDLVKLLNENSHVTIELSAHCD---YKGSKEYN 596

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            RL+  RA +  + L+  G+++DR+  + G+   + K
Sbjct: 597 QRLAQRRAEAVVRYLIDKGIAKDRLKPV-GYGKEKPK 632


>gi|329295949|ref|ZP_08253285.1| peptidoglycan-associated outer membrane lipoprotein [Plautia stali
           symbiont]
          Length = 172

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E   +L +    L  +    ++I GH D    R     N  L   RA + 
Sbjct: 72  FGLDKYDVQSEYAQMLDQHAAFLRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAV 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS  ++S +S +   +  +    +   + NRR
Sbjct: 129 KMYLQGKGVSAHQMSIVS-YGKEKPAVLGHDEAAYAKNRR 167


>gi|284036230|ref|YP_003386160.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283815523|gb|ADB37361.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 757

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +    L  + E+L    +  I +R HTD+   R     N RLS  RA +A   L+  
Sbjct: 655 IRADAAQELDHVLEILKEYPQMQIELRSHTDS---RATDTYNIRLSESRARAAMDYLVAR 711

Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342
           G+S  R+    G+    +          ++  +  NRR +  +   Q
Sbjct: 712 GISASRLIA-RGYGESEIINGCIDGVNCTEGEHQQNRRTEFKIVAVQ 757


>gi|145297581|ref|YP_001140422.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850353|gb|ABO88674.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 343

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 17/117 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + +   PE    L  + GE+ A      V ++ G+TD     + A  N RLS  RA
Sbjct: 224 LFDFNKATLKPEGGQALDTLYGEIEAARPTDGVATVIGYTD--RIGSDAY-NQRLSEQRA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN----------SANRRIDILVE 339
            +    L+  G+   +++ + G             +          + +RR+++ VE
Sbjct: 281 QTVADYLVGKGLPAGKVN-VEGRGKGSPVTGDSCTSKSKHELIVCLAPDRRVEVKVE 336


>gi|71281747|ref|YP_267714.1| ompA family protein [Colwellia psychrerythraea 34H]
 gi|71147487|gb|AAZ27960.1| ompA family protein [Colwellia psychrerythraea 34H]
          Length = 562

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
             +L+ +  +  H +  I + G +D+         N  LS  RA S    L   G+    
Sbjct: 476 RDLLRLVDFMEDHQSSRIVLMGFSDSV---GAQVKNTHLSYQRAKSVELALTSRGIP--- 529

Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
           +  +           ++  +    NRR+++ + 
Sbjct: 530 VLAVEAMGEALPIANNNTEDGRKRNRRVEVWLL 562


>gi|237730722|ref|ZP_04561203.1| peptidoglycan-associated outer membrane lipoprotein [Citrobacter
           sp. 30_2]
 gi|226906261|gb|EEH92179.1| peptidoglycan-associated outer membrane lipoprotein [Citrobacter
           sp. 30_2]
          Length = 180

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 80  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 136

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 137 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 175


>gi|167033093|ref|YP_001668324.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1]
 gi|166859581|gb|ABY97988.1| OmpA/MotB domain protein [Pseudomonas putida GB-1]
          Length = 435

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +  +Q++ E L  + +      + G  D   +P R        LS  R
Sbjct: 334 FQEGSASLDNKALRDVQRVAEYLRQAGKLQSKAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           A +  + L + GV    + +++G         +  +     NRR+++ V
Sbjct: 389 AQAVRRELARDGVE---VLEVTGMGDELPVAGNELEQGRLRNRRVEVWV 434


>gi|329957332|ref|ZP_08297852.1| OmpA family protein [Bacteroides clarus YIT 12056]
 gi|328523045|gb|EGF50148.1| OmpA family protein [Bacteroides clarus YIT 12056]
          Length = 410

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
           P     +     ++++ ++A       S L A       + ET       +I     T  
Sbjct: 254 PQLISALELSAMQQQMAEMAAANQQLESALTAAQNRPVEVTETEVVVTDPNI--APRTVF 311

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P  ++ +  + + +        ++ G+ D++        N  LSL RA + 
Sbjct: 312 FKIGSAELSPREVMNISYLAKQMQEFPNATYTVNGYADSA--TGTPEFNKELSLKRAQAV 369

Query: 296 YQVLMKS-GVSEDRI 309
             VL+K  G+  +R+
Sbjct: 370 VDVLVKDYGIPANRL 384


>gi|319956698|ref|YP_004167961.1| ompa/motb domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419102|gb|ADV46212.1| OmpA/MotB domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 173

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F        P +   ++  + ++    S+  I I G+ D          N  L L RA +
Sbjct: 70  FSTDRYDVEPDQLQRIMSDMPKIQKLASSGKIRIEGNCDEM---GTDEYNHALGLKRAKA 126

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
              +L+ +G+   RI  +S +          S P ++ NRR++I
Sbjct: 127 VQSILVSNGIPSSRIDVVS-YGESNPICTGHSAPCHAKNRRVEI 169


>gi|37525408|ref|NP_928752.1| peptidoglycan-associated outer membrane lipoprotein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784836|emb|CAE13749.1| peptidoglycan-associated lipoprotein precursor [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 166

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 15/162 (9%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
            LP ++     + K     Q     ++ T +GL A+ + +  + E          +   N
Sbjct: 13  ALPVMAVAACSSNKNADNDQTGVGTVNETNAGLSAEELARQQMQE----------LQNNN 62

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F         +   +L      L  +    + + GH D    R     N  L   RA
Sbjct: 63  IVYFGFDKYDINSDFTQLLDAHAAFLRSNPSYKVVVEGHADE---RGTPEYNIALGERRA 119

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            +    L   GVS ++IS +S G     +    +   + NRR
Sbjct: 120 NAVKMYLQGKGVSGEQISIVSYGKEKPAVLGHDEAAYAKNRR 161


>gi|328469233|gb|EGF40179.1| hypothetical protein VP10329_10131 [Vibrio parahaemolyticus 10329]
          Length = 301

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           TP FD   S    E +  L    E L      I + GHTD     +++  N +L+  RA 
Sbjct: 188 TPHFDFDQSELKAEDLTQLDDFIEQLQGLEGSILVAGHTD--QVGSLSY-NEKLAERRAQ 244

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDP--MNSANRR 333
           +  + L K+ +   R+  ++  F   +  I       N+ NRR
Sbjct: 245 TVAEYL-KTKLDASRLVWEVKAFGELQPVINQTTSEANALNRR 286



 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD             L      +   +  I+I GHTD   ++     N  LSL RA S  
Sbjct: 62  FDFDKFKIREADATSLDAFIRDIQGLSGRITIVGHTD---YKGSNEYNDALSLRRAQSVA 118

Query: 297 QVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333
             L +         +I  F   +      SD   + NRR
Sbjct: 119 AYLKQQLDPTFYDWEIKHFGETQPLTLDTSDQARAENRR 157


>gi|157964921|ref|YP_001499745.1| peptidoglycan-associated lipoprotein precursor [Rickettsia
           massiliae MTU5]
 gi|157844697|gb|ABV85198.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia
           massiliae MTU5]
          Length = 164

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+      +++ GH D    R     N  L   RA + 
Sbjct: 62  FAFDSSALSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGAKEYNIGLGERRAAAV 118

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+  +R++ IS +   R  +  +     + NRR
Sbjct: 119 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 157


>gi|258622513|ref|ZP_05717535.1| lateral flagellar MotY-like protein [Vibrio mimicus VM573]
 gi|258585213|gb|EEW09940.1| lateral flagellar MotY-like protein [Vibrio mimicus VM573]
          Length = 358

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRL 287
           D+     F         E  + L+ +   +        + + G+TD       +  N  +
Sbjct: 226 DREVVIYFAFGQRTLSNEQKMRLRALYRYIVEDSRVNKVLVDGYTDNV---GPSVANLTI 282

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
           S  RA    + L + G++E+++  +          ++D     + NRR+ +
Sbjct: 283 SRQRAELIAKELNRLGLAEEKVE-VRAHGLRYPVASNDTATGQAKNRRVTL 332


>gi|189349521|ref|YP_001945149.1| peptidoglycan-associated lipoprotein [Burkholderia multivorans ATCC
           17616]
 gi|221201005|ref|ZP_03574045.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD2M]
 gi|221206543|ref|ZP_03579556.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD2]
 gi|221214397|ref|ZP_03587368.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD1]
 gi|189333543|dbj|BAG42613.1| peptidoglycan-associated lipoprotein [Burkholderia multivorans ATCC
           17616]
 gi|221165654|gb|EED98129.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD1]
 gi|221173852|gb|EEE06286.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD2]
 gi|221178855|gb|EEE11262.1| peptidoglycan-associated outer-membrane lipoprotein [Burkholderia
           multivorans CGD2M]
          Length = 169

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRALALLGVADSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 166


>gi|323177269|gb|EFZ62857.1| ompA family protein [Escherichia coli 1180]
          Length = 127

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHAHMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|219681692|ref|YP_002468078.1| outer membrane protein A precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682247|ref|YP_002468631.1| outer membrane protein A precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471385|ref|ZP_05635384.1| outer membrane protein A precursor [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621980|gb|ACL30136.1| outer membrane protein A precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624535|gb|ACL30690.1| outer membrane protein A precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086068|gb|ADP66150.1| outer membrane protein A precursor [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086640|gb|ADP66721.1| outer membrane protein A precursor [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087225|gb|ADP67305.1| outer membrane protein A precursor [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087744|gb|ADP67823.1| outer membrane protein A precursor [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 349

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   P +   L K+ + +         I + GH D     +    N +LS DRAY
Sbjct: 233 FPFNSTELKPSSYDKLNKLDDDIKDMQLKNVSIVLLGHADK--IGSDEY-NQKLSEDRAY 289

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVED 340
           S    L   G S D+I+ + G             +  N           RR++I V  
Sbjct: 290 SIKNYLASRGFSRDKIT-VKGMGKLYPLTNQVCRDVVNKPLLISCLAPDRRVEIEVLS 346


>gi|146282539|ref|YP_001172692.1| OmpA family protein [Pseudomonas stutzeri A1501]
 gi|145570744|gb|ABP79850.1| OmpA family protein [Pseudomonas stutzeri A1501]
          Length = 457

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L+++ E L      T+  ++ G  DA+  P R        LS  R
Sbjct: 356 FEEGSAQLDNKAQRDLERVVEYLRDNGKLTDSAALVGFGDATGDPARAAL-----LSKLR 410

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L K GV    + +I+G        ++D  +    NRR+++ V
Sbjct: 411 AMTVRRELNKRGVF---LKEINGMGSELPVASNDAGSGRVKNRRVEVWV 456


>gi|15616938|ref|NP_240151.1| outer membrane protein A precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386970|sp|P57414|OMPA_BUCAI RecName: Full=OmpA-like protein; Flags: Precursor
 gi|10039003|dbj|BAB13037.1| outer membrane protein A precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 349

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   P +   L K+ + +         I + GH D     +    N +LS DRAY
Sbjct: 233 FPFNSTELKPSSYDKLNKLDDDIKDMQLKNVSIVLLGHADK--IGSDEY-NQKLSEDRAY 289

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVED 340
           S    L   G S D+I+ + G             +  N           RR++I V  
Sbjct: 290 SIKNYLASRGFSRDKIT-VKGMGKLYPLTNQVCRDVVNKPLLISCLAPDRRVEIEVLS 346


>gi|317481533|ref|ZP_07940589.1| OmpA family protein [Bacteroides sp. 4_1_36]
 gi|316902303|gb|EFV24201.1| OmpA family protein [Bacteroides sp. 4_1_36]
          Length = 170

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +LA+  +   +   A    K  + E T+       +       F   S+       V ++
Sbjct: 36  ELAQAQADLANCKNALANAKPEVKEVTKE----VEVAGPRAIFFKIGSARLDDYGKVNIE 91

Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
              ++L  + +    + G+ D +     A  N +LS  RA   Y  L+  GV +D++  +
Sbjct: 92  LAAKILKANPDKKYKVAGYADKA--TGSASWNQKLSEKRAQVVYDALIAQGVDKDQLELV 149

Query: 313 SGFAHHRLKIASDPMNSANRRIDIL 337
            GF         + +N    R+ IL
Sbjct: 150 -GFGGTENMFGKNFLN----RVVIL 169


>gi|240950110|ref|ZP_04754405.1| lipoprotein Plp4/outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           minor NM305]
 gi|240295411|gb|EER46180.1| lipoprotein Plp4/outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           minor NM305]
          Length = 164

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   S+   +    L  I + +  +    +++ G+TD       A  N +LS  R
Sbjct: 54  GDFLFDFDKSVLSAQGKSTLNGIAKEIKEAGAKNVTVTGYTDRL---GSAAYNQKLSQAR 110

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDIL 337
           A +    L   GVS + I  +  G A+       +   +       NRR+ I+
Sbjct: 111 AATTKAYLQSQGVSAN-IKAVGRGAANQVKACKGETGQALKDCLKPNRRVHII 162


>gi|312884426|ref|ZP_07744130.1| putative outer membrane protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367738|gb|EFP95286.1| putative outer membrane protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 198

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  SS   P  +  ++ + + L    +  + ++G  +          N  LS  RA +
Sbjct: 82  LFENDSSEVSPIYLSQIRSMADFLDKYPDTSVELQGFANHL---GSHSHNLELSKQRASN 138

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
             +VL++ GV  +RI  I GF   +
Sbjct: 139 VKKVLVRYGVDFERI-SIVGFGDAK 162


>gi|262066274|ref|ZP_06025886.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380021|gb|EFE87539.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 75

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           +++ GHTD+    +    N  LS  RA +    L++ G++E+RI  I           ++
Sbjct: 1   VTLEGHTDS--IGSNQY-NIGLSRRRAEAVKAKLIEFGLAEERIVGIEAKGEEYPVATNE 57

Query: 326 PMNSA--NRRIDILVEDR 341
                  NRR++  +  R
Sbjct: 58  TPEGRLQNRRVEFRLVQR 75


>gi|262041199|ref|ZP_06014411.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041428|gb|EEW42487.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 174

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNIALGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169


>gi|313157808|gb|EFR57219.1| OmpA family protein [Alistipes sp. HGB5]
          Length = 376

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           + R    F   SS         +  + E L  + E  + I G+ DA+        N ++S
Sbjct: 272 ELRENIFFRIGSSQIRTTEEAKVGALVEYLKANPEANVEIVGYADAA--TGSHAVNLKIS 329

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             RA S    L K+G++  RIS   G           P    N R+ I +
Sbjct: 330 KLRAESVAAALKKAGIAASRISA-EGRGDTAQPF---PGVEKN-RVSICI 374


>gi|298482993|ref|ZP_07001174.1| outer membrane protein [Bacteroides sp. D22]
 gi|298270737|gb|EFI12317.1| outer membrane protein [Bacteroides sp. D22]
          Length = 397

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      F+    +    +   L ++ E+L    +    I G+TDA   +     N  LS
Sbjct: 276 DLLENIHFEFDRDVITATSERTLDRLAELLKSYPDSRFLITGYTDA---KGSDSYNLTLS 332

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
             RA   +  L+  GV   R+ K  G       I++   +
Sbjct: 333 ARRAEKVHAALIGRGVPA-RMIKWRGVGKRAAIISATAAD 371


>gi|161525757|ref|YP_001580769.1| peptidoglycan-associated lipoprotein [Burkholderia multivorans ATCC
           17616]
 gi|160343186|gb|ABX16272.1| peptidoglycan-associated lipoprotein [Burkholderia multivorans ATCC
           17616]
          Length = 176

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 74  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 131 RRALALLGVADSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 173


>gi|115360985|ref|YP_778122.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115286313|gb|ABI91788.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 264

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 17/123 (13%)

Query: 232 RNTPMFDKSSSIP---LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           ++  +F    S     LP     L    E +    E   I + GHTD      +   N  
Sbjct: 145 QSDALFAFGKSSLDSMLPAGKAQLDDAIERIKRHKEITRIVVVGHTDRIGPSTV---NEP 201

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILV 338
           LS  RA +    L+  G++   I +  G    +         S         +RR+ I V
Sbjct: 202 LSRARAQTVRGYLISHGLNGS-IIEAEGVGSSQPVTHCPAGQSRAVIACLQPDRRVSISV 260

Query: 339 EDR 341
             R
Sbjct: 261 SGR 263


>gi|114706993|ref|ZP_01439892.1| hypothetical protein FP2506_03039 [Fulvimarina pelagi HTCC2506]
 gi|114537543|gb|EAU40668.1| hypothetical protein FP2506_03039 [Fulvimarina pelagi HTCC2506]
          Length = 710

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+    E +  L+ + + ++        E   I GHTDA         N +LS  R
Sbjct: 593 FGFGSAEISQEQVSNLEALAQAISEVIDQNPDETFIIEGHTDAV---GTDLANLKLSDQR 649

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +    L     V  + +    G+    LK+ +   N+ NRR+ +
Sbjct: 650 AETVAAALTNFFDVPPENLI-TQGYGEQFLKVDTQDQNAENRRVTV 694


>gi|294341056|emb|CAZ89451.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface
           antigen) (PPL) [Thiomonas sp. 3As]
          Length = 182

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
             +  F  +S     +   VL      L    +  + ++G+TDA   R     N  L   
Sbjct: 75  PKSVYFAFNSYTVESQYTPVLNANATYLTQHPQAHVQLQGNTDA---RGSREYNLALGQK 131

Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           RA +  + +   GV   ++  IS G    +    ++   + NRR+DI+
Sbjct: 132 RADAVMKGMELLGVKPSQMEAISYGKEKPKALGNTEADYAENRRVDIV 179


>gi|312114023|ref|YP_004011619.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219152|gb|ADP70520.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 302

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           +   + N   P + ++ + A    +   D    ++    G V  ++ +G+        + 
Sbjct: 136 AGGNKTNPVSPAIIEDLVKASYEARAFADGYVSVAHNTRGGVGGSLDRGIPVRKVP--LP 193

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDN 284
           I          F+       P       ++   +      VI + GHTD    R     N
Sbjct: 194 IQ---------FETDRDELTPVGRQYADELAAAINEQRPAVIILEGHTDE---RGTDAHN 241

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMN-------SANRRI 334
             LS  R       L +      RI ++  G       +  +  N         NRR+
Sbjct: 242 MDLSKRRVERVAAYLKREKGVAARIETRARGK--TEPYVPQNASNLTNEQLWELNRRV 297


>gi|148926911|ref|ZP_01810589.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844488|gb|EDK21596.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|284925406|gb|ADC27758.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 165

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            + D  N   FD       P+   V+     +     S   I++ G+ D          N
Sbjct: 52  QLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +  + L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKEALIAKGVNADRI-AVKSYGETNPVCTEKTKACDAQNRRAE 160


>gi|153952154|ref|YP_001397367.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152939600|gb|ABS44341.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 165

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            + D  N   FD       P+   V+     +     S   I++ G+ D          N
Sbjct: 52  QLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +  + L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKEALIAKGVNADRI-AVKSYGETNPVCTEKTKACDAQNRRAE 160


>gi|145298281|ref|YP_001141122.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|1332434|emb|CAA63036.1| outer membrane protein [Aeromonas salmonicida]
 gi|142851053|gb|ABO89374.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|1588798|prf||2209353A major outer membrane protein OmpAI
          Length = 339

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F         E +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 219 LFAFGKDSLKAEGVEALNSLYQQIVDFQPKDGSAVVVGYTD--RIGSDAY-NQKLSEARA 275

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
            +    L+  G++  ++  + G         +  D + +          +RR++I V
Sbjct: 276 RTVANFLVSKGMAASKV-AVEGRGEANPVTGNKCDGVKAKAQLISCLAPDRRVEIRV 331


>gi|57237120|ref|YP_178132.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           RM1221]
 gi|86149517|ref|ZP_01067747.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86151400|ref|ZP_01069615.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153754|ref|ZP_01071957.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88597159|ref|ZP_01100394.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121612869|ref|YP_999837.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157414426|ref|YP_001481682.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167004808|ref|ZP_02270566.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356488|ref|ZP_03223252.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|218561794|ref|YP_002343573.1| peptidoglycan associated lipoprotein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283955557|ref|ZP_06373052.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|315123715|ref|YP_004065719.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|1063274|emb|CAA58288.1| precursor of peptidoglycane associated lipoprotein [Campylobacter
           jejuni]
 gi|57165924|gb|AAW34703.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           RM1221]
 gi|85839785|gb|EAQ57044.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85841747|gb|EAQ58994.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842715|gb|EAQ59927.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250340|gb|EAQ73298.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88190220|gb|EAQ94194.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359500|emb|CAL34284.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|157385390|gb|ABV51705.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|205345675|gb|EDZ32314.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|283793018|gb|EFC31792.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747070|gb|ADN90340.1| Peptidoglycan associated lipoprotein (Omp18) [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315017437|gb|ADT65530.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315057553|gb|ADT71882.1| Outer membrane lipoprotein omp16 precursor [Campylobacter jejuni
           subsp. jejuni S3]
 gi|315926949|gb|EFV06311.1| peptidoglycan-associated lipoprotein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929959|gb|EFV09113.1| peptidoglycan-associated lipoprotein [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931507|gb|EFV10474.1| peptidoglycan-associated lipoprotein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 165

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            + D  N   FD       P+   V+     +     S   I++ G+ D          N
Sbjct: 52  QLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +  + L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKEALIAKGVNADRI-AVKSYGETNPVCTEKTKACDAQNRRAE 160


>gi|260467234|ref|ZP_05813410.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029009|gb|EEW30309.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 403

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  SS      +  LQ +     ++L  +  E   I GHTDA         N  LS  R
Sbjct: 288 FEFGSSSISDTEVQKLQGVADAMEKLLKKNPAETFLIEGHTDAV---GTPEANLALSDRR 344

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +  + L  + G+  + ++   G+    LK+ +   N  NRR+ I
Sbjct: 345 AEAVAEALTNAFGIPAENLT-TQGYGEEYLKVDTSAPNRENRRVAI 389


>gi|152969309|ref|YP_001334418.1| peptidoglycan-associated outer membrane lipoprotein [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206576207|ref|YP_002239637.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae 342]
 gi|288936478|ref|YP_003440537.1| peptidoglycan-associated lipoprotein [Klebsiella variicola At-22]
 gi|290510465|ref|ZP_06549835.1| peptidoglycan-associated lipoprotein [Klebsiella sp. 1_1_55]
 gi|329998743|ref|ZP_08303197.1| peptidoglycan-associated lipoprotein [Klebsiella sp. MS 92-3]
 gi|150954158|gb|ABR76188.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206565265|gb|ACI07041.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae 342]
 gi|288891187|gb|ADC59505.1| peptidoglycan-associated lipoprotein [Klebsiella variicola At-22]
 gi|289777181|gb|EFD85179.1| peptidoglycan-associated lipoprotein [Klebsiella sp. 1_1_55]
 gi|328538570|gb|EGF64674.1| peptidoglycan-associated lipoprotein [Klebsiella sp. MS 92-3]
          Length = 174

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNIALGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169


>gi|39933290|ref|NP_945566.1| OmpA family protein [Rhodopseudomonas palustris CGA009]
 gi|39652915|emb|CAE25657.1| possible OmpA family member [Rhodopseudomonas palustris CGA009]
          Length = 689

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    LQ I + L  + +        I GHTDA        DN  LS  R
Sbjct: 563 FDLGSWDIPPDQAAKLQAIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 619

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +A  +L +  GV  + ++   G+    LKI +      NRR+ I
Sbjct: 620 AEAAAALLTQQFGVPAENLTS-QGYGEQYLKIQTQAPERQNRRVTI 664


>gi|126735562|ref|ZP_01751307.1| Outer membrane protein, OmpA/MotB family [Roseobacter sp. CCS2]
 gi|126714749|gb|EBA11615.1| Outer membrane protein, OmpA/MotB family [Roseobacter sp. CCS2]
          Length = 599

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 96/281 (34%), Gaps = 22/281 (7%)

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN- 130
            G   +     + +       S    +    DE +     D+ +     + Q +  ++  
Sbjct: 317 VGLGAVVVGSVLNNGDEVVSNSGDRVVVRRNDELVVLKDDDVLLRQPGSQVQTESFDDGS 376

Query: 131 ---IFYLSNSQQSEHCKNSLTRDSEKGKDLCKST-----DLEKSINKEENYFLPPLSKEK 182
              I    +  Q +  + S  R  ++ +     +     D  +  +  +   LP + +++
Sbjct: 377 TRVIVTRQDGTQIKTIRGSDGRVLQRTRIFADGSEYVLFDDTQRADPIDMTQLPQVEEDR 436

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           +     +  +  L   + +T +  +     ++ +        +   I  + +T  F  +S
Sbjct: 437 VQPQTSQGDVDSLRLALMATQNAAIDRTFSLRQIRQVREVRALAPEI--ELDTITFATAS 494

Query: 242 SIPLP----ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           +   P    E   +   I  ++      +  I GHTDA      A  N  LS  RA +  
Sbjct: 495 AAIQPSQAEELTNLAVAISNIIEDDPRQVFLIEGHTDAV---GDASYNLALSDRRAETVA 551

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
             + +   +  + +    G+    LK+++     ANRR  I
Sbjct: 552 LAMTEYFDIPPENLI-TQGYGESALKVSTPGPERANRRASI 591


>gi|283955279|ref|ZP_06372779.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793193|gb|EFC31962.1| peptidoglycan associated lipoprotein (omp18) [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 165

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            + D  N   FD       P+   V+     +     S   I++ G+ D          N
Sbjct: 52  QLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVNITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +  + L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKEALIAKGVNADRI-AVKSYGETNPVCTEKTKACDAQNRRAE 160


>gi|261211899|ref|ZP_05926186.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp.
           RC341]
 gi|260839249|gb|EEX65881.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp.
           RC341]
          Length = 172

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           + T   +    + +  T  F   ++    +   +L      L  +    +++ GH D   
Sbjct: 53  QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLKVTVEGHADE-- 110

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            R     N  L   RA +  + L   GV   +IS +S +   +  +   S+   + NRR
Sbjct: 111 -RGTPEYNIALGERRAQAVSKYLEALGVQAGQISIVS-YGEEKPLVLGQSEEAYAKNRR 167


>gi|119356692|ref|YP_911336.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354041|gb|ABL64912.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 162

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
               +D  SS+   E    L +    +       I I+GH D    R  +  N  L   R
Sbjct: 57  GDVFYDFDSSLLSSEAQEQLTRNSGWMKSNVQAAIIIQGHCDD---RGTSEYNLALGDRR 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A SA + L+++G++  RI  I+ F   R      S+   + NRR
Sbjct: 114 AVSAREFLIRTGIASSRIETIT-FGEERPFSTSQSEEGLAKNRR 156


>gi|308448969|ref|XP_003087813.1| hypothetical protein CRE_11630 [Caenorhabditis remanei]
 gi|308252596|gb|EFO96548.1| hypothetical protein CRE_11630 [Caenorhabditis remanei]
          Length = 264

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 250 VVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            V+ KI + +  +     I + G+TD          N RLS  RA +   +L + G+  D
Sbjct: 169 EVISKIADQIKQTDGNSKIFVAGYTDRL---GSFPYNQRLSAARANTVVDLLKQQGIPAD 225

Query: 308 RISKISGFAHHRLKIASDPMN---------SANRRIDI 336
           +I + S      +    + MN         + NRR++I
Sbjct: 226 QI-QFSAENKTDVYQKCNGMNKKIQLVECLAPNRRVNI 262


>gi|238893777|ref|YP_002918511.1| peptidoglycan-associated outer membrane lipoprotein [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546093|dbj|BAH62444.1| peptidoglycan-associated lipoprotein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 182

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 82  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNIALGERRANAV 138

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 139 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 177


>gi|198282220|ref|YP_002218541.1| peptidoglycan-associated lipoprotein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667535|ref|YP_002424585.1| peptidoglycan-associated lipoprotein, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198246741|gb|ACH82334.1| peptidoglycan-associated lipoprotein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519748|gb|ACK80334.1| peptidoglycan-associated lipoprotein, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 192

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           ++AH    + + G+TD    R     N  L   RA +  Q L   GVS  RIS +S F  
Sbjct: 108 MVAHPHVQVRLEGNTDD---RGTQEYNLALGEQRAETVKQFLQSQGVSAARISTVS-FGK 163

Query: 318 HRLKIASDPMN--SANRRIDIL 337
                 ++     + NRR+D +
Sbjct: 164 DNPLCTTNDSACWARNRRVDFV 185


>gi|51473939|ref|YP_067696.1| peptidoglycan-associated lipoprotein precursor [Rickettsia typhi
           str. Wilmington]
 gi|51460251|gb|AAU04214.1| peptidoglycan-associated lipoprotein precursor [Rickettsia typhi
           str. Wilmington]
          Length = 155

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+   P+    L++    L+      +++ GH D    R     N  L   RA +A
Sbjct: 53  FAFDSASLSPKAKEDLERQACWLSKHPEVKVTVEGHCDE---RGTRDYNIALGERRAAAA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
            Q L   G++ +R++ IS +   +  +  +   +   NRR
Sbjct: 110 KQFLANKGIAHNRLNTIS-YGKDKPAMMGNTEEAFSYNRR 148


>gi|261341331|ref|ZP_05969189.1| peptidoglycan-associated lipoprotein [Enterobacter cancerogenus
           ATCC 35316]
 gi|296103328|ref|YP_003613474.1| peptidoglycan-associated outer membrane lipoprotein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|288316636|gb|EFC55574.1| peptidoglycan-associated lipoprotein [Enterobacter cancerogenus
           ATCC 35316]
 gi|295057787|gb|ADF62525.1| peptidoglycan-associated outer membrane lipoprotein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 173

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   + NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168


>gi|90022215|ref|YP_528042.1| OmpA family protein [Saccharophagus degradans 2-40]
 gi|89951815|gb|ABD81830.1| OmpA/MotB [Saccharophagus degradans 2-40]
          Length = 230

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
            +          L+ E      +++ L     ++    + L  D      + +     + 
Sbjct: 54  PVGAFIGAVTGSLAAEHADTKHQQQELTIAMNEVEEMKAQLEKDQQRASAMEQKAAEKLE 113

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
             +       +F   S       +  +  +   L  + E  +++ GH D    R     N
Sbjct: 114 FQV-------LFTTGSDELSQTDLKRVNSVARYLNTNPELKVNLEGHADP---RGTDEYN 163

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
           + LS +R  S  + L + G+   R++  +  +        D    + +RR+ I
Sbjct: 164 YVLSEERVKSVIKALEEKGIDRSRVTYSAYGSDLSTAYQGDLEAYALDRRVKI 216


>gi|320158393|ref|YP_004190771.1| membrane protein [Vibrio vulnificus MO6-24/O]
 gi|319933705|gb|ADV88568.1| membrane protein [Vibrio vulnificus MO6-24/O]
          Length = 188

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q  A+ ++  +  + A N  +   F+  +  ++++    +         +    + I   
Sbjct: 54  QTEARVLNRDVQKVKAQNSSEHCFFDEKKMSLVLNYQHNKF------GLTDIHQDAIRSY 107

Query: 253 QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I +         IS+ GH D++        N +LS  RA +  + L K     +RI +
Sbjct: 108 IGIVD-----PNRKISVEGHADST---GSDTYNKQLSARRANTVARFLKKDLGLGNRIVE 159

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDILVE 339
              F           +  N  NRR+ + +E
Sbjct: 160 -KAFGETTPICAAEENQQNGCNRRVVLTLE 188


>gi|227498859|ref|ZP_03928999.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904311|gb|EEH90229.1| predicted protein [Acidaminococcus sp. D21]
          Length = 354

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F      PLP     +  + +V     +    + G+TD+    + A  N  LS  R    
Sbjct: 252 FASDDDQPLPSERDKMDHLVQVAKDHPDSTFKLVGNTDSD--ASDAY-NEDLSKRRVDHV 308

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            Q +  +GVS DR+     G        A++   + NRR+D+
Sbjct: 309 AQYVSNNGVSSDRLKLNYKGEKDPVASNATEQGKADNRRVDV 350


>gi|27366554|ref|NP_762081.1| outer membrane protein [Vibrio vulnificus CMCP6]
 gi|27358120|gb|AAO07071.1|AE016808_91 Outer membrane protein [Vibrio vulnificus CMCP6]
          Length = 188

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q  A+ ++  +  + A N  +   F+  +  ++++    +         +    + I   
Sbjct: 54  QTEARVLNRDVQKVKAQNSSEHCFFDEKKMSLVLNYQHNKF------GLTDIHQDAIRSY 107

Query: 253 QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             I +         IS+ GH D++        N +LS  RA +  + L K     +RI +
Sbjct: 108 IGIVD-----PNRKISVEGHADST---GSDTYNKQLSARRANTVARFLKKDLGLGNRIVE 159

Query: 312 ISGFAHHRLK--IASDPMNSANRRIDILVE 339
              F           +  N  NRR+ + +E
Sbjct: 160 -KAFGETTPICAAEENQQNGCNRRVVLTLE 188


>gi|57168718|ref|ZP_00367850.1| omp18 [Campylobacter coli RM2228]
 gi|305432654|ref|ZP_07401815.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter coli
           JV20]
 gi|1245150|gb|AAC35420.1| omp18 [Campylobacter coli]
 gi|4454089|emb|CAA10786.1| PAL protein, putative [Campylobacter jejuni]
 gi|57019999|gb|EAL56679.1| omp18 [Campylobacter coli RM2228]
 gi|304444365|gb|EFM37017.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter coli
           JV20]
          Length = 165

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284
            + D      FD       P+   V+     +  +  S   I++ G+ D          N
Sbjct: 52  QLNDTLGKVYFDFDKFNIRPDMQNVVNTNANIFNNEVSGVSITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +  + L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKEALIAQGVNSDRI-AVKSYGETNPVCTEKTKACDAQNRRAE 160


>gi|160898836|ref|YP_001564418.1| peptidoglycan-associated lipoprotein [Delftia acidovorans SPH-1]
 gi|160364420|gb|ABX36033.1| peptidoglycan-associated lipoprotein [Delftia acidovorans SPH-1]
          Length = 180

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   +    ++     L  S+   + I GHTD    R     N  L   RA + 
Sbjct: 79  FDFDSYVVKADAQPQIEAHARFLKASSARKVQIEGHTDE---RGGREYNLALGQKRAEAV 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GVS+ ++  +S +   +      S+   + NRR ++
Sbjct: 136 RRSLGLLGVSDAQMEAVS-YGKEKPAAEGHSEDAYAQNRRAEL 177


>gi|118581722|ref|YP_902972.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504432|gb|ABL00915.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 180

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD   S    +    L K  +++     +   + I GH D    R  A  N  L   RA 
Sbjct: 77  FDFDKSDLRQDARDALSKNADIMLKTNTAAN-VKIEGHCDE---RGSAEYNMALGERRAK 132

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           SA Q L+  GV   R+S +S +   +      ++   + NRR + +V
Sbjct: 133 SALQYLLTLGVPSQRLSIVS-YGEEKPAAQGGNEEAWAKNRRTEFVV 178


>gi|89076293|ref|ZP_01162634.1| hypothetical protein SKA34_22947 [Photobacterium sp. SKA34]
 gi|89047997|gb|EAR53586.1| hypothetical protein SKA34_22947 [Photobacterium sp. SKA34]
          Length = 261

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL--------FETTRTGILISIIDQ 231
           KE +        +  L  +  + +     D +    L         E     +L   +D 
Sbjct: 76  KEALNGFDHDAEMTLLKYQTQNAVIQQQMDWLEYHTLCLQPNYSEVELKERFLLYMEVDN 135

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  + +  LP+    L+   E+L   +   + + G+TD+       + N+ L L+
Sbjct: 136 Q----FALNKTTLLPKYQESLRYAAEILKRQSHWHLQLTGYTDSQ---GHIQGNYMLGLE 188

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           RA +    L+++GV  ++I  +     ++    +      N R
Sbjct: 189 RANAVKDFLIENGVDTNQI-SVFSVGENQAVADNTLTKQLNNR 230


>gi|330446461|ref|ZP_08310113.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490652|dbj|GAA04610.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 166

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   ++  PE I  L      +   +  I I GHTD   ++     N  LSL R+++  
Sbjct: 63  FDFDKAVLKPEDIKELDDFIAKIHSLSGDILIAGHTD---YQGSDSYNEALSLRRSHAIE 119

Query: 297 QVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NSANRR 333
             L    + E     ++  F      +    +  N+ NRR
Sbjct: 120 SYLKAR-IDESHYQFEVKYFGEKNPIVKGHSLKANALNRR 158


>gi|327480795|gb|AEA84105.1| OmpA family protein [Pseudomonas stutzeri DSM 4166]
          Length = 457

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F++ S+    +    L+++ E L      T+  ++ G  DA+  P R        LS  R
Sbjct: 356 FEEGSAQLDNKAQRDLERVVEYLRDNGKLTDSAALVGFGDATGDPARAAL-----LSKLR 410

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L K GV    + +I+G        ++D  +    NRR+++ V
Sbjct: 411 AMTVRRELNKRGVF---LKEINGMGSELPVASNDAGSGRVKNRRVEVWV 456


>gi|50120313|ref|YP_049480.1| peptidoglycan-associated outer membrane lipoprotein [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610839|emb|CAG74284.1| peptidoglycan-associated lipoprotein precursor [Pectobacterium
           atrosepticum SCRI1043]
          Length = 169

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         E   +L      L  +    ++I GH D    R    
Sbjct: 56  LQMQELQRNNIVYFGLDKYDVSSEFAQMLDAHAAFLRSNPSYKVTIEGHADE---RGTPE 112

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   + NRR
Sbjct: 113 YNIALGERRANAVQMYLQGKGVSSDQISIVSYGKEKPAVLGHDEAAYAKNRR 164


>gi|89073378|ref|ZP_01159902.1| hypothetical protein SKA34_20552 [Photobacterium sp. SKA34]
 gi|89050865|gb|EAR56339.1| hypothetical protein SKA34_20552 [Photobacterium sp. SKA34]
          Length = 166

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   ++  PE I  L      +   +  I I GHTD   ++     N  LSL R+++  
Sbjct: 63  FDFDKAVLKPEDIKELDDFIAKIHSLSGDILIAGHTD---YQGSDSYNEALSLRRSHAIE 119

Query: 297 QVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NSANRR 333
             L    + E     ++  F      +    +  N+ NRR
Sbjct: 120 SYLKAR-IDESHYHFEVKYFGEKNPIVKGHSLKSNALNRR 158


>gi|170726476|ref|YP_001760502.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169811823|gb|ACA86407.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908]
          Length = 238

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 20/226 (8%)

Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177
           +N     ++L+           +             G  +   T      +  ++  +  
Sbjct: 17  SNATHAQEQLDEREHNEELVGLTSGIVLGAVVGGPVGAIIGAFTGALLGKSVGDDSEIDA 76

Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237
              +       K+ L  +A +       L    + +         G+ I          F
Sbjct: 77  QHAKIAALSSDKQSLLVIADQYDEAQQQLAELKLAQDQKLTELAMGLNIQ---------F 127

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
              SS   P     L  +   +  S E  + + G+ D    R  +  N  LS  R     
Sbjct: 128 KTGSSELAPHIKRQLDDLAYAITISPELRLDMTGYADR---RGDSTYNQALSEQRVAEVK 184

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDILV 338
             L+  GV E R+     F        ++  +  N    RR++I +
Sbjct: 185 SYLVSQGVDESRL-SYKAFGASAPL--TEDQSFENDFFDRRVNIKL 227


>gi|29349260|ref|NP_812763.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570394|ref|ZP_04847803.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298384800|ref|ZP_06994359.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|29341168|gb|AAO78957.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840775|gb|EES68857.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298261944|gb|EFI04809.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 394

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD-NWRLSLDR 291
           T  F   S    P+  + L  +   +     +  +I G+ D+          N +LSL+R
Sbjct: 293 TVFFKIGSDKLSPQEEMNLSYLASKMKEFPNMTYTINGYADS---ATGTPSINQKLSLER 349

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFA 316
           A +   +L+K  G+S DR+S  +G  
Sbjct: 350 AQAVKDLLVKKYGISADRLSVAAGGG 375


>gi|260432019|ref|ZP_05785990.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415847|gb|EEX09106.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 518

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS P  ++   +Q++ + L         +   G +D       A  N R++L RA 
Sbjct: 411 FEPGSSRPDAQSRSNIQQLAQALEAGQYDGRKLVFVGFSDG---DGPAESNARIALRRAQ 467

Query: 294 SAYQVLMKS---GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +    ++ +    V +     + GF         D      ANRR++I V
Sbjct: 468 TVRNAVLAAVQTSVPDSVGISVEGFGEAMPLACDDTDWGRKANRRVEIWV 517


>gi|224458593|gb|ACN43175.1| major outer membrane protein OmpAI [Aeromonas veronii]
          Length = 327

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 212 LFAFGKSTLKPEGVAALNTLYQQVVDVQPKDGSAVVVGYTD--RIGSDAY-NLKLSEARA 268

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDILV 338
            +    L+  G+   ++  I G         +   +           + +RR+++ V
Sbjct: 269 RTVADFLVGKGLPAGKV-AIEGRGEANPVTGTQCNSVKGKAQLISCLAPDRRVEVRV 324


>gi|332754029|gb|EGJ84401.1| ompA family protein [Shigella flexneri K-671]
 gi|333015875|gb|EGK35211.1| ompA family protein [Shigella flexneri K-304]
          Length = 127

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A          G          G        ++      + NRR+ +++
Sbjct: 76  ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 124


>gi|34556944|ref|NP_906759.1| lipoprotein precursor [Wolinella succinogenes DSM 1740]
 gi|34482659|emb|CAE09659.1| LIPOPROTEIN PRECURSOR [Wolinella succinogenes]
          Length = 170

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF 277
           ++ ++  +  Q  +  FD        +   V+    +VL         + I G+TD    
Sbjct: 50  KSALIRELESQLKSVYFDFDKFNIRADMQPVVDGDAKVLTSAKAKGLTVKIEGNTDEW-- 107

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
                 N+ L L RA +    L+  GV + +   IS +   +           + NRR+D
Sbjct: 108 -GTDEYNYALGLKRAVAVRDALVAKGVDQSKTMLIS-YGESKPVCQEKSKECWAKNRRVD 165

Query: 336 ILVED 340
             +  
Sbjct: 166 FKLLP 170


>gi|320177022|gb|EFW52043.1| Integral membrane protein YfiB [Shigella dysenteriae CDC 74-1112]
          Length = 127

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   LA +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLASTGITHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|254564113|ref|YP_003071208.1| hypothetical protein METDI5803 [Methylobacterium extorquens DM4]
 gi|254271391|emb|CAX27404.1| Conserved hypothetical protein; putative OmpA family member
           [Methylobacterium extorquens DM4]
          Length = 717

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  +      EV  I G+TDA        DN  LS  R
Sbjct: 596 FDTGSFTVTPDQAKRLSTIAEAINRTIKDNPQEVFLIEGYTDAV---GSDIDNLSLSDRR 652

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL ++           G+    LK+ +   N  NRR+ +
Sbjct: 653 AQSVASVLTQNFQVPPENLTTQGYGEQYLKVNTQEANRENRRVTV 697


>gi|167561407|ref|ZP_02354323.1| cytochrome c oxidase, subunit II [Burkholderia oklahomensis EO147]
          Length = 505

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +        N  L+  RA + 
Sbjct: 409 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKTGSAGA---NAELAKRRAQAV 465

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++E+RI       I+G A  +            RR++I
Sbjct: 466 RDALKAAGIAEERIILKKPETITGGADAKEA----------RRVEI 501


>gi|149185618|ref|ZP_01863934.1| hypothetical protein ED21_21374 [Erythrobacter sp. SD-21]
 gi|148830838|gb|EDL49273.1| hypothetical protein ED21_21374 [Erythrobacter sp. SD-21]
          Length = 162

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        E    LQ   +  +    V  +I GH D    R     N  L   RA +A
Sbjct: 60  FDTDRYNIDAEDSAKLQTQAQYFSQYPNVNFTIEGHADE---RGTREYNLALGERRANAA 116

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L+  G+   RI  IS G        +++   + NRR
Sbjct: 117 KNYLVSLGIPASRIRTISYGKERPVALGSNEAAWAQNRR 155


>gi|330893498|gb|EGH26159.1| ompA family protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 77

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326
           I G+TD++      + N  LS  RA S    L   GV +  +  + G    +   ++   
Sbjct: 1   IVGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADV 56

Query: 327 -MNSANRRIDILVEDRQG 343
              + NRR+++ ++   G
Sbjct: 57  NGRAQNRRVEVNLKPIPG 74


>gi|167568634|ref|ZP_02361508.1| cytochrome c oxidase, subunit II [Burkholderia oklahomensis C6786]
          Length = 505

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +        N  L+  RA + 
Sbjct: 409 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKTGSAGA---NAELAKRRAQAV 465

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++E+RI       I+G A  +            RR++I
Sbjct: 466 RDALKAAGIAEERIILKKPETITGGADAKEA----------RRVEI 501


>gi|322833830|ref|YP_004213857.1| peptidoglycan-associated lipoprotein [Rahnella sp. Y9602]
 gi|321169031|gb|ADW74730.1| peptidoglycan-associated lipoprotein [Rahnella sp. Y9602]
          Length = 170

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 205 GLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           GL +    +     +     + +  + + N   F         E   +L      L  + 
Sbjct: 37  GLNSGAGTENANMSSEEQARLQMQELQKNNIVYFGLDKYDVSSEFAQMLDAHAAFLRSNP 96

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLK 321
              +++ GH D    R     N  L   RA +    L   GVS D+IS +S G     + 
Sbjct: 97  SYKVTVEGHADE---RGTPEYNIALGERRATAVKMYLQGKGVSADQISIVSYGKEKPAVL 153

Query: 322 IASDPMNSANRR 333
              +   + NRR
Sbjct: 154 GHDEAAYAKNRR 165


>gi|270339928|ref|ZP_06006481.2| outer membrane protein [Prevotella bergensis DSM 17361]
 gi|270333294|gb|EFA44080.1| outer membrane protein [Prevotella bergensis DSM 17361]
          Length = 376

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
           R    F  +           + +I   L  + +  +S+ G+ DA    N   D  RL+  
Sbjct: 274 RRDVFFTINKYAIRAAEQSKIDEIVSFLKENPDATVSVTGYADAGTGNNTIND--RLAAQ 331

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA S  + +   G+S +RI   S  A  +    ++     N R+ I++
Sbjct: 332 RAASVVKAIKDKGISANRIKSDSKGARVQPFAENN----KN-RVSIMI 374


>gi|219870536|ref|YP_002474911.1| lipoprotein Plp4/outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Haemophilus
           parasuis SH0165]
 gi|219690740|gb|ACL31963.1| lipoprotein Plp4/outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Haemophilus
           parasuis SH0165]
          Length = 281

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD    I   +   V+  + E L  S  E + + G+ D          N  LS  R
Sbjct: 140 GDFLFDFDKDILTTKGREVVDDVAEQLKSSGAEKVKLVGYADRL---GSEEYNLDLSQRR 196

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
           A      L++ G+    I  +  G A+       +   +       NRR++I
Sbjct: 197 ANMVKARLVEQGIKVP-IEAVGYGKANQVKACDGESGQALRDCLRPNRRVEI 247


>gi|146342457|ref|YP_001207505.1| hypothetical protein BRADO5616 [Bradyrhizobium sp. ORS278]
 gi|146195263|emb|CAL79288.1| hypothetical protein; putative signal peptide [Bradyrhizobium sp.
           ORS278]
          Length = 411

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 236 MFDKSSS------IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           +F   S+               + KI    A +   + + GHT A+ +  +   N RLS+
Sbjct: 298 LFKPGSTLFYTDPEVRAPYQAWIGKIARRTAANHVCLEVAGHTSATGYSGV---NDRLSV 354

Query: 290 DRAYSAY-QVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVED 340
            RA     Q+L +      R+   SG     + +     DP ++ +RR+++ + +
Sbjct: 355 LRAAYVKDQILAEDKGLAGRLIA-SGRGSREMIVGTGRDDPSDALDRRVELRIIN 408


>gi|24373749|ref|NP_717792.1| OmpA family protein [Shewanella oneidensis MR-1]
 gi|24348129|gb|AAN55236.1|AE015661_6 OmpA family protein [Shewanella oneidensis MR-1]
          Length = 269

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 5/223 (2%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
             ++ E++   L            +             T + +S+   E   +   + ++
Sbjct: 42  TIEQEEDDGEALIGLGGGALLGALVGGPVGAVVGGITGTLIGQSVADTELVSVTLKNPQQ 101

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242
            +A++R++      K+++S        +  K +         L+S +       F   SS
Sbjct: 102 HIAVQRQQVTSLTVKQLASEQRAAEYASTQKHLDALLAEQQQLLSELALGMNVQFRTGSS 161

Query: 243 IPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
               + +  L  +  V+  S+E  + ++G+ +    R   RDN  LS  R       L++
Sbjct: 162 ELEADFLPQLDNVATVMKRSSESNLELKGYAER---RGDWRDNQSLSEHRLLEVRDYLIQ 218

Query: 302 SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
            GV+  R+ ++  G A    +      + ++RR+ + +   QG
Sbjct: 219 QGVAPARMTTQALGAAMSLNEQLDSESDVSDRRVTLTIPPTQG 261


>gi|323143404|ref|ZP_08078089.1| putative outer membrane protein A [Succinatimonas hippei YIT 12066]
 gi|322416809|gb|EFY07458.1| putative outer membrane protein A [Succinatimonas hippei YIT 12066]
          Length = 329

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S    E +  +  + + +           ++G+TD     + A  N  LS  RA
Sbjct: 211 LFPFDGSSLCEEGVKAVNDVVDSVNAKNIQNAAYDVKGYTD--RIGSEAY-NQTLSEKRA 267

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---------RRIDILV 338
            +    L  +GV+ ++++ ++G                N         RR+++ V
Sbjct: 268 QAVADQLQAAGVAPEQLT-VTGMGEADPVSTGCEGLRGNKLVDCLAPDRRVELSV 321


>gi|182414999|ref|YP_001820065.1| OmpA/MotB domain-containing protein [Opitutus terrae PB90-1]
 gi|177842213|gb|ACB76465.1| OmpA/MotB domain protein [Opitutus terrae PB90-1]
          Length = 197

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 228 IIDQRN--TPMFDK-----SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
           II+  N    MF+        S         LQK  + +    E  I + GH D   +R 
Sbjct: 67  IIEDANSIRGMFEPVYFDFDKSDIKQAERAKLQKAADYMKQHPEQRILLEGHCD---WRG 123

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            A  N  L   RA +A + L  S    +RI  +S  +    +   D   + +RR+DI++ 
Sbjct: 124 TAEYNLGLGDRRANAAKRYL-SSLAPAERIETLSKGSLDAAQNGDDAAMAKDRRVDIVIL 182


>gi|319945287|ref|ZP_08019549.1| OmpA domain protein [Lautropia mirabilis ATCC 51599]
 gi|319741857|gb|EFV94282.1| OmpA domain protein [Lautropia mirabilis ATCC 51599]
          Length = 477

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   SS   P     LQ++G  L  +   + + G+ D  P  + A  N  LS  RA + 
Sbjct: 376 FFKSGSSSLSPAETRRLQQLGACLGRTAW-VRVTGYAD--PRYSAAY-NKTLSERRARAV 431

Query: 296 YQVLMKSGVSEDRISKI-SGFAHHRLKIASD-PMNSANRRIDILV 338
              + + G S  RI+ + +G    R K+ +D       RR+DILV
Sbjct: 432 AGAISEGGFSSARITVVGAGKTSPRTKVRADKATLQRARRVDILV 476


>gi|90579127|ref|ZP_01234937.1| hypothetical protein VAS14_05458 [Vibrio angustum S14]
 gi|90439960|gb|EAS65141.1| hypothetical protein VAS14_05458 [Vibrio angustum S14]
          Length = 166

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD   ++  PE I  L      +   +  I I GHTD   ++     N  LSL R++   
Sbjct: 63  FDFDKAVLKPEDIKELDDFIAKIQLLSGDILIAGHTD---YQGSDSYNEALSLRRSHVIE 119

Query: 297 QVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NSANRR 333
           + L    + E     ++  F      +    +  N+ NRR
Sbjct: 120 RYLKAR-IDESHYHFEVKYFGEKNPIVKGHSLKANALNRR 158


>gi|6977946|emb|CAB75338.1| OMP 16 protein [Pasteurella multocida]
          Length = 130

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 20  DLQQRYNTVYFGFDKYNIEGEYVQILDAHAAFLNATPATKVVVEGNTDE---RGTPEYNI 76

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 77  ALGQRRADAVKHYLSAKGVQAGQVSTVS-YGEEKPAVLGHDEAAYSKNRR 125


>gi|103485822|ref|YP_615383.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
 gi|98975899|gb|ABF52050.1| OmpA/MotB [Sphingopyxis alaskensis RB2256]
          Length = 170

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD        +    LQ   + L  +    +++ GH D    R     N  L   R
Sbjct: 63  DRIFFDFDQYNVDAQDQATLQSQAQWLQRNPAVRVTLEGHADE---RGTRDYNIALGERR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338
           A +A   L   G+   RI+ IS        I S+    + NRR + +++
Sbjct: 120 ANAAKNYLASLGIDPSRINVISYGKERPAAIGSNEEAWAQNRRAVTVVI 168


>gi|284007554|emb|CBA73076.1| outer membrane protein A [Arsenophonus nasoniae]
          Length = 353

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ +     P   V L K+   L +       + + G+TD     + +  N  LS
Sbjct: 227 RSDVLFEFNKHTLKPAGKVELDKLYSELTNLDPTQGRVMVLGYTD--RIGSPSY-NKPLS 283

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA+     L+  G+  + IS   G         S      P  +  N     RR++I 
Sbjct: 284 QKRAHEVMSYLISKGIPANAISS-QGRGEENPVTGSTCNNVKPRAALINCLAPDRRVEIE 342

Query: 338 VE 339
           ++
Sbjct: 343 IQ 344


>gi|237748798|ref|ZP_04579278.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes
           OXCC13]
 gi|229380160|gb|EEO30251.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes
           OXCC13]
          Length = 169

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S +   +   V+Q   + L  H    + I+G+TD    R     N  L   RA + 
Sbjct: 68  FDFDSFVVSSQYEPVVQAHAKYLNSHKDRKVVIQGNTDD---RGGREYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GVS+ +I  +S G    +    ++   + NRR DI+
Sbjct: 125 RKSMNLMGVSDSQIEAVSFGKEKPKATGNNEAAWAENRRADIV 167


>gi|300722575|ref|YP_003711865.1| outer membrane protein 3a [Xenorhabdus nematophila ATCC 19061]
 gi|218157851|gb|ACK58677.1| OpnT [Xenorhabdus nematophila]
 gi|297629082|emb|CBJ89667.1| outer membrane protein 3a (II*;G;d) [Xenorhabdus nematophila ATCC
           19061]
          Length = 369

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 32/135 (23%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + S   PE    L  +   LA        + + G+TD          N  LS
Sbjct: 239 RSDVLFNFNKSTLKPEGQQELDNLYNQLAKIDPTQGNVVVIGYTDRI---GSQNFNLPLS 295

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+  + I          ++G          +L     P     RR+
Sbjct: 296 HKRAQSVVDYLVAKGIPANSIQAEGRGKESPVTGSTCDNIKVRTKLIDCLAPD----RRV 351

Query: 335 --------DILVEDR 341
                   +++++ +
Sbjct: 352 IINIQGTKEVIIQPK 366


>gi|251733529|emb|CAR82514.1| pal [Ensifer adhaerens]
          Length = 87

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + LA      I+I GH D    R     N  L   RA S   
Sbjct: 1   TDSTSIRADAQQTLARQAQWLAKYPNYAITIEGHADE---RGTREYNLALGARRAASTRD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLVSQGVPANRMKTISYGKEKPVAVCDD 85


>gi|86132229|ref|ZP_01050824.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85817148|gb|EAQ38331.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 674

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        ++ VVL ++  +++ +    + I+ HTD+   R     N  LS +RA + 
Sbjct: 567 FDFDLYSIREDSQVVLDELAAKLIKYKRIKMKIQSHTDS---RGPEAYNVPLSQNRAKAT 623

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRR 333
           +  L++ G+   RI +  G+ + +  +       ++  +  NRR
Sbjct: 624 FDYLVEKGIDPTRI-QYQGYGNSQPVVECPAGQCTEEEHQLNRR 666


>gi|239950061|gb|ACS36762.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 282

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 187 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 243

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    ++  GV+   ++ + G+        +
Sbjct: 244 ETVANYIVSKGVNPANVTAV-GYGEANPVTGN 274


>gi|118578838|ref|YP_900088.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501548|gb|ABK98030.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 687

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FD +          ++ KI        +  +SI GHTD          N +LS  RA +
Sbjct: 578 LFDFNKDTVSGLNQEIVNKIVTRFKSLPQASMSIVGHTDNI---GSESYNLKLSQRRAAA 634

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
            Y++L  + G       + SG         +      + NR + I +E
Sbjct: 635 VYKLLTAAYGEPVGERIRFSGVGQGSPLFDNQTPEGRAFNRTVTITLE 682



 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKS 302
             +   +L  IG+ LA +    I++ G  D S           LS  RA +    L    
Sbjct: 357 TEKYHQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTG---LSTRRAEAVKTYLGTIW 413

Query: 303 GVSEDRISKISGFAHHRLKIASDPMN----SANRRIDIL 337
            ++ +RI +I   A +  K+ S   +    + NRR++I+
Sbjct: 414 NIAPERI-RIE--ARNLPKMPSSSSSQEGQAENRRVEIV 449


>gi|300722398|ref|YP_003711684.1| hypothetical protein XNC1_1421 [Xenorhabdus nematophila ATCC 19061]
 gi|297628901|emb|CBJ89484.1| required for outer membrane integrity, uptake of group A colicins,
           and translocation of phage DNA [Xenorhabdus nematophila
           ATCC 19061]
          Length = 176

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
             +   N   F         E   +L K    L  +    ++I GH D    R     N 
Sbjct: 66  QELQNNNIVYFGFDKYDINSEFAQMLDKHAAFLRTNPSVKVTIEGHADE---RGTPEYNI 122

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            L   RA +    L   GVS D+++ +S G     +    +   + NRR  I+
Sbjct: 123 ALGERRANAVKMYLQGKGVSADQLAIVSYGKEKPAVLGHDEAAYAKNRRAVIV 175


>gi|218549686|ref|YP_002383477.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           fergusonii ATCC 35469]
 gi|218357227|emb|CAQ89862.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           fergusonii ATCC 35469]
 gi|324114316|gb|EGC08285.1| peptidoglycan lipoprotein [Escherichia fergusonii B253]
 gi|325498076|gb|EGC95935.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           fergusonii ECD227]
          Length = 173

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|3282021|emb|CAA07454.1| outer membrane protein [Haemophilus sp.]
          Length = 360

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +   P+    L  I   +A      +++ G+TD     + A +  +LS  RA + 
Sbjct: 247 FAFGKANLKPQAQAALDGIYGEIAQVNSAKVAVAGYTD--RIGSDAFNV-KLSQQRAETV 303

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321
               +  GVS D IS  +G+      
Sbjct: 304 ANYFVAKGVSADAISA-TGYGKANPV 328


>gi|299133120|ref|ZP_07026315.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
 gi|298593257|gb|EFI53457.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
          Length = 345

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I +     + H+ + +  I GHTDA        DN  LS  R
Sbjct: 227 FETGSWDISPDQAAKLQVIADGMNRAIQHNPQTVFLIEGHTDAV---GNDVDNLSLSDRR 283

Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325
           A SA ++L  + GV  + ++   G+    LK+ SD
Sbjct: 284 AESAAELLTQQFGVPAENLTS-QGYGEQYLKVPSD 317


>gi|283786225|ref|YP_003366090.1| outer membrane lipoprotein [Citrobacter rodentium ICC168]
 gi|282949679|emb|CBG89298.1| outer membrane lipoprotein [Citrobacter rodentium ICC168]
          Length = 160

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +T +FDK+      ++   +Q +   LA        + GHTD          N  LSL R
Sbjct: 52  DTILFDKNDYTLRAQSRQQIQAMAARLASVGLKHARMDGHTDNY---GEESYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        +            G        ++      + NRR+ +++
Sbjct: 109 ANVVADAWAEGAQIPRSNLTTQGLGKKYPIASNKTAKGRAENRRVAVVI 157


>gi|251733523|emb|CAR82511.1| pal [Ensifer adhaerens]
 gi|251733525|emb|CAR82512.1| pal [Ensifer adhaerens]
 gi|251733527|emb|CAR82513.1| pal [Ensifer adhaerens]
          Length = 87

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + LA      I+I GH D    R     N  L   RA S   
Sbjct: 1   TDSTSIRADAQQTLARQAQWLAKYPNYAITIEGHADE---RGTREYNLALGARRAASTRD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLISQGVPSNRMKTISYGKEKPVAVCDD 85


>gi|294635647|ref|ZP_06714122.1| outer membrane protein A [Edwardsiella tarda ATCC 23685]
 gi|291090994|gb|EFE23555.1| outer membrane protein A [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 228 KSDVLFNFNKYTLKAEGRQALDQLYTQLSSMDPKDGSVVVLGYTD--RIGSDQY-NLKLS 284

Query: 289 LDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASD---PMNS-AN-----RRIDILV 338
             RA +    L+  G+  D+I ++  G A        D   P  +  N     RR+ I V
Sbjct: 285 KQRAQTVVDYLVSKGIPADKITARGMGKADPVTGATCDNVKPRAALINCLAPDRRVVIEV 344

Query: 339 E 339
           +
Sbjct: 345 K 345


>gi|301155739|emb|CBW15207.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           parainfluenzae T3T1]
          Length = 156

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           T  G  +  +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 38  TFGGYSVEDLQQRYNTVYFGFDKFNIEGEYVQILDAHAAYLNATPASKVVVEGNTDE--- 94

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 95  RGTPEYNIALGQRRADAVKGFLAGKGVDAGKVSTVS-YGEEKPAVLGHDEAAYSKNRR 151


>gi|291616741|ref|YP_003519483.1| Pal [Pantoea ananatis LMG 20103]
 gi|291151771|gb|ADD76355.1| Pal [Pantoea ananatis LMG 20103]
          Length = 192

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         +   +L +    L  +    ++I GH D    R     N  L   RA + 
Sbjct: 92  FGLDKYDVQSDYAQMLDQHANFLRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAV 148

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D++S +S +   +  +    +   + NRR
Sbjct: 149 KMYLQGKGVSADQMSIVS-YGKEKPAVLGHDEAAYAKNRR 187


>gi|264680074|ref|YP_003279983.1| cytochrome C oxidase subunit II [Comamonas testosteroni CNB-2]
 gi|262210589|gb|ACY34687.1| cytochrome c oxidase, subunit II [Comamonas testosteroni CNB-2]
          Length = 524

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 24/112 (21%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+   S+   +    +++  E   AH    I++ G  D++     A  N  L+ +RA
Sbjct: 424 QVFFETGKSVLDDKAQAAVKRAAEYWSAHKDGKIALSGFVDST---GNADKNAELAKERA 480

Query: 293 YSAYQVLMKSGVSEDR--------ISKISGFAHHRLKIASDPMNSANRRIDI 336
            +  ++L  SG++ DR        I+  +G A  +            RR+DI
Sbjct: 481 KAVAKLLEDSGIAGDRIELRKPETITAAAG-ADQQA-----------RRVDI 520


>gi|85710723|ref|ZP_01041787.1| probable peptidoglycan-associated lipoprotein precursor
           [Erythrobacter sp. NAP1]
 gi|85687901|gb|EAQ27906.1| probable peptidoglycan-associated lipoprotein precursor
           [Erythrobacter sp. NAP1]
          Length = 210

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
           +I GH D    R     N  L   RA +A   L+  GVS +RI  +S      + +AS P
Sbjct: 139 TIEGHCDE---RGTREYNLALGERRANAAKNYLVSLGVSPNRIRTVSYGKERPVALASTP 195

Query: 327 MN-SANRR-IDILV 338
              S NRR   I++
Sbjct: 196 AAWSQNRRAASIII 209


>gi|299148152|ref|ZP_07041214.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_23]
 gi|298512913|gb|EFI36800.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_23]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|295088071|emb|CBK69594.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Bacteroides xylanisolvens XB1A]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|294809732|ref|ZP_06768419.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294443066|gb|EFG11846.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 390

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 280 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 337

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 338 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 371


>gi|293369508|ref|ZP_06616087.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292635393|gb|EFF53906.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
          Length = 390

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 280 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 337

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 338 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 371


>gi|260171997|ref|ZP_05758409.1| major outer membrane protein OmpA [Bacteroides sp. D2]
 gi|315920310|ref|ZP_07916550.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694185|gb|EFS31020.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|237719069|ref|ZP_04549550.1| major outer membrane protein OmpA [Bacteroides sp. 2_2_4]
 gi|229451448|gb|EEO57239.1| major outer membrane protein OmpA [Bacteroides sp. 2_2_4]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|237714325|ref|ZP_04544806.1| major outer membrane protein OmpA [Bacteroides sp. D1]
 gi|262408158|ref|ZP_06084705.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645116|ref|ZP_06722841.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|298480179|ref|ZP_06998377.1| major outer membrane protein OmpA [Bacteroides sp. D22]
 gi|229445489|gb|EEO51280.1| major outer membrane protein OmpA [Bacteroides sp. D1]
 gi|262353710|gb|EEZ02803.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639540|gb|EFF57833.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|298273460|gb|EFI15023.1| major outer membrane protein OmpA [Bacteroides sp. D22]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNATYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|320182481|gb|EFW57375.1| Integral membrane protein YfiB [Shigella boydii ATCC 9905]
          Length = 127

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+    LPE+   +Q +   L  +      + GHTD          N  LSL R
Sbjct: 19  DAILFAKNDYKLLPESQQQIQTMAAKLTSTGLTHARMDGHTDNY---GEDSYNEGLSLKR 75

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           A          G          G        ++      + NRR+ +++  
Sbjct: 76  ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126


>gi|110637015|ref|YP_677222.1| outer membrane protein A [Cytophaga hutchinsonii ATCC 33406]
 gi|110279696|gb|ABG57882.1| outer membrane protein A [Cytophaga hutchinsonii ATCC 33406]
          Length = 734

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D + +    +    L ++  +L  +    I +  HTD    R     N +LS +RA + 
Sbjct: 627 YDYNKATIRQDAKPALDQLMNLLTENPTMKIQLNSHTDC---RGSDVYNMKLSQNRARAV 683

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRRIDILV 338
              L++ G+S DR+ K  G+              ++     NRR +  +
Sbjct: 684 VTYLVERGISADRL-KFKGYGETLPVTNCACTECTEQQYQDNRRTEFQI 731


>gi|332885102|gb|EGK05354.1| hypothetical protein HMPREF9456_02853 [Dysgonomonas mossii DSM
           22836]
          Length = 401

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           +KI  +   ++   +        T +     + +  N   F+   S   PE+   L KI 
Sbjct: 248 EKIIQSPPQIIEKIVEIPATVVETPS---TELCELFNNIYFEFDKSDIRPESNETLDKIA 304

Query: 257 EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            +L ++T +   I G+TDA   R  A  N  LS  RA S  + L   GV  D I K  G 
Sbjct: 305 NILNNNTAKKYLITGYTDA---RGSAEYNIGLSRRRAASVIKALEDRGVPTD-ILKSRGV 360

Query: 316 A 316
            
Sbjct: 361 G 361


>gi|307246787|ref|ZP_07528853.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307251124|ref|ZP_07533047.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307255770|ref|ZP_07537572.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260222|ref|ZP_07541930.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852258|gb|EFM84497.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306856856|gb|EFM88989.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306861233|gb|EFM93225.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865669|gb|EFM97549.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 364

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L  +   + ++      I + G+TD          N +LS  RA
Sbjct: 244 LFAFGKSNLKPAAATALDAMQTEINNAGLSNAAIQVNGYTDRI---GKEASNLKLSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
            +    ++  G     ++ + G+        +               + +RR+++ V+
Sbjct: 301 ETVANYIVSKGAPAANVTAV-GYGEANPVTGATCDKVKGRKALIACLAPDRRVEVQVQ 357


>gi|90409122|ref|ZP_01217243.1| outer membrane protein A [Psychromonas sp. CNPT3]
 gi|90309773|gb|EAS37937.1| outer membrane protein A [Psychromonas sp. CNPT3]
          Length = 318

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           ++  +FD + +  L E   +   I  +  +    + + G+TD +        N +LS  R
Sbjct: 208 QSRILFDFAQTDLLLE-HDLDIAITRLTTYKKATVVLTGYTDNT---GKETFNLQLSKQR 263

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
             S  + L+  GV   +I+++         I +D       NRR+DIL+
Sbjct: 264 VQSIKKTLLDRGVQASQITEV-YKGESDPIIGNDSREHRHLNRRVDILL 311


>gi|54308335|ref|YP_129355.1| hypothetical protein PBPRA1142 [Photobacterium profundum SS9]
 gi|46912763|emb|CAG19553.1| hypothetical protein PBPRA1142 [Photobacterium profundum SS9]
          Length = 168

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  PE I  L   I +V+      I I GHTD   ++     N +LS  R+   
Sbjct: 65  FDFDKSILKPEDIAELDDFIAKVIN-LKGHIVIAGHTD---YQGSDDYNEKLSFRRSTVI 120

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR-IDIL 337
            Q L      E+   +++ F  +   + +  +  N+ NRR I I 
Sbjct: 121 QQYLAARIPVENYTFEVAYFGENNPIVKAHSLKANALNRRGIVIF 165


>gi|83953282|ref|ZP_00962004.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83842250|gb|EAP81418.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 317

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++         L  +  VL    +  I + GHTD+       ++N  LS  RA + 
Sbjct: 212 FGTGTAALGQGEFDALANLAAVLKDQPDLRIVLVGHTDSV---GGLQNNIALSRSRAAAV 268

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            + L+ + G++ DRI    G  +     ++        NRR++ ++  
Sbjct: 269 RRRLITAHGIAGDRIEA-QGMGYLSPIASNQTKAGRDANRRVEAVLLP 315


>gi|218533090|ref|YP_002423906.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
 gi|218525393|gb|ACK85978.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4]
          Length = 723

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  +      EV  I G+TDA        DN  LS  R
Sbjct: 602 FDTGSFTVTPDQAKRLSTIAEAINRTIKDNPQEVFLIEGYTDAV---GSDIDNLSLSDRR 658

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL ++           G+    LK+ +   N  NRR+ +
Sbjct: 659 AQSVASVLTQNFQVPPENLTTQGYGEQYLKVNTQDANRENRRVTV 703


>gi|91225058|ref|ZP_01260280.1| flagellar motor protein [Vibrio alginolyticus 12G01]
 gi|91190001|gb|EAS76272.1| flagellar motor protein [Vibrio alginolyticus 12G01]
          Length = 38

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWI 53
            D  P  L  W   +AD M++LM FF+++  
Sbjct: 7  KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLS 38


>gi|120611464|ref|YP_971142.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120589928|gb|ABM33368.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1]
          Length = 177

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +    +    +  +   +      + I G  DA+     A  N  L+  RA +  
Sbjct: 81  FASGRADLTADAAPAIADVVRAVKDGNRRVVISGFHDAT---GDAAANAGLAKQRAQAVR 137

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             L+ +G  EDRI               D   +  RR+++ +
Sbjct: 138 DALVAAGAPEDRIEL-----RKPELAQGDGNAAEARRVEVTL 174


>gi|146312725|ref|YP_001177799.1| putative outer membrane lipoprotein [Enterobacter sp. 638]
 gi|145319601|gb|ABP61748.1| OmpA/MotB domain protein [Enterobacter sp. 638]
          Length = 161

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F K+ S    E+   +Q +  +LA +      + GHTD          N  LSL R
Sbjct: 53  DKILFGKNESQLRAESEQQIQSMASLLAGTGLTHARMDGHTDNY---GEESYNQSLSLKR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        K            G        ++      + NRR+ +++
Sbjct: 110 ANVVADAWAKGANIPRSNLTTQGLGKKYPVASNSTSQGRAENRRVAVVI 158


>gi|82776019|ref|YP_402366.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           dysenteriae Sd197]
 gi|309786420|ref|ZP_07681046.1| peptidoglycan-associated lipoprotein [Shigella dysenteriae 1617]
 gi|81240167|gb|ABB60877.1| peptidoglycan-associated lipoprotein [Shigella dysenteriae Sd197]
 gi|308925814|gb|EFP71295.1| peptidoglycan-associated lipoprotein [Shigella dysenteriae 1617]
          Length = 173

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|15800457|ref|NP_286469.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 EDL933]
 gi|15830030|ref|NP_308803.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. Sakai]
 gi|16128716|ref|NP_415269.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30062096|ref|NP_836267.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           flexneri 2a str. 2457T]
 gi|56479690|ref|NP_706493.2| peptidoglycan-associated outer membrane lipoprotein [Shigella
           flexneri 2a str. 301]
 gi|74311265|ref|YP_309684.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           sonnei Ss046]
 gi|82543168|ref|YP_407115.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           boydii Sb227]
 gi|89107599|ref|AP_001379.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K-12 substr. W3110]
 gi|110804633|ref|YP_688153.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           flexneri 5 str. 8401]
 gi|157157682|ref|YP_001461902.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli E24377A]
 gi|157160223|ref|YP_001457541.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli HS]
 gi|170020914|ref|YP_001725868.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli ATCC 8739]
 gi|170080408|ref|YP_001729728.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683065|ref|YP_001742852.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli SMS-3-5]
 gi|187731438|ref|YP_001879398.1| peptidoglycan-associated outer membrane lipoprotein [Shigella
           boydii CDC 3083-94]
 gi|188492398|ref|ZP_02999668.1| peptidoglycan-associated lipoprotein [Escherichia coli 53638]
 gi|189010018|ref|ZP_02804243.2| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189402679|ref|ZP_02784049.2| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189402925|ref|ZP_03006899.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404924|ref|ZP_02811914.2| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC869]
 gi|194430753|ref|ZP_03063168.1| peptidoglycan-associated lipoprotein [Escherichia coli B171]
 gi|194440229|ref|ZP_03072261.1| peptidoglycan-associated lipoprotein [Escherichia coli 101-1]
 gi|195936736|ref|ZP_03082118.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. EC4024]
 gi|208815415|ref|ZP_03256594.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822195|ref|ZP_03262514.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396423|ref|YP_002269375.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917992|ref|YP_002292076.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli SE11]
 gi|217326423|ref|ZP_03442507.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553268|ref|YP_002386181.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli IAI1]
 gi|218694165|ref|YP_002401832.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 55989]
 gi|218699113|ref|YP_002406742.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli IAI39]
 gi|218704068|ref|YP_002411587.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli UMN026]
 gi|238900006|ref|YP_002925802.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli BW2952]
 gi|253774288|ref|YP_003037119.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160811|ref|YP_003043919.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B str. REL606]
 gi|254791898|ref|YP_003076735.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. TW14359]
 gi|256021183|ref|ZP_05435048.1| peptidoglycan-associated outer membrane lipoprotein [Shigella sp.
           D9]
 gi|256023656|ref|ZP_05437521.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           sp. 4_1_40B]
 gi|260842947|ref|YP_003220725.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O103:H2 str. 12009]
 gi|260853976|ref|YP_003227867.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O26:H11 str. 11368]
 gi|260866872|ref|YP_003233274.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O111:H- str. 11128]
 gi|261224452|ref|ZP_05938733.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254556|ref|ZP_05947089.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291281684|ref|YP_003498502.1| Peptidoglycan-associated lipoprotein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403996|ref|ZP_06647990.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli FVEC1412]
 gi|293409125|ref|ZP_06652701.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414026|ref|ZP_06656675.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B185]
 gi|293433009|ref|ZP_06661437.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B088]
 gi|297520454|ref|ZP_06938840.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli OP50]
 gi|298379776|ref|ZP_06989381.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli FVEC1302]
 gi|300816391|ref|ZP_07096613.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 107-1]
 gi|300822970|ref|ZP_07103105.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 119-7]
 gi|300900748|ref|ZP_07118897.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 198-1]
 gi|300907000|ref|ZP_07124669.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 84-1]
 gi|300918402|ref|ZP_07135002.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 115-1]
 gi|300926145|ref|ZP_07141958.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 182-1]
 gi|300929453|ref|ZP_07144921.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 187-1]
 gi|300937786|ref|ZP_07152583.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 21-1]
 gi|300947178|ref|ZP_07161388.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 116-1]
 gi|300957690|ref|ZP_07169879.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 175-1]
 gi|301020787|ref|ZP_07184851.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 69-1]
 gi|301027077|ref|ZP_07190449.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 196-1]
 gi|301305229|ref|ZP_07211327.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 124-1]
 gi|301327934|ref|ZP_07221105.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 78-1]
 gi|301648046|ref|ZP_07247813.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 146-1]
 gi|307137354|ref|ZP_07496710.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli H736]
 gi|307314794|ref|ZP_07594388.1| peptidoglycan-associated lipoprotein [Escherichia coli W]
 gi|309797456|ref|ZP_07691848.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 145-7]
 gi|312970820|ref|ZP_07784999.1| peptidoglycan-associated lipoprotein [Escherichia coli 1827-70]
 gi|331662101|ref|ZP_08363024.1| peptidoglycan-associated lipoprotein [Escherichia coli TA143]
 gi|331667108|ref|ZP_08367973.1| peptidoglycan-associated lipoprotein [Escherichia coli TA271]
 gi|71159616|sp|P0A913|PAL_ECO57 RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|71159617|sp|P0A912|PAL_ECOLI RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|71159618|sp|P0A914|PAL_SHIFL RecName: Full=Peptidoglycan-associated lipoprotein; Flags:
           Precursor
 gi|12513674|gb|AAG55077.1|AE005252_13 peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EDL933]
 gi|41360|emb|CAA46673.1| peptidoglycan-associated lipoprotein [Escherichia coli K-12]
 gi|42257|emb|CAA28771.1| unnamed protein product [Escherichia coli K-12]
 gi|1651333|dbj|BAA35407.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K12 substr. W3110]
 gi|1786962|gb|AAC73835.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13360235|dbj|BAB34199.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           Sakai]
 gi|30040340|gb|AAP16073.1| peptidoglycan-associated lipoprotein [Shigella flexneri 2a str.
           2457T]
 gi|56383241|gb|AAN42200.2| peptidoglycan-associated lipoprotein [Shigella flexneri 2a str.
           301]
 gi|73854742|gb|AAZ87449.1| peptidoglycan-associated lipoprotein [Shigella sonnei Ss046]
 gi|81244579|gb|ABB65287.1| peptidoglycan-associated lipoprotein [Shigella boydii Sb227]
 gi|110614181|gb|ABF02848.1| peptidoglycan-associated lipoprotein [Shigella flexneri 5 str.
           8401]
 gi|157065903|gb|ABV05158.1| peptidoglycan-associated lipoprotein [Escherichia coli HS]
 gi|157079712|gb|ABV19420.1| peptidoglycan-associated lipoprotein [Escherichia coli E24377A]
 gi|169755842|gb|ACA78541.1| peptidoglycan-associated lipoprotein [Escherichia coli ATCC 8739]
 gi|169888243|gb|ACB01950.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170520783|gb|ACB18961.1| peptidoglycan-associated lipoprotein [Escherichia coli SMS-3-5]
 gi|187428430|gb|ACD07704.1| peptidoglycan-associated lipoprotein [Shigella boydii CDC 3083-94]
 gi|188487597|gb|EDU62700.1| peptidoglycan-associated lipoprotein [Escherichia coli 53638]
 gi|189002834|gb|EDU71820.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354292|gb|EDU72711.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363387|gb|EDU81806.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373170|gb|EDU91586.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC869]
 gi|194411203|gb|EDX27610.1| peptidoglycan-associated lipoprotein [Escherichia coli B171]
 gi|194420838|gb|EDX36893.1| peptidoglycan-associated lipoprotein [Escherichia coli 101-1]
 gi|208732063|gb|EDZ80751.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737680|gb|EDZ85363.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157823|gb|ACI35256.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209776378|gb|ACI86501.1| peptidoglycan-associated lipoprotein [Escherichia coli]
 gi|209776380|gb|ACI86502.1| peptidoglycan-associated lipoprotein [Escherichia coli]
 gi|209776382|gb|ACI86503.1| peptidoglycan-associated lipoprotein [Escherichia coli]
 gi|209776384|gb|ACI86504.1| peptidoglycan-associated lipoprotein [Escherichia coli]
 gi|209776386|gb|ACI86505.1| peptidoglycan-associated lipoprotein [Escherichia coli]
 gi|209911251|dbj|BAG76325.1| peptidoglycan-associated lipoprotein [Escherichia coli SE11]
 gi|217322644|gb|EEC31068.1| peptidoglycan-associated lipoprotein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350897|emb|CAU96595.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli 55989]
 gi|218360036|emb|CAQ97583.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli IAI1]
 gi|218369099|emb|CAR16853.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli IAI39]
 gi|218431165|emb|CAR12041.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli UMN026]
 gi|238861988|gb|ACR63986.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli BW2952]
 gi|242376503|emb|CAQ31207.1| pal, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4
           Transport System and The Colicin A Import System
           [Escherichia coli BL21(DE3)]
 gi|253325332|gb|ACT29934.1| peptidoglycan-associated lipoprotein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972712|gb|ACT38383.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B str. REL606]
 gi|253976906|gb|ACT42576.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli BL21(DE3)]
 gi|254591298|gb|ACT70659.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. TW14359]
 gi|257752625|dbj|BAI24127.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O26:H11 str. 11368]
 gi|257758094|dbj|BAI29591.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O103:H2 str. 12009]
 gi|257763228|dbj|BAI34723.1| peptidoglycan-associated outer membrane lipoprotein Pal
           [Escherichia coli O111:H- str. 11128]
 gi|260450105|gb|ACX40527.1| peptidoglycan-associated lipoprotein [Escherichia coli DH1]
 gi|281599943|gb|ADA72927.1| Peptidoglycan-associated lipoprotein precursor [Shigella flexneri
           2002017]
 gi|284920528|emb|CBG33590.1| peptidoglycan-associated lipoprotein [Escherichia coli 042]
 gi|290761557|gb|ADD55518.1| Peptidoglycan-associated lipoprotein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323828|gb|EFE63250.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B088]
 gi|291428582|gb|EFF01607.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli FVEC1412]
 gi|291434084|gb|EFF07057.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli B185]
 gi|291469593|gb|EFF12077.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279474|gb|EFI20982.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli FVEC1302]
 gi|299879411|gb|EFI87622.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 196-1]
 gi|300315608|gb|EFJ65392.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 175-1]
 gi|300355807|gb|EFJ71677.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 198-1]
 gi|300398433|gb|EFJ81971.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 69-1]
 gi|300401221|gb|EFJ84759.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 84-1]
 gi|300414465|gb|EFJ97775.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 115-1]
 gi|300417844|gb|EFK01155.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 182-1]
 gi|300453164|gb|EFK16784.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 116-1]
 gi|300457197|gb|EFK20690.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 21-1]
 gi|300462562|gb|EFK26055.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 187-1]
 gi|300524511|gb|EFK45580.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 119-7]
 gi|300531081|gb|EFK52143.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 107-1]
 gi|300839541|gb|EFK67301.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 124-1]
 gi|300845577|gb|EFK73337.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 78-1]
 gi|301073872|gb|EFK88678.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 146-1]
 gi|306905692|gb|EFN36220.1| peptidoglycan-associated lipoprotein [Escherichia coli W]
 gi|308118980|gb|EFO56242.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 145-7]
 gi|309700963|emb|CBJ00260.1| peptidoglycan-associated lipoprotein [Escherichia coli ETEC H10407]
 gi|310336581|gb|EFQ01748.1| peptidoglycan-associated lipoprotein [Escherichia coli 1827-70]
 gi|313649616|gb|EFS14040.1| peptidoglycan-associated lipoprotein [Shigella flexneri 2a str.
           2457T]
 gi|315059984|gb|ADT74311.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli W]
 gi|315135398|dbj|BAJ42557.1| peptidoglycan-associated lipoprotein precursor [Escherichia coli
           DH1]
 gi|315257660|gb|EFU37628.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 85-1]
 gi|315614617|gb|EFU95259.1| peptidoglycan-associated lipoprotein [Escherichia coli 3431]
 gi|320172956|gb|EFW48184.1| 18K peptidoglycan-associated outer membrane lipoprotein [Shigella
           dysenteriae CDC 74-1112]
 gi|320179418|gb|EFW54375.1| 18K peptidoglycan-associated outer membrane lipoprotein [Shigella
           boydii ATCC 9905]
 gi|320183982|gb|EFW58806.1| 18K peptidoglycan-associated outer membrane lipoprotein [Shigella
           flexneri CDC 796-83]
 gi|320193146|gb|EFW67786.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Escherichia coli O157:H7 str. EC1212]
 gi|320198139|gb|EFW72743.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Escherichia coli EC4100B]
 gi|320637999|gb|EFX07768.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. G5101]
 gi|320643395|gb|EFX12575.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H- str. 493-89]
 gi|320648689|gb|EFX17325.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H- str. H 2687]
 gi|320654327|gb|EFX22380.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320659959|gb|EFX27501.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320664785|gb|EFX31923.1| peptidoglycan-associated outer membrane lipoprotein [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323153743|gb|EFZ39990.1| peptidoglycan-associated lipoprotein [Escherichia coli EPECa14]
 gi|323158793|gb|EFZ44806.1| peptidoglycan-associated lipoprotein [Escherichia coli E128010]
 gi|323163900|gb|EFZ49710.1| peptidoglycan-associated lipoprotein [Shigella sonnei 53G]
 gi|323170862|gb|EFZ56512.1| peptidoglycan-associated lipoprotein [Escherichia coli LT-68]
 gi|323180019|gb|EFZ65575.1| peptidoglycan-associated lipoprotein [Escherichia coli 1180]
 gi|323185098|gb|EFZ70464.1| peptidoglycan-associated lipoprotein [Escherichia coli 1357]
 gi|323379456|gb|ADX51724.1| peptidoglycan-associated lipoprotein [Escherichia coli KO11]
 gi|323938280|gb|EGB34538.1| peptidoglycan-associated lipoprotein [Escherichia coli E1520]
 gi|323942964|gb|EGB39128.1| peptidoglycan lipoprotein [Escherichia coli E482]
 gi|323946993|gb|EGB43007.1| peptidoglycan-associated lipoprotein [Escherichia coli H120]
 gi|323963122|gb|EGB58692.1| peptidoglycan lipoprotein [Escherichia coli H489]
 gi|323967344|gb|EGB62765.1| peptidoglycan lipoprotein [Escherichia coli M863]
 gi|323972028|gb|EGB67248.1| peptidoglycan lipoprotein [Escherichia coli TA007]
 gi|323976278|gb|EGB71368.1| peptidoglycan lipoprotein [Escherichia coli TW10509]
 gi|324020351|gb|EGB89570.1| peptidoglycan-associated lipoprotein [Escherichia coli MS 117-3]
 gi|324116283|gb|EGC10204.1| peptidoglycan lipoprotein [Escherichia coli E1167]
 gi|326341510|gb|EGD65300.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Escherichia coli O157:H7 str. 1044]
 gi|326345729|gb|EGD69468.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Escherichia coli O157:H7 str. 1125]
 gi|327254430|gb|EGE66052.1| peptidoglycan-associated lipoprotein [Escherichia coli STEC_7v]
 gi|331060523|gb|EGI32487.1| peptidoglycan-associated lipoprotein [Escherichia coli TA143]
 gi|331065464|gb|EGI37357.1| peptidoglycan-associated lipoprotein [Escherichia coli TA271]
 gi|332093802|gb|EGI98856.1| peptidoglycan-associated lipoprotein [Shigella boydii 5216-82]
 gi|332096454|gb|EGJ01450.1| peptidoglycan-associated lipoprotein [Shigella dysenteriae 155-74]
 gi|332097640|gb|EGJ02615.1| peptidoglycan-associated lipoprotein [Shigella boydii 3594-74]
 gi|332342078|gb|AEE55412.1| peptidoglycan-associated lipoprotein [Escherichia coli UMNK88]
 gi|332760890|gb|EGJ91178.1| peptidoglycan-associated lipoprotein [Shigella flexneri 4343-70]
 gi|332761270|gb|EGJ91556.1| peptidoglycan-associated lipoprotein [Shigella flexneri 2747-71]
 gi|332763939|gb|EGJ94177.1| peptidoglycan-associated lipoprotein [Shigella flexneri K-671]
 gi|332768160|gb|EGJ98345.1| peptidoglycan-associated lipoprotein [Shigella flexneri 2930-71]
 gi|333007348|gb|EGK26828.1| peptidoglycan-associated lipoprotein [Shigella flexneri VA-6]
 gi|333007878|gb|EGK27354.1| peptidoglycan-associated lipoprotein [Shigella flexneri K-218]
 gi|333010140|gb|EGK29575.1| peptidoglycan-associated lipoprotein [Shigella flexneri K-272]
 gi|333021092|gb|EGK40349.1| peptidoglycan-associated lipoprotein [Shigella flexneri K-227]
 gi|333021585|gb|EGK40835.1| peptidoglycan-associated lipoprotein [Shigella flexneri K-304]
          Length = 173

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|256830358|ref|YP_003159086.1| peptidoglycan-associated lipoprotein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579534|gb|ACU90670.1| peptidoglycan-associated lipoprotein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 176

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F    S    ++  VL +  E+L  H+   + I GH D    R     N  L   R
Sbjct: 69  DRIYFAFDRSELSDQSRQVLAEKAELLKTHAALSLLIEGHCDE---RGTNEYNMALGERR 125

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           A +AY+ L+  G++ DRI+ IS +      +   ++   + NRR
Sbjct: 126 ARAAYEYLVLMGIASDRITIIS-YGEEYPAVPGSNEEAWAKNRR 168


>gi|118474222|ref|YP_891707.1| chemotaxis protein MotB, putative [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413448|gb|ABK81868.1| chemotaxis protein MotB, putative [Campylobacter fetus subsp. fetus
           82-40]
          Length = 334

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 110/316 (34%), Gaps = 29/316 (9%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92
           W I YAD M  L+  F+++           +A            + A     DE N  E+
Sbjct: 14  W-ISYADLMAGLLFVFVLLIGAIVVKYVLTQADLNALRIDLNKKVEALAFSSDELNKKEK 72

Query: 93  SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152
           + ++ I+   +      ++       N+K     ++      +    +E  K   +  + 
Sbjct: 73  AIKDFIEKLQNAKDRNLALSEINALFNEKLAELSIQLGDINSTLRVVNEENKELSSIINL 132

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K + +            E N  L  L+         K+R++DL       +S L    + 
Sbjct: 133 KDEQISDLKIALTQKESEYNSVLADLN-------STKERIKDLGGIKLKVISDL-KQKLG 184

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK---------IGEVLAHST 263
             +  +          +   ++ +FD +S +        L++         + + +  + 
Sbjct: 185 NSIRIDANSGS-----VSLPSSILFDTNSFMLKDSARFDLRRTLKAYFDVLLSDEIRPNI 239

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGFAHHRLK 321
           + I I GHTD+         N  LS  RAY   + +     +E+  +    SG +   L 
Sbjct: 240 DRIVIEGHTDS---DGSYLYNLELSQKRAYEVMKFIYSFYKNEELGKYLIASGRSFSDLV 296

Query: 322 IASDPMN-SANRRIDI 336
             +   +  A+RRI+I
Sbjct: 297 YKNGVEDKEASRRIEI 312


>gi|251733531|emb|CAR82515.1| pal [Ensifer adhaerens]
 gi|251733533|emb|CAR82516.1| pal [Ensifer adhaerens]
 gi|251733535|emb|CAR82517.1| pal [Ensifer adhaerens]
          Length = 87

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + LA      I+I GH D    R     N  L   RA S   
Sbjct: 1   TDSTSIRADAQQTLARQAQWLAKYPNYAITIEGHADE---RGTREYNLALGARRAASTRD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLISQGVPANRMKTISYGKEKPVAVCDD 85


>gi|254253147|ref|ZP_04946465.1| Outer membrane protein [Burkholderia dolosa AUO158]
 gi|124895756|gb|EAY69636.1| Outer membrane protein [Burkholderia dolosa AUO158]
          Length = 182

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 80  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L   GV++ ++  +S     +           + NRR D++
Sbjct: 137 RRALALLGVADSQMEAVS-LGKEKPLATGHDEASWAQNRRADLV 179


>gi|13472197|ref|NP_103764.1| hypothetical protein mlr2412 [Mesorhizobium loti MAFF303099]
 gi|14022942|dbj|BAB49550.1| mlr2412 [Mesorhizobium loti MAFF303099]
          Length = 754

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  SS      +  L+ +     ++L  +  E   I GHTDA         N  LS  R
Sbjct: 639 FEFGSSSISDTEVQKLEGVASAMEKLLKKNPAETFLIEGHTDAV---GTPEANLALSDRR 695

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +  + L  + G+  + ++   G+    LK+ +   N  NRR+ I
Sbjct: 696 AEAVAEALTNAFGIPPENLT-TQGYGEQYLKVNTQAPNRENRRVAI 740


>gi|327393167|dbj|BAK10589.1| peptidoglycan-associated lipoprotein precursor Pal [Pantoea
           ananatis AJ13355]
          Length = 174

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         +   +L +    L  +    ++I GH D    R     N  L   RA + 
Sbjct: 74  FGLDKYDVQSDYAQMLDQHANFLRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D++S +S +   +  +    +   + NRR
Sbjct: 131 KMYLQGKGVSADQMSIVS-YGKEKPAVLGHDEAAYAKNRR 169


>gi|312796781|ref|YP_004029703.1| peptidoglycan-associated lipoprotein [Burkholderia rhizoxinica HKI
           454]
 gi|312168556|emb|CBW75559.1| Peptidoglycan-associated lipoprotein [Burkholderia rhizoxinica HKI
           454]
          Length = 169

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ   + L    +  + I+G+TD    R  +  N  L   RA S 
Sbjct: 68  FDFDSYTVSNEYQPLLQAHAQYLKGHPQRHVLIQGNTDE---RGTSEYNLALGQKRAESV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G          +   + NRR D++
Sbjct: 125 RRTLALLGVNDSQMEAVSLGKEKPAATGHDEASWAQNRRADLV 167


>gi|304395720|ref|ZP_07377603.1| peptidoglycan-associated lipoprotein [Pantoea sp. aB]
 gi|308186084|ref|YP_003930215.1| Peptidoglycan-associated lipoprotein precursor [Pantoea vagans
           C9-1]
 gi|304357014|gb|EFM21378.1| peptidoglycan-associated lipoprotein [Pantoea sp. aB]
 gi|308056594|gb|ADO08766.1| Peptidoglycan-associated lipoprotein precursor [Pantoea vagans
           C9-1]
          Length = 175

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         +   +L +    L  +    ++I GH D    R     N  L   RA + 
Sbjct: 75  FGLDKYDVQSDYAQMLDQHATFLRSNPSYKVTIEGHADE---RGTPEYNIALGERRANAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
              L   GVS D++S +S +   +  +    +   S NRR
Sbjct: 132 KMYLQGKGVSADQMSIVS-YGKEKPAVLGHDEAAYSKNRR 170


>gi|270263786|ref|ZP_06192055.1| peptidoglycan-associated outer membrane lipoprotein [Serratia
           odorifera 4Rx13]
 gi|270042670|gb|EFA15765.1| peptidoglycan-associated outer membrane lipoprotein [Serratia
           odorifera 4Rx13]
          Length = 180

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         E   +L      L ++    +++ GH D    R    
Sbjct: 67  LQMQELQKNNIVYFGLDKYDVSSEFAEMLDAHSAFLRNNPSYKVTVEGHADE---RGTPE 123

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   + NRR
Sbjct: 124 YNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 175


>gi|240141603|ref|YP_002966083.1| hypothetical protein MexAM1_META1p5204 [Methylobacterium extorquens
           AM1]
 gi|240011580|gb|ACS42806.1| Conserved hypothetical protein; putative OmpA family member
           [Methylobacterium extorquens AM1]
          Length = 729

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  +      EV  I G+TDA        DN  LS  R
Sbjct: 608 FDTGSFTVTPDQAKRLSTIAEAINRTIKDNPQEVFLIEGYTDAV---GSDIDNLSLSDRR 664

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL ++           G+    LK+ +   N  NRR+ +
Sbjct: 665 AQSVASVLTQNFQVPPENLTTQGYGEQYLKVNTQDANRENRRVTV 709


>gi|218676259|ref|YP_002395078.1| Outer membrane protein [Vibrio splendidus LGP32]
 gi|218324527|emb|CAV26009.1| Outer membrane protein [Vibrio splendidus LGP32]
          Length = 188

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 16/132 (12%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIP---LPETIVVLQK-----IGEVLAHSTEV--ISIRG 270
           R   +I I  Q +   +DK++       P  + +L +     +G+ L+   +   I I G
Sbjct: 61  RESEVIQIAAQDDVCFYDKATQSLVLNYPTNVYLLDENHKQVLGQYLSLVGDKSKIYIEG 120

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMN 328
           H D+         N  LS  RA      L K     +RI + + +       K+  +   
Sbjct: 121 HADSL---GSKSYNKALSSRRAGQVASYLKKDLHQGNRIVEYA-YGESAPICKVTDNKAT 176

Query: 329 SANRRIDILVED 340
             NRR+ I V+ 
Sbjct: 177 GCNRRVVITVKS 188


>gi|189184227|ref|YP_001938012.1| peptidoglycan-associated lipoprotein [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180998|dbj|BAG40778.1| peptidoglycan-associated lipoprotein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 204

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         E+  VL+     L ++    I I GH D    R     N  L   RA + 
Sbjct: 96  FATEKFDLSEESKRVLRAQSAWLKNNPDVKIIIEGHCDE---RGTREYNLALGKKRADAV 152

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-----KIASDPMNSANRR-IDIL 337
            Q L+  GVS D+I   + +   +      K   +     NRR + I+
Sbjct: 153 KQFLVTLGVSRDKIE-TTSYGKDKPEVEVTKDNKEEAYRLNRRSVTII 199


>gi|171061026|ref|YP_001793375.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778471|gb|ACB36610.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 558

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   +     +    + +I  +L       E + + G +DA         N RLS  RA 
Sbjct: 435 FVAGAEGLDNKARRDMGRIVRLLERRLKQDERVMLLGFSDAL---GGDCANQRLSQQRAT 491

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           +    L   GV     + + GF       +++       NRR+++ +  +
Sbjct: 492 AVATELATYGVRP---AVVHGFGSAAPIASNETGAGRERNRRVEVWLTSK 538


>gi|86144308|ref|ZP_01062640.1| hypothetical protein MED222_07863 [Vibrio sp. MED222]
 gi|85837207|gb|EAQ55319.1| hypothetical protein MED222_07863 [Vibrio sp. MED222]
          Length = 182

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 16/132 (12%)

Query: 221 RTGILISIIDQRNTPMFDKSSSIP---LPETIVVLQK-----IGEVLAHSTEV--ISIRG 270
           R   +I I  Q +   +DK++       P  + +L +     +G+ L+   +   I I G
Sbjct: 55  RESEVIQIAAQDDVCFYDKATQSLVLNYPTNVYLLDENHKQVLGQYLSLVGDKSKIYIEG 114

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMN 328
           H D+         N  LS  RA      L K     +RI + + +       K+  +   
Sbjct: 115 HADSL---GSKSYNKALSSRRAGQVASYLKKDLHQGNRIVEYA-YGESAPICKVTDNKAT 170

Query: 329 SANRRIDILVED 340
             NRR+ I V+ 
Sbjct: 171 GCNRRVVITVKS 182


>gi|160882396|ref|ZP_02063399.1| hypothetical protein BACOVA_00345 [Bacteroides ovatus ATCC 8483]
 gi|156112209|gb|EDO13954.1| hypothetical protein BACOVA_00345 [Bacteroides ovatus ATCC 8483]
          Length = 395

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +  S     +I G+ D++        
Sbjct: 285 ITDTNIAPRTVFFKIGSDKLSPQEEMNLSYLASKIKESPNTTYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL+RA     +L+K  G+S DR+   +G  
Sbjct: 343 NQKLSLERAQVVKDLLVKKYGISADRLKVAAGGG 376


>gi|83944241|ref|ZP_00956696.1| OmpA domain protein [Sulfitobacter sp. EE-36]
 gi|83844785|gb|EAP82667.1| OmpA domain protein [Sulfitobacter sp. EE-36]
          Length = 317

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   ++         L  +  VL    +  I + GHTD+       ++N  LS  RA + 
Sbjct: 212 FGTGTAALGQGEFDALSNLAAVLKDQPDLRIVLVGHTDSV---GGLQNNIALSRSRAAAV 268

Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
            + L+ + G++ DRI    G  +     ++        NRR++ ++  
Sbjct: 269 RRRLITAHGIAGDRIEA-QGMGYLSPIASNQTKAGRDANRRVEAVLLP 315


>gi|5689652|emb|CAB51905.1| OmpA protein [Bordetella petrii]
          Length = 152

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +L ++ +          I  GHTD+       + N  LS  RA S
Sbjct: 76  FFDFDKSTLKPEGRQLLDQVAQQAQGIDLETIIAVGHTDSI---GTEKYNQGLSERRAAS 132

Query: 295 AYQVLMKSGVSE 306
               L+  GV  
Sbjct: 133 VKSYLVSKGVDP 144


>gi|90413203|ref|ZP_01221198.1| hypothetical protein P3TCK_16554 [Photobacterium profundum 3TCK]
 gi|90325755|gb|EAS42213.1| hypothetical protein P3TCK_16554 [Photobacterium profundum 3TCK]
          Length = 168

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   SI  PE I  L   I +V+      I I GHTD   ++     N +LS  R+   
Sbjct: 65  FDFDKSILKPEDIAELDDFIAKVIN-LKGHIVIAGHTD---YQGSDDYNEKLSFRRSTVI 120

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR-IDIL 337
            Q L      E+   +++ F  +   + +  +  N+ NRR I I 
Sbjct: 121 QQYLSARISVENYTFEVAYFGENNPIVKAHSLKANALNRRGIVIF 165


>gi|228469693|ref|ZP_04054661.1| immunogenic 75 kDa protein PG4 [Porphyromonas uenonis 60-3]
 gi|228308712|gb|EEK17438.1| immunogenic 75 kDa protein PG4 [Porphyromonas uenonis 60-3]
          Length = 559

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD++S     E    L  +  +L  +    + +  +TD    +   R N RLS  RA S 
Sbjct: 432 FDRASLRL--EGKKSLDYLVTLLEQNPDVRLELSSNTDR---KGSQRYNKRLSQRRAQSV 486

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
              L+  G++ DR+    G+   R  + +  M + 
Sbjct: 487 VNYLIAKGIAADRLEA-RGYGKERPYVVTKGMATR 520


>gi|296127832|ref|YP_003635084.1| hypothetical protein Bmur_2818 [Brachyspira murdochii DSM 12563]
 gi|296019648|gb|ADG72885.1| hypothetical protein Bmur_2818 [Brachyspira murdochii DSM 12563]
          Length = 197

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEVI- 266
           N+   +    T  G    ++D      +      P    +   V+ ++   ++++   I 
Sbjct: 45  NVNSNISLIKTERGY---LLDTDREIYYRLGEEKPYNIEDYSYVMNEVMTFMSNNRNSIL 101

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326
            + GH D +   N    N+RLS  RA     V++ SG S  R+ +I  ++    K  ++ 
Sbjct: 102 IVEGHADIT-GHNNGDINFRLSERRASVIRDVILSSGFSYKRV-QIFAYSDIIPKYITN- 158

Query: 327 MNSANRRIDIL 337
             S NRR+D +
Sbjct: 159 -ISQNRRVDFV 168


>gi|149189863|ref|ZP_01868143.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           shilonii AK1]
 gi|148836349|gb|EDL53306.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           shilonii AK1]
          Length = 334

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293
           FD    +   E    LQ +   +  +   IS   + GHTD       +  N ++S  RA 
Sbjct: 214 FDFGQRVVTSEQRQTLQSLASYIK-ADGHISKVLVDGHTDNV---GSSLSNLQVSRVRAD 269

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSAN 331
               VL + G    ++ ++          +++     + N
Sbjct: 270 DVASVLTELGTPA-KLIEVRAHGARYPVSSNETEFGQAKN 308


>gi|257093018|ref|YP_003166659.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045542|gb|ACV34730.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 566

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 17/115 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   S+         +         +       + G+TD++  R +   N RLS  RA +
Sbjct: 452 FPSGSAELSKRAEKTVDSEMVPFIENNGKAYFEVSGNTDSTGSREV---NQRLSAARARA 508

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS----------DPMNSANR--RIDIL 337
               L+K         KI G+   R               +   + NR  R+ + 
Sbjct: 509 VVDYLVKQWEFPRERFKIVGYGPDRPLCNEVNAAIEGLSLEDCRAINRTTRVAVF 563


>gi|90579158|ref|ZP_01234968.1| Putative sodium-type flagellar protein MotY [Vibrio angustum S14]
 gi|90439991|gb|EAS65172.1| Putative sodium-type flagellar protein MotY [Vibrio angustum S14]
          Length = 297

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I + + +S ++  + +    D+      ++    +S  RA    Q 
Sbjct: 194 SDTLNKISQQRLAQIADFVRYSDDIDLVLVAAFNDSIAGTTESQ---EMSERRAEKLRQY 250

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS-DPMNS-ANRRIDILV 338
               G+  +R+ ++  +   R    +  PM    NRR+ I +
Sbjct: 251 FQSLGLPAERV-QVEAYGKRRPIADNSTPMGRNLNRRVVISL 291


>gi|283833962|ref|ZP_06353703.1| peptidoglycan-associated lipoprotein [Citrobacter youngae ATCC
           29220]
 gi|291070093|gb|EFE08202.1| peptidoglycan-associated lipoprotein [Citrobacter youngae ATCC
           29220]
          Length = 172

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 72  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 128

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 129 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 167


>gi|85709639|ref|ZP_01040704.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
 gi|85688349|gb|EAQ28353.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
          Length = 370

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S+   +   +L   +       T  + + GHTD          N  L+  R  S
Sbjct: 263 FFDFDESVITADAATILDNAVTAYANCGTAAVMLAGHTDR---SGSVTYNMGLAERRNAS 319

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
               L   G+ + RIS    F   + ++ +        NRR+++
Sbjct: 320 VRAYLTGRGIPDGRISS-EAFGESQPRVPTADGVRELQNRRVEV 362


>gi|226944060|ref|YP_002799133.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
 gi|226718987|gb|ACO78158.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii
           DJ]
          Length = 215

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268
             VKG  FE  R G L+ +    ++       S+ L  T+  L ++ ++ A      + +
Sbjct: 60  EAVKGSQFEVERRGDLLVVTAPVDSSFNPDRPSMLLVATLGPLSRVAKLAAQDREVAVLL 119

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326
            GH D+S    +     RLS +RA S   +   SG+  DR+    G      +   A+  
Sbjct: 120 LGHGDSSGSAELTN---RLSQERAQSMAAIFRMSGLHHDRLM-YKGMGSDVPRSSNANKD 175

Query: 327 MNSANRRIDILVEDR 341
             S NRR+++ +  R
Sbjct: 176 GRSLNRRVEMYLTTR 190


>gi|331641242|ref|ZP_08342377.1| peptidoglycan-associated lipoprotein [Escherichia coli H736]
 gi|331651749|ref|ZP_08352768.1| peptidoglycan-associated lipoprotein [Escherichia coli M718]
 gi|331672263|ref|ZP_08373054.1| peptidoglycan-associated lipoprotein [Escherichia coli TA280]
 gi|331676423|ref|ZP_08377120.1| peptidoglycan-associated lipoprotein [Escherichia coli H591]
 gi|332282410|ref|ZP_08394823.1| peptidoglycan-associated outer membrane lipoprotein [Shigella sp.
           D9]
 gi|331038040|gb|EGI10260.1| peptidoglycan-associated lipoprotein [Escherichia coli H736]
 gi|331050027|gb|EGI22085.1| peptidoglycan-associated lipoprotein [Escherichia coli M718]
 gi|331070458|gb|EGI41822.1| peptidoglycan-associated lipoprotein [Escherichia coli TA280]
 gi|331075916|gb|EGI47213.1| peptidoglycan-associated lipoprotein [Escherichia coli H591]
 gi|332104762|gb|EGJ08108.1| peptidoglycan-associated outer membrane lipoprotein [Shigella sp.
           D9]
          Length = 181

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 81  FDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 137

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 138 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 176


>gi|165977295|ref|YP_001652888.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190151211|ref|YP_001969736.1| outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250896|ref|ZP_07337088.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252762|ref|ZP_07338923.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248928|ref|ZP_07530938.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253541|ref|ZP_07535410.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307257957|ref|ZP_07539710.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307264561|ref|ZP_07546144.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|165877396|gb|ABY70444.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189916342|gb|ACE62594.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648412|gb|EFL78607.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650246|gb|EFL80410.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854539|gb|EFM86732.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306858989|gb|EFM91033.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306863504|gb|EFM95434.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306870090|gb|EFN01851.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 364

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L  +   + ++      I + G+TD          N +LS  RA
Sbjct: 244 LFAFGKSNLKPAAATALDAMQTEINNAGLSNAAIQVNGYTDRI---GKEASNLKLSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
            +    ++  G     ++ + G+        +               + +RR+++ V+
Sbjct: 301 ETVANYIVSKGAPAANVTAV-GYGEANPVTGATCDKVKGRKALIACLAPDRRVEVQVQ 357


>gi|331006081|ref|ZP_08329417.1| OmpA/MotB domain containing protein [gamma proteobacterium
           IMCC1989]
 gi|330420118|gb|EGG94448.1| OmpA/MotB domain containing protein [gamma proteobacterium
           IMCC1989]
          Length = 262

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIA 281
           + ++        ++   +          L ++ + +     V  + I GHTD+   R   
Sbjct: 94  LPVNFSQIEKKSLYYNDAEELKSSARRYLNQVADYVKEDPAVKTVYIDGHTDSVGVRA-- 151

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
            DN   S +R       L++ GVS D I ++  G  +      +    + NRR+ +
Sbjct: 152 -DNLEKSKERTALVVDYLVEKGVSPDMIVARWHGERYQVATNQTAKGRATNRRVTL 206


>gi|262195035|ref|YP_003266244.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262078382|gb|ACY14351.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 195

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
               F   S+    +    L +    LA++ +V + + GH D    R     N  L   R
Sbjct: 65  ERVHFPLDSTDLPEDAREALAEAAPKLANNPDVHLYVDGHADQ---RGTEEYNVALGERR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
           A +    L + GVS D +  +S F   R      ++   + NRR+D  +  
Sbjct: 122 ARAVSDYLTRMGVSADNLHLVS-FGESRPVSEQGTNVAMAKNRRVDFRLMR 171


>gi|159184962|ref|NP_354858.2| OmpA family protein [Agrobacterium tumefaciens str. C58]
 gi|159140240|gb|AAK87643.2| OmpA family protein [Agrobacterium tumefaciens str. C58]
          Length = 746

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVIS---IRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + +  +          I GHTDA         N  LS +R
Sbjct: 632 FATGSADIPMAQARSLRKVADAINKALQKNPAETFLIEGHTDAV---GSDESNLVLSDER 688

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 689 AASVANVLTDVYGIPPENL-ATQGYGERYLKVQTLGPEQQNRRVTI 733


>gi|71909306|ref|YP_286893.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71848927|gb|AAZ48423.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 188

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           Q +  ++                  +    G+       + +  FD +S+    +    L
Sbjct: 45  QPVPPELQQETRTSPTTTGTADSAIKIDPVGLR-----TQRSVYFDLNSADIKADYDPAL 99

Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS- 310
           +     LA      + + G+ D    R  +  N RL L RA +    ++ +G +E +I+ 
Sbjct: 100 RAHARYLAEHPNARVRVEGNADE---RGSSEHNRRLGLKRAENVRSAMLSNGAAEKQIAI 156

Query: 311 KISGFAHHRLKIASDPMNSANRRIDIL 337
           K  G A  +L    +   S NRR D++
Sbjct: 157 KTLGEARPKLVGHDEASWSENRRADVI 183


>gi|167855462|ref|ZP_02478226.1| lipoprotein Plp4 [Haemophilus parasuis 29755]
 gi|167853391|gb|EDS24641.1| lipoprotein Plp4 [Haemophilus parasuis 29755]
          Length = 281

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD    I   +   V+  + E L  S  E + + G+ D          N  LS  R
Sbjct: 140 GDFLFDFDKDILTTKGREVVDNVAEQLKSSGAEKVKLVGYADRL---GSEEYNLDLSQRR 196

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336
           A      L++ G+    I  +  G A+       +   +       NRR++I
Sbjct: 197 ANMVKARLVEQGIKVP-IEAVGYGKANQVKACDGESGQALRDCLRPNRRVEI 247


>gi|148827586|ref|YP_001292339.1| hypothetical protein CGSHiGG_05065 [Haemophilus influenzae PittGG]
 gi|148718828|gb|ABQ99955.1| hypothetical protein CGSHiGG_05065 [Haemophilus influenzae PittGG]
          Length = 153

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI-SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +A  +++  +   ++N   G     T  G  +  +  + NT  F         E + +L 
Sbjct: 10  VAGSVAALAACSSSNNDAAGNGVAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILD 69

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
                L  +    + + G+TD    R     N  L   RA +    L   GV   ++  +
Sbjct: 70  AHAAYLNATPAAKVLVEGNTDE---RGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTV 126

Query: 313 SGFAHHRLKI--ASDPMNSANRR 333
           S +   +  +    +   S NRR
Sbjct: 127 S-YGEEKPAVLGHDEAAYSKNRR 148


>gi|221134181|ref|ZP_03560486.1| hypothetical protein GHTCC_04568 [Glaciecola sp. HTCC2999]
          Length = 303

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 13/173 (7%)

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISI 228
           E   LP L++  +         ++ A++    +  ++ +   I +    +      ++ +
Sbjct: 126 ETCQLPKLAQHNVEIEIDTTAQEESAQE--EVVETIIKEETVISEPARNQEDDFAQILLL 183

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287
           ++  N   F  +SS    + +  L +  +++ +       + G TD         +N  L
Sbjct: 184 LNADNQ--FATNSSEVNLKYVARLAQAVQIIQYYPQLQFHVVGSTDEL---GNTENNMAL 238

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
              RA    + L   G+S DRI  +            D  +    NRR++I +
Sbjct: 239 GQARADGVARYLEAFGISMDRI-SVMTNGEANPLFPGDAPHIRLTNRRVNITL 290


>gi|84502861|ref|ZP_01000974.1| OmpA family protein [Oceanicola batsensis HTCC2597]
 gi|84388844|gb|EAQ01714.1| OmpA family protein [Oceanicola batsensis HTCC2597]
          Length = 191

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F        P     L +  +  + +     I GHTD+   R     N RLS +RA + 
Sbjct: 93  FFATDKYYISPANRQRLAEFFK--SSTATAFIIAGHTDS---RASDEYNMRLSYNRANAV 147

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            +V   +G    RI+ + G+        ++     + NRR++I+
Sbjct: 148 ARVAAATG---ARIADVRGYGERMPAATNNTRAGMAKNRRVEII 188


>gi|209883450|ref|YP_002287307.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
 gi|209871646|gb|ACI91442.1| OmpA/MotB [Oligotropha carboxidovorans OM5]
          Length = 323

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    LQ I + +  + +        I GHTDA        DN  LS  R
Sbjct: 205 FETGSWDIPPDQAAKLQVIADGMNRAIQRNPQTVFLIEGHTDAV---GSDVDNLSLSDRR 261

Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325
           A SA ++L  + GV  + ++   G+    LK+A+D
Sbjct: 262 AESAAELLTQQFGVPPENLTS-QGYGEQYLKVATD 295


>gi|153874379|ref|ZP_02002623.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152069157|gb|EDN67377.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 275

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 28/263 (10%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P +    KID       T++         +      ++ +               +    
Sbjct: 26  PPKKPAPKIDSQKPPSQTQSPT-----YQDSPVYQDKMVDTTTLDERVLAQTKPTDDEPY 80

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
            S   K L    +     N  E       S       +  K    L +          A+
Sbjct: 81  ASLDTKTLLAKAETLYGNNAYEEALPFFKSAATREDGQLAKTYAGLYQTQMKLKHQSDAE 140

Query: 210 NIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSI------PLPETIVVLQKIGEVLA 260
                +        + IS+ +        +F+  S+          E    L++I +   
Sbjct: 141 QAFAQL--------LAISLKESNQLNFRFLFEVGSTEFVNDQALRTEYSFWLREIAKYFQ 192

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           +      I GH   +  RN A+   +LSL RA +  Q+++    S    SK+ G  +   
Sbjct: 193 NRKSCFQIVGHRGKNEKRNDAQ---KLSLLRAKAVQQIMITHSPSITFQSKVLGKGNSEN 249

Query: 321 KI---ASDPMNSANRRIDILVED 340
                ++D M++ +RR++I+V D
Sbjct: 250 LSGIGSNDVMDTLDRRVEIVVVD 272


>gi|241667092|ref|YP_002985176.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862549|gb|ACS60214.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 652

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                I + GHTD    R     N +LS  RA +    L  +G+         G      
Sbjct: 572 QKPGRIILIGHTDR---RGGDDYNQKLSERRAQAVADFLKSNGLDAT--IDAEGRGASEP 626

Query: 321 KIAS-------DPMNSANRRID 335
              +       D +++ NRR++
Sbjct: 627 VDVTATANLTEDDVDALNRRVE 648


>gi|167644831|ref|YP_001682494.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167347261|gb|ABZ69996.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 409

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F     +  PE   V+ +  +     +   I + GHTD        + N +LS  RA + 
Sbjct: 307 FPFDQYVLTPEAQAVVSQAADYAKGGNATKIVVVGHTDT---SGSPKYNAKLSERRAKAV 363

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
              L+ +GV+      +         +A+        NRR  I +
Sbjct: 364 ADGLVGAGVAAT-TLAVDWKGESEPAVATGDGVKEPLNRRSTISI 407


>gi|301164479|emb|CBW24037.1| putative membrane protein [Bacteroides fragilis 638R]
          Length = 445

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            +++   ++ L         + +       I   ++     F + S+          L +
Sbjct: 303 KERMKREIASLNMQLQQAHTVVKEKTGSDPILGFNELPPVYFKRGSAYLNVALYKNELCR 362

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I + L    E  + + GH D         D N ++SL RA +    L K G+   RI  +
Sbjct: 363 IVQTLKKYPELKVILSGHAD----HTGNPDINQKISLQRAEALAAYLEKKGIDGKRI-AV 417

Query: 313 SGFAHHRLKIASDPMNSANRR--IDI 336
            G     L    +  +   RR  ++I
Sbjct: 418 KGECIDMLTSDPNNYSVLARRVIVEI 443


>gi|253566150|ref|ZP_04843604.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766901|ref|ZP_06094730.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|251945254|gb|EES85692.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253278|gb|EEZ24754.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 435

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            +++   ++ L         + +       I   ++     F + S+          L +
Sbjct: 293 KERMKREIASLNMQLQQAHTVVKEKTGSDPILGFNELPPVYFKRGSAYLNVALYKNELCR 352

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I + L    E  + + GH D         D N ++SL RA +    L K G+   RI  +
Sbjct: 353 IVQTLKKYPELKVILSGHAD----HTGNPDINQKISLQRAEALAAYLEKKGIDGKRI-AV 407

Query: 313 SGFAHHRLKIASDPMNSANRR--IDI 336
            G     L    +  +   RR  ++I
Sbjct: 408 KGECIDMLTSDPNNYSVLARRVIVEI 433


>gi|50235073|gb|AAT70739.1| OmpA [Riemerella anatipestifer]
          Length = 387

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  +V+ + +     + GHTD    +  A  N +LS +RA S
Sbjct: 258 FFNFNKASIRCESNTKLDQAAQVIQSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314

Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334
               L   GV+  ++ SK  G A       AS+     +R++
Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356


>gi|60683014|ref|YP_213158.1| hypothetical protein BF3556 [Bacteroides fragilis NCTC 9343]
 gi|60494448|emb|CAH09244.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
          Length = 445

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            +++   ++ L         + +       I   ++     F + S+          L +
Sbjct: 303 KERMKREIASLNMQLQQAHTVVKEKTGSDPILGFNELPPVYFKRGSAYLNVALYKNELCR 362

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I + L    E  + + GH D         D N ++SL RA +    L K G+   RI  +
Sbjct: 363 IVQTLKKYPELKVILSGHAD----HTGNPDINQKISLQRAEALAAYLEKKGIDGKRI-AV 417

Query: 313 SGFAHHRLKIASDPMNSANRR--IDI 336
            G     L    +  +   RR  ++I
Sbjct: 418 KGECIDMLTSDPNNYSVLARRVIVEI 443


>gi|53715052|ref|YP_101044.1| putative outer membrane protein [Bacteroides fragilis YCH46]
 gi|52217917|dbj|BAD50510.1| putative outer membrane protein [Bacteroides fragilis YCH46]
          Length = 442

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254
            +++   ++ L         + +       I   ++     F + S+          L +
Sbjct: 300 KERMKREIASLNMQLQQAHTVVKEKTGSDPILGFNELPPVYFKRGSAYLNVALYKNELCR 359

Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           I + L    E  + + GH D         D N ++SL RA +    L K G+   RI  +
Sbjct: 360 IVQTLKKYPELKVILSGHAD----HTGNPDINQKISLQRAEALAAYLEKKGIDGKRI-AV 414

Query: 313 SGFAHHRLKIASDPMNSANRR--IDI 336
            G     L    +  +   RR  ++I
Sbjct: 415 KGECIDMLTSDPNNYSVLARRVIVEI 440


>gi|323493924|ref|ZP_08099041.1| Outer membrane protein [Vibrio brasiliensis LMG 20546]
 gi|323311865|gb|EGA65012.1| Outer membrane protein [Vibrio brasiliensis LMG 20546]
          Length = 188

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              P    VL++   ++ ++   I I GH D+         N  LS  RA    + L   
Sbjct: 94  KLSPNHKQVLEQYLGLVNNTA-KIYIEGHADSL---GSEGYNKALSARRANQVAKYLKSD 149

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
               +RI +   +            ++   NRR+ I V+ 
Sbjct: 150 LKQGNRIVE-HAYGESSPICNLTQNSATGCNRRVVITVKS 188


>gi|188577427|ref|YP_001914356.1| outer membrane protein P6 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521879|gb|ACD59824.1| outer membrane protein P6 [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       PE   ++    + L       I+++G+ D    R     N  L   R  + 
Sbjct: 45  FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 101

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337
              L  +G S  +++ +S +   R     +++   S NRR++I+
Sbjct: 102 SSSLQAAGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 144


>gi|256828401|ref|YP_003157129.1| peptidoglycan-associated lipoprotein [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577577|gb|ACU88713.1| peptidoglycan-associated lipoprotein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 179

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   S+    E+  VL    E+L  +    + I GH D    R     N  L   R
Sbjct: 72  DKIYFAFDSNELTQESRQVLTDKAELLKANPALSLLIEGHCDE---RGTNEYNLALGERR 128

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
           A +AY+ L+  G+   ++ +I  +      +     ++   NRR
Sbjct: 129 ARAAYEFLVLLGIDSSKL-QIISYGEEYPAVQGSNEDAWGKNRR 171


>gi|37676263|ref|NP_936659.1| outer membrane protein [Vibrio vulnificus YJ016]
 gi|37200804|dbj|BAC96629.1| outer membrane protein [Vibrio vulnificus YJ016]
          Length = 198

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
               IS+ GH D++        N +LS  RA +  + L K     +RI +   F      
Sbjct: 123 PNRKISVEGHADST---GSDTYNKQLSARRANTVARFLKKDLGLGNRIVE-KAFGETTPI 178

Query: 322 --IASDPMNSANRRIDILVE 339
                +  N  NRR+ + +E
Sbjct: 179 CAAEENQQNGCNRRVVLTLE 198


>gi|49258621|pdb|1R1M|A Chain A, Structure Of The Ompa-Like Domain Of Rmpm From Neisseria
           Meningitidis
          Length = 164

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+ +  + + + GHTD   F    + N  LS  RAY 
Sbjct: 18  LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTD---FMGSDKYNQALSERRAYV 74

Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319
               L+ +GV   RIS + G    +
Sbjct: 75  VANNLVSNGVPVSRISAV-GLGESQ 98


>gi|257465020|ref|ZP_05629391.1| outer membrane protein precursor PalA [Actinobacillus minor 202]
 gi|257450680|gb|EEV24723.1| outer membrane protein precursor PalA [Actinobacillus minor 202]
          Length = 160

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F   S     E   +L    ++L  +   +++ GH D    R     N  
Sbjct: 53  DLQTRYNTVYFAFDSYAVEGEYRQLLDAHAQLLNATKANVTVAGHADE---RGTPEYNIA 109

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L + G     +S +S +   +  +   ++   + NRR
Sbjct: 110 LGQRRANAVQNYLAQQG--ATNVSTVS-YGEEKPAVLGHTEADYAKNRR 155


>gi|119947169|ref|YP_944849.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37]
 gi|119865773|gb|ABM05250.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37]
          Length = 295

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S   I I GH+D       +  N RLS  RA    Q L+ + V+ D + +I G      
Sbjct: 209 QSVVKILIDGHSDKY---GNSSQNLRLSKFRADEIAQTLINNSVNMD-LIEIRGHGGRYP 264

Query: 321 KIASD--PMNSANRRIDI 336
             ++D       NRR+ I
Sbjct: 265 IASNDSAEGREKNRRVSI 282


>gi|165975761|ref|YP_001651354.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149578|ref|YP_001968103.1| outer membrane protein precursor PalA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249536|ref|ZP_07335743.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252546|ref|ZP_07338709.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245117|ref|ZP_07527210.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247296|ref|ZP_07529344.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251837|ref|ZP_07533738.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254073|ref|ZP_07535920.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256332|ref|ZP_07538115.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258528|ref|ZP_07540265.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260771|ref|ZP_07542458.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262897|ref|ZP_07544521.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|322514835|ref|ZP_08067854.1| peptidoglycan-associated lipoprotein [Actinobacillus ureae ATCC
           25976]
 gi|1405436|emb|CAA61413.1| PALA outer membrane protein precursor [Actinobacillus
           pleuropneumoniae]
 gi|165875862|gb|ABY68910.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914709|gb|ACE60961.1| outer membrane protein precursor PalA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648514|gb|EFL78707.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651610|gb|EFL81759.1| peptidoglycan-associated outer membrane lipoprotein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854006|gb|EFM86218.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856140|gb|EFM88295.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860529|gb|EFM92541.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862998|gb|EFM94945.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865158|gb|EFM97058.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867432|gb|EFM99283.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869497|gb|EFN01287.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871802|gb|EFN03522.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|322119217|gb|EFX91358.1| peptidoglycan-associated lipoprotein [Actinobacillus ureae ATCC
           25976]
          Length = 152

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F   S     E   +L      L  +   +++ GH D    R     N  
Sbjct: 45  DLQTRYNTVYFGFDSYAVEGEYQQLLDAHAAYLTSANGKVTVAGHADE---RGTPEYNIA 101

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   G   +++S +S +   +  +   ++   + NRR
Sbjct: 102 LGQRRADAVKNYLATKG--ANQVSTVS-YGEEKPAVLGHTEADYAKNRR 147


>gi|32033646|ref|ZP_00133957.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207788|ref|YP_001053013.1| outer membrane protein precursor PalA [Actinobacillus
           pleuropneumoniae L20]
 gi|307249520|ref|ZP_07531507.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|126096580|gb|ABN73408.1| outer membrane protein precursor PalA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306858375|gb|EFM90444.1| Outer membrane protein PalA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 156

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F   S     E   +L      L  +   +++ GH D    R     N  
Sbjct: 49  DLQTRYNTVYFGFDSYAVEGEYQQLLDAHAAYLTSANGKVTVAGHADE---RGTPEYNIA 105

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   G   +++S +S +   +  +   ++   + NRR
Sbjct: 106 LGQRRADAVKNYLATKG--ANQVSTVS-YGEEKPAVLGHTEADYAKNRR 151


>gi|226330927|ref|ZP_03806445.1| hypothetical protein PROPEN_04850 [Proteus penneri ATCC 35198]
 gi|225201722|gb|EEG84076.1| hypothetical protein PROPEN_04850 [Proteus penneri ATCC 35198]
          Length = 175

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
           Q+N   F         +   +L      L  +    I++ GH D    R     N  L  
Sbjct: 69  QQNIVYFGFDKYDISSDYANLLDAHAAFLRANPSVRITVEGHADE---RGTPEYNIALGE 125

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            RA +    L   GVS +++S +S G     +    +   + NRR
Sbjct: 126 RRANAVKMYLQGKGVSAEQLSIVSYGKEKPAVLGHDEAAYAKNRR 170


>gi|217978517|ref|YP_002362664.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
 gi|217503893|gb|ACK51302.1| OmpA/MotB domain protein [Methylocella silvestris BL2]
          Length = 325

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 24/126 (19%)

Query: 225 LISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
            +  +  R  PM   F+  S+    E      ++   +     +++ + GHTD    R  
Sbjct: 205 RVRGVVPRAVPMPITFEYRSASLTDEGRQAADELARAIREQQPQIVRLVGHTD---LRGG 261

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMN-------S 329
              N +LS+ RA +    L ++ +       ++    G         SD          +
Sbjct: 262 PEYNMKLSVARAEAVAAYLKENNI------AVTVEPEGVGAAEPLQLSDASGLTQDDVYA 315

Query: 330 ANRRID 335
            NRR++
Sbjct: 316 LNRRVE 321


>gi|85058865|ref|YP_454567.1| peptidoglycan-associated outer membrane lipoprotein [Sodalis
           glossinidius str. 'morsitans']
 gi|84779385|dbj|BAE74162.1| peptidoglycan-associated lipoprotein [Sodalis glossinidius str.
           'morsitans']
          Length = 170

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 219 TTRTGILISIIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275
           ++     + + + +  N   FD      L E   +L      L  +    +++ GH D  
Sbjct: 50  SSDEQARLQMQELQRNNIVYFDLDKYDILSEFAQMLDAHANFLRSNPSYKVTVEGHADE- 108

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
             R     N  L   RA +    L   GV  D+I+ +S G     +    +   + NRR
Sbjct: 109 --RGTPEYNIALGERRANAVKMYLQGKGVYADQIAIVSYGKEKPAVLGHDESAYAKNRR 165


>gi|305665203|ref|YP_003861490.1| OmpA family protein [Maribacter sp. HTCC2170]
 gi|88709956|gb|EAR02188.1| OmpA family protein [Maribacter sp. HTCC2170]
          Length = 640

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD+  S    +    L K+ + +       ++I  HT++   +   R N +LS  R+ + 
Sbjct: 529 FDRGKSNITLKIKTELDKVVDAVQRFPQLKLTIESHTNS---KGSKRSNQQLSQRRSEAI 585

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323
              L  +G+S   I  + G+   +L   
Sbjct: 586 KTYLTTNGLSSANIKAV-GYGEEKLVNN 612


>gi|116329778|ref|YP_799497.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332660|ref|YP_802377.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122671|gb|ABJ80564.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127527|gb|ABJ77619.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 363

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+K+S     E    L ++   +   S+  + I GHT           N R+SL RA + 
Sbjct: 261 FEKNSIQIRKEAKPGLNRLSRWMKEDSSIRVKIFGHTS---LEGTEAANQRVSLLRAETV 317

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDILVED 340
              L  +G+S+DR   I   A   +   + +     NRR+++ + +
Sbjct: 318 RDYLAGNGISKDRFEVIPKGASVPIGDNSKEEGKEMNRRVELRIRN 363


>gi|67459626|ref|YP_247250.1| peptidoglycan-associated lipoprotein precursor [Rickettsia felis
           URRWXCal2]
 gi|67005159|gb|AAY62085.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia felis
           URRWXCal2]
          Length = 156

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+       ++ GH D    R     N  L   RA +A
Sbjct: 54  FAFDSSALSPKAKEELERQACWLSKHPEVKATVEGHCDE---RGTREYNLGLGERRAAAA 110

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   G+   R++ IS +   R  +  +     + NRR
Sbjct: 111 KKFLAHKGIDHSRLNTIS-YGKDRPAMMGNTEEAFAYNRR 149


>gi|187927781|ref|YP_001898268.1| peptidoglycan-associated lipoprotein [Ralstonia pickettii 12J]
 gi|187724671|gb|ACD25836.1| peptidoglycan-associated lipoprotein [Ralstonia pickettii 12J]
          Length = 173

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +L +    L +H+   + I+G+TD    R  +  N  L   RA + 
Sbjct: 73  FDFDSYSVKSEYQGLLGQHSRYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV + ++  +S G    +     +   + NRR DI+
Sbjct: 130 RRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIV 172


>gi|254381948|ref|ZP_04997311.1| secreted protein [Streptomyces sp. Mg1]
 gi|194340856|gb|EDX21822.1| secreted protein [Streptomyces sp. Mg1]
          Length = 262

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + + G TD             LS  RA +    L K+  +   I  + G++       +
Sbjct: 184 RVRVFGFTDDQ---GSYEHGKELSKKRADAVQVELAKTVTNPSVIFDVRGYSEDYPIADN 240

Query: 325 --DPMNSANRRIDI 336
             +     NRR++I
Sbjct: 241 GTEEGRKKNRRVEI 254


>gi|186477205|ref|YP_001858675.1| peptidoglycan-associated lipoprotein [Burkholderia phymatum STM815]
 gi|184193664|gb|ACC71629.1| peptidoglycan-associated lipoprotein [Burkholderia phymatum STM815]
          Length = 169

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDDYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV +  +  +S G    +     +   + NRR D++
Sbjct: 124 RRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQNRRADLV 166


>gi|284005612|ref|YP_003391432.1| hypothetical protein Slin_6677 [Spirosoma linguale DSM 74]
 gi|283820796|gb|ADB42633.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
          Length = 222

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 36/178 (20%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           +++D+  KI + L    +  +      E     + I   D     +FD    +P  + + 
Sbjct: 40  QVEDVKAKIYTDLKAEFSQ-VATQWNLEINND-LSIRFKDADG--LFDGGKGVPTGKFVN 95

Query: 251 VLQKIGE----VLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           +L +       +++    V     + + GHT +  ++        LS  RA +    L+K
Sbjct: 96  ILNQFIPKYLAIISKPEYVKSIEEVRVEGHTASGDYQQTI----ELSQQRANNVLYYLVK 151

Query: 302 S------GVSEDR----ISKISGFAHHRLKIAS--------DPMNSANRRIDI-LVED 340
                       R    I   SG+   R   A            +  +RR++  +V +
Sbjct: 152 HPSFFRLNQESQRHLQYILTTSGYGWSRALDADGKYSKITRKQYDVQSRRVEFRIVTN 209


>gi|197119876|ref|YP_002140303.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
 gi|197089236|gb|ACH40507.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem]
          Length = 199

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 7/179 (3%)

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +K + K E       S      ++ +++ +  A      ++                  
Sbjct: 23  AKKDVVKTEEPISAAQSAPAPAPVQTQQQARPEAPAAQQPITETTPSREQPVAQETPKDA 82

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           G    +  +     F+  SS    E    L K  E L+      + I G+ D    R   
Sbjct: 83  GKAQEVQAELQKVYFNFDSSDLSEEARASLSKNAEYLSRQAGTKVRIEGNCDE---RGSD 139

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
             N  L   RA SA   L+  G++ DR+S IS +   +       +   + NRR + ++
Sbjct: 140 DYNMALGERRAKSAKDYLVNLGIASDRLSTIS-YGEEKPADPGHDEAAWAKNRRDEFVI 197


>gi|118474845|ref|YP_891435.1| flagellar motor protein MotB [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414071|gb|ABK82491.1| flagellar motor protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 238

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 229 IDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNW 285
           ID      FD  S+    P+ I  ++ I  ++    E +S+   G+ D     N    ++
Sbjct: 114 IDLPAGIKFDPMSAEIYNPDMINFVKIISMIINKVPESVSVEIRGYADDY---NEYAKDY 170

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           +L+ DRAY+   +L+ +G+   R+ + + F        SD
Sbjct: 171 KLAADRAYNVLTMLIGNGIDPKRL-RFTSFGDSVQIKNSD 209



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 64/209 (30%), Gaps = 6/209 (2%)

Query: 20  KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79
           K            W + YADF+++L+A F+ ++ I+A +    +A+          +   
Sbjct: 3   KKKKQQECPAGEKWAVPYADFLSLLLALFIALYAISAVNTAKVEAL----KTEIIKIFDF 58

Query: 80  SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
                 +Q+     S+ + D         +S  +K  + N++  Y+   +          
Sbjct: 59  PDSKGVKQSSKNAKSEKQFDGPGIAMQNSDSTSVKQNTNNER--YRVALDQAENQVAIDL 116

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
               K           D+     +   I  +    +    +          +   LA   
Sbjct: 117 PAGIKFDPMSAEIYNPDMINFVKIISMIINKVPESVSVEIRGYADDYNEYAKDYKLAADR 176

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISI 228
           +  +  ++  N +       T  G  + I
Sbjct: 177 AYNVLTMLIGNGIDPKRLRFTSFGDSVQI 205


>gi|332707017|ref|ZP_08427077.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L]
 gi|332354282|gb|EGJ33762.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L]
          Length = 802

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 6/231 (2%)

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
             ++   + +K      K   Q     +             N    +  +  +L  + +L
Sbjct: 564 PEVSDYGLTVKANRQRLKLAGQLPNQALRSNVEQIAKAAAPNLALDNQIEVIELPYTDEL 623

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
            ++  +     L  +    I+A   + R+      + +     +          ++    
Sbjct: 624 TQAQVQRVRNTLNQMDGVVIVASYTEGRVTVKGAILYAKDFPKIIQAFESIPGVKSVENN 683

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
           + +  +D  +   FD  S+   PE I   ++ I E +    +  + I G+ D    R   
Sbjct: 684 LQLHGLDVTSRIYFDLGSAQLKPEDIGTKIRSIKEFMERYPQKHLRIIGYADP---RGQL 740

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            +N  L+  RA     VL++ G+   R+ ++ G       + +      NR
Sbjct: 741 TENQGLAQQRAQMVKDVLVQQGIDPKRL-QVRGVGKRPPDVDASQPLWLNR 790


>gi|320539138|ref|ZP_08038809.1| peptidoglycan-associated outer membrane lipoprotein [Serratia
           symbiotica str. Tucson]
 gi|320030776|gb|EFW12784.1| peptidoglycan-associated outer membrane lipoprotein [Serratia
           symbiotica str. Tucson]
          Length = 169

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHS 262
           +G   +N    +  E     + +  + + NT  F         +   +L      L  ++
Sbjct: 37  AGTGIENGSSNLSSEEQAR-LQMQELQKENTVYFGLDKYDVSADFAQILDAHATFLRNNA 95

Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
           +  +++ GH D    R     N  L   RA S    L   GV  D+IS +S        +
Sbjct: 96  SYKVTVEGHADE---RGTPEYNIALGERRANSVKMYLQGKGVLADQISIVSYGKEKPAVL 152

Query: 323 ASDPMN-SANRR 333
             D    + NRR
Sbjct: 153 GHDAAAYAKNRR 164


>gi|94264973|ref|ZP_01288744.1| OmpA/MotB [delta proteobacterium MLMS-1]
 gi|93454576|gb|EAT04854.1| OmpA/MotB [delta proteobacterium MLMS-1]
          Length = 192

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +L + T  + + G+TD    R     N  L   RA SA + LM  G++  R+  +S    
Sbjct: 112 MLDNRTVRVRVEGNTDE---RGTREYNMALGERRAMSAKKYLMDMGIASGRLETVSYGEE 168

Query: 318 HRLKIASDPMN-SANRRIDILVED 340
             +    D  + S NRR+D ++  
Sbjct: 169 RPIAFGQDEESWSLNRRVDFVILR 192


>gi|257092025|ref|YP_003165666.1| membrane-bound proton-translocating pyrophosphatase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044549|gb|ACV33737.1| V-type H(+)-translocating pyrophosphatase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 806

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+    +    L+ I      +    ++I G  D          N  ++ +RA + 
Sbjct: 711 FATGSAELPADATKTLEVIVVHAKANPGAKLAISGFHDP---SGSQAVNEEVAKNRAKAV 767

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILVE 339
              L   G++E+RI         + ++ +   DP  +  RR+++ V+
Sbjct: 768 RDSLKNVGIAEERIEL------RKPEVTTGGGDPAEA--RRVEVSVQ 806


>gi|119775139|ref|YP_927879.1| OmpA family protein [Shewanella amazonensis SB2B]
 gi|119767639|gb|ABM00210.1| conserved hypothetical OmpA family protein [Shewanella amazonensis
           SB2B]
          Length = 240

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 17/189 (8%)

Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210
           +  G  + KS   E+ IN  +       ++ + LA K       LA   + T + L    
Sbjct: 53  AFAGGIIGKSVGDEEEINDHKQALATQDAEIERLAQKS-ANYDALASDYAITRAQLNTLQ 111

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
             +         G+ +          F   SS   P     LQ +  V+    + VI ++
Sbjct: 112 TAREAKLTELTLGLNVQ---------FKTGSSDIEPHFQNQLQAVARVMEAQPDLVIDLK 162

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           G  D    R  +  N  LS  R  +    L+ +GV+ DR+ +   F       A     S
Sbjct: 163 GFADR---RGDSDYNQALSEQRLANVKAYLVSAGVASDRL-QGKAFGATAPLSADAGFES 218

Query: 330 A--NRRIDI 336
              +RR+ +
Sbjct: 219 DFFDRRVTL 227


>gi|332663336|ref|YP_004446124.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332332150|gb|AEE49251.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 665

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
            + +F   S          L      +A    + I I G+ D     +    N  LS  R
Sbjct: 563 KSFLFKFDSDEMEFNEQDKLDAFVATIAGKDIQRIEIDGYADD--IGDNGY-NLELSEKR 619

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           A      L+  G    RI  + G+      I  + +   NR++++ +
Sbjct: 620 AKKIALYLVDKGYPVTRI-ALKGYGE----ITDESLKKLNRKVELKI 661


>gi|254439271|ref|ZP_05052765.1| hypothetical protein OA307_4141 [Octadecabacter antarcticus 307]
 gi|198254717|gb|EDY79031.1| hypothetical protein OA307_4141 [Octadecabacter antarcticus 307]
          Length = 514

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+    ++   + ++ + +         + + G +D    R +A  N  LS  RA 
Sbjct: 404 FEPGSTRLDGQSRSNVMQLAQAIRDGRFGGRELMLVGFSDG---RGLALANRDLSSARAE 460

Query: 294 SAYQVLMK--SGVSEDRIS-KISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +    L +   G   + +    + F         D       NRR+++ V D
Sbjct: 461 AVRLDLTRALGGTFPENVEIDTAAFGEALPMACDDTIWGQQTNRRVELWVRD 512


>gi|152978717|ref|YP_001344346.1| OmpA domain-containing protein [Actinobacillus succinogenes 130Z]
 gi|150840440|gb|ABR74411.1| OmpA domain protein transmembrane region-containing protein
           [Actinobacillus succinogenes 130Z]
          Length = 356

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S   PE    L  I   +A  +   +++ G+ D          N +LS  RA + 
Sbjct: 239 FGFNKSTLKPEAASTLDGIYSEIAQVSSPAVAVNGYADRI---GKDAANLKLSQRRAETV 295

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE-DRQG 343
              L+  GV  + I+  +G+        +  D +            +RR+++ V+ ++Q 
Sbjct: 296 ANYLVSKGVDSNAITA-TGYGSANPVTGNTCDAVKGRKALIACLAPDRRVEVQVQGNKQA 354


>gi|330447006|ref|ZP_08310656.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491197|dbj|GAA05153.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 263

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + +  LP+    L    E++       + + G+TD+       + N+ L L RA + 
Sbjct: 139 FALNKTELLPQYKESLIYASEIIKRQEHWHLQLIGYTDSQ---GSTQSNYHLGLARANTV 195

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
            + L++ GV+ ++IS +S      +   +     +NR+++
Sbjct: 196 KEFLVEKGVNTNQISVVSVGESQAIGDYTLTKQLSNRKVE 235


>gi|163854145|ref|YP_001642188.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163665750|gb|ABY33117.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1]
          Length = 717

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  +      EV  I G+TDA        DN  LS  R
Sbjct: 596 FDTGSFTVTPDQAKRLSTIAEAINRTIKDNPQEVFLIEGYTDAV---GSDIDNLSLSDRR 652

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           A S   VL ++           G+    LK+ +   N  NRR+
Sbjct: 653 AQSVASVLTQNFQVPPENLTTQGYGEQYLKVNTQEANRENRRV 695


>gi|300775077|ref|ZP_07084940.1| outer membrane protein A [Chryseobacterium gleum ATCC 35910]
 gi|300506892|gb|EFK38027.1| outer membrane protein A [Chryseobacterium gleum ATCC 35910]
          Length = 503

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD + +   PE+   L    E++        + G TD    +     N +LS +RA S  
Sbjct: 361 FDFNKATIKPESKGALDTAAEIIKKDGGRFLLVGETDK---KGSDAYNLKLSKERAASVV 417

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDI 336
             L   GV  + + K  G      K+   ASD    ++R++ +
Sbjct: 418 AALDARGVDTN-VLKSIGIGEQNAKVAESASDAERQSDRKVTV 459


>gi|218259848|ref|ZP_03475401.1| hypothetical protein PRABACTJOHN_01060 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224884|gb|EEC97534.1| hypothetical protein PRABACTJOHN_01060 [Parabacteroides johnsonii
           DSM 18315]
          Length = 403

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 225 LISIIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI 280
           ++   D     N  +F  + +   P   V +  I + L  +    + + G+TD       
Sbjct: 288 VVEFEDNPLINNVVLFKINQTKVDPYQGVNIYNIAQYLKDNPQFKVRVIGYTDRK--TGT 345

Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
           ++ N +LS +RA +  ++L+    +S DRI K+               N A
Sbjct: 346 SQINEKLSAERAQNVARILISDYNISRDRI-KVEWVGDKEPPFDKPEWNRA 395


>gi|218128457|ref|ZP_03457261.1| hypothetical protein BACEGG_00025 [Bacteroides eggerthii DSM 20697]
 gi|217989348|gb|EEC55661.1| hypothetical protein BACEGG_00025 [Bacteroides eggerthii DSM 20697]
          Length = 410

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
           T  F+  S+   P  ++ +  + + +        ++ G+ D++        N  LSL RA
Sbjct: 309 TVFFNIGSAEVSPREVMNISYLAKQMQEFPNATYTVNGYADSA--TGTPEFNKELSLKRA 366

Query: 293 YSAYQVLMKS-GVSEDRI 309
            +   VL+K  G+S DR+
Sbjct: 367 QAVVDVLVKDYGISADRL 384


>gi|152993346|ref|YP_001359067.1| peptidoglycan-associated lipoprotein [Sulfurovum sp. NBC37-1]
 gi|151425207|dbj|BAF72710.1| peptidoglycan-associated lipoprotein [Sulfurovum sp. NBC37-1]
          Length = 172

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           A ++  I + G+ D          N+ L L RA +    L   GV   R+  +S +    
Sbjct: 94  AQTSGKIKVEGNCDEF---GTDEYNYALGLKRAKAVKDALRAEGVDTARMVMVS-YGESN 149

Query: 320 LK--IASDPMNSANRRIDI 336
                 +D   + NRR+D+
Sbjct: 150 PVCSSPTDSCYARNRRVDL 168


>gi|325293279|ref|YP_004279143.1| outer membrane protein, OmpA family protein [Agrobacterium sp.
           H13-3]
 gi|325061132|gb|ADY64823.1| putative outer membrane protein, OmpA family protein [Agrobacterium
           sp. H13-3]
          Length = 771

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVIS---IRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ + +  +          I GHTDA         N  LS +R
Sbjct: 657 FATGSADIPMAQARSLRKVADAINKALAKNPAETFLIEGHTDAV---GSDESNLVLSDER 713

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL    G+  + +    G+    LK+ +      NRR+ I
Sbjct: 714 AASVANVLTDVYGIPPENL-ATQGYGERYLKVQTLGPEQQNRRVTI 758


>gi|90409039|ref|ZP_01217166.1| sodium-type flagellar protein MotY [Psychromonas sp. CNPT3]
 gi|90309846|gb|EAS38004.1| sodium-type flagellar protein MotY [Psychromonas sp. CNPT3]
          Length = 232

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           + K+       +   L+ IG+ + +     VI + G++DA         N  LS  RA +
Sbjct: 126 YAKNGVQLDTFSKKRLKMIGDYIQYDENISVILLSGYSDAY---GTESHNMALSTKRAEA 182

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
               L + G+  D+I +++ F        +  +     NRR+ I +E  +
Sbjct: 183 IKSYLKEIGMQSDKI-QVASFGEKHHVADNSNILGRIQNRRVVISIEREE 231


>gi|329113829|ref|ZP_08242600.1| Outer membrane lipoprotein Omp16 [Acetobacter pomorum DM001]
 gi|326696839|gb|EGE48509.1| Outer membrane lipoprotein Omp16 [Acetobacter pomorum DM001]
          Length = 160

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D + S    +    LQK  + LA      + + G+ D    R     N  L   R
Sbjct: 55  DRVFYDLNKSGLRDDAKDTLQKQADWLAKYPQVNVEVAGNCDD---RGTEEYNIALGQRR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  GV+  RIS IS        +  D    + NR
Sbjct: 112 ANAARDYLVAKGVASSRISTISYGKDRPTALGDDEDAWAQNR 153


>gi|253990432|ref|YP_003041788.1| peptidoglycan-associated outer membrane lipoprotein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781882|emb|CAQ85046.1| peptidoglycan-associated lipoprotein [Photorhabdus asymbiotica]
          Length = 175

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 15/162 (9%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
            LP ++     + K     Q     ++ T +GL A+ + +  + E          +   N
Sbjct: 22  ALPVMAVAACSSNKNADNDQTGVGTVNETNAGLSAEELARQQMQE----------LQNNN 71

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F         +   +L      L  +    + + GH D    R     N  L   RA
Sbjct: 72  IVYFGFDKYDISSDFSQLLDAHAAFLRSNPSYKVVVEGHADE---RGTPEYNIALGERRA 128

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            +    L   GVS ++IS +S G     +    +   + NRR
Sbjct: 129 NAVKMYLQGKGVSGEQISIVSYGKEKPAVLGHDEAAYAKNRR 170


>gi|104782093|ref|YP_608591.1| periplamic phosphate-binding protein [Pseudomonas entomophila L48]
 gi|95111080|emb|CAK15800.1| putative periplamic phosphate-binding protein [Pseudomonas
           entomophila L48]
          Length = 435

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F + S+    + +  +Q++G+ L H+    E   + G  D   +P R        LS  R
Sbjct: 334 FQEGSASLDNKALRDVQRVGDYLRHAGKLHEQAVLVGFGDPKETPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338
           A +  + L ++GV    +  ++G         +D       NRR+++ V
Sbjct: 389 AMAVRRELARAGVE---VKDVAGMGDELPVAGNDLEQGRLRNRRVEVWV 434


>gi|32475799|ref|NP_868793.1| MotB-like protein [Rhodopirellula baltica SH 1]
 gi|32446342|emb|CAD76170.1| probable MotB homolog [Rhodopirellula baltica SH 1]
 gi|327540987|gb|EGF27543.1| OmpA/MotB domain protein [Rhodopirellula baltica WH47]
          Length = 251

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRNIARDNWR---LSLDR 291
            F+  S +  P +  +L++  + L    + I +RGH  A    R +  D      L++ R
Sbjct: 122 FFEVGSDLLTPASQRILEQTAQQLRGKPQRIEVRGHVSAEYAARTVGTD--EAMLLAIRR 179

Query: 292 AYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS-ANR-RIDILVED 340
           A +  + L+ K G++ DR  ++S          +  +    N  R+++ + D
Sbjct: 180 AAAVKRYLVSKQGIASDRF-RVSSAEATEPITRNATITKFGNDSRVEVFLLD 230



 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/182 (8%), Positives = 56/182 (30%), Gaps = 11/182 (6%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT-KKAIEQYFN----------P 71
            +     +  W + + D M++L+ FF+++  ++   ++   +A+                
Sbjct: 3   DEPEEIGIPEWVVTFGDMMSLLLTFFIMLVSLSEIKEEETYQALVDSMQQQFGYKRTLEA 62

Query: 72  FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131
                       F   +   R+ +                +  +                
Sbjct: 63  LAPGDAKPRSMEFSVLSTTGRAKKKDTARGGVPEKAPIGEEHHVRIVRPGHMTAVGSVVF 122

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
           F + +   +   +  L + +++ +   +  ++   ++ E         +  +LA++R   
Sbjct: 123 FEVGSDLLTPASQRILEQTAQQLRGKPQRIEVRGHVSAEYAARTVGTDEAMLLAIRRAAA 182

Query: 192 LQ 193
           ++
Sbjct: 183 VK 184


>gi|238919302|ref|YP_002932817.1| outer membrane protein A [Edwardsiella ictaluri 93-146]
 gi|238868871|gb|ACR68582.1| outer membrane protein A [Edwardsiella ictaluri 93-146]
          Length = 353

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 18/125 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ +      E    L ++   L+        + + G+TD     +    N +LS
Sbjct: 225 KSDVLFNFNKFTLKAEGRQALDQLYSQLSSMDPKEGSVVVLGYTD--RIGSDQY-NLKLS 281

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNS-AN-----RRIDIL 337
             RA +    L+  G+  ++I+   G         S      P  S  N     RR+ I 
Sbjct: 282 KQRAQTVVDYLVSKGIPANKIAA-RGMGKADPVTGSTCDNVKPRASLINCLAPDRRVVIE 340

Query: 338 VEDRQ 342
           V+  +
Sbjct: 341 VKGTK 345


>gi|146307460|ref|YP_001187925.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp]
 gi|145575661|gb|ABP85193.1| phosphate ABC transporter substrate-binding protein, PhoT family
           [Pseudomonas mendocina ymp]
          Length = 460

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291
           F + S+    +    LQ++ + L         + + G  DA   P R        LS  R
Sbjct: 359 FQEGSATLDNKAQRDLQRVMDYLRQHDKLQGKVVLVGFGDAKSDPERAEL-----LSKLR 413

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
           A +  + L + GV      +++G        A++       NRR+++ V
Sbjct: 414 AMAVRRELARQGVL---FREVTGLGGELPVAANNEEHGRIRNRRVEVWV 459


>gi|330991879|ref|ZP_08315828.1| Outer membrane lipoprotein omp16 [Gluconacetobacter sp. SXCC-1]
 gi|329760900|gb|EGG77395.1| Outer membrane lipoprotein omp16 [Gluconacetobacter sp. SXCC-1]
          Length = 156

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S    +    L K    LA      + I G+ D    R     N  L   R
Sbjct: 51  DRVLFALKQSTLSSDAKAELDKQAAWLAKYPQVHVQIAGNCDD---RGTEEYNIALGERR 107

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A+  L+  GV   R++ IS        +  D  + + NR
Sbjct: 108 ANAAHDYLVAKGVDASRMTTISYGKDRPTAVGDDEASWAQNR 149


>gi|325579032|ref|ZP_08148988.1| peptidoglycan-associated lipoprotein [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159267|gb|EGC71401.1| peptidoglycan-associated lipoprotein [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 155

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           T  G  +  +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 37  TFGGYSVEDLQQRYNTVYFGFDKFNIEGEYVQILDAHAAYLNATPASKVVVEGNTDE--- 93

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 94  RGTPEYNIALGQRRADAVKGFLAGKGVDAGKVSTVS-YGEEKPAVLGHDEAAYSKNRR 150


>gi|260768865|ref|ZP_05877799.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           furnissii CIP 102972]
 gi|260616895|gb|EEX42080.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           furnissii CIP 102972]
 gi|315180558|gb|ADT87472.1| Peptidoglycan-associated lipoprotein [Vibrio furnissii NCTC 11218]
          Length = 179

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
             D   +    E     +      +  T  F   ++    +   +L      L  +    
Sbjct: 54  PMDENAQLSEQELKEQALR-----ETQTIYFAFDNATIASDYEEMLAAHAVYLTKNPSLK 108

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--A 323
           ++I GH D    R     N  L   RA +  + L   GV  D+I+ +S +   +  +   
Sbjct: 109 VTIEGHADE---RGTPEYNIALGERRAQAVAKYLEALGVQADQIAIVS-YGEEKPLLLGQ 164

Query: 324 SDPMNSANRR 333
           ++ + + NRR
Sbjct: 165 TEEVYAKNRR 174


>gi|253570974|ref|ZP_04848382.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839923|gb|EES68006.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|313157091|gb|EFR56521.1| OmpA family protein [Alistipes sp. HGB5]
          Length = 466

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDA---SPFRNIARDNWRLSLDR 291
            F+ +++     + ++ L ++  V       + + G  D+   +P  N +     LS  R
Sbjct: 368 FFNLNTAHLTDASQMLNLDELARVAKKYGLSLRVTGAADSSTGTPVLNGS-----LSTSR 422

Query: 292 AYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
           A      L K G+  +RI K+S  G A H     +
Sbjct: 423 ADYIVAELKKRGIPIERIVKVSRGGIADHVPVEVN 457


>gi|319782061|ref|YP_004141537.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167949|gb|ADV11487.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 743

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQR---NTPMFDKSSSIPLPETIVVLQKIG- 256
             L     + + +    +  +    +  I +R   +T  F+  S+      +  L+ +  
Sbjct: 589 EFLEQPPVEKVQRLYSIDEVKRSARVRDIARRVDLDTLNFEFGSASISDTEVQKLEGVAT 648

Query: 257 ---EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311
              ++L  +  E   I GHTDA         N  LS  RA +  + L  + G+  + ++ 
Sbjct: 649 AMEKLLKKNPAETFLIEGHTDAV---GTPEANLALSDRRAEAVAEALTNAFGIPPENLT- 704

Query: 312 ISGFAHHRLKIASDPMNSANRRIDI 336
             G+    LK+ +   N  NRR+ I
Sbjct: 705 TQGYGEEYLKVNTAAPNRENRRVAI 729


>gi|295096555|emb|CBK85645.1| peptidoglycan-associated lipoprotein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 173

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|224418201|ref|ZP_03656207.1| lipoprotein precursor [Helicobacter canadensis MIT 98-5491]
 gi|253827528|ref|ZP_04870413.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141736|ref|ZP_07803929.1| lipoprotein [Helicobacter canadensis MIT 98-5491]
 gi|253510934|gb|EES89593.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130767|gb|EFR48384.1| lipoprotein [Helicobacter canadensis MIT 98-5491]
          Length = 174

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 225 LISIIDQR-NTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNI 280
            I  ++       F+    +   +   V+     VL         + + G+TD       
Sbjct: 57  RIQYVEGGLQNVFFNFDQFVIRADMQNVVDNDANVLKDVSAAPLSVRVEGNTDEW---GT 113

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338
              N+ L L RA +  + L+  GVSE +I  +S +   +           + NR++   +
Sbjct: 114 DEYNYALGLKRAVAVKEALVAKGVSESKIVLVS-YGESKPTCTQKTRECWAENRKVTFKM 172

Query: 339 ED 340
             
Sbjct: 173 LP 174


>gi|171315861|ref|ZP_02905091.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171098957|gb|EDT43745.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 264

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 17/123 (13%)

Query: 232 RNTPMFDKSSSIP---LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286
           ++  +F    S     LP     L    E +    E   I + GHTD      +   N  
Sbjct: 145 QSDALFAFGKSSLDSMLPAGKAQLDDAIERIKRHKEITRIVVVGHTDRIGPSTV---NEP 201

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILV 338
           LS  RA +    L+  G++   I    G    +         S         +RR+ I V
Sbjct: 202 LSRARAQTVRGYLISHGLNGS-IIDAEGVGSSQPVTHCPAGQSRAVIACLQPDRRVSISV 260

Query: 339 EDR 341
             R
Sbjct: 261 SGR 263


>gi|296127841|ref|YP_003635093.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
 gi|296019657|gb|ADG72894.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563]
          Length = 371

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           N++       T  G  +  +D  +   F   S       +  ++++   L  +    + +
Sbjct: 11  NLLNSFYISKTDIGDKLYFLDNTDIN-FRLGSYGFDRFNLEKVKQVAMFLQANPNTYLIV 69

Query: 269 RGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVS-EDRISKISGFAHHRLKIAS 324
            GH+D  PF N       N  LS  RA +  Q + + G + +DR+  + G+ +   K   
Sbjct: 70  EGHSDYRPFYNETPNGTSNVMLSYYRALAFSQQINEYGANLKDRLIPL-GYGYTNPKYTE 128

Query: 325 DP---MNSANRRID-ILVEDRQ 342
                 ++ NRR++ I+VE ++
Sbjct: 129 RDDYYDHTKNRRLEFIVVESKK 150


>gi|307568444|pdb|3OON|A Chain A, The Structure Of An Outer Membrance Protein From Borrelia
           Burgdorferi B31
          Length = 123

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTD 273
           +  E    GI +S  D      F  +S   L +    +  I ++L       I I GHT+
Sbjct: 4   IEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHTE 58

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFAHHRLKIA-SDPMNSAN 331
                    +    S  RA +    L+K  V  +D+I    G+   + K   S P+ + N
Sbjct: 59  QFGLEEEXHEL---SEKRARAIGNYLIKXKVKDKDQIL-FKGWGSQKPKYPKSSPLKAKN 114

Query: 332 RRIDILVED 340
           RR++I + +
Sbjct: 115 RRVEITILN 123


>gi|293397221|ref|ZP_06641494.1| peptidoglycan-associated lipoprotein [Serratia odorifera DSM 4582]
 gi|291420241|gb|EFE93497.1| peptidoglycan-associated lipoprotein [Serratia odorifera DSM 4582]
          Length = 179

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         E   +L      L ++    +++ GH D    R    
Sbjct: 66  LQMQELQKNNIVYFGLDKYDISSEFAQMLDAHATFLRNNPSYKVTVEGHADE---RGTPE 122

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   S NRR
Sbjct: 123 YNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 174


>gi|282880767|ref|ZP_06289463.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305301|gb|EFA97365.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 314

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 92/268 (34%), Gaps = 23/268 (8%)

Query: 84  FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143
              QN P R+ + +        I+         S++++ +Y  +           Q    
Sbjct: 55  IRNQNRPMRNMRQQTRGRSYRQISPAQTIPVYNSSSRRIEYIPVYVPQVGRVQGFQPYLP 114

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK----- 198
             +L   S   K+  +   L++ I++ +      +  + +     +++++ + K+     
Sbjct: 115 TQNLQPKSSDTKESQEVKQLQEQIDQLQKQI--EVLSQTVKDPTLRQQVESMVKQQNALC 172

Query: 199 ------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT-PMFDKSSSIPLPETIVV 251
                 I    +    +   +          + ++  D       F+ SS     E    
Sbjct: 173 AKKDTVIMRAPANNPTEQCCQEKALVEPAHPVKVTPFDTNLRQVFFEISSKQLSKEAEHT 232

Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  + +VL  +    + + G +           N  L++ R  S    L+  GV+ ++IS
Sbjct: 233 LDAVVDVLKNNRDLKVELTGFSSN---DGPKAFNKDLAMKRMNSVRSYLVNHGVNTNQIS 289

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338
            +S     + ++ +       RR+++ +
Sbjct: 290 ALSYGIDKKSEMKTYA-----RRVELCI 312


>gi|237510234|ref|ZP_04522949.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|235002439|gb|EEP51863.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 230

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 33/172 (19%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVK---GVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           K  +   + +   L    A ++ +    +L + T     I   D   T +F   SS   P
Sbjct: 45  KEYETTKRDMQLALQKEFAKDLKQWNAEILGDMT-----IRFNDP--TVLFATGSSELRP 97

Query: 247 ETIVVLQKI---------GEVLAHSTEVISIRGHTDA-----SPFRNIARDNWRLSLDRA 292
               VL +                + + I I GHT A     +  +     N  LS  R 
Sbjct: 98  RFKQVLGQFFPRYVALLTSAQYKDAVKEIRIEGHTSALWTGTTDEKIAYFRNMELSQART 157

Query: 293 YSAYQVLMK----SGVSEDRISKIS--GFAHHRLKIASDPMNS---ANRRID 335
            SA + L+      G  +  +  ++  G +  R        ++   AN+R++
Sbjct: 158 RSALEYLLSLPAVQGNEKWLVQHVTANGLSSSRPLAQDSQSSASQIANQRVE 209


>gi|90410854|ref|ZP_01218869.1| Putative sodium-type flagellar protein MotY [Photobacterium
           profundum 3TCK]
 gi|90328485|gb|EAS44783.1| Putative sodium-type flagellar protein MotY [Photobacterium
           profundum 3TCK]
          Length = 296

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D  S      +   L +I + + +S ++  + +  ++D++      + N  LS  RA  
Sbjct: 190 YDMDSDELNKPSQRRLAQITDFVRYSDDIDLVLLATYSDST---GGTKVNQSLSERRAKK 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +  M  G+ ++RI ++  +   R    +D     + NRR+ I +
Sbjct: 247 LEEYFMSLGLPKNRI-QVEAYGKRRPIADNDTPIGRNKNRRVVISL 291


>gi|239946700|ref|ZP_04698453.1| peptidoglycan-associated lipoprotein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239920976|gb|EER21000.1| peptidoglycan-associated lipoprotein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 155

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P+    L++    L+       +I GH D    R     N  L   RA  A
Sbjct: 53  FAFDSSALSPKAKEELERQACWLSKHPEVKATIEGHCDE---RGTREYNLGLGERRAAVA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
            + L   G+  +R++ IS        + +     + NRR
Sbjct: 110 KKFLANKGIDHNRLNTISYGKDRPAMMGNTEEAFAYNRR 148


>gi|239815340|ref|YP_002944250.1| membrane-bound proton-translocating pyrophosphatase [Variovorax
           paradoxus S110]
 gi|239801917|gb|ACS18984.1| V-type H(+)-translocating pyrophosphatase [Variovorax paradoxus
           S110]
          Length = 842

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   +   P     L  + + +  S  V+ + G+ DA         N  L+  RA +  
Sbjct: 748 FESGKAEVAPNAKEALADVIKAV-QSGSVLLVSGYHDA---SGDPAKNAELAKQRAVAVG 803

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             L  +G   D+I      A      A  P + A RR+++ V+
Sbjct: 804 DALKAAGAPADKIE----LAKPEQTQADGPASEA-RRVEVKVK 841


>gi|30314436|gb|AAP15427.1| outer membrane lipoprotein precursor [Burkholderia anthina]
          Length = 150

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|289165851|ref|YP_003455989.1| lipoprotein [Legionella longbeachae NSW150]
 gi|288859024|emb|CBJ12952.1| putative lipoprotein [Legionella longbeachae NSW150]
          Length = 239

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           I+      MF+  S          L  I  +L       + + G TD    R   R    
Sbjct: 107 IVPVDKYFMFE--SPRLNEICYPGLINIVRLLKFYPLSPVYVAGFTDDVGTRYHKRS--- 161

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDI 336
           LS  +A +    L  + +   ++ K  G+   +  +  +     ++ NRRI+I
Sbjct: 162 LSQAQAETMLTFLWANNIPA-QLLKAEGYGD-KNDVGDNKLIHGSAFNRRIEI 212


>gi|270159328|ref|ZP_06187984.1| OmpA family outer membrane protein [Legionella longbeachae D-4968]
 gi|269987667|gb|EEZ93922.1| OmpA family outer membrane protein [Legionella longbeachae D-4968]
          Length = 249

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           I+      MF+  S          L  I  +L       + + G TD    R   R    
Sbjct: 117 IVPVDKYFMFE--SPRLNEICYPGLINIVRLLKFYPLSPVYVAGFTDDVGTRYHKRS--- 171

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDI 336
           LS  +A +    L  + +   ++ K  G+   +  +  +     ++ NRRI+I
Sbjct: 172 LSQAQAETMLTFLWANNIPA-QLLKAEGYGD-KNDVGDNKLIHGSAFNRRIEI 222


>gi|94499424|ref|ZP_01305961.1| OmpA family protein [Oceanobacter sp. RED65]
 gi|94428178|gb|EAT13151.1| OmpA family protein [Oceanobacter sp. RED65]
          Length = 465

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F + S+    + +  +Q++   +    +  + + G  D    +N  R    LS  RA + 
Sbjct: 367 FKEGSAKLDNKALKDIQRLAYYMTEHPQQELVLIGFGDRR--KNKERSKL-LSKLRAMAV 423

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDI 336
            + L + G+  D   +  G+  +    A +   +  NRR+++
Sbjct: 424 RRELSRLGIYPD---EAEGYGEYNPVAAFEQSAATKNRRVEV 462


>gi|330446492|ref|ZP_08310144.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490683|dbj|GAA04641.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 279

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S      +   L KI + + +S +V  + +    D+      ++    +S  RA +
Sbjct: 172 YDENSDTLNKISQQRLAKIADFVRYSDDVDLVLVASFNDSLAGTTESQ---DMSEHRAEN 228

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +     G+ EDR+ +I  +   R    +      S NRR+ I +
Sbjct: 229 LRKYFKSLGLPEDRV-QIEAYGKRRPIADNSTPIGRSLNRRVVISL 273


>gi|325107643|ref|YP_004268711.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324967911|gb|ADY58689.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 241

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 8/197 (4%)

Query: 23  IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-----KAIEQYFNPFGKNLM 77
            DD P  +  W + Y D M++L+ FF+++  ++    + K     +A  QY    G    
Sbjct: 2   DDDGPPGVPEWVVTYGDMMSLLLTFFIMLVSLSEVKAEKKYRAIIEAARQYMGYSGAPKA 61

Query: 78  TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137
              K  F   +  +   + K+    D+   +  +  K    +  K  +  E         
Sbjct: 62  PPGKS-FPLNSIVDSLHEMKLGSVSDDDKGRGGIKQKAPPGDDLKVVRLREGESQIAGRP 120

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
              E    +L+    +  D        K    E   F  PL +   +      R+Q    
Sbjct: 121 IVFEPGSTTLSEVDLEQIDTISREVAGKPHKLEIRAFSSPLVQG--MQQTPDNRMQLSYN 178

Query: 198 KISSTLSGLVADNIVKG 214
           +    +  ++ + + K 
Sbjct: 179 RAHEVMDRMLENRVQKD 195


>gi|258543662|ref|YP_003189095.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634740|dbj|BAI00716.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637796|dbj|BAI03765.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640850|dbj|BAI06812.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643905|dbj|BAI09860.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646960|dbj|BAI12908.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650013|dbj|BAI15954.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653003|dbj|BAI18937.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656057|dbj|BAI21984.1| peptidoglycan-associated lipoprotein [Acetobacter pasteurianus IFO
           3283-12]
          Length = 160

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +D + S    +    LQK  + LA      + + G+ D    R     N  L   R
Sbjct: 55  DRVFYDLNKSGLRDDAKDTLQKQADWLAKYPQVNVEVAGNCDD---RGTEEYNIALGQRR 111

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  GV+  RIS IS        +  D    + NR
Sbjct: 112 ANAARDYLVAKGVASSRISTISYGKDRPTALGDDEDAWAQNR 153


>gi|167648617|ref|YP_001686280.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167351047|gb|ABZ73782.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 401

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F     +  PE   V+ +      +     + + GHTD        + N +LS  RA + 
Sbjct: 299 FPFDQYVLTPEAQSVVSEAANYATSGHATKLVVVGHTDT---SGSPKYNAKLSERRAKAV 355

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
              L+ +GV+ D +  +         +A+        NRR  I +
Sbjct: 356 ADALVGAGVAADAL-AVDWKGESAPAVATGDGVKEPLNRRSTISI 399


>gi|311280379|ref|YP_003942610.1| peptidoglycan-associated lipoprotein [Enterobacter cloacae SCF1]
 gi|308749574|gb|ADO49326.1| peptidoglycan-associated lipoprotein [Enterobacter cloacae SCF1]
          Length = 173

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNIALGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|260550724|ref|ZP_05824932.1| LOW QUALITY PROTEIN: small protein A [Acinetobacter sp. RUH2624]
 gi|260406230|gb|EEW99714.1| LOW QUALITY PROTEIN: small protein A [Acinetobacter sp. RUH2624]
          Length = 88

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS--------- 310
           + +T  I + G TD          N +LS  RA +  ++L++ G+   RI          
Sbjct: 6   SQTTNPIIVSGFTDRL---GKFSYNQQLSSQRANTVAKLLVQQGIEASRIQIQANSQTDL 62

Query: 311 --KISGFAHHRLKIASDPMNSANRRIDI 336
             + SG    +L     P    NRR++I
Sbjct: 63  YKQCSGNNSSQLIQCLAP----NRRVNI 86


>gi|153875209|ref|ZP_02003108.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152068328|gb|EDN66893.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 295

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
           + I  +   N+P F   + +        LQ I +    + +   I GH  +        D
Sbjct: 177 LNIKFLFDVNSPEFIDDAGLIKEYM-AWLQMIAQYFQENNQCFQIAGH-CSRTGTATYND 234

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK--ISGFAHHRLKI---ASDPMNSANRRIDILV 338
             +LSL RA +  +++       D + +  + G       +     D  ++ +RR++ILV
Sbjct: 235 --KLSLSRALTVQKLMQA--YLPDIMQRTTVVGKGFRENLVGIGTDDARDAIDRRVEILV 290

Query: 339 ED 340
            +
Sbjct: 291 MN 292


>gi|312959245|ref|ZP_07773763.1| OmpA/MotB [Pseudomonas fluorescens WH6]
 gi|311286505|gb|EFQ65068.1| OmpA/MotB [Pseudomonas fluorescens WH6]
          Length = 302

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I E +        I + GH+D          N  +S  RA +
Sbjct: 178 FPGGGIELDAAAKQKLAVIIEFMKADPTVNHIELNGHSDN---SGNRLSNRDVSRRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                  +G+ E +I+ +         + +
Sbjct: 235 VMDYFKANGIQESQIT-LRFHGESYPLVPN 263


>gi|290473839|ref|YP_003466713.1| outer membrane protein 3a (II*;G;d) [Xenorhabdus bovienii SS-2004]
 gi|289173146|emb|CBJ79919.1| outer membrane protein 3a (II*;G;d) [Xenorhabdus bovienii SS-2004]
          Length = 373

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           R+  +F+ + S    E    L  +   LA        + + GHTD     +    N  LS
Sbjct: 243 RSDVLFNFNKSTLKTEGKQELDNLYTQLAKIDPNQGRVLVIGHTD--RIGSQQY-NLPLS 299

Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334
             RA S    L+  G+    I          ++G          +L     P     RR+
Sbjct: 300 QKRAESVVDYLVAKGIPAASIQAEGRGKEGSVTGSTCDNIKGRAKLIDCLAPD----RRV 355

Query: 335 DILVE 339
            I ++
Sbjct: 356 VINIQ 360


>gi|284097464|ref|ZP_06385561.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283831026|gb|EFC35039.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            F         + + VL++  E+L  +     + I GH D    R     N  L   RA 
Sbjct: 45  FFGYDQYAIRSDAVPVLEEDAELLKSTYKDSAVLIEGHCDE---RGTVEYNLELGKRRAQ 101

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMN-SANRR 333
           +    L+  G+ E RI +I  +   R     S+P     NRR
Sbjct: 102 AVKDYLVDLGIEESRI-RIVSYGKERPFCTESEPSCWRQNRR 142


>gi|256380952|ref|YP_003104612.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827]
 gi|255925255|gb|ACU40766.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827]
          Length = 407

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            ++   N  +F   S + +P     L++I       T    + GHT     R  A+    
Sbjct: 285 EVVTLPNALLFQPDSDVLMPAASAALERIARRFGPGT-TARVTGHT---AHRGAAQGALA 340

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           LS  RA      L+  GV  + ++ + G  +       
Sbjct: 341 LSERRARRVAGALVSLGVPSEALTSVRGVGYAEPVRPE 378


>gi|240948556|ref|ZP_04752929.1| outer membrane protein precursor PalA [Actinobacillus minor NM305]
 gi|240297064|gb|EER47635.1| outer membrane protein precursor PalA [Actinobacillus minor NM305]
          Length = 156

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F   S     E   +L    ++L  +   +++ GH D    R     N  
Sbjct: 49  DLQTRYNTVYFAFDSYAIEGEYRQLLDAHAQLLNATKANVTVAGHADE---RGTPEYNIA 105

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L + G     +S +S +   +  +   ++   + NRR
Sbjct: 106 LGQRRANAVQNYLAQQG--ATNVSTVS-YGEEKPAVLGHTEADYAKNRR 151


>gi|332883362|gb|EGK03645.1| hypothetical protein HMPREF9456_01712 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 23/161 (14%)

Query: 179 SKEKILAMKRKKRLQDLAKKISST------LSGLVADNIVKGVLFETTRTGILISIIDQR 232
             +         ++ +L  +I S       L   +A      ++ E T+      I +Q 
Sbjct: 246 EADPAAIRSMNDKINELRGQIGSKDSEISRLKQELAVKPEPQIVIEKTKE-----IKEQT 300

Query: 233 NTPM-----FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
              M     F   S+       + +      L  +    + + G+ D S     A  N R
Sbjct: 301 EVLMNAVVVFHIGSAKLEKNQDINIYNAARYLKDNPQVNVIVTGYADKS--TGTAAINQR 358

Query: 287 LSLDRAYSAYQVLMKS-GVSEDRI-SKISGFAHHRLKIASD 325
           LS  RA +   VL++  G+S  RI +K SG         +D
Sbjct: 359 LSEQRAEAVANVLVEEYGISRSRITTKASG--DREQLFPTD 397


>gi|296117356|ref|ZP_06835946.1| peptidoglycan-associated lipoprotein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976122|gb|EFG82910.1| peptidoglycan-associated lipoprotein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 157

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+ + +    +    L +    LA      I I G+ D    R     N  L   R
Sbjct: 52  DRVFFELNQNSLSADAKATLDRQAAWLAKYPQVNIQIAGNCDD---RGTEEYNLALGQRR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
           A +A+  L+  GV+  RI+ IS +   R     D     S NR
Sbjct: 109 ANAAHDYLVAKGVAASRITTIS-YGKDRPTAPGDDEASWSQNR 150


>gi|317475717|ref|ZP_07934976.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908100|gb|EFV29795.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 391

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292
           T  F+  S+   P  ++ +  + + +        ++ G+ D++        N  LSL RA
Sbjct: 290 TVFFNIGSAEVSPREVMNISYLAKQMQEFPNATYTVNGYADSA--TGTPEFNKELSLKRA 347

Query: 293 YSAYQVLMKS-GVSEDRI 309
            +   VL+K  G+S DR+
Sbjct: 348 QAVVDVLVKDYGISADRL 365


>gi|291562029|emb|CBL40845.1| Flagellar motor protein [butyrate-producing bacterium SS3/4]
          Length = 313

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 14/204 (6%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGLVA 208
           D++K     KS    ++   E       +S    +  K ++   +DL  +  + L   +A
Sbjct: 39  DAQKWTIFVKSIPNIQNQGSENITINSQMSDTPEVDSKGQEIGQEDLQAEDVNKLYLTIA 98

Query: 209 DNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266
           +++ +  + E T   G   + +   N   F  +SS+   E   VL    + +A +   I 
Sbjct: 99  ESLNQAGVKEATVIRGDDYTYVSFANNVFFGANSSVLTREGQAVLYTFAKAIAPAAGGIE 158

Query: 267 --SIRGHT----DASPFR-NIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFAHH 318
             +I  HT    D S     I R +  LS  R+      L +  V   +++  IS +  +
Sbjct: 159 QVNIMSHTAKVTDNSQINPQIIRKDRILSAMRSAEVCIYLQQQNVIKPEKLVDIS-YGEY 217

Query: 319 RLKIASDPMNSA--NRRIDILVED 340
           R    +        NRRI+ L+ D
Sbjct: 218 RPIADNSTEEGRIKNRRIEFLLLD 241


>gi|54307256|ref|YP_128276.1| hypothetical protein PBPRA0019 [Photobacterium profundum SS9]
 gi|46911676|emb|CAG18474.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 290

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +   S++     +     I E +    S + + I G++D+     +   N R+S +RA  
Sbjct: 181 YPSGSTLVSKLDVRTAYGIAEYVKVIRSIKKVLIDGYSDSQGRSTV---NLRISRERAEE 237

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI-LVED 340
              +L++ GV   ++ +I           +        NRR+ + L+++
Sbjct: 238 VAALLIEFGV-PQKMIQIRSHGDRYPIADNALADGRKKNRRVTVRLIKN 285


>gi|89073344|ref|ZP_01159868.1| Putative sodium-type flagellar protein MotY [Photobacterium sp.
           SKA34]
 gi|89050831|gb|EAR56305.1| Putative sodium-type flagellar protein MotY [Photobacterium sp.
           SKA34]
          Length = 285

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S      +   L +I + + +S ++  + +    D+      ++    +S  RA    Q 
Sbjct: 182 SDTLNKISQQRLAQIADFVRYSDDIDLVLVAAFNDSISGTTESQ---EMSERRAEKLRQY 238

Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS-DPMNS-ANRRIDILV 338
               G+ ++R+ ++  +   R    +  PM    NRR+ I +
Sbjct: 239 FQSLGLPDERV-QVEAYGKRRPIADNSTPMGRNLNRRVVISL 279


>gi|300715890|ref|YP_003740693.1| peptidoglycan-associated lipoprotein Pal, OmpA family of porins
           [Erwinia billingiae Eb661]
 gi|299061726|emb|CAX58842.1| Peptidoglycan-associated lipoprotein Pal, OmpA family of porins
           [Erwinia billingiae Eb661]
          Length = 172

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         E   +L      L  +    +++ GH D    R    
Sbjct: 59  LQMQELQKNNIVYFGLDKYDIQSEFAQMLDAHANFLRSNPSYKVTVEGHADE---RGTPE 115

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   + NRR
Sbjct: 116 YNIALGERRATAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDESAYAKNRR 167


>gi|146310897|ref|YP_001175971.1| peptidoglycan-associated outer membrane lipoprotein [Enterobacter
           sp. 638]
 gi|145317773|gb|ABP59920.1| OmpA domain protein [Enterobacter sp. 638]
          Length = 173

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 73  FDLDKFDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 129

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
              L   GVS D+IS +S G     +    +   S NRR
Sbjct: 130 KMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168


>gi|198282622|ref|YP_002218943.1| OmpA/MotB domain-containing protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667641|ref|YP_002424813.1| OmpA family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247143|gb|ACH82736.1| OmpA/MotB domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519854|gb|ACK80440.1| OmpA family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 217

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S   L   I VL ++        E +  + G+            N +LS  RA S 
Sbjct: 108 FKFDSYKLLDHDIRVLDEVASFAKKHPEAVLDVNGYCSKV---GTYAYNLKLSKLRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            Q L   GV+ DR+  + G ++      +        N+R++I
Sbjct: 165 AQYLAHHGVASDRMV-LKGHSYDNPVATNATPQGRFLNQRVEI 206


>gi|46397588|gb|AAS91725.1| OmpA [Bibersteinia trehalosi]
          Length = 364

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L       + L  +   I + G+TD          N  LS  RA
Sbjct: 244 LFDFGKANLKPAAAASLDAAHAEIQNLGLAAPAIQVNGYTDRI---GKDAPNLALSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            S    ++  GV+ + I+ + G+        +  D +            +RR+++ V+  
Sbjct: 301 ESVANYMVSKGVAPESITAV-GYGKANPVTGNTCDAVKGRKALIACLAPDRRVELQVQGS 359

Query: 342 Q 342
           +
Sbjct: 360 K 360


>gi|56551062|ref|YP_161901.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761362|ref|ZP_04759450.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753277|ref|YP_003226170.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56542636|gb|AAV88790.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374269|gb|EER63766.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552640|gb|ACV75586.1| peptidoglycan-associated lipoprotein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 176

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S     E   +L +  +         ++I GH D    R     N  L   RA + 
Sbjct: 75  FALNSHDLDSEAKAILDREIQWFKKYPSTRVTIEGHCDE---RGTREYNIALGEKRADAV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
              L K+GV  + I+ IS      L + SD  + + NRR
Sbjct: 132 RDYLAKAGV-ANSINVISYGKERPLAMGSDEESWAQNRR 169


>gi|303256189|ref|ZP_07342205.1| peptidoglycan-associated outer-membrane lipoprotein
           [Burkholderiales bacterium 1_1_47]
 gi|331001245|ref|ZP_08324871.1| peptidoglycan-associated lipoprotein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860918|gb|EFL83993.1| peptidoglycan-associated outer-membrane lipoprotein
           [Burkholderiales bacterium 1_1_47]
 gi|329568972|gb|EGG50768.1| peptidoglycan-associated lipoprotein [Parasutterella
           excrementihominis YIT 11859]
          Length = 163

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+ + V+    + LA      + + G+TD    R     N  L   RA + 
Sbjct: 59  FDFDSYTVSPDQMPVVTNHAQFLAAHKNLNVRLEGNTDE---RGGREYNLALGQKRAEAV 115

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
            + +   GVS  +I  IS +   + K       +   NRR+DI
Sbjct: 116 KERMTLLGVSPQQIETIS-YGKEKPKAEGHDEAAYYENRRVDI 157


>gi|315127493|ref|YP_004069496.1| hypothetical protein PSM_A2431 [Pseudoalteromonas sp. SM9913]
 gi|315016007|gb|ADT69345.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 241

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS   P     L ++  +L       + + G  D    R   + N  LS  R  + 
Sbjct: 128 FKTGSSDIAPHFAKQLDQLVALLKSQPQLALDLSGFADQ---RGEEQANLLLSKARVNAV 184

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDI 336
              L+K GVS  R+S    F   +    S+ +   N   RR+ +
Sbjct: 185 QSYLIKQGVSHTRLSA-QAFGEQQSIANSNTLED-NFFDRRVTL 226


>gi|225621015|ref|YP_002722273.1| putative peptidoglycan-associated outer membrane lipoprotein
           [Brachyspira hyodysenteriae WA1]
 gi|225215835|gb|ACN84569.1| putative peptidoglycan-associated outer membrane lipoprotein
           [Brachyspira hyodysenteriae WA1]
          Length = 243

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
                 T  +  I K++   +    KEK      + ++   A++    L+   A    K 
Sbjct: 42  NSQSTKTASKTYIQKDDITTVADPIKEKKEYTNTQAQVSKKAEEKKEELTNNDALEEEKP 101

Query: 215 VLFETTRTGILISIIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268
            + + T    +I   D       N   FD  S     E    + +I + L +     + I
Sbjct: 102 QVIKQTE---VIQKDDNEILLTANIISFDFDSYELKNEYNEGIDEICKYLNNNRDINLII 158

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
            GH+D+      +  N  LS +RA + +  L+  G+ +DR+ +  G+        +D
Sbjct: 159 EGHSDSI---GDSNYNIYLSENRAKAIFDKLVDKGIDKDRL-RYIGYGSTHSSEYND 211


>gi|323445947|gb|EGB02315.1| hypothetical protein AURANDRAFT_68995 [Aureococcus anophagefferens]
          Length = 664

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           +I  +   +T  F   SS     +  VL  +  VLA     V+ + GH   SP       
Sbjct: 64  VIQELRVSDTVQFAACSSDVTDGSAGVLDAVARVLAERPHLVVRVEGHCCTSPM------ 117

Query: 284 NW------RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            W       L+ DRA +    L   GV  D++ +  GF        ++     NRR +  
Sbjct: 118 -WGSTTIEELAADRAEAVVAALAARGVPRDQL-RPRGFGADLPVDVAN--KRLNRRTEFH 173

Query: 338 VED 340
           V D
Sbjct: 174 VVD 176


>gi|183219680|ref|YP_001837676.1| hypothetical protein LEPBI_I0255 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909816|ref|YP_001961371.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774492|gb|ABZ92793.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778102|gb|ABZ96400.1| Hypothetical protein LEPBI_I0255 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 348

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I D +    F K S          +  + E L       + ++GHT    F     +N  
Sbjct: 235 INDLQIR--FIKQSMATEDGAADKIATLAEALKTYPSIKVRVKGHTC---FIGEMDENKI 289

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           LS +RA   Y  L+K+GV++ ++    GF        +   +    NRR+D  V  
Sbjct: 290 LSDERAKFIYDELIKNGVNQSQLD-YRGFGETAEIDTNQTESGRIKNRRVDFTVLS 344


>gi|260912914|ref|ZP_05919399.1| peptidoglycan-associated lipoprotein [Pasteurella dagmatis ATCC
           43325]
 gi|260632904|gb|EEX51070.1| peptidoglycan-associated lipoprotein [Pasteurella dagmatis ATCC
           43325]
          Length = 151

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           T  G  +  +  + NT  F         E + +L      L+ +    + + G+TD    
Sbjct: 33  TFGGYSVQDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAYLSATPATKVVVEGNTDE--- 89

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 90  RGTPEYNIALGQRRADAVQNYLSAKGVQAGQVSTVS-YGEEKPAVLGHDEAAYSKNRR 146


>gi|222148525|ref|YP_002549482.1| OmpA family protein [Agrobacterium vitis S4]
 gi|221735511|gb|ACM36474.1| OmpA family protein [Agrobacterium vitis S4]
          Length = 880

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+         L+K+ +    VL         I GHTDA      A  N  LS  R
Sbjct: 765 FATGSADISMNQAGTLKKVADAIVRVLKDDPGETFLIEGHTDAV---GSAESNLVLSDRR 821

Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S   VL +  G+  + +    G+    LK+ +      NRR+ +
Sbjct: 822 AESVANVLTQVYGIPPENMI-TQGYGEQFLKVMTYGPEQQNRRVTV 866


>gi|327399255|ref|YP_004340124.1| PA14 domain-containing protein [Hippea maritima DSM 10411]
 gi|327181884|gb|AEA34065.1| PA14 domain protein [Hippea maritima DSM 10411]
          Length = 554

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 12/83 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F++ S    PE I VL KI +++    + I+I G  D             LS DR  S 
Sbjct: 475 LFEEYSDRLKPEGIKVLMKIKKLIGEKYKSINIYGRDD------------ELSKDRIKSI 522

Query: 296 YQVLMKSGVSEDRISKISGFAHH 318
             +L+  G+   RI K  G    
Sbjct: 523 VNMLVGFGIDPSRIRKYYGLGDS 545


>gi|46397578|gb|AAS91717.1| OmpA [Bibersteinia trehalosi]
 gi|46397583|gb|AAS91721.1| OmpA [Bibersteinia trehalosi]
          Length = 364

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L       + L  +   I + G+TD          N  LS  RA
Sbjct: 244 LFDFGKANLKPAAAASLDAAHAEIQNLGLAAPAIQVNGYTDRI---GKDAPNLALSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            S    ++  GV+ + I+ + G+        +  D +            +RR+++ V+  
Sbjct: 301 ESVANYMVSKGVAPESITAV-GYGKANPVTGNTCDAVKGRKALIACLAPDRRVELQVQGS 359

Query: 342 Q 342
           +
Sbjct: 360 K 360


>gi|322435990|ref|YP_004218202.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163717|gb|ADW69422.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 260

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    ++        L  +   L  +   +  + G TD+      A+ N++LS  RA + 
Sbjct: 140 FGFDKTVLTKSDKEQLDGLAASLQSARGYLLEVTGGTDSV---GDAQYNYKLSQRRADAV 196

Query: 296 YQVL-MKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
              L  K  V   +   +  G         +    + NRR+++ +  
Sbjct: 197 VDYLSAKYNVPPHKFYLVGIGKDAQIASDKTASGRAQNRRVEVKLMS 243


>gi|90025228|gb|ABD85117.1| OmpA [Actinobacillus suis H91-0380]
          Length = 373

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVL----QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 253 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 308

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+ 
Sbjct: 309 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQG 367

Query: 341 RQ 342
            +
Sbjct: 368 SK 369


>gi|255605082|ref|XP_002538335.1| conserved hypothetical protein [Ricinus communis]
 gi|223512676|gb|EEF24048.1| conserved hypothetical protein [Ricinus communis]
          Length = 210

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 232 RNTPMFDKSSSI---PLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWR 286
            +  +F    S     LP     L +I   +        I++ GHTD          N  
Sbjct: 127 ESDALFPFGKSAAYTMLPSAKAELDEIAARIRKHEQVSAIAVVGHTDRL---GPESLNGP 183

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISK 311
           LSL RA +    L+  G+    I  
Sbjct: 184 LSLARANTVRDYLIAHGLDGSIIEA 208


>gi|56476929|ref|YP_158518.1| outer membrane protein, porin-associated lipoprotein [Aromatoleum
           aromaticum EbN1]
 gi|56312972|emb|CAI07617.1| Outer membrane protein, porin-associated lipoprotein [Aromatoleum
           aromaticum EbN1]
          Length = 175

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
            + +  FD    +  PE   +++     L  + +  + I+G+TD          N  L  
Sbjct: 65  SKRSVFFDFDQFVIKPEARPLVEAHARFLVQNPQMKMLIQGNTDEL---GSREYNLALGQ 121

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            RA +  Q L   G  E +I  +S     + +      +  + NRR
Sbjct: 122 KRADAVRQALTLLGAKESQIESVS-LGEEKPRCGESSESCFAQNRR 166


>gi|322515688|ref|ZP_08068661.1| outer membrane protein P5 [Actinobacillus ureae ATCC 25976]
 gi|322118233|gb|EFX90525.1| outer membrane protein P5 [Actinobacillus ureae ATCC 25976]
          Length = 360

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L  +   + ++      I + G+TD          N +LS  RA
Sbjct: 240 LFAFGKSNLKPAAAQALDAMQAEINNAGLANAAIQVNGYTDRI---GKEASNLKLSQRRA 296

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341
            +    ++  G S   ++ + G+        +               + +RR+++ V+  
Sbjct: 297 ETVANYIVSKGASAANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQGS 355

Query: 342 Q 342
           +
Sbjct: 356 K 356


>gi|307250689|ref|ZP_07532626.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857297|gb|EFM89416.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 368

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 248 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 303

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+
Sbjct: 304 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 361


>gi|225872180|ref|YP_002753635.1| OmpA family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792320|gb|ACO32410.1| OmpA family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 245

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S    P+   ++Q+    L       + I G+ D    R     N  L  +RA +A
Sbjct: 145 FDSYS--VRPDAQAIIQQDANYLIQHPNLHVVIGGYCDD---RGSVEYNLALGENRANAA 199

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333
            Q L+ +GVS DR+  +S     +     +     +NRR
Sbjct: 200 KQALVSAGVSPDRLRTVSYGKEKQFCTEQNESCWQSNRR 238


>gi|126208885|ref|YP_001054110.1| outer membrane protein P5 precursor [Actinobacillus
           pleuropneumoniae L20]
 gi|126097677|gb|ABN74505.1| outer membrane protein P5 precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 368

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 248 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 303

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+
Sbjct: 304 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 361


>gi|83815923|ref|YP_445040.1| hypothetical protein SRU_0906 [Salinibacter ruber DSM 13855]
 gi|83757317|gb|ABC45430.1| conserved protein [Salinibacter ruber DSM 13855]
          Length = 323

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           + + N+  FD++SS    E    LQ+  ++L+      + + G   A+P     R+   L
Sbjct: 212 VSEMNSAFFDRNSSTLTEEGEESLQENADILSDCPNLSVQVEGF--AAP---GERNVQSL 266

Query: 288 SLDRAYSAYQVLMKSGVSEDRIS-----KISG 314
           S DRA +       +GV   RI      ++ G
Sbjct: 267 SEDRAEAVSSFYQNNGVPGSRIMTSGQGQVEG 298


>gi|303250857|ref|ZP_07337050.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253079|ref|ZP_07534962.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|302650272|gb|EFL80435.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859448|gb|EFM91478.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 371

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 251 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 306

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+
Sbjct: 307 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 364


>gi|228472824|ref|ZP_04057582.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275875|gb|EEK14641.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 393

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVADNIVK 213
            +  +LE+ +   E+      S    LA K  ++   +      +I   L   + +    
Sbjct: 209 SEGKELERKLQAAEDRIAKAESDVANLAKKLDEKEDRMVDTNGNRIPDELENYLNEKYGS 268

Query: 214 GVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
               +  T       I        FD +SS P   ++  +  +   L  ++   ++  G+
Sbjct: 269 NAQNKYATGDAARELIEKGYINVYFDFNSSKPQKSSLWAVDFVANYLKQNSGASVNAVGY 328

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331
            D    +     N +LS  RA    Q+L+  G++  ++    G    +   A +  N+  
Sbjct: 329 ADE---KGSENYNQKLSAKRAEVIKQLLVDRGINASQL-SFEGKGEDKTVNA-NSSNARQ 383

Query: 332 --RRID 335
             RR+ 
Sbjct: 384 LARRVT 389


>gi|165976856|ref|YP_001652449.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303253773|ref|ZP_07339908.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248471|ref|ZP_07530491.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307257499|ref|ZP_07539265.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165876957|gb|ABY70005.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302647357|gb|EFL77578.1| major outer membrane protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855039|gb|EFM87222.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306864011|gb|EFM95928.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 368

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 248 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 303

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+
Sbjct: 304 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 361


>gi|320107635|ref|YP_004183225.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319926156|gb|ADV83231.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4]
          Length = 249

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 6/107 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    ++        L  +   L  +   +  + G TDA      A  N+ LS  RA + 
Sbjct: 131 FRFDKAVLTAADKKELDAVASSLQTTRHYLLEVTGGTDAV---GDAAYNYALSQRRADAV 187

Query: 296 YQVLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
              L     +   +   +  G         +    + NRR+ + V  
Sbjct: 188 VTYLAAKYNIPPHKFYMVGIGKDQEVATNKTAAGRAKNRRVQVRVLS 234


>gi|291613389|ref|YP_003523546.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291583501|gb|ADE11159.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 163

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 224 ILISIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281
           +   I         FD +      E + V+QK  E L      V++++G+ D    R   
Sbjct: 46  LNAEIQQMEKQSDYFDFNKYTVKSEYMNVIQKEAEFLKTHKNDVVTLQGNADE---RGSE 102

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
           + N  L  +RA +  +VL K GV  D+I  +S G    RL    +     NRR+D L
Sbjct: 103 KYNLGLGENRADAVAKVLEKDGVPADQIKMVSLGKDKPRLTCHKEKCWKENRRVDFL 159


>gi|33152784|ref|NP_874137.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Haemophilus ducreyi 35000HP]
 gi|1150840|gb|AAC44382.1| 18 kDa outer membrane protein [Haemophilus ducreyi]
 gi|33149008|gb|AAP96526.1| 18K peptidoglycan-associated outer membrane lipoprotein
           [Haemophilus ducreyi 35000HP]
          Length = 157

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
            +  + NT  F+  S     E   +L      L  S   +++ GH D    R     N  
Sbjct: 50  DLQTRYNTVYFNFDSYAVEGEYRQLLDAHAAYLTSSNSKVTVTGHADE---RGTPEYNIA 106

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   RA +    L   GVS  ++S +S +   +  +   ++   + NRR
Sbjct: 107 LGQRRADAVKNYLATKGVS--QVSTVS-YGEEKPSVLGHTEADYAKNRR 152


>gi|307246344|ref|ZP_07528422.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255330|ref|ZP_07537142.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307259780|ref|ZP_07541500.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852754|gb|EFM84981.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861717|gb|EFM93699.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306866170|gb|EFM98038.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 369

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 249 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 304

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+
Sbjct: 305 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 362


>gi|237731623|ref|ZP_04562104.1| outer membrane protein A [Citrobacter sp. 30_2]
 gi|226907162|gb|EEH93080.1| outer membrane protein A [Citrobacter sp. 30_2]
          Length = 348

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKI--GEVLAHSTEVISIR-GHTDASPFRNIARD 283
              + ++  MF   S+   PE    + ++     L  + +  ++  G++D +     A  
Sbjct: 224 QRFNLKSDVMFGYDSAALTPEGKAAIAQLYRNPGLQPAKDKATVVIGYSDRT---GAADY 280

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           N +LS  RA +    L+  G+    I+   G    
Sbjct: 281 NQQLSAQRAQAVADELVALGMPAANITA-QGHGSS 314


>gi|85709689|ref|ZP_01040754.1| Photosystem I P700 chlorophyll A apoprotein A2 [Erythrobacter sp.
           NAP1]
 gi|85688399|gb|EAQ28403.1| Photosystem I P700 chlorophyll A apoprotein A2 [Erythrobacter sp.
           NAP1]
          Length = 198

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +    + +  L++I           I +  H+D+         N R +  R  + 
Sbjct: 76  FPDGGAELDDDALAALEQIANSEQIALGGPIVLGAHSDSD---GSDSANERAAEARGLAV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--------IASDPMNSANRRIDILV 338
              L++ GV EDRI  I  F                ++   + NRR+++LV
Sbjct: 133 AGWLIERGVDEDRIDVIV-FGEQNPAEPNALPDGSPNEEGRALNRRVEVLV 182


>gi|219853797|ref|YP_002470919.1| hypothetical protein CKR_0454 [Clostridium kluyveri NBRC 12016]
 gi|219567521|dbj|BAH05505.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 248

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 35/175 (20%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSS 241
           ++K+L++L  ++   +   V  +I++ +       G+ I+I      I   +  +F+ + 
Sbjct: 60  QQKQLKNLRLQVEKVIG--VRQSIIEDIRKSFQNAGLDINIDKNTGDIVFSSDVLFEFNK 117

Query: 242 SIPLPETIVVLQKIGE----VLAH-----STEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +   PE    L K       VL       S   I I GHTD          N  LS  RA
Sbjct: 118 ADIRPEFKSNLDKFIPQYVNVLTSPKYISSVSEIVIEGHTDNI---GDYNYNMDLSQKRA 174

Query: 293 YSAYQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNSAN----RRI 334
            S    ++ +               I   +G +  +L   SD   S N    RR+
Sbjct: 175 NSIVNYILNNNFKNLDSYSKENLKNIITANGRSKSQLIKNSD--GSVNQEKSRRV 227


>gi|194336954|ref|YP_002018748.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309431|gb|ACF44131.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 519

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S +        + +I  VL+      + + + G  DA       + N  L+  RA 
Sbjct: 418 FRADSEVLDTRANRDIGRIVAVLSQPKYKDKRVVLIGFADA---AGSIKHNKELAQKRAE 474

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
                L++ GV   + ++++G         +D       NRRI++ V+
Sbjct: 475 VVATALIEEGV---QCAEVTGVGAEAFVAPNDTQENREKNRRIEVWVK 519


>gi|309244379|gb|ADO52194.1| OprL [Pseudomonas cichorii]
 gi|309244381|gb|ADO52195.1| OprL [Pseudomonas cichorii]
          Length = 156

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEALRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150


>gi|257126467|ref|YP_003164581.1| hypothetical protein Lebu_1722 [Leptotrichia buccalis C-1013-b]
 gi|257050406|gb|ACV39590.1| hypothetical protein Lebu_1722 [Leptotrichia buccalis C-1013-b]
          Length = 197

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 19/178 (10%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
           + N +                K+ ++   + +K     + +V D +   +  E  +  + 
Sbjct: 9   AKNDQTEQAEKYYKIAIQNGSKKAEKNLKILEKFPLMSNPMVMDYLAWDIPMEDAKGELK 68

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIR--GHTDASPFRNIAR 282
           ISI        F ++           ++ I  ++     E   +   G++D +       
Sbjct: 69  ISIRG------FKENGKDLNEFERNRMKGIVRKIWNKLYESADLEFIGYSDNT------- 115

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           +N +LSL+RA    ++  +SG+ ++ RI K+ G         +D +     NRR++I+
Sbjct: 116 ENKKLSLERAKRLAELFRESGLKDEMRIVKVLGKGSENSSDTNDTVEGRYNNRRVEII 173


>gi|51246716|ref|YP_066600.1| peptidoglycan-associated lipoprotein [precursor] [Desulfotalea
           psychrophila LSv54]
 gi|50877753|emb|CAG37593.1| related to peptidoglycan-associated lipoprotein [Precursor]
           [Desulfotalea psychrophila LSv54]
          Length = 177

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  SS    +    +Q   + + A+   ++ I G+TD+   R     N  L   RA SA
Sbjct: 75  FNFDSSAVGEDQKPRVQVNADFMDANVDYMVRIEGNTDS---RGTDEYNMALGERRALSA 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338
            Q LM  GV E R++ +S +   RL +     ++   NRR D +V
Sbjct: 132 QQYLMDLGVEEARLTTVS-YGKERLLLNGQSEDAWSQNRRCDFVV 175


>gi|170717596|ref|YP_001783489.1| peptidoglycan-associated lipoprotein [Haemophilus somnus 2336]
 gi|168825725|gb|ACA31096.1| Peptidoglycan-associated lipoprotein [Haemophilus somnus 2336]
          Length = 151

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
           +  +  + NT  F+  S     E   +L      L  +    + + GH D    R     
Sbjct: 39  VTDLQQRYNTVYFEFDSYDVQGEYAQILDAHSAYLKSTPASKVLVEGHADE---RGTPEY 95

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333
           N  L L RA +    L+  GV   ++S +S +   +      ++   S NRR
Sbjct: 96  NMALGLRRADAVKNFLLNKGVQASQLSTLS-YGEEKPAELGHNEAAYSKNRR 146


>gi|46397593|gb|AAS91729.1| OmpA [Bibersteinia trehalosi]
          Length = 364

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L       + L  +   I + G+TD          N  LS  RA
Sbjct: 244 LFDFGKANLKPAAAASLDAAHAEIQNLGLAAPAIQVNGYTDRI---GKDAPNLALSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            S    ++  GV+ + I+ + G+        +  D +            +RR+++ V+  
Sbjct: 301 ESVANYMVSKGVAPESITAV-GYGKANPVTGNTCDAVKGRKALIACLAPDRRVELQVQGS 359

Query: 342 Q 342
           +
Sbjct: 360 K 360


>gi|84515254|ref|ZP_01002616.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
 gi|84510537|gb|EAQ06992.1| OmpA domain protein [Loktanella vestfoldensis SKA53]
          Length = 497

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+    + +  +Q++ + L    +    I I G TD          N RL+L RA 
Sbjct: 391 FASGSANLDNKALEDVQRMVDFLNSPAARNREILIIGFTDDV---GRFDLNERLALLRAG 447

Query: 294 SAYQVLM---KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
           S    L+      V   R + ++ +        +D  +    NRR++I
Sbjct: 448 SVRNALVTALGGDVLAGR-TSVASYGPLAPVGCNDTADGRESNRRVEI 494


>gi|1332435|emb|CAA63037.1| outer membrane protein [Aeromonas salmonicida]
 gi|1588799|prf||2209353B major outer membrane protein OmpAII
          Length = 330

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE +  L  +               + G+TD     + A  N +LS  RA
Sbjct: 210 LFAFGKSTLKPEGVAALNTLYHQNVDVQPKDGSAVVVGYTD--RIGSDAY-NLKLSEARA 266

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G+   ++  I G         +  D + +          +RR+++ V   
Sbjct: 267 RTVADFLVGKGLPAGKV-AIEGRGEASPVTGTQCDGIKAKAQLIACLAPDRRVEVRVTGI 325

Query: 342 Q 342
           Q
Sbjct: 326 Q 326


>gi|29467513|dbj|BAC66780.1| OmpA-like outer membrane protein [Acidithiobacillus ferrooxidans]
          Length = 217

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S   L   I VL ++     +  E +  + G+            N +LS  RA S 
Sbjct: 108 FKFDSYKLLDHDIRVLDEVASFAKNHPEAVLDVNGYCSKV---GTYAYNLKLSKLRAQSV 164

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            Q L   GV+ DR+  + G ++      +        N+R++I
Sbjct: 165 AQYLAHHGVASDRMV-LKGHSYDNPVATNATPQGRFLNQRVEI 206


>gi|116750906|ref|YP_847593.1| OmpA/MotB domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699970|gb|ABK19158.1| OmpA/MotB domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 522

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S    +  + + +  E L H     + I+GHT           N  LS +R+ + 
Sbjct: 413 FQSGTSDLSFQGKLEIDRAVERLKHYPNFRVVIKGHTGTE---GDPEANKTLSRERSEAV 469

Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSAN-R--RIDILVED 340
            + L     ++ +R+  + GF   +       +   S N R  R+++++  
Sbjct: 470 ARYLEVTYNINPNRLLPV-GFGGEKPLPRNPGESTRSYNYRLPRVEMVLVR 519


>gi|307262353|ref|ZP_07543999.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306867901|gb|EFM99731.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 334

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L  +   + ++      I + G+TD          N +LS  RA
Sbjct: 244 LFAFGKSNLKPAAATALDAMQTEINNAGLSNAAIQVNGYTDRI---GKEASNLKLSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            +    ++  G     ++ + G+      
Sbjct: 301 ETVANYIVSKGAPAANVTAV-GYGEANPV 328


>gi|161523636|ref|YP_001578648.1| cytochrome c oxidase subunit II [Burkholderia multivorans ATCC
           17616]
 gi|189351595|ref|YP_001947223.1| cytochrome c oxidase subunit II [Burkholderia multivorans ATCC
           17616]
 gi|160341065|gb|ABX14151.1| cytochrome c oxidase, subunit II [Burkholderia multivorans ATCC
           17616]
 gi|189335617|dbj|BAG44687.1| cytochrome c oxidase subunit II [Burkholderia multivorans ATCC
           17616]
          Length = 532

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      +        AH    +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSALPADAKAAIAAAADYANAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDRIILKKPETITGGADAKEA----------RRVEI 528


>gi|134294843|ref|YP_001118578.1| OmpA domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134138000|gb|ABO53743.1| OmpA domain protein [Burkholderia vietnamiensis G4]
          Length = 170

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 125 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 167


>gi|320540573|ref|ZP_08040223.1| putative outer membrane protein A (3a;II*;G;d) [Serratia symbiotica
           str. Tucson]
 gi|320029504|gb|EFW11533.1| putative outer membrane protein A (3a;II*;G;d) [Serratia symbiotica
           str. Tucson]
          Length = 382

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S    E    L+++   L+        + + G+TDA       + N +LS
Sbjct: 252 KSDVLFNFNKSTLKAECQQSLEQLYTQLSSMDPKDGSVIVLGYTDAV---GSEQYNHKLS 308

Query: 289 LDRAYSAYQVLMKSGVSEDRIS-KISGFAHH-----------RLKIASDPMNSANRRIDI 336
             RA S    L+  G+  D+IS +  G A             R   A     + +RR++I
Sbjct: 309 EKRAQSVVDFLISKGIPSDKISARGLGKADSTTGNTCGYKSGRATKAQIDCLAPDRRVEI 368

Query: 337 LVE 339
            V+
Sbjct: 369 EVK 371


>gi|190150781|ref|YP_001969306.1| outer membrane protein P5 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307264101|ref|ZP_07545698.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189915912|gb|ACE62164.1| outer membrane protein P5 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870579|gb|EFN02326.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 369

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 249 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 304

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
           A +    L+  G +   ++ + G+        +               + +RR+++ V+
Sbjct: 305 AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDKVKGRKALIACLAPDRRVEVQVQ 362


>gi|145628739|ref|ZP_01784539.1| scaffold protein [Haemophilus influenzae 22.1-21]
 gi|144979209|gb|EDJ88895.1| scaffold protein [Haemophilus influenzae 22.1-21]
          Length = 153

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 43  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPATKVLVEGNTDE---RGTPEYNI 99

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 100 ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 148


>gi|319942535|ref|ZP_08016845.1| outer membrane protein A [Sutterella wadsworthensis 3_1_45B]
 gi|319803938|gb|EFW00856.1| outer membrane protein A [Sutterella wadsworthensis 3_1_45B]
          Length = 222

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +F+   +    E   VL  +   +A     + +  G+ D     + A  N +LS  RA +
Sbjct: 101 LFNFDKATLKDEGRAVLDDLVSRVAGVDLEVILTTGYAD--RIGSDAY-NLKLSQRRADA 157

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA--------------NRR--IDIL 337
               L++ GV    I    G       +   +P  +               NRR  ++++
Sbjct: 158 VKAYLVQKGVDAALIKS-EGKGEADPVVNCPNPSKAGQVKTFKELVQCLQPNRRAVVEVV 216


>gi|313500679|gb|ADR62045.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1]
          Length = 217

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 13/179 (7%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVAD-NIVKGVLFET 219
           +L +S      Y  P    +    M++    L    + +   L+   AD N  +  L   
Sbjct: 32  ELVESPAAPVPYVAPSAQGQNTAQMQQTINALNIEIQSLRVRLAAAEADANGSRQELLAI 91

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASP 276
                 I       T  F    S   P         G+VL   A     + I G TD+  
Sbjct: 92  RARQDQIQTSINHMTLNFAFGHSRFSPSAED-----GDVLVRSAQDALQVKIVGFTDSVG 146

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
                  N R++L RA +A   L++ GV   +IS       +     +    +ANRR++
Sbjct: 147 TVEA---NRRVALLRAQAAKMYLVRRGVPAAKISAEGQEGDYIAANDTPAGRAANRRVE 202


>gi|213950522|gb|ACJ54534.1| outer membrane protein A [Haemophilus parasuis]
          Length = 305

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 222 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 278

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL 320
            +    ++  GV+   ++ + G+     
Sbjct: 279 ETVANYIVSKGVNPANVTAV-GYGEANP 305


>gi|33151319|ref|NP_872672.1| major outer membrane protein homolog, OmpA2 [Haemophilus ducreyi
           35000HP]
 gi|1872471|gb|AAB49274.1| OmpA2 [Haemophilus ducreyi]
 gi|33147539|gb|AAP95061.1| major outer membrane protein-like protein, OmpA2 [Haemophilus
           ducreyi 35000HP]
          Length = 407

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 18/118 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + +    E   VL     E+  L  +T  I + G+TD          N +LS  RA
Sbjct: 287 LFDFAKADLKQEAAQVLDATNAEIVNLGLATPAIQVNGYTDRI---GKEEANLKLSQRRA 343

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
                 L+  G +   I+ + G+        +               + +RR+++ V+
Sbjct: 344 EMVANYLVAKGQNPVSINAV-GYGEANPITGNTCDAVKGRKQLIACLAPDRRVEVQVQ 400


>gi|294506913|ref|YP_003570971.1| PKD repeat protein [Salinibacter ruber M8]
 gi|294343241|emb|CBH24019.1| PKD repeat protein [Salinibacter ruber M8]
          Length = 324

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           + + N+  FD++SS    E    LQ+  ++L+      + + G   A+P     R+   L
Sbjct: 213 VSEMNSAFFDRNSSTLTEEGEESLQENADILSDCPNLSVQVEGF--AAP---GERNVQSL 267

Query: 288 SLDRAYSAYQVLMKSGVSEDRIS-----KISG 314
           S DRA +       +GV   RI      ++ G
Sbjct: 268 SEDRAEAVSSFYQNNGVPGSRIMTSGQGQVEG 299


>gi|126442214|ref|YP_001057542.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 668]
 gi|134279592|ref|ZP_01766304.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 305]
 gi|126221707|gb|ABN85213.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 668]
 gi|134248792|gb|EBA48874.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 305]
          Length = 525

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E V AH    +++ G TD +     A  N  L+  RA   
Sbjct: 429 FETGKSELPADAKDAIAAAAEYVRAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 485

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 486 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 521


>gi|30314442|gb|AAP15430.1| outer membrane lipoprotein precursor [Burkholderia pyrrocinia]
          Length = 149

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 146


>gi|317491198|ref|ZP_07949634.1| peptidoglycan-associated lipoprotein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920745|gb|EFV42068.1| peptidoglycan-associated lipoprotein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 171

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
           +G   +N    +  E     + +  + + N   F         +   +L      L ++ 
Sbjct: 39  AGNGMENGSSNLSSEEQAR-LQMQELQKNNIVYFGLDKYDVSSDYAQMLDAHAAFLRNNP 97

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLK 321
              +++ GH D    R     N  L   RA +    L   GV  D+IS +S G     + 
Sbjct: 98  SYKVTVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVGADQISIVSYGKEKPAVL 154

Query: 322 IASDPMNSANRR 333
              +   + NRR
Sbjct: 155 GHDEAAYAKNRR 166


>gi|193227219|gb|ACF16394.1| outer membrane protein P6 [Pasteurella pneumotropica]
          Length = 156

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
           T  G  +  +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 38  TFGGYSVEDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAYLNATPASKVIVEGNTDE--- 94

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++S +S +   +  +    +   S NRR
Sbjct: 95  RGTPEYNIALGQRRADAVKSFLAGKGVEGSKVSTVS-YGEEKPAVLGHDEAAYSKNRR 151


>gi|197103803|ref|YP_002129180.1| OmpA family protein [Phenylobacterium zucineum HLK1]
 gi|196477223|gb|ACG76751.1| OmpA family protein [Phenylobacterium zucineum HLK1]
          Length = 410

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F     +  PE   V+ +        +   + + GH D          N RLS  RA + 
Sbjct: 308 FPFDQYVLTPEAQQVVTEAANYAKGGNATRVVVVGHADT---SGSQAYNVRLSERRAKAV 364

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
              L+ SGV++  +  +         +A+        NRR  IDI
Sbjct: 365 ADALVGSGVNQTSL-SVDWKGETMPAVATGDGVKEPLNRRSTIDI 408


>gi|153870593|ref|ZP_01999962.1| hypothetical protein BGP_3582 [Beggiatoa sp. PS]
 gi|152072944|gb|EDN70041.1| hypothetical protein BGP_3582 [Beggiatoa sp. PS]
          Length = 322

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 88/276 (31%), Gaps = 48/276 (17%)

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
           +++L+     ++     +           Q E    +     E+ +    S      + +
Sbjct: 36  AIELERARAAEETNQHLMAQFESCGQQKAQIETLGQTCQNQLEQNEKTAGSNLKNLMLCR 95

Query: 170 EENYFLPPLSKE----------KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           ++   L     +           I  +   K+ +DL       ++  ++  +++ +  + 
Sbjct: 96  QQKTRLEDKLGQLGDNLQQCQIAIEQVDETKKREDLRVAFGRIITQALS--VLEKLKTKM 153

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPET------IVVLQKIGEVLAHS---------TE 264
             + + I I  + +   FD   S P  +T        VL  I +                
Sbjct: 154 -ESNLPIHIDRRPDRLFFDMGVSFPFNQTQIPAPQRRVLIDIAKTFRDILDSRVSIKKPN 212

Query: 265 ----------VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKI 312
                      + + GH D    ++    N+R+S +RA+   Q+LM  G  V       +
Sbjct: 213 GQPYYLREIMQVVVEGHADYKRSKHDKLINYRVSKERAFKVMQLLMDEGGIVPPKYKMSM 272

Query: 313 SGFAH--HRLKIASDPM------NSANRRIDILVED 340
           +GFA    + K+               RR+ I +  
Sbjct: 273 AGFAEYGRQPKLNEQEKQDEQQIRRRMRRVTISIVP 308


>gi|218510720|ref|ZP_03508598.1| probable outer membrane lipoprotein [Rhizobium etli Brasil 5]
 gi|218517107|ref|ZP_03513947.1| probable outer membrane lipoprotein [Rhizobium etli 8C-3]
          Length = 178

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L  +   ++ ++G  D S   +  +    LS  RA
Sbjct: 68  RIYFKQDSATLDSVAMATLDNQAAWLNRNPTWLLKLQGFADDSGSASKMQT---LSQKRA 124

Query: 293 YSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPM-NSANRRI 334
            +A   L   GV   R+    G+     ++  +D      NRR+
Sbjct: 125 DAAMAYLASKGVDPKRMWA-KGYGNDREVRDCTDRSCKVQNRRV 167


>gi|167901146|ref|ZP_02488351.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei NCTC
           13177]
          Length = 507

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E V AH    +++ G TD +     A  N  L+  RA   
Sbjct: 411 FETGKSELPADAKDAIAAAAEYVRAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 467

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 468 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 503


>gi|58040120|ref|YP_192084.1| peptidoglycan-associated lipoprotein [Gluconobacter oxydans 621H]
 gi|58002534|gb|AAW61428.1| Peptidoglycan-associated lipoprotein [Gluconobacter oxydans 621H]
          Length = 159

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   ++ + S    E    L K    LA      I + G+ D    R     N  L   R
Sbjct: 54  DRVFYELNQSQLSEEARATLDKQVAWLAKYPQVSIQVAGNCDD---RGTEEYNIALGQRR 110

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  GVS  RI+ IS           D  + + NR
Sbjct: 111 ANAARDYLVAKGVSASRITTISYGKDRPTADGDDEQSWAQNR 152


>gi|254454899|ref|ZP_05068336.1| outer membrane protein, OmpA/MotB family [Octadecabacter
           antarcticus 238]
 gi|198269305|gb|EDY93575.1| outer membrane protein, OmpA/MotB family [Octadecabacter
           antarcticus 238]
          Length = 147

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F   S+   P+    L  +G  +          +  I G+TDA      A  N  LS  R
Sbjct: 38  FPSGSAAIQPDQSRELAILGTAIKDLIVERPGEVFLIEGYTDAV---GAAGYNLALSDRR 94

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           A +    L +   V    +    G+    LK+ +     ANRR
Sbjct: 95  AETVALALTQYFDVPPANLV-TQGYGESLLKVQTLEAEQANRR 136


>gi|268315879|ref|YP_003289598.1| PKD domain containing protein [Rhodothermus marinus DSM 4252]
 gi|262333413|gb|ACY47210.1| PKD domain containing protein [Rhodothermus marinus DSM 4252]
          Length = 317

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           + + N   FD++SS+        LQ+  ++L       + + G   A+P     R+  +L
Sbjct: 208 VTEMNPVFFDRNSSVLNDAARSALQENLQILQDCPNLSVRVEGW--AAP---GERNPQQL 262

Query: 288 SLDRAYSAYQVLMKSGVSEDRIS-----KISG 314
           S DRA +  Q    +G+   RI+     +++G
Sbjct: 263 STDRARAVEQFYTSNGIPASRITTVSRGRVTG 294


>gi|153000353|ref|YP_001366034.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185]
 gi|151364971|gb|ABS07971.1| OmpA/MotB domain protein [Shewanella baltica OS185]
          Length = 276

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              ++A   + ++    ERS  N +D S      + + + +            L   +  
Sbjct: 19  VASVSARVSLQNQAQGQERSLDNDVDASGMAMDGEYANEDEQPEALIGLGGGALVGALVG 78

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                       +L   S    D       + S+ + +   L  LS ++  A KR     
Sbjct: 79  GPVGAIIGAFTGTLIGKSVSDTDTLHVQQRQISLQESQ---LSELSVKQQAAEKRASEYA 135

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              +++   LS        +  L      G+ +          F   SS      +  L 
Sbjct: 136 KAQQELDELLS-------AQRQLLSELALGLNVQ---------FRTGSSEVESHFLPQLD 179

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + EV+  S E  + ++G+ D    R     N  LS  R       L+K GV+ +R++  
Sbjct: 180 DVAEVMNLSPELNLELKGYADR---RGDVSYNQALSEQRLLEVRGYLIKQGVAAERMTTQ 236

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDILVED 340
           +  A   L+   D  +   +RR+ + ++ 
Sbjct: 237 AFGALSPLQAEQDRESDVFDRRVTLTLQP 265


>gi|30314434|gb|AAP15426.1| outer membrane lipoprotein precursor [Burkholderia ambifaria]
          Length = 149

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRAMALLGVNDSQMEAVSLGKEKPQASGHDEASWAQNRRADLV 146


>gi|145640334|ref|ZP_01795918.1| scaffold protein [Haemophilus influenzae R3021]
 gi|145274920|gb|EDK14782.1| scaffold protein [Haemophilus influenzae 22.4-21]
          Length = 153

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 43  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 99

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 100 ALGQRRADAVKGYLTGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 148


>gi|145636351|ref|ZP_01792020.1| outer membrane protein P6 precursor [Haemophilus influenzae PittHH]
 gi|145270516|gb|EDK10450.1| outer membrane protein P6 precursor [Haemophilus influenzae PittHH]
          Length = 153

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 43  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 99

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 100 ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 148


>gi|16272329|ref|NP_438542.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae Rd KW20]
 gi|68248984|ref|YP_248096.1| outer membrane protein P6 [Haemophilus influenzae 86-028NP]
 gi|145630448|ref|ZP_01786229.1| outer membrane protein P6 precursor [Haemophilus influenzae R3021]
 gi|145632628|ref|ZP_01788362.1| scaffold protein [Haemophilus influenzae 3655]
 gi|145634623|ref|ZP_01790332.1| outer membrane protein P6 precursor [Haemophilus influenzae PittAA]
 gi|145638710|ref|ZP_01794319.1| outer membrane protein P6 precursor [Haemophilus influenzae PittII]
 gi|148825337|ref|YP_001290090.1| outer membrane protein P6 [Haemophilus influenzae PittEE]
 gi|229844456|ref|ZP_04464596.1| outer membrane protein P6 precursor [Haemophilus influenzae 6P18H1]
 gi|229846468|ref|ZP_04466576.1| outer membrane protein P6 precursor [Haemophilus influenzae 7P49H1]
 gi|260580556|ref|ZP_05848384.1| peptidoglycan-associated lipoprotein [Haemophilus influenzae RdAW]
 gi|260582355|ref|ZP_05850148.1| peptidoglycan-associated lipoprotein [Haemophilus influenzae NT127]
 gi|319775690|ref|YP_004138178.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae F3047]
 gi|319898097|ref|YP_004136294.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae F3031]
 gi|329122256|ref|ZP_08250844.1| peptidoglycan-associated lipoprotein [Haemophilus aegyptius ATCC
           11116]
 gi|129596|sp|P10324|PAL_HAEIN RecName: Full=Outer membrane protein P6; Short=OMP P6; AltName:
           Full=15 kDa peptidoglycan-associated lipoprotein;
           Short=PC protein; Flags: Precursor
 gi|148860|gb|AAA24940.1| PC protein precursor [Haemophilus influenzae]
 gi|148961|gb|AAA24994.1| outer membrane protein P6 precursor [Haemophilus influenzae]
 gi|1573351|gb|AAC22039.1| peptidoglycan-associated outer membrane lipoprotein (pal)
           [Haemophilus influenzae Rd KW20]
 gi|68057183|gb|AAX87436.1| outer membrane protein P6 precursor [Haemophilus influenzae
           86-028NP]
 gi|144984183|gb|EDJ91620.1| outer membrane protein P6 precursor [Haemophilus influenzae R3021]
 gi|144986823|gb|EDJ93375.1| scaffold protein [Haemophilus influenzae 3655]
 gi|145268168|gb|EDK08163.1| outer membrane protein P6 precursor [Haemophilus influenzae PittAA]
 gi|145272305|gb|EDK12213.1| outer membrane protein P6 precursor [Haemophilus influenzae PittII]
 gi|148715497|gb|ABQ97707.1| outer membrane protein P6 precursor [Haemophilus influenzae PittEE]
 gi|229810561|gb|EEP46279.1| outer membrane protein P6 precursor [Haemophilus influenzae 7P49H1]
 gi|229812705|gb|EEP48394.1| outer membrane protein P6 precursor [Haemophilus influenzae 6P18H1]
 gi|260092898|gb|EEW76833.1| peptidoglycan-associated lipoprotein [Haemophilus influenzae RdAW]
 gi|260094723|gb|EEW78618.1| peptidoglycan-associated lipoprotein [Haemophilus influenzae NT127]
 gi|301169083|emb|CBW28680.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae 10810]
 gi|309750200|gb|ADO80184.1| Peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae R2866]
 gi|309972460|gb|ADO95661.1| Peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae R2846]
 gi|317433603|emb|CBY81987.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae F3031]
 gi|317450281|emb|CBY86497.1| peptidoglycan-associated outer membrane lipoprotein [Haemophilus
           influenzae F3047]
 gi|327473817|gb|EGF19234.1| peptidoglycan-associated lipoprotein [Haemophilus aegyptius ATCC
           11116]
          Length = 153

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 43  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 99

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 100 ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 148


>gi|327479120|gb|AEA82430.1| outer membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 187

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 241 SSIPLPETIVVLQK--IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S         +L    +         V+++ GHTD    R     N ++ + RA    ++
Sbjct: 90  SGELDAGAEQLLDSVLLAARRRDYP-VVTVIGHTDTLGHRAA---NEQVGMRRAQRMAEL 145

Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           L   G+    + ++       L +          NRR+++LV
Sbjct: 146 LRARGLEAMEL-RVESHGERNLLVATPDATAEPRNRRVEVLV 186


>gi|259090535|gb|ACV91890.1| OprL [Pseudomonas fluorescens]
 gi|259090539|gb|ACV91892.1| OprL [Pseudomonas fluorescens]
 gi|259090545|gb|ACV91895.1| OprL [Pseudomonas fluorescens]
 gi|259090553|gb|ACV91899.1| OprL [Pseudomonas fluorescens]
 gi|259090561|gb|ACV91903.1| OprL [Pseudomonas fluorescens]
 gi|259090573|gb|ACV91909.1| OprL [Pseudomonas fluorescens]
 gi|259090575|gb|ACV91910.1| OprL [Pseudomonas fluorescens]
 gi|259090581|gb|ACV91913.1| OprL [Pseudomonas fluorescens]
          Length = 157

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKGNGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGN 151


>gi|225628536|ref|ZP_03786570.1| lipoprotein [Brucella ceti str. Cudo]
 gi|237816578|ref|ZP_04595570.1| lipoprotein [Brucella abortus str. 2308 A]
 gi|225616382|gb|EEH13430.1| lipoprotein [Brucella ceti str. Cudo]
 gi|237787391|gb|EEP61607.1| lipoprotein [Brucella abortus str. 2308 A]
          Length = 104

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLD 290
           ++  +F  +S+         + ++  +L    + I++RG TD + P         +++  
Sbjct: 5   QDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARV 52

Query: 291 RAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           RA + Y  L+  GV   RI    + +  +A +       P    NRR+DI +  +
Sbjct: 53  RALAIYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 104


>gi|322379220|ref|ZP_08053611.1| Peptidoglycan-associated lipoprotein [Helicobacter suis HS1]
 gi|321148360|gb|EFX42869.1| Peptidoglycan-associated lipoprotein [Helicobacter suis HS1]
          Length = 181

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
               F         +   ++ +  + +  S   + + G+TD   F +    N+ L+  RA
Sbjct: 75  GQVYFSFDKYDIRADMESIIDQAAQKIKESQMKVLLEGNTDE--FGSGEY-NFALANKRA 131

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVED 340
            S  Q L+  G+++D I ++      +   +  +      NRR+DI V +
Sbjct: 132 LSVKQALIIKGIAQDTI-RVVSLGETKPSCQEKNKTCYRKNRRVDIKVVE 180


>gi|259090543|gb|ACV91894.1| OprL [Pseudomonas fluorescens]
 gi|259090577|gb|ACV91911.1| OprL [Pseudomonas fluorescens]
 gi|259090579|gb|ACV91912.1| OprL [Pseudomonas fluorescens]
          Length = 156

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150


>gi|332521031|ref|ZP_08397491.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043561|gb|EGI79757.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 638

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 91/279 (32%), Gaps = 19/279 (6%)

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDE-----HITKNSVDLKIGSTNQKKQYQRLENNI 131
           +  ++        P  SS++  +  IDE     ++T N  + K      K Q Q     I
Sbjct: 364 LEGNRKTVANLGKPINSSRDDFEFIIDEFTNLGYLTSNRYNGKGDDDIYKFQRQVCNQLI 423

Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191
                 + +       T      ++                         K +A K    
Sbjct: 424 AGTVVDKNTNQVIPDATVIVYNSENKEVYRFNSDQNGAFSYNSDCKKGTYKAVASKEGYE 483

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
            ++L   I   +   +A  +           G  + ++   N   FD   S   P+  V 
Sbjct: 484 PEELKYSIDPEIKLDLALKLNLTPEKRAAEVGTDLFVLLDLNPIYFDFDKSYIRPDAQVE 543

Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRI 309
           LQK+   L       I ++ HTD+   R     N  LS  R  S    +++ G +S+ RI
Sbjct: 544 LQKVINYLNEYPSVSIDVQSHTDS---RGRDAYNKSLSQRRNTSTKNWIIEKGKISKSRI 600

Query: 310 SKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341
           S   G+   +L          S+  +  NRR  + +  +
Sbjct: 601 SG-RGYGETQLVNRCSNGVKCSEEEHQQNRR-SMFIVTK 637


>gi|306841163|ref|ZP_07473879.1| lipoprotein [Brucella sp. BO2]
 gi|306288789|gb|EFM60107.1| lipoprotein [Brucella sp. BO2]
          Length = 129

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 20/121 (16%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDN 284
           IS+   ++  +F  +S+         + ++  +L    + I++RG TD + P        
Sbjct: 24  ISVYFPQDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPTPGDT--- 72

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++  RA + Y  L+  GV   +I    + +  +A +       P    NRR+DI +  
Sbjct: 73  -QVARVRALAIYNWLINQGVPASKITISYAPVKDYASNAPLS---PGRVLNRRVDIEILR 128

Query: 341 R 341
           +
Sbjct: 129 K 129


>gi|306845321|ref|ZP_07477896.1| lipoprotein [Brucella sp. BO1]
 gi|306274237|gb|EFM56049.1| lipoprotein [Brucella sp. BO1]
          Length = 129

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 20/121 (16%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDN 284
           +S+   ++  +F  +S+         + ++  +L    + I++RG TD + P        
Sbjct: 24  VSVYFPQDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPTPGDT--- 72

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVED 340
            +++  RA + Y  L+  GV   RI    + +  +A +       P    NRR+DI +  
Sbjct: 73  -QVARVRALAIYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILR 128

Query: 341 R 341
           +
Sbjct: 129 K 129


>gi|30314444|gb|AAP15431.1| outer membrane lipoprotein precursor [Burkholderia pyrrocinia]
          Length = 149

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 146


>gi|114775594|ref|ZP_01451162.1| hypothetical protein SPV1_04678 [Mariprofundus ferrooxydans PV-1]
 gi|114553705|gb|EAU56086.1| hypothetical protein SPV1_04678 [Mariprofundus ferrooxydans PV-1]
          Length = 198

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD +S+   P       K+  +         I +RG+TDA         N  L+  RA +
Sbjct: 97  FDFNSATIKPNEK---TKLAGLFKDIGRNTTIILRGYTDA---AGGMAYNQHLAWRRAQA 150

Query: 295 AYQVLMKSGVSEDRISKISGF---AHHRLKIASDPM-NSANRRIDILV 338
             + L       + + +  G+   A  +   A  P     NRR++I +
Sbjct: 151 VRRWL------SEHLERQPGYEIRAFGKCCYARQPGLRPENRRVEIYI 192


>gi|89092902|ref|ZP_01165854.1| ompA family protein [Oceanospirillum sp. MED92]
 gi|89082927|gb|EAR62147.1| ompA family protein [Oceanospirillum sp. MED92]
          Length = 617

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS--PFRNIARDNWRLSLDRAY 293
           F   +     +    LQ++ +    +      + G +D+   P  N +     LSL RA 
Sbjct: 506 FHSGTFQLDNKAERDLQRVVDFFEKNPGQQAMLIGFSDSIGDPAANAS-----LSLQRAK 560

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  + L+  G++   I    G        ++        NRR++I V
Sbjct: 561 AVERALLARGIN---IQTTLGMGEAAPIASNQTRIGRERNRRVEIWV 604


>gi|299773237|gb|ADJ38693.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 362

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L     E++        + + G+TD          N  LS  RA
Sbjct: 245 LFDFGKANLKPAAAQTLDAAHTEIVNLGLENPAVQVNGYTDRI---GKDAANLTLSQKRA 301

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    ++  GV+   ++ + G+        +
Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGN 332


>gi|295675611|ref|YP_003604135.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1002]
 gi|295435454|gb|ADG14624.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1002]
          Length = 168

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 66  FDFDSYSVKDDYQPLLQQHAQYLKGHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            + L   GVS+ ++  +S     +           + NRR
Sbjct: 123 RRSLSLMGVSDSQMEAVS-LGKEKPLATGHDEASWAQNRR 161


>gi|16127459|ref|NP_422023.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|221236272|ref|YP_002518709.1| peptidoglycan-associated lipoprotein pal [Caulobacter crescentus
           NA1000]
 gi|13424913|gb|AAK25191.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|220965445|gb|ACL96801.1| peptidoglycan-associated lipoprotein pal [Caulobacter crescentus
           NA1000]
          Length = 188

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286
           +++  +   FD    +   +   VL    + L   +   I I G+ D    R     N  
Sbjct: 74  VVNIGDRVYFDTDEYVIRADAQPVLAGQAQWLNRYSSVRIRIEGNADE---RGTREYNLA 130

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANR 332
           L   RA +    L+  GVS  RI  IS F   R      S+   + NR
Sbjct: 131 LGARRANAVRDFLIAQGVSSARIETIS-FGKERPIDPGSSEEAWAKNR 177


>gi|329117903|ref|ZP_08246617.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465984|gb|EGF12255.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 172

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S++        LQ+   +L      +++ G+ D  P   +  +N RL+  RA S  
Sbjct: 86  FRTDSAVLSAHEKQALQRAAPMLRQQG--VTLSGYAD--PRAGVEYNN-RLAARRAESVA 140

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS 324
           + L   GV   R+++   F   RL  + 
Sbjct: 141 RYLDGLGV---RVNRRCIFGETRLPDSD 165


>gi|78189006|ref|YP_379344.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Chlorobium chlorochromatii CaD3]
 gi|78171205|gb|ABB28301.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Chlorobium chlorochromatii
           CaD3]
          Length = 183

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD + S         L++    +       I I GH D    R     N  L   RA S
Sbjct: 81  FFDFNKSELGTTRNEQLKRNANWIKAHPTSNIIIEGHCDE---RGTNEYNIALGERRANS 137

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
           A   ++  GV   R++ +S +   +     +++   + NRR+
Sbjct: 138 AKDYMVTLGVDPARLTTVS-YGEEKPVAIGSTEEAWAQNRRV 178


>gi|212635870|ref|YP_002312395.1| OmpA protein [Shewanella piezotolerans WP3]
 gi|212557354|gb|ACJ29808.1| OmpA [Shewanella piezotolerans WP3]
          Length = 249

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           K +   L     E     +  + L  L+ +       L +  + +         G+ +  
Sbjct: 77  KTQQVMLESKQSELAALNEENQSLIALSSQYEDAQQQLTSLKMAQEQKLTELALGLNVQ- 135

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
                   F   SS   P     L  +   ++ S E  + + G+ D    R     N  L
Sbjct: 136 --------FKTGSSTIEPHFQQQLDDVAYAMSLSPELTLDLTGYADR---RGDGDYNQAL 184

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDILVED 340
           S  R       L+  GV+ +R++    +       A    N  N    RR+ + ++ 
Sbjct: 185 SEQRVAEVTNYLVAQGVANERLN-YQAYGASSPLTAE--QNFENDFFDRRVTLKLQS 238


>gi|30314450|gb|AAP15434.1| outer membrane lipoprotein precursor [Burkholderia cepacia]
          Length = 150

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|225159124|ref|ZP_03725430.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
 gi|224802279|gb|EEG20545.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2]
          Length = 199

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            I D   +  F    S    E    +Q     L    +  + + G  D   +R  A  N 
Sbjct: 88  QIRDAVQSVYFAFDQSAVRQEERAKIQDAQNYLNAHPDQRVLLEGRCD---WRGTAEYNL 144

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            L   RA S  Q L   G++ +RI  +S      ++ A     + +RR+D +
Sbjct: 145 GLGDRRANSVRQYLQDLGIAANRIEILSKGDLEAVENADAATAAKDRRVDFV 196


>gi|30314418|gb|AAP15418.1| outer membrane lipoprotein precursor [Burkholderia cenocepacia]
 gi|30314424|gb|AAP15421.1| outer membrane lipoprotein precursor [Burkholderia cenocepacia]
 gi|30314448|gb|AAP15433.1| outer membrane lipoprotein precursor [Burkholderia cenocepacia]
          Length = 150

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|319942877|ref|ZP_08017160.1| cytochrome c oxidase, subunit II [Lautropia mirabilis ATCC 51599]
 gi|319743419|gb|EFV95823.1| cytochrome c oxidase, subunit II [Lautropia mirabilis ATCC 51599]
          Length = 205

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+    +    +  + E L  +    + + G+ D  P  NI   N  L+  RA   
Sbjct: 109 FESASATLPADAQKAIATVVEALKAAEGRRVLLAGYHD--PTGNIDF-NRDLAKRRALGV 165

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDILVED 340
              L+  G+   RI          L+       S N    RR++IL+ D
Sbjct: 166 RDALIAQGIPAQRII---------LRKPEQTTGSGNNAEARRVEILLID 205


>gi|220921480|ref|YP_002496781.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219946086|gb|ACL56478.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 666

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291
           FD  S    P+    L  I E +  + +        I G+TDA        DN  LS  R
Sbjct: 551 FDSGSWQIAPDQARRLAVIAEAIGRAVQRNPQEVFLIEGYTDAV---GNDVDNLSLSDRR 607

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A     VL +            G+    LK+ +   +  NRR+ +
Sbjct: 608 AQEVATVLTRDFRVPPENLTTQGYGEQYLKVNTQEASRENRRVTV 652


>gi|261417437|ref|YP_003251120.1| hypothetical protein Fisuc_3058 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373893|gb|ACX76638.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327827|gb|ADL27028.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 243

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 31/196 (15%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQ 231
             +  ++K+  +  +   + QD   +I   L     D++ V G   ++    +  + I  
Sbjct: 39  ALVWQITKQDNIKKQAINKYQDTRDEIYKELKSTFKDSLNVWGAELDSATLTVRFNEIAL 98

Query: 232 RNTP-MFDKSSSIPLPETIVVLQKI---------GEVLAHSTEVISIRGHTDASPFRNIA 281
             TP +F    ++  P    +++           GE      E I I GHTD++P  ++ 
Sbjct: 99  DGTPVLFASGDTLLPPRYKSMMKFFFPKYLEILDGEKFREHIEEIRIEGHTDSTPCYSLC 158

Query: 282 RD-------NWRLSLDRAYSAYQV-LMKSGVSED----RISK----ISGFAHHRLKIASD 325
           +        N  LS  R+ +  +  L ++ VS+D      ++     +G +  + +   +
Sbjct: 159 KTLERNYLYNMNLSQARSRNVLRYGLTETDVSKDTTLLEFARKYIIATGLSFSQPRATQE 218

Query: 326 PMNSANRRIDILVEDR 341
                +RR++I V  +
Sbjct: 219 ----KSRRVEIRVRTK 230


>gi|312115743|ref|YP_004013339.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220872|gb|ADP72240.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 789

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+   +LQ I + +          +  I GHTDA        DN  LS  R
Sbjct: 661 FEFGSWEVRPDQAPLLQGIADSVNRIVQNNPGEVFLIEGHTDAV---GTDEDNLSLSDRR 717

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           A +   VL +            G+    L + +
Sbjct: 718 AQAVADVLTQYYQVPRENLVTQGYGEQFLLVPT 750


>gi|113460409|ref|YP_718471.1| peptidoglycan-associated outer membrane lipoprotein (outer membrane
           protein P6) [Haemophilus somnus 129PT]
 gi|112822452|gb|ABI24541.1| peptidoglycan-associated outer membrane lipoprotein (outer membrane
           protein P6) [Haemophilus somnus 129PT]
          Length = 135

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283
           +  +  + NT  F+  S     E   +L      L  +    + + GH D    R     
Sbjct: 23  VTDLQQRYNTVYFEFDSYDVQGEYAQILDAHSAYLKSTPASKVLVEGHADE---RGTPEY 79

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333
           N  L L RA +    L+  GV   ++S +S +   +      ++   S NRR
Sbjct: 80  NMALGLRRADAVKNFLLNKGVQASQLSTLS-YGEEKPAELGHNEAAYSKNRR 130


>gi|86130223|ref|ZP_01048823.1| type VI secretion system OmpA/MotB family protein [Dokdonia
           donghaensis MED134]
 gi|85818898|gb|EAQ40057.1| type VI secretion system OmpA/MotB family protein [Dokdonia
           donghaensis MED134]
          Length = 228

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 46/175 (26%)

Query: 196 AKKISSTLSGLVADNIVKGV----LFETTRTGILISIIDQRNT---PMFDKSSSIPLPET 248
              I    S  +A+ I K +      + T+   +I+   + N+   P F      P    
Sbjct: 69  KTHIDREASIFIAEEIQKSIAISDTVDFTKDEPVITFEKELNSLSGPSFSSEVFYPQYNN 128

Query: 249 IVVL---------QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN------------WR 286
             ++          ++ E+L ++ +  ++I GHTD       ARDN            W 
Sbjct: 129 TDLILDKELVAYASELKELLKNNPDKKVTILGHTDNV---GNARDNFSTGLKKSRQIKWY 185

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           L+  R           G+   +I+  +         +++       N RI+I+V+
Sbjct: 186 LTARR-----------GIPRSKITA-TSRGEEEPIASNNTVSGRRQNNRIEIIVD 228


>gi|114330317|ref|YP_746539.1| OmpA/MotB domain-containing protein [Nitrosomonas eutropha C91]
 gi|114307331|gb|ABI58574.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91]
          Length = 173

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++      L  +    + ++G+TD    R     N  L   RA S 
Sbjct: 69  FDFDSYTVKGEYRDLVLAHAAYLRDNLNAQVLLQGNTDE---RGSREYNLALGQRRANSV 125

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
             +L+ SG  + ++  +S G    R   + +   + NRR DIL
Sbjct: 126 KDILLLSGARDQQVEAVSLGEEKPRALGSDESSWAENRRTDIL 168


>gi|294787634|ref|ZP_06752878.1| cytochrome c oxidase, Cbb3-type, subunit III [Simonsiella muelleri
           ATCC 29453]
 gi|294483927|gb|EFG31610.1| cytochrome c oxidase, Cbb3-type, subunit III [Simonsiella muelleri
           ATCC 29453]
          Length = 478

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 20/110 (18%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S           ++ +  A + + + I G TD++     A  N +LS +RA +  
Sbjct: 383 FAVGKSAIAANAEKATGEVVKA-AKAGKKLVISGFTDST---GNAVANEKLSKNRAQAVQ 438

Query: 297 QVLMKSGVSEDRI------SKISGFAHHRLKIASDPMNSANRRIDILVED 340
             L+K GV +D +      S +               N+  RR+++ ++D
Sbjct: 439 AYLIKQGVKKDSMVLRKPESSVGAKG----------NNAEGRRVEVKIQD 478


>gi|146342461|ref|YP_001207509.1| hypothetical protein BRADO5620 [Bradyrhizobium sp. ORS278]
 gi|146195267|emb|CAL79292.1| Putative outer membrane protein [Bradyrhizobium sp. ORS278]
          Length = 222

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD  + I  PE+   + +I + +           I GH +A+        N  LS  RA 
Sbjct: 91  FDVDTPIVRPESYQTVGRIADAMVYADLLPYTFLIVGHIEAN---GKRESNVILSQRRAD 147

Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +   +L  +  +S  R+  + G    +L   S P    N++I I+
Sbjct: 148 AIRDILANTFKISVKRLQSV-GLGEEQLLDPSKPTAPINQQIQII 191


>gi|30314426|gb|AAP15422.1| outer membrane lipoprotein precursor [Burkholderia ambifaria]
 gi|30314428|gb|AAP15423.1| outer membrane lipoprotein precursor [Burkholderia ambifaria]
 gi|30314452|gb|AAP15435.1| outer membrane lipoprotein precursor [Burkholderia ambifaria]
          Length = 149

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 47  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 103

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 104 RRAMALLGVNDSQMEAVSLGKEKPQASGHDEASWAQNRRADLV 146


>gi|88861313|ref|ZP_01135944.1| outer membrane protein [Pseudoalteromonas tunicata D2]
 gi|88816692|gb|EAR26516.1| outer membrane protein [Pseudoalteromonas tunicata D2]
          Length = 178

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
           Q     FD  ++I   +   +LQ     L  +    + I GH D    R     N  L  
Sbjct: 72  QEQVIYFDFDTAIVSSQYADLLQAHANFLVVNPSVKVLIEGHADE---RGTPEYNIALGE 128

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
            R  +    L   GVS  ++S +S +   +  +   ++   + NRR
Sbjct: 129 RRGDAVVTYLQSLGVSASQLSVVS-YGEEKPMVKSRNEEAFAKNRR 173


>gi|284046858|ref|YP_003397198.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
 gi|283951079|gb|ADB53823.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
          Length = 615

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRL 287
           +D  +  +F   S    P  I +++ + E  L      + + G+TDA+     A  N  L
Sbjct: 500 VDLDSGALFAYDSVQLRPGAIELVEGLCERRLLEGAATLLVVGYTDAT---GPAAYNRVL 556

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           S  +A     VL+   V+  R   + G    R +      + A+ RI I+V  
Sbjct: 557 SRRQAARVRDVLLGEAVTRPRTVVVRGLGEARPR-----TDGADNRIRIVVRP 604


>gi|209168782|gb|ACI42382.1| major outer membrane protein [Aeromonas hydrophila]
          Length = 344

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 224 LFAFGKDSLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  + G         +
Sbjct: 281 RTVANFLVSKGMAASKV-AVEGRGEANPVTGT 311


>gi|167578122|ref|ZP_02370996.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           thailandensis TXDOH]
          Length = 267

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +  + L
Sbjct: 159 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTDTYNRQLSLARAEAIREYL 215

Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
              G+  + I     G A        D  ++        +RR+ I
Sbjct: 216 TTRGLPGNLIVAQGLGKADPVSNGCPDGYSAEAIACLAPDRRVRI 260


>gi|312127315|ref|YP_003992189.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777334|gb|ADQ06820.1| OmpA/MotB domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 241

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 28/184 (15%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISI------ 228
             S+     +K +++L +  KK    L  +V     IV+ ++ E   + + + I      
Sbjct: 38  SYSEILQAKIKEREKLTENLKKTEQKLESIVGIRKKIVEDLIKEFKNSKLSLKIDPQTGA 97

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEV-----ISIRGHTDASPFRN 279
           I    + +F+ +S          LQ+       +L           I I GHTD    R 
Sbjct: 98  ITFSESVLFEYNSYNLTQNGKKFLQQFIPKYIGILLSPQNKDNISQIIIEGHTDN---RG 154

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSE-------DRISKISGFAHHRLKIASDPMNS-AN 331
               N  LS  RA+   + ++ +   +        +    +G +  +L   +  ++  A+
Sbjct: 155 DYLYNLELSQKRAFEVVRYILSNQFPDFPQKQLLKKYITSNGRSFSQLIYKNGKVDQDAS 214

Query: 332 RRID 335
           RR++
Sbjct: 215 RRVE 218


>gi|218461533|ref|ZP_03501624.1| probable outer membrane lipoprotein [Rhizobium etli Kim 5]
          Length = 175

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L    + L  +   ++ ++G  D S   +  +    LS  RA
Sbjct: 65  RIYFKQDSAALDSVAMATLDSQADWLNKNPTWLLKLQGFADDSGSTSKMQT---LSQKRA 121

Query: 293 YSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPM-NSANRRI 334
            +A   L   GV   R+    G+     ++  +D      NRR+
Sbjct: 122 EAAMAYLASKGVDPKRMWA-KGYGNDREVRDCTDRSCKVQNRRV 164


>gi|30314412|gb|AAP15415.1| outer membrane lipoprotein precursor [Burkholderia vietnamiensis]
          Length = 150

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMETVSLGKEKPQATGHDETSWAQNRRADLV 147


>gi|221211146|ref|ZP_03584125.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD1]
 gi|221168507|gb|EEE00975.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD1]
          Length = 532

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      +        AH    +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSALPADAKAAIAAAADYANAHPDAKLTLSGFTDKT---GSADANAELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDRIILKKPETITGGADAKEA----------RRVEI 528


>gi|319795794|ref|YP_004157434.1| peptidoglycaN-associated lipoprotein [Variovorax paradoxus EPS]
 gi|315598257|gb|ADU39323.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus EPS]
          Length = 167

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+   +++     L   ST  + I GHTD+   R     N  L   R+ S 
Sbjct: 66  FDFDKYNIRPQDQRIVEAHASFLKNRSTSRVVIEGHTDS---RGGREYNLALGQRRSESV 122

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335
            + L + GV  +R+  IS G         ++     NRR +
Sbjct: 123 QRALTQLGVPAERVEAISWGIEKPASMETTEEGYQLNRRAE 163


>gi|304312902|ref|YP_003812500.1| Bacterial outer membrane protein, OmpA [gamma proteobacterium HdN1]
 gi|301798635|emb|CBL46867.1| Bacterial outer membrane protein, OmpA [gamma proteobacterium HdN1]
          Length = 169

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 7/125 (5%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDA 274
           +  TT TG   S I  +    FD   S    +   +LQ   + L+ H+   I I GH D 
Sbjct: 43  VTSTTDTGASTSSILSQRVVYFDFDKSAVRADAYEILQAHAQYLSSHAGARIRIEGHADE 102

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
              R     N  L   RA +    L  +G    ++  +S +           +   + NR
Sbjct: 103 ---RGTREYNMALGERRAKAVQSFLNANGAGAGQLEVVS-YGEENPIALGHDEASWAQNR 158

Query: 333 RIDIL 337
           R +++
Sbjct: 159 RSELV 163


>gi|259090547|gb|ACV91896.1| OprL [Pseudomonas fluorescens]
 gi|259090549|gb|ACV91897.1| OprL [Pseudomonas fluorescens]
 gi|259090551|gb|ACV91898.1| OprL [Pseudomonas fluorescens]
 gi|259090557|gb|ACV91901.1| OprL [Pseudomonas fluorescens]
 gi|259090559|gb|ACV91902.1| OprL [Pseudomonas fluorescens]
 gi|259090563|gb|ACV91904.1| OprL [Pseudomonas fluorescens]
 gi|259090565|gb|ACV91905.1| OprL [Pseudomonas fluorescens]
 gi|259090567|gb|ACV91906.1| OprL [Pseudomonas fluorescens]
 gi|259090569|gb|ACV91907.1| OprL [Pseudomonas fluorescens]
 gi|259090571|gb|ACV91908.1| OprL [Pseudomonas fluorescens]
 gi|259090585|gb|ACV91915.1| OprL [Pseudomonas fluorescens]
 gi|259090587|gb|ACV91916.1| OprL [Pseudomonas fluorescens]
          Length = 157

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TDA   R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDA---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GV+  ++  +S      +   +D
Sbjct: 124 RYLVLQGVAPGQLELVSYGKERPVATGND 152


>gi|198276407|ref|ZP_03208938.1| hypothetical protein BACPLE_02602 [Bacteroides plebeius DSM 17135]
 gi|198270849|gb|EDY95119.1| hypothetical protein BACPLE_02602 [Bacteroides plebeius DSM 17135]
          Length = 496

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  +S    P  +V L ++  V       + + G  D++       +   LS  RA  
Sbjct: 385 FFELGTSHLTDPSQLVNLDELARVAKKYGLKVKVTGAADSATGTVGINN--ALSASRADY 442

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIAS 324
               L K G+S DR++K    G + +    A+
Sbjct: 443 IASELNKRGLSPDRMTKTGEGGISDYAPTEAN 474


>gi|78065362|ref|YP_368131.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77966107|gb|ABB07487.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 170

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 125 RRAMALLGVNDSQMEAVSLGKEKPQAAGHDEASWAQNRRADLV 167


>gi|212704937|ref|ZP_03313065.1| hypothetical protein DESPIG_03004 [Desulfovibrio piger ATCC 29098]
 gi|212671601|gb|EEB32084.1| hypothetical protein DESPIG_03004 [Desulfovibrio piger ATCC 29098]
          Length = 155

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            I D     +F        P+   +L    E++       + I G+ D    R     N 
Sbjct: 44  QITD--GRVLFAFDKFDIQPQYKDMLTAKAELMKKYPSIRVRIEGNCDE---RGTQEYNL 98

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
            L   RA +AY  +++ GV+  ++  IS +   +  +     +  + NRR
Sbjct: 99  ALGERRARAAYDYMVRLGVNPGQLEMIS-YGKEKPVVQGSGESVWAQNRR 147


>gi|167909366|ref|ZP_02496457.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 112]
          Length = 525

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 429 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 485

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 486 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 521


>gi|254201767|ref|ZP_04908131.1| cytochrome c oxidase, subunit II [Burkholderia mallei FMH]
 gi|147747661|gb|EDK54737.1| cytochrome c oxidase, subunit II [Burkholderia mallei FMH]
          Length = 522

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 426 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 482

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 483 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 518


>gi|146280852|ref|YP_001171005.1| outer membrane protein [Pseudomonas stutzeri A1501]
 gi|145569057|gb|ABP78163.1| outer membrane protein [Pseudomonas stutzeri A1501]
          Length = 179

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 241 SSIPLPETIVVLQK--IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           S         +L    +         V+++ GHTD    R     N ++ + RA    ++
Sbjct: 82  SGELDAGAEQLLDSVLLAARRRDYP-VVTVIGHTDTLGHRAA---NEQVGMRRAQRMAEL 137

Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338
           L   G+    + ++       L +          NRR+++LV
Sbjct: 138 LRARGLEAMEL-RVESHGERNLLVATPDATAEPRNRRVEVLV 178


>gi|53718092|ref|YP_107078.1| putative cytochrome c oxidase [Burkholderia pseudomallei K96243]
 gi|53724516|ref|YP_104674.1| cytochrome c oxidase subunit II [Burkholderia mallei ATCC 23344]
 gi|76810581|ref|YP_332086.1| cytochrome c oxidase subunit II [Burkholderia pseudomallei 1710b]
 gi|126455009|ref|YP_001064790.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1106a]
 gi|226193702|ref|ZP_03789305.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810693|ref|YP_002895144.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei
           MSHR346]
 gi|242315097|ref|ZP_04814113.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1106b]
 gi|254259540|ref|ZP_04950594.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1710a]
 gi|52208506|emb|CAH34441.1| putative cytochrome c oxidase [Burkholderia pseudomallei K96243]
 gi|52427939|gb|AAU48532.1| cytochrome c oxidase, subunit II [Burkholderia mallei ATCC 23344]
 gi|76580034|gb|ABA49509.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1710b]
 gi|126228651|gb|ABN92191.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1106a]
 gi|225934280|gb|EEH30264.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505984|gb|ACQ98302.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei
           MSHR346]
 gi|242138336|gb|EES24738.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1106b]
 gi|254218229|gb|EET07613.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1710a]
          Length = 525

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 429 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 485

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 486 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 521


>gi|237859129|gb|ACR23740.1| outer membrane lipoprotein p6 [Avibacterium paragallinarum]
 gi|237859131|gb|ACR23741.1| outer membrane lipoprotein p6 [Avibacterium paragallinarum]
          Length = 150

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 216 LFETTRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTD 273
               T  G  +  +  + NT  F         E   +L      L  +    + + G+TD
Sbjct: 28  TVAQTFGGYSVQDLQQRYNTVYFGFDKYNIEGEYQQILDAHAAYLTATPASKVLVEGNTD 87

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSAN 331
               R     N  L   RA +    L   GV   ++S +S +   +      ++   + N
Sbjct: 88  E---RGTPEYNIALGQRRADAVANYLSAKGVQATQLSTVS-YGEEKPAELGHTEAAYAKN 143

Query: 332 RR 333
           RR
Sbjct: 144 RR 145


>gi|237859127|gb|ACR23739.1| outer membrane lipoprotein p6 [Avibacterium paragallinarum]
          Length = 150

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 216 LFETTRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTD 273
               T  G  +  +  + NT  F         E   +L      L  +    + + G+TD
Sbjct: 28  TVAQTFGGYSVQDLQQRYNTVYFGFDKYNIEGEYQQILDAHAAYLTATPASKVLVEGNTD 87

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSAN 331
               R     N  L   RA +    L   GV   ++S +S +   +      ++   + N
Sbjct: 88  E---RGTPEYNIALGQRRADAVANYLSAKGVQATQLSTVS-YGEEKPTELGHTEAAYAKN 143

Query: 332 RR 333
           RR
Sbjct: 144 RR 145


>gi|221199935|ref|ZP_03572978.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD2M]
 gi|221207396|ref|ZP_03580405.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD2]
 gi|221172599|gb|EEE05037.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD2]
 gi|221180174|gb|EEE12578.1| cytochrome c oxidase, subunit II [Burkholderia multivorans CGD2M]
          Length = 524

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      +        AH    +++ G TD +     A  N  L+  RA + 
Sbjct: 428 FETGKSALPADAKAAIAAAADYANAHPDAKLTLSGFTDKT---GSADANAELAKHRAQAV 484

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 485 RDALKAAGVAEDRIILKKPETITGGADAKEA----------RRVEI 520


>gi|110678301|ref|YP_681308.1| OmpA family domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109454417|gb|ABG30622.1| OmpA family domain protein [Roseobacter denitrificans OCh 114]
          Length = 319

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S   P     L+++ + L  S +  +++ GHTDA+        N  LS  RA S 
Sbjct: 214 FSVGTSDLGPGPFSALKELSDFLTRSQDMRVALVGHTDAT---GTLAANISLSRARARSV 270

Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342
              L++  GVS D++    G  +     ++  +     NRR+++++ + Q
Sbjct: 271 RSRLIETYGVSPDQVDA-EGMGYLAPIASNLTEEGRRLNRRVEVVLLNTQ 319


>gi|296410004|gb|ADH15778.1| OmpP6 [Haemophilus influenzae]
          Length = 141

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 36  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 92

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 93  ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 141


>gi|295688124|ref|YP_003591817.1| peptidoglycan-associated lipoprotein [Caulobacter segnis ATCC
           21756]
 gi|295430027|gb|ADG09199.1| peptidoglycan-associated lipoprotein [Caulobacter segnis ATCC
           21756]
          Length = 184

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD        +   VL    + L       + I G+ D    R     N  L   R
Sbjct: 75  DRVYFDTDEYSVRADGQPVLAGQAQWLNRYPSVKVRIEGNADE---RGTREYNLALGARR 131

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332
           A +    L+  GVS  RI  IS F   +   A       + NR
Sbjct: 132 ANAVRDFLIAQGVSASRIETIS-FGKEKPIDAGSTEEAWAKNR 173


>gi|167917395|ref|ZP_02504486.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei BCC215]
          Length = 517

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 421 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 477

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 478 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 513


>gi|121598969|ref|YP_991521.1| cytochrome c oxidase, subunit II [Burkholderia mallei SAVP1]
 gi|124385712|ref|YP_001027405.1| cytochrome c oxidase, subunit II [Burkholderia mallei NCTC 10229]
 gi|126450607|ref|YP_001082370.1| cytochrome c oxidase, subunit II [Burkholderia mallei NCTC 10247]
 gi|167717920|ref|ZP_02401156.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei DM98]
 gi|167736940|ref|ZP_02409714.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 14]
 gi|167822565|ref|ZP_02454036.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 9]
 gi|238563018|ref|ZP_00439522.2| cytochrome c oxidase, subunit II [Burkholderia mallei GB8 horse 4]
 gi|251767567|ref|ZP_02267750.2| cytochrome c oxidase, subunit II [Burkholderia mallei PRL-20]
 gi|254175026|ref|ZP_04881687.1| cytochrome c oxidase, subunit II [Burkholderia mallei ATCC 10399]
 gi|254181939|ref|ZP_04888536.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1655]
 gi|254207100|ref|ZP_04913451.1| cytochrome c oxidase, subunit II [Burkholderia mallei JHU]
 gi|254357584|ref|ZP_04973858.1| cytochrome c oxidase, subunit II [Burkholderia mallei 2002721280]
 gi|121227779|gb|ABM50297.1| cytochrome c oxidase, subunit II [Burkholderia mallei SAVP1]
 gi|124293732|gb|ABN03001.1| cytochrome c oxidase, subunit II [Burkholderia mallei NCTC 10229]
 gi|126243477|gb|ABO06570.1| cytochrome c oxidase, subunit II [Burkholderia mallei NCTC 10247]
 gi|147752642|gb|EDK59708.1| cytochrome c oxidase, subunit II [Burkholderia mallei JHU]
 gi|148026648|gb|EDK84733.1| cytochrome c oxidase, subunit II [Burkholderia mallei 2002721280]
 gi|160696071|gb|EDP86041.1| cytochrome c oxidase, subunit II [Burkholderia mallei ATCC 10399]
 gi|184212477|gb|EDU09520.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 1655]
 gi|238521497|gb|EEP84948.1| cytochrome c oxidase, subunit II [Burkholderia mallei GB8 horse 4]
 gi|243062286|gb|EES44472.1| cytochrome c oxidase, subunit II [Burkholderia mallei PRL-20]
          Length = 517

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 421 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 477

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 478 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 513


>gi|327405327|ref|YP_004346165.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320835|gb|AEA45327.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 752

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +     P+    L KI EV+      V+ +  HTD     + A  N +LS +RA ++
Sbjct: 625 FDLNKFTIRPDAAKELDKIVEVMNKYPYLVVELGAHTDCR--ASKAY-NMKLSDNRAKAS 681

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-----------SDPMNSANRRIDILV 338
            + + K   +  RI    G+   RL              S+  +  NRR +  V
Sbjct: 682 AEYIKKRITNPARIYG-KGYGESRLLNGCECEGTVKSDCSEEEHQKNRRTEFKV 734


>gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1]
 gi|300073404|gb|ADJ62803.1| OmpA protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F+  +    P +   L+K    +         + GH D         +N  LSL RA  
Sbjct: 88  LFELGTDRLTPASQDALKKAIAEIKDFPAGEFVLTGHADNI---GSETNNDALSLRRARL 144

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             + L ++ V    I  + G      ++          NR ++I +
Sbjct: 145 IERELRRADVKALSIE-VIGKGARDPRVPQKRGVAEPRNRFVEIKI 189


>gi|254187872|ref|ZP_04894384.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196504|ref|ZP_04902928.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei S13]
 gi|254296011|ref|ZP_04963468.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 406e]
 gi|157806128|gb|EDO83298.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 406e]
 gi|157935552|gb|EDO91222.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653247|gb|EDS85940.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei S13]
          Length = 492

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 396 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 452

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 453 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 488


>gi|253571969|ref|ZP_04849374.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|251838566|gb|EES66652.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
          Length = 363

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  +S+    +    L  + E L       ISI G+ D +          +LS  
Sbjct: 261 KQNIFFALNSAKIQDDQQAKLVSLIEYLETHPAAKISITGYADVNTGNPKINS--KLSEK 318

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA +  + L   G++ DRI KI          A+        R+ I +
Sbjct: 319 RAVNVAEALKVKGIAADRI-KIDFKGDTVQPYAT----PEENRVSICI 361


>gi|217419973|ref|ZP_03451479.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 576]
 gi|217397277|gb|EEC37293.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 576]
          Length = 517

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 421 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 477

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 478 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 513


>gi|167814044|ref|ZP_02445724.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 91]
 gi|167844146|ref|ZP_02469654.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei B7210]
 gi|167892651|ref|ZP_02480053.1| cytochrome c oxidase, subunit II [Burkholderia pseudomallei 7894]
          Length = 507

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 411 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQVV 467

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 468 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 503


>gi|159163741|pdb|2AIZ|P Chain P, Solution Structure Of Peptidoglycan Associated Lipoprotein
           From Haemophilus Influenza Bound To
           Udp-N-Acetylmuramoyl-L-
           Alanyl-D-Glutamyl-Meso-2,6-Diaminopimeloyl-D-Alanyl-D-
           Alanine
          Length = 134

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 24  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 80

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 81  ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 129


>gi|117617594|ref|YP_855822.1| major outer membrane protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559001|gb|ABK35949.1| major outer membrane protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 344

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 224 LFAFGKDSLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  + G         +
Sbjct: 281 RTVANFLVSKGMAASKV-AVEGRGEANPVTGT 311


>gi|56460187|ref|YP_155468.1| peptidoglycan-associated lipoprotein [Idiomarina loihiensis L2TR]
 gi|56179197|gb|AAV81919.1| Peptidoglycan-associated lipoprotein [Idiomarina loihiensis L2TR]
          Length = 178

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 33/178 (18%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
           + TD      +E N      S  ++ A  R +R+++  ++    L         + +++ 
Sbjct: 26  QETDSGMGAGQEINQQAEQDSGVEVGAADRAQRMEEERQQKMEALR-------KEHIVY- 77

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277
                             F    S    E   +L    + L  +    + I GHTD    
Sbjct: 78  ------------------FAFDKSNVQSEYTDLLSAHADYLVKNPSVKVVIEGHTDE--- 116

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV + + S +S +   +  +  +++   + NRR
Sbjct: 117 RGTPEYNIALGERRAKAVESYLHNLGVQDSQTSTVS-YGEEKPMVNGSNERAYAKNRR 173


>gi|78485827|ref|YP_391752.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78364113|gb|ABB42078.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2]
          Length = 187

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +   V++   + +A +   +++++G+ D    R     N  L   RA + 
Sbjct: 87  FEFDRSEVQSQFYDVIKMNADYMALNDSAMVTVKGYCDE---RGTREYNLALGERRANAV 143

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335
              L+  GVS  RI+ IS F          ++   + NRR +
Sbjct: 144 KNALVAEGVSPSRINVIS-FGEENPVDPAHNEAAWAKNRRAE 184


>gi|330825361|ref|YP_004388664.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|329310733|gb|AEB85148.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 234

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +S+   P     L+++   LA ++  I++ G TD++     A  N  L+  RA +  
Sbjct: 127 FPFASAQLGPSARAALREVAPRLAQAS-EITLSGRTDST---GPAATNDGLAKARAQAVL 182

Query: 297 QVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSANRRIDI 336
           + L+   +S    + +S    G   +     S    + NRR++I
Sbjct: 183 RQLLA--LSPAIAAHVSVDAQGTCCYAESNDSPAGRANNRRVEI 224


>gi|261251271|ref|ZP_05943845.1| hypothetical protein VIA_001290 [Vibrio orientalis CIP 102891]
 gi|260938144|gb|EEX94132.1| hypothetical protein VIA_001290 [Vibrio orientalis CIP 102891]
          Length = 188

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              P    VL++   ++ ++   I I GH D+         N  LS  RA    + L   
Sbjct: 94  KLSPNHKQVLEQYLGLVNNTA-KIYIEGHADSL---GGEGYNKALSARRAKQVAKYLKSD 149

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
               +RI +   +         +  ++   NRR+ I ++ 
Sbjct: 150 LKQGNRIVE-HAYGESSPICNLEQNSATGCNRRVVITIKS 188


>gi|218674466|ref|ZP_03524135.1| probable outer membrane lipoprotein [Rhizobium etli GR56]
          Length = 178

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L  +   ++ ++G  D S   +       LS  RA
Sbjct: 68  RIYFKQDSATLDSVAMATLDNQAAWLNRNPTWLLKLQGFADDSGSASQMET---LSQKRA 124

Query: 293 YSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPM-NSANRRI 334
            +A   L   GV   R+    G+     ++  +D      NRR+
Sbjct: 125 DAAMAYLASKGVDPKRMWA-KGYGNDREVRDCTDRSCKVQNRRV 167


>gi|313892856|ref|ZP_07826435.1| OmpA family protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442610|gb|EFR61023.1| OmpA family protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 341

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  NI      LS  R     Q L+ +GVS DR   I+     +    +      +
Sbjct: 277 TDANPQYNIG-----LSERRVQYVAQYLVNNGVSADRFIGIA-NGDTKPVATNSTAAGKA 330

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 331 ENRRVDVYIHR 341


>gi|297539675|ref|YP_003675444.1| peptidoglycan-associated lipoprotein [Methylotenera sp. 301]
 gi|297259022|gb|ADI30867.1| peptidoglycan-associated lipoprotein [Methylotenera sp. 301]
          Length = 191

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +++   + +LAH++  + ++G+TD    R     N  L   R+ + 
Sbjct: 88  FDFDSDAVKAEFRPLIEAHAKYLLAHTSAKVILQGNTDE---RGTREYNLSLGQRRSVAV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
            + L   GV + +I  +S F   +     A D  +  NRR+D++ E+
Sbjct: 145 KKSLNLLGVQDAQIETVS-FGEEKATEGCADDACSKQNRRVDVVYEN 190


>gi|167586272|ref|ZP_02378660.1| peptidoglycan-associated lipoprotein [Burkholderia ubonensis Bu]
          Length = 169

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRAMALLGVADSQMEAVSLGKEKPQAAGHDEASWAQNRRSDLV 166


>gi|62999040|gb|AAY25026.1| major outer membrane protein [Aeromonas hydrophila]
          Length = 344

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 224 LFAFGKDSLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  + G         +
Sbjct: 281 RTVANFLVSKGMAASKV-AVEGRGEANPVTGT 311


>gi|162146629|ref|YP_001601088.1| outer membrane lipoprotein omp16 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543379|ref|YP_002275608.1| peptidoglycan-associated lipoprotein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785204|emb|CAP54750.1| Outer membrane lipoprotein omp16 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531056|gb|ACI50993.1| peptidoglycan-associated lipoprotein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 158

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+ + +    +    L +    LA      I + G+ D    R     N  L   R
Sbjct: 53  DRVFFELNKNNLSSDAQATLDRQAAWLAKYPQVTIQVAGNCDD---RGTEEYNIALGERR 109

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  GV+  RI+ IS           D  + + NR
Sbjct: 110 ANAARDYLVAKGVAASRITTISYGKDRPTATGDDEQSWAQNR 151


>gi|160944675|ref|ZP_02091902.1| hypothetical protein FAEPRAM212_02189 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443859|gb|EDP20863.1| hypothetical protein FAEPRAM212_02189 [Faecalibacterium prausnitzii
           M21/2]
          Length = 246

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 25/187 (13%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           +  + ++E   L   S+   +   R   +  L+K+ S     +  D     + F++T   
Sbjct: 50  QAELEEKEQIILNQQSQIDTIVGVRGDLIDALSKEFSGNDLSVKVDAQSGAITFDST--- 106

Query: 224 ILISIIDQRNTPMFDKSS---SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280
               +    +  + D      +  LP+   VL  +G+  +     I I GHTD       
Sbjct: 107 ---LLFGYNDDKLQDSGKTFLAEFLPKYFSVL--LGKDFSPYVAEIIIEGHTDT---DGG 158

Query: 281 ARDNWRLSLDRAYSAY--------QVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NS 329
              N +LS +RA++            L  S + E R+    +G +      A+D      
Sbjct: 159 YMYNLQLSQNRAFAVVSYCLDENNHFLSDSQLEELRVLLTANGRSWSAPIYAADGTVDMQ 218

Query: 330 ANRRIDI 336
           A+RR++I
Sbjct: 219 ASRRVEI 225


>gi|282900459|ref|ZP_06308408.1| hypothetical protein CRC_01827 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194652|gb|EFA69600.1| hypothetical protein CRC_01827 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 207

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 42/153 (27%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQ-----KIGEVLAHST-EVISIRGHTDASPFR 278
           +I + +      FD   +   P+    ++     +I  +      +VI + GHTD  P  
Sbjct: 44  IIELYETSEYK-FDSGRAELKPDFKKYIRGELRPEILRITKEYPIDVIEVIGHTDGQPIS 102

Query: 279 NI------ARDNWRLSLD-----------------------RAYSAYQVLMKSGVSEDRI 309
            +         N   SL+                       RA +  Q L KSG    ++
Sbjct: 103 GVNSPTENNYSNLDYSLEKVNLGKLPVAQLRPGSNTDLGIMRALAVVQELKKSGGEIAKL 162

Query: 310 SKISGFAHHRLK---IASDPMNSAN---RRIDI 336
              +  A   L    + +D     N   RRI+I
Sbjct: 163 KFRTYSAGQLLLENGLPADIDKRGNSKRRRIEI 195


>gi|157375630|ref|YP_001474230.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318004|gb|ABV37102.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3]
          Length = 245

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 15/189 (7%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G  + KS   E  +  ++       SK   L+    + L  ++ +  S    L       
Sbjct: 61  GTIIGKSVGDESELYSQQAQLAMQESKMNQLS-DENRSLMAISNRYDSAQHELAQLKAED 119

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272
                    G+ +          F   SS  +P   + L ++   ++ S E  + + G+ 
Sbjct: 120 QQKLAELSLGLNVQ---------FKTGSSELVPHFKLQLDEVAYAMSLSPELRLDLTGYA 170

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSAN 331
           D    R  +  N  LS  R       L+  G+ E R+  +  G +    +  S   +  +
Sbjct: 171 DR---RGDSTYNQALSEQRVAEVKTYLVNQGIDESRLDFRAYGASAPMTEEQSFENDFFD 227

Query: 332 RRIDILVED 340
           RR+ + +  
Sbjct: 228 RRVTVKLLS 236


>gi|24217389|ref|NP_714872.1| outer membrane protein OmpA [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45655825|ref|YP_003634.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24202471|gb|AAN51887.1| OmpA-family protein [Leptospira interrogans serovar Lai str. 56601]
 gi|45602796|gb|AAS72271.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 383

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 17/209 (8%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
            +NS+   + K   +  S +  +  K    +   +K+E   +P  +   IL  +  K+L+
Sbjct: 190 KTNSEIVSNSKEKQSDVSIEKAESTKEVRKKNVRSKKEESEIPKNALT-ILKPQTGKKLE 248

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
                 SS  +    +       F    + + I          F+K+S     E+   L 
Sbjct: 249 S-KSLFSSLTNQNSTEEFSSNPQFREIESNV-IR---------FEKNSIQIHKESRPSLN 297

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
           ++   +   +   + + GHT           N ++SL RA +    +  +G+S+DR   I
Sbjct: 298 RLARWMKQDSSIRVKVIGHTS---LEGSEDANQKVSLLRAQTVRNYIAGNGISKDRFEII 354

Query: 313 SGFAHHRL-KIASDPMNSANRRIDILVED 340
              A   +   + +     NRR+++ + +
Sbjct: 355 PKGASVPIGDNSKEEGKEMNRRVELRIYN 383


>gi|149198155|ref|ZP_01875202.1| OmpA/MotB [Lentisphaera araneosa HTCC2155]
 gi|149138757|gb|EDM27163.1| OmpA/MotB [Lentisphaera araneosa HTCC2155]
          Length = 199

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+      +  L+ + + +A +    + I GHTD    +   + N  LS  RA + 
Sbjct: 94  FGFNSASIDKSNLRPLKILAKYIADNKDFHLVISGHTDE---KGSEQYNRILSEKRALAV 150

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR--IDILVEDR 341
            + L+     +++I  I G    +     D    ++ NRR   +I+   +
Sbjct: 151 REKLISFYDIKNKIHTI-GMGEEQPASLGDSIKDHAKNRRAQFEIIAVSK 199


>gi|297538999|ref|YP_003674768.1| peptidoglycan-associated lipoprotein [Methylotenera sp. 301]
 gi|297258346|gb|ADI30191.1| peptidoglycan-associated lipoprotein [Methylotenera sp. 301]
          Length = 180

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD    +  PE   +L+   + +L+H  + I I G+ D    R     N  L   RA + 
Sbjct: 77  FDFDKYVVKPEYRTLLEAHAKYLLSHPEKSIRIEGNADD---RGSREYNLALGQKRAVAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337
             +    GV + +I  IS +   + K     +   + NRR DI+
Sbjct: 134 KSLANLLGVPDKQIETIS-YGEEKPKATGEDETSWAENRRADIV 176


>gi|295836759|ref|ZP_06823692.1| secreted protein [Streptomyces sp. SPB74]
 gi|295826190|gb|EFG64725.1| secreted protein [Streptomyces sp. SPB74]
          Length = 204

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 11/185 (5%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
                  D   ++        PP   +      R      LA      +  +V D +   
Sbjct: 22  PGGVAGADDGPTVPPGSVTTSPPPDVDASSPGLRLADGARLAPAKVLDIKSVVED-LGGE 80

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTD 273
              E T T + I++   +   +FDK      P     ++ I  E        + + G TD
Sbjct: 81  ERREDTNTDVKIAL---QAEVLFDKDKFALDPSGRSRIEAIADEAKKQRARTVRVFGFTD 137

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331
                        LS  RA   +  L    +  +   ++ G++       +  +     N
Sbjct: 138 NL---GSYAHGKTLSKRRADIVHDELAPH-LGPEVTFEVRGYSEDYPIADNTTEEGRRKN 193

Query: 332 RRIDI 336
           RR++I
Sbjct: 194 RRVEI 198


>gi|288803192|ref|ZP_06408626.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|288334233|gb|EFC72674.1| conserved hypothetical protein [Prevotella melaninogenica D18]
          Length = 387

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           GK   K +   ++IN +    L  L+     A +   RL+               + +  
Sbjct: 223 GKGTWKKSPDMEAINTQHQAALDALNARLQDAEEENARLR---------------NELAN 267

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHT 272
               ET    +   ++    +  F+ + S    +  +V +Q + +    +   + + G+ 
Sbjct: 268 QKPVETVSESVK-QLVTTPVSVFFEINQSTIASQKDLVNVQALAKYAKDNNNNLLVTGYA 326

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           D++     A  N +LS  RA      L+K G+  ++I+ + G              S NR
Sbjct: 327 DSA--TGSADYNQKLSERRATVVANELVKMGIENNKITTV-GKGGVETLSPI----SFNR 379

Query: 333 R 333
           R
Sbjct: 380 R 380


>gi|219870352|ref|YP_002474727.1| 18K peptidoglycan-associated outer membrane lipoprotein PalA
           [Haemophilus parasuis SH0165]
 gi|219690556|gb|ACL31779.1| 18K peptidoglycan-associated outer membrane lipoprotein, precursor
           PalA [Haemophilus parasuis SH0165]
          Length = 153

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T  G+ +  +  + NT  FD  S     E   +L    + L  S   +++ GH D    R
Sbjct: 38  TFGGMSVQDLQTRYNTVYFDFDSYTLKAEDQQLLDAHAQYLVASKGKVTVAGHADE---R 94

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
                N  L   RA +    L   G     ++ +S +   +  +   S+   S NRR
Sbjct: 95  GTPEYNIALGQRRADAVKDFLATKG--ASNVATVS-YGEEKPAVLGHSEADYSKNRR 148


>gi|299773233|gb|ADJ38691.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 368

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 245 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 300

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           A +    ++  GV+   ++ + G+        +
Sbjct: 301 AETVANYIVSKGVNPANVTAV-GYGEANPVTGN 332


>gi|299773231|gb|ADJ38690.1| outer membrane protein P5 [Haemophilus parasuis]
          Length = 370

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   +   P     L          L  +   + + G+TD          N  LS  R
Sbjct: 247 LFDFGKANLKPAAAQTLDA-AHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKR 302

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           A +    ++  GV+   ++ + G+        +
Sbjct: 303 AETVANYIVSKGVNPANVTAV-GYGEANPVTGN 334


>gi|262173379|ref|ZP_06041056.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           mimicus MB-451]
 gi|261890737|gb|EEY36724.1| putative sodium-type flagellar protein MotY precursor [Vibrio
           mimicus MB-451]
          Length = 345

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRL 287
           D+     F         E  + L+ +   +        + + G+TD       +  N  +
Sbjct: 213 DREVVIYFAFGQRTLSNEQKMRLRALYRYIVEDSRVNKVLVDGYTDNV---GPSVANLTI 269

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           S  R+    + L + G++E+++  +          ++D     + NRR+ +
Sbjct: 270 SRQRSELIAKELNRLGLAEEKVE-VRAHGLRYPVASNDTAAGQAKNRRVTL 319


>gi|311745704|ref|ZP_07719489.1| putative OmpA family protein [Algoriphagus sp. PR1]
 gi|126575146|gb|EAZ79496.1| putative OmpA family protein [Algoriphagus sp. PR1]
          Length = 430

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           SS PL  +      +   L  +  V + I+G+ D          N +LS  RA + Y +L
Sbjct: 334 SSKPLAYSASAADYVANFLKKNPGVSVEIKGYADEL---GSEDYNIQLSEKRAKAVYDLL 390

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSAN--RRIDILVE 339
           + +G+   R+    G+        S   ++    RR+   V+
Sbjct: 391 IATGIDASRL-SFKGYGEDTSVDKS-SADARQMARRVSFEVK 430


>gi|89900668|ref|YP_523139.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89345405|gb|ABD69608.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 387

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD   +   P     L K+   L ++  +VI + GHTD     + A  N +LS  RA 
Sbjct: 270 SLFDFDKASLKPTGQQDLDKLAAELKNTQFDVIKVTGHTD--RIGSHAY-NQKLSERRAE 326

Query: 294 SAYQVLMKS-GVSEDRI 309
           +    LM S G++ D+I
Sbjct: 327 AVKGYLMTSIGIAGDKI 343


>gi|7327635|gb|AAF45029.2|AF146597_1 putative outer membrane protein [Aeromonas hydrophila]
          Length = 344

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 224 LFAFGKDSLKPEGVAALNALYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338
            +    L+  G++  ++  I G         +  D + +          +RR+++ V
Sbjct: 281 RTVANFLVSKGMAASKV-AIEGRGEANPVTGTKCDGVKAKAQLISCLAPDRRVEVRV 336


>gi|242310688|ref|ZP_04809843.1| lipoprotein [Helicobacter pullorum MIT 98-5489]
 gi|239523086|gb|EEQ62952.1| lipoprotein [Helicobacter pullorum MIT 98-5489]
          Length = 172

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 225 LISIIDQR-NTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNI 280
            I  ++       F+       P+    +     VL  +      + I G+TD       
Sbjct: 55  RIQYVENGLQNIFFNFDQFSIRPDMQNAVDNDANVLKDTAANPLTVRIEGNTDEW---GT 111

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338
              N+ L L RA +    L+  GVSE ++  +S +   +      +    + NR++   +
Sbjct: 112 DEYNYALGLKRAVAVKDALVARGVSEGKMVLVS-YGESKPTCMEKTRECWAENRKVTFKM 170

Query: 339 ED 340
             
Sbjct: 171 LP 172


>gi|167579701|ref|ZP_02372575.1| cytochrome c oxidase, subunit II [Burkholderia thailandensis TXDOH]
          Length = 507

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 411 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELAKRRAQIV 467

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 468 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 503


>gi|940548|emb|CAA81039.1| Outer membrane or porin protein [Leptothrix discophora]
          Length = 84

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           VI   GHTD+         N +LS+ RA +  + L+  G+ ++R+         +    +
Sbjct: 5   VIIAVGHTDSD---GSDALNDKLSVSRAEAVKKYLVSKGIEQNRVY-TEAKGEKQPVADN 60

Query: 325 DPMN--SANRRIDI 336
                   NRR++I
Sbjct: 61  STKEGKQKNRRVEI 74


>gi|238028705|ref|YP_002912936.1| cytochrome c oxidase subunit II [Burkholderia glumae BGR1]
 gi|237877899|gb|ACR30232.1| Cytochrome c oxidase, subunit II [Burkholderia glumae BGR1]
          Length = 555

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +    L       +   +  +++ G TD +     A  N  L+  RA + 
Sbjct: 459 FDTGKSELPADAKAALDAAARYASAHPDAKLALSGFTDTT---GSADANAELAKRRAQAV 515

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++EDRI       I+G A               RR++I
Sbjct: 516 RDALKAAGIAEDRIVLKKPQTITGGAD----------AGQARRVEI 551


>gi|309244385|gb|ADO52197.1| OprL [Pseudomonas sp. AF32]
          Length = 156

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150


>gi|171321509|ref|ZP_02910450.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria MEX-5]
 gi|171093217|gb|EDT38424.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria MEX-5]
          Length = 169

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRAMALLGVNDSQMEAVSLGKEKPQASGHDEASWAQNRRADLV 166


>gi|319903022|ref|YP_004162750.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
 gi|319418053|gb|ADV45164.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108]
          Length = 411

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           K++  ++    P    E I+  ++    Q++ K   S +S     + +K  + + T    
Sbjct: 248 KTVKHKKATIAPMQQTESIVEYEKPSTEQNIVK--DSVISEHPMKDEIKVTVTDPTERTS 305

Query: 225 LISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281
            I        P+  F  +S    P     L +I  +L  + +  I+I G  D    +   
Sbjct: 306 SI------KFPIISFSFNSVWIEPSQRTKLHEIKLLLEKNPQTTITISGWCDN---KGSE 356

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
             N R+S  RA +    L++ G+S +RI
Sbjct: 357 DVNKRISAKRADAVKLWLVRRGISTERI 384


>gi|322515689|ref|ZP_08068662.1| OmpA protein [Actinobacillus ureae ATCC 25976]
 gi|322118234|gb|EFX90526.1| OmpA protein [Actinobacillus ureae ATCC 25976]
          Length = 383

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 236 MFDKSSSIPLPETIVVL----QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 263 LFDFGKSSLNPAAATALDAANTEIAN-LGLATLAIQVNGYTDRI---GKEASNLKLSQRR 318

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVED 340
           A +    L+  G +   ++ + G+        +  D +            +RR+++ V+ 
Sbjct: 319 AETVANYLVSKGQNAANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQG 377

Query: 341 RQ 342
            +
Sbjct: 378 SK 379


>gi|227824065|ref|YP_002828038.1| putative outer membrane protein, OmpA/MotB domain protein
           [Sinorhizobium fredii NGR234]
 gi|227343067|gb|ACP27285.1| putative outer membrane protein, OmpA/MotB domain protein
           [Sinorhizobium fredii NGR234]
          Length = 189

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+         L K    L  +   ++ ++G  D S   +       LS  RA
Sbjct: 79  RTYFTQDSATLDAVAKATLDKQATWLNSNQRWLVKLQGFADDSGSASKMAT---LSQQRA 135

Query: 293 YSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPM-NSANRRI 334
            +A   L+  GV  +R+    G+     ++  +D      NRR+
Sbjct: 136 DAAMAYLVSKGVDPNRLWA-KGYGNDREVRDCTDRSCKVQNRRV 178


>gi|153953154|ref|YP_001393919.1| hypothetical protein CKL_0517 [Clostridium kluyveri DSM 555]
 gi|146346035|gb|EDK32571.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 245

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 35/175 (20%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSS 241
           ++K+L++L  ++   +   V  +I++ +       G+ I+I      I   +  +F+ + 
Sbjct: 57  QQKQLKNLRLQVEKVIG--VRQSIIEDIRKSFQNAGLDINIDKNTGDIVFSSDVLFEFNK 114

Query: 242 SIPLPETIVVLQKIGE----VLAH-----STEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +   PE    L K       VL       S   I I GHTD          N  LS  RA
Sbjct: 115 ADIRPEFKSNLDKFIPQYVNVLTSPKYISSVSEIVIEGHTDNI---GDYNYNMDLSQKRA 171

Query: 293 YSAYQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNSAN----RRI 334
            S    ++ +               I   +G +  +L   SD   S N    RR+
Sbjct: 172 NSIVNYILNNNFKNLDSYSKENLKNIITANGRSKSQLIKNSD--GSVNQEKSRRV 224


>gi|115350730|ref|YP_772569.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115280718|gb|ABI86235.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD]
          Length = 169

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRAMALLGVNDSQMEAVSLGKEKPQASGHDEASWAQNRRADLV 166


>gi|290474098|ref|YP_003466974.1| outer membrane integrity protein [Xenorhabdus bovienii SS-2004]
 gi|289173407|emb|CBJ80184.1| required for outer membrane integrity, uptake of group A colicins,
           and translocation of phage DNA [Xenorhabdus bovienii
           SS-2004]
          Length = 167

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +S  +GL A+ + +  + E          +   N   F         +   +L      L
Sbjct: 40  NSAKAGLSAEELARQQMQE----------LQNNNIVYFGFDKYDINSDFAQMLDAHAVFL 89

Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH 317
             +    ++I GH D    R     N  L   RA +    L   GVS D+++ +S G   
Sbjct: 90  RSNPSIKVTIEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQLAIVSYGKEK 146

Query: 318 HRLKIASDPMNSANRRIDIL 337
             +    +   S NRR  I+
Sbjct: 147 PAVLGHDEAAYSKNRRAVIV 166


>gi|86147194|ref|ZP_01065510.1| outer membrane protein [Vibrio sp. MED222]
 gi|85835078|gb|EAQ53220.1| outer membrane protein [Vibrio sp. MED222]
          Length = 213

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD        ++  +L  +   L H T    + G+TD+   +     N  L L R+    
Sbjct: 114 FDFDDDELNQKSRYLLLNLIAKLEHQTPEFIVTGNTDS---KGSDSYNLSLGLQRSNVVV 170

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             L + GV+ + ++ +S         +++  +    NRR+DI
Sbjct: 171 GYLKEQGVNIEDLT-VSSQGEANPVQSNETESGRHNNRRVDI 211


>gi|149920362|ref|ZP_01908832.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149818804|gb|EDM78246.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 225

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGH-----TDASPFRNIARDNWRLSLDR-AY 293
            +    +++ +L+ +  VL    E  + I+ H      D   + +           R A 
Sbjct: 108 KATLARDSLPLLESVAAVLVAYPELELEIQAHEDTVTADQHRYMSARP------TQRQAE 161

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
           +    L++ GV+ +RI +  G+   R    ++       NRR+D++
Sbjct: 162 AVADFLIQKGVAAERI-QARGYGEDRPIDTNETKEGRRHNRRVDLV 206


>gi|56479209|ref|YP_160798.1| lipoprotein [Aromatoleum aromaticum EbN1]
 gi|56315252|emb|CAI09897.1| hypothetical protein, possible lipoprotein [Aromatoleum aromaticum
           EbN1]
          Length = 226

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S+         L    + L      I+I G TD++        N  L+L RA +  
Sbjct: 119 FALGSAKLSRAARSQLNAAMDDLLQV-RRITIIGRTDST---GPLAFNQDLALARALAVR 174

Query: 297 QVLMKS--GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             L ++   ++     +  G         +    + NRR++++
Sbjct: 175 DHLRRTHPALAATLTLRARGACCFIAPNDTLAGRAQNRRVEVV 217


>gi|238756015|ref|ZP_04617339.1| Peptidoglycan-associated lipoprotein [Yersinia ruckeri ATCC 29473]
 gi|238705740|gb|EEP98133.1| Peptidoglycan-associated lipoprotein [Yersinia ruckeri ATCC 29473]
          Length = 167

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         +   +L      L  +    + + GH D    R    
Sbjct: 54  LQMQELQKNNIVYFGFDKYDIASDFAQMLDAHAAFLRSNPSYKVVVEGHADE---RGTPE 110

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   RA +    L   GVS D+IS +S G     +    +   + NRR
Sbjct: 111 YNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRR 162


>gi|145308172|gb|ABP57358.1| hypothetical protein bst103 [Bacteroides uniformis]
          Length = 321

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V       + + G  D+S   +   D+  LS  RA  
Sbjct: 243 FFTLNTARLTDVSQKLNLDELARVAKKYDLHVRVTGAADSSTGTSGINDS--LSQSRADF 300

Query: 295 AYQVLMKSGVSEDRISKIS 313
               L + G+  +RI+KIS
Sbjct: 301 IVSELKQRGIPAERITKIS 319


>gi|298482722|ref|ZP_07000906.1| outer membrane protein [Bacteroides sp. D22]
 gi|298271185|gb|EFI12762.1| outer membrane protein [Bacteroides sp. D22]
          Length = 485

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     + ++ L  +  V       + I G  D+S       D+  LS  RA  
Sbjct: 379 FFSLNTARLTDASQMLNLDGLARVAKKYNLSVKITGAADSSTGTPAINDS--LSTARAEF 436

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR--RIDIL 337
               L + GV    + K+   G A+H           ANR  R+++ 
Sbjct: 437 VAVELERRGVPTGMVIKVGIGGIANHIP-------TEANRHTRVELF 476


>gi|153875989|ref|ZP_02003535.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152067548|gb|EDN66466.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 58

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340
            RA +    L+  G++ +R+    GF   +     A++     NRR++I++ +
Sbjct: 2   RRAKTVRNYLINRGINSERLIA-KGFGEKQPIATNATNAGRQQNRRVEIIILN 53


>gi|296410006|gb|ADH15779.1| OmpP6 [Haemophilus influenzae]
          Length = 145

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 38  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 94

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 95  ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 143


>gi|126729352|ref|ZP_01745166.1| OmpA/MotB [Sagittula stellata E-37]
 gi|126710342|gb|EBA09394.1| OmpA/MotB [Sagittula stellata E-37]
          Length = 155

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F + +S+   E   +   +   L    + + I GHT  +     A  N  LS  RA  A 
Sbjct: 49  FSRGTSLANGEEERLRGVLASALPDDRKHVVIVGHTGTT---GDADANLELSEKRAQVAA 105

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR--RIDILVEDRQ 342
           Q+    G+ +DR++ ++G          D  +     +R  R+D+ V+ R+
Sbjct: 106 QIARAMGLPDDRLT-VTGIGGSAPLPQDDGESDRAHQSRMARVDVTVQVRR 155


>gi|309244377|gb|ADO52193.1| OprL [Pseudomonas cichorii]
          Length = 156

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEALRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNIALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + L+  GVS  ++  +S +   R     +
Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150


>gi|209517619|ref|ZP_03266457.1| peptidoglycan-associated lipoprotein [Burkholderia sp. H160]
 gi|209501915|gb|EEA01933.1| peptidoglycan-associated lipoprotein [Burkholderia sp. H160]
          Length = 168

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 66  FDFDSYSVKDDYQTLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            + L   GV++ ++  +S     +           + NRR D++
Sbjct: 123 RRSLALMGVTDSQMEAVS-LGKEKPLATGHDEASWAQNRRADLV 165


>gi|224371662|ref|YP_002605826.1| hypothetical outer membrane protein [Desulfobacterium autotrophicum
            HRM2]
 gi|223694379|gb|ACN17662.1| hypothetical outer membrane protein [Desulfobacterium autotrophicum
            HRM2]
          Length = 1306

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 88/298 (29%), Gaps = 40/298 (13%)

Query: 70   NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            NP      +  K +   QN       +K D  +        +  ++G  + K        
Sbjct: 843  NPVSFPDPSLGKALDAIQNGNIFRDMSKSDQLVSVLGDLTQLSGRLGEASSKLTGDAATE 902

Query: 130  NIFYLSNSQQ--SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             +   + +        K  L    +  K          S       F   L K     + 
Sbjct: 903  ALKSATQTAALVESLSKALLNSIPQDLKSASAKPPATASEKGAAANFFKDLIKSGNAPVS 962

Query: 188  RKKRLQDLAKKISSTLSGLVADNIVKGVLFE---------------------------TT 220
             ++ L+  A+ +   LSG    N V                                   
Sbjct: 963  ERELLESAARALGVPLSGDPLANPVTFAGTSGDFFPPSPGLGGFSPDGFSINDFLAGGDV 1022

Query: 221  RTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
            R G++    DQ N         FD + S    +  + L  + +++  +   I I      
Sbjct: 1023 REGLI--FPDQSNRVDKILLSNFDINQSDLTEDHKMALDLLAKIM-DNDLDIRILAFEGR 1079

Query: 275  SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
            +       +N  LS +RA +    L   GVS++R+  ++G+        S+  N  NR
Sbjct: 1080 ASSTGDDENNITLSHNRAKTVKDYLSVKGVSDERLGLVNGYGS--ALSLSNTPNQENR 1135


>gi|163854962|ref|YP_001629260.1| peptidoglycan-associated lipoprotein [Bordetella petrii DSM 12804]
 gi|163258690|emb|CAP40989.1| peptidoglycan-associated lipoprotein [Bordetella petrii]
          Length = 167

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285
           S++ Q+ +  FD  S     +   +++     LA H  + + I+G+TD    R  A  N 
Sbjct: 55  SVLAQQRSVYFDFDSYTVPDQYRGLVETHARYLASHQQQRVQIQGNTDE---RGGAEYNL 111

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            L   RA +  +++   GVS+ +I  IS G    R    ++   + NRR DI
Sbjct: 112 ALGQRRADAVRRMMTLLGVSDAQIETISFGKEKPRATGTTEADFAENRRADI 163


>gi|217973615|ref|YP_002358366.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223]
 gi|217498750|gb|ACK46943.1| OmpA/MotB domain protein [Shewanella baltica OS223]
          Length = 276

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              ++A   + ++    +R+  N +D S      + + + +            L   +  
Sbjct: 19  VASVSARVSLPNQAQGQDRTLNNDVDASGMAMDGEYANEDEQPEALIGLGGGALVGALVG 78

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                       +L   S    D       + S+ + +   L  LS ++  A KR     
Sbjct: 79  GPVGAIIGAFTGTLIGKSVSDTDTLHVQQRQISLQESQ---LSELSVKQQAAEKRASEYA 135

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              +++   LS        +  L      G+ +          F   SS      +  L 
Sbjct: 136 KAQQELDELLS-------AQRQLLSELALGLNVQ---------FRTGSSEVESHFLPQLD 179

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + EV+  S E  + ++G+ D    R     N  LS  R       L+K GV+ +R++  
Sbjct: 180 DVAEVMNLSPELNLELKGYADR---RGDVSYNQALSEQRLLEVRGYLIKQGVAAERMTTQ 236

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDILVED 340
           +  A   L+   D  +   +RR+ + ++ 
Sbjct: 237 AFGALSPLQAEQDRESDVFDRRVTLTLQP 265


>gi|238020123|ref|ZP_04600549.1| hypothetical protein VEIDISOL_02007 [Veillonella dispar ATCC 17748]
 gi|237863647|gb|EEP64937.1| hypothetical protein VEIDISOL_02007 [Veillonella dispar ATCC 17748]
          Length = 366

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  N+      LS  R     Q L+ +GVS DR   I+     +    +      +
Sbjct: 302 TDATPQYNVG-----LSERRVQYVAQYLVNNGVSADRFIGIA-NGDTKPVATNSTAAGKA 355

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 356 ENRRVDVYIHR 366


>gi|213420068|ref|ZP_03353134.1| hypothetical protein Salmonentericaenterica_20830 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 64

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
            + L   GV   R+  I G         +      + NRR++ILV +
Sbjct: 19  RRCLTSGGVPAGRVH-IVGKGDTVPVADNGSKAGRAKNRRVEILVVE 64


>gi|262197769|ref|YP_003268978.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
 gi|262081116|gb|ACY17085.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365]
          Length = 333

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 76/256 (29%), Gaps = 13/256 (5%)

Query: 83  IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142
           + D    P           +    +  +   ++     + Q QR  + +    ++     
Sbjct: 88  VADPDKVPRARQNFPKSRVVTRTGSSEANVREVERVLARNQPQRDRDVVVARRSTPTQPT 147

Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202
            K      + +          E+          P  ++ +    +   R+  L +     
Sbjct: 148 RKAEEPTGTRRIAQTPTERRTEEPTRTPTPTPTPTPTEVEPEPTREPTRVATLPRAERED 207

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
                     +       +      +        F  +S         +L +    L  +
Sbjct: 208 EVERTTPRRTEKPRQRNAK------VPSFTKELYFGSNSVRLSARNRRLLMRNVRWLEAN 261

Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            E  ++I GHTDA      A  N  L   RA S    L++ GV   RI  +S      LK
Sbjct: 262 PEASLTIEGHTDA---SGPAEYNLILGERRAESVQSFLIEQGVDSGRIDVVS-RGEDDLK 317

Query: 322 IASDPMNSANRRIDIL 337
             S   ++ NRR+ ++
Sbjct: 318 YKS--GSAKNRRVMLI 331


>gi|254246221|ref|ZP_04939542.1| OmpA/MotB [Burkholderia cenocepacia PC184]
 gi|124870997|gb|EAY62713.1| OmpA/MotB [Burkholderia cenocepacia PC184]
          Length = 183

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 81  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 137

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 138 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 180


>gi|45659158|ref|YP_003244.1| hypothetical protein LIC13339 [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|45602404|gb|AAS71881.1| MotB [Leptospira interrogans serovar Copenhageni str. Fiocruz
          L1-130]
          Length = 242

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          +++K    +++  N   W + YAD +T+L+  F++M+ I+  D    K +  
Sbjct: 8  LLEKGHRKEESHENRERWLLTYADMITLLLGLFIIMYSISQVDQTKLKQVAD 59


>gi|107021874|ref|YP_620201.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116688822|ref|YP_834445.1| OmpA-like protein [Burkholderia cenocepacia HI2424]
 gi|170732121|ref|YP_001764068.1| peptidoglycan-associated lipoprotein [Burkholderia cenocepacia
           MC0-3]
 gi|206561548|ref|YP_002232313.1| putative OmpA family lipoprotein [Burkholderia cenocepacia J2315]
 gi|105892063|gb|ABF75228.1| OmpA/MotB [Burkholderia cenocepacia AU 1054]
 gi|116646911|gb|ABK07552.1| OmpA-like protein [Burkholderia cenocepacia HI2424]
 gi|169815363|gb|ACA89946.1| peptidoglycan-associated lipoprotein [Burkholderia cenocepacia
           MC0-3]
 gi|198037590|emb|CAR53528.1| putative OmpA family lipoprotein [Burkholderia cenocepacia J2315]
          Length = 170

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 125 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 167


>gi|322379707|ref|ZP_08054020.1| peptidoglycan-associated lipoprotein precursor [Helicobacter suis
           HS5]
 gi|321147856|gb|EFX42443.1| peptidoglycan-associated lipoprotein precursor [Helicobacter suis
           HS5]
          Length = 181

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
               F         +   V+ +  + +  S   + + G+TD   F +    N+ L+  RA
Sbjct: 75  GQVYFSFDKYDIRADMESVIDQAAQKIKESQMKVLLEGNTDE--FGSGEY-NFALANKRA 131

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVED 340
            S  Q L+  G+++D I ++      +   +  +      NRR+DI V +
Sbjct: 132 LSVKQALIIKGIAQDTI-RVVSLGETKPSCQEKNKTCYRKNRRVDIKVVE 180


>gi|46201524|ref|ZP_00054848.2| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 114

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L  + E L  ++ + +I  GH D    R     N  L   RA + 
Sbjct: 11  FDSDRLDLNAKAKAILDGVAEELKRNSTLTAILAGHADD---RGSREYNLALGERRAEAV 67

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
              L   G   +R++ IS G    R    +    +ANRR+ + +E
Sbjct: 68  KTYLAVHGAPVERMAAISYGKEQPRDTSGTKAARAANRRVVVRLE 112


>gi|329888410|ref|ZP_08267008.1| peptidoglycan-associated lipoprotein [Brevundimonas diminuta ATCC
           11568]
 gi|328846966|gb|EGF96528.1| peptidoglycan-associated lipoprotein [Brevundimonas diminuta ATCC
           11568]
          Length = 184

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S     E    L      LA      + I G+ D    R     N  L   R
Sbjct: 74  DRVYFDLDSYSVRAEAQPRLDAQAAWLARYPQVTVRIEGNADE---RGTREYNLALGARR 130

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR--RIDIL 337
           A +    L+  GV   RI  IS F   R     +++   + NR  R  I+
Sbjct: 131 AEAVRSYLISRGVPAARIDTIS-FGKERPIAEGSNESAWAQNRNARTAIV 179


>gi|187922763|ref|YP_001894405.1| peptidoglycan-associated lipoprotein [Burkholderia phytofirmans
           PsJN]
 gi|187713957|gb|ACD15181.1| peptidoglycan-associated lipoprotein [Burkholderia phytofirmans
           PsJN]
          Length = 169

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDDYQSLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRSLSLMGVTDSQMEAVSLGKEKPQATGHDESSWAQNRRADLV 166


>gi|32034275|ref|ZP_00134486.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209314|ref|YP_001054539.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae L20]
 gi|126098106|gb|ABN74934.1| Outer membrane protein P5 precursor (OMP P5) [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 364

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L  +   + ++      I + G+TD          N +LS  RA
Sbjct: 244 LFAFGKSNLKPAAATALDAMQTEINNAGLSNAAIQVNGYTDRI---GKEASNLKLSQRRA 300

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
            +    ++  G     ++ + G+        +               + +RR+++ V+
Sbjct: 301 ETVANYIVSKGALAANVTAV-GYGEANPVTGATCDKVKGRKALIACLAPDRRVEVQVQ 357


>gi|194335385|ref|YP_002017179.1| peptidoglycan-associated lipoprotein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307862|gb|ACF42562.1| peptidoglycan-associated lipoprotein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 154

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 226 ISIIDQRNTPMF-DKSSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTDASPFRNIA 281
           I II      +F D   S    + +  L+      +V  +    + I GH D    R   
Sbjct: 41  IQIILPGLGDLFYDFDKSDLRADAVEQLKTNANWMQVFKN--NSVIIEGHCDE---RGTN 95

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
             N  L   RA SA    +  G+   R+  +S +   +     +++   + NRR
Sbjct: 96  EYNLALGERRANSARNYTINLGIDPVRLKTVS-YGEEKPFATGSTEEAWAQNRR 148


>gi|170701074|ref|ZP_02892051.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria
           IOP40-10]
 gi|172059753|ref|YP_001807405.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria
           MC40-6]
 gi|170134014|gb|EDT02365.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria
           IOP40-10]
 gi|171992270|gb|ACB63189.1| peptidoglycan-associated lipoprotein [Burkholderia ambifaria
           MC40-6]
          Length = 169

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRAMALLGVNDSQMEAVSLGKEKPQASGHDEASWAQNRRADLV 166


>gi|117619103|ref|YP_858241.1| outer membrane protein A [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560510|gb|ABK37458.1| outer membrane protein P5 [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 352

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + +   P     L  +   +  +     V ++ G+TD     + A  N +LS  RA
Sbjct: 233 LFDFNKATLKPAAGQALDNLYSQIEQARPKDGVATVIGYTD--RIGSDAY-NQKLSEQRA 289

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN----------SANRRIDILVE 339
            +    L+  G+   +++ + G             +          + +RR+++ VE
Sbjct: 290 RTVADYLVGKGLPAGKVN-VEGRGKGNPVTGDSCTSKSKKELIVCLAPDRRVEVKVE 345


>gi|238785870|ref|ZP_04629838.1| Peptidoglycan-associated lipoprotein [Yersinia bercovieri ATCC
           43970]
 gi|238713240|gb|EEQ05284.1| Peptidoglycan-associated lipoprotein [Yersinia bercovieri ATCC
           43970]
          Length = 168

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|218708117|ref|YP_002415738.1| putative outer membrane protein [Vibrio splendidus LGP32]
 gi|218321136|emb|CAV17086.1| putative outer membrane protein, ompA/motB [Vibrio splendidus
           LGP32]
          Length = 213

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD        ++  +L K+   L H T    + G+TD+   +     N  L L R+ +  
Sbjct: 114 FDFDDDELNQKSRYLLLKLIAKLEHQTPEFIVTGNTDS---KGSDSYNLSLGLQRSNAVV 170

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
             L + GV+ + ++ +S         +++  +    NRR+D
Sbjct: 171 GYLKEQGVNIEDLT-VSSQGEANPVQSNETESGRHNNRRVD 210


>gi|123443145|ref|YP_001007119.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|238752128|ref|ZP_04613611.1| Peptidoglycan-associated lipoprotein [Yersinia rohdei ATCC 43380]
 gi|238765244|ref|ZP_04626173.1| Peptidoglycan-associated lipoprotein [Yersinia kristensenii ATCC
           33638]
 gi|332160930|ref|YP_004297507.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|122090106|emb|CAL12969.1| peptidoglycan-associated lipoprotein Pal [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238696516|gb|EEP89304.1| Peptidoglycan-associated lipoprotein [Yersinia kristensenii ATCC
           33638]
 gi|238709705|gb|EEQ01940.1| Peptidoglycan-associated lipoprotein [Yersinia rohdei ATCC 43380]
 gi|318604837|emb|CBY26335.1| 18k peptidoglycan-associated outer membrane lipoprotein;
           Peptidoglycan-associated lipoprotein precursor; Outer
           membrane protein P6; OmpA/MotB precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665160|gb|ADZ41804.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864066|emb|CBX74143.1| peptidoglycan-associated lipoprotein [Yersinia enterocolitica
           W22703]
          Length = 168

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|85859515|ref|YP_461717.1| OmpA family outer membrane protein [Syntrophus aciditrophicus SB]
 gi|85722606|gb|ABC77549.1| outer membrane protein A protein family [Syntrophus aciditrophicus
           SB]
          Length = 226

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 22/166 (13%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ--RNTP-------- 235
           +  K R   LA ++    + + AD         + + G   S +D    N P        
Sbjct: 68  LALKPRTPALAVRVPEATASITADGPPTEKQTVSAKAGNNSSAVDITGSNRPDHVCVPTI 127

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
            F  +           L ++   L    +    + + GHT           N  LSL RA
Sbjct: 128 YFRFNRFDVSNYEKDQLDRLVSRLKERPDRPRELRVVGHTCDL---GSHPYNDHLSLMRA 184

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            S    L ++G    ++S+  G            +   NRR++I +
Sbjct: 185 ESVAVYLGRNGF---KVSEAKGEGKRSPVSK---VGKLNRRVEIEI 224


>gi|167855024|ref|ZP_02477798.1| outer membrane protein precursor PalA [Haemophilus parasuis 29755]
 gi|167853872|gb|EDS25112.1| outer membrane protein precursor PalA [Haemophilus parasuis 29755]
          Length = 153

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T  G+ +  +  + NT  FD  S     E   +L    + L  S   +++ GH D    R
Sbjct: 38  TFGGMSVQDLQTRYNTVYFDFDSYTVKAEDQQLLDAHAQYLVASKGKVTVAGHADE---R 94

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
                N  L   RA +    L   G     ++ +S +   +  +   S+   S NRR
Sbjct: 95  GTPEYNIALGQRRADAVKDFLATKG--ASNVATVS-YGEEKPAVLGHSEADYSKNRR 148


>gi|152968039|ref|YP_001363823.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
 gi|151362556|gb|ABS05559.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216]
          Length = 180

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 21/136 (15%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDA 274
           + +    G  I++       +F   S+         L  I   +       I + GHTD 
Sbjct: 55  VVQPVPEGESITVGAD---VLFAFGSADLPASAAGQLAGIGARIGRGHPTAIRVEGHTDG 111

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKS--GVSEDRISKISGFAHHRLKIA-------SD 325
                    N  LS  RA +    L  +  GV   +     GF   R            D
Sbjct: 112 I---GDDAANQSLSERRAAAVAAALSAAAAGVPVQQ----EGFGETRPLRPETTASGEDD 164

Query: 326 PM-NSANRRIDILVED 340
           P   +ANRR+ +++ D
Sbjct: 165 PAARAANRRVTVVLRD 180


>gi|228471204|ref|ZP_04056017.1| OmpA family protein [Porphyromonas uenonis 60-3]
 gi|228307019|gb|EEK16101.1| OmpA family protein [Porphyromonas uenonis 60-3]
          Length = 338

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 11/229 (4%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N   +K       +   +    I +           N +     +G  +    D  K++ 
Sbjct: 114 NLNAMKASVPTFAQPAMQAGQPISWGGQLYYPAGSSNLVVTQGAQGAPVANDADKIKALE 173

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
            E           +    +  ++L  L ++I           +               + 
Sbjct: 174 DELARLKEAQQNPQRNDDQIAQQLAALRQQIDELEKAPAQAPVYNYDNRRVIHQDRSRNN 233

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTD-ASPFRNIARDNWR 286
           +    +  F  +S +   E +  ++ + + V+     ++ + G+     P     R    
Sbjct: 234 VQLSRSVFFKVNSDVLNAEGLEAVRNVADFVIGDPRALVLVYGYASIDGPVAFNNR---- 289

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           L+  RA S  + L  +GV    I +            +D      RR+D
Sbjct: 290 LAAKRAASVIKALQAAGVPAAAIKRYDNGVDTTPSKRTDA-----RRVD 333


>gi|190895030|ref|YP_001985323.1| putative outer membrane lipoprotein [Rhizobium etli CIAT 652]
 gi|190700691|gb|ACE94773.1| probable outer membrane lipoprotein [Rhizobium etli CIAT 652]
 gi|327194360|gb|EGE61220.1| putative outer membrane lipoprotein [Rhizobium etli CNPAF512]
          Length = 178

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L  +   ++ ++G  D S   +  +    LS  RA
Sbjct: 68  RIYFKQDSATLDSVAMATLDNQAAWLNRNPTWLLKLQGFADDSGSPSKMQT---LSQKRA 124

Query: 293 YSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPM-NSANRRI 334
            +A   L   GV   R+    G+     ++  +D      NRR+
Sbjct: 125 DAAMAYLASKGVDPKRMWA-KGYGNDREVRDCTDRSCKVQNRRV 167


>gi|149174963|ref|ZP_01853587.1| hypothetical protein PM8797T_11324 [Planctomyces maris DSM 8797]
 gi|148846300|gb|EDL60639.1| hypothetical protein PM8797T_11324 [Planctomyces maris DSM 8797]
          Length = 262

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           K V    TR G+ + +       ++   +           L  +   LA     I +R H
Sbjct: 125 KDVRVYRTREGVPVPV----GRTLYYNQTDIDLDARRREKLDLMIPELAGKPNKIELRSH 180

Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMN 328
           T   P    +   D   L+  R  +    L++ G+   RI +I+  A     + + D  +
Sbjct: 181 TSVKPLPADSPIHDKLILTYQRGRAVMLYLIQKGIEPKRI-RITAAADSEPPLQTGDEQS 239

Query: 329 SANRRIDILVED 340
               R+D+L+ D
Sbjct: 240 EQMDRLDVLLLD 251



 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINA-TDDDTKKAIEQYFN 70
          DD P  +  W + Y D M++L+ FF+++  ++   +D+  +AI +   
Sbjct: 27 DDAPPGVPEWVVTYGDMMSLLLTFFIMLVSLSEIVNDEKYRAILESIQ 74


>gi|330894565|gb|EGH27226.1| OmpA/MotB [Pseudomonas syringae pv. mori str. 301020]
          Length = 73

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
           N  LS  RA S    L++ GV   R+  +  G  +      S+   + NRR+++ + +
Sbjct: 4   NQSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 61


>gi|296410008|gb|ADH15780.1| OmpP6 [Haemophilus influenzae]
          Length = 136

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
            +  + NT  F         E + +L      L  +    + + G+TD    R     N 
Sbjct: 29  DLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE---RGTPEYNI 85

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 86  ALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 134


>gi|220935619|ref|YP_002514518.1| sodium-type flagellar protein MotY, putative [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996929|gb|ACL73531.1| sodium-type flagellar protein MotY, putative [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 280

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 83/296 (28%), Gaps = 26/296 (8%)

Query: 41  MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100
           M  LMA   ++ +  A                   + +A          P        + 
Sbjct: 1   MARLMA---ILMLFAAAPAWAGVEFGARLEQSFWTVSSAPDACELRHEIPRYGVARFQER 57

Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160
           +  E   +   DL   S  + +      N    L     ++    + T   ++   L   
Sbjct: 58  AGHELGFRLDTDLSGASGREARLVLVPPNWRHDLRPRHLADVGSEARTLSLDRATTLELF 117

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
             LE        +  P     ++ A     R +D+  + S   +G++  +      +   
Sbjct: 118 HALEAGYQLSVEHPSPGAGGFQVAAAVSTVRFRDVQAEFSRCRAGMIQLDFRPVAEWRVH 177

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRN 279
                           FD + S         L++ +    A     + + GH D    R 
Sbjct: 178 ----------------FDTNLSRLDARAHETLREVLTAWRAQRHMRVIVAGHAD---VRG 218

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
               N  LS  RA +    L   G+  +RI  +  F         +     + NRR
Sbjct: 219 GDTINDPLSRRRAEAVRTFLDVYGIPRNRIE-LRSFGATWPLDPGEGEAAWALNRR 273


>gi|254428548|ref|ZP_05042255.1| peptidoglycan-associated lipoprotein, putative [Alcanivorax sp.
           DG881]
 gi|196194717|gb|EDX89676.1| peptidoglycan-associated lipoprotein, putative [Alcanivorax sp.
           DG881]
          Length = 190

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L+     L ++    I + GH D    R     N  LS  R+ + 
Sbjct: 85  FAFDSNTVPAAAFETLRAHATYLKNNANAKIRLEGHADE---RGTREYNVALSERRSKAV 141

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336
            + L   GV+  ++  +S             M+ + NRR++I
Sbjct: 142 EKFLRVQGVASSQLEIVSYGEEKPAAFGHGEMDWAKNRRVEI 183


>gi|21672596|ref|NP_660663.1| outer membrane protein A precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090843|sp|Q8K9L4|OMPA_BUCAP RecName: Full=OmpA-like protein; Flags: Precursor
 gi|21623226|gb|AAM67874.1| outer membrane protein A precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 347

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   P +   LQK+ + + +       I + GH D     N    N +LS +RAY
Sbjct: 233 FPFNSTELKPISHDKLQKLQKEIKNIKSKNIFIMLSGHAD--RIGNKEY-NQKLSENRAY 289

Query: 294 SAYQVLMKSGVSEDRISKISGFA--------------HHRLKIASDPMNSANRRIDILVE 339
           S        G+S+D+I  I G                   L I+     + +RR++I V 
Sbjct: 290 SIKNYFTSHGISQDKI-SIQGMGNEFSLTNQICKDVSDRPLLIS---CLAPDRRVEIEVL 345

Query: 340 D 340
            
Sbjct: 346 S 346


>gi|288958040|ref|YP_003448381.1| MotB protein [Azospirillum sp. B510]
 gi|288910348|dbj|BAI71837.1| MotB protein [Azospirillum sp. B510]
          Length = 240

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 8/178 (4%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             SE      TR ++       +     S   +             +  +    L  LA 
Sbjct: 44  SMSEPEAERWTRLAKGVAQSIPAARSTASAPSDRPADPGAAFNAMAVEARAAIDLDYLAA 103

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
            + S L   V   +V           ++I +       +FD + +   PE   VL  +G 
Sbjct: 104 LLGSQLRSNVELAVVD---VRREDDRVVIRL---PGERIFDLTGAAFTPEGRRVLFLLGA 157

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           V+      I + GH  A    +     W  +L RA +    L ++G   D +++    
Sbjct: 158 VIGRIGNRIELVGH--AEHEDSTGGVAWERALTRAVAVSAALRETGYRRDLVARAVMM 213



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 30/80 (37%)

Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73
            I  +    D        W I + D +++++AFF++M+ ++  + +    + +      
Sbjct: 5  PGIPNRAGTDDHAGQRKTLWLISFTDLISLMLAFFVLMYSMSEPEAERWTRLAKGVAQSI 64

Query: 74 KNLMTASKGIFDEQNPPERS 93
              + +    D    P  +
Sbjct: 65 PAARSTASAPSDRPADPGAA 84


>gi|238797729|ref|ZP_04641223.1| Peptidoglycan-associated lipoprotein [Yersinia mollaretii ATCC
           43969]
 gi|238718370|gb|EEQ10192.1| Peptidoglycan-associated lipoprotein [Yersinia mollaretii ATCC
           43969]
          Length = 177

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 42  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 101

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 102 NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 158

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 159 VLGHDEAAFAKNRR 172


>gi|145588462|ref|YP_001155059.1| OmpA/MotB domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046868|gb|ABP33495.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 167

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)

Query: 231 QRNTPMFDKS------SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
              +P+F+KS            +   +L      L  + +  I I+G+TD    R  A  
Sbjct: 52  DPKSPLFEKSVYFGFDEYTVQTKYQKMLSAHASYLKANPKQKIIIQGNTDE---RGTAEY 108

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           N  L   R+ +  + L   GVS+D++  +S F   + K   D     + NRR DI+
Sbjct: 109 NLALGQRRSDAVRKSLNLMGVSDDQMEAVS-FGKEKPKAEGDSEAAFAENRRADIV 163


>gi|302553861|ref|ZP_07306203.1| type VI secretion system OmpA/MotB [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471479|gb|EFL34572.1| type VI secretion system OmpA/MotB [Streptomyces viridochromogenes
           DSM 40736]
          Length = 213

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+    +    +  I E + A + + I + G TD             LS  RA +
Sbjct: 106 LFGKDSAKLGAQAKARIADIAEEIKAQNAKKIRVFGFTDNLGSSAHGD---ALSRRRASA 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              VL           +  G+        +        NRR+++
Sbjct: 163 VQGVLEGELADSGITYETRGYGEQYPIADNSTEAGRKKNRRVEV 206


>gi|91781922|ref|YP_557128.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|296162179|ref|ZP_06844975.1| peptidoglycan-associated lipoprotein [Burkholderia sp. Ch1-1]
 gi|91685876|gb|ABE29076.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
 gi|295887565|gb|EFG67387.1| peptidoglycan-associated lipoprotein [Burkholderia sp. Ch1-1]
          Length = 169

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDDYQSLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRSLSLMGVTDSQMEAVSLGKEKPQATGHDESSWAQNRRADLV 166


>gi|148977417|ref|ZP_01814017.1| peptidoglycan-associated lipoprotein [Vibrionales bacterium SWAT-3]
 gi|145963369|gb|EDK28634.1| peptidoglycan-associated lipoprotein [Vibrionales bacterium SWAT-3]
          Length = 180

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S    +   +L      L  +    ++I GH D    R     N  L   RA + 
Sbjct: 80  FAFDNSTIAGDYEEMLAAHAAYLVKNVDMKVTIEGHADE---RGTPEYNIALGERRAQAV 136

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            + L   GV  D+IS +S +   +  +   S+ + + NRR
Sbjct: 137 AKYLQALGVQADQISIVS-YGEEKPLLLGQSEDVYAKNRR 175


>gi|322515359|ref|ZP_08068353.1| outer membrane protein A [Actinobacillus ureae ATCC 25976]
 gi|322118586|gb|EFX90814.1| outer membrane protein A [Actinobacillus ureae ATCC 25976]
          Length = 156

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   S    +    L  I + +  S  + ++I G+TD     + A  N +LS +R
Sbjct: 57  GDFLFDFDKSNLTAKGKATLNNIAQEIKASGAKKVAITGYTD--RLGSPAY-NQKLSQER 113

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A SA   L+  GV   ++  +     +++K    P    NRR+ I
Sbjct: 114 ANSAKAYLVNQGVKA-QMKAVGRGEANQVKSCLKP----NRRVHI 153


>gi|296410010|gb|ADH15781.1| OmpP6 [Haemophilus haemolyticus]
          Length = 149

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
           T  G  +S +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 32  TFGGYSVSDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAYLNATPAAKVLVEGNTDE--- 88

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 89  RGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 145


>gi|284038865|ref|YP_003388795.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
 gi|283818158|gb|ADB39996.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74]
          Length = 145

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD+SS +  P     L  + +VL     +I+ + G+TD          N  L+  RA + 
Sbjct: 40  FDQSSPVLRPGVKTTLDSLAQVLVEQPALIATVTGYTD---LIGKRELNLALAEYRAKAV 96

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSAN---RRIDILVEDRQ 342
              L + GV +DRI      A+                N   RR+ + +  R+
Sbjct: 97  GSYLAQRGVRKDRII-----ANWEGPDKKATTTGSEGVNTIGRRVVVQLLPRE 144


>gi|307728550|ref|YP_003905774.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1003]
 gi|323524837|ref|YP_004226990.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1001]
 gi|307583085|gb|ADN56483.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1003]
 gi|323381839|gb|ADX53930.1| peptidoglycan-associated lipoprotein [Burkholderia sp. CCGE1001]
          Length = 169

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDDYQSLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRSLSLMGVTDSQMEAVSLGKEKPQATGHDESSWAQNRRADLV 166


>gi|207110190|ref|ZP_03244352.1| flagellar motor protein MotB [Helicobacter pylori HPKX_438_CA4C1]
          Length = 109

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + KK    + P     W + YADF+++L+A F+ ++ I+A +    +A++  F       
Sbjct: 1   MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124
                       PP+   + +   S        + + K     + +  
Sbjct: 60  PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107


>gi|238793898|ref|ZP_04637518.1| Peptidoglycan-associated lipoprotein [Yersinia intermedia ATCC
           29909]
 gi|238726801|gb|EEQ18335.1| Peptidoglycan-associated lipoprotein [Yersinia intermedia ATCC
           29909]
          Length = 177

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 42  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 101

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 102 NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 158

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 159 VLGHDEAAFAKNRR 172


>gi|328470528|gb|EGF41439.1| hypothetical protein VP10329_07007 [Vibrio parahaemolyticus 10329]
          Length = 187

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L +  + I + GHTD          N  LSL RA +A + L K     +RI +   F   
Sbjct: 109 LVNEDKRILVEGHTDDV---GSQAYNKSLSLRRASTASKYLKKDLELGNRIVE-KAFGES 164

Query: 319 RL--KIASDPMNSANRRIDILVE 339
               K+  + ++  NRR+ + +E
Sbjct: 165 APICKVNENKLSGCNRRVVLTIE 187


>gi|313677243|ref|YP_004055239.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312943941|gb|ADR23131.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 771

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +S    +    LQ+I + +  +    I I G+  A         N +LS  RA   
Sbjct: 668 FDVGASEFDAKYNEQLQEIYQKIKGNEQLGIQISGYASAE---GDPEFNRKLSNKRAIEV 724

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
                  G+   RI    G+   R         + NRR+++ + D
Sbjct: 725 VNFFNYKGIVRRRIIA-KGYGSTRADTKD---AAENRRVEVQIVD 765


>gi|297157602|gb|ADI07314.1| secreted protein [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FDK+SS    E    ++ I + +   +   + + G TD       A    +LS +RA +
Sbjct: 123 LFDKNSSKLGGEANARIRAIAQEIEKQNATSVRVFGFTDDL---GSALHGLKLSKERANA 179

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
               L  + +      +I G+         +++     NRR+++
Sbjct: 180 VQHALSAN-LDSSVQYQIRGYGEQYPIADNSTEEGRKKNRRVEV 222


>gi|29347201|ref|NP_810704.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339100|gb|AAO76898.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD---ASPFRNIARDNWRL 287
           +    F  +S+    +    +  + E +  +    +++ G+ D    +P  N+      L
Sbjct: 294 KQNVFFALNSARIQTDQQSKIAALVEYMEKNPAAKVNVTGYADKETGNPVINLK-----L 348

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           S  RA +  + L   G+S DRI  I          ++        R+ I +
Sbjct: 349 SEARAKNVAEALKAKGISSDRI-AIDFKGDTVQPYST----PKENRVSICI 394


>gi|241113057|ref|YP_002972892.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240861265|gb|ACS58931.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 184

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+   P  +  L      L  +   ++ ++G  D S           LS  RA
Sbjct: 74  RIYFKQDSATLDPVAMATLDNQAAWLNRNPSWLLKLQGFADDSGSAAKMET---LSQKRA 130

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334
            +A   L+  GV   R+    G+ + R  +      S    NRR+
Sbjct: 131 DAAMAYLVSKGVDARRMWA-KGYGNDRE-VRDCTERSCKVQNRRV 173


>gi|162453377|ref|YP_001615744.1| hypothetical protein sce5101 [Sorangium cellulosum 'So ce 56']
 gi|161163959|emb|CAN95264.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 190

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   SS PLP+  V L+ + + L  S+     I + G   A P    A  N  LSL RA 
Sbjct: 81  FAFDSSEPLPQEHVELRALVDCLRSSSLEGARIELVG--RADPRGTAAY-NQDLSLRRAA 137

Query: 294 SAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS--ANRRIDILV 338
              ++L+K G+  DRI ++ +G +     + + PM S   +RR+D+ +
Sbjct: 138 RVKEILVKEGIPADRITTRATGASE---AVGAQPMYSYGYDRRVDVAL 182


>gi|110833620|ref|YP_692479.1| peptidogycan-associated lipoprotein [Alcanivorax borkumensis SK2]
 gi|110646731|emb|CAL16207.1| Peptidogycan-associated lipoprotein [Alcanivorax borkumensis SK2]
          Length = 189

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         L+     L ++    I + GH D    R     N  LS  R+ + 
Sbjct: 84  FAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHADE---RGTREYNVALSERRSKAV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336
            + L   GV+  ++  +S +   +      S+   + NRR++I
Sbjct: 141 EKFLRVQGVASSQLEIVS-YGEEKPAAFGHSEMDWAKNRRVEI 182


>gi|238790499|ref|ZP_04634268.1| Peptidoglycan-associated lipoprotein [Yersinia frederiksenii ATCC
           33641]
 gi|238721443|gb|EEQ13114.1| Peptidoglycan-associated lipoprotein [Yersinia frederiksenii ATCC
           33641]
          Length = 168

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNMSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|307261911|ref|ZP_07543571.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868382|gb|EFN00199.1| Outer membrane protein P5 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 339

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 248 LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 303

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A +    L+  G +   ++ + G+      
Sbjct: 304 AETVANYLVSKGQNPANVTAV-GYGEANPV 332


>gi|222111071|ref|YP_002553335.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY]
 gi|221730515|gb|ACM33335.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY]
          Length = 179

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           GV+   T     + +        F    +   P     L  + + +    +   + G  D
Sbjct: 61  GVVIMITEDAASVVVEGGVVKFFFATGKAELAPGANEALGDVVKGVVDGGKTAVVSGFHD 120

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NS 329
           A+     A  N  L+  RA +    L   GV+E+++          LK          N+
Sbjct: 121 AT---GDAAVNAELAKQRALAVRDALKALGVAEEKV---------ELKKPEATQGSGSNA 168

Query: 330 ANRRIDILV 338
             RR+++++
Sbjct: 169 EARRVEVIL 177


>gi|121594411|ref|YP_986307.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42]
 gi|120606491|gb|ABM42231.1| OmpA/MotB domain protein [Acidovorax sp. JS42]
          Length = 179

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           GV+   T     + +        F    +   P     L  + + +    +   + G  D
Sbjct: 61  GVVIMITEDAASVVVEGGVVKFFFATGKAELAPGANEALGDVVKGVVDGGKTAVVSGFHD 120

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NS 329
           A+     A  N  L+  RA +    L   GV+E+++          LK          N+
Sbjct: 121 AT---GDAAVNAELAKQRALAVRDALKALGVAEEKV---------ELKKPEATQGSGSNA 168

Query: 330 ANRRIDILV 338
             RR+++++
Sbjct: 169 EARRVEVIL 177


>gi|160874991|ref|YP_001554307.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|160860513|gb|ABX49047.1| OmpA/MotB domain protein [Shewanella baltica OS195]
 gi|315267223|gb|ADT94076.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 276

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              ++A   + ++    ERS  N +D S      + + + +            L   +  
Sbjct: 19  VASVSARVSLQNQAQGQERSLDNDVDASGMAMDGEYANEDEQPEALIGLGGGALVGALVG 78

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                       +L   S    D       + ++ + +   L  LS ++  A KR     
Sbjct: 79  GPVGAIIGAFTGTLIGKSVSDTDTLHVQQRQINLQESQ---LSELSVKQQAAEKRASEYA 135

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              +++   LS        +  L      G+ +          F   SS      +  L 
Sbjct: 136 KAQQELDELLS-------AQRQLLSELALGLNVQ---------FRTGSSEVESHFLPQLD 179

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + EV+  S E  + ++G+ D    R     N  LS  R       L+K GV+ +R++  
Sbjct: 180 DVAEVMNLSPELNLELKGYADR---RGDVSYNQALSEQRLLEVRGYLIKQGVAAERMTTQ 236

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDILVED 340
           +  A   L+   D  +   +RR+ + ++ 
Sbjct: 237 AFGALSPLQAEQDRESDVFDRRVTLTLQP 265


>gi|86360406|ref|YP_472294.1| hypothetical protein RHE_PE00129 [Rhizobium etli CFN 42]
 gi|86284508|gb|ABC93567.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 653

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
                + + GHTD    +     N +LS  RA +    L   G+         G      
Sbjct: 573 QKPGRVILIGHTDR---KGGDDYNQKLSERRAQAVADFLKNHGIDAT--IDAEGRGASEP 627

Query: 321 KIAS-------DPMNSANRRID 335
              +       D +++ NRR++
Sbjct: 628 VDVTATANLTEDDIDALNRRVE 649


>gi|194295652|gb|ACF40853.1| outer membrane protein [Riemerella anatipestifer]
          Length = 270

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 189 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 245

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GV+  ++  
Sbjct: 246 VVAALEARGVNPSQLKS 262


>gi|194295646|gb|ACF40850.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295648|gb|ACF40851.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295650|gb|ACF40852.1| outer membrane protein [Riemerella anatipestifer]
 gi|194295654|gb|ACF40854.1| outer membrane protein [Riemerella anatipestifer]
          Length = 270

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +    E+   L +  EV+   +     + GHTD    +  A  N +LS +RA S
Sbjct: 189 FFNFNKASIRSESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 245

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GV+  ++  
Sbjct: 246 VVAALEARGVNPSQLKS 262


>gi|148475217|dbj|BAF63174.1| major outer membrane protein OmpAI [Aeromonas veronii]
          Length = 340

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 220 LFAFGKDTLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 276

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  I G         +
Sbjct: 277 RTVANFLVSKGMAASKV-AIEGRGEANPVTGT 307


>gi|148558474|ref|YP_001257134.1| putative lipoprotein [Brucella ovis ATCC 25840]
 gi|163844256|ref|YP_001621911.1| hypothetical protein BSUIS_B0062 [Brucella suis ATCC 23445]
 gi|254699373|ref|ZP_05161201.1| hypothetical protein Bsuib55_00717 [Brucella suis bv. 5 str. 513]
 gi|254706382|ref|ZP_05168210.1| hypothetical protein BpinM_05165 [Brucella pinnipedialis
           M163/99/10]
 gi|254711327|ref|ZP_05173138.1| hypothetical protein BpinB_13940 [Brucella pinnipedialis B2/94]
 gi|254711926|ref|ZP_05173737.1| hypothetical protein BcetM6_00730 [Brucella ceti M644/93/1]
 gi|254714996|ref|ZP_05176807.1| hypothetical protein BcetM_00740 [Brucella ceti M13/05/1]
 gi|256014854|ref|YP_003104863.1| lipoprotein, putative [Brucella microti CCM 4915]
 gi|256030043|ref|ZP_05443657.1| hypothetical protein BpinM2_05215 [Brucella pinnipedialis
           M292/94/1]
 gi|256059695|ref|ZP_05449890.1| hypothetical protein Bneo5_05015 [Brucella neotomae 5K33]
 gi|256158216|ref|ZP_05456125.1| hypothetical protein BcetM4_05150 [Brucella ceti M490/95/1]
 gi|256252843|ref|ZP_05458379.1| hypothetical protein BcetB_00720 [Brucella ceti B1/94]
 gi|260166906|ref|ZP_05753717.1| lipoprotein, putative [Brucella sp. F5/99]
 gi|261216699|ref|ZP_05930980.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261219930|ref|ZP_05934211.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313828|ref|ZP_05953025.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261318931|ref|ZP_05958128.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261319567|ref|ZP_05958764.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261323667|ref|ZP_05962864.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261749823|ref|ZP_05993532.1| TraQ protein [Brucella suis bv. 5 str. 513]
 gi|261756291|ref|ZP_06000000.1| outer membrane protein OprF [Brucella sp. F5/99]
 gi|265987066|ref|ZP_06099623.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996727|ref|ZP_06109284.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|148369759|gb|ABQ62631.1| putative lipoprotein [Brucella ovis ATCC 25840]
 gi|163674979|gb|ABY39089.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997514|gb|ACU49201.1| lipoprotein, putative [Brucella microti CCM 4915]
 gi|260918514|gb|EEX85167.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260921788|gb|EEX88356.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292257|gb|EEX95753.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261298154|gb|EEY01651.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261299647|gb|EEY03144.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261302854|gb|EEY06351.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736275|gb|EEY24271.1| outer membrane protein OprF [Brucella sp. F5/99]
 gi|261739576|gb|EEY27502.1| TraQ protein [Brucella suis bv. 5 str. 513]
 gi|262551024|gb|EEZ07185.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264659263|gb|EEZ29524.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 172

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 26/171 (15%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           P +S    + +      ++L       L     +   +  ++        +S+   ++  
Sbjct: 23  PTVSGRHRIPINSPAAQEEL------RLQVFPQEPTAQATMWPARPPKQTVSVYFPQDVT 76

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYS 294
           +F  +S+         + ++  +L    + I++RG TD + P         +++  RA +
Sbjct: 77  VFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARVRALA 124

Query: 295 AYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            Y  L+  GV   RI    + +  +A +       P    NRR+DI +  +
Sbjct: 125 IYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|303252130|ref|ZP_07338298.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247466|ref|ZP_07529511.1| hypothetical protein appser2_4620 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648913|gb|EFL79101.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855969|gb|EFM88127.1| hypothetical protein appser2_4620 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 283

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              +   V+  +   L  S  E + + G+TD        + N  LS  RA      L++ 
Sbjct: 152 LTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRRANMVKARLVQQ 208

Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
           GV+ + I+ +  G A         P           NRR+++
Sbjct: 209 GVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249


>gi|262066774|ref|ZP_06026386.1| putative chemotaxis protein MotB [Fusobacterium periodonticum ATCC
           33693]
 gi|291379577|gb|EFE87095.1| putative chemotaxis protein MotB [Fusobacterium periodonticum ATCC
           33693]
          Length = 232

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 22/118 (18%)

Query: 193 QDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIP 244
           Q+L KK    + G   +  NI+  +  +    GI + +      I   +  +F+    + 
Sbjct: 46  QELRKK-EEIIEGFTGLKKNIISKIQKDFEERGIKVDLDPQTGTIKIDDKILFNTGEYLL 104

Query: 245 LPETIVVLQKIGEV-----LAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRA 292
            PE    L +   +     L           I I GHTD          N  LS  RA
Sbjct: 105 KPEGKKYLNEFVPIYINLLLNDEQVKKELSQIIIEGHTDDV---GSYIYNMELSQKRA 159


>gi|254695204|ref|ZP_05157032.1| outer membrane protein OprF [Brucella abortus bv. 3 str. Tulya]
 gi|261215567|ref|ZP_05929848.1| TraQ protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917174|gb|EEX84035.1| TraQ protein [Brucella abortus bv. 3 str. Tulya]
          Length = 172

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLD 290
           ++  +F  +S+         + ++  +L    + I++RG TD + P         +++  
Sbjct: 73  QDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARV 120

Query: 291 RAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           RA + Y  L+  GV   RI    + +  +A +       P    NRR+DI +  +
Sbjct: 121 RALAIYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|157369523|ref|YP_001477512.1| peptidoglycan-associated outer membrane lipoprotein [Serratia
           proteamaculans 568]
 gi|157321287|gb|ABV40384.1| Peptidoglycan-associated lipoprotein [Serratia proteamaculans 568]
          Length = 171

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
           + +  + + N   F         E   +L      L ++    +++ GH D    R    
Sbjct: 58  LQMQELQKNNIVYFGLDKYDVSSEFAQMLDAHAAFLRNNPSYKVTVEGHADE---RGTPE 114

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            N  L   R+ S    L   GVS D+IS +S G     +    +   + NRR
Sbjct: 115 YNIALGERRSNSVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 166


>gi|116327088|ref|YP_796808.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116332255|ref|YP_801973.1| endoflagellar motor protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116119832|gb|ABJ77875.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116125944|gb|ABJ77215.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 242

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          ++++     ++  N   W + YAD +T+L+  F++M+ I+  D    K +  
Sbjct: 8  LLERAHRKGESHENRERWLLTYADMITLLLGLFIIMYSISQVDQAKLKQVAD 59


>gi|315266048|gb|ADT92901.1| OmpA/MotB domain protein [Shewanella baltica OS678]
          Length = 365

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           N V   + + T     I + +     +F+  SS      +  LQ I   L    +  + +
Sbjct: 232 NSVTNTVIKATP----IELEEVTFPVLFNFDSSEL--FFVDSLQIIINRLIQFPQATVIL 285

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDP 326
           RG++D+      +  N  LS  R  S  Q L + GV   +I     +          S+ 
Sbjct: 286 RGYSDSQ---GSSEYNLALSKRRTDSITQYLTEHGVKPQQIIA-EHYGEQYPVTDKISEQ 341

Query: 327 MNSANRRIDILV 338
               NRR+ +L+
Sbjct: 342 HKHLNRRVQVLL 353


>gi|296131330|ref|YP_003638580.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
 gi|296023145|gb|ADG76381.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109]
          Length = 412

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +F    +     T  +   +         V+ + GHT             R+S DRA + 
Sbjct: 295 LFGPEETELSS-TEPLRGVVARATEEPAWVVRVEGHTADFGTPEGRA---RVSQDRADAV 350

Query: 296 YQVLMKSGVSEDRISKISGFAHHR--------LKIASDPMNS-ANRRIDI 336
              L   GV  + +  +   A            +   D   +  NRR++I
Sbjct: 351 AAALRSQGV-TNEVVAVGRGADRPRADEWPAGPRGPHDTAAADVNRRVEI 399


>gi|160873823|ref|YP_001553139.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195]
 gi|160859345|gb|ABX47879.1| OmpA/MotB domain protein [Shewanella baltica OS195]
          Length = 369

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268
           N V   + + T     I + +     +F+  SS      +  LQ I   L    +  + +
Sbjct: 236 NSVTNTVIKATP----IELEEVTFPVLFNFDSSEL--FFVDSLQIIINRLIQFPQATVIL 289

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDP 326
           RG++D+      +  N  LS  R  S  Q L + GV   +I     +          S+ 
Sbjct: 290 RGYSDSQ---GSSEYNLALSKRRTDSITQYLTEHGVKPQQIIA-EHYGEQYPVTDKISEQ 345

Query: 327 MNSANRRIDILV 338
               NRR+ +L+
Sbjct: 346 HKHLNRRVQVLL 357


>gi|114570965|ref|YP_757645.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10]
 gi|114341427|gb|ABI66707.1| OmpA/MotB domain protein [Maricaulis maris MCS10]
          Length = 173

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +         E    L++    LA      I + G+ D    R     N  L   R
Sbjct: 63  DRVFYGLDRHDLSDEARATLRRQAAWLASYPGTRILVAGNCDE---RGTREYNLALGARR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANR 332
           A +A   L+  GV   RI   + +   R     +S+   + NR
Sbjct: 120 ASAARTYLISQGVDPSRI-STTSYGKERPSCSQSSETCWAVNR 161


>gi|307823678|ref|ZP_07653906.1| peptidoglycan-associated lipoprotein [Methylobacter tundripaludum
           SV96]
 gi|307734972|gb|EFO05821.1| peptidoglycan-associated lipoprotein [Methylobacter tundripaludum
           SV96]
          Length = 191

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS    + + V+    + L       + + GH D    R     N  L   RA S 
Sbjct: 88  FMLDSSQVQDDFVPVIAAHAQYLVAHPGQRVVMEGHGDE---RGSREYNIALGEQRAKSI 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341
             ++   GV++ ++  +S +   +       +     NRR++++ + +
Sbjct: 145 ASMMKVQGVADGQLEVVS-YGEEKPASLGHDEASWELNRRVELVYQGK 191


>gi|311278468|ref|YP_003940699.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308747663|gb|ADO47415.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 160

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 6/109 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F  +      ++   +  +   LA +      + GHTD          N  LSL R
Sbjct: 52  DKILFSTNDYQLNTQSRQQIAAMASRLAATGITHARMDGHTDNY---GEDSYNEALSLKR 108

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           A        +            G        ++      S NRR+ I++
Sbjct: 109 ADRVADAWAEGARIPRGNLTTQGLGKKYPVASNATAQGRSENRRVTIVI 157


>gi|220921474|ref|YP_002496775.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219946080|gb|ACL56472.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060]
          Length = 612

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 30/116 (25%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD---------------------- 273
           F   S+    +    L  +  +        I + GH D                      
Sbjct: 492 FAPGSADLQADFYPTLDDLATLARTCPGARIEVAGHDDPPGTVPPAKPPAPKPSAPKPAK 551

Query: 274 -------ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322
                  A P       +  L   RA +    L+K+GV  DR++ +SG A  R   
Sbjct: 552 SAKGKAKAEPVPEPEMPDVTLPQRRAAAIVDYLLKAGVPADRVAAVSGDAQRRAVA 607


>gi|330818392|ref|YP_004362097.1| Cytochrome c oxidase, subunit II [Burkholderia gladioli BSR3]
 gi|327370785|gb|AEA62141.1| Cytochrome c oxidase, subunit II [Burkholderia gladioli BSR3]
          Length = 537

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 18/82 (21%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-----SKISG 314
           AH    +++ G+TD +     A  N  L+  RA +    L  +GV+EDRI       I+G
Sbjct: 465 AHPDAKLALSGYTDKT---GSASANAELAKHRAQAVRDALKAAGVAEDRIVLKKPQTITG 521

Query: 315 FAHHRLKIASDPMNSANRRIDI 336
            A  +            RR++I
Sbjct: 522 GADAKEA----------RRVEI 533


>gi|239816686|ref|YP_002945596.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239803263|gb|ACS20330.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 401

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 236 MFDKSS----SIPL-PETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           +F   S    + P       + L++I    A     + + GHT  +        N RLSL
Sbjct: 288 LFKPGSTDFLADPKISAAYPMWLRQIARQAAQIDSCVVVTGHTSRT---GSESVNERLSL 344

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343
            RA S    L+       +  + SG       +   A D  ++ +RR++  V   + 
Sbjct: 345 QRALSVKTRLVGEAPPLSKKLRESGMGFRENIVGTGADDASDALDRRVEFKVAPCEA 401


>gi|28900586|ref|NP_800241.1| hypothetical protein VPA0731 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840625|ref|ZP_01993292.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|260365466|ref|ZP_05778003.1| outer membrane protein [Vibrio parahaemolyticus K5030]
 gi|260877531|ref|ZP_05889886.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260897528|ref|ZP_05906024.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260901730|ref|ZP_05910125.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28808966|dbj|BAC62074.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149745713|gb|EDM56843.1| outer membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|308087083|gb|EFO36778.1| outer membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308090536|gb|EFO40231.1| outer membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308108906|gb|EFO46446.1| outer membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308114281|gb|EFO51821.1| outer membrane protein [Vibrio parahaemolyticus K5030]
          Length = 187

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L +  + I + GHTD          N  LSL RA +A + L K     +RI +   F   
Sbjct: 109 LVNEDKRILVEGHTDDV---GSQAYNKSLSLRRASTASKYLKKDLGLGNRIVE-KAFGES 164

Query: 319 RL--KIASDPMNSANRRIDILVE 339
               K+  + ++  NRR+ + +E
Sbjct: 165 APICKVNENKLSGCNRRVVLTIE 187


>gi|237739553|ref|ZP_04570034.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229423161|gb|EEO38208.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 232

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETI 249
            ++I    +GL   NI+  +  +    GI + I      I   +  +F+    +  PE  
Sbjct: 51  KEEIIEGFTGL-KKNIISKIQKDFEERGIKVDIDPQTGTIKIDDKILFNTGEYLLKPEGK 109

Query: 250 VVLQKIGEV-----LAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRA 292
             L     +     L           I I GHTD          N  LS  RA
Sbjct: 110 KYLNDFVPIYINLLLNDEEVKKELSQIIIEGHTDDV---GSYIYNMELSQKRA 159


>gi|54309732|ref|YP_130752.1| putative sodium-type flagellar protein MotY [Photobacterium
           profundum SS9]
 gi|46914170|emb|CAG20950.1| Putative sodium-type flagellar protein MotY [Photobacterium
           profundum SS9]
          Length = 296

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D  +      +   L +I + + +S ++  + +  ++D++        N  LS  RA  
Sbjct: 190 YDMDNDELNKPSQRRLAQITDFVRYSDDIDLVLLATYSDST---GGTNVNQSLSERRAKK 246

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
             +  M  G+ ++RI ++  +   R    +D     + NRR+ I +
Sbjct: 247 LEEYFMSLGLPKNRI-QVEAYGKRRPIADNDTPIGRNKNRRVVISL 291


>gi|186682639|ref|YP_001865835.1| OmpA/MotB domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186465091|gb|ACC80892.1| OmpA/MotB domain protein [Nostoc punctiforme PCC 73102]
          Length = 657

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S          +    + L       ++  G  D     +    N  LSL RA + 
Sbjct: 534 FDFDSDQLSSSETGKIDTFLDYLRRFPDVKVTPEGFADRRGGASGH--NLDLSLRRAQAV 591

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIAS-------DPMNSANRRI 334
              L   GV+E +IS ++ G                 +     NRR+
Sbjct: 592 GAALRAKGVAEAQISAVTIGSGSTEDFTPDATTNQDTEANRRGNRRV 638


>gi|251733505|emb|CAR82502.1| pal [Ensifer adhaerens]
          Length = 87

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + LA      ++I GH D    R     N  L   RA S   
Sbjct: 1   TDSTSVRADAQQTLDRQAQWLAKYPNYAVTIEGHADE---RGTREYNLALGARRAASTKD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLISRGVPANRLKTISYGKEKPVAVCDD 85


>gi|237743864|ref|ZP_04574345.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432895|gb|EEO43107.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 232

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 22/118 (18%)

Query: 193 QDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIP 244
           Q+L KK    + G   +  NI+  +  +    GI + +      I   +  +F+    + 
Sbjct: 46  QELRKK-EEIIEGFTGLKKNIISKIQKDFEERGIKVDLDPQTGTIKIDDKILFNTGEYLL 104

Query: 245 LPETIVVLQKIGEV-----LAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRA 292
            PE    L +   +     L           I I GHTD          N  LS  RA
Sbjct: 105 KPEGKKYLNEFVPIYINLLLNDEQVKKELSQIIIEGHTDDV---GSYIYNMELSQKRA 159


>gi|258542353|ref|YP_003187786.1| hypothetical protein APA01_12600 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633431|dbj|BAH99406.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636490|dbj|BAI02459.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639543|dbj|BAI05505.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642599|dbj|BAI08554.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645654|dbj|BAI11602.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648707|dbj|BAI14648.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651760|dbj|BAI17694.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654751|dbj|BAI20678.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 125

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLD---- 290
            F   S+        VL ++ E        I  + G+  A            LS D    
Sbjct: 27  FFSAGSTELDDNARNVLLQVAEKSKRHPSRIVKVEGYAHAGQ---------DLSADALLA 77

Query: 291 --RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             RA +  Q L + GV+ D I +       R   +S+ M   +RR++I + +
Sbjct: 78  IQRAKAVAQQLSEDGVAGDHIVQ-----TPRAPSSSEGMQVGSRRVEIELAN 124


>gi|189463470|ref|ZP_03012255.1| hypothetical protein BACCOP_04189 [Bacteroides coprocola DSM 17136]
 gi|265753822|ref|ZP_06089177.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189429899|gb|EDU98883.1| hypothetical protein BACCOP_04189 [Bacteroides coprocola DSM 17136]
 gi|263235536|gb|EEZ21060.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 468

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     +  + L ++  V       +S+ G  D+        +   LS  RA  
Sbjct: 369 FFQLNTARLTDTSQTLNLDELARVAKKYGLSVSVIGAADSMTGTASVNNV--LSASRADY 426

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR 332
             + L+K GVS D+I+K    G + +         N ANR
Sbjct: 427 IAEELIKRGVSGDKITKTHQGGISDYAP-------NEANR 459


>gi|329848731|ref|ZP_08263759.1| peptidoglycan-associated lipoprotein [Asticcacaulis biprosthecum
           C19]
 gi|328843794|gb|EGF93363.1| peptidoglycan-associated lipoprotein [Asticcacaulis biprosthecum
           C19]
          Length = 177

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD   S    +   VL      L       I I G+ D    R     N+ L   R
Sbjct: 68  DRVYFDTDQSSIRADAQAVLSAQAAWLVRYPAVKIRIEGNADE---RGTREYNFALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +    L   GV   RIS IS      +   +D      NR
Sbjct: 125 AQAVADFLTSKGVVPSRISTISYGKEQPIATGADEDAWQQNR 166


>gi|319794930|ref|YP_004156570.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315597393|gb|ADU38459.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 402

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 236 MFDKSSSI------PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           +F   S+             + L++I    A     + + GHT  +        N RLSL
Sbjct: 289 LFKPGSTDFLGDPKISAAYPMWLRQIARQAAQIDSCVVVTGHTSRT---GSESVNERLSL 345

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILV 338
            RA S    L+       +  + SG       +   A D  ++ +RR++  V
Sbjct: 346 QRAVSVKSKLVTEAPPLAKKLRESGMGFRENIVGTGADDASDALDRRVEFKV 397


>gi|302124486|gb|ADK93849.1| peptidoglycan associated lipoprotein OprL precursor [Pseudomonas
           aeruginosa]
          Length = 151

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  S + + + GHTD    R     N  L   RA +  
Sbjct: 84  FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 140

Query: 297 QVLMKSGVSED 307
           + L+  GVS  
Sbjct: 141 RYLVLQGVSPP 151


>gi|62317017|ref|YP_222870.1| lipoprotein [Brucella abortus bv. 1 str. 9-941]
 gi|83269011|ref|YP_418302.1| outer membrane protein OprF [Brucella melitensis biovar Abortus
           2308]
 gi|189022284|ref|YP_001932025.1| outer membrane protein OprF [Brucella abortus S19]
 gi|254691499|ref|ZP_05154753.1| outer membrane protein OprF [Brucella abortus bv. 6 str. 870]
 gi|254698304|ref|ZP_05160132.1| outer membrane protein OprF [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731746|ref|ZP_05190324.1| outer membrane protein OprF [Brucella abortus bv. 4 str. 292]
 gi|256256684|ref|ZP_05462220.1| outer membrane protein OprF [Brucella abortus bv. 9 str. C68]
 gi|260544253|ref|ZP_05820074.1| outer membrane protein OprF [Brucella abortus NCTC 8038]
 gi|260757119|ref|ZP_05869467.1| TraQ protein [Brucella abortus bv. 6 str. 870]
 gi|260759511|ref|ZP_05871859.1| TraQ protein [Brucella abortus bv. 4 str. 292]
 gi|260762755|ref|ZP_05875087.1| TraQ protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882929|ref|ZP_05894543.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297250039|ref|ZP_06933740.1| type IV secretion system outer membrane lipoprotein [Brucella
           abortus bv. 5 str. B3196]
 gi|123545549|sp|Q2YJ83|YP57_BRUA2 RecName: Full=Type IV secretion system putative outer membrane
           lipoprotein BAB2_0057; Flags: Precursor
 gi|148841383|sp|P0C536|YN58_BRUAB RecName: Full=Type IV secretion system putative outer membrane
           lipoprotein BruAb2_0058; Flags: Precursor
 gi|8163895|gb|AAF73905.1|AF226278_12 unknown [Brucella abortus]
 gi|62197210|gb|AAX75509.1| lipoprotein, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939285|emb|CAJ12223.1| outer membrane protein OprF [Brucella melitensis biovar Abortus
           2308]
 gi|189020858|gb|ACD73579.1| outer membrane protein OprF [Brucella abortus S19]
 gi|260097524|gb|EEW81398.1| outer membrane protein OprF [Brucella abortus NCTC 8038]
 gi|260669829|gb|EEX56769.1| TraQ protein [Brucella abortus bv. 4 str. 292]
 gi|260673176|gb|EEX59997.1| TraQ protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677227|gb|EEX64048.1| TraQ protein [Brucella abortus bv. 6 str. 870]
 gi|260872457|gb|EEX79526.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297173908|gb|EFH33272.1| type IV secretion system outer membrane lipoprotein [Brucella
           abortus bv. 5 str. B3196]
          Length = 172

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLD 290
           ++  +F  +S+         + ++  +L    + I++RG TD + P         +++  
Sbjct: 73  QDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARV 120

Query: 291 RAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           RA + Y  L+  GV   RI    + +  +A +       P    NRR+DI +  +
Sbjct: 121 RALAIYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|116748202|ref|YP_844889.1| OmpA/MotB domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697266|gb|ABK16454.1| OmpA/MotB domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 189

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +D  S +       +L +    L   +   +++ GH D    R     N  L   RA SA
Sbjct: 87  YDYDSYVLTEPAKRILDEKISFLKRYARVRVTVEGHCDE---RGTTEYNLALGERRANSA 143

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            Q +  SG+S   ++ +S +   R       +   + NRR
Sbjct: 144 LQYIRNSGLSIQNLTSVS-YGKERPAAMGHDEASWAKNRR 182


>gi|189466076|ref|ZP_03014861.1| hypothetical protein BACINT_02446 [Bacteroides intestinalis DSM
           17393]
 gi|189434340|gb|EDV03325.1| hypothetical protein BACINT_02446 [Bacteroides intestinalis DSM
           17393]
          Length = 372

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F+ +SS+        +  +   L  ++   +SI G+ DA         N RLS +R
Sbjct: 271 ENIFFNINSSVIRSSEESKIANLVAFLQKNADVKVSICGYADAG--TGTTAINLRLSKER 328

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           A +  + L   G++ DRI  +          +++  N    R+ I + +
Sbjct: 329 ALAVEKALKAKGIAADRIM-VDFKGDKVQPFSTNNEN----RVAICITE 372


>gi|303231313|ref|ZP_07318049.1| OmpA family protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514043|gb|EFL56049.1| OmpA family protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 339

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  NI      LS  R     Q L+ +GV  +R+  I+     +    +   N  +
Sbjct: 275 TDANPQYNIG-----LSERRVQDVAQYLVNNGVDANRLIGIA-NGDAKPVATNATANGKA 328

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 329 ENRRVDVFIHR 339


>gi|262173884|ref|ZP_06041561.1| outer membrane protein [Vibrio mimicus MB-451]
 gi|261891242|gb|EEY37229.1| outer membrane protein [Vibrio mimicus MB-451]
          Length = 189

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S   I + GH D +      + N  LS  RA +  + L  +    +RI +  GF     
Sbjct: 111 DSQYKIVVEGHADQT---GNPKYNQALSERRAGAVTRYLRDTLKLGNRIVE-KGFGESAP 166

Query: 321 K--IASDPMNSANRRIDILVEDR 341
              +  +     NRR+ + ++ +
Sbjct: 167 VCTVQENAQTGCNRRVVLTIQPQ 189


>gi|258620793|ref|ZP_05715828.1| outer membrane protein [Vibrio mimicus VM573]
 gi|258586991|gb|EEW11705.1| outer membrane protein [Vibrio mimicus VM573]
          Length = 173

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S   I + GH D +      + N  LS  RA +  + L  +    +RI +  GF     
Sbjct: 95  DSQYKIVVEGHADQT---GNPKYNQALSERRAGAVTRYLRDTLKLGNRIVE-KGFGESAP 150

Query: 321 K--IASDPMNSANRRIDILVEDR 341
              +  +     NRR+ + ++ +
Sbjct: 151 VCTVQENAQTGCNRRVVLTIQPQ 173


>gi|119470188|ref|ZP_01612954.1| Outer membrane protein [Alteromonadales bacterium TW-7]
 gi|119446609|gb|EAW27883.1| Outer membrane protein [Alteromonadales bacterium TW-7]
          Length = 284

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 227 SIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284
            I D  N+   F   +    P+  V L +  +++     + I + GHTD+         N
Sbjct: 144 QITDLLNSDNQFAFKAFEITPKYAVRLAQAADLVKELESISILLVGHTDSM---GEMASN 200

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVED 340
           + L+L RA +    L+  GV    I+ ++     +       +D +  ++RR++ +V D
Sbjct: 201 YELALKRAETVKHWLVVYGVPVQSITTLT-QGSLKPYSDEPQTDSVRHSDRRVEAIVLD 258


>gi|29347852|ref|NP_811355.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572429|ref|ZP_04849831.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298387858|ref|ZP_06997408.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|29339754|gb|AAO77549.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837844|gb|EES65933.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|298259463|gb|EFI02337.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 364

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
           + +   +    F  +S+    +    +  + E L ++    + + G+ D +      + N
Sbjct: 256 VVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVTGYADVN--TGNPKIN 313

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             LS  RA +    L   G++ DRI  +                    R+ I +
Sbjct: 314 KSLSEKRAGNVADALKAKGITTDRIM-VDSKGDTVQPYK----APEENRVSICI 362


>gi|16127077|ref|NP_421641.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|221235874|ref|YP_002518311.1| outer membrane protein A [Caulobacter crescentus NA1000]
 gi|13424457|gb|AAK24809.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|220965047|gb|ACL96403.1| outer membrane protein A [Caulobacter crescentus NA1000]
          Length = 191

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S++      +VL          +   I + GH D          N  LS  RA + 
Sbjct: 89  FPFDSAVLDESGQIVLVAAANYAKSGNATRIVVVGHADT---AGPDAYNIGLSERRAKAT 145

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              L+  G+S   I  +         +A+        NRR+ I
Sbjct: 146 ADTLVNLGISASTI-AVDWKGESAPAVATGDGVSEPLNRRVTI 187


>gi|194295640|gb|ACF40847.1| outer membrane protein [Riemerella anatipestifer]
          Length = 270

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ + +   PE+   L +  EV+   +     + GH D    +  A  N +LS +RA S
Sbjct: 189 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHAD---VKGNANYNLKLSRERAAS 245

Query: 295 AYQVLMKSGVSEDRISK 311
               L   GV+  ++  
Sbjct: 246 VVVALEARGVNPSQLKS 262


>gi|30314430|gb|AAP15424.1| outer membrane lipoprotein precursor [Burkholderia cepacia]
          Length = 150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|71908258|ref|YP_285845.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847879|gb|AAZ47375.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 225

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S+   P     L ++   L  +   I+I G TD +        N  L+L RA +  
Sbjct: 118 FGLGSAKLSPAAHTSLNEVMTALLSA-RQITIIGRTDNT---GPLAFNESLALARALAVR 173

Query: 297 QVLMKSGVSEDRI---SKISGFAHHRLKIASDPMNSA--NRRIDIL 337
             L+K      R+     +          A+D +     NRR++++
Sbjct: 174 DHLIKKY---PRLMPTLSVKARGACCFIAANDTLAGRTQNRRVELV 216


>gi|332829521|gb|EGK02170.1| hypothetical protein HMPREF9455_01804 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 382

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 17/172 (9%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
            L K   K  +   P   +     +  ++ L        S L   +A+     V+ + T+
Sbjct: 207 KLSKGGFKIVDAADPAELQRLNNQINDQRALLGNKDSEISRLKTELANKPEPQVIVQETK 266

Query: 222 TGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275
                 I +Q    M     F   S+       + +      L  +    + + G+ D S
Sbjct: 267 E-----IKEQTEVLMNAVVVFRIGSAKLEQNQDINIFNAARYLKDNPSVNVVVTGYADKS 321

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRI-SKISGFAHHRLKIASD 325
                A  N RLS  RA +  +VL+    ++  RI +K SG         +D
Sbjct: 322 --TGTAAINQRLSEQRAEAVAKVLIDKYDIAPSRITTKASG--DKEQLFPTD 369


>gi|304320152|ref|YP_003853795.1| OmpA family protein [Parvularcula bermudensis HTCC2503]
 gi|303299055|gb|ADM08654.1| OmpA family protein [Parvularcula bermudensis HTCC2503]
          Length = 397

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S        ++    E    +    ++++G+TD       A  N  LS  RA   
Sbjct: 295 FDYDKSNLTDAANTLIAARAEEAIDADVASVTVQGNTDT---AGSASYNQALSARRAKVV 351

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              L+ +GV +  I+ +           +        NRR ++
Sbjct: 352 SDALVANGVDQSAIT-VEALGESNPAKPTGDGVREPLNRRTEV 393


>gi|30314438|gb|AAP15428.1| outer membrane lipoprotein precursor [Burkholderia cepacia]
 gi|30314440|gb|AAP15429.1| outer membrane lipoprotein precursor [Burkholderia stabilis]
 gi|30314446|gb|AAP15432.1| outer membrane lipoprotein precursor [Burkholderia vietnamiensis]
          Length = 150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|59713902|ref|YP_206677.1| hypothetical protein VF_A0719 [Vibrio fischeri ES114]
 gi|59482150|gb|AAW87789.1| hypothetical protein VF_A0719 [Vibrio fischeri ES114]
          Length = 1613

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           +S+    +  + + K  +LEK   KE+  F    + + +  +   K   D AK++S    
Sbjct: 561 DSIGSMYDFYQLVDKQGELEKQSTKEQENF-DGATTDYLQKIVMVKAEADWAKQLSDATK 619

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST- 263
            L  D   +     T  +  +I I  + N+     + +    +   V +KI E+L     
Sbjct: 620 VLNNDGKEQIARIITQGSRAIIHINFKFNSSELPNTGTTLRSDIDKVCEKIAELLKTHPD 679

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM----KSGVSEDRISKISGFAHHR 319
             I I GH  A       + N  ++ DRA    Q ++    +     +RI  +S   + +
Sbjct: 680 YRIQIDGH--AGRI-GSDKANKTIAEDRAKQVEQAILDKAKEDNTLPERIITLS-HGNTQ 735

Query: 320 LKIA-----------SDPMNSANRRIDILVED 340
              A            D   + +RR++I +  
Sbjct: 736 PISAGNAKVDMSETGDDSALAEDRRVEISLLP 767


>gi|313149586|ref|ZP_07811779.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138353|gb|EFR55713.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 395

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTP------------------ 235
            A+ +   +S +   N+ + +         +   ++D +N P                  
Sbjct: 233 FARPMPQIISEIELANMRRQMNEMAAANQSLQQQLVDAQNQPVAEVAEQVVVTDANIAPR 292

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P   + L  +   +    +   ++ G+ D++        N  LS  RA
Sbjct: 293 TVFFTIGSSELSPREEMNLSYLAAKMKEFPDTQYTVYGYADSATGTPAF--NKELSQKRA 350

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +    L+K  GV   R+   +G  
Sbjct: 351 QAVVNALVKKYGVDSSRLKVDAGGG 375


>gi|269963500|ref|ZP_06177826.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831797|gb|EEZ85930.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 91

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I G++D +        N +L+  RA +        G++ DR++ + G        +++
Sbjct: 9   VEINGYSDTT---GSEAYNQQLTEKRAQAVADHFQAEGIAADRMT-VKGMGEANPVASNE 64

Query: 326 P--MNSANRRIDILV 338
                  NRR++++V
Sbjct: 65  TREGREENRRVEVVV 79


>gi|254418180|ref|ZP_05031904.1| peptidoglycan-associated lipoprotein, putative [Brevundimonas sp.
           BAL3]
 gi|196184357|gb|EDX79333.1| peptidoglycan-associated lipoprotein, putative [Brevundimonas sp.
           BAL3]
          Length = 184

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S     E +  L    + L       + I G+ D    R     N  L   R
Sbjct: 74  DRIYFDLDSYDVRSEAMPRLDAQAQWLQRYPQVTVRIEGNADE---RGTREYNLALGARR 130

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           A +    L+  GV   RI  IS +   R     +S+   + NR
Sbjct: 131 AEAVRTYLINRGVPAGRIDTIS-YGKERPIAEGSSEDSWARNR 172


>gi|167616252|ref|ZP_02384887.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           thailandensis Bt4]
 gi|257142822|ref|ZP_05591084.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           thailandensis E264]
          Length = 267

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +  + L
Sbjct: 159 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTNTYNRQLSLARAEAIREYL 215

Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
              G+  + I     G A        D  ++        +RR+ I
Sbjct: 216 TTRGLPGNLIVAQGLGKADPVSNGCPDGHSAEAIACLAPDRRVRI 260


>gi|30314416|gb|AAP15417.1| outer membrane lipoprotein precursor [Burkholderia stabilis]
          Length = 150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 48  FDFDSYSVKDDYQSLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 104

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + +   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 105 RRAMALPGVNDSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 147


>gi|25298554|pir||E84968 outer membrane protein A precursor [imported] - Buchnera sp.
           (strain APS)
          Length = 349

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 18/118 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  +S+   P +   L K+ + +         I + GH D     +      +LS DRAY
Sbjct: 233 FPFNSTELKPSSYDKLNKLDDDIKDMQLKNVSIVLLGHADK--IGSDEYXQ-KLSEDRAY 289

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVED 340
           S    L   G S D+I+ + G             +  N           RR++I V  
Sbjct: 290 SIKNYLASRGFSRDKIT-VKGMGKLYPLTNQVCRDVVNKPLLISCLAPDRRVEIEVLS 346


>gi|296410002|gb|ADH15777.1| OmpP6 [Haemophilus haemolyticus]
          Length = 144

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
           T  G  +S +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 30  TFGGYSVSDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAYLNATPAAKVLVEGNTDE--- 86

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           R     N  L   RA +    L   GV   ++  +S +   +  +    +   S NRR
Sbjct: 87  RGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNRR 143


>gi|163866750|gb|ABY47335.1| putative outer membrane protein [Aeromonas hydrophila]
          Length = 339

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 219 LFAFGKDTLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 275

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  I G         +
Sbjct: 276 RTVANFLVSKGMAASKV-AIEGRGEANPVTGT 306


>gi|59711570|ref|YP_204346.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           fischeri ES114]
 gi|197335447|ref|YP_002155724.1| peptidoglycan-associated lipoprotein [Vibrio fischeri MJ11]
 gi|59479671|gb|AAW85458.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio
           fischeri ES114]
 gi|197316937|gb|ACH66384.1| peptidoglycan-associated lipoprotein [Vibrio fischeri MJ11]
          Length = 188

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           +E   A + +       +  ++ LS + AD  +                + +  T  F  
Sbjct: 35  QESTNAAETQTTNGAEGQTDTAVLSSIEADEAMNEAEVRAQAE----QELRKVQTVYFAF 90

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            +S    E   +L      L+      +++ GH D    R     N  L   RA +  + 
Sbjct: 91  DNSTISSEYEDMLAAHAAFLSADPSIKVTVEGHADE---RGTPEYNIALGERRAKAVSKY 147

Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           L   GVS D+IS +S +   +  +   +    + NRR
Sbjct: 148 LQALGVSADQISIVS-YGEEKPLVLGQTAEDYAKNRR 183


>gi|152990958|ref|YP_001356680.1| peptidoglycan-associated lipoprotein [Nitratiruptor sp. SB155-2]
 gi|151422819|dbj|BAF70323.1| peptidoglycan-associated lipoprotein [Nitratiruptor sp. SB155-2]
          Length = 182

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIARDN 284
           I  Q     FD       P+    ++   ++          I + G+ D          N
Sbjct: 69  IEAQSKKIYFDFDKYNIRPDQQPRVEFDAKLFNSDEAKPFNIKVEGNCDEW---GTDEYN 125

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
           + L L RA S    L   GV++DR++ IS +               + NRR++
Sbjct: 126 YALGLKRAKSVRDALAARGVAKDRMTLIS-YGESNPVCTEHTKECWAKNRRVE 177


>gi|53715321|ref|YP_101313.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
 gi|60683254|ref|YP_213398.1| putative major outer membrane protein [Bacteroides fragilis NCTC
           9343]
 gi|253567211|ref|ZP_04844661.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5]
 gi|265767807|ref|ZP_06095339.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16]
 gi|13446379|gb|AAK20932.1| major outer membrane protein OmpA [Bacteroides fragilis]
 gi|52218186|dbj|BAD50779.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46]
 gi|60494688|emb|CAH09489.1| putative major outer membrane protein [Bacteroides fragilis NCTC
           9343]
 gi|251944042|gb|EES84561.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5]
 gi|263252479|gb|EEZ24007.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16]
 gi|301164773|emb|CBW24332.1| putative major outer membrane protein [Bacteroides fragilis 638R]
          Length = 395

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 195 LAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTP------------------ 235
            A+ +   +S +   N+ + +         +   ++D +N P                  
Sbjct: 233 FARPMPQIISEIELANMRRQMNDMAAANQSLQQQLVDAQNQPVAEVAEQVVVTDANIAPR 292

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P   + L  +   +    +   ++ G+ D++        N  LS  RA
Sbjct: 293 TVFFTIGSSELSPREEMNLSYLAAKMKEFPDTQYTVYGYADSATGTPAF--NKELSQKRA 350

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +    L+K  GV   R+   +G  
Sbjct: 351 QAVVNALVKKYGVDSSRLKVDAGGG 375


>gi|255011749|ref|ZP_05283875.1| putative major outer membrane protein [Bacteroides fragilis 3_1_12]
          Length = 390

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTP------------------ 235
            A+ +   +S +   N+ + +         +   ++D +N P                  
Sbjct: 228 FARPMPQIISEIELANMRRQMNEMAAANQSLQQQLVDAQNQPVAEVAEQVVVTDANIAPR 287

Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P   + L  +   +    +   ++ G+ D++        N  LS  RA
Sbjct: 288 TVFFTIGSSELSPREEMNLSYLAAKMKEFPDTQYTVYGYADSATGTPAF--NKELSQKRA 345

Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316
            +    L+K  GV   R+   +G  
Sbjct: 346 QAVVNALVKKYGVDSSRLKVDAGGG 370


>gi|302345879|ref|YP_003814232.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
 gi|302149522|gb|ADK95784.1| OmpA family protein [Prevotella melaninogenica ATCC 25845]
          Length = 387

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           GK   K +   ++IN +    L  L+     A +   RL+               + +  
Sbjct: 223 GKGTWKKSPDMEAINTQHQAALDALNARLQDAEEENTRLR---------------NELAN 267

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHT 272
               ET    +   ++    +  F+ + S    +  +V +Q + +    +   + + G+ 
Sbjct: 268 QKPVETVSESVK-QLVTTPVSVFFEINQSTIASQKDLVNVQALAKYAKDNNNNLLVTGYA 326

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           D++     A  N +LS  RA      L+K G+  ++I+ + G              S NR
Sbjct: 327 DSA--TGSADYNQKLSERRATVVANELVKMGIENNKITTV-GKGGVETLSPI----SFNR 379

Query: 333 R 333
           R
Sbjct: 380 R 380


>gi|119513344|ref|ZP_01632380.1| chemotaxis protein MotB, putative [Nodularia spumigena CCY9414]
 gi|119462009|gb|EAW43010.1| chemotaxis protein MotB, putative [Nodularia spumigena CCY9414]
          Length = 216

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             +D+ K++   +  +V +     +  +       ISI   + + +F + S+   PE   
Sbjct: 48  AQKDVPKRL--IIGNVVGEMKSNNINVKVNPETGDISI---QESILFAQGSNELKPEGKA 102

Query: 251 VLQKIGEVLAHS-------TEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
            L +   V +            IS   I GHT +       + N  LSL R+ S Y+ 
Sbjct: 103 FLSRFIPVYSGVIFSKEEFENEISRVVIEGHTSSE---GDEKINLELSLMRSLSVYKY 157


>gi|325954512|ref|YP_004238172.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
 gi|323437130|gb|ADX67594.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922]
          Length = 436

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 72/202 (35%), Gaps = 7/202 (3%)

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
           N   ++   +  +  + +   + +           +   L P S    +   R + +   
Sbjct: 233 NDIHADWVADDTSLLANRVSAIEEMLKDSDGDGVADYLDLEPNSAPGAVVDTRGRTIDHN 292

Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-RNTPMFDKSSSIPLPETIVVLQK 254
              I   +   + +N           + +L  +I+       FD +   P   ++  ++ 
Sbjct: 293 GNGIPDDIEEYIKNNQGSNTTTVLADSDLLEQLINSGIINVYFDYNVDQPYEASVGGIKF 352

Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           + E L  +  V + + G+ D  P  +    N  LS  RA +  ++L++ G + + ++ + 
Sbjct: 353 VSEYLKRNPNVQMDVIGYAD--PVGSDGF-NKNLSQRRAENVKRILVQQGANANNLN-VV 408

Query: 314 GFAHHRLK-IASDPMNSANRRI 334
                +    ++   +   RR+
Sbjct: 409 AMGEDKSFQNSTVSAHQLARRV 430


>gi|189461675|ref|ZP_03010460.1| hypothetical protein BACCOP_02339 [Bacteroides coprocola DSM 17136]
 gi|189431647|gb|EDV00632.1| hypothetical protein BACCOP_02339 [Bacteroides coprocola DSM 17136]
          Length = 364

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               F  +SS         ++K+ E +  H+   ++I G+ D       A  N RLS  R
Sbjct: 263 ENVFFALNSSAIRSGEKQKIEKLAEFMKNHAECKVTICGYADKQ--TGNADINMRLSKKR 320

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           A +    L + G+   RI+ +          ++        R+ I +
Sbjct: 321 AENVATQLKEMGIDSQRIT-VDYKGDTVQPFST----PEENRVSICI 362


>gi|320355393|ref|YP_004196732.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320123895|gb|ADW19441.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 201

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323
            + I G+TD    R     N  L   RA SA   L++ G+ E RI  +S +   R     
Sbjct: 129 RVLIEGNTDN---RGTNEYNLALGERRAMSAKTYLIEFGIEESRIRTVS-YGEERPLFNG 184

Query: 324 -SDPMNSANRRIDILVE 339
            S+   + NRR D ++E
Sbjct: 185 GSEDDYAHNRRDDFILE 201


>gi|163786268|ref|ZP_02180716.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
 gi|159878128|gb|EDP72184.1| outer membrane protein, peptidoglycan-associated lipoprotein
           [Flavobacteriales bacterium ALC-1]
          Length = 684

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 19/126 (15%)

Query: 228 IIDQRNTPMFDKSS-------SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279
           I+++     F+               ++  +L ++ + +    +  + I  HTD+   R 
Sbjct: 560 IVEKEGKLFFELEPIYFDFEMWDIREDSKKILDQLVKKMERYPDIHLKISSHTDS---RG 616

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL------KIASDPMNSANRR 333
             R N  LS  RA S    +   G    R  +  GF              +D  +  NRR
Sbjct: 617 TVRYNQILSEKRAESTRNYIALIGYINARRLQFKGFGELSPIVECPMLNCTDEEHQLNRR 676

Query: 334 --IDIL 337
              +I+
Sbjct: 677 SEFEII 682


>gi|257125830|ref|YP_003163944.1| Outer membrane protein and related peptidoglycan- associated
           (lipo)protein-like protein [Leptotrichia buccalis
           C-1013-b]
 gi|257049769|gb|ACV38953.1| Outer membrane protein and related peptidoglycan- associated
           (lipo)protein-like protein [Leptotrichia buccalis
           C-1013-b]
          Length = 254

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 277 FRNIARDNWR-LSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NR 332
           + +   +N   LSL RA    + L ++G+ +D +I+K+ G         +D +     NR
Sbjct: 169 YADKTENNKNKLSLLRAEKMSEFLKQNGLRKDIKITKMIGKGSENPIDTNDTVEGRYNNR 228

Query: 333 RIDILVEDRQ 342
           R++IL+++ +
Sbjct: 229 RVEILLKNGK 238


>gi|304395571|ref|ZP_07377454.1| OmpA/MotB domain protein [Pantoea sp. aB]
 gi|304356865|gb|EFM21229.1| OmpA/MotB domain protein [Pantoea sp. aB]
          Length = 235

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 29/218 (13%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
              ++++  +     +DL   +     +          +  ++ K +    ++    L  
Sbjct: 8   QTQKNTQDNEHWVSMSDLMAGLMMVFMFISIAYMHYVRIEKEKIKEVAVAYEQAQQQLYN 67

Query: 206 LVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----V 258
            +     K +     E  +  + +         +F   SS   P+   +L         V
Sbjct: 68  ALEIEFSKDLPSWDAEIDKQTLEVRFKSPD--VLFGLGSSELKPKFKEILNDFFPRYLRV 125

Query: 259 LAHSTEVI---SIRGHTD-----ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-- 308
           L    + I    I GHT      A+       +N  LS  R  +  Q +     SE    
Sbjct: 126 LDQYKQHITEVRIEGHTSTDWTGAANQDVAYFNNMELSQGRTRAVLQYVYSLKESETHQK 185

Query: 309 ----ISKISGFAHHRLKI----ASDPMNSANRRIDILV 338
                    G++     +      DP  S  RR+   V
Sbjct: 186 WVKSKFAAVGYSSSHPILDAAEKEDPNRS--RRVTFKV 221


>gi|162450138|ref|YP_001612505.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161160720|emb|CAN92025.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 222

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHST--EVIS--IRGHTDASPFRNIARDNWRLS 288
           F+ +S +      P+    LQKI EV+A ++    I+  I GHTD       A  N  LS
Sbjct: 99  FETNSDVIRAPEVPKLEASLQKISEVVAKTSELGKITLFIVGHTDTV---GSAEHNLALS 155

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338
             RA +        GV         G       + +        NRR+D ++
Sbjct: 156 RKRARAIAAWFKGRGVKLS--IAFEGLGESAPLVKTADQVDEPRNRRVDYIL 205


>gi|88811687|ref|ZP_01126941.1| hypothetical protein NB231_04760 [Nitrococcus mobilis Nb-231]
 gi|88791078|gb|EAR22191.1| hypothetical protein NB231_04760 [Nitrococcus mobilis Nb-231]
          Length = 237

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 236 MFDKSSSIPLPETIVVLQK-------IGEVLAHSTEVISIRGHTDASPFRNIARD----- 283
           +F+  S+   P    +L+        I +    S + + I GHT ++  + +        
Sbjct: 99  LFEVGSAEIRPRFKDILEDFFPRYLGILKGFKDSIDEVRIEGHTSSTWNQRVTDTKAYFL 158

Query: 284 NWRLSLDRAYS----AYQVLMKSGVSE--DRISKISGFAHHRLKIASD--PMNSANRRID 335
           N  LS  R  S     Y++    G      R     GF+  R  +  D     + +RR+ 
Sbjct: 159 NMELSQGRTRSVLQHVYRMPSIRGDQPWVQRQFAAVGFSSSRPILRPDGKEDRAHSRRVT 218


>gi|318057618|ref|ZP_07976341.1| secreted protein [Streptomyces sp. SA3_actG]
          Length = 196

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 19/189 (10%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVADN 210
                  D   ++        PP   +      R      LA      I S +  L  + 
Sbjct: 14  PGGVAGADDGPTVPPGSVTTSPPPDVDSSSPGLRLADGAQLASAKVLDIKSVVEDLGGEE 73

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIR 269
             +    +             +   +FDK      P     ++ IGE         + + 
Sbjct: 74  RREDTNTDVK--------FALQAEVLFDKDKFALDPSGRARIKAIGEEAKKQRARTVRVF 125

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           G TD             LS  RA   +  L +  +  +   ++ G++       +  +  
Sbjct: 126 GFTDNL---GSYAHGKTLSKRRADIVHDELAQY-LGPEVTFEVRGYSEDYPIADNTTEEG 181

Query: 328 NSANRRIDI 336
              NRR+++
Sbjct: 182 RRKNRRVEV 190


>gi|330830630|ref|YP_004393582.1| major outer membrane protein OmpAI [Aeromonas veronii B565]
 gi|328805766|gb|AEB50965.1| Major outer membrane protein OmpAI [Aeromonas veronii B565]
          Length = 339

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F        PE +  L  + + +           + G+TD     + A  N +LS  RA
Sbjct: 219 LFAFGKDTLKPEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDAY-NQKLSEARA 275

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  I G         +
Sbjct: 276 RTVANFLVSKGMAASKV-AIEGRGEANPVTGT 306


>gi|282865311|ref|ZP_06274363.1| OmpA/MotB domain protein [Streptomyces sp. ACTE]
 gi|282559784|gb|EFB65334.1| OmpA/MotB domain protein [Streptomyces sp. ACTE]
          Length = 213

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+    +    +  I  E+     + + + G TD     +   D   LS +RA +
Sbjct: 103 LFGKDSAKLSSDANSRINAIAAEIKNQDAKKVRVFGFTDNL-GSSEHGDV--LSKERAEA 159

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + VL  S        +I G+         +S+     NRR+++  +  +G
Sbjct: 160 VHNVLDASLAGTGITFEIRGYGEQYPIADNSSEEGRKKNRRVEVSFQRTEG 210


>gi|227823307|ref|YP_002827279.1| putative outer membrane lipoprotein Omp16-like protein precursor
           [Sinorhizobium fredii NGR234]
 gi|227342308|gb|ACP26526.1| putative outer membrane lipoprotein Omp16-like protein precursor
           [Sinorhizobium fredii NGR234]
          Length = 176

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + LA      I+I GH D    R     N  L   R
Sbjct: 67  DRIFFDTDSSSIRADAQATLARQAQWLAKYPNYAITIEGHADE---RGTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +  + L   GV  +R+  IS +   +     D ++  S NRR
Sbjct: 124 AAATREYLAGQGVPANRMRTIS-YGKEKPVAVCDDISCWSQNRR 166


>gi|86361201|ref|YP_473088.1| outer membrane lipoprotein [Rhizobium etli CFN 42]
 gi|86285303|gb|ABC94361.1| probable outer membrane lipoprotein [Rhizobium etli CFN 42]
          Length = 178

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L  +   ++ ++G  D S      +    LS  RA
Sbjct: 68  RIYFKQDSAALDSVAMATLDNQAAWLNKNPTWLLKLQGFADDSGSAAQMQT---LSQKRA 124

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334
            +A   L   GV   R+    G+ + R  +      S    NRR+
Sbjct: 125 DAAMAYLTSKGVDPKRMWA-KGYGNDRE-VRDCTERSCKVQNRRV 167


>gi|325281084|ref|YP_004253626.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312893|gb|ADY33446.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 367

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 186 MKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQ-----RNTPMFD 238
           + +K R  +  ++I    T+  +  +  V   + + T+      +ID      R    F 
Sbjct: 214 LNKKHRKVEAPREIIFEETVPVVTKEEPVSQPVLQETKQ----DLIDSAALTARQDIFFA 269

Query: 239 KSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
            +SS+ L      +  +   +  H+   + I G+ D        R N  LS  RA     
Sbjct: 270 LNSSVILASETAKIDSLVAFMKTHTETQVVITGYADVQ--TGNPRYNKVLSQRRAEQVAV 327

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +L  +G+S +RI+ +             P+   N R+ I +  ++
Sbjct: 328 LLTVNGISRERIT-VFAKGDTEQPF---PVMEQN-RVAICLIGKK 367


>gi|304411391|ref|ZP_07393005.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307305287|ref|ZP_07585035.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304350246|gb|EFM14650.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306911590|gb|EFN42015.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 276

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              ++A   + ++    ERS  N +D S      + + + +            L   +  
Sbjct: 19  VASVSARVSLQNQAQGQERSLDNDVDASGMAMDGEYANEDEQPEALIGLGGGALVGALVG 78

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                       +L   S    D       + ++ + +   L  LS ++  A KR     
Sbjct: 79  GPVGAIIGAFTGTLIGKSVSDTDTLHVQQRQINLQESQ---LSELSVKQQNAEKRASEYA 135

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              +++   LS        +  L      G+ +          F   SS      +  L 
Sbjct: 136 KAQQELDELLS-------AQRQLLSELALGLNVQ---------FRTGSSEVESHFLPQLD 179

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + EV+  S E  + ++G+ D    R     N  LS  R       L+K GV+ +R++  
Sbjct: 180 DVAEVMNLSPELNLELKGYADR---RGDVSYNQALSEQRLLEVRGYLIKQGVAAERMTTQ 236

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDILVED 340
           +  A   L+   D  +   +RR+ + ++ 
Sbjct: 237 AFGALSPLQAEQDRESDVFDRRVTLTLQP 265


>gi|187924373|ref|YP_001896015.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
 gi|187715567|gb|ACD16791.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 240

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 232 RNTPMFDKSS---SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286
           ++  +F       +  LP     L ++   +  S  V  +S+ GHTD          N+ 
Sbjct: 122 QSDALFAFGQSSRASILPGGAAALDQVIARIRQSRGVQSVSVVGHTDRL---GPETVNYP 178

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           LSL RA +  + ++  G+  + I   +G   H
Sbjct: 179 LSLARAQTVREYMIDHGLDGELIHA-TGVGSH 209


>gi|156124986|gb|ABU50810.1| putative antigen [Acinetobacter venetianus]
          Length = 262

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD+S++  + ++   +  I E +  S  T  I++ G  D  P    +  N +LS  RA +
Sbjct: 154 FDRSNANAIEQSSSSVAAIAERIKQSNSTGPITVAGFAD--PLGKFSY-NHQLSAQRANT 210

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK---IASDPMN------SANRRI 334
             ++L+  G+  +RI +I   +   L      +   N      + NRR+
Sbjct: 211 VAKLLVNEGIDVNRI-QIQANSQTDLYQQCAGNKTNNRLVGCLAPNRRV 258


>gi|108761445|ref|YP_635359.1| hypothetical protein MXAN_7246 [Myxococcus xanthus DK 1622]
 gi|108465325|gb|ABF90510.1| hypothetical protein MXAN_7246 [Myxococcus xanthus DK 1622]
          Length = 244

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 21/94 (22%)

Query: 266 ISIRGHTDASPF--------------RNIARDNWRLSLDRAY----SAYQVLMKSGVSED 307
           I + GHTD  PF              R    +N R S  RA     +    L  +G   D
Sbjct: 145 IILEGHTDDRPFLGTSWECGVREGVARYSFENNVRASAARAQEVFFTVRNQLRDAGYERD 204

Query: 308 RISK---ISGFAHHRLKIASDPMNSANRRIDILV 338
                  +SG      +  +D     NRR+ I V
Sbjct: 205 CFDSNFVVSGRGQTAPRPGTDGSEPENRRLVIRV 238


>gi|255263090|ref|ZP_05342432.1| OmpA domain protein [Thalassiobium sp. R2A62]
 gi|255105425|gb|EET48099.1| OmpA domain protein [Thalassiobium sp. R2A62]
          Length = 521

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 18/185 (9%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S   +          +  +    K +   LA  I +    +    + + +        +
Sbjct: 345 RSPEAQRVVRRAGFVDQAGVPTAIKGQGDRLATAILNAGEEVPLTELQRMMRVLGKLERL 404

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281
            ++         F+  S+    ++     ++   L    H  + +   G +DA   R  A
Sbjct: 405 SMTFR-------FEVGSTRLDAQSRSNAARMARDLRAGVHRDQRLIFVGFSDA---RGPA 454

Query: 282 RDNWRLSLDRAYSA-YQVLMKSGVSE--DRISKISGFAHHRLKIASDPM--NSANRRIDI 336
            +N +LS  RA +   +V +  G +E  D   +   F         D       NRR+++
Sbjct: 455 SENRKLSSARAEAVQRRVNVALGETELSDFTLETEAFGEALPMACDDTEWGRQVNRRVEV 514

Query: 337 LVEDR 341
            V  R
Sbjct: 515 WVGPR 519


>gi|124266869|ref|YP_001020873.1| hypothetical protein Mpe_A1676 [Methylibium petroleiphilum PM1]
 gi|124259644|gb|ABM94638.1| hypothetical protein Mpe_A1676 [Methylibium petroleiphilum PM1]
          Length = 217

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 237 FDKSSSIPL--PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD  S+     P+    L +  +            G TDA     IAR       +RA +
Sbjct: 104 FDFGSARVAIPPDVTAALVEDAKNSPLVLLRGRTDGTTDAPTESRIAR-------ERAAA 156

Query: 295 AYQVLMKSGVSEDRISKISGF--AHHRLKIASDPMNSANRRIDI 336
               L+ +GV   RI + +      H    AS      NRR++I
Sbjct: 157 VRDYLVAAGVDPARI-RATYQPAGDHVADNASAGGRGLNRRVEI 199


>gi|228473928|ref|ZP_04058669.1| putative outer membrane protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274442|gb|EEK13283.1| putative outer membrane protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 388

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 90/262 (34%), Gaps = 38/262 (14%)

Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168
           N       + N  +       N             K      ++      +   ++KSI 
Sbjct: 136 NRAKYAANNPNAARYVAGNAPNSAKYVAKSSPNAVKPVANNSNKDISLQKQLDMIDKSIK 195

Query: 169 KEENYF-LPPLSKEKILAMKRKKRLQDLAKKISSTLS--------GLVADNIVKGVLFET 219
              N   L   +   +  +  K +L  + ++  S L           V D     +  + 
Sbjct: 196 DLSNQQKLLAAAVVPLATLNNKDKLDKIQQRTDSILLLSKKQMDHNNVQDQKESSIAVQN 255

Query: 220 TRT----GILISIIDQRNTPM---------------FDKSSSIPLPETIVVLQKIGEVLA 260
            +T    G  + I ++R   +               F  ++ +PLP     + +I  +L 
Sbjct: 256 VKTPEHKGDNLVISEERRRTLEDLLAKYGNKKTPIYFANNAYVPLPHDTEAMDQIVAMLR 315

Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
            + E  I + G+  AS       +N +LS+ R+ S  ++L K G+S  RI      A   
Sbjct: 316 DNPELSILLEGY--ASNVGTAEYNN-QLSMKRSESVARLLQKQGISLQRILT----AFRG 368

Query: 320 LKIASDPMNSANRRIDILVEDR 341
           +  + D   +  RR+DI V  R
Sbjct: 369 IDDSVDKEKA--RRVDISVIIR 388


>gi|300778953|ref|ZP_07088811.1| OmpA/MotB family protein [Chryseobacterium gleum ATCC 35910]
 gi|300504463|gb|EFK35603.1| OmpA/MotB family protein [Chryseobacterium gleum ATCC 35910]
          Length = 443

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 237 FDKSSS-IPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   SS      +   L  +  +L    +  I I G+TD +        N +LS  RA  
Sbjct: 339 FKMGSSTELEAGSQGQLDNLVAILKAFPDAKIKIGGYTDKT---GNEASNVKLSQARADY 395

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDI 336
               L K+GV   ++    G+     K+   ASD   +A+R++ +
Sbjct: 396 IKSALAKAGV-GGQVLGAEGYGSKFAKVDAKASDAERAADRKMSV 439


>gi|119468930|ref|ZP_01611955.1| hypothetical protein ATW7_04182 [Alteromonadales bacterium TW-7]
 gi|119447582|gb|EAW28849.1| hypothetical protein ATW7_04182 [Alteromonadales bacterium TW-7]
          Length = 244

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 72/249 (28%), Gaps = 27/249 (10%)

Query: 94  SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153
            +  I L++    +  +       +  K+  Q     +   +               +  
Sbjct: 2   KKTLIALTLVAGFSAPTFSSASEHSPSKEATQETAIGLGTGAIIGGVVGGPIGAFIGAFA 61

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILA--MKRKKRLQDLAKKISSTLSGLVADNI 211
           G  +  +   +  +++++        K       +     L+   + ++     L    I
Sbjct: 62  GGLIGDAKVADNKLDEQQRALAVMKQKTNDYQHVLNHNNLLEQQLEVLAQQNEQLTQSQI 121

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
              +                     F   SS   P     L ++  +L +     + + G
Sbjct: 122 NNLLAMTVQ----------------FKTGSSTIAPHFAKQLDQLVVLLNNQPQLALDLSG 165

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
             D    R   + N+ LS  R  +    L+K GVS  R+     F        S+ +   
Sbjct: 166 FADQ---RGDEQANFLLSKKRVNAVQSYLIKHGVSHKRL-STQAFGEQHTLANSNTIED- 220

Query: 331 N---RRIDI 336
           N   RR+ +
Sbjct: 221 NFFDRRVTL 229


>gi|6012949|emb|CAB57308.1| putative outer-membrane protein A [Pectobacterium carotovorum]
          Length = 367

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 24/128 (18%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + +    E    L ++   L+        + + G +D        + N  LS
Sbjct: 233 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFSDRL---GSEQYNQALS 289

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------------SAN 331
             RA S    L+  G+  +++S   G    +    S   N                 + +
Sbjct: 290 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVYKQGRAATKAQLIDCLAPD 348

Query: 332 RRIDILVE 339
           RR++I V+
Sbjct: 349 RRVEIEVK 356


>gi|213022384|ref|ZP_03336831.1| hypothetical protein Salmonelentericaenterica_06936 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 62

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              +L   GV   R+  I G         +      + NRR++ILV +
Sbjct: 16  VAALLTSGGVPAGRVH-IVGKGDTVPVADNGSKAGRAKNRRVEILVVE 62


>gi|134095750|ref|YP_001100825.1| putative OmpA family protein [Herminiimonas arsenicoxydans]
 gi|133739653|emb|CAL62704.1| Putative outer membrane protein OmpA [Herminiimonas arsenicoxydans]
          Length = 225

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 237 FDKSSSIPLPETIVVL-QKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  + ++        + QK+  +LA    +  I+I GHTD       +R N  LS  RA 
Sbjct: 112 FAFNKAVLNKAAKQQIDQKVLPILAECKGIDGITITGHTDHL---GASRSNQILSEKRAA 168

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---------NSANRRIDILV 338
           S    L   GVS      + G    +     D            + NRR+ I V
Sbjct: 169 SVAGYLKTKGVSTK--MNVLGAGETQGVKLCDEKLPHGKLIACLAPNRRVLIEV 220


>gi|124005287|ref|ZP_01690128.1| OmpA family protein [Microscilla marina ATCC 23134]
 gi|123989109|gb|EAY28687.1| OmpA family protein [Microscilla marina ATCC 23134]
          Length = 436

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F    S    +    L +    +         +++ G  D+         N +L+  RA 
Sbjct: 34  FAYKQSELSAKAKQKLDQTFARLYRKQVLDYEVTLTGLADSVGNVAA---NHQLANKRAL 90

Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338
           +    L+  GV  D+++ K+ G    R     D     NRR++I++
Sbjct: 91  AVKTYLIAQGVGADKVTVKVLG---ERPANNEDEHR-RNRRVEIVL 132


>gi|126174068|ref|YP_001050217.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155]
 gi|125997273|gb|ABN61348.1| OmpA/MotB domain protein [Shewanella baltica OS155]
          Length = 276

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 24/269 (8%)

Query: 74  KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133
              ++A   + ++    ERS  N +D S      + + + +            L   +  
Sbjct: 19  VASVSARVSLQNQAQGQERSLDNDVDASGMAMDGEYANEDEQPEALIGLGGGALVGALVG 78

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
                       +L   S    D       + S+ + +   L  LS ++  A KR     
Sbjct: 79  GPVGAIIGAFTGTLIGKSVSDTDTLHVQQRQISLQESQ---LSELSVKQQAAEKRASEYA 135

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
              + +   LS        +  L      G+ +          F   SS      +  L 
Sbjct: 136 KAQQDLDELLS-------AQRQLLSELALGLNVQ---------FRTGSSEVESHFLPQLD 179

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + EV+  S E  + ++G+ D    R     N  LS  R       L+  GV+ +R++  
Sbjct: 180 DVAEVMNLSPELNLELKGYADR---RGDVSYNQALSEQRLLEVRGYLIMQGVAAERMTTQ 236

Query: 313 SGFAHHRLKIASDPMNSA-NRRIDILVED 340
           +  A   L+   D  +   +RR+ + ++ 
Sbjct: 237 AFGALSPLQAEQDRESDVFDRRVTLTLQP 265


>gi|330955899|gb|EGH56159.1| OmpA/MotB [Pseudomonas syringae Cit 7]
          Length = 132

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + I GH D          N ++S +RA S   +   SG+  +R+S+  G      + A+D
Sbjct: 2   VLILGHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAAND 57

Query: 326 P--MNSANRRIDILVEDR 341
                + NRR++IL+  +
Sbjct: 58  SLQGRALNRRVEILMTPQ 75


>gi|83717436|ref|YP_439684.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           thailandensis E264]
 gi|83651261|gb|ABC35325.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           thailandensis E264]
          Length = 298

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +  + L
Sbjct: 190 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTNTYNRQLSLARAEAIREYL 246

Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336
              G+  + I     G A        D  ++        +RR+ I
Sbjct: 247 TTRGLPGNLIVAQGLGKADPVSNGCPDGHSAEAIACLAPDRRVRI 291


>gi|332520733|ref|ZP_08397195.1| hypothetical protein LacalDRAFT_1808 [Lacinutrix algicola 5H-3-7-4]
 gi|332044086|gb|EGI80281.1| hypothetical protein LacalDRAFT_1808 [Lacinutrix algicola 5H-3-7-4]
          Length = 234

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 17/119 (14%)

Query: 197 KKISSTLSGLVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           K +   +   +  N+ + +   + E +  G +   +  ++  +F         E    L 
Sbjct: 40  KFVEQDIYNSLELNLKQEIENEVIELSPDGTVKFNLQTKDKELFPSDRYTMTYEFEKTLN 99

Query: 254 KIGE-------VLAHSTE--VISIRGHTDASPFRNIAR-----DNWRLSLDRAYSAYQV 298
           +             +      + I GHTD  P R          N  LS +RA S    
Sbjct: 100 EFTPKYLKIITASNYLNNISEVRIEGHTDTIPPRRSRNRDSYDYNLELSSNRARSVLNY 158


>gi|257095753|ref|YP_003169394.1| peptidoglycan-associated lipoprotein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048277|gb|ACV37465.1| peptidoglycan-associated lipoprotein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 176

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++    + L       + I+G+TD    R     N  L   RA + 
Sbjct: 72  FDFDSYEVKSEYKDLVTAHAKFLTDNRQFKMLIQGNTDE---RGSREYNLALGQKRADAV 128

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            ++L   G  ED++  +S     + K     +   + NRR
Sbjct: 129 RKMLTLLGAREDQLESVS-LGEEKPKNEGHDESAWAQNRR 167


>gi|307294285|ref|ZP_07574129.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
 gi|306880436|gb|EFN11653.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1]
          Length = 358

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   P+   +L   +       +  + + G+ D       A  N  LS  RA +
Sbjct: 251 FFEWDKSDITPDAATILDNAVSAYSNCGSAQVMLAGYADR---SGSASYNVGLSQRRADA 307

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
               +   G+ +  I ++  G A+ R++ A       NRR++I
Sbjct: 308 VKAYVASKGIPDGVITTQAFGEANPRVETADGVRELQNRRVEI 350


>gi|213421509|ref|ZP_03354575.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 34

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADF 40
          KNQ +   +++K++          GSWKI YADF
Sbjct: 2  KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADF 34


>gi|258624773|ref|ZP_05719704.1| outer membrane protein [Vibrio mimicus VM603]
 gi|258582935|gb|EEW07753.1| outer membrane protein [Vibrio mimicus VM603]
          Length = 173

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S   I + GH D +      + N  LS  RA +  + L  +    +RI +  GF     
Sbjct: 95  DSQYKIVVEGHADQT---GNPKYNQALSERRAGAVTRYLRDTLKLGNRIVE-KGFGESTP 150

Query: 321 K--IASDPMNSANRRIDILVEDR 341
              +  +     NRR+ + ++ +
Sbjct: 151 VCTVQENAQTGCNRRVVLTIQPQ 173


>gi|332293191|ref|YP_004431800.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171277|gb|AEE20532.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 236

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 35/231 (15%)

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
               +   S+ QQ  + KN+  ++  K KD   S+            F P          
Sbjct: 23  STREVNNDSDIQQVLYEKNNSKKNIPKSKDTQSSSSEVSKTKFTTTSFAPDSLD------ 76

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS---- 242
                L  +  + SS L+  +  +I      + T+    +    + N+ M    SS    
Sbjct: 77  -----LFGIEHETSSMLAEEIQKSIAISDTIDITKDEPALEFEKELNSLMGPSFSSSIFY 131

Query: 243 --------IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR--LSLDR 291
                   I   E +    ++  +L    E  ++I GHTD       ++DN+   L + R
Sbjct: 132 PRYNNTDLILDKELVKYTTELKALLKKHPEKKVTILGHTDNV---GSSKDNFDQGLKMSR 188

Query: 292 AYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339
                  L  + G+   +I+  +          +  ++    N RI+I+V+
Sbjct: 189 --QVKWYLTARRGIPRHKITA-TSRGEEEPIANNKSLSGRQENNRIEIIVD 236


>gi|257454660|ref|ZP_05619916.1| OmpA/MotB [Enhydrobacter aerosaccus SK60]
 gi|257447970|gb|EEV22957.1| OmpA/MotB [Enhydrobacter aerosaccus SK60]
          Length = 404

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +            I E  A   + I I G+TD++     A  N +L+ +RA +  
Sbjct: 289 FATGKAQVAGNAKEKANDILEA-AKQGKKIGISGYTDST---GNAAANEKLAKERAQAVR 344

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDRQG 343
             L+ +GV + ++          L    D   +A      RR+D  + D   
Sbjct: 345 SFLVANGVPQSQL---------ELIKPQDTTGAAGKDQEGRRVDAYIVDDNA 387


>gi|163801589|ref|ZP_02195487.1| hypothetical protein 1103602000597_AND4_09052 [Vibrio sp. AND4]
 gi|159174506|gb|EDP59308.1| hypothetical protein AND4_09052 [Vibrio sp. AND4]
          Length = 1582

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              K +L + S   + +  + + +++++K    +L  L+      ++R    +   KK  
Sbjct: 566 ASGKEALDQYSAFSEQIQNAKEAQETLSKYAENYLSSLTF-----VRRFDNPEHWQKKAE 620

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           +    L  +   +         G+++ +  + N+  F+    +   + I V +K+ ++L+
Sbjct: 621 TVQEALGKEGNAQ---IFADGQGVVVRMNFKFNSAEFENEVQVLHIDYIEVCKKLCQLLS 677

Query: 261 HST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR----------- 308
            +    ++I GH  A P      +N ++S  RA    + ++     E+R           
Sbjct: 678 QNPDYQVAIIGH--AGPI-GTHENNLKISKMRADVVKEAILAKASGEERANLESRLWIEF 734

Query: 309 ------ISKISGFAHHRLKIASDPMNSANRRIDI 336
                 I  I G+       + +   + NRR+++
Sbjct: 735 KGKSQLIDDIDGY-DDVNDRSDNADIAVNRRVEV 767


>gi|311294129|gb|ADP88820.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294135|gb|ADP88823.1| outer membrane protein [Vibrio parahaemolyticus]
          Length = 182

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L +  + I + GHTD          N  LSL RA +A + L K     +RI +   F   
Sbjct: 105 LVNEDKRILVEGHTDDV---GSQAYNKSLSLRRASTASKYLKKDLGLGNRIVE-KAFGES 160

Query: 319 RL--KIASDPMNSANRRIDILV 338
               K+  + ++  NRR+ + +
Sbjct: 161 APICKVNENKLSGCNRRVVLTI 182


>gi|311294121|gb|ADP88816.1| outer membrane protein [Vibrio parahaemolyticus]
          Length = 182

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L +  + I + GHTD          N  LSL RA +A + L K     +RI +   F   
Sbjct: 105 LVNEDKRILVEGHTDDV---GSQAYNKSLSLRRASTASKYLKKDLGLGNRIVE-KAFGES 160

Query: 319 RL--KIASDPMNSANRRIDILV 338
               K+  + ++  NRR+ + +
Sbjct: 161 APICKVNENKLSGCNRRVVLTI 182


>gi|311294119|gb|ADP88815.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294123|gb|ADP88817.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294125|gb|ADP88818.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294127|gb|ADP88819.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294131|gb|ADP88821.1| outer membrane protein [Vibrio parahaemolyticus]
 gi|311294133|gb|ADP88822.1| outer membrane protein [Vibrio parahaemolyticus]
          Length = 182

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           L +  + I + GHTD          N  LSL RA +A + L K     +RI +   F   
Sbjct: 105 LVNEDKRILVEGHTDDV---GSQAYNKSLSLRRASTASKYLKKDLGLGNRIVE-KAFGES 160

Query: 319 RL--KIASDPMNSANRRIDILV 338
               K+  + ++  NRR+ + +
Sbjct: 161 APICKVNENKLSGCNRRVVLTI 182


>gi|302521646|ref|ZP_07273988.1| secreted protein [Streptomyces sp. SPB78]
 gi|302430541|gb|EFL02357.1| secreted protein [Streptomyces sp. SPB78]
          Length = 205

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 19/189 (10%)

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVADN 210
                  D   ++        PP   +      R      LA      I S +  L  + 
Sbjct: 23  PGGVAGADDGPTVPPGSVTTSPPPDVDSSSPGLRLADGAQLASAKVLDIKSVVEDLGGEE 82

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIR 269
             +    +             +   +FDK      P     ++ IGE         + + 
Sbjct: 83  RREDTNTDVK--------FALQAEVLFDKDKFALDPSGRARIKAIGEEAKKQRARTVRVF 134

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327
           G TD             LS  RA   +  L +  +  +   ++ G++       +  +  
Sbjct: 135 GFTDNL---GSYAHGKTLSKRRADIVHDELAQY-LGPEVTFEVRGYSEDYPIADNTTEEG 190

Query: 328 NSANRRIDI 336
              NRR+++
Sbjct: 191 RRKNRRVEV 199


>gi|251733447|emb|CAR82473.1| pal [Bradyrhizobium japonicum]
          Length = 87

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
              +   P+ IV L+K  + L  +     +I GH D    R     N  L   RA S   
Sbjct: 1   SDQTDLTPQAIVTLEKQAQWLQNYRQYSFTIEGHADE---RGTREYNIALGARRAQSVRS 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L   G+  +R+  IS      + + +D
Sbjct: 58  FLASRGIDPNRMRTISYGKERPVAVCND 85


>gi|197337147|ref|YP_002158389.1| OmpA family protein [Vibrio fischeri MJ11]
 gi|197314399|gb|ACH63848.1| OmpA family protein [Vibrio fischeri MJ11]
          Length = 1590

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 34/204 (16%)

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
           N++      G+++ +     +              K   +  + +  +    K+    L+
Sbjct: 555 NNIASLFNHGEEIVEQKKKAEKARGNMAEVASEYLKHIPVWTETQLEINKENKQAFEQLT 614

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
                  +K         G  I ++ +     FDK ++         + +I   L    +
Sbjct: 615 -------IKNKTLFNDDYGSGIEVVFE-----FDKKTAD-TSMVRQGIAEIVSFLEKQPD 661

Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK---ISGFAHHRL 320
           V I I GHT         + N  LS  RA +   +         ++ +   +  F   + 
Sbjct: 662 VHIVIEGHTCQV---GTNQYNMNLSQQRAQNVADLF------PKKLQEKITVIAFGETQP 712

Query: 321 KI--------ASDPMNSANRRIDI 336
            +        + +     NRR+ I
Sbjct: 713 LVEATGREVSSDNLKLKVNRRVKI 736


>gi|119947015|ref|YP_944695.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Psychromonas ingrahamii 37]
 gi|119865619|gb|ABM05096.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Psychromonas ingrahamii 37]
          Length = 220

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            + K   + +  K    +  L       G+  E       I+++D     +FD +     
Sbjct: 45  FQLKITQEQIQNKRVIVIQALQEQFNANGISAEINPETGDITLLDS---VLFDFNKKQLK 101

Query: 246 PETIVVLQKIGEV----------LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            E    L K   V          ++     + I GHT +    ++   N +LSL RA S 
Sbjct: 102 QEGKDFLIKFIPVYSGVIFSEDGISDEINRVIIEGHTSSD--GSLGY-NMQLSLGRANSV 158

Query: 296 YQV 298
           +Q 
Sbjct: 159 FQY 161


>gi|254720692|ref|ZP_05182503.1| hypothetical protein Bru83_14530 [Brucella sp. 83/13]
 gi|265985741|ref|ZP_06098476.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839356|ref|ZP_07472172.1| lipoprotein [Brucella sp. NF 2653]
 gi|264664333|gb|EEZ34594.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405604|gb|EFM61867.1| lipoprotein [Brucella sp. NF 2653]
          Length = 172

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 65/171 (38%), Gaps = 26/171 (15%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           P +S    + +      ++L       L     +   +  ++        +S+   ++  
Sbjct: 23  PTVSGRHRIPINSPAAQEEL------RLQVFPQEPTAQATMWPARPPKQTVSVYFPQDVT 76

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYS 294
           +F  +S+         + ++  +L    + I++RG TD + P         +++  RA +
Sbjct: 77  VFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARTRALA 124

Query: 295 AYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            Y  L+  GV   +I    + +  +A +       P    NRR+DI +  +
Sbjct: 125 IYNWLINQGVPASKITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|256823064|ref|YP_003147027.1| peptidoglycan-associated lipoprotein [Kangiella koreensis DSM
           16069]
 gi|256796603|gb|ACV27259.1| peptidoglycan-associated lipoprotein [Kangiella koreensis DSM
           16069]
          Length = 172

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN 284
            I+ +   N   FD        E + VL+     +  S + + + GH D    R     N
Sbjct: 60  RIAALLDNNVIYFDFDDDSIRSEYVEVLEAHAMYIQSSGKSVVLEGHADE---RGTPEYN 116

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336
             L   RA S  Q++   GVS+  I  IS F        +   ++   NRR++I
Sbjct: 117 LALGERRAKSVAQLMRTYGVSDSNIEVIS-FGEESPANPAHNESAWQENRRVEI 169


>gi|254251341|ref|ZP_04944659.1| Cytochrome c oxidase [Burkholderia dolosa AUO158]
 gi|124893950|gb|EAY67830.1| Cytochrome c oxidase [Burkholderia dolosa AUO158]
          Length = 533

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      +        AH    +++ G TD +     A  N  L+  RA + 
Sbjct: 437 FETGKSTLPADAKAAIAAAADYANAHPDAKLALSGFTDKT---GSADANAELAKQRAQAV 493

Query: 296 YQVLMKSGVSEDRIS-----KISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 494 RDALKAAGVAEDHIVLKKPETITGGADAKAA----------RRVEI 529


>gi|17988380|ref|NP_541013.1| outer membrane protein OprF [Brucella melitensis bv. 1 str. 16M]
 gi|225685925|ref|YP_002733897.1| TraQ protein [Brucella melitensis ATCC 23457]
 gi|256042982|ref|ZP_05445928.1| TraQ protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112034|ref|ZP_05452979.1| TraQ protein [Brucella melitensis bv. 3 str. Ether]
 gi|256261862|ref|ZP_05464394.1| outer membrane protein OprF [Brucella melitensis bv. 2 str. 63/9]
 gi|260564216|ref|ZP_05834701.1| outer membrane protein OprF [Brucella melitensis bv. 1 str. 16M]
 gi|265989419|ref|ZP_06101976.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993480|ref|ZP_06106037.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|81850946|sp|Q8YDY8|YU36_BRUME RecName: Full=Type IV secretion system putative outer membrane
           lipoprotein BMEII0036; Flags: Precursor
 gi|17984159|gb|AAL53277.1| outer membrane protein oprf [Brucella melitensis bv. 1 str. 16M]
 gi|225642030|gb|ACO01943.1| TraQ protein [Brucella melitensis ATCC 23457]
 gi|260151859|gb|EEW86952.1| outer membrane protein OprF [Brucella melitensis bv. 1 str. 16M]
 gi|262764350|gb|EEZ10382.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000088|gb|EEZ12778.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263091339|gb|EEZ15875.1| outer membrane protein OprF [Brucella melitensis bv. 2 str. 63/9]
          Length = 172

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLD 290
           ++  +F  +S+         + ++  +L    + I++RG TD S P         +++  
Sbjct: 73  QDVTVFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNSCPPPGDT----QVARV 120

Query: 291 RAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           RA + Y  L+  GV   RI    + +  +A +       P    NRR+DI +  +
Sbjct: 121 RALAIYNWLINQGVPASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|15966491|ref|NP_386844.1| peptidoglycan-associated lipoprotein precursor [Sinorhizobium
           meliloti 1021]
 gi|307300472|ref|ZP_07580252.1| peptidoglycan-associated lipoprotein [Sinorhizobium meliloti
           BL225C]
 gi|307318337|ref|ZP_07597772.1| peptidoglycan-associated lipoprotein [Sinorhizobium meliloti AK83]
 gi|22653891|sp|Q926C3|OMP16_RHIME RecName: Full=Outer membrane lipoprotein omp16 homolog; Flags:
           Precursor
 gi|15075762|emb|CAC47317.1| Peptidoglycan-associated lipoprotein [Sinorhizobium meliloti 1021]
 gi|306896019|gb|EFN26770.1| peptidoglycan-associated lipoprotein [Sinorhizobium meliloti AK83]
 gi|306904638|gb|EFN35222.1| peptidoglycan-associated lipoprotein [Sinorhizobium meliloti
           BL225C]
          Length = 176

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + LA      I+I GH D    R     N  L   R
Sbjct: 67  DRIFFDTDSTSIRADAQATLDRQAQWLAKYPNYGITIEGHADE---RGTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GV  +R+  IS +   +     D ++  S NRR
Sbjct: 124 AAATRDYLVSRGVPGNRMRTIS-YGKEKPVAVCDDISCWSQNRR 166


>gi|262372083|ref|ZP_06065362.1| small protein A (tmRNA-binding) [Acinetobacter junii SH205]
 gi|262312108|gb|EEY93193.1| small protein A (tmRNA-binding) [Acinetobacter junii SH205]
          Length = 181

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 21/115 (18%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD+S++  +      +  I + +    +T  + + G  D  P    A  N +LS  R  +
Sbjct: 73  FDRSNANAIEHGSDSVTSIAQRIKQSNATGPVIVAGFAD--PLGKFAY-NQQLSSQRVNT 129

Query: 295 AYQVLMKSGVSEDRI-----------SKISGF-AHHRLKIASDPMNSANRRIDIL 337
             ++L   G+  +RI            + +G  A+++L     P    NRR++I+
Sbjct: 130 VAKLLFNEGIDVNRIQIQANSQTDLYQQCAGHKANNQLVNCLAP----NRRVNII 180


>gi|145219968|ref|YP_001130677.1| OmpA/MotB domain-containing protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206132|gb|ABP37175.1| OmpA/MotB domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 152

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD++S         + +    +   S++ + I GH D    R  +  N  L   RA  A 
Sbjct: 53  FDQASIRMDA-AEQLSKNAAWMQEKSSKRVVIEGHCDE---RGTSEYNMALGERRASMAK 108

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           + ++  GV  +R++ +S +   R   A  ++   + NRR
Sbjct: 109 EYMVNLGVQPERMTTVS-YGEERPFAAGSNEEAWALNRR 146


>gi|251733503|emb|CAR82501.1| pal [Ensifer adhaerens]
          Length = 87

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + LA      +++ GH D    R     N  L   RA S   
Sbjct: 1   TDSTSIRADAQQTLDRQAQWLAKYPNYAVTVEGHADE---RGTREYNLALGARRAASTKD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLISRGVPANRLKTISYGKEKPVAVCDD 85


>gi|218659387|ref|ZP_03515317.1| hypothetical conserved membrane protein [Rhizobium etli IE4771]
          Length = 198

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
              F   SS   P+   +LQK+  V+       I I GHTDA      AR N  LS  RA
Sbjct: 106 RVQFAFDSSAIAPKEKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSTLRA 162

Query: 293 YSAYQVL-MKSGVSEDRI 309
               +       +  +R+
Sbjct: 163 REVARFFTEDCQIPRERL 180


>gi|15919973|ref|NP_361033.1| TraQ protein [Plasmid pSB102]
 gi|15722272|emb|CAC79164.1| TraQ protein [Plasmid pSB102]
          Length = 184

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSA 295
           F  +SS   P T   +  +  +L  +   I +RG TD   P     R    ++L+RA +A
Sbjct: 83  FPFNSSAFRP-TQTQVATLLPLLGGNVRQIWVRGRTDGDRPSAADER----VALNRALAA 137

Query: 296 YQVLMKSGVSEDRISK--ISGFAHHRLKIASDPMNSANRRIDILVEDR 341
              L+  GVS  +IS   +S    +     S    + NRR+DI V +R
Sbjct: 138 KNWLVAQGVSPLKISVNYVSA-GDYVADNVSAAGRAQNRRVDIEVFNR 184


>gi|262377779|ref|ZP_06070996.1| small protein A [Acinetobacter lwoffii SH145]
 gi|262307288|gb|EEY88434.1| small protein A [Acinetobacter lwoffii SH145]
          Length = 262

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD+S++  + +    +  I E +  S  T  I++ G  D  P    +  N +LS  RA +
Sbjct: 154 FDRSNANAIEQGSSSVAAIAERIKQSNSTGPITVAGFAD--PLGKFSY-NHQLSAQRANT 210

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK---IASDPMN------SANRRI 334
             ++L+  G+  +RI +I   +   L      +   N      + NRR+
Sbjct: 211 VAKLLVNEGIDVNRI-QIQANSQTDLYQQCAGNKANNRLVGCLAPNRRV 258


>gi|23499825|ref|NP_699265.1| putative lipoprotein [Brucella suis 1330]
 gi|161620148|ref|YP_001594034.1| TraQ protein [Brucella canis ATCC 23365]
 gi|254702492|ref|ZP_05164320.1| TraQ protein [Brucella suis bv. 3 str. 686]
 gi|260568602|ref|ZP_05839071.1| outer membrane protein OprF [Brucella suis bv. 4 str. 40]
 gi|261753065|ref|ZP_05996774.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|81789251|sp|Q9RPX3|YU58_BRUSU RecName: Full=Type IV secretion system putative outer membrane
           lipoprotein BRA0058; Flags: Precursor
 gi|5929877|gb|AAD56622.1|AF141604_12 ORF12 [Brucella suis 1330]
 gi|23463394|gb|AAN33270.1| lipoprotein, putative [Brucella suis 1330]
 gi|161336959|gb|ABX63263.1| TraQ protein [Brucella canis ATCC 23365]
 gi|260155267|gb|EEW90348.1| outer membrane protein OprF [Brucella suis bv. 4 str. 40]
 gi|261742818|gb|EEY30744.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 172

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 26/171 (15%)

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235
           P +S    + +      ++L       L     +   +  ++        +S+   ++  
Sbjct: 23  PTVSGRHRIPINSPAAQEEL------RLQVFPQEPTAQATMWPARPPKQTVSVYFPQDVT 76

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYS 294
           +F  +S+         + ++  +L    + I++RG TD + P         +++  RA +
Sbjct: 77  VFRPTSAQ--------INQLHTLLWPVPKHINVRGLTDNNCPPPGDT----QVARVRALA 124

Query: 295 AYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
            Y  L+  GVS  RI    + +  +A +       P    NRR+DI +  +
Sbjct: 125 IYNWLINQGVSASRITISYAPVKDYASNAPLS---PGRVLNRRVDIEILRK 172


>gi|223038721|ref|ZP_03609014.1| Omp18 [Campylobacter rectus RM3267]
 gi|222880123|gb|EEF15211.1| Omp18 [Campylobacter rectus RM3267]
          Length = 189

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFR 278
             ++ SI  Q  T  FD        +   V+     +   S      + I G+ D     
Sbjct: 70  QQLISSIEGQVQTVYFDFDKFNIKGDMQPVINTNAGLFNQSEAQALSVKIEGNCDEW--- 126

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
                N+ L L RA +A   L+K GV+ DRI  +S +          +   ++ NRR + 
Sbjct: 127 GTDEYNYALGLKRAKAAKDALVKQGVAADRIMVVS-YGESNPVCTDKTKACDAQNRRAEF 185

Query: 337 LVED 340
            V  
Sbjct: 186 KVLP 189


>gi|169836490|ref|ZP_02869678.1| hypothetical protein cdivTM_05195 [candidate division TM7
           single-cell isolate TM7a]
          Length = 349

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F     +P       L+ I  V+        I   GHTD++     A  N +LS+ RA +
Sbjct: 239 FKVDGRVPNEGEAADLRTIAGVINQFADGGSIDFVGHTDST---GSAAYNQKLSVARAQN 295

Query: 295 AYQVLMKSGV 304
             ++L   G+
Sbjct: 296 VARLLRDYGL 305


>gi|188995160|ref|YP_001929412.1| putative OmpA family protein [Porphyromonas gingivalis ATCC 33277]
 gi|188594840|dbj|BAG33815.1| putative OmpA family protein [Porphyromonas gingivalis ATCC 33277]
          Length = 672

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           ++D   +   PE++  L ++  +L  + +  I +  H D    +     N  LS  RA S
Sbjct: 538 LYDFDKATLRPESMKSLDELIRILTDNPDIRIELGSHADR---KGPDAYNLGLSDRRAKS 594

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
               L   G++ DR++   G+     K  +
Sbjct: 595 VVDYLTSRGIAADRLTW-KGYGKSVPKTVT 623


>gi|297202083|ref|ZP_06919480.1| type VI secretion system OmpA/MotB [Streptomyces sviceus ATCC
           29083]
 gi|197714277|gb|EDY58311.1| type VI secretion system OmpA/MotB [Streptomyces sviceus ATCC
           29083]
          Length = 210

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 19/194 (9%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           +     +        T+   +   E +   P L   +   +   K L      I   +  
Sbjct: 26  TPAHADDGDPSYPPGTEPSATAPVEVDPNDPDLKLPEGATLAEPKVLD-----IKQVVED 80

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTE 264
              D   +    +             +   +F K S+    +    +  I  E+   +  
Sbjct: 81  QTGDERREDTNADVK--------FALQAEVLFGKDSAKLNGDARARISAIAAEIKNQNAT 132

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
            I + G TD        R    LS  RA +   VL +         ++ G++        
Sbjct: 133 RIRVFGFTDNLGSYAHGRT---LSRQRANAVQDVLDQELKDSGITYEVRGYSEDFPIASN 189

Query: 323 ASDPMNSANRRIDI 336
           A++     NRR+++
Sbjct: 190 ATEAGRKKNRRVEV 203


>gi|332293116|ref|YP_004431725.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171202|gb|AEE20457.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 429

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           I D      F  +S+ P   ++  +  + + +  ++     + G+ D       A  N R
Sbjct: 320 IEDGYVNVYFQFNSTKPETYSLESINYLIKYMTENSGASAQLVGYADEI---GNASSNQR 376

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRRID 335
           LS  RA     +++ +G+S DR+  ++G         AS P     RR+ 
Sbjct: 377 LSEKRAQMVKDIMVAAGISADRL-SVTGNGEDASVDKASAPARQLVRRVT 425


>gi|325068018|ref|ZP_08126691.1| OmpA/MotB [Actinomyces oris K20]
          Length = 139

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS        VL +I +         +++ GHTD+         N  LS  RA + 
Sbjct: 33  FDVDSSALTDRAKQVLDEIVKRWNGKPPATVTVVGHTDSVA---DDAHNQTLSEQRAKAV 89

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--------SDPMNSANRRIDI 336
              L    V    +   SG        +        ++   +ANR +D+
Sbjct: 90  ADYLTSK-VPSLNVQS-SGKGESEPVASETNADGSVNEAGKAANRHVDV 136


>gi|323945383|gb|EGB41437.1| chemotaxis protein MotB [Escherichia coli H120]
          Length = 127

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           QS      L+  ++                + E        K  +L  K    L +LA  
Sbjct: 21  QSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATS 80

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           I++       +     +  E    G+ + I D +N  MF++ S+  +P 
Sbjct: 81  INTIARDAHMEA---NLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPF 126


>gi|326773952|ref|ZP_08233234.1| OmpA family protein [Actinomyces viscosus C505]
 gi|326636091|gb|EGE36995.1| OmpA family protein [Actinomyces viscosus C505]
          Length = 199

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS        VL +I +         +++ GHTD+         N  LS  RA + 
Sbjct: 93  FDVDSSALTDRAKQVLDEIVKRWNGKPPATVTVVGHTDSVA---DDAHNQTLSEQRAKAV 149

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--------SDPMNSANRRIDI 336
              L    V    +   SG        +        ++   +ANR +D+
Sbjct: 150 ADYLTSK-VPSLNVQS-SGKGESEPVASETNADGSVNEAGKAANRHVDV 196


>gi|160872189|ref|ZP_02062321.1| OmpA/MotB domain protein [Rickettsiella grylli]
 gi|159120988|gb|EDP46326.1| OmpA/MotB domain protein [Rickettsiella grylli]
          Length = 175

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD + S    E    LQ     L    +  I I G+TD    R     N  L   RA S 
Sbjct: 66  FDFNQSFVREEDKPSLQIQAHYLISHPQTKILIVGNTDE---RGSREYNIGLGQRRALSV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR 333
            + L+ +GVS+ +I  +S  A   +    S+   + NRR
Sbjct: 123 ERFLIANGVSKKQILTVSYGAEKPVAFGHSEADYAKNRR 161


>gi|33151318|ref|NP_872671.1| major outer membrane protein [Haemophilus ducreyi 35000HP]
 gi|1872470|gb|AAB49273.1| major outer membrane protein [Haemophilus ducreyi]
 gi|33147538|gb|AAP95060.1| major outer membrane protein [Haemophilus ducreyi 35000HP]
          Length = 403

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEV---LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD + +    E   VL         L  +T  I + G+TD          N +LS  RA
Sbjct: 283 LFDFAKADLKQEAAQVLDATNTEIVNLGLATPAIQVNGYTDRI---GSGDVNLKLSQRRA 339

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G +   I+ + G+        +  D +            +RR+++ ++  
Sbjct: 340 ETVANYLVAKGQNPVSINAV-GYGEANPITGNTCDAVKGRKQLIACLAPDRRVEVQIQGT 398

Query: 342 Q 342
           +
Sbjct: 399 K 399


>gi|332534875|ref|ZP_08410697.1| outer membrane protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035674|gb|EGI72163.1| outer membrane protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 243

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS+  P   + L ++  +L +     + + G  D    R   + N  LS  R  + 
Sbjct: 130 FKTGSSVIAPHFALQLDQLVTLLNNQPQLALDLSGFADQ---RGDEQANLLLSKARVNAV 186

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDI 336
              L+K GVS  R+     F   +    S+ +   N   RR+ +
Sbjct: 187 QSYLIKHGVSHKRL-STQAFGEQQTLANSNTVED-NFFDRRVTL 228


>gi|322435205|ref|YP_004217417.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162932|gb|ADW68637.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 281

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD  S    P+      +    ++      I + G+ D    R  A  N  L  +RA +
Sbjct: 178 FFDYDSIELRPDGQTAAVQAATYMSQHPNLHILVGGYCDE---RGSAEYNLALGENRANA 234

Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
           A   L+ +GV+ +RI  IS G        A++     NRR
Sbjct: 235 AKTALVNAGVAANRIRTISYGKEKQFCTEANEACWQQNRR 274


>gi|149918190|ref|ZP_01906682.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
 gi|149820950|gb|EDM80357.1| OmpA domain protein [Plesiocystis pacifica SIR-1]
          Length = 780

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
               +   ++   L ++   L        + +R HTD              S DRA +  
Sbjct: 673 SGGELNEDKSAEGLDQLAAFLLAHPEYGKVQVRVHTDDRGNPKKR------SQDRADAVV 726

Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
             L+K GV   R+     G         +      N R +  V +
Sbjct: 727 SYLVKKGVPAGRLEAKGWGAKDPVAVNITSDGRRKNNRTEFRVRE 771


>gi|78485244|ref|YP_391169.1| OmpA/MotB [Thiomicrospira crunogena XCL-2]
 gi|78363530|gb|ABB41495.1| Tol system Pal protein [Thiomicrospira crunogena XCL-2]
          Length = 205

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD    I    ++  ++    +L  +  E I + GHTD    R     N  L   RA + 
Sbjct: 104 FDYDQYIVDDTSLETVKHYATILIDNPSEKIQLVGHTDE---RGTPEYNLALGEKRAKAV 160

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336
            +  M  GV +DRI  IS G     ++  ++   + NRR++I
Sbjct: 161 AEAFMLYGVHKDRIEVISLGEELPVMEGHNEEAWAKNRRVEI 202


>gi|42522223|ref|NP_967603.1| peptidoglycan-associated lipoprotein [Bdellovibrio bacteriovorus
           HD100]
 gi|39574754|emb|CAE78596.1| peptidoglycan-associated lipoprotein [Bdellovibrio bacteriovorus
           HD100]
          Length = 168

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
           A+ +  + I GH D+   R     N  L   RA +    ++  G++ DR+S IS +   +
Sbjct: 90  ANPSVRVQIEGHCDS---RGTIEYNVALGERRANAVKAYMVSLGIAADRLSTIS-YGKEK 145

Query: 320 LKIASDPMN--SANRR 333
                D     + NRR
Sbjct: 146 PLETGDTEAAWAKNRR 161


>gi|307332443|ref|ZP_07611507.1| OmpA/MotB domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306881912|gb|EFN13034.1| OmpA/MotB domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 211

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+    E    +++I  E    + + + + G TD             LS  RA +
Sbjct: 106 LFGKDSAKLGGEAKARIKEIASEAERQNAKSVRVFGFTDDLGSAGHGI---VLSKQRANA 162

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
             Q L +  +      +I G+         AS+     NRR+++
Sbjct: 163 VQQALAED-LEPSVNYEIRGYGEQYPIADNASEEGRKRNRRVEV 205


>gi|255608876|ref|XP_002538967.1| conserved hypothetical protein [Ricinus communis]
 gi|223509514|gb|EEF23416.1| conserved hypothetical protein [Ricinus communis]
          Length = 313

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+   +   P     L+++   +  + +V  I + G+TD          N RLS  RA 
Sbjct: 239 FDRGDIAGLSPAGKARLEQLIRDMKQAGDVTAIRVEGYTDRL---GGDALNRRLSAARAE 295

Query: 294 SAYQVLMKSGVSED 307
           +  + L  +G+   
Sbjct: 296 TVRRYLAANGIDAP 309


>gi|213964218|ref|ZP_03392452.1| OmpA family protein [Capnocytophaga sputigena Capno]
 gi|213953137|gb|EEB64485.1| OmpA family protein [Capnocytophaga sputigena Capno]
          Length = 346

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  + S PL      + ++  +L    E  I + G+  AS   ++A +N  LS+ RA + 
Sbjct: 248 FANNKSEPLTYDPTTIDEMVTMLKTHPELSILLEGY--ASEVGSVAYNN-VLSMQRAVNV 304

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            Q+L   G+S +RI   + F     ++   P  +  RR+++ V
Sbjct: 305 AQILKAKGISSERIL--TAFKGIDPQVT--PAEA--RRVELRV 341


>gi|238757961|ref|ZP_04619142.1| Peptidoglycan-associated lipoprotein [Yersinia aldovae ATCC 35236]
 gi|238703715|gb|EEP96251.1| Peptidoglycan-associated lipoprotein [Yersinia aldovae ATCC 35236]
          Length = 168

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHSAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSYKVVVEGHADE---RGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|329119291|ref|ZP_08247978.1| cytochrome c oxidase, subunit II [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464638|gb|EGF10936.1| cytochrome c oxidase, subunit II [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 223

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S         L+ +  V A   + + + G+ D++     A  N  LS  RA +  
Sbjct: 131 FATGKSDVPSGAQEALKDVL-VAALGGKKVVVSGYHDST---GNAAFNEELSKQRALAVR 186

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            VL   GV + +I         + +          RR+++ 
Sbjct: 187 AVLQGFGVPDKQIEL------RKPENTEAGSGEEARRVEVF 221


>gi|297180399|gb|ADI16615.1| hypothetical protein [uncultured delta proteobacterium
           HF0010_01J10]
          Length = 597

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 24/235 (10%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
             + G            +NI    +         +    ++  +D     D E      E
Sbjct: 313 PNEAGEARTDGCPDADGDNIADKDDRCPDVAGTEAFEGCADGDEDGLADPDDECPTEAGE 372

Query: 172 NYFL--PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229
                 P    + +   + +      A+ + +T S   A +   G+       GI     
Sbjct: 373 APAFGCPDADGDNVPDYRDECADDAAAEGVDATRSNGCAADAWVGMNGVQLARGIS---- 428

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRL 287
                  F    +     T   L K+  +L        + +  HT+    R    DN  L
Sbjct: 429 -------FSTGRTTLTSTTRRGLDKVAALLTEFAGLTKVEVAAHTNE---RRSEADNVSL 478

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
           +  RA +    L++ GV+ +R+S I G    +     D   +  RR++  + +++
Sbjct: 479 TKARAEAIMGYLVEKGVAAERLSMI-GHGSEK---TEDGQAA--RRVEFNILEKE 527


>gi|229588694|ref|YP_002870813.1| putative exported flagellar protein [Pseudomonas fluorescens SBW25]
 gi|229360560|emb|CAY47417.1| putative exported flagellar protein [Pseudomonas fluorescens SBW25]
          Length = 302

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  I   +        I + GH+D          N  +S  R  +
Sbjct: 178 FPGGGIELDAAAKKKLDVILAFMKADPTVNHIELNGHSDN---GGNRLTNRDVSRRRGLA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
               L  +G+ E +I+ +           +
Sbjct: 235 VMDYLKANGIPESQIT-LRFHGESYPLAPN 263


>gi|329894132|ref|ZP_08270117.1| OmpA/MotB domain protein [gamma proteobacterium IMCC3088]
 gi|328923304|gb|EGG30624.1| OmpA/MotB domain protein [gamma proteobacterium IMCC3088]
          Length = 228

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 13/210 (6%)

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           S    +   K +   +   G  L     +   +          L    I   K    LQ 
Sbjct: 16  SAGADAAEKKLNSPENIGFGSGLVAGAAIGGPVGGMIGALGGILLGNSITTEKTIAELQA 75

Query: 195 LAKKISSTLSGLVADNIV---KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251
                 S L+   A  I    +      +     + +        F   SS   P     
Sbjct: 76  SLADNESALAAERASRIALEKRNAQLAASMERSRLELAMNVQ---FRTGSSELEPLYQQS 132

Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L+ + E+L   S+  +++ G+ D    R     N +LS  R  +  QV    G+  +RI 
Sbjct: 133 LENMVELLKKDSSLQVTLSGYADR---RGDEAFNEQLSAQRVAAVQQVFRNGGIHLNRI- 188

Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILV 338
           K   F        +  M+  + +RR+ I V
Sbjct: 189 KTREFGERSPVDPTVSMDGHAFDRRVAIEV 218


>gi|296282879|ref|ZP_06860877.1| hypothetical protein CbatJ_04631 [Citromicrobium bathyomarinum
           JL354]
          Length = 335

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
           +  Q   +N F       +      +    EK   L  +     S+ + E      +   
Sbjct: 127 EASQEEFDNAFLAMVDVAANSFDAQVVSIDEKISGLIAAYRSNGSVGRNERIRAGEVESL 186

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           + LA +++   Q LA     T+ GL+ +            TG   S+++ +   MFD+ S
Sbjct: 187 RKLAAQQRTVEQRLA-----TIEGLLTNPRPPSNAMSVIDTG---SLLEGQWRIMFDRGS 238

Query: 242 SIPLPETIVVLQ-KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
               P+ I  ++ ++  +         S+ G++           N  L+  RA + ++ L
Sbjct: 239 DRVNPDQIERVRGEVAAMRERCELWRASVIGYSS---IVGGEEINDALAARRARNVHRSL 295

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANR-------RID 335
               ++ D    I G    ++  + + +N A R       R++
Sbjct: 296 A---INPDDDWAIGGAGETQMFGSEEALNRAVRIRAWCKVRVE 335


>gi|315497902|ref|YP_004086706.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48]
 gi|315415914|gb|ADU12555.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
          Length = 407

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F+   S    +   ++Q+  +  A +     + + GH D       A  N RLS  RA +
Sbjct: 305 FEFDQSTLTADAQAIVQQAADY-AKAGNATRVVVVGHADT---SGSAAYNIRLSERRAKT 360

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
               L   GVS   I  +         +A+        NRR  IDI
Sbjct: 361 VADALAGLGVSGS-ILAVDWKGESAPAVATGDGVKEPLNRRSTIDI 405


>gi|149190367|ref|ZP_01868639.1| sodium-type flagellar protein MotY precursor [Vibrio shilonii AK1]
 gi|148835746|gb|EDL52711.1| sodium-type flagellar protein MotY precursor [Vibrio shilonii AK1]
          Length = 294

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +D++S      +   L++I E +      +++ +  +TD+S  +  ++   +LS  RA  
Sbjct: 188 YDRNSEQLNKTSQHRLEQIAEYVRYNQDIDLVLVSTYTDSSDSKGESQ---QLSDKRASI 244

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
                   G+ +DRI ++ G+   R    +      + N+R+ I
Sbjct: 245 LQDYFQSLGLPKDRI-QVQGYGKRRPVAENSSPIGKAKNQRVVI 287


>gi|193213926|ref|YP_001995125.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087403|gb|ACF12678.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 702

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
           E +   I I I D     +F   ++     T   + ++G  +A   +  I I+G      
Sbjct: 42  ELSPGNIWI-INDD----VFYPGTATINKSTQAAVDRLGLYVAARPDLKILIQG-----N 91

Query: 277 FRNIARDNWR-L-SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331
           + N        L S +RA +  + L+    +   RI  + G+   R           + N
Sbjct: 92  WSNEGNTVREKLYSEERALAIQRFLIYTHNIDPSRIQTV-GYGSARPLTVEKTAADKARN 150

Query: 332 RRIDILVEDR 341
           R + I+   +
Sbjct: 151 RAVTIVGLTK 160


>gi|126724638|ref|ZP_01740481.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150]
 gi|126705802|gb|EBA04892.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150]
          Length = 521

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPE 247
           +RL +  + +++ +     D        +  R G  + +S         F   S+    +
Sbjct: 369 QRLTEQGEILANAIEKPDNDIAEIRRYLDVVRGGKKLSVSFH-------FKSGSTDLDVQ 421

Query: 248 TIVVLQKIGEVL--AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
           +   L+++ +++         +   GH+D      I +    +S  R+ +  + + ++  
Sbjct: 422 SSGNLERLAQIIEIGGMDGKELIFVGHSDGEGDAGINQS---ISNRRSNAVLRDIRRAAK 478

Query: 305 SEDRISKI----SGFAHHRLKIASDPM--NSANRRIDILVED 340
           S D +S++     GF         D       NRR+++ +++
Sbjct: 479 SAD-LSRVKLSGVGFGEVFPIACDDSEWGKRINRRVEVWIKE 519


>gi|75908071|ref|YP_322367.1| hypothetical protein Ava_1850 [Anabaena variabilis ATCC 29413]
 gi|75701796|gb|ABA21472.1| hypothetical protein Ava_1850 [Anabaena variabilis ATCC 29413]
          Length = 215

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 37/148 (25%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHST-----EVISIRGHTDASP--- 276
           I +I       F   S+   P+  + +L++I   +   T      V+ I GHTD  P   
Sbjct: 56  IILIKDEGAYRFASGSAEIPPKMLVYILRRIVPEIEARTKQYNINVVEIIGHTDGQPNGN 115

Query: 277 -------------------FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GF 315
                                  A  N  L L RA +  +VL      + ++SK+S  G+
Sbjct: 116 VVSNLDQNLEKVVNGELPIVNLRAGSNADLGLMRALAVVKVLRDVQRKQGKLSKLSFRGY 175

Query: 316 AHHRLKIASDPMNSA-------NRRIDI 336
           +  ++ + S  + +         RRI+I
Sbjct: 176 SAAQMILPSGEVAAIARQDDQTRRRIEI 203


>gi|71908555|ref|YP_286142.1| hypothetical protein Daro_2942 [Dechloromonas aromatica RCB]
 gi|71848176|gb|AAZ47672.1| hypothetical protein Daro_2942 [Dechloromonas aromatica RCB]
          Length = 425

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 18/115 (15%)

Query: 236 MFDKSS------SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           +F   S      +       + L+ I +    S   + + GHT  +        N RLSL
Sbjct: 314 LFRPGSTAFVQDAKLSGPYPLWLKTIAQRSGGSANCLEVTGHTSPT---GPEPLNERLSL 370

Query: 290 DRAYSAYQVLMKSGVSE---DRISKISGFAHHRLKI---ASDPMNSANRRIDILV 338
            RA    + L  +G+S     R+   +G    +  +     D  ++ +RR++  V
Sbjct: 371 LRAEYVKERL--AGMSPSLAKRMIA-NGVGSRQTLVGTGRDDASDALDRRVEFKV 422


>gi|82523887|emb|CAI78610.1| peptidoglycan-associated lipoprotein [uncultured delta
           proteobacterium]
          Length = 184

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227
            K+E     P    +    +R K+L+  A++ +   +   A  + K  + E  +    I 
Sbjct: 26  TKKEVAVEDPTMTSQNGEQERLKQLE--AERAAQAKAETEAMRLAKSEMLEKFKN---ID 80

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I        F+   S    E  ++L++    L+ ++    +I GH D    R  +  N  
Sbjct: 81  IY-------FEFDKSSLTEEAKLILKEKALFLSANSAKNTTIEGHCDE---RGTSEYNLA 130

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
           L   RA +    L   G+S  RI   + +          ++   + NRR
Sbjct: 131 LGDRRAKNVKTYLQGLGISGQRII-TTSYGEEMPVDTGHNETAWAKNRR 178


>gi|318079837|ref|ZP_07987169.1| secreted protein [Streptomyces sp. SA3_actF]
          Length = 166

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +FDK      P     ++ IGE         + + G TD             LS  RA  
Sbjct: 61  LFDKDKFALDPSGRARIKAIGEEAKKQRARTVRVFGFTDNL---GSYAHGKTLSKRRADI 117

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336
            +  L +  +  +   ++ G++       +  +     NRR+++
Sbjct: 118 VHDELAQY-LGPEVTFEVRGYSEDYPIADNTTEEGRRKNRRVEV 160


>gi|229172879|ref|ZP_04300433.1| Excalibur domain protein [Bacillus cereus MM3]
 gi|228610624|gb|EEK67892.1| Excalibur domain protein [Bacillus cereus MM3]
          Length = 302

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 2/177 (1%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A   I +  +    ++  
Sbjct: 66  FATLSLILFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFGALSSISNPSSEKTSATSK 125

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  +  E    +  +L+    ++K Q Q  E         +Q +  + +  +  ++  +
Sbjct: 126 KVASNNAEQNDSDKKELEKKEADEKTQKQENEKLQAEEQARKQEDEKRLADEQARKQQDE 185

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
             +  D +    +EE          K    + +KRL D   +        +AD   +
Sbjct: 186 QKRLADEQARKQQEEQKRQADEQARK--QQEEQKRLADEQARKQQEEQKRIADEQAR 240


>gi|108762481|ref|YP_632884.1| OmpA family protein [Myxococcus xanthus DK 1622]
 gi|108466361|gb|ABF91546.1| OmpA family protein [Myxococcus xanthus DK 1622]
          Length = 386

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 23/116 (19%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNIARDNWRLS 288
           F    +         L K   ++  +        +  + + GHTD       A +N  LS
Sbjct: 261 FASGQADIPATERGKLDKSHALIVDALTKYGRFASLRLYVMGHTDTV---GAAAENLDLS 317

Query: 289 LDRAYSAYQVLMKSGVSEDRISKI----SGFAHHRLKI--ASDPMNSANRRIDILV 338
           + RA S      K G+      ++     G       +    +   + NRR + ++
Sbjct: 318 VRRAKSLAAYFRKKGL------RVPVYYEGLGEEAPAVATPDETAEAGNRRAEYII 367


>gi|332877840|ref|ZP_08445578.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684135|gb|EGJ56994.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 362

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  +S++        ++++   L  + +  + I G+ D +       D   LSL 
Sbjct: 260 QENVFFKLNSAVIRASEEAKIERLAAYLTANPQAKVVICGYADKATGTPKIND--ALSLK 317

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA +  + L    +   RI ++               N    R+ I +
Sbjct: 318 RAQAVSKALQVKKIDAGRI-RVEHKGDSVQPFTEVEKN----RVSICI 360


>gi|170691332|ref|ZP_02882497.1| peptidoglycan-associated lipoprotein [Burkholderia graminis C4D1M]
 gi|170143537|gb|EDT11700.1| peptidoglycan-associated lipoprotein [Burkholderia graminis C4D1M]
          Length = 169

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     +   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 67  FDFDSYSVKDDYQSLLQQHSQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 123

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337
            + L   GV++ ++  +S G    +     +   + NRR D++
Sbjct: 124 RRSLSLMGVTDSQMEAVSLGKEKPQATGHDESSWAQNRRADLV 166


>gi|124003558|ref|ZP_01688407.1| hypothetical protein M23134_03217 [Microscilla marina ATCC 23134]
 gi|123991127|gb|EAY30579.1| hypothetical protein M23134_03217 [Microscilla marina ATCC 23134]
          Length = 326

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           R + + +     +  L+ +   KG+   +   G+ I+    R   +F K ++        
Sbjct: 186 RFRPVLQVTLENVKSLLYEVNSKGMAVTSNSKGVQIN---CRRGVLFTKGTTAISSLGQN 242

Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDR 308
           +L ++ + L       ++I     A P RN      W L+  R  +  + L+  G+   R
Sbjct: 243 ILVRLAKTLKSSVKVRLAI-----AVPVRNGIDAGRWMLASARGRTMVEQLINRGIDPAR 297

Query: 309 I 309
           I
Sbjct: 298 I 298


>gi|34540795|ref|NP_905274.1| OmpA family protein [Porphyromonas gingivalis W83]
 gi|5081701|gb|AAD39496.1|AF145800_1 immunogenic 75 kDa protein PG4 [Porphyromonas gingivalis]
 gi|34397109|gb|AAQ66173.1| OmpA family protein [Porphyromonas gingivalis W83]
          Length = 672

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +D   +   PE++  L ++  +L  + +  I +  H D    +     N  LS  RA S
Sbjct: 538 FYDFDKATLRPESMKSLDELIRILTDNPDIRIELGSHADR---KGPDAYNLGLSDRRAKS 594

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
               L   G++ DR++   G+     K  +
Sbjct: 595 VVDYLTSRGIAADRLTW-KGYGKSVPKTVT 623


>gi|269123022|ref|YP_003305599.1| OmpA/MotB domain-containing protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268314348|gb|ACZ00722.1| OmpA/MotB domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 491

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 19/280 (6%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           N   K  +TA   +     P     +  I+  +   +        I    +K     +E 
Sbjct: 204 NVINKVGITAGLRLGQLSKPVVEEPKLPIEPEVKPEVKPEPKPEVIEKIVEKIVEVPVEK 263

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
            +  +      +  +  +    EK  +      +EK + K     +  + ++ +     K
Sbjct: 264 IVEKIVEVPVEKIVEKIVEVPVEKVVEKIVEVPVEKMVEKIVEVPVEKMVEKIVEVPVEK 323

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
              + +   +   +           V          I +       +F            
Sbjct: 324 VVEKMVEVPVEKIVEKEKEVVKEVEVPVHIKPQIKKIELSAD---ALFKFDKYKLEDMLE 380

Query: 250 VVLQKIGEVLAHST------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
               +I E++   +      + I I GHTD          N  L L RA +    L + G
Sbjct: 381 KGKMEIQELVKKLSTDYVRLDRIDIIGHTDRL---GSDSYNLALGLRRAQTVRSYLQELG 437

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-------NRRIDI 336
           V+        G    ++K       +        NRR++I
Sbjct: 438 VTTPITVASKGKRDPKVKCPGTKATAKLKQCLLPNRRVEI 477


>gi|71907931|ref|YP_285518.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847552|gb|AAZ47048.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 225

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S++  P     L ++   L  +   I+I G TD +        N  L+L RA +  
Sbjct: 118 FGLGSAMLSPAARSSLNEVMSALLSA-RQITIIGRTDNT---GPLAFNESLALARALAVR 173

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337
             L+ +         +          A+D +     NRR++++
Sbjct: 174 DHLLSTHPMLTPTLSVKARGTCCFIAANDTLAGRTQNRRVELV 216


>gi|167648381|ref|YP_001686044.1| peptidoglycan-associated lipoprotein [Caulobacter sp. K31]
 gi|167350811|gb|ABZ73546.1| peptidoglycan-associated lipoprotein [Caulobacter sp. K31]
          Length = 185

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD        +    L    + L       + I G+ D    R     N  L   R
Sbjct: 76  ERIYFDTDQYDIRSDAQPTLAAQAQWLNRYPAVRVRIEGNADE---RGTREYNLALGARR 132

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           A +  + L+  GVS  RI  +S +   +     + +   + NR
Sbjct: 133 ANAVREFLVAQGVSGSRIETLS-YGKEKPIDGGSGEESWAKNR 174


>gi|73920657|gb|AAZ94164.1| OpcL [Burkholderia sp. BC92]
          Length = 139

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   ++Q+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 42  FDFDSYSVKDEYQPLMQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 98

Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            + +   GV++ ++  +S G    +     +   + NRR
Sbjct: 99  RRAMALLGVNDSQMEAVSLGKEKPQATGHDEASWAQNRR 137


>gi|226227347|ref|YP_002761453.1| putative peptidoglycan-associated lipoprotein [Gemmatimonas
           aurantiaca T-27]
 gi|226090538|dbj|BAH38983.1| putative peptidoglycan-associated lipoprotein [Gemmatimonas
           aurantiaca T-27]
          Length = 185

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 220 TRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274
           T       I + R   +    F+  +     E    L     +L  +    I I GH D 
Sbjct: 53  TMEAYRSKIAEARARLLETIYFEYDADELRDEARASLDAKLAILNANPGLRIRIAGHCDE 112

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANR 332
              R     N  L   R+ +A + L   GV   RI   S F   R  ++  S+   S NR
Sbjct: 113 ---RGSDEYNIALGRRRSEAAKRYLTDRGVDASRIETSS-FGRERPAVSGTSEESWSKNR 168

Query: 333 R 333
           R
Sbjct: 169 R 169


>gi|325068013|ref|ZP_08126686.1| OmpA/MotB domain protein [Actinomyces oris K20]
          Length = 336

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 75/257 (29%), Gaps = 21/257 (8%)

Query: 49  LVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN----PPERSSQNKIDLSIDE 104
           L + +  A DD   K +    N  G N+  A + +  +       P       +DL  + 
Sbjct: 90  LALKLTRAKDDAAVKEVSDSLNDHGSNVFEADRPLTRQGGNRTYRPAAGGVRLLDLPTNR 149

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
                +   +    N                    +   K       + G       D  
Sbjct: 150 VWLATTGVEQTSKDNYANTIALKPGETTTCFVLFGAVDTKQVTVFVPQAGFVTVNVLDSS 209

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT---- 220
            +     ++     + + +++  R     D +K I +  +    +   + +   T+    
Sbjct: 210 AAAASGIDFKAVDKAFDDVISYSR-----DESKPIQALAAPAPIERYTQALDDSTSTLAD 264

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFR 278
              + +++        F   S+   P     L+ +   LA       +SI GHTD     
Sbjct: 265 NQKVTVTLASDVT---FASDSADLAPAADAQLKTVAGQLAQYPDGGTLSIVGHTDDVQ-- 319

Query: 279 NIARDNWRLSLDRAYSA 295
                N  LS  RA + 
Sbjct: 320 -DDAYNQTLSEKRANAV 335


>gi|89067386|ref|ZP_01154899.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
 gi|89046955|gb|EAR53009.1| OmpA domain protein [Oceanicola granulosus HTCC2516]
          Length = 485

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F + ++   P++   L ++   +   AH  + + + G TD       A  N RL  +RA 
Sbjct: 378 FGRGATELDPQSRTNLFQLAADIRDGAHDGQTLLLLGFTDGI---GPASANRRLGAERAD 434

Query: 294 SAYQVLMK--SGVSEDRI-SKISGFAHHRLKIASDPM--NSANRRIDILVE 339
                L+    G   + +  +  GF         D       NRR+++ V+
Sbjct: 435 EVLATLLAALGGALPEGVEVRTEGFGEALPMGCDDTEWGRQINRRVELWVD 485


>gi|85708814|ref|ZP_01039880.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
 gi|85690348|gb|EAQ30351.1| peptidoglycan-associated protein [Erythrobacter sp. NAP1]
          Length = 378

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S    +   +L   I          + + GHTD          N  L+  R  S
Sbjct: 271 FFDFDESAITADAATILDNAITAYANCGMARVMLAGHTDR---SGSVSYNMALAERRNMS 327

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
             + +   G+   RI     F   + ++ +        NRR+++
Sbjct: 328 VMEYMTGRGIPAARIMG-EAFGESQPRVPTADGVRELQNRRVEV 370


>gi|257464878|ref|ZP_05629249.1| Plp4 [Actinobacillus minor 202]
 gi|257450538|gb|EEV24581.1| Plp4 [Actinobacillus minor 202]
          Length = 255

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           + D     +FD  SS+   E    +  I  ++       I+++G TD          N  
Sbjct: 140 VFDLSADVLFDFDSSVLTEEGKREVSNIALKLRQQQATNITVKGWTDRL---GSDSYNLN 196

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-------NRRIDILVE 339
           LS  RA +    L+ +G++     K  G     L    +            NR++++LV 
Sbjct: 197 LSQLRAEAVKTELLNNGLNIS--IKAQGKGKLDLVACHNEDYEELKQCLKPNRKVEVLVN 254

Query: 340 D 340
           D
Sbjct: 255 D 255


>gi|218961922|ref|YP_001741697.1| hypothetical protein CLOAM1655 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730579|emb|CAO81491.1| hypothetical protein CLOAM1655 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 201

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 24/164 (14%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           KR++   K I    S      + K +  E  +    I I       +F+   S    + +
Sbjct: 39  KRVEADQKDIDDFKS------MFKSLDLELNQENNEIII---PADILFEFDKSELKSDNL 89

Query: 250 VVLQKIGEVLA---HSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
             +++  + L       +      I I GHTD          N++LSLDR+ S  +   +
Sbjct: 90  PKIRQFRKKLKNYMQVGDRKKRYCIIIEGHTDTV---GDKNYNYKLSLDRSLSLIKEFKE 146

Query: 302 SGV--SEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341
                  D     + F   +L      + +N  NRR+ I +  +
Sbjct: 147 DDFFRDPDIDLIPAAFGESKLAVPTPDNTINKKNRRVVIRIVPK 190


>gi|284051994|ref|ZP_06382204.1| hypothetical protein AplaP_11036 [Arthrospira platensis str.
           Paraca]
 gi|291568824|dbj|BAI91096.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 266

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 38/212 (17%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           +D   S ++E    +  L         +   LQ    ++ + L       +      E  
Sbjct: 48  SDATASRSEELQIQMSELQSRLQQQTTQVTGLQGEVARLQTELRNRGDRIMQLQGEVERL 107

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIV-----VLQKIGEVLAHSTE-VISIRGHTDA 274
           ++  +I + D  +   FD  S+    E        ++ +I +        V+ + GHTD 
Sbjct: 108 KSPPVIVLRDSSSRT-FDSGSAAISLELTEFIDNQLVAQIKDFAKDYEGYVVEVIGHTDG 166

Query: 275 SPFRNIARDNW-----------------------RLSLDRAYSAYQVLMKSGVSEDRISK 311
                    N                         L L RA +  Q L ++   +     
Sbjct: 167 Q-ITGGGYSNLDQVLEEVARNNQAVTSLVPGSNADLGLMRALAVVQRLQENEELQSLGLT 225

Query: 312 ISGFAHHRLKIASDPMNSAN-------RRIDI 336
              ++  +L  AS    + N       RRI+I
Sbjct: 226 FKAYSAAQLYEASGNYAAINRTSDPSRRRIEI 257


>gi|171912007|ref|ZP_02927477.1| OmpA/MotB domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1122

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 215  VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274
            + F++    +    + Q N   F   +     E   + +K    L        + GH D+
Sbjct: 1000 LRFDSNDGNLNAPSVQQLNR--FFIGAPTLDDEEKRIDRKRRSDL-LIQYRFVLEGHADS 1056

Query: 275  SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332
                     N RLS  RA +    +   GV   ++  I  F        +  +     NR
Sbjct: 1057 I---GTEASNMRLSERRARTVATFIESMGVDRSKL-SIKWFGESLPVDDNSVEAGRYKNR 1112

Query: 333  RIDI 336
            R++I
Sbjct: 1113 RVEI 1116


>gi|329849481|ref|ZP_08264327.1| ompA family protein [Asticcacaulis biprosthecum C19]
 gi|328841392|gb|EGF90962.1| ompA family protein [Asticcacaulis biprosthecum C19]
          Length = 408

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D+     F+   S    +   V+    +         + + GH D       A  N RLS
Sbjct: 299 DRTFIVYFEFDKSDLTADAQAVVSAAADYAKTGGAARVVVVGHADT---SGSAAYNIRLS 355

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
             RA +    L   GV   ++  +      +  +A+        NRR  IDI
Sbjct: 356 ERRAKTVADALAGLGVDGSKL-AVDWKGESQPAVATGDGVKEPLNRRSTIDI 406


>gi|73539667|ref|YP_300034.1| OmpA/MotB:SmpA/OmlA [Ralstonia eutropha JMP134]
 gi|72123004|gb|AAZ65190.1| OmpA/MotB:SmpA/OmlA [Ralstonia eutropha JMP134]
          Length = 292

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 242 SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           +  +P     +  +G+ LA     + + +  +TD          N RLS  RA +   +L
Sbjct: 186 AELVPNGHARIDALGQQLAGMKMLKHVDVYAYTDRL---GTDAYNKRLSQQRADTVKSLL 242

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336
           +  GV   R+    G            M         + +RR++I
Sbjct: 243 VAQGVDS-RLVTAQGMGKADPLSHCGAMPRPKLITCLAPDRRVEI 286


>gi|221640665|ref|YP_002526927.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|221161446|gb|ACM02426.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131]
          Length = 485

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F++ +    P++   L ++ ++L       + + + G +D    R  AR N  LS +RA 
Sbjct: 374 FEEGTDSLEPQSRESLSELIKLLEIGRFRGQQLMLIGFSDG---RGPARANLDLSRERAE 430

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           +    L ++ V       + GF           +     NRR+++ +  
Sbjct: 431 TVAAALREA-VPVLGPPLVEGFGEALPLACDTTVAGRRMNRRVELWLRP 478


>gi|251771621|gb|EES52197.1| outer membrane protein, OmpA/MotB family [Leptospirillum
           ferrodiazotrophum]
          Length = 186

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S+   E   +L+K   +L       + I GH D    R     N  L   RA +A
Sbjct: 79  FGFDKSLLSSEDRGILKKDASILKAHPSVKVVIAGHADE---RGTDAYNIVLGQKRAKAA 135

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
              L++ GVS  RI  +S +    +  
Sbjct: 136 RIYLIRLGVSAKRIKIVS-YGKREIPN 161


>gi|259090537|gb|ACV91891.1| OprL [Pseudomonas fluorescens]
 gi|259090541|gb|ACV91893.1| OprL [Pseudomonas fluorescens]
          Length = 156

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 66  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI 322
           + L+  GVS  ++  +S +   R   
Sbjct: 123 RYLVLQGVSPAQLELVS-YGKERPVA 147


>gi|51595504|ref|YP_069695.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|153948068|ref|YP_001401830.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025177|ref|YP_001721682.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pseudotuberculosis YPIII]
 gi|186894557|ref|YP_001871669.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588786|emb|CAH20400.1| peptidoglycan-associated lipoprotein Pal, OmpA family of porins
           [Yersinia pseudotuberculosis IP 32953]
 gi|152959563|gb|ABS47024.1| peptidoglycan-associated lipoprotein [Yersinia pseudotuberculosis
           IP 31758]
 gi|169751711|gb|ACA69229.1| peptidoglycan-associated lipoprotein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697583|gb|ACC88212.1| peptidoglycan-associated lipoprotein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 168

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +    + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSYKVVVEGHADE---RGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|91204944|ref|YP_537299.1| peptidoglycan-associated lipoprotein precursor [Rickettsia bellii
           RML369-C]
 gi|157827728|ref|YP_001496792.1| peptidoglycan-associated lipoprotein precursor [Rickettsia bellii
           OSU 85-389]
 gi|91068488|gb|ABE04210.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia bellii
           RML369-C]
 gi|157803032|gb|ABV79755.1| Peptidoglycan-associated lipoprotein precursor [Rickettsia bellii
           OSU 85-389]
          Length = 155

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS    +    LQ+    L+       ++ GH D    R     N  L   RA  A
Sbjct: 53  FAFNSSALSEKAKEELQRQACWLSRHPHVKATVEGHCDD---RGTREYNLALGERRAQKA 109

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            + L   G+   R+S IS +   RL +   ++  ++ NRR
Sbjct: 110 AEFLRHKGIEHHRVSTIS-YGKDRLAMMGNTEEAHAYNRR 148


>gi|82703306|ref|YP_412872.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
 gi|82411371|gb|ABB75480.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196]
          Length = 225

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDN 284
           IS+   +   +FD   +   PE    L  +   L        +  G+ D          N
Sbjct: 99  ISLSADQ---LFDFDKANLRPEGKQTLDDLVAKLGGVKYDTIVAIGYADRL---GSDAYN 152

Query: 285 WRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIAS 324
            +LS+ RA S    L+ + G+  DRI  I G          
Sbjct: 153 KKLSMRRAESVKAYLVNEKGIPADRIF-IDGKGEANPVTGD 192


>gi|163789217|ref|ZP_02183659.1| hypothetical protein FBALC1_00030 [Flavobacteriales bacterium
           ALC-1]
 gi|159875432|gb|EDP69494.1| hypothetical protein FBALC1_00030 [Flavobacteriales bacterium
           ALC-1]
          Length = 238

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264
             V ++  + +L    + G  I +    +  +F    S    E+  VL KI  +LA  T 
Sbjct: 139 KEVKEDNTETLLKGELKEGDKILL----DNLLFRTGYSYLTKESKPVLDKIAVILAERTN 194

Query: 265 V-ISIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           V  +I GH        DA   +   R+   LS+ RA   Y  L+K
Sbjct: 195 VYFTIEGHVCCTQGERDAIDRKTKKRN---LSVARAKYIYDYLVK 236



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
           P  E   +L  + +V     E ISI G  D    R     N  LS  RA +   V   + 
Sbjct: 35  PETEHSRLLLFLSKVEEMDIEKISIYGFCDD---RGSDNYNLVLSQQRADAIKTVFSNNE 91

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA----NRRIDILVED 340
             E  I+ + G     L I  +   S     NR+++I+V+ 
Sbjct: 92  FDESVITNVDGKGEILLNIVHEENLSKIRGLNRKVEIIVKP 132


>gi|330997212|ref|ZP_08321065.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329571007|gb|EGG52714.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 377

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
           C   D   ++N   +      + +       +K + DL K ++   +  V     + V  
Sbjct: 215 CSHADQIAALNATISSMEAEAAGKDRALQNAQKTINDLQKDLNDCKNKKVPTTATQTV-- 272

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
                 ++I          F +SSS      +  + ++   L  ++   ++I G+  ASP
Sbjct: 273 -EKNEYVVI----------FRQSSSKVDALQMPNIDRLASYLKKNSNAKVTISGY--ASP 319

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
             N    N +LS  RA +   +L+K  G+S +RI
Sbjct: 320 EGNAKF-NQKLSEKRAEAVKNILVKEYGISANRI 352


>gi|32035883|ref|ZP_00135676.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 137

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 236 MFDKSSSIPLPETIVVLQ----KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD   S   P     L     +I   L  +T  I + G+TD          N +LS  R
Sbjct: 17  LFDFGKSSLKPAAATALDAANTEIAN-LGLATPAIQVNGYTDRI---GKEASNLKLSQRR 72

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVE 339
           A +    L+  G +   ++ + G+        +               + +RR+++ V+
Sbjct: 73  AETVANYLVSKGQNPANVTAV-GYGEANPVTGATCDAVKGRKALIACLAPDRRVEVQVQ 130


>gi|114562800|ref|YP_750313.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|114334093|gb|ABI71475.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 255

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K         ++K    ++   L   +++ +    +++ L+ +++K     S L    + 
Sbjct: 70  KSVGDEAELSVQKQQLVQQEKKLTQTNEQLMALSTKQQSLEQVSEKYYQLQSNLAEQKVN 129

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
           +         G+ +          F    S   P     L  +  +++ S E  I + G+
Sbjct: 130 QQQTLNELTIGMNVQ---------FKTGLSHIEPLFEQQLDNVAYMMSLSPELTIDLTGY 180

Query: 272 TDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
            D    R    D N  LS  R     Q L+  G++ +R+    G A+          N  
Sbjct: 181 AD----RRGDNDFNQALSEQRLAEVTQYLVTQGIARERLH---GQAYGSTLPMHQEQNFE 233

Query: 331 N----RRIDILVE 339
           N    RR+ + + 
Sbjct: 234 NDFFDRRVTLKLL 246


>gi|269797531|ref|YP_003311431.1| OmpA/MotB domain protein [Veillonella parvula DSM 2008]
 gi|269094160|gb|ACZ24151.1| OmpA/MotB domain protein [Veillonella parvula DSM 2008]
          Length = 345

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  NIA     LS  R     Q L+  GVS DR+  I+     +    +      +
Sbjct: 281 TDANPQYNIA-----LSERRVQHVAQYLVNHGVSADRLIGIA-NGDVKPVATNSTAAGKA 334

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 335 ENRRVDVYIHR 345


>gi|126736793|ref|ZP_01752530.1| OmpA/MotB [Roseobacter sp. CCS2]
 gi|126713694|gb|EBA10568.1| OmpA/MotB [Roseobacter sp. CCS2]
          Length = 162

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 13/159 (8%)

Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPE 247
           L+    +  +  + LVA+     V FE    G ++  +D+ +       F   SS     
Sbjct: 3   LRRSQAEGDARRAALVAEMARYDVGFEGELMGDMLGEMDENDRLSTTFRFRTGSSKLDER 62

Query: 248 TIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSG 303
             + +Q++   L    +   +   G TD          N RL+  RA +  + +  +  G
Sbjct: 63  GRLDMQRLIAYLQRVPDGTEVTFVGFTDDV---GAFDANQRLAEQRAAAVMEEMRAITGG 119

Query: 304 VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340
              +     +G+        +  +     NRR+++ + +
Sbjct: 120 SINNVTMSTAGYGEIAPSACNISERGRGINRRVEVWISN 158


>gi|148257389|ref|YP_001241974.1| hypothetical protein BBta_6143 [Bradyrhizobium sp. BTAi1]
 gi|146409562|gb|ABQ38068.1| Putative outer membrane protein [Bradyrhizobium sp. BTAi1]
          Length = 222

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           FD+ + I  P++   + +I + + H         I GH +A+        N  LS  RA 
Sbjct: 91  FDQDTPIVRPDSYQTVGRIADAMVHSELLPYTFLIVGHVEAN---GRREPNVILSQRRAD 147

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           +   +L  +     +  +  G    +L   S P  S N++I I+
Sbjct: 148 AIRDILANTFKISVKRLQSIGLGEEQLLDPSKPTASVNQQIQII 191


>gi|282848786|ref|ZP_06258180.1| OmpA family protein [Veillonella parvula ATCC 17745]
 gi|294795118|ref|ZP_06760253.1| outer membrane porin F (Root adhesin) [Veillonella sp. 3_1_44]
 gi|282581500|gb|EFB86889.1| OmpA family protein [Veillonella parvula ATCC 17745]
 gi|294454480|gb|EFG22854.1| outer membrane porin F (Root adhesin) [Veillonella sp. 3_1_44]
          Length = 345

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  NIA     LS  R     Q L+  GVS DR+  I+     +    +      +
Sbjct: 281 TDANPQYNIA-----LSERRVQHVAQYLVNHGVSADRLIGIA-NGDVKPVATNSTAAGKA 334

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 335 ENRRVDVYIHR 345


>gi|294792911|ref|ZP_06758057.1| outer membrane protein OprF [Veillonella sp. 6_1_27]
 gi|294455856|gb|EFG24220.1| outer membrane protein OprF [Veillonella sp. 6_1_27]
          Length = 345

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329
           TDA+P  NIA     LS  R     Q L+  GVS DR+  I+     +    +      +
Sbjct: 281 TDANPQYNIA-----LSERRVQHVAQYLVNHGVSADRLIGIA-NGDVKPVATNSTAAGKA 334

Query: 330 ANRRIDILVED 340
            NRR+D+ +  
Sbjct: 335 ENRRVDVYIHR 345


>gi|284048662|ref|YP_003399001.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952883|gb|ADB47686.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 351

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD     P       L     V     +    + G+TD+    + A  N  LS  R  + 
Sbjct: 249 FDSDVDTPKASEAAKLANFVAVAKAHPDSTFKLVGNTDSD--ASNAY-NEDLSKRRVLNV 305

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
            +    +GV+  R+ +++    +      A++   + NRR+DI
Sbjct: 306 ARYANDNGVAASRM-QLNYKGENNPVSSNATEAGKADNRRVDI 347


>gi|260574615|ref|ZP_05842618.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259023032|gb|EEW26325.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 213

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S++        L +    +         + GH D     +    N  L L RA + 
Sbjct: 69  FEFNSAVLDGAAQAALDQQANWIRQFPEVRFRVYGHAD--RVGSNGY-NHALGLKRARAV 125

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
              L   G+S  R+  +  +   R  + +      NRR
Sbjct: 126 VSYLNSRGISRSRLEAMVSYGETRPVVDTLGPEVRNRR 163


>gi|228470936|ref|ZP_04055781.1| outer membrane protein 40 [Porphyromonas uenonis 60-3]
 gi|228307333|gb|EEK16347.1| outer membrane protein 40 [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            N   F   S+      ++ +    E    +   I I G+ D       A+ N  LS  R
Sbjct: 286 ENVVAFRIGSAKIDKNQMINVYNSAEAAKANGGKIYIVGYADEQ--TGNAKINMSLSQRR 343

Query: 292 AYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           A +  + L+ K GV+ D I  I          A++  N    R+ I+
Sbjct: 344 AEAVKKALVNKYGVNPDNIV-IDYKGDTVQPFATNEWN----RVAII 385


>gi|293395760|ref|ZP_06640042.1| outer membrane protein A [Serratia odorifera DSM 4582]
 gi|291421697|gb|EFE94944.1| outer membrane protein A [Serratia odorifera DSM 4582]
          Length = 352

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKI--GEVLAHSTEVIS-IRGHTDASPFRNIARD 283
              + ++  MF  +S+   P+    ++ +     +  +    + + G++D     +    
Sbjct: 223 QRFNLKSDVMFGYNSAELSPQGQAAVRDLYNRPEIQSAKNQTTMVIGYSD--RIGSADY- 279

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335
           N +LS  RA +    L+  G+    + +  G         +  D +++ ++RID
Sbjct: 280 NQQLSSRRAQAVADELIGLGMPAANV-QAQGRGASESVTGTQCDGISARSQRID 332


>gi|146278796|ref|YP_001168955.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557037|gb|ABP71650.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 499

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F++  +    ++   L  + +++       + + + G +D    R  A  N  LS DRA 
Sbjct: 388 FEEGGNKLEAQSREALTDLVKLVEVGRFRDQQLMLVGFSDG---RGSAEANLSLSRDRAA 444

Query: 294 SAYQVLMKSG--VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
           +  + L ++   ++      + GF           +     NRR+++ +    G
Sbjct: 445 TVARALQEAAPDLAPP---LVEGFGEALPLACDTTVAGRRMNRRVELWLRPLTG 495


>gi|254464865|ref|ZP_05078276.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
 gi|206685773|gb|EDZ46255.1| OmpA/MotB [Rhodobacterales bacterium Y4I]
          Length = 517

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+ P  ++   ++++   L       + I   G +D       A  N +++L RA 
Sbjct: 410 FEPGSARPDAQSRSNIEQLARALEAGEFDAKEIVFAGFSDGV---GPAEGNRQIALKRAG 466

Query: 294 SAYQVLMKSGVSEDRISKI----SGFAHHRLKIASDP--MNSANRRIDILV 338
           +    ++K+  + D IS++     GF         D       NRR+++ V
Sbjct: 467 AVRDAVVKAAETAD-ISRVRIRTEGFGEALPMACDDSAWGRQINRRVEVWV 516


>gi|300773376|ref|ZP_07083245.1| major outer membrane protein OmpA [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759547|gb|EFK56374.1| major outer membrane protein OmpA [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 394

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 189 KKRLQDLAKKISSTLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           ++ L  L ++++   +    ++  + +      T   +  +I+       F   SS    
Sbjct: 244 EEELNALRRRVNELAANNDALSKQLEEAGNKSMTNVIVNKNILAAPILVTFKIGSSEISN 303

Query: 247 ETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-G 303
           ET V L    +V+    + +   I G+ D       +  N RLS+ RA +   +L+    
Sbjct: 304 ETRVNLGFFAKVIKEGDQQVVYRITGYADKG--TGTSEINQRLSMARAEAVKNILVNEFA 361

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA 330
           V   +++ ++      +   +DP  S 
Sbjct: 362 VPARQLATVAAGGVDNMYY-NDPKLSR 387


>gi|329298438|ref|ZP_08255774.1| predicted outer membrane protein [Plautia stali symbiont]
          Length = 247

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 28/179 (15%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ---RNTP 235
           S   ++  +++ +L+ L+ K  + L       + +    ++ + G      D+    +  
Sbjct: 81  SGRPLVVSQQQAQLELLSTKRQAHL-------LSRASSVQSCQEG-TTEAYDKYAFSSDL 132

Query: 236 MFDKSSS---IPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           +F   S+       +    L     +L     +   I + G TD  P       N  L  
Sbjct: 133 LFRFGSANSNDISAQGREALSSFASMLKKENAAQRHIIVTGFTD--PI-GSDSSNMALGQ 189

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL-------KIASDPMNSANRRIDILVEDR 341
            RA +   +L+  G++   I+  S     ++               ++ RR+ I VE++
Sbjct: 190 RRAEAVKALLIAQGMNAANITAQS-MGESQVNTNCSGSLQEQKACYASERRVIISVENK 247


>gi|229495751|ref|ZP_04389479.1| outer membrane protein HMP [Porphyromonas endodontalis ATCC 35406]
 gi|229317325|gb|EEN83230.1| outer membrane protein HMP [Porphyromonas endodontalis ATCC 35406]
          Length = 398

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S    P   +VL +I + +  S + I++ G  D       A  N  LS  RA +  
Sbjct: 303 FKFDSDKLTPNQEIVLYEIAKFVKESNQPITVIGFAD---VTGNANYNLALSERRAKAVA 359

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            +L         +  +                + N R+ I+
Sbjct: 360 NILTTQYDVPSDMINVEWQGETEQFD----TRAWN-RVVIV 395


>gi|226939541|ref|YP_002794614.1| RmpM [Laribacter hongkongensis HLHK9]
 gi|226714467|gb|ACO73605.1| RmpM [Laribacter hongkongensis HLHK9]
          Length = 210

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   PE    L  +   +         + + G+TD   +    + N  LS  RA
Sbjct: 93  LFGFDKSTVTPEGKQALVDVANKIKSKGAKLQGVEVLGYTD---YIGTEKYNMALSERRA 149

Query: 293 YSAYQVLMKSGVSEDRISKISGFAH 317
            +   VL++ G    +I+  +G   
Sbjct: 150 AAVKNVLVEMGADPAKITS-AGRGE 173


>gi|148257384|ref|YP_001241969.1| hypothetical protein BBta_6138 [Bradyrhizobium sp. BTAi1]
 gi|146409557|gb|ABQ38063.1| hypothetical protein BBta_6138 [Bradyrhizobium sp. BTAi1]
          Length = 268

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 237 FDKSSSIPLP----ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           F++ S+ P P     ++ +LQ    +  H    + + GHTDA         N  LS  RA
Sbjct: 155 FERGSTRPNPADVKRSLPILQ--SALARHGDAAVLVEGHTDA---SGSEDLNVLLSYSRA 209

Query: 293 YSAYQVLMKSGVSEDRI-SKISGFAHHR 319
            +  ++L + G++  RI  + +G    R
Sbjct: 210 KAVAELLKRDGIAAHRITVRAAGAGEAR 237


>gi|117924306|ref|YP_864923.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608062|gb|ABK43517.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1]
          Length = 255

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKS 240
            +A + + R      +I+     L        +     R    +S  +     +  F   
Sbjct: 44  AVASRDEVRQNQRKDEITKVFDALEQSAAQSNLPLVINRKEQTLSFGNSARFELDSFYL- 102

Query: 241 SSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           S+    +    +  + +V           + I G+TD          N RLS++RA +  
Sbjct: 103 SAQVRQQLKDFVPMLLKVRKKGEGKWLKRVHIEGYTDDI---GTYLYNVRLSMNRAQAVL 159

Query: 297 QVLMKSGVSE------DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             LM++ VSE       R+  I G A   ++ + +      RR++I +E
Sbjct: 160 CTLMEAEVSEAQRRELQRMIIIDGAASTSIRSSREES----RRVEIRLE 204


>gi|91218699|ref|ZP_01255595.1| probable outer membrane protein [Psychroflexus torquis ATCC 700755]
 gi|91183150|gb|EAS69597.1| probable outer membrane protein [Psychroflexus torquis ATCC 700755]
          Length = 197

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD       P+  V LQKI   +       I +R HTD+   R     N  LS  RA + 
Sbjct: 97  FDLDKFQIRPDAEVELQKIIVAMKSYPNLRIDVRSHTDS---RAGDEYNQILSNKRAKAT 153

Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANR 332
              ++ KS +S +RIS   G+   +L          S+  ++ NR
Sbjct: 154 INYIIEKSRISSERISG-RGYGESQLVNKCSNGIDCSESEHALNR 197


>gi|209546851|ref|YP_002278769.1| OmpA/MotB domain-containing protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538095|gb|ACI58029.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 184

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L  +   ++ ++G  D S   +       LS  RA
Sbjct: 74  RIYFKQDSAALDSVAMATLDNQANWLNRNPTWLLKLQGFADDSGSASKMET---LSQKRA 130

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334
            +A   L   GV   R+    G+ + R  +      S    NRR+
Sbjct: 131 DAAMAYLASKGVDTKRMWA-KGYGNDRE-VRDCTERSCKVQNRRV 173


>gi|148974875|ref|ZP_01811855.1| outer membrane protein [Vibrionales bacterium SWAT-3]
 gi|145965384|gb|EDK30633.1| outer membrane protein [Vibrionales bacterium SWAT-3]
          Length = 180

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 18/147 (12%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP---LPETIVVLQK-----IGE 257
           L  D I +  L        +I I  Q +   +DK++       P  +  L +     + +
Sbjct: 40  LERDEIPQNELLNKESE--VIQIAAQDDVCFYDKATQSLVLNYPINVYKLDESHKQVLEQ 97

Query: 258 VLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            L+   +   I I GH D+         N  LS  RA      L +      RI + + +
Sbjct: 98  YLSLVDDKSKIFIEGHADSL---GSESYNKALSSRRAGQVTSYLKEDLRQGSRIVEYA-Y 153

Query: 316 AHHRL--KIASDPMNSANRRIDILVED 340
                  K A + +   NRR+ I V+ 
Sbjct: 154 GESAPICKAADNKVTGCNRRVVITVKS 180


>gi|134297038|ref|YP_001120773.1| cytochrome c oxidase subunit II [Burkholderia vietnamiensis G4]
 gi|134140195|gb|ABO55938.1| cytochrome c oxidase, subunit II [Burkholderia vietnamiensis G4]
          Length = 528

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD       A  N  L+  RA + 
Sbjct: 432 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDK---SGSADANAELAKRRAQAV 488

Query: 296 YQVLMKSGVSEDRIS-----KISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 489 RDALKAAGVAEDHIVLKKPETITGGADAKEA----------RRVEI 524


>gi|325982085|ref|YP_004294487.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212]
 gi|325531604|gb|ADZ26325.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212]
          Length = 225

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
           +FD  SS   P  I  L +    +      + I  G+ D     +    N  LSL RA S
Sbjct: 111 LFDFDSSKLKPNGIQSLNEFVTGIEGVKYDLIIAVGYAD--RIGSDEY-NKALSLRRAES 167

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-----------NRRIDILV 338
               L+  G+    I  + G         +                 +RR++I V
Sbjct: 168 VKSHLVSRGIDPSLIF-VDGKGEANPVTGNSCAGERKSKALIECLAPDRRVEIEV 221


>gi|251733445|emb|CAR82472.1| pal [Bradyrhizobium elkanii]
          Length = 87

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
              +   P+    L K  + L  +      +I GH D    R     N  L   RA S  
Sbjct: 1   SDQTDLSPQATATLDKQAQWL-QTYNRYSFTIEGHADE---RGTREYNIALGARRAQSVR 56

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325
             L   G+   R+  IS      + + +D
Sbjct: 57  AYLASRGIDPSRMRTISYGKERPVAVCND 85


>gi|225872880|ref|YP_002754337.1| outer membrane protein A [Acidobacterium capsulatum ATCC 51196]
 gi|225792630|gb|ACO32720.1| outer membrane protein A [Acidobacterium capsulatum ATCC 51196]
          Length = 263

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 17/203 (8%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
              +  + +  E  +   ++    ++++K     +         A +        A++  
Sbjct: 34  SQTQPLVEQTHELNQVTAQNHREIQNVDKRAQSGIQQAQGAAQTAQQSADSANQSAQQAM 93

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
           S        N + GV+        +  I        F  + ++        L ++   + 
Sbjct: 94  SQT------NALSGVVSNLDNYQPVAQINVT-----FGFNKAVLSRGDKSKLDQLASQMG 142

Query: 261 HSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKIS-GFAH 317
            +   I ++ G TD++        N +LS  RA +  + L  +  V   +   +  G A 
Sbjct: 143 STKGYIVALTGSTDST---GTKAYNDQLSQRRAQAVERYLAATYHVPPYKFYVLGLGKAD 199

Query: 318 HRLKIASDPMNSANRRIDILVED 340
                 +    + NRR+ + +  
Sbjct: 200 EVASNRTASGRAKNRRVQVQLLT 222


>gi|91217502|ref|ZP_01254461.1| OmpA/MotB family protein [Psychroflexus torquis ATCC 700755]
 gi|91184387|gb|EAS70771.1| OmpA/MotB family protein [Psychroflexus torquis ATCC 700755]
          Length = 235

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFE---TTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
           ++A KI      +      K +L E    T  G++ +I    ++ M +KS  + L   I 
Sbjct: 95  EIASKIDKIGESITNIESFKRILQEKKQLTPIGLMFTI----DSKMINKSDFVLLDFYIE 150

Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI- 309
             Q + +        + I G+T     ++    N  LS  R YS  + L+  G+   +I 
Sbjct: 151 QYQALNK------GYLLIEGYTCDLGTKSH---NLELSERRNYSVEKYLIAKGIPSSKIK 201

Query: 310 SKISG--FAHHRLKIASDPMNSANRRIDI-LVEDRQ 342
           +K  G  F   R  I  +     NRR+++ ++E ++
Sbjct: 202 TKSYGEKFFERRPII--EESRIENRRVNLSIIESKK 235


>gi|307266869|ref|ZP_07548390.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918116|gb|EFN48369.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 230

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 23/166 (13%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-----IDQRNTPMFDKSSS 242
           +K ++ DL    +  +  L+ +     +          IS       D+    + ++   
Sbjct: 46  QKAKVDDLIGVRARIIDQLLKEFSNSDMTLNIDPQTGAISFSEGVFFDKDKFELKEEGKR 105

Query: 243 IPL---PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA-YSAYQV 298
                 P  + +L             I + GHTD +        N  LS  RA      +
Sbjct: 106 YLNEFIPRYLSILMD--PRFKKYISQIIVEGHTDDT---GDYMYNLELSQKRAFEVVRYI 160

Query: 299 LMKS--GVS----EDRISKIS--GFAHHRLKIASDP-MNSANRRID 335
           L  +  G+      D +S I+  G ++ +L I +       +RR++
Sbjct: 161 LQSNIKGIDSKTKADLMSYITANGRSYSQLIIENGKVNRQKSRRVE 206


>gi|163745061|ref|ZP_02152421.1| OmpA domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381879|gb|EDQ06288.1| OmpA domain protein [Oceanibulbus indolifex HEL-45]
          Length = 519

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S     ++   +Q++   L         +   G +D       AR N  ++L RA 
Sbjct: 412 FEAGSIRLDAQSRSNVQQLARALEQGQYDARRLMFVGFSDGE---GAARANREIALRRAE 468

Query: 294 SAYQVLMKSGVSED--RI-SKISGFAHHRLKIASDPM--NSANRRIDILV 338
           +  + +  + V+ +  RI  ++  F         D      ANRR+++ V
Sbjct: 469 AVQRAVSAAAVTANLSRIDLRVDAFGEAMPIACDDSEWGRQANRRVEVWV 518


>gi|83591609|ref|YP_425361.1| hypothetical protein Rru_A0269 [Rhodospirillum rubrum ATCC 11170]
 gi|83574523|gb|ABC21074.1| hypothetical protein Rru_A0269 [Rhodospirillum rubrum ATCC 11170]
          Length = 293

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 236 MFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S    P    ++  +   L      + + G+ D             L+++RA +
Sbjct: 160 FFEPGESGLGDPTARSLVSSVAHTLQSGNLRVRVTGYADPGELSGNTPQAVDLAMERARA 219

Query: 295 AYQVLMKSGVSEDRI---SKISGFAHHRLKIASDPMNS----ANRRIDILVED 340
               L + GVS   +   +++S       +  SD  ++      RR+++++ED
Sbjct: 220 VAWSLQQEGVSAGDVILSARVS--VDPPTQTGSDAEDALAATRERRVEMIIED 270


>gi|150397824|ref|YP_001328291.1| peptidoglycan-associated lipoprotein [Sinorhizobium medicae WSM419]
 gi|150029339|gb|ABR61456.1| Peptidoglycan-associated lipoprotein [Sinorhizobium medicae WSM419]
          Length = 176

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + LA      ++I GH D    R     N  L   R
Sbjct: 67  DRIFFDTDSTSIRADAQTTLDRQAQWLAKYPNYAVTIEGHADE---RGTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GV  +R+  IS +   +     D ++  S NRR
Sbjct: 124 AAATRDYLVSRGVPGNRMRTIS-YGKEKPVAVCDDISCWSQNRR 166


>gi|320531947|ref|ZP_08032850.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135840|gb|EFW27885.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 227

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS        VL  I +         +++ GHTD+         N  LS  RA + 
Sbjct: 121 FDVDSSALTDRAKQVLDDIVKRWNGKPPATVTVVGHTDSVA---DDAHNQTLSEQRAKAV 177

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--------SDPMNSANRRIDI 336
              L    V    +   SG        +        ++   +ANR +D+
Sbjct: 178 ADYLTSK-VPSLNVQS-SGKGESEPVASETNADGSVNEAGKAANRHVDV 224


>gi|255321985|ref|ZP_05363135.1| OmpA family protein [Campylobacter showae RM3277]
 gi|255301089|gb|EET80356.1| OmpA family protein [Campylobacter showae RM3277]
          Length = 192

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
           D++   +  + G+   N    ++ ++ R   ++ SI  Q  T  FD        +    +
Sbjct: 47  DMSADANQNMGGM---NSSDNMMSDSERLQQLISSIEGQVQTVYFDFDKFNIKGDMQSAI 103

Query: 253 QKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
                +   S      + + G+ D          N+ L L RA +A   L+K GV+ DRI
Sbjct: 104 NTNAGLFNQSEAQALSVKVEGNCDEW---GTDEYNYALGLKRAKAAKDALVKQGVAADRI 160

Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILVED 340
           + +S +          +   ++ NRR +  V  
Sbjct: 161 TVVS-YGESNPVCTDKTKACDAQNRRAEFKVLP 192


>gi|225873020|ref|YP_002754479.1| ompA family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791412|gb|ACO31502.1| ompA family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 24/248 (9%)

Query: 89  PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148
           PP      ++DLS  +   +      +    Q   +   +   +    S  +     S+ 
Sbjct: 207 PPMHMPAKQVDLSCTQSAEQVPPGEPLEIIAQAITWPGNDAVDYDWHASAGTVQGSGSMV 266

Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208
                G +         +   ++            +   +K      AK I+ T+    A
Sbjct: 267 SIETAGLEPGTYHVYGTAHLADDAGVHSDCQVSFTIVPPQK------AKVITRTIVEKPA 320

Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267
            N    + FE        +I D      FD +     P+    +      L    +  I+
Sbjct: 321 TNNPAMLDFEK-------NIQD----AFFDYNQYNLRPDAQSAIAHDASYLESHPDIHIT 369

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           I G  D         + W L L RA +  + L K G+   R++ +  +   +   +    
Sbjct: 370 IAGFADER--GTAEYNIW-LGLQRALAVRRALAKDGIDMGRMN-VLSYGKEKQFCSDQTP 425

Query: 328 N--SANRR 333
                NRR
Sbjct: 426 ACFQQNRR 433


>gi|34557279|ref|NP_907094.1| hypothetical protein WS0889 [Wolinella succinogenes DSM 1740]
 gi|34482995|emb|CAE09994.1| Z5895 PROTEIN [Wolinella succinogenes]
          Length = 236

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 34/186 (18%)

Query: 186 MKRKKRLQDLAKKIS------STLSGLVADNIVKGVLFETTRTGILI----SIIDQRNTP 235
            K+ + L++L  KI        TL   + ++++K    + T     I    +I  +    
Sbjct: 40  EKKNRELRELNDKIGDVAKTFETLQLELYNDLIKEFSKDLTSWNATIDPDNTIRFKEPDV 99

Query: 236 MFDKSSSIPLPETIVVLQKI----GEVLAHSTEV-----ISIRGHTD-----ASPFRNIA 281
           +FD   S       VVL        ++L+          I I GHT      A       
Sbjct: 100 LFDSGKSQVKERFKVVLDDFFPRYVKILSQEKYKGDIEEIRIEGHTSSEWLNAKTLEERY 159

Query: 282 RDNWRLSLDRAYSAYQV---LMKSGVSED---RISKISGFAHHRLKIASDPMNSANRRID 335
             N  LS  RA+   +    L +    +D   ++ + +G +  +   + +      RR++
Sbjct: 160 LGNAALSQARAFEVLKYCFALERIKGEQDWLIKVLRANGLSFAKPLDSEEHS----RRVE 215

Query: 336 ILVEDR 341
                R
Sbjct: 216 FRTLTR 221


>gi|217970277|ref|YP_002355511.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
 gi|217507604|gb|ACK54615.1| OmpA/MotB domain protein [Thauera sp. MZ1T]
          Length = 756

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-------VISIRGHTDASPFRNIARDNWRLSL 289
           FD  S       I  L         +          + I GHT A         N  LS 
Sbjct: 505 FDYDSDALTGTAIATLNGFIARFNGAVGNAAHQEVRVEIVGHTSA---AGSEHYNVDLSR 561

Query: 290 DRAYSAYQVLMKSGVS--EDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339
            RA +    L + G +   +R+  +  G A       + P  ++++R D++V+
Sbjct: 562 RRAEAVRTHLERHGFANTANRVHIRARGEAE---ADPTQPRRASDQRADLVVD 611


>gi|121582849|ref|YP_973291.1| hypothetical protein Pnap_4266 [Polaromonas naphthalenivorans CJ2]
 gi|120596111|gb|ABM39549.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 235

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 32/173 (18%)

Query: 187 KRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            R+       K + + ++  V A    KGV  +  R      +ID  +   F   SS+  
Sbjct: 52  AREALEAQHKKDVDNCMAQAVTAAERHKGVKVDLDRR-----VIDFGDRARFAFGSSVLA 106

Query: 246 PETIVVLQKIGEVL---------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA- 295
           PE   VL++    L             + + + G+TD          N  LSL R+    
Sbjct: 107 PEQEAVLRRFVPELLSMAQTPSCKRVLKRVVVEGYTDR---AGTYLGNLNLSLMRSQRVL 163

Query: 296 --------YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILVE 339
                      L ++     R +  + GFA      +S      +RR+++ +E
Sbjct: 164 CAMFTTSGADALTEAQKDAVRDVFLVGGFA----FNSSKDTAEESRRVEMRLE 212


>gi|110635499|ref|YP_675707.1| OmpA/MotB [Mesorhizobium sp. BNC1]
 gi|110286483|gb|ABG64542.1| OmpA/MotB [Chelativorans sp. BNC1]
          Length = 172

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+   +    L +  + L       +++ GH D    R     N  L   R
Sbjct: 63  DRIFFDTDSSVIRADAQATLARQAQWLNQYPSYSVTVEGHADE---RGTREYNLALGARR 119

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +A   L+  GV+ +RI  IS +   R     D ++  S NRR  + V +  G
Sbjct: 120 AAAARDFLVSRGVAANRIQTIS-YGKERPVAVCDDISCWSQNRR-AVTVLNGAG 171


>gi|22126930|ref|NP_670353.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis KIM 10]
 gi|45440865|ref|NP_992404.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108806600|ref|YP_650516.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Antiqua]
 gi|108813033|ref|YP_648800.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Nepal516]
 gi|145599836|ref|YP_001163912.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Pestoides F]
 gi|149366875|ref|ZP_01888909.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis
           CA88-4125]
 gi|162418864|ref|YP_001605923.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Angola]
 gi|165924580|ref|ZP_02220412.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938361|ref|ZP_02226919.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011606|ref|ZP_02232504.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211496|ref|ZP_02237531.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400048|ref|ZP_02305566.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419890|ref|ZP_02311643.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424166|ref|ZP_02315919.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218928293|ref|YP_002346168.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis CO92]
 gi|229841062|ref|ZP_04461221.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843166|ref|ZP_04463312.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229894003|ref|ZP_04509189.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Pestoides A]
 gi|229903473|ref|ZP_04518586.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Nepal516]
 gi|270487253|ref|ZP_06204327.1| peptidoglycan-associated lipoprotein [Yersinia pestis KIM D27]
 gi|294503130|ref|YP_003567192.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis Z176003]
 gi|21959969|gb|AAM86604.1|AE013906_8 peptidoglycan-associated lipoprotein [Yersinia pestis KIM 10]
 gi|45435723|gb|AAS61281.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776681|gb|ABG19200.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis Nepal516]
 gi|108778513|gb|ABG12571.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis Antiqua]
 gi|115346904|emb|CAL19791.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis CO92]
 gi|145211532|gb|ABP40939.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis Pestoides
           F]
 gi|149291249|gb|EDM41324.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis
           CA88-4125]
 gi|162351679|gb|ABX85627.1| peptidoglycan-associated lipoprotein [Yersinia pestis Angola]
 gi|165913739|gb|EDR32358.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923640|gb|EDR40772.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989554|gb|EDR41855.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207267|gb|EDR51747.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962631|gb|EDR58652.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050756|gb|EDR62164.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057015|gb|EDR66778.1| peptidoglycan-associated lipoprotein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679243|gb|EEO75346.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Nepal516]
 gi|229689513|gb|EEO81574.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229697428|gb|EEO87475.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229703888|gb|EEO90901.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis Pestoides A]
 gi|262361166|gb|ACY57887.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis D106004]
 gi|262365277|gb|ACY61834.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis D182038]
 gi|270335757|gb|EFA46534.1| peptidoglycan-associated lipoprotein [Yersinia pestis KIM D27]
 gi|294353589|gb|ADE63930.1| peptidoglycan-associated lipoprotein Pal [Yersinia pestis Z176003]
 gi|320014265|gb|ADV97836.1| peptidoglycan-associated outer membrane lipoprotein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 168

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
           SG+ A    +     ++     + + + +   +  F         +   +L      L  
Sbjct: 33  SGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRS 92

Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319
           +  + + + GH D    R     N  L   RA +    L   GVS D+IS +S G     
Sbjct: 93  NPSDKVVVEGHADE---RGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPA 149

Query: 320 LKIASDPMNSANRR 333
           +    +   + NRR
Sbjct: 150 VLGHDEAAFAKNRR 163


>gi|46398701|gb|AAS92036.1| IcmN protein [Legionella pneumophila]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 31  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 87

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 88  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 144

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 145 PITSYTLGGDRSPNARVEI 163


>gi|46398707|gb|AAS92039.1| IcmN protein [Legionella pneumophila]
          Length = 168

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 29  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 85

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 86  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 142

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 143 PITSYTLGGDRSPNARVEI 161


>gi|46398699|gb|AAS92035.1| IcmN protein [Legionella pneumophila]
          Length = 166

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 27  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 83

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 84  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 140

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 141 PITSYTLGGDRSPNARVEI 159


>gi|46398691|gb|AAS92031.1| IcmN protein [Legionella pneumophila]
          Length = 189

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 50  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 106

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 107 KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 163

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 164 PITSYTLGGDRSPNARVEI 182


>gi|46398709|gb|AAS92040.1| IcmN protein [Legionella pneumophila]
          Length = 175

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 36  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 92

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 93  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 149

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 150 PITSYTLGGDRSPNARVEI 168


>gi|54293440|ref|YP_125855.1| hypothetical protein lpl0489 [Legionella pneumophila str. Lens]
 gi|53753272|emb|CAH14719.1| hypothetical protein lpl0489 [Legionella pneumophila str. Lens]
          Length = 189

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 50  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 106

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 107 KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 163

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 164 PITSYTLGGDRSPNARVEI 182


>gi|52840692|ref|YP_094491.1| LphA (DotK) [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148360936|ref|YP_001252143.1| hypothetical protein LPC_2896 [Legionella pneumophila str. Corby]
 gi|296105998|ref|YP_003617698.1| LphA (DotK) [Legionella pneumophila 2300/99 Alcoy]
 gi|2897615|emb|CAA75327.1| LphA protein [Legionella pneumophila]
 gi|52627803|gb|AAU26544.1| LphA (DotK) [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148282709|gb|ABQ56797.1| LphA (DotK) [Legionella pneumophila str. Corby]
 gi|295647899|gb|ADG23746.1| LphA (DotK) [Legionella pneumophila 2300/99 Alcoy]
 gi|307609255|emb|CBW98722.1| Dot/Icm secretion system protein [Legionella pneumophila 130b]
          Length = 189

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 50  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 106

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 107 KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 163

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 164 PITSYTLGGDRSPNARVEI 182


>gi|259090555|gb|ACV91900.1| OprL [Pseudomonas fluorescens]
 gi|259090583|gb|ACV91914.1| OprL [Pseudomonas fluorescens]
 gi|309244355|gb|ADO52182.1| OprL [Pseudomonas poae]
 gi|309244357|gb|ADO52183.1| OprL [Pseudomonas poae]
 gi|309244359|gb|ADO52184.1| OprL [Pseudomonas trivialis]
 gi|309244361|gb|ADO52185.1| OprL [Pseudomonas trivialis]
 gi|309244363|gb|ADO52186.1| OprL [Pseudomonas trivialis]
 gi|309244365|gb|ADO52187.1| OprL [Pseudomonas trivialis]
 gi|309244367|gb|ADO52188.1| OprL [Pseudomonas trivialis]
 gi|309244369|gb|ADO52189.1| OprL [Pseudomonas trivialis]
 gi|309244371|gb|ADO52190.1| OprL [Pseudomonas sp. 'ribotype C P501-02']
 gi|309244373|gb|ADO52191.1| OprL [Pseudomonas sp. 'ribotype C P515-18']
 gi|309244375|gb|ADO52192.1| OprL [Pseudomonas sp. 'ribotype C P527-22']
          Length = 157

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 67  FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI 322
           + L+  GV+  ++  +S +   R   
Sbjct: 124 RYLVLQGVAPGQLELVS-YGKERPVA 148


>gi|326798576|ref|YP_004316395.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
 gi|326549340|gb|ADZ77725.1| OmpA/MotB domain protein [Sphingobacterium sp. 21]
          Length = 462

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS+    +   L ++   L  S   +++ G    +        N++L LDRA S  
Sbjct: 363 FEFDSSVLKTSSYPTLDQVSSDLRASGATLTLEG---NASEEGTTEYNYQLGLDRANSVK 419

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
             L+ SGV+  +I+ +S     +   ++        NR +
Sbjct: 420 NYLVNSGVAASQINVVS-NGETKPVASNATEEGRQLNRNV 458


>gi|83718717|ref|YP_440984.1| cytochrome c oxidase subunit II [Burkholderia thailandensis E264]
 gi|83652542|gb|ABC36605.1| cytochrome c oxidase, subunit II [Burkholderia thailandensis E264]
          Length = 525

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 429 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAALAKRRAQIV 485

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 486 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 521


>gi|315023748|gb|EFT36751.1| Thrombospondin type 3 repeat:OmpA/MotB [Riemerella anatipestifer
           RA-YM]
          Length = 464

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  +S +  P++   L     ++     ++   + G TD    R  A  N +LS  RA +
Sbjct: 365 FALNSDVIRPQSFGKLDNAANIIKGMNTSKQYLVIGATDT---RGSASYNKKLSQRRADA 421

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM 327
             + L+  GVS   +    G     LK    +P 
Sbjct: 422 VVKYLVNKGVSTS-MLVAEGRGQEDLKYPECNPA 454


>gi|257140362|ref|ZP_05588624.1| cytochrome c oxidase, subunit II [Burkholderia thailandensis E264]
          Length = 507

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 411 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAALAKRRAQIV 467

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 468 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 503


>gi|167617777|ref|ZP_02386408.1| cytochrome c oxidase, subunit II [Burkholderia thailandensis Bt4]
          Length = 517

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA   
Sbjct: 421 FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAALAKRRAQIV 477

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+EDRI       I+G A  +            RR++I
Sbjct: 478 RDALKTAGVAEDRIILKKPETITGGADAKEA----------RRVEI 513


>gi|332882569|ref|ZP_08450181.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679369|gb|EGJ52354.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 399

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 8/239 (3%)

Query: 90  PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149
           P+    N+I L +D  +  N+       T+ +   +  +   F  S        K     
Sbjct: 149 PQIRLSNRIALLLDASLYLNARQNLTYDTHSRATRRGFQGAHFTTSIGLNIALGKEDKHA 208

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVA 208
           D             ++    E+N                      +  +I + L+    A
Sbjct: 209 DWAANSAKDNEDVAKRVAALEDNVSDLKGKVANKQDKMNDANGNGIPDEIENYLNNNYQA 268

Query: 209 DNIVKGVLFETTRTGILISIIDQRN--TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
                     +  +G ++S + ++   +  FD +SS P   +   +  + + L  ++   
Sbjct: 269 KGGSAANNNNSDFSGDVVSDLIKKGYISAYFDFNSSTPQVSSTWAIDIVVKYLKENSGAN 328

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           I I G+ D     N       LS  RA +   +L+K+GVS  RI    G         S
Sbjct: 329 ILISGYADELGGTNYNSS---LSQKRANAVKDILVKAGVSASRI-STEGKGEDTSVDKS 383


>gi|330013026|ref|ZP_08307548.1| OmpA family protein [Klebsiella sp. MS 92-3]
 gi|328533612|gb|EGF60326.1| OmpA family protein [Klebsiella sp. MS 92-3]
          Length = 90

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASD 325
            + GHTD          N  LSL RA S        G    R + ++ G        ++D
Sbjct: 17  RLEGHTDNY---GEDSYNEALSLKRANSVADA-WAEGAHVPRSNLVTRGLGKKYPIASND 72

Query: 326 P--MNSANRRIDILV 338
                + NRR+ +++
Sbjct: 73  TAAGRAENRRVTVVI 87


>gi|258648579|ref|ZP_05736048.1| OmpA family protein [Prevotella tannerae ATCC 51259]
 gi|260851358|gb|EEX71227.1| OmpA family protein [Prevotella tannerae ATCC 51259]
          Length = 691

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            +    +     + V L ++  +L  +   I+I   +    +R     N RLS  RA + 
Sbjct: 523 FYQFDKAAITDSSKVALDRLAALLKDNP-HITIE-LSSNCDYRGTDAYNDRLSQQRAENV 580

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324
              L+  G+   R++   G+     KI S
Sbjct: 581 VHYLISQGIPAARLTP-KGYGKKNPKIVS 608


>gi|221134413|ref|ZP_03560718.1| peptidoglycan-associated lipoprotein [Glaciecola sp. HTCC2999]
          Length = 188

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +    +   VL K    L  +  + I I GHTD+   R     N  L   RA + 
Sbjct: 87  FDFDRATIKADFYNVLDKHAAFLVKNMDQTIVIEGHTDS---RGTPEYNIALGERRAQAV 143

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
               + +GVS  +IS +S F   +  +
Sbjct: 144 ETYFLNAGVSASQISVVS-FGEEKPAV 169


>gi|255692006|ref|ZP_05415681.1| outer membrane porin F [Bacteroides finegoldii DSM 17565]
 gi|260622419|gb|EEX45290.1| outer membrane porin F [Bacteroides finegoldii DSM 17565]
          Length = 380

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + R+  L  +  S    LV     K  +      G++  ++      +F+   S    
Sbjct: 237 DMRDRVNALKGENESLKRDLVEARNKKPEVIVKKEAGLVPRLV-----VVFNIGKSNISK 291

Query: 247 ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
              + ++ + + +  +   + +I G+ D       A  N +LS  RA +   +++   GV
Sbjct: 292 REYMNIEAMAKGIKENPGKVFTITGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGV 349

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              ++ K+            D   S   R+ I+
Sbjct: 350 PASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 378


>gi|260576195|ref|ZP_05844188.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
 gi|259021675|gb|EEW24978.1| OmpA/MotB domain protein [Rhodobacter sp. SW2]
          Length = 507

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+     +   L  +  +LA        + + G +D       A  N  LS  RA 
Sbjct: 388 FEDGSTTLDAHSRDNLADLARLLAVGEFRGQDMVLAGFSDG---AGDAAANLALSQARAE 444

Query: 294 SAYQVLMKS--GVSEDR-ISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
                L K+   + E + + +I  F                 NRR+++ +    G
Sbjct: 445 GVLAALTKATPDLPEGQALPRIEAFGEALPMACDTTAAGRRLNRRVEVWLRPLLG 499


>gi|149198154|ref|ZP_01875201.1| peptidoglycan-associated lipoprotein [Lentisphaera araneosa
           HTCC2155]
 gi|149138756|gb|EDM27162.1| peptidoglycan-associated lipoprotein [Lentisphaera araneosa
           HTCC2155]
          Length = 197

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S+         +Q I E L  +    + I GH D    R     N  LS  RA S 
Sbjct: 92  FAFDSAAVRSAEDAKIQAIAEFLTSNPSFTLVIGGHCDE---RGSDEYNRTLSEKRALSV 148

Query: 296 YQVLMKSGVS-EDRISKISGFAHHRLKI--ASDPMNSANRRID 335
            + L+ +    E RI  ++ +   +  +  A     + NRR +
Sbjct: 149 KESLLSASPDLEMRIETVA-YGEEKPAVVGADSQSYAKNRRAE 190


>gi|187251682|ref|YP_001876164.1| outer membrane protein [Elusimicrobium minutum Pei191]
 gi|186971842|gb|ACC98827.1| Outer membrane protein [Elusimicrobium minutum Pei191]
          Length = 172

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 214 GVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVL----AHST 263
            V+ E T       IID +NT +      F             VL     ++    A++ 
Sbjct: 42  DVVVEETP-----VIIDVQNTEIALRQVNFALDKYNLSDAAKKVLADNAALIKTKTANAA 96

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             I + GH D    R     N  L   RA        + GV    I  +S +   +    
Sbjct: 97  FNIVVEGHCDE---RGTISYNIALGEKRANEVKNYYTRLGVPAKNIVTVS-YGEEKPLCY 152

Query: 324 SDPMN--SANRRIDILVEDR 341
               N  + NRR + ++  +
Sbjct: 153 DATENCYAKNRRAETVLTVK 172


>gi|126463592|ref|YP_001044706.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105256|gb|ABN77934.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 512

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  +    P++   L ++ ++L         + + G +D    R  A+ N  LS +RA 
Sbjct: 401 FEAGTDSLEPQSRESLSELIKLLEIGRFRGHELMLVGFSDG---RGPAKTNLDLSRERAE 457

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           +    L ++ V E     +  F           +     NRR+++ +  
Sbjct: 458 TVAAAL-RAAVPELGPPLVESFGEALPLACDTTVAGRRMNRRVELWLRP 505


>gi|167839513|ref|ZP_02466197.1| ompA family protein [Burkholderia thailandensis MSMB43]
          Length = 276

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 168 DLLPAGRAELDRIAAALQQQYQHIRSVRVTGYTDRL---GTDTYNRQLSLARAETIRAYL 224

Query: 300 MKSGVSEDRISKIS-GFAHH 318
              G+  D I     G A  
Sbjct: 225 TTRGLPGDLIVAQGLGMADP 244


>gi|167572708|ref|ZP_02365582.1| ompA family protein [Burkholderia oklahomensis C6786]
          Length = 276

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 168 DLLPSGRAELDRIAATLQQQYQHIRSVRVTGYTDRL---GTDEYNRQLSLARAETIRSYL 224

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN---------SANRRIDI 336
              G+  D I    G        A  P           + +RR+ I
Sbjct: 225 TTRGLPGDLIVA-QGLGKADPVSAGCPAGRSSEAIACLAPDRRVRI 269


>gi|167565602|ref|ZP_02358518.1| ompA family protein [Burkholderia oklahomensis EO147]
          Length = 276

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 168 DLLPSGRAELDRIAATLQQQYQHIRSVRVTGYTDRL---GTDEYNRQLSLARAETIRSYL 224

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN---------SANRRIDI 336
              G+  D I    G        A  P           + +RR+ I
Sbjct: 225 TTRGLPGDLIVA-QGLGKADPVSAGCPAGRSSEAIACLAPDRRVRI 269


>gi|46398703|gb|AAS92037.1| IcmN protein [Legionella pneumophila]
          Length = 165

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 26  DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 82

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 83  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 139

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 140 PITSYTLGGDRSPNARVEI 158


>gi|294011226|ref|YP_003544686.1| OOP-family protein [Sphingobium japonicum UT26S]
 gi|292674556|dbj|BAI96074.1| OOP-family protein [Sphingobium japonicum UT26S]
          Length = 360

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+   S   P+   +L   +       +  + + G+ D       A  N  LS  RA +
Sbjct: 253 FFEWDKSDITPDAATILDNAVSAYSNCGSAQVMLAGYADR---SGSASYNVGLSQRRADA 309

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
               +   G+ +  I ++  G ++ R++ A       NRR++I
Sbjct: 310 VKAYISSKGIPDGVITTQAFGESNPRVETADGVRELQNRRVEI 352


>gi|313610151|gb|EFR85461.1| chemotaxis protein MotB [Listeria monocytogenes FSL F2-208]
          Length = 98

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 43/98 (43%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + K+       +   +W I Y+D +T+L+A F+V++  ++ D    + +   F    +  
Sbjct: 1   MAKRRKKPQEEHVDETWLIPYSDLLTLLLALFIVLFASSSVDAKKFEQMGNAFKKIVEEG 60

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
              ++    ++  P+  + N +  +++E   K     +
Sbjct: 61  AAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEATEQ 98


>gi|317127354|ref|YP_004093636.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472302|gb|ADU28905.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 232

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP------MFDKSSSIP 244
           +++++ + I   +   V  NI++ +  E + + + + I +           +F+   +  
Sbjct: 48  QIEEMKRTIDQIMG--VRVNIIEDLNEEFSDSSLAVEIDENTGALIFNTDILFEFDEAEL 105

Query: 245 LPETIVVLQKIGE----VLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            PE    L +       VL           I I GH D +        N  LS +RA+S 
Sbjct: 106 KPEGFEFLDEFVPTYLEVLLEGGYDEYISEIIIEGHADRT---GGYLYNLELSQERAFSV 162

Query: 296 YQ 297
            +
Sbjct: 163 AE 164


>gi|146340837|ref|YP_001205885.1| hypothetical protein BRADO3900 [Bradyrhizobium sp. ORS278]
 gi|146193643|emb|CAL77660.1| conserved hypothetical protein; putative outer membrane protein
           with periplasmic-binding domain (ABC-type)
           [Bradyrhizobium sp. ORS278]
          Length = 550

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S          L ++ + L  + +  + + G  D    R   + N RLSL RA S 
Sbjct: 418 FQTNSVELDNLAAPNLFRVMQALRETPQARLLLAGFADR---RGNYQANCRLSLQRAESV 474

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
            Q L   GVS        G+      +  +  +    NRR++I +  
Sbjct: 475 KQSLASLGVSN---VDTRGYCDEVP-VRDNGGDEFEKNRRVEIYLLS 517


>gi|258651985|ref|YP_003201141.1| OmpA/MotB domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258555210|gb|ACV78152.1| OmpA/MotB domain protein [Nakamurella multipartita DSM 44233]
          Length = 478

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNW 285
            I+D      FD   +         L  +   L  ++     + G  D       A+ N 
Sbjct: 372 EILDD-----FDIGKADLKDAHKTQLDSVVTKLQGNAALRAQLGGAAD---LTGGAKVNM 423

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSANRRI 334
            LSL RA +A   L+  G+   R+   S  A   R+   +    S NRR+
Sbjct: 424 ALSLKRAENARDYLVSKGIDAARLEVQSYGADWARVATTTGTNESKNRRV 473


>gi|332300026|ref|YP_004441947.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177089|gb|AEE12779.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 325

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 11/197 (5%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               N +     +G       D  K++ +E           +    +  ++L  L  +++
Sbjct: 133 PAGSNLVVTQGAQGALPTNDADKIKALEEELARLKAAQQNPQRDDDQIAQQLAALRNQLN 192

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VL 259
                     +               + +    +  F  +S +   E    ++ + + V+
Sbjct: 193 ELEKASEKAPVYNYDNRRVIHQDRSRNNVQLSRSVFFKVNSDVLNAEGREAVRNVADFVI 252

Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
                ++ + G+     P      +N +L+  RA S  + L ++GV    I +       
Sbjct: 253 NDPRALVLVYGYASIDGPV---DFNN-KLAAKRAASVIKALQEAGVPAAAIKRYDNGVDT 308

Query: 319 RLKIASDPMNSANRRID 335
                +D      RR+D
Sbjct: 309 TPAKRTDA-----RRVD 320


>gi|226953610|ref|ZP_03824074.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226835644|gb|EEH68027.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 79

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           + K+ E LA        I GHTD +  R +   N RLSL RA S    L+     +    
Sbjct: 4   IAKVAEKLAEYPNATARIEGHTDNTGPRAL---NERLSLARANSVKSALVNEYNVDASRL 60

Query: 311 KISGFAHHRLKIAS 324
              GFA  +    +
Sbjct: 61  STQGFAWDQPIADN 74


>gi|121605878|ref|YP_983207.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594847|gb|ABM38286.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 179

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 19/108 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +         L  + +  A +   + I G  DA+     A  N  L+  RA +  
Sbjct: 86  FASGKADLAAGASEALTDVVKG-AQAGRKLVISGFHDAT---GNAAQNAELAKQRALAVR 141

Query: 297 QVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDILVE 339
             L  +GV+E +I      +I+G             N+  RR++I ++
Sbjct: 142 DALTAAGVAEGQIELKKPEQITGSGP----------NAEARRVEISLQ 179


>gi|332304686|ref|YP_004432537.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172015|gb|AEE21269.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 589

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG---EVL------AHSTEVISIRGHTDA 274
           + IS+I+  +   F  +S+   P+    L  +    + L      A       I G +DA
Sbjct: 465 LKISLINSTSVE-FASNSTQLSPQAEQSLASLASHAKALLSLAGQAQLDVSFIIIGASDA 523

Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
              +     N  LS+ RA +    L + G+  D+++ I 
Sbjct: 524 ---KGSQSYNEVLSIKRAQTVRDTLQEYGLPSDKLNAIG 559


>gi|218264130|ref|ZP_03478022.1| hypothetical protein PRABACTJOHN_03712 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222248|gb|EEC94898.1| hypothetical protein PRABACTJOHN_03712 [Parabacteroides johnsonii
           DSM 18315]
          Length = 487

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  ++     + ++ L ++  V       +++ G  D++       D   LS  RA  
Sbjct: 388 FFELGTARLTDVSQLINLDELARVAKKYGLSVAVIGAADSATGTVDIND--TLSALRADY 445

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSANRRIDILV 338
               L K G+  + I+   + G + +           ANR   I++
Sbjct: 446 IATELNKRGLPAENITKNAMGGISDYSP-------EKANRHTKIML 484


>gi|163758789|ref|ZP_02165876.1| probable peptidoglycan-associated lipoprotein precursor [Hoeflea
           phototrophica DFL-43]
 gi|162284079|gb|EDQ34363.1| probable peptidoglycan-associated lipoprotein precursor [Hoeflea
           phototrophica DFL-43]
          Length = 167

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS+  P+    L +  + L       I++ GH D    R     N  L   R
Sbjct: 58  DRIFFDTDSSVIRPDAASTLDRQAQWLNQYPTYRITMEGHADE---RGTREYNLALGARR 114

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +A Q L   GV+ +RI  IS F   R     D ++  S NRR  + V    G
Sbjct: 115 AAAAKQYLTSRGVAANRIQTIS-FGKERPVAVCDDISCWSQNRR-SVTVLGGAG 166


>gi|332969794|gb|EGK08805.1| OmpA/MotB domain protein [Psychrobacter sp. 1501(2011)]
          Length = 211

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR--DNWRLSLD 290
              +++ SS    E +  L KI  ++    +  +S+  H  + P   + +   N  LSL 
Sbjct: 87  RGFYEEGSSQLTKEYLNELDKIAGLMEKYPDAFMSLEAHI-SEPESKLKKNLSNQTLSLA 145

Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           R       L+ K  +  +RI   + +   R   ++D +     N+R+  ++ +
Sbjct: 146 RVEGVKNYLILKHKIDPNRIRTYT-YGAERPIASNDEVEGIRLNQRVYAVIRN 197


>gi|289577893|ref|YP_003476520.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527606|gb|ADD01958.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9]
          Length = 230

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 23/166 (13%)

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-----IDQRNTPMFDKSSS 242
           +K ++ DL    +  +  L  +     +          IS       D+    + ++   
Sbjct: 46  QKAKVDDLIGVRARIIDQLFKEFSNSDMTLSIDPQTGAISFSEGVFFDKDKFELKEEGKR 105

Query: 243 IPL---PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA-YSAYQV 298
                 P  + +L             I + GHTD +        N  LS  RA      +
Sbjct: 106 YLNEFIPRYLSILMD--PRFKKYISQIIVEGHTDDT---GDYMYNLELSQKRAFEVVRYI 160

Query: 299 LMKS--GVS----EDRISKIS--GFAHHRLKIASDP-MNSANRRID 335
           L  +  G+      D +S I+  G ++ +L I +       +RR++
Sbjct: 161 LQSNIKGIDSKTKADLMSYITANGRSYSQLIIENGKVNRQKSRRVE 206


>gi|222086972|ref|YP_002545506.1| peptidoglycan-associated lipoprotein [Agrobacterium radiobacter
           K84]
 gi|221724420|gb|ACM27576.1| peptidoglycan-associated lipoprotein [Agrobacterium radiobacter
           K84]
          Length = 177

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + LA      I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSTSIRSDASQTLDRQAQWLARYPNYAITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343
           A +    L   GV   R+  IS +   R     D ++  S NRR  + V +  G
Sbjct: 125 AAATKDYLASRGVPAQRMKTIS-YGKERPVATCDDISCWSQNRR-AVTVLNGAG 176


>gi|126728677|ref|ZP_01744492.1| Outer membrane protein, OmpA/MotB family [Sagittula stellata E-37]
 gi|126710607|gb|EBA09658.1| Outer membrane protein, OmpA/MotB family [Sagittula stellata E-37]
          Length = 703

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 25/216 (11%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
                 +  R  +          ++  +  L  D+++ +++      + S    E   + 
Sbjct: 482 DDGTSVETVRAADGRVLRRTRILTDGSRVILFDDTQQAQEVVVGDLPQVSSRGNEERTI- 540

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI--VKGVLFETTRTGILISIIDQRNT 234
              +    A   +     +A ++  T S     NI  V+ ++ E +        +D  N 
Sbjct: 541 -YREGTDAATLEQALASQVAPQVGRTFSLNQIRNIDRVRQLVPEVS--------VDTIN- 590

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSL 289
             F+ +S+   P+    L  +G  L        +EV  I GHTDA         N  LS 
Sbjct: 591 --FETNSAAIRPDEAQELAALGNALKAFIDKNPSEVFLIEGHTDAV---GNYAYNLALSD 645

Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
            RA S    L +   V  + +  + G+    L + +
Sbjct: 646 RRAESVALALTEYFKVPPENMV-LQGYGESDLLVPT 680


>gi|329943865|ref|ZP_08292136.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531571|gb|EGF58407.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 183

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S+        VL +I           +++ GHTD+    + A  N  LS  RA + 
Sbjct: 77  FDVDSATLTDRAKQVLDEIVTRWNGKPPATVTVVGHTDS--VADDAY-NQTLSERRAKAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--------SDPMNSANRRIDI 336
              L    V+   +   SG        +        ++   +ANR +D+
Sbjct: 134 ADYLTSK-VASLNVQS-SGKGESEPVASETNEDGSVNEAGKAANRHVDV 180


>gi|303236743|ref|ZP_07323322.1| OmpA family protein [Prevotella disiens FB035-09AN]
 gi|302482911|gb|EFL45927.1| OmpA family protein [Prevotella disiens FB035-09AN]
          Length = 381

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 183 ILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
            +  + +  L  L  ++  +   +  + D +      ET    +   +I    +  F+  
Sbjct: 229 AINAQHQAALDALNARLRDAEAENARLRDALANQKPTETVSQSVK-ELITTPISVFFNID 287

Query: 241 SSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            +    +  +V +Q + +    +   + + G+ D++   +   + W LS  RA +    L
Sbjct: 288 KTNIASKKDLVNVQALAKYAIDNNNNLLVTGYADSA-TGSAKHNQW-LSEQRAKTVAGEL 345

Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
           +K GVS D+I+++  G       I      S NRR  + V D
Sbjct: 346 VKMGVSSDKITEVGKGGVDTLSPI------SFNRRATVQVTD 381


>gi|239950069|gb|ACS36764.1| outer membrane protein P5 [Ornithobacterium rhinotracheale]
          Length = 301

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +FD   +   P     L  +  E++        + + G+TD          N  LS  RA
Sbjct: 224 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 280

Query: 293 YSAYQVLMKSGVSEDRISKIS 313
            +    ++  GV+   ++ + 
Sbjct: 281 ETVANYIVSKGVNPANVTAVG 301


>gi|85706953|ref|ZP_01038043.1| Outer membrane protein, OmpA/MotB family protein [Roseovarius sp.
           217]
 gi|85668564|gb|EAQ23435.1| Outer membrane protein, OmpA/MotB family protein [Roseovarius sp.
           217]
          Length = 630

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F  +S+   P     L+++G ++        TE+  I G+TDA         N  LS  R
Sbjct: 517 FATASAAIQPSQAENLREMGVMMRDLIAEDPTELFLIEGYTDAV---GAPGYNLLLSDRR 573

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A S      +          + G+    LKI +      NRR+ +
Sbjct: 574 AESVALAFSEYFDVPAENMVVQGYGESYLKIPTQEAERLNRRVAV 618


>gi|229043921|ref|ZP_04191617.1| Excalibur domain protein [Bacillus cereus AH676]
 gi|229127581|ref|ZP_04256572.1| Excalibur domain protein [Bacillus cereus BDRD-Cer4]
 gi|228655927|gb|EEL11774.1| Excalibur domain protein [Bacillus cereus BDRD-Cer4]
 gi|228725452|gb|EEL76713.1| Excalibur domain protein [Bacillus cereus AH676]
          Length = 299

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 6/177 (3%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI D  +    ++  
Sbjct: 68  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALSGISDPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E         K    ++K Q Q  E  +      +Q +  + +  +  ++ ++
Sbjct: 128 KVASNNEEQ----KDSEKKKEADEKTQKQEDEKRLADEQARKQEDEKRQADEQARKQQEE 183

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
             +  D +    +EE   L      K    + +KRL D   +         AD   +
Sbjct: 184 QKRLADEQARKQQEEQKRLADEQARK--QQEEQKRLADEQARKQQEEQKRQADEQAR 238


>gi|198275751|ref|ZP_03208282.1| hypothetical protein BACPLE_01926 [Bacteroides plebeius DSM 17135]
 gi|198271380|gb|EDY95650.1| hypothetical protein BACPLE_01926 [Bacteroides plebeius DSM 17135]
          Length = 358

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 9/156 (5%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT-PMF 237
           + E  L   + K + +    +   ++ L  +   + V+           + D       F
Sbjct: 200 AAEMELVQSQLKSMHEENANLRKQVNTLEEEKNNRPVVTAAAPENEN-RLADAVEYVAFF 258

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           D + +    +  V L+    ++         I G+ D       A  N RLS  RA + Y
Sbjct: 259 DINKAYLSDKEAVNLEAYANLIKKYPENKFVITGYADKQ--TGTAEFNERLSKLRAEAVY 316

Query: 297 QVLMKS-GVSEDRI-SKISGFAHHRLKIASDPMNSA 330
             L+   GV ++++  +  G          +P  S 
Sbjct: 317 NTLVDKYGVDKNQLTMEYRGGVDTM--FQDNPRLSR 350


>gi|313886679|ref|ZP_07820389.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923841|gb|EFR34640.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I]
          Length = 310

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 13/196 (6%)

Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200
               N +     +G       D  K++ +E           +    +  ++L  L  ++ 
Sbjct: 122 PAGSNFVVTQGAQGALPTNDADKIKALEEELARLKATQQNPQRDDDQIAQQLAALRNQLD 181

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VL 259
             L      N     +    R+   + +     +  F  +S +   E    ++ + + V+
Sbjct: 182 E-LEKAPVYNYDNRRVIHQDRSRNNVQLS---RSVFFKVNSDVLNAEGREAVRNVADFVI 237

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                ++ + G+            N +L+  RA S  + L ++GV    I +        
Sbjct: 238 NDPRALVLVYGYAS---IDGPVDFNNKLAAKRAASVIKALQEAGVPAAAIKRYDNGVDTT 294

Query: 320 LKIASDPMNSANRRID 335
               +D      RR+D
Sbjct: 295 PAKRTDA-----RRVD 305


>gi|319762300|ref|YP_004126237.1| ompa/motb domain protein [Alicycliphilus denitrificans BC]
 gi|330825779|ref|YP_004389082.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317116861|gb|ADU99349.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC]
 gi|329311151|gb|AEB85566.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601]
          Length = 173

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    +         L +  + +    +   + G  DA+     A  N  LS  RA + 
Sbjct: 77  FFASGKADLAAGASEALAEAVKGVLEGGKTAVVSGFHDAT---GDAAVNAELSKQRALAV 133

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILV 338
              L   GV E+++         + ++      N+  RR+++++
Sbjct: 134 RDALKALGVPEEKVEL------KKPEVTQGSGSNAEARRVEVML 171


>gi|298386438|ref|ZP_06995994.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
 gi|298260815|gb|EFI03683.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14]
          Length = 364

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284
           + I   +    F  +S+    +    +  + E L  HS   +S+ G+ D          N
Sbjct: 256 VVIEPLKQNIFFALNSAKIQDDQQAKISSLVEYLEKHSAAKVSVTGYADKE--TGNPNIN 313

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGF-AHHRLKIASDPMNSANRRIDILV 338
             LS  RA +  ++L   GV+ DRI  + G+                  R+ I +
Sbjct: 314 MTLSEKRAKNVIEMLKAKGVAADRI--VIGYKGDTVQPYQK----PEENRVCICI 362


>gi|325525379|gb|EGD03214.1| cytochrome c oxidase, subunit II [Burkholderia sp. TJI49]
          Length = 534

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      +        AH    +++ G TD +     A  N  L+  RA + 
Sbjct: 438 FETGKSTLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 494

Query: 296 YQVLMKSGVSEDRIS-----KISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 495 RDALKAAGVAEDHIVLKKPETITGGADAKEA----------RRVEI 530


>gi|255019464|ref|ZP_05291566.1| OmpA/MotB [Acidithiobacillus caldus ATCC 51756]
 gi|254971096|gb|EET28556.1| OmpA/MotB [Acidithiobacillus caldus ATCC 51756]
          Length = 93

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335
                 N +LS  RA S  Q L + GV  DR+  + G +++    ++        N+R++
Sbjct: 22  VGTYAYNLKLSKLRAESVAQYLERHGVPRDRMV-LKGHSYNDPVASNATPEGRFLNQRVE 80

Query: 336 I 336
           I
Sbjct: 81  I 81


>gi|78777594|ref|YP_393909.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
 gi|78498134|gb|ABB44674.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251]
          Length = 176

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           N+ L L RA S  + L+  GV  +RIS +S F               + NRR+D  +  
Sbjct: 119 NFALGLKRAESVKKALVAEGVDANRISMVS-FGESNPTCTDKTKECWAENRRVDFKLLP 176


>gi|42768700|gb|AAS45565.1| putative outer membrane protein [Aeromonas hydrophila]
          Length = 344

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F         E +  L  + + +           + G+TD     +    N +LS  RA
Sbjct: 224 LFAFGKDSLKSEGVAALNGLYQQIVEFQPKDGNAVVVGYTD--RIGSDDY-NQKLSEARA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  + G         +
Sbjct: 281 RTVANFLVSKGMAASKV-AVEGRGEANPVTGT 311


>gi|258593271|emb|CBE69610.1| exported protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 224

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               FD   S    E    L +    L  +    I I GH D    R     N  L   R
Sbjct: 119 KDIFFDFDRSSIRTEMAKGLAENVRWLKANPTASIIIEGHCDE---RGTVEYNQALGQRR 175

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339
           A S    L+++G+S  ++ K+  +   R        ++   NRR  ++++
Sbjct: 176 AMSVKSYLVEAGISARKM-KVVSYGKERPFATGHDESAWKWNRRAHLVLQ 224


>gi|41349559|emb|CAF21861.1| major outer membrane protein [Pseudomonas putida]
          Length = 287

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+  P +   ++ + + +        ++ GHTD+         N +LS  RA + 
Sbjct: 220 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 276

Query: 296 YQVL 299
            QVL
Sbjct: 277 KQVL 280


>gi|254487991|ref|ZP_05101196.1| OmpA domain protein [Roseobacter sp. GAI101]
 gi|214044860|gb|EEB85498.1| OmpA domain protein [Roseobacter sp. GAI101]
          Length = 520

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S     ++   +Q++   L         +   G +D        R N  ++L RA 
Sbjct: 413 FEAGSIRLDAQSRSNVQQLARALEIGQYDARRLLFVGFSDGD---GAGRANREIALRRAE 469

Query: 294 SAYQVLMKSGVSE--DRI-SKISGFAHHRLKIASDP--MNSANRRIDILV 338
           +  + ++K+ V+   DR+   +  F         D      ANRR+++ V
Sbjct: 470 AVRRAVIKAAVTANLDRVTLDVDAFGEAMPMACDDSAWGRQANRRVEVWV 519


>gi|253570599|ref|ZP_04848007.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|251839548|gb|EES67631.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 14/148 (9%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
              +++L +++ + +  L   +A+  V+           +I  I   N   F  + S   
Sbjct: 253 ESMRRKLNEMSAE-NERLKKALAEGNVQDART-------IIKKIAAANLVTFPINKSKLD 304

Query: 246 PETIVVLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS- 302
            E    L  + E++       +  I G+ DA       + N +LS +RA++ Y  L+K  
Sbjct: 305 NEARANLGMLAEIIKSGDPEATYTITGYADAG--TGSKKGNEKLSKERAHAVYDCLVKEF 362

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA 330
           GV E ++ +I           +DP  S 
Sbjct: 363 GVKESQL-RIDYKGGVENMFYNDPRLSR 389


>gi|294142661|ref|YP_003558639.1| OmpA family protein [Shewanella violacea DSS12]
 gi|293329130|dbj|BAJ03861.1| OmpA family protein [Shewanella violacea DSS12]
          Length = 334

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F   SS         L ++  V   +    I + G  D+   R  A  N +LS  RA  
Sbjct: 224 LFGFDSSELSTTAQAKLDEVVRVSKLNDNDTILLIGQADS---RGDAGYNQKLSEARAQH 280

Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
               L+  GV   ++  + SG        + D   +  RR+ I +  
Sbjct: 281 VEDYLVSHGVEVQQLGHQASGEQDSHASSSQD--RAQERRVIITLTS 325


>gi|90418977|ref|ZP_01226888.1| peptidoglycan-associated lipoprotein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337057|gb|EAS50762.1| peptidoglycan-associated lipoprotein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 177

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +    L   +   I I GH D    R     N  L   R
Sbjct: 68  DRVFFDTDSTSLRADAQQTLTQQARWLNQYSQYSIVIEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L++ GV  +R+  IS +   R     D ++  S NRR
Sbjct: 125 AAATRDYLVQQGVPANRMRTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|254459885|ref|ZP_05073301.1| OmpA family protein [Rhodobacterales bacterium HTCC2083]
 gi|206676474|gb|EDZ40961.1| OmpA family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 291

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289
           ++    F           I   + I  +      V I + GH+D          N RLS 
Sbjct: 50  EQARVYFPAGGLTLDESGIAQARLIAALAQDCNGVEIIVEGHSDP---SGDPAVNLRLSQ 106

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
            RA    Q L  +G+      +  G    R    +   + A  +RR++ +V
Sbjct: 107 KRAEQVIQRLGATGLDISNF-RAEGLGSARPSNVTGSESDAYYDRRVEFVV 156


>gi|153809080|ref|ZP_01961748.1| hypothetical protein BACCAC_03388 [Bacteroides caccae ATCC 43185]
 gi|149128413|gb|EDM19632.1| hypothetical protein BACCAC_03388 [Bacteroides caccae ATCC 43185]
          Length = 395

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 228 IIDQRNTP---MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283
           I D    P    F   S    P+  + L  +   +        +I G+ D++        
Sbjct: 285 ITDPNIAPRTVFFKIGSDRLSPQEEMNLSYLANRIKEFPGTTYTINGYADSATGTPAF-- 342

Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316
           N +LSL RA     +L+K  G+  D +   +G  
Sbjct: 343 NEKLSLKRAQVVKDLLVKKYGIPADNLKVAAGGG 376


>gi|162454212|ref|YP_001616579.1| thrombospondin-like alanine-rich exported protein [Sorangium
           cellulosum 'So ce 56']
 gi|161164794|emb|CAN96099.1| thrombospondin-like alanine-rich exported protein [Sorangium
           cellulosum 'So ce 56']
          Length = 674

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 15/233 (6%)

Query: 99  DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158
           D   D     +  +   G  + +        ++    +        N + +  +      
Sbjct: 423 DGFQDSDGCPDPDNDGDGILDARDTCPMGAEDVDGFKDDDGCPDPDNDIDQVPDASDQCP 482

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
              +       ++        ++ +        +       + T+ G    +        
Sbjct: 483 LVAEDRDGFQDDDGCPERDNDEDGVADAADACPMT------AETIDGTNDADGCPEPAGR 536

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI-RGHTDASP 276
           +        ++       F  +S+   P     L  I +++       I I   + D   
Sbjct: 537 SLPRWSGDQVV-LDGLARFPAASARVPPALAAQLGMIAQLMRGRMPLDIVIVEAYADRQG 595

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
            ++       L+  RA +  ++L  +G+  DRI+  +G           P   
Sbjct: 596 DQSARA--LELAGARASAVKELLATAGLPADRITAAAG----DPSAKRAPGAP 642


>gi|260911457|ref|ZP_05918046.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634386|gb|EEX52487.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 383

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 14/137 (10%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
            +N + N     LS ++    ++ +++ DL K +         +N  K ++         
Sbjct: 221 GLNAQINSLRGDLSGKESRLAEKDRQIADLQKALDDC------NNQPKTIVKNVKSE--- 271

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDN 284
            ++ + + T +F +  S+  P     L+ I   +  H    + IRG+  ASP  +    N
Sbjct: 272 -TVTNLQPTVLFRQGKSVIDPAQYAPLELIASYMRNHPDAKVEIRGY--ASPEGSAEL-N 327

Query: 285 WRLSLDRAYSAYQVLMK 301
            +LS  RA +    L++
Sbjct: 328 QKLSNARAQAVKDALVR 344


>gi|38146952|gb|AAR11861.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
          Length = 147

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +        +L+K+ +     T   I I GHTD    R     N  L   RA + 
Sbjct: 46  FDFGKATIGDSDKAILEKVIQKAQKDTNTNIVIVGHTDT---RGTDEYNLELGEQRANAV 102

Query: 296 YQVLMKSGVS-EDRI-SKISGFAHHRLKI-ASDPMN-----SANR 332
              +++   S E+RI  +  G +   + + +S+P       + NR
Sbjct: 103 KDFIIEHDKSLENRITVQSKGKSEPAVLVYSSNPEEAEHAHAKNR 147


>gi|170764120|ref|ZP_02632608.2| conserved domain protein [Clostridium perfringens E str. JGS1987]
 gi|182625247|ref|ZP_02953022.1| conserved domain protein [Clostridium perfringens D str. JGS1721]
 gi|170661956|gb|EDT14639.1| conserved domain protein [Clostridium perfringens E str. JGS1987]
 gi|177909559|gb|EDT71999.1| conserved domain protein [Clostridium perfringens D str. JGS1721]
          Length = 230

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 34/187 (18%)

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233
            L  +    I         + +  KI   L+    +  V     E  +       ID + 
Sbjct: 36  LLTSIGISSIFVDNIAAERETVYDKIQGELNQYAVNEEVMNFNREEGK-------IDIKT 88

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEV---------LAHSTEVISIRGHTDASPFRNIARDN 284
              FD  SS+   +   +  ++G++         +    + I I GHTD   F       
Sbjct: 89  ETFFDSDSSVLKEDGKKLASELGDIFFKLLSNEDIKEKIDYIEIVGHTD---FAGSTIHG 145

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNS----------- 329
             LS +RA S    +M      + +     K SG +      + +  +            
Sbjct: 146 RELSTERAISFLNEMMPEDSELENLHGEKFKASGMSEFENYASKEERDRGYDEYNIEETK 205

Query: 330 ANRRIDI 336
            +RRI++
Sbjct: 206 KDRRIEV 212


>gi|218666977|ref|YP_002427062.1| OmpA family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519190|gb|ACK79776.1| OmpA family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 183

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS  +   I VL       L H T ++ ++G+   +      + N  LS +RA S 
Sbjct: 74  FTTNSSKLMTADIAVLDSAARFALKHPTAILLVKGYCSKT---GSYKYNLGLSQERAASV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              LM  GV   RI    G++      ++        N+R+ I
Sbjct: 131 AHYLMGRGVPNYRII-TRGYSWEDPVASNATREGRFLNQRVVI 172


>gi|198284396|ref|YP_002220717.1| OmpA/MotB domain-containing protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248917|gb|ACH84510.1| OmpA/MotB domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 184

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS  +   I VL       L H T ++ ++G+   +      + N  LS +RA S 
Sbjct: 75  FTTNSSKLMTADIAVLDSAARFALKHPTAILLVKGYCSKT---GSYKYNLGLSQERAASV 131

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
              LM  GV   RI    G++      ++        N+R+ I
Sbjct: 132 AHYLMGRGVPNYRII-TRGYSWEDPVASNATREGRFLNQRVVI 173


>gi|193212308|ref|YP_001998261.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
 gi|193085785|gb|ACF11061.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB
           8327]
          Length = 108

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDR 291
               FD   SI  PE+   L+   E +A +     +  GH D    R  A  N  L   R
Sbjct: 3   GDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDE---RGTAEYNMALGERR 59

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334
           A SA + LM  GVS DR+S IS +   +       +   S NRR+
Sbjct: 60  AESAKESLMSLGVSGDRLSTIS-YGEEKPFAIGHDEAAWSQNRRV 103


>gi|89076780|ref|ZP_01163047.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
 gi|89047578|gb|EAR53193.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34]
          Length = 139

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +   S     E    LQ + + L         + G+T  +        N +LS  RA + 
Sbjct: 23  YSVDSKHLTEEDKHRLQPMIQRLTRYPSATAEVTGYTSNT---GSEAYNLKLSEKRAKNV 79

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
            ++L +     ++I+   G         +D     + NRR++I
Sbjct: 80  AELLSQYVADANQITS-KGIGEANSIATNDTAKGRAENRRVEI 121


>gi|152982739|ref|YP_001354366.1| OmpA family protein [Janthinobacterium sp. Marseille]
 gi|151282816|gb|ABR91226.1| OmpA family protein [Janthinobacterium sp. Marseille]
          Length = 222

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           ++I G+TD       AR N  LS  RA +    L K GV+ +   K++G    +     D
Sbjct: 141 MTITGYTD---LLGNARSNQALSEKRAAAVADYLKKKGVTVN--MKVTGVGASQPVKDCD 195

Query: 326 PMNSA---------NRRIDI 336
              +          NRR+ I
Sbjct: 196 SKLNRTKLVACLAPNRRVLI 215


>gi|53717117|ref|YP_105939.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           mallei ATCC 23344]
 gi|238561376|ref|ZP_00442008.2| OmpA family protein [Burkholderia mallei GB8 horse 4]
 gi|52423087|gb|AAU46657.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei ATCC 23344]
 gi|238524569|gb|EEP88001.1| OmpA family protein [Burkholderia mallei GB8 horse 4]
          Length = 271

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 163 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTDAYNRQLSLARAETIRAYL 219

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN---------SANRRIDI 336
              G+  D I    G           P           + +RR+ I
Sbjct: 220 TTRGLPGDLIVA-QGLGKADPVSNGCPAGRSAEAIACLAPDRRVRI 264


>gi|319644013|ref|ZP_07998572.1| hypothetical protein HMPREF9011_04175 [Bacteroides sp. 3_1_40A]
 gi|317384361|gb|EFV65329.1| hypothetical protein HMPREF9011_04175 [Bacteroides sp. 3_1_40A]
          Length = 466

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDA---SPFRNIARDNWRLSLDR 291
            F+ +++     + ++ L ++  V       + + G  D+   +P  N +     LS  R
Sbjct: 368 FFNLNTAHLTDASQMLNLDELARVAKKYGLSLRVTGAADSSTGTPVLNGS-----LSASR 422

Query: 292 AYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324
                  L K G+  +RI K S  G A H    A+
Sbjct: 423 TDYIVTELEKRGIPIERIVKTSRGGIADHVPVEAN 457


>gi|146342455|ref|YP_001207503.1| hypothetical protein BRADO5614 [Bradyrhizobium sp. ORS278]
 gi|146195261|emb|CAL79286.1| hypothetical protein BRADO5614 [Bradyrhizobium sp. ORS278]
          Length = 247

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F++ S+ P P +    L  + + L+ H+   + + GH DA+        N  LS  RA +
Sbjct: 134 FERGSTRPNPADMKRALSILPKALSRHADATLLVEGHADAN---GSEDLNVLLSFSRAKA 190

Query: 295 AYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRR 333
             ++L K G+   +++ + +G    R     D   +A+ R
Sbjct: 191 VAELLKKDGIPAQQLAVRAAGAGTAR----GDTEAAADDR 226


>gi|46398693|gb|AAS92032.1| IcmN protein [Legionella pneumophila]
          Length = 145

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
            +T+  ++ D   KG+   +     LISI     + +F   S      +  +L +I   L
Sbjct: 6   DATIIKMMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFL 62

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                 I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +
Sbjct: 63  KQF-RKIAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDK 119

Query: 320 LKIASD--PMNSANRRIDI 336
              +       S N R++I
Sbjct: 120 PITSYTLGGDRSPNARVEI 138


>gi|118577387|ref|YP_899627.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504892|gb|ABL01374.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 191

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            I I G T        ++ N  LS  RA +    L+  GVS   + KISGF         
Sbjct: 124 KIVIDGFTCTI---GRSKYNLSLSKKRARTVADYLISKGVS---VLKISGFGESGKYKKK 177

Query: 325 DPMNSANRRIDI 336
                 NRR++I
Sbjct: 178 ----PLNRRVEI 185


>gi|149919334|ref|ZP_01907816.1| hypothetical protein PPSIR1_03938 [Plesiocystis pacifica SIR-1]
 gi|149819834|gb|EDM79258.1| hypothetical protein PPSIR1_03938 [Plesiocystis pacifica SIR-1]
          Length = 383

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%)

Query: 242 SIPLPETIVVLQKI---GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           +  LPE   + +++    E L    E  + I GH D     N    N  LS  RA    +
Sbjct: 38  ADALPEARGLERELEASAEALRQDPELHLLIIGHADED---NTDEYNRALSQRRAEHVRE 94

Query: 298 VLMKSGVSEDR---ISKISGF---AHHRLKIASDPMNSANRRIDI 336
            L     SE R     +  G    +      + +   + NRR+++
Sbjct: 95  RLAARLPSEARERLHLEARGEWDASDRAEPSSDEDAKARNRRVEL 139


>gi|229109630|ref|ZP_04239218.1| Excalibur domain protein [Bacillus cereus Rock1-15]
 gi|228673816|gb|EEL29072.1| Excalibur domain protein [Bacillus cereus Rock1-15]
          Length = 289

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 57/161 (35%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI D  +    ++  
Sbjct: 68  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALSGISDPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K ++
Sbjct: 128 KVASNNEEQKDSEKKKDLEKKEADEKTQKQEDEKRLAEEQARKQEDEKRQADEQARKQQE 187

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             K    E++  ++E        + +    ++K++  + A+
Sbjct: 188 EQKRQAGEQARKQQEEQKRQADEQARKQQEEQKRQADEQAR 228


>gi|170691012|ref|ZP_02882178.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
 gi|170144261|gb|EDT12423.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M]
          Length = 353

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 83/327 (25%), Gaps = 34/327 (10%)

Query: 22  AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81
             +        W   YA   +   A   +   +N    +       YF    +  ++A  
Sbjct: 42  QDEAAGAANPQWINAYAPAASGGTALASLQARLNRLPPEQN----GYFRAKAQCWISAG- 96

Query: 82  GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141
                    + + Q        E     +  + +G  N                      
Sbjct: 97  ---------QEARQAGDHWGFVEEAIGQAAVITLGLENGTSLSAANPALRTVSVVRPDLW 147

Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKIS 200
              N++  D            L  +  +          +    A KR   +QD L K   
Sbjct: 148 KIVNTIKSDPVTASCREAQQPLACAEVELMQAGHDAWVRNFAHAEKRLPDIQDNLRKSAE 207

Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVL 259
           S L    A               + +   D      FD    +  L      L K+   +
Sbjct: 208 SALQCKQAAPASAAAQSPAMPRTVTLR-ADSLFR--FDGGNDAAMLSAGRRELDKVARSM 264

Query: 260 AHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
             +     + I G+TD          N  LSL RA +    L   GV+      I G   
Sbjct: 265 KTTATLRELRITGYTDRL---GDNAHNQSLSLQRAQTVAAYLRARGVTVP--IAIRGLGS 319

Query: 318 HRLKIASDPMN--------SANRRIDI 336
            +                 + NRR++I
Sbjct: 320 AKPVAQCRQTRRDELVRCLAPNRRVEI 346


>gi|169343162|ref|ZP_02864184.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
 gi|170764264|ref|ZP_02639711.2| conserved domain protein [Clostridium perfringens CPE str. F4969]
 gi|169298800|gb|EDS80875.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
 gi|170714463|gb|EDT26645.1| conserved domain protein [Clostridium perfringens CPE str. F4969]
          Length = 230

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 27/132 (20%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEV---------LAHSTEVISIRGHTDASPFRN 279
           ID +    FD  SS+   +   +  ++G++         +    + I I GHTD   F  
Sbjct: 84  IDIKTETFFDSDSSVLKEDGKKLASELGDIFFKLLSNEDIKEKIDYIEIVGHTD---FAG 140

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNS------ 329
                  LS +RA S    +M      + +     K SG +      + +  +       
Sbjct: 141 STIHGRELSTERAISFLNEMMPEDSELENLHGEKFKASGMSEFENYASKEERDRGYDEYN 200

Query: 330 -----ANRRIDI 336
                 +RRI++
Sbjct: 201 IEETKKDRRIEV 212


>gi|283781950|ref|YP_003372705.1| OmpA/MotB domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283440403|gb|ADB18845.1| OmpA/MotB domain protein [Pirellula staleyi DSM 6068]
          Length = 333

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASP-------FRNIARDNW 285
           +F+  +++   E    L ++  +L +       + + G     P                
Sbjct: 201 LFEAGTAVLTAEGRESLDELSRLLRNDNLKKTKVLVAGIATGRPSQQAGQSTTARYSSAR 260

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH--RLKIASDPMNSANRRIDILVEDRQ 342
            L   RA +    L + GVSE+R+  ++G            +   +  R ++I + + +
Sbjct: 261 ALGTARAQAVADYLDRHGVSENRL-AVTGSGERGDAPLAKIEQPGTQVRGVEIHLLESE 318


>gi|57505318|ref|ZP_00371247.1| omp18 [Campylobacter upsaliensis RM3195]
 gi|315639283|ref|ZP_07894445.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter
           upsaliensis JV21]
 gi|57016454|gb|EAL53239.1| omp18 [Campylobacter upsaliensis RM3195]
 gi|315480609|gb|EFU71251.1| peptidoglycan-associated lipoprotein Omp18 [Campylobacter
           upsaliensis JV21]
          Length = 165

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDN 284
            + D      FD        +   V+     +         I++ G+ D          N
Sbjct: 52  QLNDTLGKVYFDFDKFNIRSDMQSVVSTNANIFNTEVSGTSITVEGNCDEW---GTDEYN 108

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335
             L L RA +    L+  GV+ DRI  +  +          +   ++ NRR +
Sbjct: 109 QALGLKRAKAVKDALISQGVNSDRI-SVKSYGETNPVCTEKTKTCDAQNRRAE 160


>gi|15891235|ref|NP_356907.1| omp16 protein [Agrobacterium tumefaciens str. C58]
 gi|22653886|sp|Q8U9L5|OMP16_AGRT5 RecName: Full=Outer membrane lipoprotein omp16 homolog; Flags:
           Precursor
 gi|15159600|gb|AAK89692.1| omp16 protein [Agrobacterium tumefaciens str. C58]
          Length = 177

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    LQ+  + L+      I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSTSIRADAQQTLQRQAQWLSRYPNYAITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L   GV   R+  IS +   +     D ++  S NRR
Sbjct: 125 AAATRDFLASQGVPASRMKTIS-YGKEKPVAVCDDISCWSQNRR 167


>gi|119356691|ref|YP_911335.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354040|gb|ABL64911.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 152

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               +D   S    + +  L+     +  ++   + I GH D    R     N  L   R
Sbjct: 47  GDVFYDYDKSELRMDAVEQLKTNAAWMQRNAASSVVIEGHCDE---RGTNEYNLALGERR 103

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A SA   ++  GV   R+  +S +   R       +   + NRR
Sbjct: 104 ANSAKDYIVNLGVDGARMKTVS-YGEERPFALGHDEASWAQNRR 146


>gi|262164958|ref|ZP_06032696.1| outer membrane protein [Vibrio mimicus VM223]
 gi|262027338|gb|EEY46005.1| outer membrane protein [Vibrio mimicus VM223]
          Length = 81

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
            S   I + GH D +      + N  LS  RA +  + L  +    +RI +  GF     
Sbjct: 3   DSQYKIVVEGHADQT---GNPKYNQALSERRAGAVTRYLRDTLKLGNRIVE-KGFGESAP 58

Query: 321 K--IASDPMNSANRRIDILVEDR 341
              +  +     NRR+ + ++ +
Sbjct: 59  VCTVQENAQTGCNRRVVLKIQPQ 81


>gi|116249010|ref|YP_764851.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115253660|emb|CAK12053.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 184

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F + S+      +  L      L+ +   ++ ++G  D S   +       LS  RA
Sbjct: 74  RIYFAQDSATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSASSMET---LSQKRA 130

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334
            +A   L   GV   R+    G+ + R  +      S    NRR+
Sbjct: 131 DAAMAYLASKGVEARRMWA-KGYGNDRE-VRDCTERSCKVQNRRV 173


>gi|18309223|ref|NP_561157.1| hypothetical protein CPE0241 [Clostridium perfringens str. 13]
 gi|110799601|ref|YP_694694.1| hypothetical protein CPF_0232 [Clostridium perfringens ATCC 13124]
 gi|170763958|ref|ZP_02636189.2| conserved domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|182420515|ref|ZP_02643181.2| conserved domain protein [Clostridium perfringens NCTC 8239]
 gi|18143899|dbj|BAB79947.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674248|gb|ABG83235.1| conserved domain protein [Clostridium perfringens ATCC 13124]
 gi|170711382|gb|EDT23564.1| conserved domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|182380407|gb|EDT77886.1| conserved domain protein [Clostridium perfringens NCTC 8239]
          Length = 230

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 27/132 (20%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEV---------LAHSTEVISIRGHTDASPFRN 279
           ID +    FD  SS+   +   +  ++G++         +    + I I GHTD   F  
Sbjct: 84  IDIKTETFFDSDSSVLKEDGKKLASELGDIFFKLLSNEDIKEKIDYIEIVGHTD---FAG 140

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNS------ 329
                  LS +RA S    +M      + +     K SG +      + +  +       
Sbjct: 141 STIHGRELSTERAISFLNEMMPEDSELENLHGEKFKASGMSEFENYASKEERDRGYDEYN 200

Query: 330 -----ANRRIDI 336
                 +RRI++
Sbjct: 201 IEETKKDRRIEV 212


>gi|251767113|ref|ZP_02266018.2| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei PRL-20]
 gi|254189998|ref|ZP_04896507.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254200781|ref|ZP_04907146.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei FMH]
 gi|254204753|ref|ZP_04911106.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei JHU]
 gi|147748393|gb|EDK55468.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei FMH]
 gi|147754339|gb|EDK61403.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei JHU]
 gi|157937675|gb|EDO93345.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|243063848|gb|EES46034.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei PRL-20]
          Length = 274

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 166 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTDAYNRQLSLARAETIRAYL 222

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN---------SANRRIDI 336
              G+  D I    G           P           + +RR+ I
Sbjct: 223 TTRGLPGDLIVA-QGLGKADPVSNGCPAGRSAEAIACLAPDRRVRI 267


>gi|332708989|ref|ZP_08428959.1| hypothetical protein LYNGBM3L_32710 [Lyngbya majuscula 3L]
 gi|332352178|gb|EGJ31748.1| hypothetical protein LYNGBM3L_32710 [Lyngbya majuscula 3L]
          Length = 284

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 40/233 (17%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           ++    S   D  + +D       E +  + +   +  L +   +   R KR  D  K +
Sbjct: 44  AQTALESTIDDLTRSEDEVVQLARENAELRAKAVRVDQLERGVAIWRARAKRSTDRQKAL 103

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV-VLQKIGEV 258
              +  L           +T      I +I  +    FD  S+         + Q+I   
Sbjct: 104 EQQVRALQVQIAAAPKPPDTPP----IIVIKDQGAYRFDSGSAEIPSAMKDYIRQQIVPA 159

Query: 259 LAHST-----EVISIRGHTDASPFRNIAR---------------------DNWRLSLDRA 292
           +  +       V+ + GHTD  P                            N  L L RA
Sbjct: 160 IESNAKDYEINVVELIGHTDGQPNLGAGNIDQTIGNVVNKNSSISQLRPGSNADLGLMRA 219

Query: 293 YSAYQVLMKSGVSEDRI--SKISGFAHHRLKIASDPMNSAN-------RRIDI 336
            +  Q+L +    E R+   +   ++  +L + +  +   +       RRI+I
Sbjct: 220 LAVVQLLREIQSKEGRLKGLQFRAYSAAQLILPNGKIAPISLKDDQTRRRIEI 272


>gi|46202522|ref|ZP_00053085.2| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 164

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + +     T+ VL  +   L  +   +I I+G TD+      A  N  LS  RA + 
Sbjct: 61  FNHAKADITGSTMQVLWGLAPALKAAEPGLIRIQGFTDS---SGKAAYNQVLSEKRAQAV 117

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            + L K G+   RI  ++G    +          A RR++I
Sbjct: 118 AEQLRKLGI-TARIE-VTGQGIVKGGKKGQKDQGA-RRVEI 155


>gi|73542619|ref|YP_297139.1| hypothetical protein Reut_A2935 [Ralstonia eutropha JMP134]
 gi|72120032|gb|AAZ62295.1| hypothetical protein Reut_A2935 [Ralstonia eutropha JMP134]
          Length = 165

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           SS++   + + +   I ++ +       + I GH D        + + RL+ DRA +  +
Sbjct: 48  SSALDTAQALRLGSWIADLKSSFPNYERVFIAGHVD-----ESEKGDKRLAHDRADTVRR 102

Query: 298 VLMKSGVSEDRIS 310
            L   G    RI 
Sbjct: 103 FLADRGFGIARIH 115


>gi|153877559|ref|ZP_02004282.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS]
 gi|152065977|gb|EDN65718.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS]
          Length = 188

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S        +L++    L  + E+ + + GH D    R     N  L   RA +A
Sbjct: 88  FGYDMSNIKSNARTILEQHAAYLTQNPEIYVRLEGHADE---RGSREYNLALGERRAETA 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDIL 337
              L+  GV E +++ +S +   R      ++     NRR++++
Sbjct: 145 KNTLIMLGVFETQVTTLS-YGEERPQTFEHNEQSWQQNRRVELV 187


>gi|77359582|ref|YP_339157.1| outer membrane protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874493|emb|CAI85714.1| conserved protein of unknown function ; putative outer membrane
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 244

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S +  P   + L ++  +L +     + + G  D    R   + N  LS  R  + 
Sbjct: 131 FKTGSRVIAPHFALQLDQLVTLLKNQPQLALDLSGFADQ---RGDEQANLLLSKARVNAV 187

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336
              L+K GVS  R+     F   +    ++    N+ +RR+ +
Sbjct: 188 QSYLIKQGVSHTRL-STQAFGEQQTLAKTNTVEDNTFDRRVTL 229


>gi|27381673|ref|NP_773202.1| hypothetical protein blr6562 [Bradyrhizobium japonicum USDA 110]
 gi|27354842|dbj|BAC51827.1| blr6562 [Bradyrhizobium japonicum USDA 110]
          Length = 389

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 19/251 (7%)

Query: 86  EQNPPERSSQNKIDL-SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144
            +  P R  Q    L   D+ +         G   Q  + +         +    +    
Sbjct: 119 GERLPARDRQGLRRLDQGDQQVDPLPGLDAQGHQQQLPEGRGRRGVSMMRAKGLTTAGLG 178

Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204
            +L      G    ++T   +     +       ++  + A+K ++ ++    +I +   
Sbjct: 179 IALGMALLAGAASAQTTPPTRDDIVGKLNHFEEAAEIDLPALK-QQVMERAKARIKNDPG 237

Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262
            +    I   +            +        FD  + I  P +   + +I + L H+  
Sbjct: 238 PVNRPPIAPDLA----------KLPAFNAQIQFDADTPIIQPASYQTVGRIADALVHASL 287

Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320
                 I GH +++     A     LS  RA +   VL+ +  +S  R+  I G    + 
Sbjct: 288 LPYTFLIVGHVESNAKTREANAI--LSQRRADAIRDVLVNTFKISTKRLHPI-GLGEEQF 344

Query: 321 KIASDPMNSAN 331
              + P ++AN
Sbjct: 345 LDRAKPTSAAN 355


>gi|183222494|ref|YP_001840490.1| hypothetical protein LEPBI_I3149 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912532|ref|YP_001964087.1| OmpA-family lipoprotein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777208|gb|ABZ95509.1| OmpA-family lipoprotein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780916|gb|ABZ99214.1| Putative bacterial outer membrane protein; putative signal peptide
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 189

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 247 ETIVVLQKIGEVLAHST--EVISIRGHTDASP---FRNIARDNWRLSLDRAYSAYQVLMK 301
                +  I + LA       + I GH DAS         + N   S  R+ +    L+K
Sbjct: 91  WAKDNVAYIKDALAKLPEGYALEITGHADASGPEEAEGAKKGNGFYSQIRSDAMKDALVK 150

Query: 302 SGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDILVEDR 341
            G+  +RI  ++  A   +     D  ++ NRR+   V  +
Sbjct: 151 QGIPAERI--VTKAAGSSKPISGFDEKDAINRRVTFQVVSK 189


>gi|53721933|ref|YP_110918.1| OmpA family protein [Burkholderia pseudomallei K96243]
 gi|121596633|ref|YP_989916.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           mallei SAVP1]
 gi|124383233|ref|YP_001024397.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           mallei NCTC 10229]
 gi|126443869|ref|YP_001062318.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126447564|ref|YP_001078178.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Burkholderia
           mallei NCTC 10247]
 gi|126456472|ref|YP_001075283.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|134279076|ref|ZP_01765789.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|167723261|ref|ZP_02406497.1| ompA family protein [Burkholderia pseudomallei DM98]
 gi|167742230|ref|ZP_02415004.1| ompA family protein [Burkholderia pseudomallei 14]
 gi|167819406|ref|ZP_02451086.1| ompA family protein [Burkholderia pseudomallei 91]
 gi|167827777|ref|ZP_02459248.1| ompA family protein [Burkholderia pseudomallei 9]
 gi|167849251|ref|ZP_02474759.1| ompA family protein [Burkholderia pseudomallei B7210]
 gi|167897853|ref|ZP_02485255.1| ompA family protein [Burkholderia pseudomallei 7894]
 gi|167906193|ref|ZP_02493398.1| ompA family protein [Burkholderia pseudomallei NCTC 13177]
 gi|167914516|ref|ZP_02501607.1| ompA family protein [Burkholderia pseudomallei 112]
 gi|167922410|ref|ZP_02509501.1| ompA family protein [Burkholderia pseudomallei BCC215]
 gi|217418937|ref|ZP_03450444.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|226197635|ref|ZP_03793210.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237509538|ref|ZP_04522253.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|242311390|ref|ZP_04810407.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254174141|ref|ZP_04880803.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei ATCC 10399]
 gi|254183366|ref|ZP_04889958.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|254193146|ref|ZP_04899581.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|254263683|ref|ZP_04954548.1| ompA family protein [Burkholderia pseudomallei 1710a]
 gi|254300263|ref|ZP_04967709.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|254357001|ref|ZP_04973276.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei 2002721280]
 gi|52212347|emb|CAH38371.1| OmpA family protein [Burkholderia pseudomallei K96243]
 gi|121224431|gb|ABM47962.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei SAVP1]
 gi|124291253|gb|ABN00523.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei NCTC 10229]
 gi|126223360|gb|ABN86865.1| ompA family protein [Burkholderia pseudomallei 668]
 gi|126230240|gb|ABN93653.1| ompA family protein [Burkholderia pseudomallei 1106a]
 gi|126240418|gb|ABO03530.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei NCTC 10247]
 gi|134249495|gb|EBA49576.1| ompA family protein [Burkholderia pseudomallei 305]
 gi|148026028|gb|EDK84151.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei 2002721280]
 gi|157810253|gb|EDO87423.1| ompA family protein [Burkholderia pseudomallei 406e]
 gi|160695187|gb|EDP85157.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Burkholderia
           mallei ATCC 10399]
 gi|169649900|gb|EDS82593.1| ompA family protein [Burkholderia pseudomallei S13]
 gi|184213899|gb|EDU10942.1| ompA family protein [Burkholderia pseudomallei 1655]
 gi|217398241|gb|EEC38256.1| ompA family protein [Burkholderia pseudomallei 576]
 gi|225930244|gb|EEH26256.1| ompA family protein [Burkholderia pseudomallei Pakistan 9]
 gi|235001743|gb|EEP51167.1| OmpA family protein [Burkholderia pseudomallei MSHR346]
 gi|242134629|gb|EES21032.1| ompA family protein [Burkholderia pseudomallei 1106b]
 gi|254214685|gb|EET04070.1| ompA family protein [Burkholderia pseudomallei 1710a]
          Length = 276

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 168 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTDAYNRQLSLARAETIRAYL 224

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN---------SANRRIDI 336
              G+  D I    G           P           + +RR+ I
Sbjct: 225 TTRGLPGDLIVA-QGLGKADPVSNGCPAGRSAEAIACLAPDRRVRI 269


>gi|323705966|ref|ZP_08117537.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534764|gb|EGB24544.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 230

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 21/166 (12%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-----IDQRNTPMFDKSS 241
            +K ++ ++    +  ++ L+ +     +          IS       D+    + D+  
Sbjct: 45  AQKAKVDEIIGVRARIINQLLNEFKNSDLSLSIDPQTGAISFSEGIFFDKDKFELKDEGK 104

Query: 242 SIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA-YSAYQVL 299
                     +   +          I + GHTD +        N  LS  RA      +L
Sbjct: 105 RYLNEFFPRYISILMDPKFKKYISQIIVEGHTDDT---GDYVYNLELSQKRAFEVVRYIL 161

Query: 300 MKS--GVSEDRISK-------ISGFAHHRLKIASDPMNS-ANRRID 335
                G+   ++          +G ++ +L I +  +N   +RR++
Sbjct: 162 QSDIKGIDS-KVKSDLMPYITANGRSYSQLIIENGKVNREKSRRVE 206


>gi|213422612|ref|ZP_03355677.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 90

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-- 325
           + G TD     + A  N  LS  RA S    L+  G+  D+IS   G         +   
Sbjct: 1   VLGFTD--RIGSDAY-NQGLSEKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCD 56

Query: 326 ---PMNSA------NRRIDILVE 339
              P  +       +RR++I V+
Sbjct: 57  NVKPRAALIDCLAPDRRVEIEVK 79


>gi|299534095|ref|ZP_07047447.1| cytochrome c oxidase, subunit II [Comamonas testosteroni S44]
 gi|298718004|gb|EFI59009.1| cytochrome c oxidase, subunit II [Comamonas testosteroni S44]
          Length = 503

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 24/112 (21%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+   S+   +    ++K  E   AH    I++ G  D++     A  N  L+ +RA
Sbjct: 403 QVFFETGKSVLDDKAQAAVKKAAEYWSAHKDGKIALSGFVDST---GNADKNAELAKERA 459

Query: 293 YSAYQVLMKSGVSEDR--------ISKISGFAHHRLKIASDPMNSANRRIDI 336
            +  ++L  SG++ DR        I+  +G A  +            RR+DI
Sbjct: 460 KAVAKLLEDSGIAGDRIELRKPETITAAAG-ADQQA-----------RRVDI 499


>gi|258591277|emb|CBE67574.1| OmpA/MotB domain protein precursor [NC10 bacterium 'Dutch
           sediment']
          Length = 214

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    ++  ++ +  E    HS   ++I GH+D    R  +  N  L   RA +A
Sbjct: 111 FDFDQSAIRDDSKKLMDENVEWFRQHSAARVTIEGHSDE---RGSSEYNLALGERRARAA 167

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333
              L+ +G++ +RI  IS F   R  ++   +     NRR
Sbjct: 168 RDYLVAAGIAANRIGTIS-FGKERPFVSGHDESTWRWNRR 206


>gi|89094116|ref|ZP_01167059.1| probable signal peptide protein [Oceanospirillum sp. MED92]
 gi|89081591|gb|EAR60820.1| probable signal peptide protein [Oceanospirillum sp. MED92]
          Length = 198

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 21/117 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD  SS P       +  I + +        +++ GH D       A ++  LS  R  +
Sbjct: 92  FDFDSSNPGD-----VSDIADYIKSLKEVNSVNLVGHAD--RIGASAYND-ALSQKRVNA 143

Query: 295 AYQVLMKSGVSEDRISKISGF-AHHRLKIASDPMN--------SANRRIDILVEDRQ 342
               L  +GVS   IS  +G+   +    + D            ANRR+++ +  ++
Sbjct: 144 VSDALQGAGVSGSAIS--TGYMGENAPAKSCDGQRGTNLIDCLRANRRVEVEISGKK 198


>gi|291276673|ref|YP_003516445.1| peptidoglycan associated lipoprotein [Helicobacter mustelae 12198]
 gi|290963867|emb|CBG39703.1| peptidoglycan associated lipoprotein (omp18) [Helicobacter mustelae
           12198]
          Length = 169

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244
           A K ++  + + + ++        D +  G +                 +  F       
Sbjct: 27  APKVQQEEEPVQENVAKAPEPKKKDILQDGTVV---------------GSVYFAYDQYNI 71

Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
            P    V+    E +  + +  + + G+TD   F +    N+ LS  RA +    L+  G
Sbjct: 72  PPSMSDVIDSSVEKINENPDMNVVVEGNTDE--FGSDEY-NFALSNKRAMAVQSALITRG 128

Query: 304 VSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336
           +S+++I  I      +       +     NRR DI
Sbjct: 129 ISKNKI-SILSLGKTKPVCTEKREECYQKNRRGDI 162


>gi|85373329|ref|YP_457391.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594]
 gi|84786412|gb|ABC62594.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594]
          Length = 167

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           L+       +I GH D    R     N  L   RA +A   L   G+   R+S IS    
Sbjct: 87  LSQYPGKRATIEGHADE---RGTREYNLALGERRANAAKNYLASLGIDTSRLSVISYGEE 143

Query: 318 HRLKIASDPMN-SANRR-IDILVE 339
             + + SD    S NRR + + ++
Sbjct: 144 RPVALGSDQAAWSQNRRAVTVTID 167


>gi|324326202|gb|ADY21462.1| hypothetical protein YBT020_11090 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 331

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 2/178 (1%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           L  FFLV+ I++          +         +  A   I +  +    ++  K+  +  
Sbjct: 73  LFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFGALSSISNPTSEKTTATSKKVASNTT 132

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           E    +  +L+    ++K Q Q  E         +Q +  + +  +  ++ ++  +  D 
Sbjct: 133 EQKDSDKKELEKKEADEKAQKQEDEKRQAEEQARKQEDEKRQADEQARKQQEEQKRLADE 192

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           +    +EE          K    + +KRL D   +         AD   +    E  R
Sbjct: 193 QTRKQQEEQKRQADEQARK--QQEEQKRLADEQTRKQQEEQKRQADEQARKQQEEQKR 248


>gi|206975258|ref|ZP_03236172.1| conserved domain protein [Bacillus cereus H3081.97]
 gi|217959697|ref|YP_002338249.1| hypothetical protein BCAH187_A2296 [Bacillus cereus AH187]
 gi|206746679|gb|EDZ58072.1| conserved domain protein [Bacillus cereus H3081.97]
 gi|217067730|gb|ACJ81980.1| conserved domain protein [Bacillus cereus AH187]
          Length = 331

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 2/179 (1%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           L  FFLV+ I++          +         +  A   I +  +    ++  K+  +  
Sbjct: 73  LFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFGALSSISNPTSEKTTATSKKVASNTT 132

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           E    +  +L+    ++K Q Q  E         +Q +  + +  +  ++ ++  +  D 
Sbjct: 133 EQKDSDKKELEKKEADEKTQKQEDEKRQAEEQARKQEDEKRQADEQARKQQEEQKRLADE 192

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           +    +EE   L      K    + +KR  D   +         AD   +    E  R 
Sbjct: 193 QTRKQQEEQKRLADEQTRK--QQEEQKRQADEQARKQQEEQKRQADEQARKQQEEQKRQ 249


>gi|282897761|ref|ZP_06305760.1| hypothetical protein CRD_01880 [Raphidiopsis brookii D9]
 gi|281197440|gb|EFA72337.1| hypothetical protein CRD_01880 [Raphidiopsis brookii D9]
          Length = 206

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 42/153 (27%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQ-----KIGEVLAHSTEV--ISIRGHTDASPFR 278
           I +  + +   F    +    E    ++     KI EV+    ++  I + GHTD  P  
Sbjct: 42  IILFPESSRYNFRSGRAELSSEFRDHIRTKLKPKILEVVKQYKDIDAIEVIGHTDGRPIN 101

Query: 279 NIAR-----------------------------DNWRLSLDRAYSAYQVLMK--SGVSED 307
           ++ +                              N  L + RA +  Q L +   G+S+ 
Sbjct: 102 SVEQSISSHNSNLDNNLERVNLGKLSVSRLQPGSNTDLGIMRALAVVQELKQSGGGISKL 161

Query: 308 RISKISG----FAHHRLKIASDPMNSANRRIDI 336
            +   S         +        N   RRI+I
Sbjct: 162 NLRAYSAGQLLLEDGQPAPIDTTDNPERRRIEI 194


>gi|254458914|ref|ZP_05072337.1| OmpA/MotB [Campylobacterales bacterium GD 1]
 gi|207084185|gb|EDZ61474.1| OmpA/MotB [Campylobacterales bacterium GD 1]
          Length = 184

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340
           N+ L L RA +  + LM  GV+E RI+ +S +            +  S NRR+D  +  
Sbjct: 127 NFALGLKRASTVKKALMAEGVNETRITMVS-YGESNPVCNDKTQDCWSKNRRVDFKLLP 184


>gi|302340145|ref|YP_003805351.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637330|gb|ADK82757.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 343

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWR 286
           +++R    F  + S    E    L+  G  L    S + +SI GH          +    
Sbjct: 229 VEKRAVIYFHPNDSELTAEAQTQLRVFGRQLREWNSIDAVSIEGH---CALLGTEKGRIE 285

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           LS +RA ++   L   G+    +  +  FA  R           NRR++I
Sbjct: 286 LSRERAENSAAFLETIGIPAQGV-SLQWFAGERPATRDPDKQELNRRVEI 334


>gi|146300540|ref|YP_001195131.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146154958|gb|ABQ05812.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 303

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
           SS     +    +  I + L +     + I GH+D    R +   N  L+  RA      
Sbjct: 205 SSFNLTNDEKQKVSDISKYLENVKNASVLIVGHSDNVGNREL---NIVLAQKRADFTKNY 261

Query: 299 LMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339
           L+K+G+   RI ++  G         +    ++NRR  I ++
Sbjct: 262 LIKNGIEASRIETESKGPDEPAGDNTTAEGKASNRRTVITIK 303


>gi|163789576|ref|ZP_02184014.1| Flagellar motor protein [Carnobacterium sp. AT7]
 gi|159875108|gb|EDP69174.1| Flagellar motor protein [Carnobacterium sp. AT7]
          Length = 61

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342
            ++G+   R+  + G+  +R K  +        NRR+DIL+ + +
Sbjct: 9   QRTGIDPKRV-SVVGYGEYRPKADNKTKEGRLENRRVDILILNSE 52


>gi|84385694|ref|ZP_00988725.1| hypothetical protein V12B01_26209 [Vibrio splendidus 12B01]
 gi|84379674|gb|EAP96526.1| hypothetical protein V12B01_26209 [Vibrio splendidus 12B01]
          Length = 187

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 12/149 (8%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVV 251
           L+ ++S   + +    ++K      T       + DQ +  +   +         +    
Sbjct: 47  LSVEVSEKKNIVQNKKVIKTDAINVTDA----CVFDQESMSLLLNYKTDKHSLTDKHKQA 102

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310
           + +  E L    + I I GHTD     + A  N +LS  R  SA   L K+ G+    I 
Sbjct: 103 IAQYLE-LVDQDKKIVIEGHTDD--IGSKAY-NKKLSQRRTSSATVYLKKNLGLGNRIIE 158

Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVE 339
           K  G +    K+  +  +  NRR+ + ++
Sbjct: 159 KAFGESSPICKVEENAASGCNRRVILTIK 187


>gi|299141391|ref|ZP_07034528.1| outer membrane protein [Prevotella oris C735]
 gi|298577351|gb|EFI49220.1| outer membrane protein [Prevotella oris C735]
          Length = 425

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 13/166 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +     +P +    +L  +++    ++ K           +  V  V      +   ++I
Sbjct: 265 QPSEPNMPEVDALHVLPERKEGNESEMTKVTEQVEQSKTTERPVSEVSVAAAES---VAI 321

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +D   T  F  +S+    +    +Q++  +L  + +  I + G  D          N RL
Sbjct: 322 VDFP-TVYFAFNSARISSKEEAKMQQMLHLLQDNPKLNIIVTGWCDTV---GSDAVNLRL 377

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           S+ RA +    L   G++  RI K +G      +  ++   +  RR
Sbjct: 378 SVRRAKALKTWLTTQGINAARI-KTAGKG----RDFNEKNAAKARR 418


>gi|153833424|ref|ZP_01986091.1| OmpA family protein [Vibrio harveyi HY01]
 gi|148870312|gb|EDL69242.1| OmpA family protein [Vibrio harveyi HY01]
          Length = 235

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 76/211 (36%), Gaps = 29/211 (13%)

Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209
             + G+     +DL   +     +    L ++ ++   + K + +  +K    +   + +
Sbjct: 11  TGDSGEHWMSVSDLMAGLMMVFLFISVALMRDAMVERDKIKEVAETYQKTQQAIYIALLE 70

Query: 210 NIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI----GEVL--- 259
              K +     E  R  + ++        +F    +    +  ++L        EVL   
Sbjct: 71  EFAKDLDTWGAEIDRDTLSVNFTAPE--VLFGNGKANLTQQFQIILNDFFPRYLEVLEQY 128

Query: 260 AHSTEVISIRGHT------DASPFRNIARDNWRLSLDRAYSAYQVLMK--------SGVS 305
               + I I GHT      D+S +     +N RLS  R  +    +MK         G  
Sbjct: 129 KPIIQEIKIEGHTSSRWNHDSSDY-EAYFNNMRLSQSRTRAVLGYVMKLDDVRAQHYGWV 187

Query: 306 EDRISKISGFAHHRLKIASDPMNS-ANRRID 335
           ++ ++ + G++  +  +  +  +   +RR+ 
Sbjct: 188 KNNVAAV-GYSSSKAVVKDNVEDEKRSRRVS 217


>gi|83941931|ref|ZP_00954393.1| OmpA domain protein [Sulfitobacter sp. EE-36]
 gi|83847751|gb|EAP85626.1| OmpA domain protein [Sulfitobacter sp. EE-36]
          Length = 520

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S     ++   +Q++   L    +    +   G +D       +  N  ++L RA 
Sbjct: 413 FEAGSVRLDAQSRSNVQQLARALEVGQYDARRLLFVGFSDGQ---GASFANRDIALRRAE 469

Query: 294 SAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDP--MNSANRRIDILV 338
           +  Q ++ + V+ + + +++     F         D      ANRR+++ V
Sbjct: 470 AVRQAVITAAVTAN-LERVTLDLDAFGEAMPMACDDTAWGRQANRRVEVWV 519


>gi|163755163|ref|ZP_02162283.1| peptidoglycan-associated cytoplasmic membrane protein [Kordia
           algicida OT-1]
 gi|161324583|gb|EDP95912.1| peptidoglycan-associated cytoplasmic membrane protein [Kordia
           algicida OT-1]
          Length = 139

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           + +S     E+  +L  +  ++ +S     ++ H+     R    DN   +  RA    +
Sbjct: 39  NSASLELKKESFKILDTLAVIIKNSNASYMVKSHST---LRGKQEDNLVKTQKRAEIIKE 95

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337
            L+  GV   R+    GF        +     +  N RI+I+
Sbjct: 96  ELINRGVDSTRLIA-KGFGETDRIYHTPTRIGDMKNDRIEIV 136


>gi|239995972|ref|ZP_04716496.1| peptidoglycan-associated lipoprotein [Alteromonas macleodii ATCC
           27126]
          Length = 188

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289
              T  FD   S   PE   +L K    L  +    ++I GHTD+   R     N  L  
Sbjct: 81  NEQTVYFDFDRSSIKPEFQRILDKHAAFLVKNPSTKVTIEGHTDS---RGTPEYNIALGE 137

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            RA S    L+ +GVS  +++ +S +   +  +  +++   + NRR
Sbjct: 138 RRAQSVETYLLNAGVSSSQVTVVS-YGEEKPAVMGSTEYAFAQNRR 182


>gi|212694280|ref|ZP_03302408.1| hypothetical protein BACDOR_03806 [Bacteroides dorei DSM 17855]
 gi|224026312|ref|ZP_03644678.1| hypothetical protein BACCOPRO_03068 [Bacteroides coprophilus DSM
           18228]
 gi|253571446|ref|ZP_04848852.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254884383|ref|ZP_05257093.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317480556|ref|ZP_07939646.1| hypothetical protein HMPREF1007_02763 [Bacteroides sp. 4_1_36]
 gi|329960456|ref|ZP_08298844.1| hypothetical protein HMPREF9446_00403 [Bacteroides fluxus YIT
           12057]
 gi|212662781|gb|EEB23355.1| hypothetical protein BACDOR_03806 [Bacteroides dorei DSM 17855]
 gi|224019548|gb|EEF77546.1| hypothetical protein BACCOPRO_03068 [Bacteroides coprophilus DSM
           18228]
 gi|251838654|gb|EES66739.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254837176|gb|EET17485.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|316903285|gb|EFV25149.1| hypothetical protein HMPREF1007_02763 [Bacteroides sp. 4_1_36]
 gi|328532686|gb|EGF59473.1| hypothetical protein HMPREF9446_00403 [Bacteroides fluxus YIT
           12057]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  +   L  + +V L ++  +       + + G  D++       DN  LS  RA  
Sbjct: 370 FFELGTDRLLNRSQLVNLDEVARIAKKYGLKVKVIGAADSATGSEAINDN--LSRSRARF 427

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR--RI 334
             + LMK G+    IS+I   G   +         N ANR  RI
Sbjct: 428 IAEELMKRGMENGTISQIFDGGIDDYSP-------NEANRHTRI 464


>gi|313191705|emb|CBW30518.1| putative outer membrane protein A [Bordetella petrii]
          Length = 161

 Score = 45.3 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294
            FD   S   PE   +LQ++ +          I  GHTD+         N  LS  RA S
Sbjct: 84  FFDFDKSTLKPEGRQLLQQVAQQAQGINLETIIAVGHTDS--IGTEQY-NQGLSERRAAS 140

Query: 295 AYQVLMKSGVSEDRIS 310
               L+  G+  +RI 
Sbjct: 141 VKAYLVSLGIDPNRIY 156


>gi|114706797|ref|ZP_01439697.1| outer membrane lipoprotein [Fulvimarina pelagi HTCC2506]
 gi|114537745|gb|EAU40869.1| outer membrane lipoprotein [Fulvimarina pelagi HTCC2506]
          Length = 176

 Score = 45.3 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F+  SS    +    LQ+  + L       I++ GH+D    R     N  L   R
Sbjct: 67  DRIFFETDSSAITADAQQTLQRQAQWLNQYPQYQITVEGHSDE---RGTREYNLALGARR 123

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L + GV+  R+  IS +   R     D ++  S NRR
Sbjct: 124 AAATRDYLAQLGVNAGRMRTIS-YGKERPVAVCDNISCWSQNRR 166


>gi|289208674|ref|YP_003460740.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288944305|gb|ADC72004.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 253

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 22/183 (12%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            + +     ++ +     L   I S L     +++ +    E  R  + +   +     +
Sbjct: 50  QVERSSAAHVEVRNEATALRAAIYSVLEEEFREDLPRW-NAELDRDTLTLRFREPE--VL 106

Query: 237 FDKSSSIPLPETIVVLQKIGE-------VLAHSTEVISIRGHTDAS-----PFRNIARDN 284
           F++SS+   P    +L              A     + I GHT +         +    N
Sbjct: 107 FERSSASIRPRFETILDDFMPRYAEQLRPFADVIREVRIEGHTSSEWAGSDDAMDAYFGN 166

Query: 285 WRLSLDRAYSAYQV------LMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337
             LS  R  +  +       L +      R++ +   +  R+  A    +  A+RR++  
Sbjct: 167 MDLSQRRTRAVLEHAYRLEPLQEDDWFRSRVAAVGLSSSRRVLDADGQEDHEASRRVEFS 226

Query: 338 VED 340
           V  
Sbjct: 227 VLT 229


>gi|188994593|ref|YP_001928845.1| outer membrane protein 41 precursor [Porphyromonas gingivalis ATCC
           33277]
 gi|53828382|dbj|BAD54749.1| hypothetical protein [Porphyromonas gingivalis]
 gi|188594273|dbj|BAG33248.1| outer membrane protein 41 precursor [Porphyromonas gingivalis ATCC
           33277]
          Length = 391

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
                +F   S +   + ++ L  + + +  + E I++ G+ D  P  N    N +LS  
Sbjct: 289 TEKAVLFRFDSHVVDKDQLINLYDVAQFVKETNEPITVVGYAD--PTGNTQY-NEKLSER 345

Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           RA +   VL  K GV  + +  +          +    N    R+ I+
Sbjct: 346 RAKAVVDVLTGKYGVPSE-LISVEWKGDSTQPFSKKAWN----RVVIV 388


>gi|34540490|ref|NP_904969.1| immunoreactive 43 kDa antigen PG32 [Porphyromonas gingivalis W83]
 gi|37538316|sp|Q9S3R9|OMP41_PORGI RecName: Full=Outer membrane protein 41; Short=Omp41; AltName:
           Full=PG32; Flags: Precursor
 gi|34396803|gb|AAQ65868.1| immunoreactive 43 kDa antigen PG32 [Porphyromonas gingivalis W83]
          Length = 391

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
                +F   S +   + ++ L  + + +  + E I++ G+ D  P  N    N +LS  
Sbjct: 289 TEKAVLFRFDSHVVDKDQLINLYDVAQFVKETNEPITVVGYAD--PTGNTQY-NEKLSER 345

Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           RA +   VL  K GV  + +  +          +    N    R+ I+
Sbjct: 346 RAKAVVDVLTGKYGVPSE-LISVEWKGDSTQPFSKKAWN----RVVIV 388


>gi|110803319|ref|YP_697565.1| hypothetical protein CPR_0231 [Clostridium perfringens SM101]
 gi|110683820|gb|ABG87190.1| hypothetical protein CPR_0231 [Clostridium perfringens SM101]
          Length = 230

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 27/132 (20%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEV---------LAHSTEVISIRGHTDASPFRN 279
           ID +    FD  SS+   +   +  ++G++         +    + I I GHTD   F  
Sbjct: 84  IDIKTETFFDSDSSVLKKDGKKLASELGDIFFKLLSNEDIKEKIDYIEIVGHTD---FAG 140

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFAHHRLKIASDPMNS------ 329
                  LS +RA S    +M      + +     K SG +      + +  +       
Sbjct: 141 STIHGRELSTERAISFLNEMMPEDSELENLHGEKFKASGMSEFENYASKEERDRGYDEYN 200

Query: 330 -----ANRRIDI 336
                 +RRI++
Sbjct: 201 IEETKKDRRIEV 212


>gi|110598823|ref|ZP_01387080.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031]
 gi|110339554|gb|EAT58072.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031]
          Length = 155

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291
               +D   S    + +  L    + +     + + + GH D    R     N  L   R
Sbjct: 50  GDVFYDFDKSALRSDAVSQLNTNADWMKANRAKSVVVEGHCDE---RGTNEYNLALGERR 106

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   ++  GV   R+  +S F   +   A       + NRR
Sbjct: 107 ANAAKDYIVNLGVDASRLKTVS-FGEEKPFAAGSTEEAWAQNRR 149


>gi|78067645|ref|YP_370414.1| cytochrome c oxidase, subunit II [Burkholderia sp. 383]
 gi|77968390|gb|ABB09770.1| Cytochrome c oxidase, subunit II [Burkholderia sp. 383]
          Length = 531

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD       A  N  L+  RA + 
Sbjct: 435 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDK---SGSADANAELAKHRAQAV 491

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 492 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 527


>gi|170734192|ref|YP_001766139.1| cytochrome c oxidase subunit II [Burkholderia cenocepacia MC0-3]
 gi|169817434|gb|ACA92017.1| cytochrome c oxidase, subunit II [Burkholderia cenocepacia MC0-3]
          Length = 532

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANTELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 528


>gi|83855407|ref|ZP_00948937.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83843250|gb|EAP82417.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S     ++   +Q++   L    +    +   G +D       +  N  ++L RA 
Sbjct: 413 FEAGSVRLDAQSRSNVQQLARALEVGQYDARRLLFVGFSDGQ---GASFANRDIALRRAE 469

Query: 294 SAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDP--MNSANRRIDILV 338
           +  Q ++ + V+ + + +++     F         D      ANRR+++ V
Sbjct: 470 AVRQAVITAAVTAN-LERVTLDLDAFGEAMPMACDDTAWGRQANRRVEVWV 519


>gi|313674265|ref|YP_004052261.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126]
 gi|312940963|gb|ADR20153.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126]
          Length = 571

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 219 TTRTGILI-SIIDQ-----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271
            T   + +  +ID           F+ +SS         L ++   L       + I   
Sbjct: 447 ITDEQLEVKRLIDSVLNISAYQVYFEVNSSEIDESHDQKLIEMANFLKSHQNLGVQISAF 506

Query: 272 --TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
             +D +P     + N+ LS  RA S  +   ++G+  DR++   GF 
Sbjct: 507 ASSDGNP-----KYNYELSNRRAQSVLKFFKENGIESDRLAA-RGFG 547


>gi|288927834|ref|ZP_06421681.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330668|gb|EFC69252.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 383

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
            +N + N     LS +     ++ +++ DL K +         +N  K ++         
Sbjct: 221 GLNAQINSLRGDLSNKDSRLAEKDRQISDLQKALDDC------NNQPKTIVKNVKSE--- 271

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284
            ++ + + T +F +  ++  P     L+ I   + +  E  + IRG+  ASP  +    N
Sbjct: 272 -TVTNLQPTVLFRQGKAVIDPAQYAPLELIASYMRNHPEAKVEIRGY--ASPEGSAEL-N 327

Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRI 309
            +LS  RA +    L+K   ++  R+
Sbjct: 328 QKLSNARAQAVKDALVKRYKIAASRL 353


>gi|296126315|ref|YP_003633567.1| outer membrane protein [Brachyspira murdochii DSM 12563]
 gi|296018131|gb|ADG71368.1| outer membrane protein [Brachyspira murdochii DSM 12563]
          Length = 205

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

Query: 211 IVKGVLFETTRTGILISIIDQRNT------------PMFDKSSSIPLPETIVVLQKIGEV 258
           +  G   + T  G ++ + D ++               F   +++ +         + ++
Sbjct: 48  LPDGAAVKETPRGKVLVLHDPKSKTDIGKSGNASYEVKFGFDNTVEIGSYKEAYNLVYQI 107

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           + ++    I + G    S     A  N++LS  RA +++  ++K G    R+ K + F  
Sbjct: 108 IKNNPNIRIMVEG---NSSKEGPAPYNYQLSQRRADTSFNYIIKLGSENSRLLK-NAFGE 163

Query: 318 HRLKIASDPMNSANRRID-ILVED 340
              +    P    NRR + I++ D
Sbjct: 164 ALPEY---PTLKENRRCEFIIIMD 184


>gi|107023780|ref|YP_622107.1| cytochrome c oxidase, subunit II [Burkholderia cenocepacia AU 1054]
 gi|105893969|gb|ABF77134.1| cytochrome c oxidase, subunit II [Burkholderia cenocepacia AU 1054]
          Length = 532

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 528


>gi|254247128|ref|ZP_04940449.1| Cytochrome c oxidase, subunit II [Burkholderia cenocepacia PC184]
 gi|124871904|gb|EAY63620.1| Cytochrome c oxidase, subunit II [Burkholderia cenocepacia PC184]
          Length = 532

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 528


>gi|116690867|ref|YP_836490.1| cytochrome c oxidase, subunit II [Burkholderia cenocepacia HI2424]
 gi|116648956|gb|ABK09597.1| cytochrome c oxidase, subunit II [Burkholderia cenocepacia HI2424]
          Length = 532

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 436 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 492

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 493 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 528


>gi|258649209|ref|ZP_05736678.1| putative immunoreactive antigen PG33 [Prevotella tannerae ATCC
           51259]
 gi|260850474|gb|EEX70343.1| putative immunoreactive antigen PG33 [Prevotella tannerae ATCC
           51259]
          Length = 389

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+ +SS       +V ++++ E    +   I + G+ D+      A  N RLS  RA +
Sbjct: 290 FFNLNSSKIASRKDLVNVKEVAEYAKANNTKIRVTGYADSK--TGSASINRRLSEARAAA 347

Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRR--IDILVE 339
               L+K GVS D  I++  G              S NRR  + I VE
Sbjct: 348 VANELVKMGVSRDNIITEAKGGVDTLSPF------SYNRRATVKIAVE 389


>gi|206559146|ref|YP_002229906.1| putative cytochrome c oxidase [Burkholderia cenocepacia J2315]
 gi|198035183|emb|CAR51057.1| putative cytochrome c oxidase [Burkholderia cenocepacia J2315]
          Length = 524

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 428 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 484

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 485 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 520


>gi|119896707|ref|YP_931920.1| putative peptidoglycan-associated lipoprotein [Azoarcus sp. BH72]
 gi|119669120|emb|CAL93033.1| putative peptidoglycan-associated lipoprotein [Azoarcus sp. BH72]
          Length = 172

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 216 LFETTRTGILIS-IIDQRN-----TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268
           +   T +G  I+ + D  N        FD  S +   +   +++  G  LA + +  + +
Sbjct: 41  VTANTPSGSGIAALTDPNNILSKRNVFFDFDSYVIKADAKPLVEAHGRFLAQNPQMKMLV 100

Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
           +G+ D    R     N  L   RA +  Q L+  G  E +I  +S     + +       
Sbjct: 101 QGNADE---RGSREYNLALGQKRADAVKQALLLLGAKEAQIESVS-LGEEKPRCTESSEA 156

Query: 329 --SANRR 333
             + NRR
Sbjct: 157 CFAQNRR 163


>gi|153006246|ref|YP_001380571.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029819|gb|ABS27587.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 274

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 20/113 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +    ++   LQK+ + L  +  + +  +G+ D    R  A+ N  L   RA SA
Sbjct: 173 FGFDQANLTADSQGTLQKLADCLKATPAKRVVAQGYADE---RGTAQYNVALGNRRAESA 229

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILVED 340
            + L   G        + G          + + S         NRR++  VE 
Sbjct: 230 RKYLEDLG--------VGGKTETVSFGEENALCSEATESCWEQNRRVEFQVER 274


>gi|170699781|ref|ZP_02890814.1| cytochrome c oxidase, subunit II [Burkholderia ambifaria IOP40-10]
 gi|170135308|gb|EDT03603.1| cytochrome c oxidase, subunit II [Burkholderia ambifaria IOP40-10]
          Length = 535

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA + 
Sbjct: 439 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQAV 495

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 496 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 531


>gi|296410000|gb|ADH15776.1| OmpP6 [Haemophilus haemolyticus]
          Length = 137

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277
           T  G  +S +  + NT  F         E + +L      L  +    + + G+TD    
Sbjct: 25  TFGGYSVSDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAYLNATPAAKVLVEGNTDE--- 81

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           R     N  L   RA +    L   GV   ++  +S +   +  +    +   S NR
Sbjct: 82  RGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVS-YGEEKPAVLGHDEAAYSKNR 137


>gi|108813332|ref|YP_649099.1| PAL/OmpA-family membrane protein [Yersinia pestis Nepal516]
 gi|108776980|gb|ABG19499.1| PAL/OmpA-family membrane protein [Yersinia pestis Nepal516]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRL 320
           +    +L  S VS      + G+   R 
Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRP 529


>gi|319945500|ref|ZP_08019760.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Lautropia
           mirabilis ATCC 51599]
 gi|319741286|gb|EFV93713.1| OmpA/SmpA/OmlA family outer membrane lipoprotein [Lautropia
           mirabilis ATCC 51599]
          Length = 361

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 239 KSSSIPLPETIVVLQKIGEVLA-HSTE---VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
              +  LPE    L    EVL  H      V+ + GHTD          N RLS+ RA +
Sbjct: 241 SGVADILPEDRQKLMDFAEVLKGHGPNEHQVLKLMGHTDRL---GNRAYNERLSMRRAVT 297

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSA--------NRRIDILVED 340
               L + GV      ++               D   +         +RR+ + + D
Sbjct: 298 VRDELQRLGVRLP--MEVRAMGATEDFSRGCHQDTAGAEKTVQCLQPDRRVSVELLD 352


>gi|256828231|ref|YP_003156959.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577407|gb|ACU88543.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 585

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  +     +    L +I  ++         I + G++D+         N  +S  RA 
Sbjct: 484 FETGNLSLDEQGGRDLARIVAMMKEPKNSGKTIVLVGYSDSV---GAYASNLAVSRKRAE 540

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           +  +   K G+ +  +   +G      +         NRR++I
Sbjct: 541 AVAEAFRKRGLQDVVVLA-AGEEGAIERNDIRAGREKNRRVEI 582


>gi|76818337|ref|YP_337657.1| OmpA family protein [Burkholderia pseudomallei 1710b]
 gi|76582810|gb|ABA52284.1| OmpA family protein [Burkholderia pseudomallei 1710b]
          Length = 252

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             LP     L +I   L    + I    + G+TD          N +LSL RA +    L
Sbjct: 144 DLLPAGRAELDRIAATLEQQYQHIRSVRVTGYTDRL---GTDAYNRQLSLARAETIRAYL 200

Query: 300 MKSGVSEDRISKIS-GFAHH 318
              G+  D I     G A  
Sbjct: 201 TTRGLPGDLIVAQGLGKADP 220


>gi|284042327|ref|YP_003392667.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
 gi|283946548|gb|ADB49292.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684]
          Length = 913

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S+  LP  +  L+++   L  +   I   GHTDA       R        RA +  
Sbjct: 814 FATDSARLLPAGVRHLRRVAADLDGA-RSIRSVGHTDARGDATANRAL---GRARAAAVC 869

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            VL ++GV        +G +  R   A+    + NRR++++V
Sbjct: 870 AVLRRAGVRARLPVASAGESRPRADDATPAGRALNRRVELVV 911


>gi|257482066|ref|ZP_05636107.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 65

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           N  LS  RA S    L   GV +  +  + G    +   ++      + NRR+++ ++  
Sbjct: 2   NMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQNRRVEVNLKPI 60

Query: 342 QG 343
            G
Sbjct: 61  PG 62


>gi|114797840|ref|YP_758889.1| OmpA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114738014|gb|ABI76139.1| ompA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 180

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               FD        +   +L++    L       + + G+ D    R     N  L   R
Sbjct: 70  ERVYFDLDQYGLDSDDQEILKRQAAWLNAYPNVRVLVAGNADE---RGTREYNLALGERR 126

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332
           A +A   L+  GVS  R+  +S +   R     ++D   + NR
Sbjct: 127 ASAAKDYLVSLGVSASRVDTVS-YGKERPVAGGSNDESWAMNR 168


>gi|325299222|ref|YP_004259139.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324318775|gb|ADY36666.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 370

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDN 284
           + +   R    F  +SS         +  +   L  H+   +S+ G+ D +     AR N
Sbjct: 262 VKVQPMRQNIFFLINSSEIRTSEQSKVNNLIAYLKEHTDAKVSLCGYADKN--TGNARIN 319

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSANRRIDILV 338
            +LS +RA +  + L   G++ DRI+ I       +     +       R+ I +
Sbjct: 320 KKLSQERAEAVAEALKAEGIAADRIT-IDYKGDTEQPFNVIEE-----NRVTICI 368


>gi|320107209|ref|YP_004182799.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319925730|gb|ADV82805.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4]
          Length = 257

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
                     FD  S     +   + Q+    LA      + I G+ D    R  A  N 
Sbjct: 145 EFHQNVQDVFFDYDSYDLRLDAGALAQRAASYLAAHPAIKVVIGGYCDE---RGSAEYNL 201

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
            L  +RA +A   L+ +GVS +R+ ++  +   +      ++     NRR
Sbjct: 202 ALGENRANAAKTALVTAGVSPNRL-RVISYGKEKQFCTEQNETCYQQNRR 250


>gi|294853085|ref|ZP_06793757.1| predicted protein [Brucella sp. NVSL 07-0026]
 gi|294818740|gb|EFG35740.1| predicted protein [Brucella sp. NVSL 07-0026]
          Length = 78

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 262 STEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFA 316
             + I++RG TD + P         +++  RA + Y  L+  GV   RI    + +  +A
Sbjct: 1   MPKHINVRGLTDNNCPPPGDT----QVARVRALAIYNWLINQGVPASRITISYAPVKDYA 56

Query: 317 HHRLKIASDPMNSANRRIDILVEDR 341
            +       P    NRR+DI +  +
Sbjct: 57  SNAPLS---PGRVLNRRVDIEILRK 78


>gi|186475045|ref|YP_001856515.1| cytochrome c oxidase subunit II [Burkholderia phymatum STM815]
 gi|184191504|gb|ACC69469.1| cytochrome c oxidase, subunit II [Burkholderia phymatum STM815]
          Length = 557

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 18/101 (17%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           SS+P      +        AH     ++ G TDA+     A  N +L+  RA +    L 
Sbjct: 466 SSLPTDAKAAIEAAAAYAKAHPDAKFALSGFTDAT---GSADKNAKLAKARAEAVRDALK 522

Query: 301 KSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
            +G++ED I       I+G A  +            RR++I
Sbjct: 523 AAGIAEDHIILKKPETITGGADAKEA----------RRVEI 553


>gi|170691537|ref|ZP_02882702.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M]
 gi|170143742|gb|EDT11905.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M]
          Length = 552

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TDA      A  N +L+  RA + 
Sbjct: 452 FDTGKSTLPADAKAAVEAASAYAKAHPDAKFTLSGFTDA---SGSADTNAKLAKSRAEAV 508

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G    +            RR++I
Sbjct: 509 RDALKAAGIAEDHIILKKPETITGGGDAKEA----------RRVEI 544


>gi|321472579|gb|EFX83548.1| hypothetical protein DAPPUDRAFT_239461 [Daphnia pulex]
          Length = 193

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
            +   +        PE+  VL+K    L    E    + G+ D    R     N +L   
Sbjct: 78  EDRVFYGFDRYDLAPESRAVLEKQAAWLLKYPEREAEVAGYCD---VRGTVEYNDKLGQR 134

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
           RA +A   L   GV   R+S IS +      +        + N R+ I
Sbjct: 135 RADAARDYLTSLGVHAGRLSTIS-YGKRITLVPGHTEEIYAQN-RVAI 180


>gi|254512328|ref|ZP_05124395.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221536039|gb|EEE39027.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 515

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 17/241 (7%)

Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
              IG  +  +  Q     +        S   ++  T D      L       +      
Sbjct: 277 PFAIGIASHAETGQTRALPLAGGCGHALSATRQSVKTEDYPLTAPLFLYLPQRRLPRAAR 336

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-ISIID 230
            +    LS    + +++   +    + I   L G   D +   +    T  G+  +  + 
Sbjct: 337 QFLAYALSDAAQVVIRQAGFVDQSPEMIGMGLQG---DRLANAISTGGTEVGLEELQRMI 393

Query: 231 QRNTPM--------FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           +   P+        F+  SS P  ++   + ++ + L + T   S       S     A 
Sbjct: 394 ETLRPLSRLSLSFRFEPGSSHPDAQSRSNILQLAQALENGTLDASHLAFVGFSDGDGAAA 453

Query: 283 DNWRLSLDRAYSAYQVL---MKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337
            N R++L RA +    +   +++ + +     + GF         D       NRR+++ 
Sbjct: 454 SNTRIALRRARTVRNAVLGAVETSIPDSIEITVEGFGEAMPMACDDTEWGRKVNRRVEVW 513

Query: 338 V 338
           V
Sbjct: 514 V 514


>gi|225620698|ref|YP_002721956.1| OmpA family protein [Brachyspira hyodysenteriae WA1]
 gi|225215518|gb|ACN84252.1| OmpA family protein [Brachyspira hyodysenteriae WA1]
          Length = 213

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              T  G    I++     +F    +       +   ++ E L  +  V I +  HT   
Sbjct: 72  IRDTERG---RILETTPKVIFKFVETNMPATAEMSFNQVVEFLEKNPNVNIVLEAHTSNR 128

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN--RR 333
                   N+ LS+ RA +    L+  G+  +R+ + S       +  +      N  RR
Sbjct: 129 --GKAYPYNYNLSVVRAKNGKAYLLAKGIPSERVIE-SPLGEALPEYPT-----QNELRR 180

Query: 334 IDILV 338
            + ++
Sbjct: 181 YEFVI 185


>gi|222095784|ref|YP_002529841.1| hypothetical protein BCQ_2124 [Bacillus cereus Q1]
 gi|221239842|gb|ACM12552.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 331

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 2/179 (1%)

Query: 44  LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103
           L  FFLV+ I++          +         +  A   I +  +    ++  K+  +  
Sbjct: 73  LFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFGALSSISNPTSEKTTATSKKVASNTT 132

Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163
           E    +  +L+    ++K Q Q  E         +Q +  + +  +  ++ ++  +  D 
Sbjct: 133 EQKDSDKKELEKKEADEKAQKQEDEKRQAEEQARKQEDEKRQADEQARKQQEEQKRLADE 192

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
           +    +EE          K    + +KR  D   +         AD   +    E  R 
Sbjct: 193 QTRKQQEEQKRQADEQARK--QQEEQKRQADEQARKQQEEQKRQADEQARKQQEEQKRQ 249


>gi|114327771|ref|YP_744928.1| peptidoglycan-associated lipoprotein [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315945|gb|ABI62005.1| peptidoglycan-associated lipoprotein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 196

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   +  + S    +    L +    L       + + G+ D    R     N  L   R
Sbjct: 91  DRVFYAFNQSSLSTDAQGTLDRQSAWLQKYPQVSVQVAGNCDD---RGTEEYNLALGQRR 147

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANR 332
           A +A   L+  GV+  RI+ IS        +  D    + NR
Sbjct: 148 ANAARDFLVAKGVASSRITTISYGKDRPTAVGDDEQAWAQNR 189


>gi|114327542|ref|YP_744699.1| hypothetical protein GbCGDNIH1_0878 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315716|gb|ABI61776.1| hypothetical protein GbCGDNIH1_0878 [Granulibacter bethesdensis
           CGDNIH1]
          Length = 132

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH----TDASPFRNIARDNWRLSLDR 291
           F + S++  P    V+    E+        +++ G+    +D +           L+  R
Sbjct: 30  FLQDSAVLDPAATQVVSYAAELAKQYPGLKVTVSGYGGKSSDQASTVTETP----LAKLR 85

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
           A +    L+  G+++ RI +            ++      RR+DI
Sbjct: 86  ANAVRDQLVSDGIAKSRIERSVHTVDASNLAVAE------RRVDI 124


>gi|83311569|ref|YP_421833.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
 gi|82946410|dbj|BAE51274.1| Outer membrane protein and related peptidoglycan-associated lipo
           protein [Magnetospirillum magneticum AMB-1]
          Length = 239

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ + +     T+ VL  +   L  +   VI ++G TDA      A  N  LS  RA + 
Sbjct: 66  FNHAKADITGSTMQVLWGLAPALKAAEPGVIRVQGFTDA---SGKAAYNRILSEKRAQAV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L K GV   RI  +SG    +          A RR++I
Sbjct: 123 ADQLRKLGV-TARIE-VSGQGIVKGGKKGHKDQGA-RRVEI 160


>gi|213420489|ref|ZP_03353555.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 59

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342
           RLS  RA S    L+  GV   RI + SG        ++      + NRR++I +   Q
Sbjct: 2   RLSQQRADSVASSLITQGVDASRI-RTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ 59


>gi|153865051|ref|ZP_01997721.1| conserved hypothetical protein [Beggiatoa sp. SS]
 gi|152145454|gb|EDN72279.1| conserved hypothetical protein [Beggiatoa sp. SS]
          Length = 296

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARD 283
           S++  +NT  F+   +    +   VL+ +   +   +   + I I GHTD S   +    
Sbjct: 179 SLMSGQNTVTFEPGKASLSEQAKRVLELLAIEICQKSFQIKRIVITGHTDNSQLDDFKN- 237

Query: 284 NWRLSLDRAYSAYQVLMK 301
             +LS +RA +    LMK
Sbjct: 238 --KLSRERALAVADYLMK 253


>gi|78186499|ref|YP_374542.1| peptidoglycan-associated lipoprotein [Chlorobium luteolum DSM 273]
 gi|78166401|gb|ABB23499.1| peptidoglycan-associated lipoprotein [Chlorobium luteolum DSM 273]
          Length = 171

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSL 289
               ++  SS    +    LQ+    +       +   I GH D    R  +  N  L  
Sbjct: 66  GDVFYEFDSSELAADAQTQLQQNASWMNS--NAAASTMIEGHCDE---RGTSEYNIALGE 120

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333
            RA +A + +++ GV   RI  +S +   +   A     +   NRR
Sbjct: 121 RRASTAKEYIVRLGVPSSRIETVS-YGEEKPFAAGHDEAAWSKNRR 165


>gi|258593789|emb|CBE70130.1| Outer membrane lipoprotein omp16 precursor
           (peptidoglycan-associated lipoprotein) (modular protein)
           [NC10 bacterium 'Dutch sediment']
          Length = 184

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
               FD   S    +    L +  + L  +    I I GH D    R  A  N  L   R
Sbjct: 77  KDIFFDFDKSTIRDDAKSSLNEDLQWLNANPTAQIVIEGHCDE---RGTAEYNLGLGERR 133

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341
           A +A   +M +G++  RI  +S F   R        ++   NRR   +V++R
Sbjct: 134 AKAAKDYVMAAGINAKRIRTVS-FGKERPFATGHDESAWKWNRRAHFVVDER 184


>gi|189911990|ref|YP_001963545.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167776666|gb|ABZ94967.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 159

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR---LSLDRAYSAYQVLM 300
           P P+ +  LQ + + L  +        H DA       ++N     +S  R+    + L+
Sbjct: 65  PKPDLVR-LQTVADFLNRNRNY---EIHIDAHAVEG--KNNEENIMISEKRSLEVERFLL 118

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
              V  ++I ++  + + +    +    + NRR++I +  
Sbjct: 119 IHFVEPNQIRRLF-YGNTKSPNQTKEHEALNRRVEIQLHP 157


>gi|218897150|ref|YP_002445561.1| hypothetical protein BCG9842_B3160 [Bacillus cereus G9842]
 gi|218544373|gb|ACK96767.1| conserved domain protein [Bacillus cereus G9842]
          Length = 330

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 2/186 (1%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A  GI    +    ++  
Sbjct: 66  FAILSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALLGISAPSSEKTTATST 125

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K +D
Sbjct: 126 KVASNNEEQKDSEKKKELEKKEADEKTQKQEDEKRQAEEQARKQEDEKRQAEEQARKQED 185

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
             +  D +    +EE          K    + +KR  D   +         AD   +   
Sbjct: 186 EERLADEQARKQQEEQKRQADEQARK--QQEEQKRQADEQARKQQEEQKRQADEQARKQQ 243

Query: 217 FETTRT 222
            E  R 
Sbjct: 244 EEQKRQ 249


>gi|167585369|ref|ZP_02377757.1| cytochrome c oxidase, subunit II [Burkholderia ubonensis Bu]
          Length = 514

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 18/77 (23%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-----SKISGFAHHR 319
            +++ G TD       A  N  L+  RA +    L  +GV+ED I       I+G A  +
Sbjct: 447 KLALSGFTDK---SGSADANAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAK 503

Query: 320 LKIASDPMNSANRRIDI 336
                       RR++I
Sbjct: 504 EA----------RRVEI 510


>gi|296447611|ref|ZP_06889531.1| heavy metal translocating P-type ATPase [Methylosinus trichosporium
           OB3b]
 gi|296254876|gb|EFH01983.1| heavy metal translocating P-type ATPase [Methylosinus trichosporium
           OB3b]
          Length = 942

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 19/208 (9%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-TDL 163
            +  NS+ L+    ++                +                 +D        
Sbjct: 723 SVIANSLRLRRSQIDEPAAAGAPRRPERSRRLALAGATAAALAIAAGLAWRDWRPLFPVA 782

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
           E   +  +    P + +    A K   R        S   +G   ++ ++  L   T   
Sbjct: 783 ETPPSPAQREPAPSVVERPAEAPKTDAR--------SGVAAGEGVESKLRAYLESETPPA 834

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
             ++  +      F    +   P     LQ I +VLA          H  A     +  D
Sbjct: 835 RKLAWFELDGVA-FVPREARLQPSAQSRLQAIADVLAT---------HPRARAIVAVHGD 884

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             +LS  RA +    L + GV   R+  
Sbjct: 885 AKKLSKQRAEAVVLALTRLGVDASRLRA 912


>gi|224372379|ref|YP_002606751.1| lipoprotein [Nautilia profundicola AmH]
 gi|223589117|gb|ACM92853.1| lipoprotein [Nautilia profundicola AmH]
          Length = 195

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 214 GVLFETTRTGILISIIDQRNTP--------MFDKSSSIPLPETIVVLQKIGEVLAHST-- 263
            V  +T   G  IS+   +            FD       P+    ++K+ E++ ++   
Sbjct: 61  NVEEQTIGEGTKISVTADQKFAKDLANIVVYFDFDKYNIRPDQWPKVEKLAELIKNNPAN 120

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + I G+ D          N+ L L RA S    L+K GV   +++ IS +        
Sbjct: 121 YTVRIEGNCDEW---GTEEYNYALGLKRANSVKNALIKLGVDPKKLTIIS-YGELNPVCT 176

Query: 324 SDPM--NSANRR 333
           +        NRR
Sbjct: 177 AHAKWCWRKNRR 188


>gi|38146954|gb|AAR11862.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
 gi|38146956|gb|AAR11863.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
 gi|38146958|gb|AAR11864.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
 gi|38146960|gb|AAR11865.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
 gi|38146962|gb|AAR11866.1| peptidoglycan-associated lipoprotein [Ehrlichia canis]
          Length = 141

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   +        +L+K+ +     T   I I GHTD    R     N  L   RA + 
Sbjct: 46  FDFGKATIGDSDKAILEKVIQKAQKDTNTNIVIVGHTDT---RGTDEYNLELGEQRANAV 102

Query: 296 YQVLMKSGVS-EDRI-SKISGFAHHRLKI-ASDPMNSA 330
              +++   S E+RI  +  G +   + + +S+P  + 
Sbjct: 103 KDFIIEHDKSLENRITVQSKGKSEPAVLVYSSNPEEAE 140


>gi|322641772|gb|EFY38406.1| peptidoglycan-associated outer membrane lipoprotein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 178

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD        +   +L      L  +    +++ GH D    R     N  L   RA + 
Sbjct: 74  FDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADE---RGTPEYNISLGERRANAV 130

Query: 296 YQVLMKSGVSEDRISKIS 313
              L   GVS D+IS +S
Sbjct: 131 KMYLQGKGVSADQISIVS 148


>gi|325297548|ref|YP_004257465.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317101|gb|ADY34992.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 487

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD +++        V L  +  V       + + G  D++     A  N  LS  RA  
Sbjct: 388 FFDLNTAHLTDSLQKVNLDALAHVAKKYGLSVKVTGAADSA--TGTASINNALSTARADY 445

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR 332
               L+K G+S + I++    G +++         N ANR
Sbjct: 446 IAGELIKRGLSAESITRTYEGGISYYVP-------NEANR 478


>gi|288817919|ref|YP_003432266.1| peptidoglycan associated lipoprotein [Hydrogenobacter thermophilus
           TK-6]
 gi|288787318|dbj|BAI69065.1| peptidoglycan associated lipoprotein [Hydrogenobacter thermophilus
           TK-6]
 gi|308751517|gb|ADO45000.1| OmpA/MotB domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI--VKGVLFET 219
           D      K+    L   ++    A +   +  DL  ++S  L G+V D+   +K +    
Sbjct: 46  DAIIEAKKKSEEALNKANEALGKANEALNKANDLEGRVSK-LEGIVDDHEKRIKALESRE 104

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
              G    + ++     FD             L  I   +   T  + I G  D    R 
Sbjct: 105 IPKG-GWQL-EEIGAVYFDFDKFNIKKSQAPKLDDIASKIQSDTREVLIVGFADT---RG 159

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            ++ N+ LS+ RA      L K GV   R+ +I+ + 
Sbjct: 160 SSKYNFNLSMYRAQIVASYLAKKGVDIGRM-RIASYG 195


>gi|167950653|ref|ZP_02537727.1| OmpA domain protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 62

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340
           N  LS  RA +    L  +GV+ +R+S   GF   +    ++ +     NRR +++  +
Sbjct: 5   NKDLSHRRAITVMHYLSDNGVAAERLSA-EGFGEEQPISDNESLEGQTMNRRAELIRMN 62


>gi|29346915|ref|NP_810418.1| hypothetical protein BT_1505 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338813|gb|AAO76612.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 362

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284
           + I   +    F  +S+    +    +  + E L  HS   +S+ G+ D          N
Sbjct: 254 VVIEPLKQNIFFALNSAKIQDDQQAKISSLVEYLEKHSAAKVSVTGYADKE--TGNPNIN 311

Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGF-AHHRLKIASDPMNSANRRIDILV 338
             LS  RA +  ++L   GV  DRI  + G+                  R+ I +
Sbjct: 312 MTLSEKRAKNVIEMLKAKGVVADRI--VIGYKGDTVQPYQK----PEENRVCICI 360


>gi|302876037|ref|YP_003844670.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307686755|ref|ZP_07629201.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302578894|gb|ADL52906.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B]
          Length = 234

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 19/124 (15%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
               +   DL   I S LS   A+   + + F+ +   I+I     +    FD       
Sbjct: 48  EDTAEERADLYVNIESALSQQQANP--EVIDFDKSEGRIII-----KTESFFDLGQFTLK 100

Query: 246 PETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
            E I     + EV +   +          I + GHTD   +     DN  LS  RA S  
Sbjct: 101 EEGINTANMLNEVFSKLLKDKNIENAIQYIEVVGHTD---YIGNTIDNRELSTQRAVSFL 157

Query: 297 QVLM 300
             +M
Sbjct: 158 NAMM 161


>gi|260429564|ref|ZP_05783541.1| OmpA/MotB [Citreicella sp. SE45]
 gi|260420187|gb|EEX13440.1| OmpA/MotB [Citreicella sp. SE45]
          Length = 517

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 20/156 (12%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGI-LISIIDQRNTPM--------FDKSSSIPLPETIV 250
                 L  D +   +       G+ L+  +     PM        F+  S     ++  
Sbjct: 364 EELALNLQGDRLANAIAVAEGEGGLALLQHMVTALAPMRRLTTSFRFEPGSVRLDAQSRS 423

Query: 251 VLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
            +Q++   L         +   G +D       A  N  ++  RA +    + ++  + D
Sbjct: 424 NVQQLARSLEAGEYDGRELVFVGFSDGQ---GDADANLEIARKRADAVRTAVEQAAEAAD 480

Query: 308 --RISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338
             RI   +  F         D       NRR+++ V
Sbjct: 481 LDRIGMATEAFGEAMPMACDDTVWGRQVNRRVEVWV 516


>gi|16125000|ref|NP_419564.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|221233721|ref|YP_002516157.1| heat resistant agglutinin [Caulobacter crescentus NA1000]
 gi|13421980|gb|AAK22732.1| OmpA family protein [Caulobacter crescentus CB15]
 gi|220962893|gb|ACL94249.1| heat resistant agglutinin [Caulobacter crescentus NA1000]
          Length = 407

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F     +  PE   V+Q+  +     +   + + GHTD          N +LS  R  + 
Sbjct: 304 FPFDQYVLTPEAQAVVQQAADYAKGGNATRVVVTGHTDT---SGSDAYNRKLSERRGRAV 360

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR--IDI 336
              L+  G++   +  +         + +        NRR  + I
Sbjct: 361 ADGLVGMGLNAATV-AVDWKGEKAPAVETGDGVKEPLNRRSSVSI 404


>gi|311277854|ref|YP_003940085.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1]
 gi|308747049|gb|ADO46801.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1]
          Length = 347

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGE---VLAHSTEVISIRGHTDASPFRNIARDNW 285
            + ++  MF   S+    E    + ++     + + +     + G++D +     A  N 
Sbjct: 226 FNLKSDVMFGYDSATLTNEGKAAINQLYHSPDLQSATGNTTLVIGYSDRT---GSASYNQ 282

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            LS  RA +  + L+  G+S + I +  G         +
Sbjct: 283 ALSARRAQAVAEQLIGLGMSAENI-RTEGRGATDSVTGN 320


>gi|325300582|ref|YP_004260499.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324320135|gb|ADY38026.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170]
          Length = 488

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   +      + +V L  I  ++      I I G  D++   +   ++  LS  RA  
Sbjct: 383 FFVLDTDRLTDNSQLVNLDGIARIVKKHGLRIQIIGAADSATGNDSINNS--LSQRRAAY 440

Query: 295 AYQVLMKSGVSEDRI--SKISGFAHHRLKIAS 324
               L + GV  D+I    + G   +    A+
Sbjct: 441 MAGELRRRGVDADKIETVSVGGINDYNPVEAN 472


>gi|311745705|ref|ZP_07719490.1| putative thrombospondin type 3 repeat:OmpA/MotB [Algoriphagus sp.
           PR1]
 gi|311302419|gb|EAZ79498.2| putative thrombospondin type 3 repeat:OmpA/MotB [Algoriphagus sp.
           PR1]
          Length = 426

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I D      +   S  PL  +      +   +  +  V + ++G+ D          N +
Sbjct: 317 INDGYINVYYAFDSDKPLGYSTSAANYVANFMKKNPGVNVEVKGYADEL---GPEDYNMK 373

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           LS  RA + Y +L+ SGV   R+    G+        S     
Sbjct: 374 LSERRAKAVYDLLIASGVDGSRL-SYKGYGEDTSVDKSSADAR 415


>gi|221065313|ref|ZP_03541418.1| cytochrome c oxidase, subunit II [Comamonas testosteroni KF-1]
 gi|220710336|gb|EED65704.1| cytochrome c oxidase, subunit II [Comamonas testosteroni KF-1]
          Length = 524

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 24/112 (21%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292
              F+   S    +    ++K  E   AH    I++ G  D++     A  N  L+ +RA
Sbjct: 424 QVFFETGKSALDDQAQAAVKKAAEYWKAHKDGKIALSGFVDST---GNADKNAELAKERA 480

Query: 293 YSAYQVLMKSGVSEDR--------ISKISGFAHHRLKIASDPMNSANRRIDI 336
            +  ++L  SG++ DR        I+  +G A  +            RR+DI
Sbjct: 481 KAVAKLLEDSGIAGDRIELRKPETITAAAG-ADQQA-----------RRVDI 520


>gi|291447367|ref|ZP_06586757.1| secreted protein [Streptomyces roseosporus NRRL 15998]
 gi|291350314|gb|EFE77218.1| secreted protein [Streptomyces roseosporus NRRL 15998]
          Length = 215

 Score = 44.5 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+         +  I E +   +   I + G TD     +   D   LS  RA +
Sbjct: 108 LFGKDSAKLSSAANARIAAIAEEIKKQNATKIRVFGFTDNL-GSSAHGDV--LSKQRADA 164

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + VL K  +      +I G+         +++     NRR+++     +G
Sbjct: 165 VHGVLSKQ-LGPTVTYEIRGYGEQYPIASNSNEEGRKKNRRVEVSFPRGEG 214


>gi|319760471|ref|YP_004124409.1| peptidoglycan-associated lipoprotein [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039185|gb|ADV33735.1| peptidoglycan-associated lipoprotein [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 175

 Score = 44.5 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289
            +N   F             +L      L  +    I I GHTD    R     N  L  
Sbjct: 69  SKNIIYFPLDQYNIPSVFFDILDVHAIFLRKNPLHHIIIEGHTDE---RGTPEYNIGLGE 125

Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333
            RAYS  + L   GV  ++IS IS G         ++   S NRR
Sbjct: 126 RRAYSIKKYLQSKGVLSNQISTISYGKEKPVSFGHTEESYSQNRR 170


>gi|10955226|ref|NP_044255.1| hypothetical protein R751p46 [Enterobacter aerogenes]
 gi|1572563|gb|AAC64458.1| Upf30.5 [Enterobacter aerogenes]
          Length = 142

 Score = 44.5 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSS--IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P PE + +L       A +  +I I G T              L+L RA S
Sbjct: 40  FPDSSATFQPTPEALELLAD-----ARNAAIIYISGRTSTLRPSAADE---ALALRRALS 91

Query: 295 AYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           A   L+  GVS  +I    +  A      ++      N+R+DI V
Sbjct: 92  ARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDIEV 136


>gi|114762915|ref|ZP_01442347.1| Outer membrane protein, OmpA/MotB family [Pelagibaca bermudensis
           HTCC2601]
 gi|114544525|gb|EAU47532.1| Outer membrane protein, OmpA/MotB family [Roseovarius sp. HTCC2601]
          Length = 674

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S+   P+    L  +G     V++ +   +  I GHTDA+        N  LS  R
Sbjct: 563 FETGSAAIRPQEAQALAALGNAMKRVISDNPGEVFLIEGHTDAT---GGWGYNLALSDRR 619

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
           A S    L +   V  + +  + G+    L I +
Sbjct: 620 AESVALALTEYFDVPPENMV-LQGYGESDLAIET 652


>gi|206603228|gb|EDZ39708.1| Probable OmpA family protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 232

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  +S       + VL     +L  +    + + GHTD  P       N +L L+
Sbjct: 104 QKDIYFSFNSKKISYANLSVLHAYSRLLRKNPRLALRLYGHTD--PVGGSKF-NHKLGLE 160

Query: 291 RAYSAYQVLMKSGVSEDRIS 310
           RA +A +VL+ +GV   RI 
Sbjct: 161 RALAARRVLLATGVPAKRIF 180


>gi|29349889|ref|NP_813392.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341800|gb|AAO79586.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 363

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +V     + V+ +     + + +   +    F  +S++   +    +  +   +    
Sbjct: 233 EPIVEQPKPQPVVKQPEPESVAVVVEPMKQNIFFALNSALLQKDQQSKIDAMVAYMEKYP 292

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
              ++I G+ D        R N  LS  RA      L   G++ DRI
Sbjct: 293 ASKVAITGYADKE--TGNPRINMTLSEKRAKIVADALKAKGIAADRI 337


>gi|332305765|ref|YP_004433616.1| peptidoglycan-associated lipoprotein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173094|gb|AEE22348.1| peptidoglycan-associated lipoprotein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 185

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
             S+E++ A + +           +  + + A N+   +  E        +++D +    
Sbjct: 25  GPSEEELAAERNRVAAAQAEADRKAEEAKVQAGNMKPMLSPEEVMQKEKSALMDDQ-VVY 83

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    +   +L +    L  +    + I GH D+   R     N  L   RA S 
Sbjct: 84  FDFDRSSVGSKYYALLDQHAAFLVKNPGQSVVIEGHCDS---RGTPEYNIALGERRAKSV 140

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
              LM +GVS  ++S +S +   +    S      + NRR
Sbjct: 141 ETYLMNAGVSASQVSVVS-YGEEKPIDTSGTTAAFAENRR 179


>gi|5759277|gb|AAD51067.1|AF175714_1 immunoreactive 43kD antigen PG32 [Porphyromonas gingivalis]
          Length = 391

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
                +F   S +   + ++ L  + + +  + E +++ G+ D  P  N    N +LS  
Sbjct: 289 TEKAVLFRFDSHVVDKDQLINLYDVAQFVKETNEPVTVVGYAD--PTGNTQY-NEKLSER 345

Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           RA +   VL  K GV  + +  +          +    N    R+ I+
Sbjct: 346 RAKAVVDVLTGKYGVPSE-LISVEWKGDSTQPFSKKAWN----RVVIV 388


>gi|71907423|ref|YP_285010.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71847044|gb|AAZ46540.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 156

 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRA 292
              F   ++        V+ K  E L+ +   I +  G  D          N  L+  RA
Sbjct: 58  KVFFAVGAAALDEADKGVVAKTLEALSANPNAIVLLSGFHDP---SGDPAKNAELAKHRA 114

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-RRIDILVE 339
            S    L+ +GV+ +RI         + +      +    RR++I V+
Sbjct: 115 QSVRDALVAAGVAAERIK------FRKPESTLGAGSPEEGRRVEIRVQ 156


>gi|124516388|gb|EAY57896.1| putative outer membrane protein, OmpA/MotB family [Leptospirillum
           rubarum]
          Length = 232

 Score = 44.5 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  +S       + VL     +L  +    + + GHTD  P  +    N +L L+
Sbjct: 104 QKDIYFSFNSKKISYANLSVLHAYSRLLRKNPRLALRLYGHTD--PVGSSRF-NHKLGLE 160

Query: 291 RAYSAYQVLMKSGVSEDRIS 310
           RA +A +VL+ +GV   RI 
Sbjct: 161 RALAARRVLLATGVPAKRIF 180


>gi|228920870|ref|ZP_04084209.1| Excalibur domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838801|gb|EEM84103.1| Excalibur domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 316

 Score = 44.5 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 53/172 (30%)

Query: 43  VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSI 102
           VL  FFLV+ I++          +         +  A  GI    +    ++  K+  + 
Sbjct: 72  VLFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALLGISAPSSEKTTATSTKVASNN 131

Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162
           +E                +K  ++ +        +++ E  K      + K +D  +  D
Sbjct: 132 EEQKDSEQKKELEKKAADEKTQKQEDEKRQAEEQARKQEDEKRQAEEQARKQEDEKRLAD 191

Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            +    +EE   L      K    ++++  +   K+              + 
Sbjct: 192 EQARKQQEEQKRLADEQARKQQEEQKRQADEQARKQQEEQKRQADEQARKQQ 243


>gi|21328690|gb|AAM48696.1| OmpA family protein [uncultured marine proteobacterium]
          Length = 488

 Score = 44.5 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 87/286 (30%), Gaps = 29/286 (10%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118
           DD  +A++Q    F        KG+         + Q   D  +   +  +         
Sbjct: 227 DDQTQALQQLLRVFEPPRPMPPKGVNTPGRLTVSTDQVAQDTLVQVSLNCDQPMAPADIQ 286

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
                 Q     I      Q       +     E    +     + +S  K E +    L
Sbjct: 287 APAHPLQAPIYLIAAPKKMQNITRAFWAFLLTPEAQDAVRTLGFISRSPKKTEIHGQSGL 346

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
               IL      R +DL       L+ L  +   +  L      G+ I   D ++   F 
Sbjct: 347 LINAILNTDMDMRTEDL------RLAVLNLNGYERMSLAFRFLEGMQIMDADSQSNLQF- 399

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298
                       +   +          +   G +D+      A  N ++SLDRA +    
Sbjct: 400 ---------LKRLF--VAGYFEGRD--VMFVGFSDSQ---GSAEGNVQISLDRARAVRAT 443

Query: 299 LMKSGVSEDRIS---KISGFAHHRLKIASDP--MNSANRRIDILVE 339
            + + + + ++S   ++ G         +D     + NRR++I V+
Sbjct: 444 -IATLLDDSQLSDGFEVLGLGEGLPLACNDTAWGQNQNRRVEIWVK 488


>gi|166710684|ref|ZP_02241891.1| OmpA family outer membrane lipoprotein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 163

 Score = 44.5 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290
            +  +FD  +S   P+ + V+  +G  LA  +   + +RGHTDA   +     N  LS  
Sbjct: 2   NDRIVFDFDTSDIRPDAVRVIDPLGAALAKVSAKDMQVRGHTDA---KGSDDHNQALSER 58

Query: 291 RAYSAYQVLM---KSGVSEDRI 309
           RA +    L    ++G    R+
Sbjct: 59  RANAVLAALRARCRAGGQRKRL 80


>gi|124004173|ref|ZP_01689019.1| putative exported isomerase [Microscilla marina ATCC 23134]
 gi|123990243|gb|EAY29742.1| putative exported isomerase [Microscilla marina ATCC 23134]
          Length = 777

 Score = 44.5 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+ ++T+  +    I+  +     +   L+S + + N   FDK   +        L  + 
Sbjct: 534 KRANATIYSVANAQIMTQLKTRLVQPSYLVSKV-KVNNVYFDKEQKVLDQNAQRTLLSVA 592

Query: 257 EVLAH-STEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
            +L       + + GH D A P          LS  R  +    L++  +  DRI+    
Sbjct: 593 NLLKKNRHYKLELSGHIDPAEPVG--------LSSQRLQNTLDFLLRQRIGVDRIT-TKD 643

Query: 315 FAHHRLKIASDPMNSANRRID 335
           + + +     D     NRRI+
Sbjct: 644 YKNSKPVSIKD--RRRNRRIE 662


>gi|300871117|ref|YP_003785989.1| hypothetical protein BP951000_1505 [Brachyspira pilosicoli 95/1000]
 gi|300688817|gb|ADK31488.1| hypothetical protein BP951000_1505 [Brachyspira pilosicoli 95/1000]
          Length = 197

 Score = 44.5 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 32/160 (20%)

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEV 258
              ++  +  N       + T+ G L+ + D     +FD +SS+    +    L  +  V
Sbjct: 31  KENITNEITTNTNSVYYVQNTKRGKLLILKDP---ILFDSNSSVVNTNKYAETLDYLSLV 87

Query: 259 LAHST-EVISIRGHTDASPFR------------------NIARDNW-RLSLDRAYSAYQV 298
           L  +    I I GH D+S  R                     R+N   LS  R+ +   +
Sbjct: 88  LKSTNILNIYIEGHIDSSEVRYMNKNTVYNLSTTNNILYLYDRNNEVDLSYLRSLAVGDL 147

Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           L  +   ++++  I       L     P    NRR++ ++
Sbjct: 148 LTDN---DNKLKAI---GLQNLIDYGTPE--QNRRVEFVI 179


>gi|294013081|ref|YP_003546541.1| flagellar motor protein [Sphingobium japonicum UT26S]
 gi|292676411|dbj|BAI97929.1| flagellar motor protein [Sphingobium japonicum UT26S]
          Length = 160

 Score = 44.5 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH-TDASPFRNIARDNWRL 287
           ++ R   +F    ++   +    L+ + +  A   E + +    TDA    +   D W L
Sbjct: 58  MEIRAAELFLPGEAVLTEQGRKRLKVVADRFALGRERLEVSSRGTDA---AHRRFDGWDL 114

Query: 288 SLDRAYSAYQVLMKSGVSEDRIS 310
           S  R  +  + L   G+  DR++
Sbjct: 115 SAARLGAVARALKADGIGGDRLA 137


>gi|113475537|ref|YP_721598.1| hypothetical protein Tery_1869 [Trichodesmium erythraeum IMS101]
 gi|110166585|gb|ABG51125.1| hypothetical protein Tery_1869 [Trichodesmium erythraeum IMS101]
          Length = 253

 Score = 44.5 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 51/215 (23%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           + IN +    +  L   +    +  K L    +K S     L A+   +          I
Sbjct: 41  QDINTKYQESVISLESSENRVKQLTKSLDFEKEKSSELYKKLTAETSAR---IPQFPPNI 97

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIV-----VLQKIGEVLAHST-EVISIRGHTDASPFR 278
           +I+  +  +   F   S+             +L+ I E +       + + GHTD  P  
Sbjct: 98  VITAAEGYD---FPSGSAELTDALNKYIRNKLLKNIEENIQKYDVNTVVVIGHTDGQPVA 154

Query: 279 NI----------------------ARDNWRLSLDRAYSAYQVLMK--------SGVSEDR 308
           +                          N  L + RA +  + L           G+   +
Sbjct: 155 DPVSNLDGLVEEVASGSKSIKELQEGSNIDLGIMRALAVVRKLQDIQKSEGRLKGIDPLK 214

Query: 309 ISKISGFAHHRLKIASDPMNSAN-------RRIDI 336
             +   ++   L + +      N       RRI+I
Sbjct: 215 GFRA--YSSGPLTLKNGEFAQPNENPDQQRRRIEI 247


>gi|31795134|ref|NP_857992.1| putative outer membrane protein [uncultured bacterium]
 gi|49176934|ref|YP_025437.1| hypothetical protein pJP4_73 [Ralstonia eutropha JMP134]
 gi|72384319|ref|YP_293672.1| hypothetical protein Reut_D6517 [Ralstonia eutropha JMP134]
 gi|77993246|ref|YP_358836.1| putative outer membrane protein [IncP-1beta multiresistance plasmid
           pB8]
 gi|84310702|ref|YP_447032.1| hypothetical protein pTP6_37 [uncultured bacterium]
 gi|115345512|ref|YP_771697.1| hypothetical protein Bamb_6620 [Burkholderia ambifaria AMMD]
 gi|121582564|ref|YP_974093.1| hypothetical protein Ajs_4259 [Acidovorax sp. JS42]
 gi|319765131|ref|YP_004129067.1| hypothetical protein Alide_4488 [Alicycliphilus denitrificans BC]
 gi|13661673|gb|AAK38017.1| Upf30.5 [Comamonas testosteroni]
 gi|31746378|emb|CAD97503.1| putative outer membrane protein [uncultured bacterium]
 gi|39777514|gb|AAR31089.1| Upf30.5 [Ralstonia eutropha JMP134]
 gi|72123672|gb|AAZ65815.1| hypothetical protein Reut_D6517 [Ralstonia eutropha JMP134]
 gi|77733999|emb|CAI10763.1| putative outer membrane protein [IncP-1beta multiresistance plasmid
           pB8]
 gi|84094982|emb|CAJ15604.1| Upf30.5 protein [uncultured bacterium]
 gi|89211885|gb|ABD63300.1| Upf30.5 [Proteus mirabilis]
 gi|89211891|gb|ABD63305.1| Upf30.5 [Bordetella bronchiseptica]
 gi|115286689|gb|ABI92163.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
 gi|120608620|gb|ABM44358.1| conserved hypothetical protein [Acidovorax sp. JS42]
 gi|317119818|gb|ADV02305.1| hypothetical protein Alide_4488 [Alicycliphilus denitrificans BC]
          Length = 143

 Score = 44.5 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSS--IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P PE + +L       A +  +I I G T              L+L RA S
Sbjct: 41  FPDSSATFQPTPEALELLAD-----ARNAAIIYISGRTSTLRPSAADE---ALALRRALS 92

Query: 295 AYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           A   L+  GVS  +I    +  A      ++      N+R+DI V
Sbjct: 93  ARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDIEV 137


>gi|326410244|gb|ADZ67308.1| TraQ protein [Brucella melitensis M28]
 gi|326553537|gb|ADZ88176.1| TraQ protein [Brucella melitensis M5-90]
          Length = 78

 Score = 44.5 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 262 STEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI----SKISGFA 316
             + I++RG TD S P         +++  RA + Y  L+  GV   RI    + +  +A
Sbjct: 1   MPKHINVRGLTDNSCPPPGDT----QVARVRALAIYNWLINQGVPASRITISYAPVKDYA 56

Query: 317 HHRLKIASDPMNSANRRIDILVEDR 341
            +       P    NRR+DI +  +
Sbjct: 57  SNAPLS---PGRVLNRRVDIEILRK 78


>gi|330948387|gb|EGH48647.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 64

 Score = 44.5 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
           N  LS  RA S    L   GV +  +  + G    +   ++      + NRR+++ ++  
Sbjct: 1   NMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVNGRAQNRRVEVNLKPI 59

Query: 342 QG 343
            G
Sbjct: 60  PG 61


>gi|148244623|ref|YP_001219317.1| peptidoglycan-associated lipoprotein [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326450|dbj|BAF61593.1| peptidoglycan-associated lipoprotein [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 189

 Score = 44.5 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR-NTP 235
           P S    +  + K   +++ +   S  + L  D+ +K +    T + I+ S  +   N  
Sbjct: 28  PKSSVVTIEDRMKNVQENVFETDKSNFTSLRVDDRIKSI-PSITESFIVTSFRETDVNFI 86

Query: 236 MFDK--SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           ++     + I       +++    +  + T  + + GHTD    R     N  L  +RA 
Sbjct: 87  LYFSDDGTEINKTSIKQIIKHANFMRNNPTLKLRLEGHTDE---RGTREYNLALGENRAL 143

Query: 294 SAYQVLMKSGV--SEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337
           +  ++L   G+     RI  IS F   +        ++   NRR++ +
Sbjct: 144 NVKEIL---GLYDLSSRIEVIS-FGEEKPMTQQHDEDAWQKNRRVEFV 187


>gi|320537035|ref|ZP_08037014.1| OmpA family protein [Treponema phagedenis F0421]
 gi|320146110|gb|EFW37747.1| OmpA family protein [Treponema phagedenis F0421]
          Length = 165

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   + +    T   L  I E L       + I GH+             +LSL RA + 
Sbjct: 65  FAPDTYVIDSFTAHKLDVIAEQLKAQNITHVKITGHSAKLDTAKAEN---KLSLQRAVAV 121

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            +     G+ +    ++ G   +    +   +     NRR++I
Sbjct: 122 AEYFRSIGLFDADSMELEGLGANEPAGSHAEITKRHYNRRVEI 164


>gi|116006769|ref|YP_787953.1| hypothetical protein pBP136_p33 [Bordetella pertussis]
 gi|115500076|dbj|BAF33472.1| Upf30.5 [Bordetella pertussis]
          Length = 143

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSS--IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P PE + +L       A +  +I I G T              L+L RA S
Sbjct: 41  FPDSSATFQPTPEALELLAD-----ARNAAIIYISGRTSTLRPSAADE---ALALRRALS 92

Query: 295 AYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           A   L+  GVS  +I    +  A      ++      N+R+DI V
Sbjct: 93  ARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDIEV 137


>gi|328676839|gb|AEB27709.1| Outer membrane protein A precursor [Francisella cf. novicida Fx1]
          Length = 392

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTSSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF +          +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYDDTLGGIPKSDPRNQRVE 381


>gi|239943905|ref|ZP_04695842.1| putative secreted protein [Streptomyces roseosporus NRRL 15998]
 gi|239990359|ref|ZP_04711023.1| putative secreted protein [Streptomyces roseosporus NRRL 11379]
          Length = 219

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F K S+         +  I E +   +   I + G TD     +   D   LS  RA +
Sbjct: 112 LFGKDSAKLSSAANARIAAIAEEIKKQNATKIRVFGFTDNL-GSSAHGDV--LSKQRADA 168

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343
            + VL K  +      +I G+         +++     NRR+++     +G
Sbjct: 169 VHGVLSKQ-LGPTVTYEIRGYGEQYPIASNSNEEGRKKNRRVEVSFPRGEG 218


>gi|78186498|ref|YP_374541.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like [Chlorobium luteolum DSM 273]
 gi|78166400|gb|ABB23498.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins-like protein [Chlorobium luteolum DSM
           273]
          Length = 154

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
               FD   S    + +  L+     + A+ ++ + + GH D    R     N  L   R
Sbjct: 49  GDVFFDFDQSALRMDAVSQLKNNAAWMDANRSKRVIVEGHCDE---RGTNEYNMALGERR 105

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
           A SA + ++  G+S +RI  +S +   +     +++   + NRR
Sbjct: 106 ASSAKEYIVSLGISPERIETLS-YGEEKPFAQGSTEEAWAQNRR 148


>gi|224024901|ref|ZP_03643267.1| hypothetical protein BACCOPRO_01632 [Bacteroides coprophilus DSM
           18228]
 gi|224018137|gb|EEF76135.1| hypothetical protein BACCOPRO_01632 [Bacteroides coprophilus DSM
           18228]
          Length = 502

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +S+    E+  + +  +  V       + + G  D     +   D+  LSL RA  
Sbjct: 390 FFYLNSAQLTDESQSINIDALARVAVKYNLSVRVTGAADEETGTSAVNDS--LSLKRANY 447

Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSANRRIDIL 337
               L++ GVS  +I      G + +  + A+      N ++++L
Sbjct: 448 ISDQLLQRGVSSGKIVVDSKGGISDYSPREAN-----RNTKVELL 487


>gi|254374174|ref|ZP_04989656.1| outer membrane associated protein [Francisella novicida GA99-3548]
 gi|151571894|gb|EDN37548.1| outer membrane associated protein [Francisella novicida GA99-3548]
          Length = 393

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTSSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF +          +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYDDTLGGIPKSDPRNQRVE 382


>gi|109900220|ref|YP_663475.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109702501|gb|ABG42421.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 274

 Score = 44.5 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 8/165 (4%)

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           L   ++   D   +        KE+      L+++++   +       L   + S    +
Sbjct: 73  LFISNDMNNDNALAQAQSGLRQKEQQLVALRLAQQRMYQQENPDNHTALTASLESH--NV 130

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265
            A +  +    E T     I+ I+      F   S          L  I  ++  S +  
Sbjct: 131 TAHHGTEQQSTEQTTESHSITPIETNIQ--FRTGSHAVESHYHRQLDLIAALVRQSPDLQ 188

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           I++ G+ D    R  +  N  LS  RA S  + L K  V   ++ 
Sbjct: 189 ITLAGYADE---RGSSHYNQALSQQRAISVKRYLTKQHVPGAQLH 230


>gi|154252498|ref|YP_001413322.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156448|gb|ABS63665.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 277

 Score = 44.5 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F        PE   V+ +I   +A +T  +S+ GHTD       +  N  L   RA S  
Sbjct: 182 FGFDKYNLTPEAQSVIDQI---VAETTGPLSVIGHTDT---SGSSAYNQALGQRRADSVS 235

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
             L   G     +          L + +        NRR
Sbjct: 236 NALTAQG---KELCSAVSRGETELAVQTGDGVREPLNRR 271


>gi|317504762|ref|ZP_07962722.1| major outer membrane protein OmpA [Prevotella salivae DSM 15606]
 gi|315664144|gb|EFV03851.1| major outer membrane protein OmpA [Prevotella salivae DSM 15606]
          Length = 389

 Score = 44.5 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 9/201 (4%)

Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
           R+E+N      +Q S    +      +K   L     L   + K      P +   K L+
Sbjct: 185 RMEDNFDGNEMAQLSN--SHHGRGWEDKDNHLYAEIGLTFKLGKATWNKTPDVDAIKALS 242

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
             +   L      +++  +G +   + +          +    +    +  F+       
Sbjct: 243 QSQIDALNSQLNDLNAE-NGKLRKELAEKPKTTVLTKSLK-EFVATPISVFFNIGKIDVA 300

Query: 246 PETIVVL--QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                ++  + + +    +   I + G+ D+S        N RLS  RA +  + L+K G
Sbjct: 301 -LLKDLVNVRALAKYAIENNSHILVTGYADSS--TGTPAINQRLSEQRANTIVEELVKMG 357

Query: 304 VSEDRISKISGFAHHRLKIAS 324
           V+   I   +G     L+   
Sbjct: 358 VNRSNIRTAAGGGVKMLEYPD 378


>gi|255535771|ref|YP_003096142.1| OmpA/MotB [Flavobacteriaceae bacterium 3519-10]
 gi|255341967|gb|ACU08080.1| OmpA/MotB [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score = 44.5 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+ +S+   PE+   L  I  +LA   +  I I  ++D    +     N  LS  RA + 
Sbjct: 328 FEFNSTKLTPESQTQLDNIKAILAAYPDAKIKIGAYSDK---KGDDAANKTLSRQRADAV 384

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328
              L  +     ++    G+   R  +A    +
Sbjct: 385 KSALASA-----QVISAEGYGEERATVAETASD 412


>gi|171057549|ref|YP_001789898.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170774994|gb|ACB33133.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6]
          Length = 230

 Score = 44.5 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           FD  SS         L+ + +    +  V+ +RG TD +          R++ +RA +  
Sbjct: 117 FDYGSSRVN-LAPTFLRAVLDQARTAPLVV-LRGRTDGTQDVAAEG---RIARERAQAVK 171

Query: 297 QVLMKSGVSEDRIS---KISGFAHHRLKIASDPMNSANRRIDILV 338
             L+ +G+  +RI    + +G   H     +    + NRR++I V
Sbjct: 172 SHLVAAGLDPNRIRTTWQPTG--DHAADNGTPDGQARNRRVEIEV 214


>gi|285018292|ref|YP_003376003.1| xsa-associated protein [Xanthomonas albilineans GPE PC73]
 gi|283473510|emb|CBA16013.1| probable xsa-associated protein [Xanthomonas albilineans]
          Length = 280

 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 38/213 (17%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K       +D +                  + A     RL      IS+ L  + A +  
Sbjct: 54  KSPSGTSPSDEKVVDTAAPTQRNERSVGAAVNASHDANRLATYESDISTVLKNISALSQK 113

Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV------ 265
            G   + T   I     D   + +F   S         +L+  + +++A +         
Sbjct: 114 YGFSVDATTNTI-----DLGQSGLFPLGSDRLSATQERLLRNYVADLIALTQNDPAMAPL 168

Query: 266 --ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--------KSGVSE--------- 306
             I++ G+TD          N  LS  R+     VL+         +G            
Sbjct: 169 KSITVVGYTDP---AGSYLFNLDLSARRSERLMCVLLATLEKQSSATGAPTMTEDTLQTI 225

Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             + ++ G++      A     +A+RR+ + ++
Sbjct: 226 RHLFRVGGYS----ADAQKESAAASRRLALKLD 254


>gi|90423193|ref|YP_531563.1| OmpA/MotB-like porin [Rhodopseudomonas palustris BisB18]
 gi|90105207|gb|ABD87244.1| OmpA/MotB-like porin [Rhodopseudomonas palustris BisB18]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLD 290
            +   F+  S+     ++  L K+G  +A      I + G     PF   ++   RLS  
Sbjct: 343 EDKISFEPKSAELSKASLAALTKLGSAIALCQPVQIEVAG-----PFDGGSKKALRLSQK 397

Query: 291 RAYSAYQVLMKSGVSEDRISKIS 313
           RA +    L K GV   +++ ++
Sbjct: 398 RAEAVVGSLSKLGVGAAKLTAVA 420


>gi|302381877|ref|YP_003817700.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192505|gb|ADL00077.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    E   V+ +            + + G+ D       A  N  LS  RA + 
Sbjct: 280 FDWDRSDLTAEARSVVTQAATYAKSGRPTRVLVVGYADT---SGSAAYNVGLSNRRARTV 336

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              L+ +GV+   +  + G     L   +        NRR  I
Sbjct: 337 ADALVSNGVNGG-VIALDGKGETNLARPTADGVREPLNRRATI 378


>gi|312961581|ref|ZP_07776081.1| OmpA domain protein [Pseudomonas fluorescens WH6]
 gi|311284164|gb|EFQ62745.1| OmpA domain protein [Pseudomonas fluorescens WH6]
          Length = 306

 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE------VISIRGHTDASPFRNIARD 283
           +     +F+   S P   +    + + +++            + + GHTD  P  + A  
Sbjct: 183 ELSGDVVFNFGKSGPQDISAAGHKALAQLITALQHDDAQIKQMQVVGHTD--PIGDEAA- 239

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRID 335
           N +L   RA +   +L+  G+ E  IS  S   +    + S   N          NRR+ 
Sbjct: 240 NQQLGQRRADTLRSLLIAKGIPESIISASSA-GNREPVVYSCYGNREQRIACYAPNRRVV 298

Query: 336 ILVEDRQ 342
           + VE  Q
Sbjct: 299 VTVELGQ 305


>gi|302384369|ref|YP_003820192.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302194997|gb|ADL02569.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 385

 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S    E   V+ +            + + G+ D       A  N  LS  RA + 
Sbjct: 283 FDWDRSDLTAEARSVVTQAATYAKSGRPTRVLVVGYADT---SGSAAYNVGLSNRRARTV 339

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336
              L+ +GV+   +  + G     L   +        NRR  I
Sbjct: 340 ADALVSNGVNGG-VIALDGKGETNLARPTADGVREPLNRRATI 381


>gi|332826497|gb|EGJ99326.1| hypothetical protein HMPREF9455_00359 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 619

 Score = 44.1 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S+ LP  I  L+  + E   H+ E + I G+ D          N+ LS  RA   
Sbjct: 500 FDFDKSVLLPSAIQELKMWLAETDLHNIESLIIDGYADEM---GTEDYNYDLSRRRAEVV 556

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSANRRIDI----LVEDRQG 343
            Q L + G+     ++++G    ++ + SD     P  + NR   I    +  +R+ 
Sbjct: 557 AQWLSQQGIKAR--ARVTGKG--KIFVNSDSPLEVPFYNDNRNTSIWNHKIWMNRKA 609


>gi|332881530|ref|ZP_08449179.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680528|gb|EGJ53476.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 377

 Score = 44.1 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217
           C   D   ++N   +      + +       +K + DL K ++   +  V     + V  
Sbjct: 215 CSHADQIAALNATISSMEAEAAGKDRALQNAQKTISDLQKDLNDCKNKKVPTTTTQAV-- 272

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276
                 ++I          F +SSS      +  + ++   L  ++   +SI G+  ASP
Sbjct: 273 -EKSEYVVI----------FRQSSSKVDALQMPNIDRLASYLKKNSSAKVSISGY--ASP 319

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309
             N    N +LS  RA +   +L+K  G+S +RI
Sbjct: 320 EGNAKF-NQKLSEKRAEAVKNILVKEYGISANRI 352


>gi|21230907|ref|NP_636824.1| hypothetical protein XCC1451 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769094|ref|YP_243856.1| hypothetical protein XC_2787 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112519|gb|AAM40748.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574426|gb|AAY49836.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 238

 Score = 44.1 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 20/237 (8%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + +    +        W I YAD MT +M  FL      +    T  A+ +      +  
Sbjct: 5   MARGRRRNKDDGEKPFW-ISYADLMTAMMVLFL------SAMAVTIAAVTRVVEGPAEIR 57

Query: 77  MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI--GSTNQKKQYQRLENNIFYL 134
               + + ++                D+ I+  +V            +    L   +  +
Sbjct: 58  AREIQSVCEQLGRDLSGVSEIQINCADQRISFPTVGTFGFNSYRLPAEADGALAQLVPAV 117

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKST---DLEKSINKEENY--FLPPLSKEKILAMKRK 189
            N+   E  K  L +   +G    K     +L  S+ + E     L   SK K LA+   
Sbjct: 118 LNAADGELGKKWLKQVVVEGYTDTKGGYLYNLHLSLQRSEWVLCLLMDPSKNKSLALSD- 176

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI--IDQRNTPMFDKSSSIP 244
              + L++     L+G V+ N  +    E+ R  + I    +D+ ++   D  S   
Sbjct: 177 ---EQLSRVRKLFLAGGVSFNNQRTTADESRRVELRIQFYGVDEPHSAHLDTGSDFM 230


>gi|298384145|ref|ZP_06993706.1| outer membrane protein [Bacteroides sp. 1_1_14]
 gi|298263749|gb|EFI06612.1| outer membrane protein [Bacteroides sp. 1_1_14]
          Length = 363

 Score = 44.1 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +V     + V+ +     + + +   +    F  +S++   +    +  +   +    
Sbjct: 233 EPIVEQPKPQPVVKQPEPEPVAVVVEPMKQNIFFALNSALLQEDQQSKIDAMVAYMEKYP 292

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
              ++I G+ D        R N  LS  RA      L   G++ DRI
Sbjct: 293 ASKVAITGYADKE--TGNPRINMTLSEKRAKIVADALKAKGIAADRI 337


>gi|55418024|ref|YP_133924.1| putative outer membrane protein precursor [Plasmid pB3]
 gi|54969578|emb|CAG26014.1| putative outer membrane protein precursor [Plasmid pB3]
 gi|116874771|emb|CAJ98564.1| putative outer membrane protein precursor [uncultured bacterium]
          Length = 143

 Score = 44.1 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSS--IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P PE + +L       A +  +I I G T              L+L RA S
Sbjct: 41  FPDSSATFQPTPEALELLAD-----ARNAAIIYISGRTSTLRPSAADE---ALALRRALS 92

Query: 295 AYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338
           A   L+  GVS  +I    +  A      ++      N+R+DI V
Sbjct: 93  ARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDIEV 137


>gi|317476092|ref|ZP_07935344.1| hypothetical protein HMPREF1016_02327 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907730|gb|EFV29432.1| hypothetical protein HMPREF1016_02327 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 484

 Score = 44.1 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 236 MFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  +S    P  +V L ++  V       +S+ G  D+        +   LS+ RA  
Sbjct: 385 FFELGTSHLTDPSQLVNLDELARVAKKYGLSVSVIGAADSMTGTVSVNN--ALSVSRAGY 442

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANR 332
             + L+K GV  D+I +    G + +         N ANR
Sbjct: 443 IAEELIKRGVLGDKIVQTHQGGISDYTP-------NEANR 475


>gi|218234366|ref|YP_002366871.1| excalibur domain family [Bacillus cereus B4264]
 gi|218162323|gb|ACK62315.1| excalibur domain family [Bacillus cereus B4264]
          Length = 287

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 57/161 (35%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI D  +    ++  
Sbjct: 66  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALSGISDPSSEKTTATST 125

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K ++
Sbjct: 126 KVASNNEEPKDSEQKKELEKKEADEKTQKQEDEKRLAEEQARKQEDEKRQADEQARKQQE 185

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             K    E++  ++E        + +    ++K++  + A+
Sbjct: 186 EQKRQADEQARKQQEEQKRQADEQARKQQEEQKRQADEQAR 226


>gi|153832073|ref|ZP_01984740.1| OmpA family protein [Vibrio harveyi HY01]
 gi|148871688|gb|EDL70529.1| OmpA family protein [Vibrio harveyi HY01]
          Length = 1563

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   ++      +  L  + + L+     V+ I GH   +     +  N  LS  RA
Sbjct: 627 RLVFPFDNNQVQAPHLSYLAAVDKELSKIPNAVVEIEGHACQN---GDSEYNQNLSQQRA 683

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDILV 338
               +      VS+ R      F   R  +          +   + NRR+++ +
Sbjct: 684 QHVAEFFSS--VSDIRF-----FGERRPIVEVPNNEIKRENAQLNINRRVEVRI 730


>gi|61655673|gb|AAX49323.1| PlpD [Mannheimia haemolytica]
 gi|61655675|gb|AAX49324.1| PlpD [Mannheimia haemolytica]
          Length = 217

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 117 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 173

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHH 318
           + +    L++ GV   +I  +  G A+ 
Sbjct: 174 SNTVKARLVQQGV-TAQIEAVGYGKANQ 200


>gi|61655677|gb|AAX49325.1| PlpD [Mannheimia haemolytica]
          Length = 217

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 117 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 173

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHH 318
           + +    L++ GV   +I  +  G A+ 
Sbjct: 174 SNTVKARLVQQGV-TAQIEAVGYGKANQ 200


>gi|61655683|gb|AAX49328.1| PlpD [Mannheimia haemolytica]
          Length = 217

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 117 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 173

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHH 318
           + +    L++ GV   +I  +  G A+ 
Sbjct: 174 SNTVKARLVQQGV-TAQIEAVGYGKANQ 200


>gi|61655681|gb|AAX49327.1| PlpD [Mannheimia haemolytica]
 gi|61655685|gb|AAX49329.1| PlpD [Mannheimia glucosida]
          Length = 217

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
              +FD   +    +   V+  + + L  S  + + + G+TD       A  N  LS  R
Sbjct: 117 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 173

Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHH 318
           + +    L++ GV   +I  +  G A+ 
Sbjct: 174 SNTVKARLVQQGV-TAQIEAVGYGKANQ 200


>gi|313887403|ref|ZP_07821093.1| outer membrane protein 40 [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923171|gb|EFR33990.1| outer membrane protein 40 [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 381

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            N   F   S+      ++ +    E +  +   I I G+ D          N  LS  R
Sbjct: 279 ENVVAFRIGSAKIDKNQMINVYNSAEAVKANGGKIYIVGYADEQ--TGTPEINMSLSERR 336

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           A +    L+ + GV+ D I  I          A++  N    R+ I+
Sbjct: 337 AEAVKNALINNYGVNPDNIV-IDFKGDTVQPFATNEWN----RVAII 378


>gi|91201946|emb|CAJ75006.1| similar to H+-driven flagellar motor component MotB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 236

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 27  PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLMTASKGIF 84
                 W + Y D +T+L+ FF+++  ++  + D  K   +       G +++  SK   
Sbjct: 8   GPETPGWLLTYGDMVTLLVTFFVMLISLSTINVDKYKEAMKQVQASIGGTHVLEGSKQPL 67

Query: 85  DEQNPPERSSQNKIDLS 101
           D+    +     ++D  
Sbjct: 68  DKDAKSDIVDIKEVDFP 84


>gi|302036309|ref|YP_003796631.1| hypothetical protein NIDE0942 [Candidatus Nitrospira defluvii]
 gi|300604373|emb|CBK40705.1| exported protein of unknown function, OmpA family [Candidatus
           Nitrospira defluvii]
          Length = 273

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+        +    LQ+  E L       I ++G+TD    R+    N  L + RA + 
Sbjct: 110 FEIGRKGLTDDGKAALQRHAEFLKSERDWGILLQGYTDQQGSRSF---NKILGMKRAETV 166

Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRI 334
            Q LM  GV E  I  +S      L    SD     NRR+
Sbjct: 167 KQHLMALGVPESSIRTVSLGEEGALCIDNSDVCRRMNRRV 206


>gi|253997443|ref|YP_003049507.1| peptidoglycan-associated lipoprotein [Methylotenera mobilis JLW8]
 gi|253984122|gb|ACT48980.1| peptidoglycan-associated lipoprotein [Methylotenera mobilis JLW8]
          Length = 191

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +++   + L  ++   + ++G+TD    R     N  L   RA S 
Sbjct: 88  FDFDSDSVKAEYRPIVEAHAKYLLANSNAKVVLQGNTDE---RGTREYNVSLGQRRAVSV 144

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340
            +     GV + +I  +S     +     A +  +  NRR++++ E+
Sbjct: 145 KKSFNLLGVQDKQIETVS-LGEEKASANCADEACHQQNRRVEVVYEN 190


>gi|218510314|ref|ZP_03508192.1| peptidoglycan-associated lipoprotein [Rhizobium etli Brasil 5]
 gi|327193465|gb|EGE60361.1| peptidoglycan-associated lipoprotein [Rhizobium etli CNPAF512]
          Length = 177

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + LA      I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSSSIRADASQTLDRQAQWLARYPNYQITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 125 AAAAKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|269963847|ref|ZP_06178160.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831420|gb|EEZ85566.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1563

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292
             +F   ++      +  L  + + L+     V+ I GH   +     +  N  LS  RA
Sbjct: 627 RLVFPFDNNQVQAPHLSYLAAVDKELSKIPNAVVEIEGHACQN---GDSEYNQNLSQQRA 683

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDILV 338
               +      VS+ R      F   R  +          +   + NRR+++ +
Sbjct: 684 QHVAEFFSS--VSDIRF-----FGERRPIVEVPNNEIKRENAQLNINRRVEVRI 730


>gi|260752881|ref|YP_003225774.1| hypothetical protein Za10_0642 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552244|gb|ACV75190.1| hypothetical protein Za10_0642 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 218

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            D     +F    +I   +    L +  +  A ++    I  H           D W L+
Sbjct: 109 QDFLADDLFSPQDAILTDKGKAALAQFAKKAARASAYFMIESH--GIGNGTARFDKWELA 166

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             R  S  + L  SGV E+ +      A       +
Sbjct: 167 AARTASVARQLKSSGVDENHLK--IMMAPDNPLADN 200



 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 73/204 (35%), Gaps = 15/204 (7%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNPPE 91
           W + Y D +  ++ FF++++       +   ++   FN            G    Q+   
Sbjct: 9   WTVSYIDLLMTILGFFVLLYAREHDPKEVADSLRSAFNHEDHNKQKNNGAGGSTLQSDVN 68

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTN--------QKKQYQRLENNIFYLSNSQQSEHC 143
           +++     +  ++  T N+ D    +T+               L +++F   ++  ++  
Sbjct: 69  KTASPADAMKANDTNTSNAKDDNKSTTDNCLNKTGAACPTQDFLADDLFSPQDAILTDKG 128

Query: 144 KNSLTRDSEKGKD-----LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           K +L + ++K        + +S  +     + + + L       +    +   + +   K
Sbjct: 129 KAALAQFAKKAARASAYFMIESHGIGNGTARFDKWELAAARTASVARQLKSSGVDENHLK 188

Query: 199 ISSTLSGLVADNIVKGVLFETTRT 222
           I       +ADN  + +L   ++ 
Sbjct: 189 IMMAPDNPLADNG-QHLLITISKE 211


>gi|229150407|ref|ZP_04278624.1| Excalibur domain protein [Bacillus cereus m1550]
 gi|228633104|gb|EEK89716.1| Excalibur domain protein [Bacillus cereus m1550]
          Length = 289

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 57/161 (35%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI D  +    ++  
Sbjct: 68  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALSGISDPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K ++
Sbjct: 128 KVASNNEEPKDSEQKKELEKKEADEKTQKQEDEKRLAEEQARKQEDEKRQADEQARKQQE 187

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
             K    E++  ++E        + +    ++K++  + A+
Sbjct: 188 EQKRQADEQARKQQEEQKRQADEQARKQQEEQKRQADEQAR 228


>gi|157164304|ref|YP_001466351.1| Omp18 [Campylobacter concisus 13826]
 gi|112800114|gb|EAT97458.1| Omp18 [Campylobacter concisus 13826]
          Length = 168

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNI 280
           ++ +I  Q  +  FD        +   V+     V   +      I + G+ D       
Sbjct: 51  LIANIESQVKSVYFDFDKFNIKADQQGVVSSNASVFNQADAQALSIKVEGNCDEW---GT 107

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              N+ L L RA SA   L+++GVS DRI  +  F          +   ++ NRR D  V
Sbjct: 108 DEYNYALGLKRAKSAKDALVRNGVSADRI-AVVSFGESNPVCTDKTKACDAQNRRADFKV 166

Query: 339 ED 340
             
Sbjct: 167 LP 168


>gi|289678321|ref|ZP_06499211.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 62

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
            LS  RA S    L   GV +  +  + G    +   ++      + NRR+++ ++   G
Sbjct: 1   DLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPG 59


>gi|166368621|ref|YP_001660894.1| hypothetical protein MAE_58800 [Microcystis aeruginosa NIES-843]
 gi|166090994|dbj|BAG05702.1| hypothetical protein MAE_58800 [Microcystis aeruginosa NIES-843]
          Length = 185

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 36/145 (24%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV-----ISIRGHTDASPFRN 279
           I I ++     F   S+   P     +++ I   +   T+      I + GHTD    + 
Sbjct: 34  IVIDEKSGKFKFQSGSAELNPALKTYIRQRIIPAIETITKDREIDFIQVIGHTDGQGIQK 93

Query: 280 IAR---------------------DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
            +                       N  L L RA +  Q +  +G  ++   +   F+  
Sbjct: 94  TSNLDKNIESVASRKQSVKMLVPGSNTDLGLMRALAVVQEIENTGKLKNVKFRA--FSAG 151

Query: 319 RLKIASDPMNSAN-------RRIDI 336
           +L + S  + + N       RRI+I
Sbjct: 152 QLYLPSGNLAAVNRDADASRRRIEI 176


>gi|327405464|ref|YP_004346302.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327320972|gb|AEA45464.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 463

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
           + ++  FD + S       +++  + + +  +  ++ + G+TD     N    N +LS  
Sbjct: 24  KASSVFFDLNKSELKSGGQMMVDSLVKSMNGTDFILEVYGYTDT---SNTLDYNRKLSQS 80

Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343
           R  +    L    ++   I     F       +S+     +  RR+DI +   +G
Sbjct: 81  RIDAVLAYLKSKQIAPKEIRT---FNEGEDFNSSNQSKNAAFQRRVDIYLTPMEG 132


>gi|109899245|ref|YP_662500.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109701526|gb|ABG41446.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 186

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 8/162 (4%)

Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
             P  +E      R    Q  A + ++  + + A N+   +  E        ++++ +  
Sbjct: 24  SGPSEEELAAESNRVAAAQAEADRKAAEEAKVQAGNMKPMLSPEEVMQKEKSALMEDQ-V 82

Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293
             FD   S    +   +L +    L  +    + I GH D    R     N  L   RA 
Sbjct: 83  VYFDFDRSSVSSKYYSLLDQHAAFLVKNPGQAVVIEGHCDN---RGTPEYNIALGERRAK 139

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           S    LM +GVS  ++S +S +   +    S      + NRR
Sbjct: 140 SVETYLMNAGVSASQVSVVS-YGEEKPVDTSGTAAAFAENRR 180


>gi|251733467|emb|CAR82483.1| pal [Agrobacterium vitis]
          Length = 87

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             S+    +    L +  + L   +   I++ GH D    R     N  L   RA S   
Sbjct: 1   TDSTSIRADAQQTLDRQAQWLQRYSQYPITVEGHADE---RGTREYNLALGARRAASTKA 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  G+  +RI  IS +   R     D
Sbjct: 58  YLVSRGIPANRIKTIS-YGKERPVATCD 84


>gi|329895780|ref|ZP_08271156.1| hypothetical protein IMCC3088_1693 [gamma proteobacterium IMCC3088]
 gi|328922142|gb|EGG29499.1| hypothetical protein IMCC3088_1693 [gamma proteobacterium IMCC3088]
          Length = 44

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340
           +++  G++E R   ++GFA       ++       NRR++I++++
Sbjct: 1   MIINQGLAELRF-SVTGFADTEPVDTNETPASRQRNRRVEIIIDN 44


>gi|218516473|ref|ZP_03513313.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           8C-3]
          Length = 170

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + LA      I++ GH D    R     N  L   R
Sbjct: 61  DRIFFDTDSSSIRADASQTLDRQAQWLARYPNYQITVEGHADE---RGTREYNLALGARR 117

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 118 AAAAKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 160


>gi|254457405|ref|ZP_05070833.1| OmpA family protein [Campylobacterales bacterium GD 1]
 gi|207086197|gb|EDZ63481.1| OmpA family protein [Campylobacterales bacterium GD 1]
          Length = 252

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
               E+ + LQ + + ++   +  + I GHTD       +  N  L L RA + Y+++  
Sbjct: 157 KLTDESKISLQTMIDEVSQRDKPYMQIIGHTDT---AGPSEKNKILGLKRAKAVYEMIKN 213

Query: 302 SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338
           S +S  +I  +  ++   L I    + +   NRR++I V
Sbjct: 214 SDISYSKID-VDSYSESNLAIKTEDETVEQLNRRVEIFV 251


>gi|237722141|ref|ZP_04552622.1| outer membrane porin F [Bacteroides sp. 2_2_4]
 gi|229447951|gb|EEO53742.1| outer membrane porin F [Bacteroides sp. 2_2_4]
          Length = 379

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + R+  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 237 DMRDRVNALKGENESLKRDLVEARNKKPEVIVKKEAGFVPRLV-----VVFNIGKSNISK 291

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
              + ++ + + +  + +V +I G+ D       A  N +LS  RA +   +++   GV 
Sbjct: 292 REYMNIEAMAKGIKATDKVFTITGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGVP 349

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             ++ K+            D   S   R+ I+
Sbjct: 350 ASQL-KVDYKGGVSNMFYDDAKLS---RVAIV 377


>gi|288801265|ref|ZP_06406720.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331876|gb|EFC70359.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 401

 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 83/244 (34%), Gaps = 21/244 (8%)

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
            FN +      A+             S+ +    ++  IT    D     T +    +  
Sbjct: 149 SFNSYNAKPDNAATAKLGLDLTFNLGSKKQWQFYVEPSITYALNDFDGMETVRLDVRRSF 208

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
                        +    S      + +D  +   L   IN   N     L+ +      
Sbjct: 209 VQLNAGFVYKF--KGSNGSHNFTLAQLRDQAEIDGLNAKINGLRN----DLNVKDAELNG 262

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
           +  R+ DL K +    +  VA      V+ E   T    ++ + + T +F +  S+  P 
Sbjct: 263 KDARIADLQKALQDANNRPVA------VVKEVKET----TVTNLQPTVLFRQGKSVIDPA 312

Query: 248 TIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
               ++ I   +  H T  + IRG+  ASP  N    N +LS  RA +    L+K   ++
Sbjct: 313 QYAPIELIASYMRNHPTAKVEIRGY--ASPEGNAEF-NQKLSTARAEAVKTALVKRYKIA 369

Query: 306 EDRI 309
             R+
Sbjct: 370 ASRL 373


>gi|283856291|ref|YP_162352.2| hypothetical protein ZMO0617 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775287|gb|AAV89241.2| hypothetical protein ZMO0617 [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 218

 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            D     +F    +I   +    L +  +  A ++    I  H           D W L+
Sbjct: 109 QDFLADDLFSPQDAILTDKGKAALAQFAKKAARASAYFMIESH--GIGNGTARFDKWELA 166

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             R  S  + L  SGV E+ +      A       +
Sbjct: 167 AARTASVARQLKSSGVDENHLK--IMMAPDNPLADN 200



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN-LMTASKGIFDEQNPPE 91
           W + Y D +  ++ FF++++       +   ++   FN    N       G    Q+   
Sbjct: 9   WTVSYIDLLMTILGFFVLLYAREHDPKEVADSLRSAFNHEDHNRQKNNGAGGSALQSDVN 68

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTN--------QKKQYQRLENNIFYLSNSQQSEHC 143
           +++     +  ++  T N+ D    +T+               L +++F   ++  ++  
Sbjct: 69  KTAPPADAMKANDTNTSNAKDDNKSTTDNCLTKTGAACPTQDFLADDLFSPQDAILTDKG 128

Query: 144 KNSLTRDSEKGKD-----LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           K +L + ++K        + +S  +     + + + L       +    +   + +   K
Sbjct: 129 KAALAQFAKKAARASAYFMIESHGIGNGTARFDKWELAAARTASVARQLKSSGVDENHLK 188

Query: 199 ISSTLSGLVADNIVKGVLFETTRT 222
           I       +ADN  + +L   ++ 
Sbjct: 189 IMMAPDNPLADNG-QHLLITISKE 211


>gi|241761156|ref|ZP_04759245.1| hypothetical protein ZmobDRAFT_0322 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374775|gb|EER64236.1| hypothetical protein ZmobDRAFT_0322 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 218

 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            D     +F    +I   +    L +  +  A ++    I  H           D W L+
Sbjct: 109 QDFLADDLFSPQDAILTDKGKAALAQFAKKAARASAYFMIESH--GIGNGTARFDKWELA 166

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             R  S  + L  SGV E+ +      A       +
Sbjct: 167 AARTASVARQLKSSGVDENHLK--IMMAPDNPLADN 200



 Score = 37.9 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 33  WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN-LMTASKGIFDEQNPPE 91
           W + Y D +  ++ FF++++       +   ++   FN    N       G    Q+   
Sbjct: 9   WTVSYIDLLMTILGFFVLLYAREHDPKEVADSLRSAFNHEDHNRQKNNGAGGSALQSDVN 68

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTN--------QKKQYQRLENNIFYLSNSQQSEHC 143
           +++     +  ++  T N+ D    +T+               L +++F   ++  ++  
Sbjct: 69  KTASPADAMKANDTNTSNAKDDNKSTTDNCLTKTGAACPTQDFLADDLFSPQDAILTDKG 128

Query: 144 KNSLTRDSEKGKD-----LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198
           K +L + ++K        + +S  +     + + + L       +    +   + +   K
Sbjct: 129 KAALAQFAKKAARASAYFMIESHGIGNGTARFDKWELAAARTASVARQLKSSGVDENHLK 188

Query: 199 ISSTLSGLVADNIVKGVLFETTRT 222
           I       +ADN  + +L   ++ 
Sbjct: 189 IMMAPDNPLADNG-QHLLITISKE 211


>gi|2895292|gb|AAC38192.1| DotK [Legionella pneumophila]
          Length = 134

 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265
           ++ D   KG+   +     LISI     + +F   S      +  +L +I   L      
Sbjct: 1   MMTDLNKKGIKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAFLKQF-RK 56

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           I+I   + +S + ++ R+   L+L R+    + L   GV   RI    G    +   +  
Sbjct: 57  IAITVTSYSSKYVSVKRER-ALTLARSRVVSEYLWSQGVDS-RIIFTQGLGSDKPITSYT 114

Query: 326 --PMNSANRRIDI 336
                S N R++I
Sbjct: 115 LGGDRSPNARVEI 127


>gi|296158523|ref|ZP_06841353.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
 gi|295891091|gb|EFG70879.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1]
          Length = 359

 Score = 43.7 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+    +  LP     L  +   L ++     + I G+ D          N  LS+ RA 
Sbjct: 247 FNGGDEAAMLPAGKRQLDDVATGLKNAPALHELKITGYADRL---GDKSYNLDLSMQRAR 303

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI-----ASDPM---NSANRRIDI 336
           +  + L   GVS        G       +       D +    + NRR++I
Sbjct: 304 TVERYLRAHGVSLP--MTAQGRGSANPLVDCRRTKRDALMQCLAPNRRVEI 352


>gi|304393352|ref|ZP_07375280.1| outer membrane lipoprotein Omp16 [Ahrensia sp. R2A130]
 gi|303294359|gb|EFL88731.1| outer membrane lipoprotein Omp16 [Ahrensia sp. R2A130]
          Length = 174

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   F   S+    +    L K    L+      I + GH D    R     N  L   R
Sbjct: 65  DRVFFTTDSTSLTGDARATLDKQATWLSRYGNYSIVVEGHADE---RGTREYNLALGARR 121

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GV+  RI  IS F   R     + ++  S NRR
Sbjct: 122 AAATRDYLVARGVNRGRIRTIS-FGKERPVAVCNDISCFSQNRR 164


>gi|296126314|ref|YP_003633566.1| OmpA family protein [Brachyspira murdochii DSM 12563]
 gi|296018130|gb|ADG71367.1| OmpA family protein [Brachyspira murdochii DSM 12563]
          Length = 200

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269
           + +      T  G    +++     +F    +       +   ++ E L  +T   I + 
Sbjct: 53  LPENTYIRDTDRG---RVLETNPKIIFKLVETNIPASADITFAQVMEFLDKNTNANIILE 109

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMN 328
            HT           N+ LS+ RA +  + L+  GV+ +R I    G A       +D   
Sbjct: 110 AHTSNRGI--AYPYNYNLSVVRAKNGKKYLLDKGVASERVIESPLGEALPEYPTQNDL-- 165

Query: 329 SANRRIDILV 338
              RR + ++
Sbjct: 166 ---RRYEFVI 172


>gi|154174275|ref|YP_001408803.1| Omp18 [Campylobacter curvus 525.92]
 gi|112803716|gb|EAU01060.1| Omp18 [Campylobacter curvus 525.92]
          Length = 168

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNI 280
           ++ +I  Q     FD        +    +     +   +      I + G+ D       
Sbjct: 51  LIANIESQVKNVYFDFDKFNIKADQQGTVSANAAIFNQADAQALSIKVEGNCDEW---GT 107

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338
              N+ L L RA S    L+++GVS DRI  +  F          +   ++ NRR +  V
Sbjct: 108 DEYNYALGLKRAKSTKDALVRNGVSADRI-AVVSFGESNPVCTDKTKACDAQNRRAEFKV 166

Query: 339 ED 340
             
Sbjct: 167 LP 168


>gi|126730914|ref|ZP_01746723.1| OmpA family protein [Sagittula stellata E-37]
 gi|126708630|gb|EBA07687.1| OmpA family protein [Sagittula stellata E-37]
          Length = 198

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   S          +       + S     I GHTD+   R     N +LS      A
Sbjct: 100 FFATDSYKISKHGQAQIANF--FRSSSAVGFVIAGHTDS---RASDAYNMKLSY---NRA 151

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             V   +      I+ + G+       ++      + NRR++IL
Sbjct: 152 LAVARVARAVGANITDVRGYGERMPVASNATAAGMAKNRRVEIL 195


>gi|118497351|ref|YP_898401.1| OmpA family protein [Francisella tularensis subsp. novicida U112]
 gi|195536039|ref|ZP_03079046.1| outer membrane associated protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779140|ref|ZP_03246486.1| outer membrane associated protein [Francisella novicida FTG]
 gi|118423257|gb|ABK89647.1| OmpA family protein [Francisella novicida U112]
 gi|194372516|gb|EDX27227.1| outer membrane associated protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208744940|gb|EDZ91238.1| outer membrane associated protein [Francisella novicida FTG]
          Length = 392

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF +          +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYDDTLGGIPKSDPRNQRVE 381


>gi|190893274|ref|YP_001979816.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           CIAT 652]
 gi|190698553|gb|ACE92638.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli
           CIAT 652]
          Length = 178

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + LA      I++ GH D    R     N  L   R
Sbjct: 69  DRIFFDTDSSSIRADASQTLDRQAQWLARYPNYQITVEGHADE---RGTREYNLALGARR 125

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 126 AAAAKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 168


>gi|254372716|ref|ZP_04988205.1| outer membrane associated protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570443|gb|EDN36097.1| outer membrane associated protein [Francisella novicida GA99-3549]
          Length = 393

 Score = 43.7 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF +          +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYDDTLGGIPKSDPRNQRVE 382


>gi|332716442|ref|YP_004443908.1| outer membrane lipoprotein omp16 [Agrobacterium sp. H13-3]
 gi|325063127|gb|ADY66817.1| outer membrane lipoprotein omp16 [Agrobacterium sp. H13-3]
          Length = 177

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    LQ+  + LA      I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSTSIRADAQQTLQRQAQWLARYPKYAITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L   GV   R+  IS +   +     D ++  S NRR
Sbjct: 125 AAATRDFLASQGVPASRMKTIS-YGKEKPVAVCDDISCWSQNRR 167


>gi|300773379|ref|ZP_07083248.1| major outer membrane protein OmpA [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759550|gb|EFK56377.1| major outer membrane protein OmpA [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 394

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   +S    ET V L    +V+    + +   I G+ D          N RLS+ RA +
Sbjct: 294 FKIGNSEVSNETRVNLGFFAKVIREGDQQVVYRITGYADKG--TGTPEINQRLSMARAEA 351

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
              +L+    V   +++ ++      +   +DP  S 
Sbjct: 352 VKNILVNEFAVPARQLATVAAGGVDNMYY-NDPKLSR 387


>gi|126661870|ref|ZP_01732869.1| peptidoglycan-associated lipoprotein [Flavobacteria bacterium
           BAL38]
 gi|126625249|gb|EAZ95938.1| peptidoglycan-associated lipoprotein [Flavobacteria bacterium
           BAL38]
          Length = 260

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           I   +     +++V  V        +++          F   S   +PE+  VL+++ ++
Sbjct: 124 IEKEIVEEGQNSLVNQVSIAKVGDKLIL------KNLHFYNRSGNFVPESRPVLEELLKI 177

Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +  +    I I+GH       ++          RA + Y  L+  G++++R+     F  
Sbjct: 178 MLDNPNLKIEIQGHICCQKGTDVEDTA----KVRALAVYNYLINKGINKNRL-SYKSFGS 232

Query: 318 HRL 320
            R 
Sbjct: 233 SRP 235


>gi|89899949|ref|YP_522420.1| OmpA/MotB [Rhodoferax ferrireducens T118]
 gi|89344686|gb|ABD68889.1| OmpA/MotB [Rhodoferax ferrireducens T118]
          Length = 181

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 226 ISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFR 278
           IS +D  N+P+      F   +       + +++   + LA + +  + + G+ D    R
Sbjct: 61  ISPLDDANSPLAKRSVFFGFDNFQIRSSDLPLIEAHAKYLAANKSAKVRLEGNADE---R 117

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336
                N  L   RA +  + L   GV +  +  +S F   +   A  ++   + NRR+D+
Sbjct: 118 GGREYNLALGQKRAEAVRRSLRLLGVPDSSLEAVS-FGMEKPVDAGHNEDAWAKNRRVDL 176


>gi|332184172|gb|AEE26426.1| OmpA family protein [Francisella cf. novicida 3523]
          Length = 392

 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +    + +  S    ++++G+             N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVKFIKDSNIGSVTVKGYASQGQTGGEFDIYNQKLSKKRAEA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF +          +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYDDTLGGIPKSDPRNQRVE 381


>gi|307566204|ref|ZP_07628655.1| OmpA family protein [Prevotella amnii CRIS 21A-A]
 gi|307345097|gb|EFN90483.1| OmpA family protein [Prevotella amnii CRIS 21A-A]
          Length = 230

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 38/230 (16%)

Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193
           +   + ++  +N     S+   DL     L        +  +  + K++       K   
Sbjct: 1   MRKIKLAKSDENDSNPFSQSTGDLM--ASLLFIFILLLSSLMLQVKKQEDSDRALTKNYA 58

Query: 194 DLAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252
            +  ++   L     D++ V   + ++T   +         + +FD + +   P    +L
Sbjct: 59  KIKTQLYIDLEHEFKDSLKVWNAVIDSTELAVRFQ----EPSTLFDYNKTDLKPRFAAIL 114

Query: 253 QKIGE----VLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
                    +L+          I I GHTD+         N  LS DR  S     +   
Sbjct: 115 HDFFPRYMALLSKPQYKDNIEEIRIEGHTDS---SGGYIYNMELSQDRTRSVLAFCL--- 168

Query: 304 VSEDRISK-----------ISGFAHHRLKIASD--PMNSANRRIDILVED 340
              ++I++            +G +     I  D       +RR++  +  
Sbjct: 169 ---NQITRKDFEWAKYAITANGLSSSHPIIGKDGKEDADRSRRVEFKIRT 215


>gi|93005426|ref|YP_579863.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
 gi|92393104|gb|ABE74379.1| OmpA/MotB [Psychrobacter cryohalolentis K5]
          Length = 218

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDR 291
              F K SS    E  + L  +   L    T  + I GH       +   R N  L+ +R
Sbjct: 86  RAFFAKGSSELSKEYQLELDTVALKLQEYYTATMRIEGHASVDEMSDTKLRPN-SLARNR 144

Query: 292 AYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334
           A      L+ K  +  +R++  +  A  +   +SD       NRR+
Sbjct: 145 ALIVKNYLVLKHKIDPERLNTFNYDAE-QPITSSDTEEGKSMNRRV 189


>gi|294338941|emb|CAZ87285.1| Conserved hypothetical protein; putative OmpA/MotB domain
           [Thiomonas sp. 3As]
          Length = 169

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +         L+++ E +A     + I G+ DA+     A  N  L+  RA +  
Sbjct: 76  FASGKADLAAGADAALKQVSEAVAQ-GHTVVINGYHDAT---GSAALNAELAKKRAMAVR 131

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             L+  GV  DRI+          +       +  RR+++ V+
Sbjct: 132 DALVAQGVPADRITL-----EKPAETTGGASAAEARRVEVTVK 169


>gi|146301157|ref|YP_001195748.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146155575|gb|ABQ06429.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101]
          Length = 420

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD +SS P   ++  +  + + L ++      I G+ D          N  LS  RA + 
Sbjct: 320 FDFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEI---GKTSYNTELSRKRAEAV 376

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
            +V + +G+   R++ I+      +   S       RR+   V+
Sbjct: 377 KKVAVNAGIDASRLNVIANGEDTSVNKNSKEARQIVRRVTFQVK 420


>gi|71906332|ref|YP_283919.1| OmpA/MotB [Dechloromonas aromatica RCB]
 gi|71845953|gb|AAZ45449.1| OmpA/MotB [Dechloromonas aromatica RCB]
          Length = 184

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASP 276
           + T    +I+   + N   F   S+         L+ I E ++A  T  + + G+ + + 
Sbjct: 64  DETEEAPVIA---EENAVFFTLGSAALSHSGTQKLEIIAERLIADRTLHVLLVGYANDN- 119

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334
               +  N  +S +R  +    L K GV  ++I ++      +      S       RR+
Sbjct: 120 --GSSSFNLAVSDNRLATVAAFLRKRGVHGEQI-RVQALGSEKNLSNCRSSKCRQKFRRV 176

Query: 335 DILVEDRQ 342
           D+++ +++
Sbjct: 177 DLVIRNKK 184


>gi|253569743|ref|ZP_04847152.1| outer membrane protein [Bacteroides sp. 1_1_6]
 gi|251840124|gb|EES68206.1| outer membrane protein [Bacteroides sp. 1_1_6]
          Length = 363

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
             +V     + V+ +     + + +   +    F  +S++   +    +  +   +    
Sbjct: 233 EPVVEQPKPQPVVKQPEPEPVAVVVEPMKQNIFFALNSALLQKDQQSKIDAMVAYMEKYP 292

Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
              ++I G+ D        R N  LS  RA      L   G++ DRI
Sbjct: 293 ASKVAITGYADKE--TGNPRINMTLSEKRAKIVADALKAKGIAADRI 337


>gi|163816540|ref|ZP_02207904.1| hypothetical protein COPEUT_02730 [Coprococcus eutactus ATCC 27759]
 gi|158448240|gb|EDP25235.1| hypothetical protein COPEUT_02730 [Coprococcus eutactus ATCC 27759]
          Length = 441

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQ-----RNTPMFDKSSSIPLPETIVVLQKIG 256
           +++ + A +I    ++  T T   I++ D        +  F   S+  +      L+ + 
Sbjct: 277 SVTPVTASDIGNHFVYADTTTNESINLKDDVLCFNDVSLSFQPDSAELITSENEALKVLS 336

Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNW--------RLSLDRAYSAYQVLMKSGVSEDR 308
            V++++T        +        A   W         LS  RA +   +L+K+GV E+ 
Sbjct: 337 PVISYAT--------SQDVTIAVFASTAWSDDKEALYDLSSARANTVKTLLIKAGVQEES 388

Query: 309 I 309
           I
Sbjct: 389 I 389


>gi|168333865|ref|ZP_02692108.1| hypothetical protein Epulo_03110 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 229

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 20/119 (16%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           +  +I+  L     D + + +  E T  G  I   D     +F+   +        +L K
Sbjct: 64  VKSEINDDLMRAFGDQL-EMLNMEITS-GSTIX-FDSPE-VLFETGQAALNDTFKSILDK 119

Query: 255 IGEVL--------AHSTEVISIRGHTD-----ASPFRNIARDNWRLSLDRAYSAYQVLM 300
              +             + I I GHT               +N  LS DR     +VL 
Sbjct: 120 FFPIYLDLIYNNYKEVIKEIRIEGHTSTEWGNQIDVNKAYFNNMELSQDR---TREVLE 175


>gi|90424373|ref|YP_532743.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gi|90106387|gb|ABD88424.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 218

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           ++ +    L+ +  V GV     +      I++     +F ++ +     +   L  +G+
Sbjct: 80  QLDAYEQQLLNELQVAGVKMNVQQDA---RILEMEEPILFSRADARLSSTSANRLIAVGK 136

Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK--SGVSEDRISKISG 314
           +     +  + I GH+      +   D   ++L RA      L +   G    R+ +  G
Sbjct: 137 IFQKFNQRQVDIIGHS-----ASDEAD--EVALARAKVVTSRLKEMTGGRLPLRM-RSKG 188

Query: 315 FAHHRLKIASDPMNSANRRIDILV 338
            +       ++     NRR+ I V
Sbjct: 189 SSEPVGDNRTETGRDRNRRVTIFV 212


>gi|296102166|ref|YP_003612312.1| OmpA/MotB domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056625|gb|ADF61363.1| OmpA/MotB domain-containing protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 475

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286
           II   +  +FD       P T  +L   +  + A    +I I GHTD++      + N  
Sbjct: 398 IIRLDSMSLFDTGKWALKPGTTKLLVNSLVGIKAKPGWLIVIAGHTDST---GDDQSNQV 454

Query: 287 LSLDR 291
           LSL R
Sbjct: 455 LSLRR 459


>gi|255690702|ref|ZP_05414377.1| putative outer membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260623733|gb|EEX46604.1| putative outer membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 494

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++     + ++ L ++  V       + I G  D+S    +  D+  LS+ RA  
Sbjct: 388 FFTLNTAHLTDTSQMLNLDELARVAKKHNLSVKITGAADSSTGTAVINDS--LSVSRAEF 445

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIAS 324
               L + G+   R+ K    G   +    A+
Sbjct: 446 IATELERRGIPSGRLLKAGRGGIDDYLPTEAN 477


>gi|222823242|ref|YP_002574815.1| peptidoglycan-associated lipoprotein precursor [Campylobacter lari
           RM2100]
 gi|222538463|gb|ACM63564.1| peptidoglycan-associated lipoprotein precursor [Campylobacter lari
           RM2100]
          Length = 161

 Score = 43.3 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           FD        +   V+    E+     +   I + G+ D          N  L L RA +
Sbjct: 58  FDFDKFNVRSDMQKVIANNAEIFNKEAANAAIVVEGNCDEW---GTDEYNQALGLKRAKA 114

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335
             + L+  GVS DRI  +  +              ++ NRR +
Sbjct: 115 VKESLVAQGVSADRI-SVKSYGETNPVCTERTKACDAQNRRAE 156


>gi|299138485|ref|ZP_07031664.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599731|gb|EFI55890.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 256

 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +D  S    P+    +      L       + I G+ D    R  A  N  L  +RA +
Sbjct: 153 FYDYDSFDLRPDAQSSVMHAASYLNAHPAIKVLIGGYCDD---RGSAEYNITLGENRANA 209

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A   L+ +GVS +R+ ++  +   +     +  +    NRR
Sbjct: 210 AKTALVSAGVSANRL-RVVSYGKEKQFCTEENESCWQQNRR 249


>gi|294341389|emb|CAZ89806.1| putative bacterial outer membrane protein OmpA/MotB [Thiomonas sp.
           3As]
          Length = 172

 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288
           D      F  +S+    +   V++   + L       + ++G+ D    R     N  L 
Sbjct: 66  DVPKQVYFAFNSAALKAQYKPVVEVNAQFLQSHPAAHLQLQGNCDP---RGSQEYNLALG 122

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
             RA +  + +   G S +++  IS  +       +D   + +RR+D+
Sbjct: 123 QSRANAVMKAMTLLGASPNQMEAISYGSEKASPARAD--YAHDRRVDL 168


>gi|170739034|ref|YP_001767689.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193308|gb|ACA15255.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46]
          Length = 624

 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV----LAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S    P+    L  I E     + H+ + +  I GHTDA        DN  LS  R
Sbjct: 509 FETGSWQVAPDQARRLAAIAEAIRRAVEHNPQEVFLIEGHTDAV---GSEVDNLSLSDRR 565

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           A     VL +            G+    LK+ +   N  NRR+ 
Sbjct: 566 AQEVAAVLTRDFRVPPENLTTQGYGEQYLKVNTQEANRENRRVT 609


>gi|114327747|ref|YP_744904.1| hypothetical protein GbCGDNIH1_1083 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315921|gb|ABI61981.1| hypothetical secreted protein [Granulibacter bethesdensis CGDNIH1]
          Length = 275

 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
             TT  G+ +         MF    S   P T   L++    ++  +   ++I  +   +
Sbjct: 143 LSTTGEGLRV---------MFGPGRSDISPATNDALREAAREVSKLSNESVTILAYAPGT 193

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
              +      RLSL RA +    L+ +G+   +I  +     +  K  +D
Sbjct: 194 --ADDPSTARRLSLSRALTIRSALIAAGMPSTKIF-VRALGSNIGKGPAD 240


>gi|50084798|ref|YP_046308.1| putative antigen [Acinetobacter sp. ADP1]
 gi|49530774|emb|CAG68486.1| putative antigen [Acinetobacter sp. ADP1]
          Length = 281

 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 219 TTRTGILISIIDQRNTPMFD---KSSSIPLPETIVVLQKIG-EVLAH--STEVISIRGHT 272
             +    + II+     +F       +  LP     L+++  ++  H  +   I + GHT
Sbjct: 145 IVKQKEQVDIINLSADALFKFNGSGLNDLLPRGHEELERLSNDIRNHYIAVSRIHLVGHT 204

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           D     + +  N+ L L RA +    L+K G+    IS
Sbjct: 205 D--RIGSDSY-NYNLGLKRAQTVKNYLVKDGIPAKTIS 239


>gi|4378863|gb|AAD19731.1| unknown [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 201

 Score = 43.3 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            D     +F    +I   +    L +  +  A ++    I  H           D W L+
Sbjct: 92  QDFLADDLFSPQDAILTDKGKAALAQFAKKAARASAYFMIESH--GIGNGTARFDKWELA 149

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
             R  S  + L  SGV E+ +      A       +
Sbjct: 150 AARTASVARQLKSSGVDENHLK--IMMAPDNPLADN 183


>gi|312961582|ref|ZP_07776082.1| major outer membrane protein OmpAII [Pseudomonas fluorescens WH6]
 gi|311284165|gb|EFQ62746.1| major outer membrane protein OmpAII [Pseudomonas fluorescens WH6]
          Length = 309

 Score = 43.3 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 233 NTPMFDKSSS---IPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWR 286
              +F    S          + + ++   L       + + + GHTD  P  + A  N  
Sbjct: 189 GDVLFAFGKSGYQDISSRGRIAILELITQLNREHAKLDRVEVVGHTD--PIGSYAA-NQA 245

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISK 311
           L L RA +  ++L+  G+  + ++ 
Sbjct: 246 LGLKRAQTVRRLLIDGGLPANAVTA 270


>gi|251771203|gb|EES51784.1| hypothetical protein UBAL3_95450004 [Leptospirillum
           ferrodiazotrophum]
          Length = 236

 Score = 43.3 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 28/141 (19%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEV-----ISIRGHTDAS- 275
           +SI  +    +F   S    P    +L         +L           I I GHT +  
Sbjct: 84  LSIRFREPDVLFTTGSDALNPRFKAILDNFFPRYIAILDSKKYRHSITEIRIEGHTSSFW 143

Query: 276 -----PFRNIAR-DNWRLSLDRAYSAYQVLMK----SGVSE--DRISKISGFAHHRLKIA 323
                P  + A  +N  LS  R  S    +M+    SG      R+   +G +  RL   
Sbjct: 144 NKGTPPNSDAAYFNNMALSQARTRSTLLYVMELPAVSGERPWLKRVLTANGLSSSRLIYR 203

Query: 324 S----DPMNSANRRIDILVED 340
           S    DP+ S   R++  V+ 
Sbjct: 204 SDGREDPVRSQ--RVEFRVKT 222


>gi|197124507|ref|YP_002136458.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
 gi|196174356|gb|ACG75329.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K]
          Length = 357

 Score = 43.3 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + +    DA+P     +   RLS   A +A   L + GV+E R+S + G+   R  + + 
Sbjct: 283 VRVEAFVDATPDAQADQ---RLSQAMADAAIGRLRELGVAERRLSGV-GYGGERPLLPNF 338

Query: 326 P--MNSANRRIDIL 337
                +ANRR++I+
Sbjct: 339 TVRGRTANRRLEIV 352


>gi|254294179|ref|YP_003060202.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
 gi|254042710|gb|ACT59505.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814]
          Length = 386

 Score = 43.3 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNW 285
           Q     F+  SS+       V+                 + +I G+TD          N 
Sbjct: 275 QDFAVYFEWDSSVLTVPAQEVVN--SATRRALENGCTISIATIDGYTDT---SGNKAYNA 329

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341
           RLS  RA      L+  GV    ++  +       K  +D +    NRR  I++  R
Sbjct: 330 RLSARRAAVVRDALIARGVDASVVTTDAKGEEGLAKATADGVREPLNRRAQIILSVR 386


>gi|218662996|ref|ZP_03518926.1| OmpA family peptidoglycan-associated lipoprotein precursor
           [Rhizobium etli IE4771]
          Length = 169

 Score = 43.3 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I++ GH D    R     N  L   R
Sbjct: 60  DRIFFDTDSSSIRADASQTLDRQAQWLGRYPNYQITVEGHADE---RGTREYNLALGARR 116

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 117 AAAAKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 159


>gi|154252547|ref|YP_001413371.1| hypothetical protein Plav_2100 [Parvibaculum lavamentivorans DS-1]
 gi|154156497|gb|ABS63714.1| hypothetical protein Plav_2100 [Parvibaculum lavamentivorans DS-1]
          Length = 159

 Score = 43.3 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
             MF+   S         L    +     +  + ++ +  A P  + +    RLSL RA 
Sbjct: 62  RIMFEPDESALSQGARDKLVAFAKDFTSRSGRLELKAY--AGPPHDKSSAARRLSLRRAL 119

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           S  + LM SG+  +RI ++           SD  +    R+DI +
Sbjct: 120 SVRRELMASGIVVERI-QVRALGGT-----SDSGHP--DRVDIKL 156


>gi|118578704|ref|YP_899954.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118501414|gb|ABK97896.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379]
          Length = 201

 Score = 43.3 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           + + GHT           N +LS  RA +    L   GV+   I  I G           
Sbjct: 132 VDLTGHTCTI---GTDDYNKKLSFRRAEAVATALKARGVN---IGTIEGRGKCCPASQD- 184

Query: 326 PMNSANRRIDILVEDRQG 343
                NRR++I+   ++G
Sbjct: 185 --KRQNRRVEIIGIRKEG 200


>gi|83594714|ref|YP_428466.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
 gi|83577628|gb|ABC24179.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170]
          Length = 242

 Score = 43.3 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +    +   +L +   VL       + + GHTD     + A     LS  RA + 
Sbjct: 140 FASDQADLDDDAGPLLAEAARVLKQDPRLSLMVMGHTDDRHALDEAL---DLSARRAEAV 196

Query: 296 YQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDI 336
              L++  GV   R+  + +G+        +    + NRR+D+
Sbjct: 197 VAALVEDHGVERGRLVPRGAGWLAPVASNRTQAGRALNRRVDL 239


>gi|237751947|ref|ZP_04582427.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376514|gb|EEO26605.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 252

 Score = 43.3 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 40/167 (23%)

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248
           K  L + +K + S  + + ADN V+    E                 +FD          
Sbjct: 70  KDLLAEFSKNLESWNAEIDADNTVRFREPEI----------------LFDSGKKEVKTRF 113

Query: 249 IVVLQKI----GEVLAHSTEV-----ISIRGHTD-----ASPFRNIARDNWRLSLDRAYS 294
             +L        ++L           I I GHT      A    +    N  LS  RA  
Sbjct: 114 QEILDDFFPRYIKILTQEKYKNDIEEIRIEGHTSTEWQNAKTLESRYLGNAELSQARALE 173

Query: 295 AYQVLMKSGVSED------RISKISGFAHHRLKIASDPMNSANRRID 335
             +    + V +       ++ + +G +  +           +RR++
Sbjct: 174 VLKYCFSNPVIKADKQWLIKVLRANGLSFAKPL----ETAELSRRVE 216


>gi|183219562|ref|YP_001837558.1| putative MotB protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909704|ref|YP_001961259.1| endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774380|gb|ABZ92681.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777984|gb|ABZ96282.1| Putative MotB protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 242

 Score = 43.3 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 18  KKKVAIDDTPNNLGS---WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74
           K+   +     ++ S   W + YAD +T+L+  F++++ ++  D      + +     G 
Sbjct: 3   KRSRFVSREEEHVESHDRWLLTYADMITLLLGLFIILYAVSKVDSKRLNEVAKDIKR-GF 61

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLS 101
            L  +S G+  +           I  S
Sbjct: 62  GLNVSSIGVILDGGSGILEDDTMIPKS 88



 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLM-KS 302
           P+     +++  +       I +R H    +   ++  +++W    +RA    + L+   
Sbjct: 139 PDLKFAFEQLAILSKGMEIDIVVRVHIPYESQIDKSKFQNSWDYHSNRASILAEKLVNDY 198

Query: 303 GVSEDRISKISGFAH-HRLKIASDPMNSAN-RRIDILVEDRQ 342
           G+ ++++  + G+A   + K +  P   AN  RI+IL+  ++
Sbjct: 199 GIPKEQV-SVQGYAMFQKSKTSDTPEKKANEERIEILIRKKE 239


>gi|172061805|ref|YP_001809457.1| cytochrome c oxidase subunit II [Burkholderia ambifaria MC40-6]
 gi|171994322|gb|ACB65241.1| cytochrome c oxidase, subunit II [Burkholderia ambifaria MC40-6]
          Length = 535

 Score = 43.3 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA   
Sbjct: 439 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQVV 495

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 496 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 531


>gi|118475629|ref|YP_892653.1| Omp18 [Campylobacter fetus subsp. fetus 82-40]
 gi|118414855|gb|ABK83275.1| Omp18 [Campylobacter fetus subsp. fetus 82-40]
          Length = 173

 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARD 283
            I  Q     FD       P+   V+     +   +   +  I + G+ D          
Sbjct: 59  QIQSQVKNVYFDFDKFNIRPDMQGVVGTNASLFNQNGADSLRIMVEGNCDEW---GSDEY 115

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340
           N+ L + RA +A   L+  GVS DRI  I+     +          ++ NRR +  +  
Sbjct: 116 NYALGVKRAKTAKDALVAQGVSADRIE-ITSNGESKPVCTERTKACDAQNRRDEFKILP 173


>gi|115352953|ref|YP_774792.1| cytochrome c oxidase subunit II [Burkholderia ambifaria AMMD]
 gi|115282941|gb|ABI88458.1| cytochrome c oxidase, subunit II [Burkholderia ambifaria AMMD]
          Length = 535

 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S+   +    +    +      +  +++ G TD +     A  N  L+  RA   
Sbjct: 439 FETGKSVLPADAKAAIAAAADYAKAHPDAKLALSGFTDKT---GSADANAELAKHRAQVV 495

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+ED I       I+G A  +            RR++I
Sbjct: 496 RDALKAAGVAEDHIILKKPETITGGADAKEA----------RRVEI 531


>gi|281420786|ref|ZP_06251785.1| putative immunoreactive antigen PG32 [Prevotella copri DSM 18205]
 gi|281405078|gb|EFB35758.1| putative immunoreactive antigen PG32 [Prevotella copri DSM 18205]
          Length = 381

 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 18/168 (10%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
             +  +    +N + N     L+ +      + K+++DL   ++                
Sbjct: 214 TPRDQNEIDGLNGQINNLRNDLNSKDSELAAKDKQIKDLQNALNECQKAPKYVKPATATN 273

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275
            + T               +F    S      +  ++ I + + +  +  + I+G+  AS
Sbjct: 274 LQPT--------------VLFTVGKSKVERSQMPNIEMIAQYMKNHPDAKVEIKGY--AS 317

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           P  +    N +LS  RA +   +L+K+        +  G         
Sbjct: 318 PEGSKEL-NQKLSEARANAVKNILVKTYKISANRLQAKGMGATDKLFK 364


>gi|294506100|ref|YP_003570158.1| Conserved hypothetical protein containing PKD repeat [Salinibacter
           ruber M8]
 gi|294342428|emb|CBH23206.1| Conserved hypothetical protein containing PKD repeat [Salinibacter
           ruber M8]
          Length = 575

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           + + NT  F + +S         LQ+  EVL       + + G   A+P          L
Sbjct: 465 VQELNTVYFARRASSLDSAARQKLQENAEVLRTCPNLSVRVEGF--AAP---DEPTPLLL 519

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           S DRA +  +    +G++  RI+  SG             +  NRR
Sbjct: 520 SRDRARAVAEFYEDNGIAPGRIT-TSGEGAVGDPGGKKGADEQNRR 564


>gi|160883800|ref|ZP_02064803.1| hypothetical protein BACOVA_01772 [Bacteroides ovatus ATCC 8483]
 gi|156110885|gb|EDO12630.1| hypothetical protein BACOVA_01772 [Bacteroides ovatus ATCC 8483]
          Length = 379

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + R+  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 237 DMRDRVNALKGENESLKRDLVEARNKKPEVIVKKEAGFVPRLV-----VVFNIGKSNISK 291

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
              + ++ + + +  + +V +I G+ D       A  N +LS  RA +   +++   GV 
Sbjct: 292 REYMNIEAMAKGIKATDKVFTITGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGVP 349

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             ++ K+            D   S   R+ I+
Sbjct: 350 ASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 377


>gi|156932816|ref|YP_001436732.1| hypothetical protein ESA_00612 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156531070|gb|ABU75896.1| hypothetical protein ESA_00612 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 246

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          IKK+   +        W I YAD MT +M  FLV+ + + +    +    +
Sbjct: 8  IKKRRGDEAEK---PFW-ISYADLMTAMMVLFLVVMVASLSSVTQRIQKAE 54


>gi|124516387|gb|EAY57895.1| putative outer membrane protein, OmpA/MotB family [Leptospirillum
           rubarum]
          Length = 179

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 241 SSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+   E   +L+K   +L  +    + I GH D    R     N  L   RA +A   L
Sbjct: 76  KSVLTSEDRRILKKDAAILNANPTVHVVIAGHADE---RGTDTYNIVLGQKRAKAAMMYL 132

Query: 300 MKSGVSEDRISKIS 313
           +  G+ ++RI  +S
Sbjct: 133 VNLGIKKNRIKIVS 146


>gi|325277486|ref|ZP_08143089.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324097373|gb|EGB95616.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 435

 Score = 43.3 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 15/109 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291
           F   S+    + +  ++++ + L  +        + G  D   +P R        LS  R
Sbjct: 334 FQAGSANLDNKALRDVRRVADYLHQAGKLQGKTVLVGFGDPKLTPGRAAL-----LSRLR 388

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
           A +  + L ++GV+   + +++G         ++       N+R+++ V
Sbjct: 389 AQAVRRQLARNGVA---VLQVTGMGAELPVAGNEREQGRLHNQRVEVWV 434


>gi|251771622|gb|EES52198.1| OmpA family protein [Leptospirillum ferrodiazotrophum]
          Length = 223

 Score = 43.3 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287
            + + T  F  +S+       +VL K+ E +  +    I + G TD  P  +    N +L
Sbjct: 109 QEIQKTVYFSYNSARLSYWDKLVLNKVAEEIQKAPYRLIVLHGSTD--PLVSETY-NKKL 165

Query: 288 SLDRAYSAYQVLMKSGVSEDRISK 311
            L RA S    L+   +   +I  
Sbjct: 166 GLWRALSVKHYLISRKIPAKKIRA 189


>gi|126662222|ref|ZP_01733221.1| outer membrane protein, OmpA/MotB family [Flavobacteria bacterium
           BAL38]
 gi|126625601|gb|EAZ96290.1| outer membrane protein, OmpA/MotB family [Flavobacteria bacterium
           BAL38]
          Length = 444

 Score = 43.3 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            FD +   P   +   L  I   L    E  +  RG  D +      + N  L+  RA +
Sbjct: 342 FFDTNKDTPNTASTNNLYYIINFLKKHPEAKVRARGFADTT---GDEKKNEELAQKRAMN 398

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           + + ++KSG+S DRI  +       +  +S       RR+ 
Sbjct: 399 SKEFIVKSGISADRIEILGSGEDASMDTSSKTGRQLARRVS 439


>gi|292491142|ref|YP_003526581.1| hypothetical protein Nhal_1021 [Nitrosococcus halophilus Nc4]
 gi|291579737|gb|ADE14194.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 237

 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE----VLAHST---EVISIRGHTDA-----SPFRNIARD 283
           +F   S+        +L         +L H     + I I GHT +              
Sbjct: 99  LFATGSTEIRQRFKEILADFFPRYLVILKHYKDSIDEIRIEGHTSSVWNNQVSETEAYFL 158

Query: 284 NWRLSLDRAYSAYQVL-MKSGVSEDRI-----SKISGFAHHRLKIAS--DPMNSANRRID 335
           N  LS  R  S    +     V  DR          GF+  RL +    +   + +RR+ 
Sbjct: 159 NMLLSQGRTRSVLHYVYELPKVESDRGWVKRHFAAVGFSSSRLVLDDQGNEDRARSRRVS 218


>gi|239816681|ref|YP_002945591.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
 gi|239803258|gb|ACS20325.1| OmpA/MotB domain protein [Variovorax paradoxus S110]
          Length = 183

 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           +      G  I + D      F   S+   P     L  + + +  S     + G  D +
Sbjct: 68  VTVVIPDGASIRVADGVVNFYFATGSADLAPGAAEALAAVIKGV-ESGRKAVVSGFHDTT 126

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
                A  N +L+  RA +   VL+  GV   ++             A    ++  RR++
Sbjct: 127 ---GDAAINEQLAKKRAETVRDVLVGLGVPAGKVDL-----QRPAITAGSGNDAQARRVE 178

Query: 336 ILVED 340
           + + D
Sbjct: 179 VKLVD 183


>gi|260170794|ref|ZP_05757206.1| outer membrane porin F precursor [Bacteroides sp. D2]
 gi|293372828|ref|ZP_06619206.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|299149162|ref|ZP_07042223.1| outer membrane porin F [Bacteroides sp. 3_1_23]
 gi|315919128|ref|ZP_07915368.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292632203|gb|EFF50803.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|298512829|gb|EFI36717.1| outer membrane porin F [Bacteroides sp. 3_1_23]
 gi|313693003|gb|EFS29838.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 379

 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + R+  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 237 DMRDRVNALKGENESLKRDLVEARNKKPEVIVKKEAGFVPRLV-----VVFNIGKSNISK 291

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305
              + ++ + + +  + +V +I G+ D       A  N +LS  RA +   +++   GV 
Sbjct: 292 REYMNIEAMAKGIKATDKVFTITGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGVP 349

Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
             ++ K+            D   S   R+ I+
Sbjct: 350 ASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 377


>gi|209550775|ref|YP_002282692.1| peptidoglycan-associated lipoprotein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536531|gb|ACI56466.1| peptidoglycan-associated lipoprotein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 177

 Score = 43.3 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + LA      I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSSSIRADASQTLDRQAQWLARYPNYQITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 125 AAAAKDYLASRGVPAQRLKTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|86359052|ref|YP_470944.1| outer membrane lipoprotein [Rhizobium etli CFN 42]
 gi|86283154|gb|ABC92217.1| outer membrane lipoprotein [Rhizobium etli CFN 42]
          Length = 178

 Score = 43.3 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + L       I++ GH D    R     N  L   R
Sbjct: 69  DRIFFDTDSTSIRADAAQTLDRQAQWLGRYPNYQITVEGHADE---RGTREYNLALGARR 125

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 126 AAATKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 168


>gi|330946477|gb|EGH47518.1| OmpA family protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 63

 Score = 43.3 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
           LS  RA +  + L+KSGV+      I G         +  D     NRR+++ V+
Sbjct: 12  LSRLRAMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 63


>gi|153833397|ref|ZP_01986064.1| putative chemotaxis protein MotB [Vibrio harveyi HY01]
 gi|148870285|gb|EDL69215.1| putative chemotaxis protein MotB [Vibrio harveyi HY01]
          Length = 219

 Score = 43.3 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           + G+       G+  +       ISI D     +FD       P     L K   + +  
Sbjct: 59  IKGINDALNAAGIEVKADPDTGDISITDS---ILFDLDDYRLKPSGKEFLNKFIPIYSDV 115

Query: 263 T----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
                        I I GH+ +         N  LS+ RA S 
Sbjct: 116 VFQSKATADEVSRIVIEGHSSSE---GSFNRNMELSVLRANSV 155


>gi|90408529|ref|ZP_01216686.1| peptidoglycan-associated lipoprotein [Psychromonas sp. CNPT3]
 gi|90310348|gb|EAS38476.1| peptidoglycan-associated lipoprotein [Psychromonas sp. CNPT3]
          Length = 176

 Score = 43.3 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  +S+       +L    + L      + +I G+TD    R     N  L   RA S 
Sbjct: 76  FDYDTSVLKARYTKILDAHAKFLVDHPTKLLTIEGNTDE---RGTPEYNIALGERRAMSV 132

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322
              L   GV+  +IS +S +   +   
Sbjct: 133 STYLENMGVTSKQISIVS-YGEEKPVN 158


>gi|218462392|ref|ZP_03502483.1| OmpA family peptidoglycan-associated lipoprotein precursor
           [Rhizobium etli Kim 5]
          Length = 177

 Score = 42.9 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSSSIRADASQTLDRQAQWLGRYPNYQITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 125 AAAAKDYLASRGVPAQRMKTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|197103770|ref|YP_002129147.1| outer membrane protein [Phenylobacterium zucineum HLK1]
 gi|196477190|gb|ACG76718.1| outer membrane protein [Phenylobacterium zucineum HLK1]
          Length = 149

 Score = 42.9 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           DQ     F+   +   PE   V+ +   +    +   +S+ G  DA         N  LS
Sbjct: 39  DQTVQIYFEPGQAEVTPEGRRVIAEAAAQARGCAVRRVSVLGLADA---AGDPSANLELS 95

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
             RA S    L ++ +      +++          +       RR D+ +
Sbjct: 96  KKRAQSVTAALAQARLPAAEF-QVAAAGQQGATTPAGQAAPLRRRADVTL 144


>gi|42781280|ref|NP_978527.1| hypothetical protein BCE_2215 [Bacillus cereus ATCC 10987]
 gi|42737202|gb|AAS41135.1| hypothetical protein BCE_2215 [Bacillus cereus ATCC 10987]
          Length = 332

 Score = 42.9 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 2/186 (1%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A   I +  +    ++  
Sbjct: 66  FATLSFILFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFGALSSISNPTSEKTAATSK 125

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  +  E                +K  ++ +        +++ E  K      + K +D
Sbjct: 126 KVTSNNAEEKESEKKKELEKKEADEKTQKQEDEKRQAEEQTRKQEDEKRQAEEQARKQED 185

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
             +  D +    +EE   L      K    + +KR  D   +         AD   +   
Sbjct: 186 EKRLADEQARKQQEEQKRLADEQARK--QQEEQKRQADEQARKQQEEQKRQADEQARKQQ 243

Query: 217 FETTRT 222
            E  R 
Sbjct: 244 EEQKRQ 249


>gi|42527170|ref|NP_972268.1| OmpA family protein [Treponema denticola ATCC 35405]
 gi|41817594|gb|AAS12179.1| OmpA family protein [Treponema denticola ATCC 35405]
          Length = 167

 Score = 42.9 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+     +        + V  ET +     ++ D   T  F   S      T  +L++IG
Sbjct: 24  KQKEEKPAEPEKTQEQEVVKEETDKKANEKNMSDDYYTVYFAPQSYQIDQFTAQILKEIG 83

Query: 257 EVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E L A + + I I GH+      +  +D  R++L RA +      K  + +     + G 
Sbjct: 84  EDLKAKNVKKIVIYGHSAKL---DSQKDEDRIALQRAIAVASYFQKMKLFDANNIIVEGK 140

Query: 316 AHHRLKIASD--PMNSANRRIDI 336
                  +         NRR++I
Sbjct: 141 GASEPARSHSEITDRFKNRRVEI 163


>gi|300871695|ref|YP_003786568.1| hypothetical protein BP951000_2090 [Brachyspira pilosicoli 95/1000]
 gi|300689396|gb|ADK32067.1| hypothetical protein BP951000_2090 [Brachyspira pilosicoli 95/1000]
          Length = 190

 Score = 42.9 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 214 GVLFETTRTGILISIIDQRNTPMFDKS--SSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270
            +    T  G    +++      +      +  + +   V+ ++   ++++   I  + G
Sbjct: 42  NMSIIQTERGY---LLNTDKEIYYKVGAKKAYNIEDYTYVMNEMISFMSNNRNAILIVEG 98

Query: 271 HTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           H D         D N  LSL RA     V++  G+S  R+ KI  +++   K  ++    
Sbjct: 99  HADE--ISKEKLDLNMMLSLQRASVIRDVIVSFGISHQRV-KIYPYSYFAPKYTTNTF-- 153

Query: 330 ANRRIDIL 337
            NRR+D +
Sbjct: 154 QNRRVDFV 161


>gi|206603227|gb|EDZ39707.1| Putative outer membrane protein, OmpA/MotB family [Leptospirillum
           sp. Group II '5-way CG']
          Length = 179

 Score = 42.9 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 241 SSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
            S+   E   +L+K   +L  +    + I GH D    R     N  L   RA +A   L
Sbjct: 76  KSVLTSEDRRILKKDAAILNANPTVHVVIAGHADE---RGTDTYNIVLGQKRAKAAMMYL 132

Query: 300 MKSGVSEDRISKIS 313
           +  G+ ++RI  +S
Sbjct: 133 VNLGIKKNRIKIVS 146


>gi|281192981|gb|ADA57643.1| outer membrane protein A precursor [Aeromonas hydrophila]
          Length = 343

 Score = 42.9 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292
           +         PE +  L  + + +           + G+T  +   + A  N +LS  RA
Sbjct: 223 LLAFGKDSLKPEGVAALNALYQQIVEFQPKDGNAVVVGYT--NRIGSDAY-NQKLSEARA 279

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            +    L+  G++  ++  I G         +
Sbjct: 280 RTVANFLVSKGMAASKV-AIEGRGEANPVTGT 310


>gi|99082759|ref|YP_614913.1| OmpA/MotB [Ruegeria sp. TM1040]
 gi|99039039|gb|ABF65651.1| OmpA/MotB [Ruegeria sp. TM1040]
          Length = 517

 Score = 42.9 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS P  ++   +  +   L         +   G +D       A  N  +++ RA 
Sbjct: 410 FEAGSSRPDAQSRNNIDLLARELEAGVYDGKRLVFVGFSDGE---GPAEGNRAIAMKRAE 466

Query: 294 SAYQVLMKSGVSE--DRIS-KISGFAHHRLKIASDP--MNSANRRIDILV 338
           S  + + ++  +   DRIS + + +         D      ANRR+++ +
Sbjct: 467 SVRRAVERAAETANLDRISIETAAYGEALPIACDDSAWGRQANRRVEVWI 516


>gi|332300803|ref|YP_004442724.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177866|gb|AEE13556.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 387

 Score = 42.9 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
            N   F   S+      ++ +    E    +   I I G+ D          N  LS  R
Sbjct: 285 ENVVAFRIGSAKIDKNQMINVYNSAEAAKANGGKIYIVGYADEQ--TGTPEINMSLSERR 342

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           A +    L+ + GV+ D I  I          A++  N    R+ I+
Sbjct: 343 AEAVKNALINNYGVNPDNIV-IDFKGDTVQPFATNEWN----RVAII 384


>gi|259417565|ref|ZP_05741484.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
 gi|259346471|gb|EEW58285.1| OmpA/MotB [Silicibacter sp. TrichCH4B]
          Length = 517

 Score = 42.9 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS P  ++   +  I   L         +   G +D       A  N  ++L RA 
Sbjct: 410 FEAGSSRPDAQSRNNIDLIARELEAGVYDGKRMVFVGFSDGE---GPAEGNRAIALKRAE 466

Query: 294 SAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDP--MNSANRRIDILV 338
           S  + + ++      + +I+     +         D      ANRR+++ V
Sbjct: 467 SVRRAVERA-AETANLDRITIETAAYGEALPIACDDSAWGRQANRRVEVWV 516


>gi|257486672|ref|ZP_05640713.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 160

 Score = 42.9 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335
                 N ++S +RA S   +   SG+  +R+S+  G      + A+D     + NRR++
Sbjct: 3   SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVE 61

Query: 336 ILVEDR 341
           IL+  +
Sbjct: 62  ILMTPQ 67


>gi|90579803|ref|ZP_01235611.1| hypothetical protein VAS14_16496 [Vibrio angustum S14]
 gi|90438688|gb|EAS63871.1| hypothetical protein VAS14_16496 [Vibrio angustum S14]
          Length = 342

 Score = 42.9 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +    +         L ++   +  +      I G  D       A+ N ++S +RA + 
Sbjct: 241 YQNGQTKLNDYGRYNLGEVIATMQANPEVNAQIIGRADKV---GSAKVNEKVSAERAANV 297

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDILVE 339
            + L  +G+   R++ +S   ++     +D     N   R + I+++
Sbjct: 298 AKYLEANGIDASRLT-VSSVGYNNPL-KTDAATKTNYVQRSVQIILK 342


>gi|323447094|gb|EGB03049.1| hypothetical protein AURANDRAFT_68341 [Aureococcus anophagefferens]
          Length = 652

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 28/128 (21%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHT--------DASPF--------- 277
           F  +++   PE++ ++ ++  VL     V  + ++GHT        D +           
Sbjct: 528 FAGNATEIKPESLELIDQLAAVLTSHENVDGLVLQGHTNSKCGLDCDGTTVCANDTCQRT 587

Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANR 332
              +     + LS  RA +    L+  GV   RI    G A  R +   D  ++    NR
Sbjct: 588 FGASGGAVAFSLS--RAAAVKAALVARGVDAGRID-CEGMAGSR-RCVDDTESADNYLNR 643

Query: 333 RIDILVED 340
           R++I ++D
Sbjct: 644 RVEIHLDD 651


>gi|209525997|ref|ZP_03274530.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209493523|gb|EDZ93845.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 266

 Score = 42.9 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 38/212 (17%)

Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220
           +D   S +++    +  L         +   LQ    ++ + L       +      E  
Sbjct: 48  SDATASRSEQLEVQMSELQSRLQQQTTQVTGLQGEVARLQTELRNRGDRIMQLQGEVERL 107

Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIV-----VLQKIGEVLAHSTE-VISIRGHTDA 274
           ++  +I + D  +   FD  S+    E        ++ +I +        V+ + GHTD 
Sbjct: 108 KSPPVIVLRDSSSRT-FDSGSAAISLELGEFIDNKLVAQIKDFAEDYEGYVVEVIGHTDG 166

Query: 275 SPFRNIARDNW-----------------------RLSLDRAYSAYQVLMKSGVSEDRISK 311
                    N                         L L RA S  Q L  +   +     
Sbjct: 167 Q-VTGGGYSNLDQVLEEVARNNQAVTSLVPGSNADLGLMRALSVVQRLQGNEELQSLGLT 225

Query: 312 ISGFAHHRLKIASDPMNSAN-------RRIDI 336
              ++  +L  AS    S N       RRI+I
Sbjct: 226 FKAYSAAQLYEASGNYASINRTSDPSRRRIEI 257


>gi|220919231|ref|YP_002494535.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957085|gb|ACL67469.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 357

 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-S 324
           + +    DA+P     +   RLS   A +A   L + GV+E R+S +       L    +
Sbjct: 283 VRVEAFVDATPDAQADQ---RLSQAMADAAVGRLRELGVAERRLSGVGCGGERPLLPNFT 339

Query: 325 DPMNSANRRIDIL 337
               +ANRR++I+
Sbjct: 340 VRGRTANRRLEIV 352


>gi|187931912|ref|YP_001891897.1| outer membrane protein FopA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712821|gb|ACD31118.1| outer membrane protein FopA [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 392

 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYNDTLSGIHKSDPRNQRVE 381


>gi|298369755|ref|ZP_06981072.1| cytochrome c oxidase, subunit II [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282312|gb|EFI23800.1| cytochrome c oxidase, subunit II [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 183

 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F    +        V+  + E      + + I G  D++     A  N  LS  RA + 
Sbjct: 87  FFATGKNDVAEGAEQVVADLIEA-GKEGKKLVISGFADST---GNAASNQELSKKRAQAV 142

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339
                  GV    I         + K  +  +  ++  RR+++ VE
Sbjct: 143 QAFFEAHGVKAGNIEL------RKPKSTTGAEGNDAEGRRVEVKVE 182


>gi|253567814|ref|ZP_04845225.1| outer membrane porin F [Bacteroides sp. 1_1_6]
 gi|298384713|ref|ZP_06994273.1| outer membrane porin F [Bacteroides sp. 1_1_14]
 gi|251841887|gb|EES69967.1| outer membrane porin F [Bacteroides sp. 1_1_6]
 gi|298262992|gb|EFI05856.1| outer membrane porin F [Bacteroides sp. 1_1_14]
          Length = 381

 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + RL  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 238 DMRNRLNSLKGENESLKRDLVEARNKKPEVIVKKEGGFVPRLV-----VVFNIGKSNISK 292

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
              + ++ + + +  + E   ++ G+ D       A  N +LS  RA +   +++   GV
Sbjct: 293 REYMNIEAMAKGIKANPEKTFTVTGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGV 350

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              ++ K+            D   S   R+ I+
Sbjct: 351 PASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 379


>gi|227536735|ref|ZP_03966784.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243427|gb|EEI93442.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 394

 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F   +S    ET V L    +V+      +   I G+ D          N RLS+ RA +
Sbjct: 294 FKIGTSEISNETRVNLGFFAKVIKEGDAQVIYRITGYADKG--TGTPEINQRLSIARAEA 351

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
              +L+    V   +++ ++      +   +DP  S 
Sbjct: 352 VKSILVNEFAVPARQLTTVAAGGVDNMYY-NDPKLSR 387


>gi|29345828|ref|NP_809331.1| outer membrane porin F [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337721|gb|AAO75525.1| outer membrane porin F precursor [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 372

 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + RL  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 229 DMRNRLNSLKGENESLKRDLVEARNKKPEVIVKKEGGFVPRLV-----VVFNIGKSNISK 283

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
              + ++ + + +  + E   ++ G+ D       A  N +LS  RA +   +++   GV
Sbjct: 284 REYMNIEAMAKGIKANPEKTFTVTGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGV 341

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              ++ K+            D   S   R+ I+
Sbjct: 342 PASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 370


>gi|237798774|ref|ZP_04587235.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021627|gb|EGI01684.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score = 42.9 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F              L  +   L        + + GH+D          N  LS  RA +
Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRVELDGHSDN---SGNRLTNRDLSRRRALA 234

Query: 295 AYQVL 299
               L
Sbjct: 235 VMDYL 239


>gi|157156048|ref|YP_001461438.1| hypothetical protein EcE24377A_0284 [Escherichia coli E24377A]
 gi|157078078|gb|ABV17786.1| hypothetical protein EcE24377A_0284 [Escherichia coli E24377A]
          Length = 246

 Score = 42.9 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          +KK+ + +        W I YAD MT +M  FLV+ + + +    +    +
Sbjct: 8  VKKRRSDEAEK---PFW-ISYADLMTAMMVLFLVVMVASLSSVTQRIQRAE 54


>gi|268679162|ref|YP_003303593.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617193|gb|ACZ11558.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 166

 Score = 42.6 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFR 278
             ++ S+     T  FD        +    +     +   +      I + G+ D     
Sbjct: 47  QKLIASLEANSKTIYFDFDKYNVRKDQQTNIDANAALFNSAEAKNFSIKVEGNCDEF--- 103

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
                N+ L L RA S    L+  G++ DR++ +S +      +     +  + NRR + 
Sbjct: 104 GTDEYNYALGLKRAKSVKDGLVAKGMNADRLTVVS-YGESNPAVNEHNKDAWAKNRRAEF 162

Query: 337 LVED 340
            V  
Sbjct: 163 KVLP 166


>gi|300727293|ref|ZP_07060707.1| putative outer membrane protein [Prevotella bryantii B14]
 gi|299775337|gb|EFI71933.1| putative outer membrane protein [Prevotella bryantii B14]
          Length = 501

 Score = 42.6 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F   +      + ++ ++ I  +       + I G  D++        N  LS  RA  
Sbjct: 403 FFKIGTDELTEPSQLLNIEGIAGIAVKYGLKMKISGAADSA--TGTEAINCELSTKRAEF 460

Query: 295 AYQVLMKSGVSEDR--ISKISGFAHHRLKIAS 324
             +++++ GV      I  I G        A+
Sbjct: 461 IKRLMIERGVDSRNITIHPIGGIDSFSPVTAN 492


>gi|91791256|ref|YP_552206.1| hypothetical protein Bpro_5454 [Polaromonas sp. JS666]
 gi|91701137|gb|ABE47308.1| hypothetical protein Bpro_5454 [Polaromonas sp. JS666]
          Length = 424

 Score = 42.6 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            +Q  + +F++ S+    E+   L+++   LA  +  I I    D  P            
Sbjct: 177 TEQTKSILFERGSAKLDKESEKRLKQLAATLAG-SLRIVISSADDTHPADVGG------- 228

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGF 315
            +RA      L+ +G +   IS   GF
Sbjct: 229 TERARVVRNALVAAGATPSAISVKVGF 255


>gi|325498706|gb|EGC96565.1| hypothetical protein ECD227_2803 [Escherichia fergusonii ECD227]
          Length = 246

 Score = 42.6 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          +KK+   +        W I YAD MT +M  FLV+ + + +    +    +
Sbjct: 8  VKKRRGDEAEK---PFW-ISYADLMTAMMVLFLVVMVASLSSVTQRIQRAE 54


>gi|213865487|ref|ZP_03387606.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 233

 Score = 42.6 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 162 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 218

Query: 289 LDRAYSAYQVLMKSG 303
             RA S    L+  G
Sbjct: 219 EKRAQSVVDYLISKG 233


>gi|126738442|ref|ZP_01754147.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
 gi|126720241|gb|EBA16947.1| OmpA domain protein [Roseobacter sp. SK209-2-6]
          Length = 518

 Score = 42.6 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+ P  ++   ++++   L         +   G +D       A  N +++L RA 
Sbjct: 411 FETGSARPDAQSRSNIEQLARALETGLYDGRKLVFAGFSDGD---GAAAANRKIALKRAT 467

Query: 294 SAYQVLMKSGVSED--RIS-KISGFAHHRLKIASDP--MNSANRRIDILV 338
           +    ++ +   E   R+  ++  F         +       NRR+++ V
Sbjct: 468 AVRDAVLAAAEPESAARVVIEVEAFGEALPMACDNSAWGRQVNRRVEVWV 517


>gi|95930151|ref|ZP_01312890.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
 gi|95133845|gb|EAT15505.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684]
          Length = 629

 Score = 42.6 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+      +  L ++ + +         + + G  D          N  LS  R  
Sbjct: 526 FKSGSTELDNRALRDLDRLVDFMHQGRNRYRPLMLFGFADNI---GENDVNQVLSEKRTR 582

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338
                L   G++      + G         +        NRR+++ +
Sbjct: 583 KVSTALQSRGLNAK---VVMGLGEAMPVADNATSAGREKNRRVEVWI 626


>gi|269123378|ref|YP_003305955.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
           12112]
 gi|268314704|gb|ACZ01078.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 601

 Score = 42.6 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 17/166 (10%)

Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203
           K S   +++    L      +  IN +E      + +E I+      +L DL  K++  +
Sbjct: 412 KVSGAFNTKGNLSLGAGLGYQFGINGKEKTNEIIVERENIINRDELDKLNDLNNKLNQRI 471

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAH 261
                D + + +          I I +     +  +             +L+ I   L  
Sbjct: 472 -----DELERRLKAFED-----IKINEDELYTLTGYKTGKFELTNSQEEILKDIVRELNE 521

Query: 262 --STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305
                 I I G+TD     +    N  L L RA    + L   G+ 
Sbjct: 522 NYRNRKIYITGYTDTM---SNEDLNLELGLKRANVVAKKLRALGLD 564


>gi|206891094|ref|YP_002249885.1| peptidoglycan-associated lipoprotein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743032|gb|ACI22089.1| peptidoglycan-associated lipoprotein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 182

 Score = 42.6 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           + ++     FD        + +  L+K+   L    +  + I GH D    R     N+ 
Sbjct: 68  LQEEIGDIHFDYDKYDVRQDDLPTLKKVASYLQKYPKLRVIIEGHCDE---RGTNEYNFA 124

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           L   RA SA Q L+  G+   RI  IS +   +        +    NRR
Sbjct: 125 LGQKRADSAKQYLITLGIISSRIDIIS-YGEEKPLCTEQNESCWQKNRR 172


>gi|163741431|ref|ZP_02148822.1| Outer membrane protein, OmpA/MotB family [Phaeobacter gallaeciensis
           2.10]
 gi|161385165|gb|EDQ09543.1| Outer membrane protein, OmpA/MotB family [Phaeobacter gallaeciensis
           2.10]
          Length = 624

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S++        L  +G  L         EV  I GHTDA      A  N  LS  R
Sbjct: 512 FETGSAVIRAAEAEELAALGNALRDMIAQNPQEVFLIEGHTDAV---GAAPFNLALSDRR 568

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
           A S    L +   V  + +  + G+    L + +
Sbjct: 569 AESVALALTEYFKVPPENMV-VQGYGETDLAVVT 601


>gi|332308253|ref|YP_004436104.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175582|gb|AEE24836.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 266

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   S +        L  I  ++    +  I++ G+ D    R  +  N  LS  RA S 
Sbjct: 151 FRTGSHLVEGHYHRQLDLIAALIRQYPDLHITLAGYADE---RGDSNYNQALSQQRAISV 207

Query: 296 YQVLMKSGVSEDRIS 310
            + L K  V   ++ 
Sbjct: 208 KRYLTKQQVPTAQLH 222


>gi|183221921|ref|YP_001839917.1| hypothetical protein LEPBI_I2560 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167780343|gb|ABZ98641.1| Hypothetical protein LEPBI_I2560 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 125

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKS 302
           P P+ +  LQ + + L  +        H DA        + N  +S  R+    + L+  
Sbjct: 31  PKPDLVR-LQTVADFLNRNRNY---EIHIDAHAVEGKNNEENIMISEKRSLEVERFLLIH 86

Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            V  ++I ++  + + +    +    + NRR++I +  
Sbjct: 87  FVEPNQIRRLF-YGNTKSPNQTKEHEALNRRVEIQLHP 123


>gi|86130146|ref|ZP_01048746.1| OmpA family protein [Dokdonia donghaensis MED134]
 gi|85818821|gb|EAQ39980.1| OmpA family protein [Dokdonia donghaensis MED134]
          Length = 431

 Score = 42.6 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 12/204 (5%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196
            +Q E  +N L +      D      +   +++E N         K +A+ + K    + 
Sbjct: 231 QEQIEDLQNRLAKVETDLID-TDQDGVADYLDREPNTVSGVAVNTKGVAVDQNK--NGVP 287

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQ 253
            ++ STL    A             +G  +    I D      F  +S+ P   ++  + 
Sbjct: 288 DELESTLDNRYAKKSDIPTSTPAIASGDDVIKKLIEDGYVNVYFQFNSTKPETYSLESIN 347

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            + + +  +      + G+ D       A  N RLS  RA     +++ +G+S  R++  
Sbjct: 348 YLIKYMTENAGASAQLVGYADEI---GNASTNQRLSERRAQKVKDIMVAAGISASRLTA- 403

Query: 313 SGFAHHRLKIAS-DPMNSANRRID 335
           +G         +  P     RR+ 
Sbjct: 404 TGNGEDASVDKNSAPARQLVRRVT 427


>gi|116253708|ref|YP_769546.1| OmpA family peptidoglycan-associated lipoprotein precursor
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258356|emb|CAK09458.1| putative OmpA family peptidoglycan-associated lipoprotein precursor
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 177

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSSSIRADASQTLDRQAQWLGRYPNYQITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 125 AAAAKDYLASRGVPAQRLKTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|229029881|ref|ZP_04185950.1| Excalibur domain protein [Bacillus cereus AH1271]
 gi|228731389|gb|EEL82302.1| Excalibur domain protein [Bacillus cereus AH1271]
          Length = 312

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 12/187 (6%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A   I    +    ++  
Sbjct: 66  FATLSLILFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFVALSSILAPSSEKTTATNK 125

Query: 97  KIDLS----------IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           ++  +            +  T+   D K  +  Q ++ +  ++     +  QQ E  + +
Sbjct: 126 QVASNNAEKKDDKKKEADEKTQKQEDEKRLADEQARKQEDEKSQAEEQARKQQEEQKRLA 185

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
                ++ ++  +  D +    +EE   L      K    + +KRL D   +        
Sbjct: 186 DEEARKQQEEQKRLADEQARKQQEEQKRLADEQARK--QQEEQKRLADEQARKQQEEQKR 243

Query: 207 VADNIVK 213
           +AD   +
Sbjct: 244 IADEQAR 250


>gi|222475318|ref|YP_002563735.1| Peptidoglycan-associated lipoprotein precursor [Anaplasma marginale
           str. Florida]
 gi|222419456|gb|ACM49479.1| Peptidoglycan-associated lipoprotein precursor [Anaplasma marginale
           str. Florida]
          Length = 255

 Score = 42.6 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIAS- 324
           I GHTD+   R     N  L   RA +  + ++     +S    ++  G A   + + S 
Sbjct: 97  IIGHTDS---RGTEEYNLALGERRANAVKEFILGCDRSLSPRISTQSRGKAEPEVLVYSS 153

Query: 325 -----DPMNSANRRIDILVE 339
                +  ++ NRR+ ++VE
Sbjct: 154 DFKEAEKAHAQNRRVVLIVE 173


>gi|288956961|ref|YP_003447302.1| hypothetical protein AZL_001200 [Azospirillum sp. B510]
 gi|288909269|dbj|BAI70758.1| hypothetical protein AZL_001200 [Azospirillum sp. B510]
          Length = 73

 Score = 42.6 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
           G TDA         N  LS  RA      L + GV   ++  + G        ++D    
Sbjct: 5   GFTDAQ---GARAANVTLSQQRAQIIADELRRRGV---QVQSVMGLGPDLPVTSNDTEEG 58

Query: 330 A--NRRIDILVEDR 341
              NRR+++ +  R
Sbjct: 59  RDKNRRVEVWLRQR 72


>gi|298481919|ref|ZP_07000108.1| major outer membrane protein OmpA [Bacteroides sp. D22]
 gi|298271783|gb|EFI13355.1| major outer membrane protein OmpA [Bacteroides sp. D22]
          Length = 394

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  + +    E    L  + E+  L     V +I G+ DA      ++ N RLS +RA +
Sbjct: 294 FKINRTKLSNEARANLGLLAEIIKLGDPETVYTITGYADAG--TGSSKGNERLSKERAEN 351

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
            Y  L+K  GVSE ++ +I           +DP  S 
Sbjct: 352 VYDCLVKEFGVSEKQL-RIDYKGGVDNMFYNDPRLSR 387


>gi|167835314|ref|ZP_02462197.1| cytochrome c oxidase, subunit II [Burkholderia thailandensis
           MSMB43]
          Length = 117

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S    +    +    E +    +  +++ G TD +     A  N  L+  RA + 
Sbjct: 21  FETGKSELPADAKDAIAAAAEYVKAHPDAKLALSGFTDKT---GSADANAELARRRAQAV 77

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +GV+++RI       I+G A  +            RR++I
Sbjct: 78  RDALKTAGVAQERIILKKPETITGGADAKEA----------RRVEI 113


>gi|29345476|ref|NP_808979.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337368|gb|AAO75173.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 400

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  + +    E    L  + E++     E + +I G+ DA      ++ N RLS +RA +
Sbjct: 300 FKINRTKLSNEARANLGLLAEIIKSGDPETVYTITGYADAG--TGSSKGNERLSKERAEN 357

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
            Y  L+K  GVSE ++ +I           +DP  S 
Sbjct: 358 VYDCLVKEFGVSEKQL-RIDYKGGVDNMFYNDPRLSR 393


>gi|332830269|gb|EGK02897.1| hypothetical protein HMPREF9455_01147 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 383

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLD 290
           N   F   S+       V +    + L  +    + + G+ D    +      N +LS  
Sbjct: 281 NVVFFRLGSANIDKNQEVSIFNTAKYLQDNPSAKVKVVGYADK---KTGTPSINEKLSEK 337

Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           RA +    L+K   +  +R++ +          A +  N    R+ I V
Sbjct: 338 RAKNVANELIKKYNIDSNRVT-VEWKGDTVQPYAENAWN----RVAIFV 381


>gi|300113444|ref|YP_003760019.1| hypothetical protein Nwat_0743 [Nitrosococcus watsonii C-113]
 gi|299539381|gb|ADJ27698.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 237

 Score = 42.6 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 24/122 (19%)

Query: 236 MFDKSSSIPLPETIVVLQKIGE----VLAHST---EVISIRGHTDA-----SPFRNIARD 283
           +F   S+        +L         +L H     + I I GHT +              
Sbjct: 99  LFATGSTEIRQRFKEILSDFFPRYLVILKHYKDSIDEIRIEGHTSSIWNNRVSETKAYFL 158

Query: 284 NWRLSLDRAYSAYQVLMKSGVSE--------DRISKISGFAHHRLKIAS--DPMNSANRR 333
           N  LS  R  S    + +  +           R     GF+  RL + +  +   + +RR
Sbjct: 159 NMLLSQGRTRSVLHYVYE--LPAVERDRDWVKRHFAAVGFSSSRLVLDAQGNEDRARSRR 216

Query: 334 ID 335
           + 
Sbjct: 217 VS 218


>gi|149370443|ref|ZP_01890132.1| OmpA domain protein [unidentified eubacterium SCB49]
 gi|149355994|gb|EDM44551.1| OmpA domain protein [unidentified eubacterium SCB49]
          Length = 432

 Score = 42.6 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +SS P   ++  +  +   L  +      + G+ D     N A  N +LS  RA   
Sbjct: 332 FKTNSSTPEKYSLEAVNYLKTYLIQNPSASAQLIGYADE--IGNEAY-NAQLSEKRAKRV 388

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRID 335
           Y +L+ SG+  +R+S  +G         +        RR+ 
Sbjct: 389 YDILVASGIDANRLSH-TGNGEDTSVDKNSSEARQLVRRVT 428


>gi|295087269|emb|CBK68792.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Bacteroides xylanisolvens XB1A]
          Length = 400

 Score = 42.6 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  + +    E    L  + E++     E + +I G+ DA      ++ N RLS +RA +
Sbjct: 300 FKINKTKLSNEARADLGLLAEIIKSGDPETVYTITGYADAG--TGSSKGNERLSKERAEN 357

Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330
            Y  L+K  GVSE ++ +I           +DP  S 
Sbjct: 358 VYNCLVKEFGVSEKQL-RIDYKGGVDNMFYNDPRLSR 393


>gi|213582299|ref|ZP_03364125.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 78

 Score = 42.6 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NR 332
           N  LS  RA S    L+  G+  D+IS   G         +      P  +       +R
Sbjct: 2   NQGLSEKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDR 60

Query: 333 RIDILVE 339
           R++I V+
Sbjct: 61  RVEIEVK 67


>gi|241206183|ref|YP_002977279.1| peptidoglycan-associated lipoprotein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860073|gb|ACS57740.1| peptidoglycan-associated lipoprotein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 177

 Score = 42.6 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I++ GH D    R     N  L   R
Sbjct: 68  DRIFFDTDSSSIRADASQTLDRQAQWLGRYPNYQITVEGHADE---RGTREYNLALGARR 124

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L   GV   R+  IS +   R     D ++  S NRR
Sbjct: 125 AAAAKDYLASRGVPAQRLKTIS-YGKERPVAVCDDISCWSQNRR 167


>gi|124267308|ref|YP_001021312.1| membrane-bound proton-translocating pyrophosphatase [Methylibium
           petroleiphilum PM1]
 gi|124260083|gb|ABM95077.1| Inorganic diphosphatase [Methylibium petroleiphilum PM1]
          Length = 823

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           T  G  I + +      F  +SS         L  + + +A + +   I G+ DA+    
Sbjct: 714 TADGASIKVENGVVKFYFASASSSLAGGAAEALADVVKGVA-AGKKAVISGYHDAT---G 769

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
               N  L+  RA +    L  +GV+ED+I             A D   +  RR+++ +E
Sbjct: 770 DPDKNVELAKQRALAVRDALKAAGVAEDKIE----LKKPEQLNAGDAAEA--RRVEVKLE 823


>gi|270339927|ref|ZP_06006476.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333289|gb|EFA44075.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 388

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           + K      P +   K L+  +   L   A+   +        N++       T   +  
Sbjct: 224 LGKATWEKTPDVDAIKALSQSQIDALN--AQLNDANAENARLKNLLANQPKPETPKAVK- 280

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
             +    +  F+ + +    +  +V +Q + +    +   +++ G+ D++        N 
Sbjct: 281 EFVTTPVSVFFNINRTNIASQKDLVNVQAVAKYAKENGSKLAVTGYADSA--TGTPEINQ 338

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
           RLS  RA +    L+K G+   +IS +  G       I      S NRR  + V D
Sbjct: 339 RLSEGRAATVADELVKLGIDRSKISTVGKGGVDDLSPI------SFNRRATVQVTD 388


>gi|170702223|ref|ZP_02893126.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132858|gb|EDT01283.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10]
          Length = 233

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
           +S N            + +  + R +RL D A+KI    +      +   ++   T   +
Sbjct: 49  ESSNACMRAAQRVCGDQPVRPLDRLQRLSDPAQKIDDPGAMTFQCGVPPQLVV-ATPAPV 107

Query: 225 LISIIDQRNTPMFDKSSSIP---LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRN 279
               I      +F    +      PE    L +I   L+ +  V  + + G+TD      
Sbjct: 108 AEKPIVLAADALFAFDKADVDAIKPEGRAELDEIASKLSAAPSVRHVDVVGYTDRL---G 164

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-------- 331
               N  LS  RA +    L   GV+    ++I      ++          N        
Sbjct: 165 SDEYNAALSQRRAETVKWYLTSQGVT----AQIDARGDGKVL-PGTACEMRNRAELIRCL 219

Query: 332 ---RRIDI 336
              RR++I
Sbjct: 220 APDRRVEI 227


>gi|240949813|ref|ZP_04754142.1| major outer membrane protein [Actinobacillus minor NM305]
 gi|240295730|gb|EER46425.1| major outer membrane protein [Actinobacillus minor NM305]
          Length = 372

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L      +         I + G+ D          N +LS  RA
Sbjct: 252 LFAFGKSSLKPAAAQALDAANNEINALGLANPAIQVNGYADRI---GKQAANLKLSQRRA 308

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G +   ++ + G+        +  D +            +RR+++ V+  
Sbjct: 309 ETVANYLVSKGQNAANVTAV-GYGSANPVTGNTCDAVKGRKALIACLAPDRRVEVQVQGS 367

Query: 342 Q 342
           +
Sbjct: 368 K 368


>gi|325474220|gb|EGC77408.1| OmpA family protein [Treponema denticola F0402]
          Length = 167

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
           K+     +        + V  ET +     ++ D   T  F   S      T  +L++IG
Sbjct: 24  KQKEEKPAEPEKTQEQEVVKEETDKKANEKNMSDDYYTVYFAPQSYQTDQFTAQILKEIG 83

Query: 257 EVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
           E L A + + I I GH+      +  +D  R++L RA +      K  + +     + G 
Sbjct: 84  EDLKAKNVKKIVIYGHSAKL---DSQKDEDRIALQRAIAVASYFQKMKLFDANNIIVEGK 140

Query: 316 AHHRLKIASD--PMNSANRRIDI 336
                  +         NRR++I
Sbjct: 141 GAREPARSHSEITDRFKNRRVEI 163


>gi|317051627|ref|YP_004112743.1| OmpA/MotB domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946711|gb|ADU66187.1| OmpA/MotB domain protein [Desulfurispirillum indicum S5]
          Length = 193

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 18/107 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW---RLSLDRAY 293
           FD +           ++++   L      +++ GH+D           W   R++  RA 
Sbjct: 100 FDLNGFTLTEAQKERIKELASSLQ---GSVAVTGHSD------HFGPAWAKERVANRRAE 150

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           S    L   GVS   ++  +G + H  +I+++P  + NRR +I + +
Sbjct: 151 SVAAYLTTLGVS---VASATGQSDHN-QISTNP--AQNRRAEITLTE 191


>gi|302879780|ref|YP_003848344.1| peptidoglycan-associated lipoprotein [Gallionella capsiferriformans
           ES-2]
 gi|302582569|gb|ADL56580.1| peptidoglycan-associated lipoprotein [Gallionella capsiferriformans
           ES-2]
          Length = 169

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           S        ++Q   + L+      + + G+ D    R     N  L   RA    ++L 
Sbjct: 71  SAVQDADKPLVQAHAKYLSEHANRTVKLEGNCDE---RGSNEYNLGLGQRRADGVQKMLE 127

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336
             G    +++ +S +     K A       S NRR D+
Sbjct: 128 LGGAKAAQVTSVS-YGEEMPKAAGHDEASWSQNRRTDL 164


>gi|57339654|gb|AAW49814.1| hypothetical protein FTT0583 [synthetic construct]
          Length = 428

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 309 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 368

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 369 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 408


>gi|256828177|ref|YP_003156905.1| hypothetical protein Dbac_0362 [Desulfomicrobium baculatum DSM 4028]
 gi|256577353|gb|ACU88489.1| protein of unknown function DUF748 [Desulfomicrobium baculatum DSM
            4028]
          Length = 1330

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 230  DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273
            +  N   F    ++P PET+  +Q + ++LA      ISI GH+D
Sbjct: 1147 EDLNKLPFPPGLAVPAPETMPNMQALADILAQRPGIKISIHGHSD 1191


>gi|89889840|ref|ZP_01201351.1| OmpA family protein [Flavobacteria bacterium BBFL7]
 gi|89518113|gb|EAS20769.1| OmpA  family protein [Flavobacteria bacterium BBFL7]
          Length = 625

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 100/288 (34%), Gaps = 33/288 (11%)

Query: 54  INATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109
           +N   DD+   I +    YF+  G +L      +F  ++    +  + ++  +D+     
Sbjct: 325 VNTAGDDSFPWIAEDGTLYFSSNG-HLGLGGLDVFKYKDGKVSNLGSPVNSVMDDFAFTY 383

Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQ----------SEHCKNSLTRDSEKGKDLCK 159
           S +   G  +  ++  +  ++I+ ++  +                  +       +D   
Sbjct: 384 SEETGKGFVSSNRKGGKGSDDIYAVNRIEICEVAVTVTAVDAQTNQPIPGAIVSLQDADG 443

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           ++   ++ + E N        ++ +A   K + +     +S      VA+     V    
Sbjct: 444 NSLPSQTTDGEGNAMFTTECNKEFVARGVKDQYESGQSDLS------VAEEATAMVTVNM 497

Query: 220 TRTGILIS---IIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
                +I    ++D++   N   FD  +S   P+  + L ++   +      + +   T 
Sbjct: 498 EP---IIPDPPVVDEKIILNKIYFDLDASNIRPDAALELDRLVSFMKKYP-ELEVMAETY 553

Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
           A   R     N  L+  RA S    ++  GV   R++ + G       
Sbjct: 554 AD-IRGSDSYNLALTQRRAESIVAYVVSQGVDASRLTAV-GRGEANPV 599


>gi|255014613|ref|ZP_05286739.1| putative outer membrane protein [Bacteroides sp. 2_1_7]
          Length = 482

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +S   + E+ +V L  I E+       ++I G  D++        N  L   RA  
Sbjct: 384 FFQLNSDRLVDESQIVNLDDIAEISKAHNLRVTISGAADSA--TGTQSINQELGQRRARY 441

Query: 295 AYQVLMKSGVSEDRIS 310
             Q L+  GV E  I 
Sbjct: 442 VAQKLIDRGVPEGLIH 457


>gi|189423681|ref|YP_001950858.1| serine/threonine protein kinase [Geobacter lovleyi SZ]
 gi|189419940|gb|ACD94338.1| serine/threonine protein kinase [Geobacter lovleyi SZ]
          Length = 734

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328
            TDA    +    +  LS  R     Q L   G+    ++   GF        +      
Sbjct: 668 FTDA---SSDPHSSLALSHQRVGQVAQELRSRGIM---VAAAEGFGSSLPVADNSTKEGR 721

Query: 329 SANRRIDILVEDR 341
             N R++I +  R
Sbjct: 722 QRNNRVEIWLAKR 734


>gi|56694983|ref|YP_165329.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56676720|gb|AAV93386.1| OmpA domain protein [Ruegeria pomeroyi DSS-3]
          Length = 518

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS P  ++   + ++ + L             G +D       A  N R++L RA 
Sbjct: 411 FETGSSRPDAQSRTNISQLAQELESGAYDARQLLFVGFSDGD---GAAEGNTRIALKRAE 467

Query: 294 SAYQVLMKSG--VSEDRI-SKISGFAHHRLKIASDP--MNSANRRIDILVE 339
           +    ++++   +   R+   +  F         D       NRR+++ V+
Sbjct: 468 AVRDAVLQTAETLDPARVEVSVDAFGEALPMACDDSDWGRQVNRRVEVWVK 518


>gi|86160426|ref|YP_467211.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776937|gb|ABC83774.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 359

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
           L  +   LA    V + +    DA+      +   RL+   A +A   L + GV+  R++
Sbjct: 270 LADLVVALAAVPGVAVRVEAFVDATADAVADQ---RLTQAMADAATGRLRELGVAAARLT 326

Query: 311 KISGFAHHRLKIASDP--MNSANRRIDIL 337
            + G+   R  + +      +ANRR++I+
Sbjct: 327 GV-GYGGERPLLPNFTVRGRTANRRLEIV 354


>gi|228900776|ref|ZP_04064992.1| Excalibur domain protein [Bacillus thuringiensis IBL 4222]
 gi|228858876|gb|EEN03320.1| Excalibur domain protein [Bacillus thuringiensis IBL 4222]
          Length = 329

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 1/186 (0%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A  GI    +    ++  
Sbjct: 68  FAILSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALLGISAPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K +D
Sbjct: 128 KVASNNEEQKDSEKKKELEKKEADEKTQKQEDEKRQAEEQARKQEDEKRQAEEQARKQED 187

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
             +  + E++  +E+   L      K    KR    Q   ++    L+   A    +   
Sbjct: 188 EKRLAE-EQARKQEDEKRLAEEQARKQEDEKRLAEEQARKQEDEERLADEQARKQQEEQK 246

Query: 217 FETTRT 222
            +    
Sbjct: 247 RQADEQ 252


>gi|255010398|ref|ZP_05282524.1| hypothetical protein Bfra3_14774 [Bacteroides fragilis 3_1_12]
 gi|313148197|ref|ZP_07810390.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313136964|gb|EFR54324.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 365

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249
           + +  + +++      +   N+    +    +  + I I       MFD+ SS    E  
Sbjct: 232 EEVMQMKQELKERRKIMDGQNL----MIVPQKDALSIDI-------MFDEFSSFVSEEQG 280

Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDR 308
             +  IGE +  +   I I   +D    +   R    L   R+ +  ++L  K  ++ +R
Sbjct: 281 QKIDGIGEWMKDNNSSIQIIAFSDNLTDKKADR---ELRSRRSEAIRKILIEKHHIAPER 337

Query: 309 I 309
           I
Sbjct: 338 I 338


>gi|224456780|ref|ZP_03665253.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874523|ref|ZP_05247233.1| fopA, outer membrane associated protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840522|gb|EET18958.1| fopA, outer membrane associated protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158878|gb|ADA78269.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 392

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 381


>gi|312196129|ref|YP_004016190.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
 gi|311227465|gb|ADP80320.1| OmpA/MotB domain protein [Frankia sp. EuI1c]
          Length = 452

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
           +   +  +F + S+   P+  + L  +  EV      V+++ GHTD +        N  L
Sbjct: 330 VSLPDQVLFARDSNDLSPDADLTLTAVVSEVRGLRGSVVNVIGHTDTT---GTDAYNRLL 386

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL---------KIASDPMNSA--NRRIDI 336
           S  RA +    L+  G+    ++  +G                  +D   +   +RR+++
Sbjct: 387 SKSRADAVADALVARGLP---VASRTGAGSSIPGPGCGPEHRPDGTDDERAMRCDRRVEL 443

Query: 337 LV 338
           ++
Sbjct: 444 VI 445


>gi|254369500|ref|ZP_04985512.1| hypothetical protein FTAG_00492 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122450|gb|EDO66590.1| hypothetical protein FTAG_00492 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 375

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 265 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 324

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 325 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 364


>gi|290953550|ref|ZP_06558171.1| outer membrane protein FopA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313154|ref|ZP_06803836.1| outer membrane protein FopA [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 392

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 381


>gi|89256632|ref|YP_513994.1| outer membrane associated protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|167011028|ref|ZP_02275959.1| outer membrane associated protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144463|emb|CAJ79767.1| outer membrane associated protein [Francisella tularensis subsp.
           holarctica LVS]
          Length = 392

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 282 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 341

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 342 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 381


>gi|56707711|ref|YP_169607.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670182|ref|YP_666739.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370217|ref|ZP_04986223.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|56604203|emb|CAG45216.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320515|emb|CAL08599.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568461|gb|EDN34115.1| outer membrane associated protein [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 382


>gi|225024563|ref|ZP_03713755.1| hypothetical protein EIKCOROL_01438 [Eikenella corrodens ATCC
           23834]
 gi|224942714|gb|EEG23923.1| hypothetical protein EIKCOROL_01438 [Eikenella corrodens ATCC
           23834]
          Length = 176

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIA 281
            I++            ++  LPE    L ++ E L       + I++ GHTD        
Sbjct: 49  RINLSADALFRFNQSDAADMLPEGKATLDRLAENLVSRQAHIDSIALTGHTDRL---GSE 105

Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
           + N+ L L RA +    L   GV       ++     +    +
Sbjct: 106 QYNYNLGLRRAQTVKNYLQDKGVQAP--ISVASAGESQPVTTA 146


>gi|89891400|ref|ZP_01202906.1| hypothetical protein BBFL7_00541 [Flavobacteria bacterium BBFL7]
 gi|89516431|gb|EAS19092.1| hypothetical protein BBFL7_00541 [Flavobacteria bacterium BBFL7]
          Length = 486

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  +S+ P   ++  +  +   +  +     ++ G+ D          N  LS  RA   
Sbjct: 386 FQFNSTKPALYSLGAINTLVTYMKDNPNATATLTGYADEL---GSPAYNKNLSDRRAKMV 442

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRID 335
           + VL+ SGV   R+S  +G         +        RR+ 
Sbjct: 443 HDVLVASGVDASRLSH-NGDGEDASVDKNSSEARQLVRRVT 482


>gi|298291606|ref|YP_003693545.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
 gi|296928117|gb|ADH88926.1| OmpA/MotB domain protein [Starkeya novella DSM 506]
          Length = 725

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 22/218 (10%)

Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182
                   +   + +Q      N ++  ++       +  +                 + 
Sbjct: 510 PSPDEHQRLVAAAKAQFLGAPVNDVSALAQGAPQGFATAAMAAMRELARLEAGEARFDDA 569

Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT---------GILISIIDQRN 233
            L +            I + L+  +       V  + T              I+ +  + 
Sbjct: 570 KLKLTGTALYAGAVASIHANLATALPPGFALEVTLDVTSRHEAVDHAACQKSINELLDKG 629

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292
           T +F    +   P +  +L  +    A   +  I I   T   P    A     L+  RA
Sbjct: 630 TIVFKGQGADIDPASQGLLDHVAAAAASCPDTLIEI---TVRQPQTTPA-----LASARA 681

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
            S  Q L  +G++ DR+  I G        A  P   A
Sbjct: 682 QSVTQYLAAAGIAPDRLF-IGG---RPALAAQTPEAGA 715


>gi|169656658|ref|YP_001428834.2| OmpA (outer membrane protein A) family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|164551726|gb|ABU61878.2| OmpA (outer membrane protein A) family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 382


>gi|221067138|ref|ZP_03543243.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
 gi|220712161|gb|EED67529.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
          Length = 174

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263
              V+      V          + + +      F    +         L  + + +A   
Sbjct: 47  EAAVSAPSATNVPVVVIEETARVIVENGVVKFYFVSGKAEVAAGANEALSDVVKGVAE-G 105

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           +   I G  DA+     A  N  L+  RA +    LM  GV+ED++           +  
Sbjct: 106 KRALISGFHDAT---GSAEINAELAKQRAQAVQAALMALGVAEDKVEL-----KKPEQTQ 157

Query: 324 SDPMNSANRRIDILVED 340
           +D  N+  RR+++++ D
Sbjct: 158 ADGSNAEARRVEVILAD 174


>gi|254367946|ref|ZP_04983966.1| outer membrane associated protein [Francisella tularensis subsp.
           holarctica 257]
 gi|134253756|gb|EBA52850.1| outer membrane associated protein [Francisella tularensis subsp.
           holarctica 257]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 382


>gi|115315051|ref|YP_763774.1| outer membrane protein FopA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115129950|gb|ABI83137.1| outer membrane protein FopA [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 382


>gi|291514294|emb|CBK63504.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Alistipes shahii WAL 8301]
          Length = 490

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +++    P  +V L ++  V       + + G  D++       D   LS+ RA  
Sbjct: 382 FFSLNTARLTDPSQLVNLDELVRVATKYGLTVKVTGAADSATGTVGIND--ALSVSRADY 439

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIAS 324
               L K G+  DRI+K    G + +    A+
Sbjct: 440 IASELNKRGLPSDRITKTGEGGISDYVPTEAN 471


>gi|134302319|ref|YP_001122288.1| ompA family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050096|gb|ABO47167.1| ompA family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294
           F    +    +    +      +  S    ++++G+       +     N +LS  RA +
Sbjct: 283 FAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQA 342

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335
               + + G+  ++I    GF ++         +  N+R++
Sbjct: 343 VADYMKQLGLDSEKII-TKGFGYNDTLGGIHKSDPRNQRVE 382


>gi|294787945|ref|ZP_06753189.1| putative OmpA/MotB [Simonsiella muelleri ATCC 29453]
 gi|294484238|gb|EFG31921.1| putative OmpA/MotB [Simonsiella muelleri ATCC 29453]
          Length = 180

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 30/202 (14%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL-SKEKILAMKRKKRLQDLAKK 198
           SE   +S+  +  +   +  +T   +S        +    + + I+A +        A  
Sbjct: 5   SEQAPSSIPVNETQAASIAANTSNIQSQGMTAPSDVGDDDTVQIIVASQVVSAPSASAVA 64

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
            SST   ++A + V+    +    G ++          F    +     T+  L+ I   
Sbjct: 65  ASSTAKAILAADGVQQEQSKVVVDGDIV-------RFYFATGKADVTANTLESLKGIVNG 117

Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318
           +    + + +        + N+   N  L+ DRA +   VL+ +G+ +  I         
Sbjct: 118 VKAGKKAVILT-------YSNVE-SNENLARDRALAVRSVLLAAGIPDGSIQ-------- 161

Query: 319 RLKIASDPMNSAN--RRIDILV 338
                S+P    N  RR+++++
Sbjct: 162 ----VSNPTAETNDSRRVEVVL 179


>gi|304412857|ref|ZP_07394455.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|307306021|ref|ZP_07585766.1| OmpA/MotB domain protein [Shewanella baltica BA175]
 gi|304348774|gb|EFM13194.1| OmpA/MotB domain protein [Shewanella baltica OS183]
 gi|306910894|gb|EFN41321.1| OmpA/MotB domain protein [Shewanella baltica BA175]
          Length = 280

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + S+   +   +L ++ E L     E I + G  D+         N RL+  RA S
Sbjct: 176 LFMVNESVLTSDGRNMLVRMIEDLRGKPIESIVVYGIADS---SGAYASNRRLADARANS 232

Query: 295 AYQVLMKSGVSEDRIS 310
               L   G+ +  I 
Sbjct: 233 VKYFLQTEGMRDTPIF 248


>gi|332667555|ref|YP_004450343.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336369|gb|AEE53470.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 684

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278
           T   G+  S+I + N       S         +   +   +      + + GHTD     
Sbjct: 564 TNEEGMRFSVIYEFNE------SKAISIYEKYLTDVVIPKIPQ-GGTVIVHGHTD---II 613

Query: 279 NIARDNWRLSLDRAYSAYQVLMKS----GVSEDRISKISGFAHHRLKIASDPMNSA---- 330
                N +LS++RA    +++       G ++ +  ++ G          D         
Sbjct: 614 GDETYNQKLSMERANDVKRIMENGLSRLGRNDVKF-QVYGSGEDESMSPFDNNYPEERFY 672

Query: 331 NRRIDILVEDR 341
           NR + I +  R
Sbjct: 673 NRTVIIDIVPR 683


>gi|89073110|ref|ZP_01159649.1| hypothetical protein SKA34_01397 [Photobacterium sp. SKA34]
 gi|89051063|gb|EAR56520.1| hypothetical protein SKA34_01397 [Photobacterium sp. SKA34]
          Length = 336

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +    +         L ++   +  +      I G  D       A+ N ++S +RA + 
Sbjct: 235 YQNGQTKLNDYGRYNLGEVIATMQANPEVNAQIIGRADKV---GSAKINEKVSAERAANV 291

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDILVE 339
              L  +G+   R++ +S   ++     +D     N   R + I+++
Sbjct: 292 ANYLEANGIDASRLT-VSSVGYNNPL-KTDTSTKTNYVQRSVQIILK 336


>gi|222085721|ref|YP_002544251.1| hypothetical protein Arad_2037 [Agrobacterium radiobacter K84]
 gi|221723169|gb|ACM26325.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 309

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 46/233 (19%)

Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212
           K  DL  +   +   +  E                + + L++LAK  +      VA    
Sbjct: 59  KSGDLSPADQAKLEKDWRELVLARETLDSIGTEGTKPEDLRELAKVAAVLKQHGVALAKA 118

Query: 213 KGVLFETTRTGIL---------ISIIDQRNTPMFDKSSSIPLPETIVVL-----QKIGEV 258
              +      G+          I  ++   T  F   S+      + +L      +I   
Sbjct: 119 PDEVDRLLAAGLGGTGPHEWPPIINLEDVRTNYFQSGSTDLTRTFVQLLNTTVADEIAGN 178

Query: 259 LAHST-EVISIRGHTDASPFRNIAR----------------------DNWRLSLDRAYSA 295
           L      ++ + GHTD  P                            DN  L L RA + 
Sbjct: 179 LNDYDANIVEVIGHTDEQPVARRVSNLDDTLIGAMDGRLPISAVEPADNAGLGLARAIAV 238

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-------RRIDILVEDR 341
             VL  +   + + + I   +  +L +  D +++         RRI+I V  R
Sbjct: 239 ANVLKAN--PKLKNATILPMSAAQLILPGDTISAGQAGAVETRRRIEIRVRGR 289


>gi|302540439|ref|ZP_07292781.1| linear gramicidin synthetase LgrC [Streptomyces hygroscopicus ATCC
            53653]
 gi|302458057|gb|EFL21150.1| linear gramicidin synthetase LgrC [Streptomyces himastatinicus ATCC
            53653]
          Length = 5647

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 25/252 (9%)

Query: 66   EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
                     N +     + +     E     + D +         +    G ++      
Sbjct: 4889 ADSITGIFINTLPVRLTVSEGDTAVEWMRGLQADQADARGFGHVPLAQLQGWSDVPGGAD 4948

Query: 126  RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
              E+ + + +    S        R  E       +  L   ++      +      ++  
Sbjct: 4949 LFESLVVFENYPINSSAAAEHGLRVRELQALESTNYALTVVVSPGSELSVELGYDPRLFE 5008

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
                + L      +   L+    D  +     +T    +   +++  N       ++ P 
Sbjct: 5009 ETTAQGLAAQLTHVLGALAAAPDDQPLD--RIDTLPDALRTRLLEDWND------TARPA 5060

Query: 246  PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD----RAYSAYQVLMK 301
            P+T      + E+   + +      H DA     +A D   LS      RA      L+ 
Sbjct: 5061 PQTT-----LAELFEAAADR-----HPDAPAV--LAPDV-ELSYAELDARANRLAHRLIA 5107

Query: 302  SGVSEDRISKIS 313
             GV   RI  + 
Sbjct: 5108 GGVGPGRIVALV 5119


>gi|313149002|ref|ZP_07811195.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313137769|gb|EFR55129.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 445

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           F + S+          L +I E L    +  + + G+ D         D N ++SL RA 
Sbjct: 344 FKRGSAYLNVALYKNELSRIVETLKKYPDLKVILLGYAD----HTGNPDINQKISLQRAE 399

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR--IDI 336
                L K G+   RI+ + G     L    +  +   RR  ++I
Sbjct: 400 VLAAYLEKKGIDSKRIN-VKGECIDTLTSDPNNYSVLARRVIVEI 443


>gi|255011191|ref|ZP_05283317.1| hypothetical protein Bfra3_18764 [Bacteroides fragilis 3_1_12]
          Length = 435

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           F + S+          L +I E L    +  + + G+ D         D N ++SL RA 
Sbjct: 334 FKRGSAYLNVALYKNELSRIVETLKKYPDLKVILLGYAD----HTGNPDINQKISLQRAE 389

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR--IDI 336
                L K G+   RI+ + G     L    +  +   RR  ++I
Sbjct: 390 VLAAYLEKKGIDSKRIN-VKGECIDTLTSDPNNYSVLARRVIVEI 433


>gi|254877305|ref|ZP_05250015.1| outer membrane associated protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843326|gb|EET21740.1| outer membrane associated protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 391

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIAR-DNWRLSLDR 291
           F   S+    +       I   +          ++++G+       +     N +LS  R
Sbjct: 281 FAYDSANLNSKGKE---AIASFVNFVKNSDIKTVTVKGYASQGTTGSEFEIYNQKLSERR 337

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           A +    + + G+  DRI    GF +          ++ N+R+
Sbjct: 338 AEAVADYMKQLGLDNDRII-TKGFGYENTLDGIHKSDARNQRV 379


>gi|241668774|ref|ZP_04756352.1| outer membrane associated protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 390

 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIAR-DNWRLSLDR 291
           F   S+    +       I   +          ++++G+       +     N +LS  R
Sbjct: 280 FAYDSANLNSKGKE---AIASFVNFVKNSDIKTVTVKGYASQGTTGSEFEIYNQKLSERR 336

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           A +    + + G+  DRI    GF +          ++ N+R+
Sbjct: 337 AEAVADYMKQLGLDNDRII-TKGFGYENTLDGIHKSDARNQRV 378


>gi|326562208|gb|EGE12536.1| hypothetical protein E9G_01148 [Moraxella catarrhalis 7169]
 gi|326567162|gb|EGE17284.1| hypothetical protein E9Q_07464 [Moraxella catarrhalis BC1]
          Length = 204

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +  +  QD  ++I   L    AD++ K    +  +  + IS +      +F    S    
Sbjct: 17  QIAEEYQDTQEQIYKALLHEFADDLPKW-GAKIDKDTLTISFLSPD--ILFKTGQSDLQD 73

Query: 247 ETIVVLQKI----GEVLAHST---EVISIRGHTDASPFRNIARD-----NWRLSLDRAYS 294
               +L        +V+ H       I I GHT +     +  D     N RLS DR   
Sbjct: 74  NYKEILSDFFPRYIKVIDHYKDSINEIRIEGHTSSEWAAGVDADIAYFENMRLSQDR--- 130

Query: 295 AYQVLM 300
              VL 
Sbjct: 131 TRTVLQ 136


>gi|308049988|ref|YP_003913554.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
 gi|307632178|gb|ADN76480.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799]
          Length = 285

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330
           +TD          N  ++  +A +    L++SG+SE+RI   +     R    +      
Sbjct: 218 YTDN---HRSKATNQAITEQQANTLRSYLVQSGISEERIIA-TAHGEQRHIANNRTTRGR 273

Query: 331 --NRRIDILVE 339
             NRR+ + VE
Sbjct: 274 DLNRRVVVRVE 284


>gi|323508304|emb|CBQ68175.1| related to lipase [Sporisorium reilianum]
          Length = 675

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
           R TP+     S PLP   V +   G++L+     + I    D  PF +   D W  S  R
Sbjct: 200 RGTPLVYSLGSEPLPYPKVRMFSFGDLLSKF---VHIAAFLD-LPFFDAHADAWHFSARR 255

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
             +  + L+  GV+          A  + +  SDP  +
Sbjct: 256 RKAVQRSLLPGGVAAQ-------TAPRKERRTSDPEAA 286


>gi|149193985|ref|ZP_01871083.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
 gi|149135938|gb|EDM24416.1| OmpA/MotB [Caminibacter mediatlanticus TB-2]
          Length = 196

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 26/192 (13%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
           S   + E  +    +  +++ +  ++     P +     A  +++ L      +S   + 
Sbjct: 20  SKQPNLENAQMQENNATVQEQMTNQQQVVTQPETVNTENANVQEENLTATTVTVSKMQNN 79

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-- 263
                 +  ++                    FD       P+    ++K+ +++  +   
Sbjct: 80  QEFAKKLASIVVY------------------FDFDKYNIRPDQWPKVEKLAKLIKKNPSN 121

Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
             + I G+ D          N+ L L RA S    L+K GV   +++ IS +        
Sbjct: 122 YTVRIEGNCDEW---GTEEYNYALGLKRANSVKNALIKLGVDPKKLTIIS-YGELNPVCT 177

Query: 324 SDPM--NSANRR 333
           +        NRR
Sbjct: 178 AHAKWCWRLNRR 189


>gi|261212910|ref|ZP_05927194.1| hypothetical protein VCJ_003186 [Vibrio sp. RC341]
 gi|262402954|ref|ZP_06079514.1| hypothetical protein VOA_000935 [Vibrio sp. RC586]
 gi|260837975|gb|EEX64652.1| hypothetical protein VCJ_003186 [Vibrio sp. RC341]
 gi|262350453|gb|EEY99586.1| hypothetical protein VOA_000935 [Vibrio sp. RC586]
          Length = 217

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 36/196 (18%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQRN 233
            L ++ ++   + K + +  +K    +   + D   K +     E  R  + ++      
Sbjct: 20  ALMRDAVVERDKIKDVAEAYQKTQHAIYVSLLDEFSKDLEKWGAEIDRDTLSVNFTAPE- 78

Query: 234 TPMFDKSSSIPLPETIVVLQKI----GEVL---AHSTEVISIRGHT------DASPFRNI 280
             +F    +    +  ++L        EVL     + + I I GHT      D+S +   
Sbjct: 79  -VLFANGKADLTQQFQIILNDFFPRYLEVLEQYKPTIQEIKIEGHTSSRWNHDSSDY-EA 136

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRI---------SKISGFAHHRLKIAS---DPMN 328
             +N  LS  R  +    +M   + + RI             G++  +  I +   D   
Sbjct: 137 YFNNMGLSQSRTRAVLSYVMA--IDKVRINHYGWVKNNVAAVGYSSSKAVIKNGLEDEKR 194

Query: 329 SANRRIDI-LVEDRQG 343
           S  RR+   ++ + + 
Sbjct: 195 S--RRVSFRVITNAEA 208


>gi|258646396|ref|ZP_05733865.1| OmpA family protein [Dialister invisus DSM 15470]
 gi|260403798|gb|EEW97345.1| OmpA family protein [Dialister invisus DSM 15470]
          Length = 357

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   S  P  +    L    +    +     + G TD++        N  L++ R     
Sbjct: 256 FGNDSDTPRADQTANLDAFVKAAKETGHTFKLVGRTDSN---GSKEYNDDLAIRRVKKVA 312

Query: 297 QVLMKSGVSEDRISKISGF--AHHRLKIASDPMNSA--NRRIDIL 337
              +  GV    +S + G           +D       NRR+DI 
Sbjct: 313 DYAVAHGVD---LSHLVGMYKGEEAPVDTNDTEAGRANNRRVDIF 354


>gi|89053467|ref|YP_508918.1| OmpA/MotB [Jannaschia sp. CCS1]
 gi|88863016|gb|ABD53893.1| OmpA/MotB [Jannaschia sp. CCS1]
          Length = 172

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +  +F    S        VL    + L  + E    I GH D          N  L   R
Sbjct: 62  DRVLFAVDQSTLSSGAQSVLAGQAQWLLSNPEFTALIEGHADEQ---GTREYNLALGARR 118

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR-IDIL 337
           A +  + L+  GV + R+  IS      L+I SD    S NRR + ++
Sbjct: 119 AAAVREYLVSQGVPDARLRTISYGKERPLQICSDEACYSQNRRAVTVI 166


>gi|253572376|ref|ZP_04849779.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|251838151|gb|EES66239.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_6]
          Length = 68

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325
           +S+ G+ D       AR N +LS  RA +  + L   G++ DRI+ ++          + 
Sbjct: 1   MSVTGYADKG--TGNARINSKLSEKRANNVVEALKAKGIAADRIT-VAYKGDTVQPYNT- 56

Query: 326 PMNSANRRIDILV 338
                  R+ I +
Sbjct: 57  ---PEENRVSICI 66


>gi|260467067|ref|ZP_05813247.1| peptidoglycan-associated lipoprotein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029176|gb|EEW30472.1| peptidoglycan-associated lipoprotein [Mesorhizobium opportunistum
           WSM2075]
          Length = 168

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I + GH D    R     N  L   R
Sbjct: 59  DRIFFDTDSSSIRADAQTTLARQAQWLNQYKQYAIVVEGHADE---RGTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L+  GV+  R+  IS +   R     D ++  S NRR
Sbjct: 116 AAAARDFLVSKGVASSRLKTIS-YGKERPVAVCDDISCWSQNRR 158


>gi|56416952|ref|YP_154026.1| hypothetical protein AM854 [Anaplasma marginale str. St. Maries]
 gi|254995132|ref|ZP_05277322.1| hypothetical protein AmarM_03987 [Anaplasma marginale str.
           Mississippi]
 gi|255003301|ref|ZP_05278265.1| hypothetical protein AmarPR_03517 [Anaplasma marginale str. Puerto
           Rico]
 gi|255004426|ref|ZP_05279227.1| hypothetical protein AmarV_03742 [Anaplasma marginale str.
           Virginia]
 gi|56388184|gb|AAV86771.1| hypothetical protein AM854 [Anaplasma marginale str. St. Maries]
 gi|295243859|gb|ADF87315.1| peptidoglycan-associated lipoprotein precursor [Anaplasma
           marginale]
          Length = 236

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIAS- 324
           I GHTD+   R     N  L   RA +  + ++     +S    ++  G A   + + S 
Sbjct: 78  IIGHTDS---RGTEEYNLALGERRANAVKEFILGCDRSLSPRISTQSRGKAEPEVLVYSS 134

Query: 325 -----DPMNSANRRIDILVE 339
                +  ++ NRR+ ++VE
Sbjct: 135 DFKEAEKAHAQNRRVVLIVE 154


>gi|237751470|ref|ZP_04581950.1| lipoprotein [Helicobacter bilis ATCC 43879]
 gi|229372836|gb|EEO23227.1| lipoprotein [Helicobacter bilis ATCC 43879]
          Length = 170

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRL 287
           +D   T  FD        +    ++   + +        + +G+TD          N  L
Sbjct: 61  VDSLTTIYFDFDRYDIRSDMKDYVRANADFIKEKNIKAVVLQGNTDEF---GGDEYNTAL 117

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
            L RA S    L+  G+  +  S IS +  H+           + NRR DI+
Sbjct: 118 GLKRAISVRDALVLQGLPRNMFSTIS-YGMHKPVCREKTAECYAKNRRTDIV 168


>gi|327404085|ref|YP_004344923.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327319593|gb|AEA44085.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 725

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
            +   L  + ++L  +   V+ +  HTD  P  N    N  LS +RA + Y+ L++  GV
Sbjct: 566 NSKDSLIYVYDLLIANPGLVLELSSHTD--PRGNDVY-NQVLSENRAKACYKYLVEEKGV 622

Query: 305 SEDRISKISGFAHHRLK 321
              RI  + G      +
Sbjct: 623 DPRRIIPV-GKGEREPR 638


>gi|13473329|ref|NP_104896.1| peptidoglycan-associated lipoprotein precursor [Mesorhizobium loti
           MAFF303099]
 gi|22653894|sp|Q98F85|OMP16_RHILO RecName: Full=Outer membrane lipoprotein omp16 homolog; Flags:
           Precursor
 gi|14024078|dbj|BAB50682.1| mll3887 [Mesorhizobium loti MAFF303099]
          Length = 168

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  SS    +    L +  + L       I + GH D    R     N  L   R
Sbjct: 59  DRIFFDTDSSSIRADAQTTLARQAQWLNQYKQYAIVVEGHADE---RGTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +A   L+  GV+  R+  IS +   R     D ++  S NRR
Sbjct: 116 AAAARDFLVSKGVASSRLKTIS-YGKERPVAVCDDISCWSQNRR 158


>gi|167950568|ref|ZP_02537642.1| flagellar motor protein MotD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
             S +    +   +RLQ L+  I   L+  V   ++     +     +   ++D +N  +
Sbjct: 35  AESDKAKGGLSEAQRLQYLSAAIGDMLAPYVEAELID---VDYKDGRV---LVDMKNKLL 88

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST 263
           F   S+      + VL+ I +++    
Sbjct: 89  FPSGSAELSRVALKVLRDISKIIGVLP 115


>gi|229069713|ref|ZP_04202999.1| Excalibur domain protein [Bacillus cereus F65185]
 gi|228713453|gb|EEL65342.1| Excalibur domain protein [Bacillus cereus F65185]
          Length = 288

 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI    +    ++  
Sbjct: 68  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALLGISAPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K +D
Sbjct: 128 KVASNNEEPKDSEQKKELEKKEADEKTQKQEDEKRLAEEQARKQEDEKRQADEQARKQED 187

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +  D +    +EE          K    ++++  + 
Sbjct: 188 EKRQADEQARKQQEEQKRQADEQARKQQEEQKRQADEQ 225


>gi|224023985|ref|ZP_03642351.1| hypothetical protein BACCOPRO_00702 [Bacteroides coprophilus DSM
           18228]
 gi|224017207|gb|EEF75219.1| hypothetical protein BACCOPRO_00702 [Bacteroides coprophilus DSM
           18228]
          Length = 356

 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
           D       +E    P  S E     ++   ++   + + + L      +  K V+ E  R
Sbjct: 193 DNISKGKSKEAAAKPVNSAEIDRMNQQINDMRAQIEGLQNELEKSKVVDARKKVVLEPMR 252

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281
               ++I        FD        +    L  IG  +      IS+    D+     + 
Sbjct: 253 EMPAVNIQ-------FDTMGDYLNEQEAAKLDDIGVWMQDHPNSISVVPFADSQADVALE 305

Query: 282 RDNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310
           +    L   R  +  +VL  K G+   RI 
Sbjct: 306 K---ELKQKRVDAITKVLTEKYGIDRKRIL 332


>gi|294786072|ref|ZP_06751357.1| outer membrane protein [Fusobacterium sp. 3_1_27]
 gi|294486294|gb|EFG33659.1| outer membrane protein [Fusobacterium sp. 3_1_27]
          Length = 70

 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 1   RRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 55


>gi|163795658|ref|ZP_02189623.1| OmpA/MotB [alpha proteobacterium BAL199]
 gi|159178954|gb|EDP63489.1| OmpA/MotB [alpha proteobacterium BAL199]
          Length = 285

 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 63/231 (27%), Gaps = 6/231 (2%)

Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170
           ++   G       +                E     +   ++ G    +   +E      
Sbjct: 56  MEFAEGDYMDSDTFAARAIASANGKPPAPEELASRDIPAAAQGGLAEARRKLMEALDGGA 115

Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230
                   ++ +       +  ++  +           D  +  +           SI  
Sbjct: 116 RTAKPDAAARAQASFDCWMQEQEENFQPADIKWCKDRFDAAMAQLGTPAPAAAPKPSITF 175

Query: 231 QRNTPMFDKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
              T  FD   S    +T   ++         +   I + G+ D          N  LS 
Sbjct: 176 ANFTVYFDFDKSTLTAQTQSTLIDAANAADDMAATNIEVSGYADR---SGSEAYNMALSQ 232

Query: 290 DRAYSAYQVLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338
            RA +  + L    G     + +++ G + +++        + NRR+ I +
Sbjct: 233 RRADAVAKELTTLIGAKAPAMKRLAFGESQNKVVTPDGVKEAKNRRVKIEI 283


>gi|237716074|ref|ZP_04546555.1| outer membrane porin F [Bacteroides sp. D1]
 gi|262407686|ref|ZP_06084234.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643794|ref|ZP_06721592.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294808454|ref|ZP_06767207.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298480834|ref|ZP_06999029.1| outer membrane porin F [Bacteroides sp. D22]
 gi|229443721|gb|EEO49512.1| outer membrane porin F [Bacteroides sp. D1]
 gi|262354494|gb|EEZ03586.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640883|gb|EFF59103.1| OmpA family protein [Bacteroides ovatus SD CC 2a]
 gi|294444382|gb|EFG13096.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085223|emb|CBK66746.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Bacteroides xylanisolvens XB1A]
 gi|298272857|gb|EFI14423.1| outer membrane porin F [Bacteroides sp. D22]
          Length = 379

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   S       + ++ + + +  + +V ++ G+ D       A  N +LS  RA +  
Sbjct: 282 FNIGKSNISKREYMNIEAMAKGIKATDKVFTVTGYADKG--TGSAEYNMKLSKKRAEAVR 339

Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            +++   GV   ++ K+            D   S   R+ I+
Sbjct: 340 DLMVNEFGVPASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 377


>gi|228907904|ref|ZP_04071756.1| Excalibur domain protein [Bacillus thuringiensis IBL 200]
 gi|228851799|gb|EEM96601.1| Excalibur domain protein [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 58/178 (32%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A  GI    +    ++  
Sbjct: 68  FAILSFILFIFFLVLAILSVIKKTGVSKKQFIITAVLFVIFVALLGISAPSSEKTTATST 127

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  + +E                +K  ++ +        +++ E  K      + K ++
Sbjct: 128 KVASNNEEQKDSEKKKELEKKEADEKTQKQEDEKRQAEEQARKQEDEKRQADEQARKQQE 187

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
             K    E+   +++        + +    ++K++  + A+K          +   K 
Sbjct: 188 EQKRLADEQVRKQQDEQKRQADEQARKQQDEQKRQADEQARKQQDEQKRQADEQARKQ 245


>gi|326560563|gb|EGE10944.1| hypothetical protein E9K_09484 [Moraxella catarrhalis 103P14B1]
 gi|326561436|gb|EGE11786.1| hypothetical protein E9M_06283 [Moraxella catarrhalis 46P47B1]
 gi|326565609|gb|EGE15772.1| hypothetical protein E9O_03254 [Moraxella catarrhalis 12P80B1]
 gi|326568444|gb|EGE18524.1| hypothetical protein E9S_08729 [Moraxella catarrhalis BC7]
 gi|326572334|gb|EGE22329.1| hypothetical protein E9U_01141 [Moraxella catarrhalis BC8]
 gi|326573946|gb|EGE23896.1| hypothetical protein EA1_07870 [Moraxella catarrhalis O35E]
 gi|326574936|gb|EGE24866.1| hypothetical protein E9Y_04486 [Moraxella catarrhalis 101P30B1]
 gi|326576264|gb|EGE26179.1| hypothetical protein E9W_01405 [Moraxella catarrhalis CO72]
          Length = 204

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +  +  QD  ++I   L    AD++ K    +  +  + IS +      +F    S    
Sbjct: 17  QIAEEYQDTQEQIYKALLHEFADDLPKW-GAKIDKDTLTISFLSPD--ILFKTGQSDLQD 73

Query: 247 ETIVVLQKI----GEVL---AHSTEVISIRGHTDASPFRNIARD-----NWRLSLDRAYS 294
               +L        +V+     S   I I GHT +     +  D     N RLS DR   
Sbjct: 74  NYKEILSDFFPRYIKVIDRYKDSINEIRIEGHTSSEWAAGVDADIAYFENMRLSQDR--- 130

Query: 295 AYQVLM 300
              VL 
Sbjct: 131 TRTVLQ 136


>gi|19352400|ref|NP_598158.1| hypothetical protein pB4p61 [uncultured bacterium]
 gi|19070067|emb|CAD24383.1| Upf30.5 protein [uncultured bacterium]
          Length = 147

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P+         E+LA +    +I I G T        +  +  L+L RA S
Sbjct: 45  FPDSSTTFRPDAST-----AELLAEAKGAAIIYISGRTSTL---RASASDEALALRRALS 96

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDILV 338
           A Q L+  GVS  +I      A   +   S P     N+R+DI V
Sbjct: 97  ARQYLIARGVSPLKIMVNFASASDFVADNSTPEGRYQNQRVDIEV 141


>gi|332882793|ref|ZP_08450404.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679295|gb|EGJ52281.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 415

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDN 284
            I+      +F+  SS+   E   ++Q+       + + ++  I  +T          +N
Sbjct: 307 QIVIPSVGVLFELGSSVVSEEGRKLIQEFASAYLQTNKEVTVLIESYTCDI---GTDENN 363

Query: 285 WRLSLDRAYSAYQVLMKSGV 304
             LS DRA     VL   GV
Sbjct: 364 MTLSNDRANVIKAVLENMGV 383


>gi|163739583|ref|ZP_02146992.1| Outer membrane protein, OmpA/MotB family [Phaeobacter gallaeciensis
           BS107]
 gi|161387042|gb|EDQ11402.1| putative outer membrane protein [Phaeobacter gallaeciensis BS107]
          Length = 624

 Score = 41.4 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           F+  S++        L  +G  L         EV  I GHTDA      A  N  LS  R
Sbjct: 512 FETGSAVIRAAEAEELAALGNALRDMIAQNPQEVFLIEGHTDAV---GAAPFNLGLSDRR 568

Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324
           A S    L +   V  + +  + G+    L + +
Sbjct: 569 AESVALALTEYFKVPPENMV-VQGYGETDLAVVT 601


>gi|293373639|ref|ZP_06619986.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
 gi|292631294|gb|EFF49925.1| OmpA family protein [Bacteroides ovatus SD CMC 3f]
          Length = 438

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F  +S   + E+ +V L  I E+       ++I G  D++        N  L   RA  
Sbjct: 340 FFQLNSDRLVDESQIVNLDDIAEISKAHNLKVTISGAADSA--TGTQSINQELGQRRARY 397

Query: 295 AYQVLMKSGVSEDRIS 310
             Q L+  GV E  I 
Sbjct: 398 VAQKLIDRGVPEGLIH 413


>gi|39997270|ref|NP_953221.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39984160|gb|AAR35548.1| OmpA domain protein, putative [Geobacter sulfurreducens PCA]
          Length = 199

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 12/148 (8%)

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
           LA ++S  +       +    +  +T   I   I  Q  +  FD  S        +    
Sbjct: 62  LAMRLSDPVKPEPQLALETKPVQSSTHGAIETEI--QLTSVQFDFDSEQLSRHERLRFDG 119

Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314
           +   L     +  ++G+T           N RLS+ RA     ++  +G +   +  + G
Sbjct: 120 LLAGLTKQ-GMFGLKGYTCT--IGTDDY-NERLSIRRANHVAGIMKSNGFN---VVTVEG 172

Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342
                           NRR++I+   ++
Sbjct: 173 KGKCCPVSTD---KRLNRRVEIVEHRKE 197


>gi|91777208|ref|YP_552416.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans
           LB400]
 gi|91689868|gb|ABE33066.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans
           LB400]
          Length = 359

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+    +  LP     L  +   L ++     + I G+ D          N  LS+ RA 
Sbjct: 247 FNGGDEAAMLPAGKRQLDDVATGLNNAPALHELKITGYADRL---GDKSYNLGLSMQRAR 303

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI-----ASDPM---NSANRRIDI 336
           +  + L   GVS        G       +       D +    + NRR++I
Sbjct: 304 TVERYLRAHGVSVP--ITAQGRGSANPLVDCRRTKRDALVKCLAPNRRVEI 352


>gi|154149070|ref|YP_001406274.1| Omp18 [Campylobacter hominis ATCC BAA-381]
 gi|153805079|gb|ABS52086.1| Omp18 [Campylobacter hominis ATCC BAA-381]
          Length = 154

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IA 323
           + I G+ D          N+ L L RA +A   L+K GV+E+R+S +S +    L     
Sbjct: 82  VKIEGNCDEW---GTDEYNYALGLKRATAAKDALVKQGVAENRLSVVS-YGESNLVCTDK 137

Query: 324 SDPMNSANRR 333
           +   ++ NRR
Sbjct: 138 TKACDAQNRR 147


>gi|330719881|gb|EGG98362.1| hypothetical protein imdm_109 [gamma proteobacterium IMCC2047]
          Length = 234

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +S       + +  +  +L    + ++ + G+ D    R  A  N  LS  R    
Sbjct: 117 FKTGASELTLPAQLKMSLLASLLLEQPKLMVRLDGYADP---RGDANYNQTLSAKRVQVV 173

Query: 296 YQVLMKSGVSEDRI 309
            + L+  GV+ +R 
Sbjct: 174 QEFLITKGVAPERF 187


>gi|119510179|ref|ZP_01629317.1| hypothetical protein N9414_10353 [Nodularia spumigena CCY9414]
 gi|119465129|gb|EAW46028.1| hypothetical protein N9414_10353 [Nodularia spumigena CCY9414]
          Length = 244

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 37/137 (27%)

Query: 237 FDKSSSI-PLPETIVVLQKIGEVLAHST-----EVISIRGHTDASPFRNIAR-------- 282
           F   S+  P   +  + ++I   +   T      V+ I GHTD  P  N+A         
Sbjct: 96  FASGSADIPEKMSTYIFRQIVPEIEARTKQYGINVVEIIGHTDGQPNGNVASNLDVNLEK 155

Query: 283 --------------DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDP 326
                          N  L L RA S  +VL      E R+S +S   ++  +L + +  
Sbjct: 156 VVGGSLPVGKLQAGSNADLGLMRALSVVKVLHDIQKKEGRLSGLSFRAYSAAQLILPNGQ 215

Query: 327 MNSA-------NRRIDI 336
             S         RRI+I
Sbjct: 216 FASIARKEDVTRRRIEI 232


>gi|254785203|ref|YP_003072631.1| hypothetical protein TERTU_1036 [Teredinibacter turnerae T7901]
 gi|237686899|gb|ACR14163.1| conserved hypothetical OmpA family protein [Teredinibacter turnerae
           T7901]
          Length = 238

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F         +    +Q +   +  +    + + G  D  P      +N  LS +RA S 
Sbjct: 126 FPTGEDALSHQDSQRIQSLANYMTDNPSLRVRLDGFAD--PRGTDEYNN-VLSEERARSV 182

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANR--RIDI 336
              L+  G+   RI  +  G +            +  R  RI++
Sbjct: 183 VDALVARGIDSRRIEYQAHGASMSMATAGDKDAYALERKVRIEV 226


>gi|295677467|ref|YP_003605991.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
 gi|295437310|gb|ADG16480.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002]
          Length = 340

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 232 RNTPMFD---KSSSIPLPETIVVLQKIGE-VLAHST--EVISIRGHTDASPFRNIARDNW 285
           +   +F      S     +    + ++ E +LA +   E +++ GH D            
Sbjct: 218 KGDTLFAFGKSGSRDMTGKGQAEISRLAEKILAENASLEAVTVIGHAD---LIGSDAAAQ 274

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSA------NRRIDILV 338
           +L   RA +  ++L++ GV   +I+   +G +   +   S  M         NRR+ + V
Sbjct: 275 KLGEQRAMTVRRMLIEQGVPTLKITAESAGNSDPVVAECSGTMQRKIACNEPNRRVVVRV 334


>gi|299142777|ref|ZP_07035906.1| major outer membrane protein OmpA [Prevotella oris C735]
 gi|298575806|gb|EFI47683.1| major outer membrane protein OmpA [Prevotella oris C735]
          Length = 389

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           + K      P ++  K L+  +   L       ++    L      K      T++  + 
Sbjct: 224 LGKATWNKTPDVAAIKALSQSQIDALNSQLNDANAENDKLRKQLAEKPKTTVLTKS--VK 281

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS------IRGHTDASPFRNI 280
             I    +  F+            +L+ +  V A +   I+      + G+ D+S     
Sbjct: 282 EFITTPISVFFNIGKINV-----ALLKDLVNVRALAKYAIANKSNILVTGYADSS--TGT 334

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISG 314
              N RLS  RA +  + L+K GV   +I +  SG
Sbjct: 335 PAINQRLSEQRANTVLEELVKMGVDRSKIRTAASG 369


>gi|294784302|ref|ZP_06749596.1| outer membrane protein [Fusobacterium sp. 3_1_27]
 gi|294488058|gb|EFG35410.1| outer membrane protein [Fusobacterium sp. 3_1_27]
          Length = 71

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342
            RA S    L++ G+SEDRI  I      +    +      + NRR++  +  R+
Sbjct: 2   RRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 56


>gi|281423980|ref|ZP_06254893.1| putative immunoreactive antigen PG33 [Prevotella oris F0302]
 gi|281401905|gb|EFB32736.1| putative immunoreactive antigen PG33 [Prevotella oris F0302]
          Length = 389

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           + K      P ++  K L+  +   L       ++    L      K      T++  + 
Sbjct: 224 LGKATWNKTPDVAAIKALSQSQIDALNSQLNDANAENDKLRKQLAEKPKTTVLTKS--VK 281

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS------IRGHTDASPFRNI 280
             I    +  F+            +L+ +  V A +   I+      + G+ D+S     
Sbjct: 282 EFITTPISVFFNIGKINV-----ALLKDLVNVRALAKYAIANKSNILVTGYADSS--TGT 334

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISG 314
              N RLS  RA +  + L+K GV   +I +  SG
Sbjct: 335 PAINQRLSEQRANTVLEELVKMGVDRSKIRTAASG 369


>gi|256425936|ref|YP_003126589.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040844|gb|ACU64388.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588]
          Length = 514

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F  SS+    +   +L  +   L  +    I + GH  A   +        LS  R  + 
Sbjct: 426 FKGSSTKVASDNEAILASVAATLKGAPSCNILVTGHAGAKGKKGGV----DLSSRRVDAV 481

Query: 296 YQVLMK-SGVSEDRISK 311
              L    G+   R  K
Sbjct: 482 IDYLADKQGIDRGRFIK 498


>gi|259907265|ref|YP_002647621.1| Outer membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224962887|emb|CAX54368.1| Outer membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283477078|emb|CAY72976.1| Uncharacterized 24.6 kDa protein in ccpA 3'region; ORF2 [Erwinia
          pyrifoliae DSM 12163]
          Length = 245

 Score = 41.0 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
                      W I YAD MT +M  FLV+ + + +    +    +
Sbjct: 9  KKRRSDEAEKPFW-ISYADLMTAMMVLFLVVMVASLSSVTQRIQRAE 54


>gi|310765241|gb|ADP10191.1| Outer membrane protein [Erwinia sp. Ejp617]
          Length = 245

 Score = 41.0 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
                      W I YAD MT +M  FLV+ + + +    +    +
Sbjct: 9  KKRRSDEAEKPFW-ISYADLMTAMMVLFLVVMVASLSSVTQRIQRAE 54


>gi|327405902|ref|YP_004346740.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM
           16823]
 gi|327321410|gb|AEA45902.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823]
          Length = 238

 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
               +   + +   H      I  ++D+         N +LS DRA      L+     +
Sbjct: 146 FYQEIDDLVNQYFNHKGSSFKINAYSDS---HGSEESNLKLSKDRAKFIRNYLINEKKVD 202

Query: 307 DRISKISGFAH-HRLKIASDPMNSANRRIDILV 338
            R  +  G     + +I    ++  NRR  I++
Sbjct: 203 ARDIQTEGKGSKSKERITEPDLDFMNRRAVIIL 235


>gi|124009145|ref|ZP_01693827.1| lipoprotein, putative [Microscilla marina ATCC 23134]
 gi|123985243|gb|EAY25170.1| lipoprotein, putative [Microscilla marina ATCC 23134]
          Length = 294

 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 28/129 (21%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH---------STEVISIRGHTDASPFRNIAR 282
           ++  +F+  S+      +V L +  +   H             ++I G+ D   F     
Sbjct: 133 KSDVLFEVGSAQLRAAGVVSLNQFAQYFKHKVLTVYRAQMQVKLNITGYADEQGFVKGES 192

Query: 283 D------NWRLSLDRAYSAYQVL-----MKSGVSEDRIS---KISGFAHHRLKIASDPMN 328
           D      N  LSL+RA +  Q L      K   ++  +       G          +P  
Sbjct: 193 DQQRKEKNRLLSLNRATAIKQYLSIVLNQKFANADKEVMLDINAEGKGEQLPPKLRNP-- 250

Query: 329 SAN---RRI 334
             N   RR+
Sbjct: 251 QQNDHRRRV 259


>gi|29346921|ref|NP_810424.1| outer membrane protein OmpA [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572383|ref|ZP_04849786.1| outer membrane protein OmpA [Bacteroides sp. 1_1_6]
 gi|29338819|gb|AAO76618.1| outer membrane protein OmpA [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838158|gb|EES66246.1| outer membrane protein OmpA [Bacteroides sp. 1_1_6]
          Length = 364

 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290
           +    F  +S++   + +  +  + + +  +    +++ G+ D        + N  LS  
Sbjct: 262 KQNIFFALNSALLQNDQLAKIDAMIKYMEKNPTSKVAVTGYADKE--TGNPKINMTLSEK 319

Query: 291 RAYSAYQVLMKSGVSEDRI 309
           RA +  + L   G++ DRI
Sbjct: 320 RAKNVVEALKAKGIAADRI 338


>gi|156977422|ref|YP_001448328.1| hypothetical protein VIBHAR_06209 [Vibrio harveyi ATCC BAA-1116]
 gi|156529016|gb|ABU74101.1| hypothetical protein VIBHAR_06209 [Vibrio harveyi ATCC BAA-1116]
          Length = 1585

 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA-------KKISSTLSGLVADNI 211
            + + ++  +K  +           L    ++ L  +A       K+   T +  V   +
Sbjct: 568 SAMETKEQYDKHIDALEDADQAHGSLKAYAQQYLSAIAYLRRSDEKERWETKATEVQGFL 627

Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270
                  T   G+++ I  + N+  F+            + +K+  +L  +    I++ G
Sbjct: 628 GNEAKIYTDAMGVVVRINFKFNSAEFENEVKALNSNYEELCKKLRNLLVENPDYQIALIG 687

Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-------SKISGFAHHRLK-- 321
           H    P  +  + N  +S  R  +    ++     ++RI       ++  G A    K  
Sbjct: 688 H--GGPISSQEK-NLIVSQRRIDTIKDRILNGTQGDERIKLERRLVTQAKGKAELLPKEG 744

Query: 322 ------IASDPMN-SANRRIDI 336
                   SD  + + NRR+++
Sbjct: 745 GYHDHGDRSDTADIAINRRVEV 766


>gi|296113886|ref|YP_003627824.1| hypothetical protein MCR_1674 [Moraxella catarrhalis RH4]
 gi|295921580|gb|ADG61931.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
          Length = 228

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
           +  +  QD  ++I   L    AD++ K    +  +  + IS +      +F    S    
Sbjct: 41  QIAEEYQDTQEQIYKALLHEFADDLPKW-GAKIDKDTLTISFLSPD--ILFKTGQSDLQD 97

Query: 247 ETIVVLQKI----GEVL---AHSTEVISIRGHTDASPFRNIARD-----NWRLSLDRAYS 294
               +L        +V+     S   I I GHT +     +  D     N RLS DR   
Sbjct: 98  NYKEILSDFFPRYIKVIDRYKDSINEIRIEGHTSSEWAAGVDADIAYFENMRLSQDR--- 154

Query: 295 AYQVLM 300
              VL 
Sbjct: 155 TRTVLQ 160


>gi|281424046|ref|ZP_06254959.1| putative immunoreactive antigen PG32 [Prevotella oris F0302]
 gi|281401829|gb|EFB32660.1| putative immunoreactive antigen PG32 [Prevotella oris F0302]
          Length = 356

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           KI+  + +  +  L  +IS   S L      I+K V+ E      ++          F +
Sbjct: 220 KIVTPRDQNEIDALNSQISDLRSELAKKPKEIIKEVVKEVPGAATVV----NPLFVTFAQ 275

Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
             S    E   VL  + +        + I G   +SP    +  N RLS +RA      L
Sbjct: 276 GKSTLTSEAKSVLDNVAK-----GSTVQIVG--TSSP-EGSSSLNKRLSQNRANVVANYL 327

Query: 300 MKSGVSEDR 308
              GV+ ++
Sbjct: 328 KNKGVNVEK 336


>gi|109900289|ref|YP_663544.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
 gi|109702570|gb|ABG42490.1| OmpA/MotB [Pseudoalteromonas atlantica T6c]
          Length = 585

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI---------SIRGHTDASPFRNIARDNWRL 287
           F  +SS   PE    +  + E+      +           + G +DA         N  L
Sbjct: 475 FAINSSQLTPEAKDGISTVAEIGKTLLNLAKQTEQEMSFIVIGASDAQ---GSRSYNEVL 531

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKIS 313
           S+ RA +    L   G+  D+++ I 
Sbjct: 532 SIKRAQTVKNALQMRGIPADKLNAIG 557


>gi|226362179|ref|YP_002779957.1| hypothetical protein ROP_27650 [Rhodococcus opacus B4]
 gi|226240664|dbj|BAH51012.1| putative monooxygenase [Rhodococcus opacus B4]
          Length = 516

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 25/122 (20%)

Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-------LAHSTEVIS 267
           +  E  R G+ + I+D+   P            +  V+  +G V         H    ++
Sbjct: 18  LALELARRGVEVRILDKSPEPFPGSRGKGLTARSQEVMDDLGIVDEIVDAGFRHLPSRVA 77

Query: 268 IRG--------HTDASPFRNIARDN------WRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           +RG        H D SP  +   D+      W+   +R     + L + G+  +R  ++ 
Sbjct: 78  VRGQVVSDGDPHADLSPTPDRPYDSGLMIPQWQ--TER--ILRERLSEFGIDVERGVEVV 133

Query: 314 GF 315
           GF
Sbjct: 134 GF 135


>gi|322514054|ref|ZP_08067125.1| lipoprotein PlpD [Actinobacillus ureae ATCC 25976]
 gi|322120071|gb|EFX92042.1| lipoprotein PlpD [Actinobacillus ureae ATCC 25976]
          Length = 106

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP 326
           + G+TD        + N  LS  RA      L++ GV   +I+ +  G A        + 
Sbjct: 1   MAGYTDRL---GSEKYNLDLSQRRANMVKSRLVQQGVI-VQINAVGYGKASQVKACDGES 56

Query: 327 MNSA------NRRIDI 336
             +       NRR++I
Sbjct: 57  GQALRDCLRPNRRVEI 72


>gi|307728349|ref|YP_003905573.1| cytochrome c oxidase subunit II [Burkholderia sp. CCGE1003]
 gi|307582884|gb|ADN56282.1| cytochrome c oxidase, subunit II [Burkholderia sp. CCGE1003]
          Length = 552

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TDA+     A  N +L+  RA + 
Sbjct: 452 FDTGKSTLPADAKAAVEAAAAYAKAHPDAKFTLSGFTDAT---GSADTNAKLAKSRAEAV 508

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G +  +            RR+ I
Sbjct: 509 RDALKAAGIAEDHIILKKPETITGGSDAKEA----------RRVQI 544


>gi|188994592|ref|YP_001928844.1| outer membrane protein 40 precursor [Porphyromonas gingivalis ATCC
           33277]
 gi|53828383|dbj|BAD54750.1| hypothetical protein [Porphyromonas gingivalis]
 gi|188594272|dbj|BAG33247.1| outer membrane protein 40 precursor [Porphyromonas gingivalis ATCC
           33277]
          Length = 380

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +S+       + +    E    +   I + G+ D       A  N +LS  RA +  
Sbjct: 283 FRINSAKIDRNQEINVYNTAEYAKTNNAPIKVVGYADEK--TGTAAYNMKLSERRAKAVA 340

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++L K GVS DRI+ I            +   + NR   I+V  
Sbjct: 341 KMLEKYGVSADRIT-IEWKGSSEQIYEEN---AWNR---IVVMT 377


>gi|34540489|ref|NP_904968.1| immunoreactive 42 kDa antigen PG33 [Porphyromonas gingivalis W83]
 gi|27805653|sp|Q9S3R8|OMP40_PORGI RecName: Full=Outer membrane protein 40; Short=Omp40; AltName:
           Full=PG33; Flags: Precursor
 gi|5759279|gb|AAD51068.1|AF175715_1 immunoreactive 42kD antigen PG33 [Porphyromonas gingivalis]
 gi|34396802|gb|AAQ65867.1| immunoreactive 42 kDa antigen PG33 [Porphyromonas gingivalis W83]
          Length = 380

 Score = 41.0 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +S+       + +    E    +   I + G+ D       A  N +LS  RA +  
Sbjct: 283 FRINSAKIDRNQEINVYNTAEYAKTNNAPIKVVGYADEK--TGTAAYNMKLSERRAKAVA 340

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++L K GVS DRI+ I            +   + NR   I+V  
Sbjct: 341 KMLEKYGVSADRIT-IEWKGSSEQIYEEN---AWNR---IVVMT 377


>gi|285017850|ref|YP_003375561.1| non-ribosomal peptide synthetase [Xanthomonas albilineans GPE PC73]
 gi|283473068|emb|CBA15573.1| probable non-ribosomal peptide synthetase protein [Xanthomonas
            albilineans]
          Length = 4562

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 135  SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             N+ + +    +LT ++  G       DLE S+ + ++  +  L      A+  + R+Q 
Sbjct: 1408 QNASEGQLTLPALTVETLPGTHRAAQFDLELSMQESDDGIVGSLVF--ATALFTRARIQR 1465

Query: 195  LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254
              +++ + L+ + AD+               I   +      F+ +++        +   
Sbjct: 1466 HVRQLLTLLARMSADDNAAVSTLSA------IEPQELAQLHSFNATTADLDGSGF-LHHA 1518

Query: 255  IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            I      + + I++   T A  +  +          RA      L+  GV  +RI  +
Sbjct: 1519 IAAQARRTPQAIAVVAQTQAIHYAELD--------ARANQLAHHLIGLGVVPERIVAV 1568


>gi|206972147|ref|ZP_03233095.1| excalibur domain protein [Bacillus cereus AH1134]
 gi|206733070|gb|EDZ50244.1| excalibur domain protein [Bacillus cereus AH1134]
          Length = 302

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 66/178 (37%), Gaps = 3/178 (1%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           ++    +L  FFLV+ I++          +         +  A  GI    +    ++  
Sbjct: 66  FSTLSFILFIFFLVLAILSVIKKTGVAKKQFIITAVLFVIFVALLGISAPSSEKTTATST 125

Query: 97  KIDLSIDEHI-TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
           K+  + +E   ++   +L+    ++K Q Q  E  +      +Q +  + +  +  ++ +
Sbjct: 126 KVASNNEEPKDSEQKKELEKKEADEKTQKQEDEKRLAEEQARKQEDEKRLADEQARKQQE 185

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           +  +  D +    +EE   L      K    + +KRL D   +        +AD   +
Sbjct: 186 EQKRLADEQARKQQEEQKRLADEQARK--QQEEQKRLADEQARKQQEEQKRLADEQAR 241


>gi|160889612|ref|ZP_02070615.1| hypothetical protein BACUNI_02038 [Bacteroides uniformis ATCC 8492]
 gi|156860604|gb|EDO54035.1| hypothetical protein BACUNI_02038 [Bacteroides uniformis ATCC 8492]
          Length = 197

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253
           +LA+  +   +   A    K  + E T+       +       F   S+       V ++
Sbjct: 93  ELAQAQADLANCKNALANAKPEVKEVTKE----VEVAGPRAIFFKIGSARLDDYGKVNIE 148

Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303
              ++L  + +    + G+ D +     A  N +LS  RA   Y  L+  G
Sbjct: 149 LAAKILKANPDKKYKVAGYADKA--TGSASWNQKLSEKRAQVVYDALIAQG 197


>gi|254486102|ref|ZP_05099307.1| conserved hypothetical protein [Roseobacter sp. GAI101]
 gi|214042971|gb|EEB83609.1| conserved hypothetical protein [Roseobacter sp. GAI101]
          Length = 66

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 279 NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NR 332
           +   DNW+L   RA S  + ++   G++ DR++   GF  +      D  ++   NR
Sbjct: 2   DAFADNWKLIQARALSVVKYMINFLGIAPDRLAA-KGFGRYHPVPEGDSESARAHNR 57


>gi|163733012|ref|ZP_02140456.1| OmpA domain protein [Roseobacter litoralis Och 149]
 gi|161393547|gb|EDQ17872.1| OmpA domain protein [Roseobacter litoralis Och 149]
          Length = 519

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+    ++   + ++   L         +   G +D       A  N  ++L RA 
Sbjct: 412 FEAGSARLDAQSRSNVVQLAHDLEQGRFDARQMIFVGFSDGQ---GSAEANMEIALSRAN 468

Query: 294 SAYQVLMKSGVSEDRI---SKISGFAHHRLKIASDP--MNSANRRIDILV 338
           S    +     + D +    ++  F         D      ANRR+++ V
Sbjct: 469 SVADAVRTKAETADLMQIDMQVDAFGEAMPLACDDSVWGRQANRRVEVWV 518


>gi|113475382|ref|YP_721443.1| hypothetical protein Tery_1705 [Trichodesmium erythraeum IMS101]
 gi|110166430|gb|ABG50970.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 263

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 82/237 (34%), Gaps = 37/237 (15%)

Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173
           K G  N        E  +  + N +  +  K       EK + + +     K  N+E + 
Sbjct: 41  KSGVVNSDISRVNTELKLVKIENKKLQDKVKEKDKEIQEKSEKIKQQEKTIKRKNEEISS 100

Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISII--- 229
                  E      RK      + ++S  L   + +N+VK +  +   + G ++ +I   
Sbjct: 101 LTSQPPIEITEVSNRK--FPSGSAELSDGLVNFIENNLVKQIENYAQGKEGYIVQVIGHT 158

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289
           D +    F  S+          L  + E +A     I+I   T +         N  L L
Sbjct: 159 DGQKNNRFQVSN----------LDNLLEEVARVNNNINISNLTPS--------SNADLGL 200

Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS----------DPMNSANRRIDI 336
            RA +  + L K+   +    K   ++  +L + S          DP     RRI+I
Sbjct: 201 MRALAVVKELEKNPRLKQLELKFRAYSAAQLYLPSGEYAGVQRYPDPQR---RRIEI 254


>gi|281423558|ref|ZP_06254471.1| putative peptidoglycan-associated lipoprotein [Prevotella oris
           F0302]
 gi|281402378|gb|EFB33209.1| putative peptidoglycan-associated lipoprotein [Prevotella oris
           F0302]
          Length = 425

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228
           +     +P +    +   +++    ++ K           +  V  V      +   ++ 
Sbjct: 265 QPSEPNMPEVDDLHVQPERKEDNEPEMTKVTEQIEQSKTTERSVSEVSVAAAES---VAT 321

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           +D   T  F  +S+    +    +Q+I  +L  + +  I + G  D          N RL
Sbjct: 322 VDFP-TVYFAFNSARISSKEETKMQQILHLLQDNPKLNIIVTGWCDTV---GSDAVNLRL 377

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333
           S+ RA +    L   G++  RI K +G      +  ++   +  RR
Sbjct: 378 SVRRAKALKTWLTTRGINAVRI-KTAGKG----RDFNEKNAAKARR 418


>gi|162454093|ref|YP_001616460.1| hypothetical protein sce5817 [Sorangium cellulosum 'So ce 56']
 gi|161164675|emb|CAN95980.1| hypothetical protein sce5817 [Sorangium cellulosum 'So ce 56']
          Length = 592

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 13/97 (13%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVL---------AHSTEVISIRGHTDASPFRNIARDNWR 286
            F + ++    E    L ++             AH T  I   G+ D          N  
Sbjct: 464 FFRRGAARLSGEQAARLDEVAAAAERLIARAREAHMTAEIRDIGYADPV---GSEASNRA 520

Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           LS  RA      L+  G+  D + + SG    R  + 
Sbjct: 521 LSQARAEHVAAELVARGIPAD-LLRASGGGTRREVVP 556


>gi|161505468|ref|YP_001572580.1| hypothetical protein SARI_03626 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866815|gb|ABX23438.1| hypothetical protein SARI_03626 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 275

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320
           IS+ G+ D        + N +LS  RA    + L+  G  ED+I    G      
Sbjct: 191 ISVYGYADRQ---GTHQHNMKLSALRAEYVKKYLVSKGFPEDKIFA-KGMGEAVP 241


>gi|317504755|ref|ZP_07962715.1| major outer membrane protein OmpA [Prevotella salivae DSM 15606]
 gi|315664137|gb|EFV03844.1| major outer membrane protein OmpA [Prevotella salivae DSM 15606]
          Length = 390

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 18/137 (13%)

Query: 183 ILAMKRKKRLQDLAKKISST------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            L    + ++ DL  KI +       L   +A+   + V  ++ +      ++    +  
Sbjct: 238 ALKAMTQSQIDDLNNKIKNASDEGDRLRKELAEAPKEDVQSKSIKE-----LVATPISVF 292

Query: 237 FDKSSSIPLPETIVVL--QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293
           F+ + +        ++  + + +    +   + + G+ D+          N +LS  RA 
Sbjct: 293 FNINKTELA-RLKDLVNVRALAKYAVENNNRVLVTGYADS---ATGTPSINQKLSEGRAN 348

Query: 294 SAYQVLMKSGVSEDRIS 310
           +    L+K G+    IS
Sbjct: 349 TLVNELVKMGIKRSNIS 365


>gi|114762079|ref|ZP_01441547.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114545103|gb|EAU48106.1| OmpA domain protein [Roseovarius sp. HTCC2601]
          Length = 517

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 61/175 (34%), Gaps = 23/175 (13%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-ISIIDQRNTPM- 236
           S    + ++R   +  + ++I+    G   D +   ++      G+  +  +     PM 
Sbjct: 346 SAPAQIVIRRAGFVDQMPEEIALAQQG---DRLANAIIVAEGDQGLTGLQRLVATLAPMR 402

Query: 237 -------FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWR 286
                  F+   +    ++   +Q++   L         +   G +DA      A  N  
Sbjct: 403 RLTTSFRFEAGETGLDAQSRSNVQQLARALEAGEYDGRELVFVGFSDAQ---GPAEANLE 459

Query: 287 LSLDRAYSAYQVLMKSGVSED--RI-SKISGFAHHRLKIASDP--MNSANRRIDI 336
           ++ +RA +    ++ +  + D  R+   +  F         D       NRR+++
Sbjct: 460 IAYERAEAVRAAVLNAAEAADLRRLELGVEAFGEAMPMACDDTVWGRQVNRRVEV 514


>gi|198275754|ref|ZP_03208285.1| hypothetical protein BACPLE_01929 [Bacteroides plebeius DSM 17135]
 gi|198271383|gb|EDY95653.1| hypothetical protein BACPLE_01929 [Bacteroides plebeius DSM 17135]
          Length = 354

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMF 237
           S  + +++    R+ D    +   +  L  + +    + +T R  IL  I    + T +F
Sbjct: 201 SNTQKISVSELNRMNDQINLMRKQICNL-QEELNNAQIIKTNREVILEPIRQSPSVTILF 259

Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           D   S      +  L+ IG  +   +  I+I    D+    + A+   R+ + R  +  +
Sbjct: 260 DTMGSFLNASELEKLEDIGIWMQDHSNSITIVAFADSQAKDDAAQ---RVKIARTDAIRK 316

Query: 298 VL-MKSGVSEDRIS 310
           +L  + G+   RI 
Sbjct: 317 ILTEEFGIDSKRIL 330


>gi|153808039|ref|ZP_01960707.1| hypothetical protein BACCAC_02325 [Bacteroides caccae ATCC 43185]
 gi|149129648|gb|EDM20862.1| hypothetical protein BACCAC_02325 [Bacteroides caccae ATCC 43185]
          Length = 380

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246
             + R+  L  +  S    LV     K  +      G +  ++      +F+   S    
Sbjct: 237 DMRDRVNALKGENESLKRDLVEARNKKPEVIVKKEGGFVPRLV-----VVFNIGKSNISK 291

Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304
              + ++ + + +  + +   ++ G+ D       A  N +LS  RA +   +++   GV
Sbjct: 292 REYMNIEAMAKGIKANPDKTFTVTGYADKG--TGSAEYNMKLSKKRAEAVRDLMVNEFGV 349

Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
              ++ K+            D   S   R+ I+
Sbjct: 350 PASQL-KVDYKGGVGNMFYDDAKLS---RVAIV 378


>gi|323524639|ref|YP_004226792.1| cytochrome c oxidase subunit II [Burkholderia sp. CCGE1001]
 gi|323381641|gb|ADX53732.1| cytochrome c oxidase, subunit II [Burkholderia sp. CCGE1001]
          Length = 547

 Score = 40.6 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+   S++P      V        AH     ++ G TDA+     A  N +L+  RA + 
Sbjct: 447 FETGKSTLPADAKAAVEAAAAYAKAHPDAKFALSGFTDAT---GSADTNAKLAKSRAEAV 503

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G +  +            RR+ I
Sbjct: 504 RDALKAAGIAEDHIILKKPETITGGSDAKEA----------RRVQI 539


>gi|326794508|ref|YP_004312328.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
 gi|326545272|gb|ADZ90492.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1]
          Length = 723

 Score = 40.6 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 89/249 (35%), Gaps = 24/249 (9%)

Query: 81  KGIFDEQNPPERSSQNKIDLSI-DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139
           K + D +  PE      I +++  +H+  + +               + + +  ++  + 
Sbjct: 458 KVMSDVRQLPEAPGIALIGMNVCGQHVCIDVLRDPDAQKVTSWLGDVVSSELITINERRF 517

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           S + +  + R   +      +   +   +        P   +   A++R + L ++   +
Sbjct: 518 SAYDERLIPRRLARIDAAFPNVAFDAQSHSFSGVLSAPKFDQLRSAIQRIQELVEVDSVL 577

Query: 200 ------SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-- 251
                 S  +   V++ ++           +     D   + +    S +    +  +  
Sbjct: 578 RGVSIKSQRVDSGVSNELLIEQQIREVE--LSSVPFDVNASQLPSNHSDLIKSLSREITR 635

Query: 252 LQKIGEVLAHSTEVISIR----GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307
           L ++ +VL     V+ +     G TD+         N +LSLDRA S  + L+  GVS +
Sbjct: 636 LAELAKVLDQRLLVVVMGTSTLGGTDSY--------NQQLSLDRADSVIKALISEGVSPE 687

Query: 308 RISKISGFA 316
            I + +G  
Sbjct: 688 -ILRTAGLG 695


>gi|167626342|ref|YP_001676842.1| outer membrane associated protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596343|gb|ABZ86341.1| outer membrane associated protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 390

 Score = 40.6 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIAR-DNWRLSLDR 291
           F   S+    +       I   +          ++++G+       +     N +LS  R
Sbjct: 280 FAYDSANLNSKGKE---AIASFVNFVKNSDIKTVTVKGYASQGATGSEFEIYNQKLSERR 336

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
           A +    + + G+  D+I    GF +          ++ N+R+
Sbjct: 337 AEAVADYMNQLGLDNDKII-TKGFGYENTLDGIHKSDARNQRV 378


>gi|118602526|ref|YP_903741.1| OmpA/MotB domain-containing protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567465|gb|ABL02270.1| OmpA/MotB domain protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 190

 Score = 40.6 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV--S 305
           T  +++    +  +    + + GHTD    R     N  L  +RA S  ++L   G+   
Sbjct: 102 TKQIVKHANFMRNNPELNLRLEGHTDE---RGTREYNLALGENRALSVKEIL---GLYDL 155

Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
             R+ K+  F   +  +     +    NRR++ +
Sbjct: 156 SSRV-KVISFGEEKPILQRHDEDVWQKNRRVEFI 188


>gi|257062023|ref|YP_003139911.1| hypothetical protein Cyan8802_4290 [Cyanothece sp. PCC 8802]
 gi|256592189|gb|ACV03076.1| hypothetical protein Cyan8802_4290 [Cyanothece sp. PCC 8802]
          Length = 230

 Score = 40.6 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 41/152 (26%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIV-----VLQKIGEVLAHST-----EVISIRGHTDA 274
           ++ I D  +   F   S+   P+        ++ KI ++   +T      VI + GHTD 
Sbjct: 68  VLIIKDSDDRK-FSSGSAELPPKLRDYITNNLIDKIEKITQETTQEYEVYVIEVIGHTDG 126

Query: 275 SPFRNI----------------------ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311
               NI                      A  N  L L RA    + L +       +  +
Sbjct: 127 QVNGNIPSNLDNNLESVAKGKKSVSNLQAGSNADLGLMRALEVVKTLQEIQKTGRLKGLQ 186

Query: 312 ISGFAHHRLKIASDPMNSAN-------RRIDI 336
              ++  +L + +    S N       RRI+I
Sbjct: 187 FRAYSAAQLLLTNGEFASINRQPDGQRRRIEI 218


>gi|119964103|ref|YP_948340.1| AraC family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119950962|gb|ABM09873.1| transcriptional regulator, AraC family [Arthrobacter aurescens TC1]
          Length = 322

 Score = 40.6 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI--G 256
           +   L   VA  I + ++    R G     ID    PM    S+        +++ +   
Sbjct: 172 VREELGANVAAAIARDMVVPPHRDGGQAQFID---RPMPRCGSAPMEELLRWMVEHLDEE 228

Query: 257 EVLAHSTEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             +      + +   T A  FR         W L+  R   A ++L  + ++ D I++++
Sbjct: 229 HSVNELAARLHMSPRTFARRFRAETGATPAAW-LNSQRVLRAQELLETTELNIDEIARVA 287

Query: 314 GFAHHRLK 321
           GF H  L 
Sbjct: 288 GFGHSVLL 295


>gi|288959220|ref|YP_003449561.1| anhydro-N-acetylmuramic acid kinase [Azospirillum sp. B510]
 gi|288911528|dbj|BAI73017.1| anhydro-N-acetylmuramic acid kinase [Azospirillum sp. B510]
          Length = 380

 Score = 40.6 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--EVLAHSTEVISIRG--- 270
           + E T  G+   +     T M    +++   +    ++ +G   +         +RG   
Sbjct: 1   MMEAT-EGLRTVVGLMSGTSMDGIDAALLRTDGRDRVEALGFLTIPYDDAFRARLRGCLG 59

Query: 271 HTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329
            TD   P   + R    L+   A +  ++L ++GV    ++ I    H    I  DP   
Sbjct: 60  RTDGGEPVAGVER---ELTEAHADAVRRLLERAGVPPAAVALIGFHGHT---IHHDPDRR 113

Query: 330 ANRRI 334
             R+I
Sbjct: 114 LTRQI 118


>gi|254490462|ref|ZP_05103648.1| hypothetical protein MDMS009_794 [Methylophaga thiooxidans DMS010]
 gi|224464206|gb|EEF80469.1| hypothetical protein MDMS009_794 [Methylophaga thiooxydans DMS010]
          Length = 212

 Score = 40.6 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 31/126 (24%)

Query: 236 MFDKSSSIPLPETIVVL-------QKIGEVLAHSTEVISIRGHTDA-----SPFRNIARD 283
           +FD   S    E   +L         + E    S + + I GHT +     +P       
Sbjct: 74  LFDSGDSNLKSEFEEILITFIPRYLSVLEKFKDSIDEVRIEGHTSSEWGNDTPPDAAYFL 133

Query: 284 NWRLSLDRAYSAYQVL----MKSGVSED------RISKISGFAHHRLKIASDPMNSAN-- 331
           N  LS +R      VL      +G+S++      +     G A  + K+  D   S N  
Sbjct: 134 NMALSQNR---TRSVLNFAYQDTGLSKNEQNWVKKTFSAVGLASAKAKLNID--GSENKE 188

Query: 332 --RRID 335
             RR+ 
Sbjct: 189 LSRRVS 194


>gi|294828486|ref|NP_714363.2| endoflagellar motor protein [Leptospira interrogans serovar Lai
          str. 56601]
 gi|293386339|gb|AAN51381.2| endoflagellar motor protein [Leptospira interrogans serovar Lai
          str. 56601]
          Length = 216

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67
          + YAD +T+L+  F++M+ I+  D    K +  
Sbjct: 1  MTYADMITLLLGLFIIMYSISQVDQTKLKQVAD 33


>gi|298208247|ref|YP_003716426.1| OmpA/MotB [Croceibacter atlanticus HTCC2559]
 gi|83848168|gb|EAP86038.1| OmpA/MotB [Croceibacter atlanticus HTCC2559]
          Length = 424

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISII 229
           NY       E  +A+  + +  DL K        S L A  +  G         ++  +I
Sbjct: 256 NYLDQDNRTESGVAVNTRGQAIDLNKNGIPDEMESALDARYLKTGSETTVNGDDVIAELI 315

Query: 230 DQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287
           D+      F  +S  P   ++  +  + + +  +T+   ++ G+ D     N A  N +L
Sbjct: 316 DKGYVNVYFKFNSEEPSVYSLEAINYLVKYMNANTDANATLVGYADE--IGNEAY-NQKL 372

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRID 335
           S  RA     +L+ SGVS  R++ + G         S        RR+ 
Sbjct: 373 SEQRAQKINDILVASGVSASRLT-VKGGGEDNSVDKSSKYARQLMRRVT 420


>gi|307293792|ref|ZP_07573636.1| flagellar motor protein [Sphingobium chlorophenolicum L-1]
 gi|306879943|gb|EFN11160.1| flagellar motor protein [Sphingobium chlorophenolicum L-1]
          Length = 161

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
            + R + +F    ++  P     L  +    A     + +   +  +       D+W L+
Sbjct: 59  TEMRASELFLPGEALLTPAGEARLAALAGRFASGRTRLEVS--SQGTDPGRQRFDSWDLA 116

Query: 289 LDRAYSAYQVLMKSGVSEDRI 309
             R  +  + L   GV  DR+
Sbjct: 117 AARLGAVARALKSHGVDRDRL 137


>gi|257459073|ref|ZP_05624192.1| OmpA family protein [Campylobacter gracilis RM3268]
 gi|257443458|gb|EEV18582.1| OmpA family protein [Campylobacter gracilis RM3268]
          Length = 157

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARD 283
            I  +  T  FD        +    +     +   +   +  + + G+ D          
Sbjct: 43  QIQSEVGTVYFDFDKFNIRADQQGTINNNAALFNQAGAESLTVKVEGNCDEW---GSDEY 99

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333
           N+ L L RA +A   L+  GV+E RIS +S +    +         ++ NRR
Sbjct: 100 NYALGLKRATAAKDALVAQGVNESRISVVS-YGESNMACTEHSKECDAQNRR 150


>gi|157737823|ref|YP_001490507.1| OmpA/MotB precursor [Arcobacter butzleri RM4018]
 gi|315637613|ref|ZP_07892819.1| lipoprotein [Arcobacter butzleri JV22]
 gi|157699677|gb|ABV67837.1| OmpA/MotB precursor [Arcobacter butzleri RM4018]
 gi|315478067|gb|EFU68794.1| lipoprotein [Arcobacter butzleri JV22]
          Length = 174

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
           ++    + +    K+  V + +T  + + G+TD          N+ L L RA +   VL+
Sbjct: 80  TADNKSKAVSNASKLSAVSSDTT--VKVLGNTDEW---GSDEYNYALGLKRANAVKDVLV 134

Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335
            +GV+ + IS +S              +  + NRR++
Sbjct: 135 ANGVTTN-ISLVS-LGESNPVCTEKTKDCWAQNRRVE 169


>gi|319781028|ref|YP_004140504.1| peptidoglycan-associated lipoprotein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166916|gb|ADV10454.1| peptidoglycan-associated lipoprotein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 168

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291
           +   FD  S+    +    L +  + L       I + GH D    R     N  L   R
Sbjct: 59  DRIFFDTDSTSIRADAQTTLSRQAQWLNQYKQYAIVVEGHADE---RGTREYNLALGARR 115

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333
           A +    L+  GVS  R+  IS +   R     D ++  S NRR
Sbjct: 116 AAATRDFLVAKGVSASRLKTIS-YGKERPVAVCDDISCWSQNRR 158


>gi|297569008|ref|YP_003690352.1| peptidoglycan-associated lipoprotein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924923|gb|ADH85733.1| peptidoglycan-associated lipoprotein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 194

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317
           +L +    + I G+TD    R     N  L   RA SA + L+  GV+ +R+  +S    
Sbjct: 114 MLDNPRVRVRIEGNTDE---RGTREYNMALGERRALSAKKYLIDLGVAAERLETLSYGEE 170

Query: 318 HRLKIASDPMN-SANRRIDILVED 340
             +    D ++ S NRR D ++  
Sbjct: 171 RPISFGRDELSWSLNRRSDFVIIR 194


>gi|300311129|ref|YP_003775221.1| hypothetical protein Hsero_1803 [Herbaspirillum seropedicae SmR1]
 gi|300073914|gb|ADJ63313.1| hypothetical protein Hsero_1803 [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179
           Q K  + +      +  +Q++       T +S   +      + EK+   E+        
Sbjct: 44  QMKVSKLISQGHVQVVGAQKASQTDAQATPESSSTQAAETPGEREKAQEIEQLKREVATL 103

Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239
           K K+ A   +     L    ++  S   A  +      +    G+ I   ++  T  FD 
Sbjct: 104 KAKLAAPPLQSDAGSLRS--AAAPSSPNAIQVKAEPSDKEVAPGLRIDANEKAVTLNFDV 161

Query: 240 SSSIPLPETIVVLQK-IGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA--- 292
            S+    E    L K IG+ +  +      I I G   +  +    R        RA   
Sbjct: 162 DSTQLSEEGGKALDKSIGDWVRRAKSSQGKIVITGVIGSGAYSESRR--------RAYYR 213

Query: 293 -YSAYQVLMKSGVSEDR-ISKIS----GFAHH 318
             +    L+ +GV ++R +S+++    G A  
Sbjct: 214 TVAVRNYLIDAGVDKERVVSRVATSENGAADD 245


>gi|148652830|ref|YP_001279923.1| outer membrane protein [Psychrobacter sp. PRwf-1]
 gi|148571914|gb|ABQ93973.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)protein-like protein [Psychrobacter sp. PRwf-1]
          Length = 266

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291
           +FD  S+         L+ + + L+ +      + GHTD++     A  N  LS  R
Sbjct: 213 LFDFDSAKIKSTYQQTLRDVAQFLSANANTKAVLEGHTDST---GPASYNLILSQAR 266


>gi|42522454|ref|NP_967834.1| outer membrane protein [Bdellovibrio bacteriovorus HD100]
 gi|39574986|emb|CAE78827.1| outer membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 368

 Score = 40.6 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F  S           LQ++ +VL  + +    + I G+ DA+        N R+S  RA 
Sbjct: 257 FRSSQYAISGADNRKLQQVAKVLNENPDLVERVEIHGYADAT---GTDEINQRISQARAD 313

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           S   +L ++G     +  +   A       S  + S +RR +++
Sbjct: 314 SVKNILERNGF--TNVEAVGKGA-----TDSTGIRSQDRRAELV 350


>gi|90578276|ref|ZP_01234087.1| probable peptidoglycan-associated lipoprotein precursor [Vibrio
           angustum S14]
 gi|90441362|gb|EAS66542.1| probable peptidoglycan-associated lipoprotein precursor [Vibrio
           angustum S14]
          Length = 174

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD             L    ++L+ +    +++ G  D+        DN  L+L RA   
Sbjct: 58  FDFDKHDLQMSEQSQLDLASKILSDNPRYRVAVIGSADSM-GGAKYNDN--LALKRAKVV 114

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRIDILVE 339
                  G+   R+  +S  +  +  ++ D  +N  NRR  +++ 
Sbjct: 115 ADYFFSKGIDRSRMVTLSSGSREQFIVSKDREVNRVNRRAQLILL 159


>gi|119900062|ref|YP_935275.1| hypothetical protein azo3773 [Azoarcus sp. BH72]
 gi|119672475|emb|CAL96389.1| conserved hypothetical secreted protein [Azoarcus sp. BH72]
          Length = 392

 Score = 40.2 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 234 TPMFDKSSS------IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287
             +F+  S+             + +++I          ++I GHT  +        N RL
Sbjct: 277 RILFNPGSTDFWRDQRVSGAYPMWIRQIARETQAGGYCLTIVGHTSRT---GAENVNARL 333

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRID 335
           SL RA     +L++   +     +I G    +  +     D  +S +RR++
Sbjct: 334 SLARARVMRDLLLREVPALSTALRIDGKGSSQNIVGSGTDDVRDSLDRRVE 384


>gi|89069601|ref|ZP_01156940.1| OmpA family protein [Oceanicola granulosus HTCC2516]
 gi|89044799|gb|EAR50899.1| OmpA family protein [Oceanicola granulosus HTCC2516]
          Length = 176

 Score = 40.2 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDP 326
           I GHTD    R     N RLS +RA +  +    +     RI  + GF+  + +   S+P
Sbjct: 108 IYGHTDE---RASYEYNVRLSENRARAVAE---VAASVGARIVDVKGFSESQPRAEGSNP 161

Query: 327 MN-SANRRIDI 336
                NRR++I
Sbjct: 162 AAWQQNRRVEI 172


>gi|162448918|ref|YP_001611285.1| ompA-family exported protein [Sorangium cellulosum 'So ce 56']
 gi|161159500|emb|CAN90805.1| ompA-family exported protein [Sorangium cellulosum 'So ce 56']
          Length = 195

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   S+    E    L  +             + + GH D    R     N  L   RA 
Sbjct: 93  FAFDSTSIEGEAAGALDALARCFVSGPLKGKGMKLIGHADP---RGETEYNLGLGQKRAG 149

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
           S  + L K G+ + RI   S           +   + +R++DIL+ D
Sbjct: 150 SVAEYLGKKGLDQGRI-ATSSKGEFEATGTDEEGWARDRKVDILLAD 195


>gi|78059712|ref|YP_366287.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383]
 gi|77964262|gb|ABB05643.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383]
          Length = 235

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 11/125 (8%)

Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET---TRTGILISIIDQRNTPMFDKSS- 241
           + +++RL D  +KI  T +           +  T        ++   D      FD+   
Sbjct: 72  LDQQQRLSDPVQKIDDTDAMTFQCGAPPQPVVATPVPVEEKPIVLAADALFA--FDEGDV 129

Query: 242 SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
               PE    L +I   L        I + G+TD     +   +   LS  RA      L
Sbjct: 130 DAINPEGRAELDEIAAKLIAMPAVRHIDVAGYTD--RLGSKEYNV-ALSQRRAEVVKWYL 186

Query: 300 MKSGV 304
              GV
Sbjct: 187 TSRGV 191


>gi|88607299|ref|YP_504946.1| OmpA family protein [Anaplasma phagocytophilum HZ]
 gi|88598362|gb|ABD43832.1| OmpA family protein [Anaplasma phagocytophilum HZ]
          Length = 205

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD            V+ ++ E L     + + + GH DA+           L   RA + 
Sbjct: 52  FDIGKYDLKGPGKKVILELVEQLRQDDSMYLVVIGHADAT--GTEEYS-LALGEKRANAV 108

Query: 296 YQVLMKSGVSEDRISKIS----GFAHHRLKI-ASDP-----MNSANRRIDILVE 339
            Q ++  G  +    +++    G A   + + ++D       N+ NRR  I+VE
Sbjct: 109 KQFII--GCDKSLAPRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVE 160


>gi|304413884|ref|ZP_07395301.1| peptidoglycan-associated lipoprotein [Candidatus Regiella
           insecticola LSR1]
 gi|304283604|gb|EFL91999.1| peptidoglycan-associated lipoprotein [Candidatus Regiella
           insecticola LSR1]
          Length = 170

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285
             + ++N   F         E+  +L +    L       I I G+ D    R     N 
Sbjct: 60  QRLQRQNIIYFGYDKYDISAESTSILNEHAAFLRADPAIKIVIEGYADE---RGTPEYNI 116

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333
            L   RA +    L   GVS  +IS +S +   +       +   + NRR
Sbjct: 117 ALGERRANAVSMYLRGQGVSNQQISIVS-YGKLKPVDLGHDENAYAKNRR 165


>gi|307944849|ref|ZP_07660187.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
 gi|307772063|gb|EFO31286.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
          Length = 310

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 90/303 (29%), Gaps = 24/303 (7%)

Query: 17  IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76
           + ++ A +   +    W        T++M    ++ I+        + I + +       
Sbjct: 1   MARRAAEEAENH----WPGFVDALSTIVMVVTFLLIILAVAIFVLSQNIAKSYIETHSAK 56

Query: 77  MTASKGIFDEQNPPERS----SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132
                G   + +P   +       K++  + +  T+   +        +           
Sbjct: 57  TEQGGGDKMDPDPGSATKEFMGDKKVEAPVPDTATEKMTEAPPPPVPTEPDPTVTPQPQE 116

Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192
            ++          +    S+   +        K+ +K+          +    ++    L
Sbjct: 117 PVTQPPAPTTSATAPQSLSDTPNENTAPKSPGKTQSKDTFNSQLAEELKGNDDVEEDTDL 176

Query: 193 QDLAKK--ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250
             L++K  I      +   +  +     T +    I +ID      F  +S         
Sbjct: 177 SILSRKVPIEEKRIVVAPQDKTEQPKASTVQKAQTILVID------FQSASVKMDEAAAN 230

Query: 251 VLQKIGE----VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306
            ++K  +    +L      +++   T  SP         R++  RA +A   L+ SG   
Sbjct: 231 EIRKFSQTNSAILKDQ--KVTVWSFT--SPAEGSVSQAKRVAYYRALAARNNLLSSGTPP 286

Query: 307 DRI 309
           + I
Sbjct: 287 ENI 289


>gi|218674007|ref|ZP_03523676.1| hypothetical conserved membrane protein [Rhizobium etli GR56]
          Length = 50

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341
           +L  SGV   ++    G A  +   A+D     +ANRRI+IL++ R
Sbjct: 5   LLAASGVPTGQLKS-QGRAATQPLAANDSREGRAANRRIEILIQKR 49


>gi|171463096|ref|YP_001797209.1| peptidoglycan-associated lipoprotein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192634|gb|ACB43595.1| peptidoglycan-associated lipoprotein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 166

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)

Query: 231 QRNTPMFDKS------SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
             ++P+F+KS            +   +L      L  + +  I I+G+ D    R  A  
Sbjct: 51  DPSSPLFEKSVYFGFDEYTVQTKYQKMLSAHAGYLKANPKQKIIIQGNADE---RGTAEY 107

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337
           N  L   R+ +  + L   GVS+D++  +S F   + K   D     + NRR DI+
Sbjct: 108 NLALGQRRSDAVCKSLNLIGVSDDQMEAVS-FGKEKPKAEGDNEAAWAENRRADIV 162


>gi|189425754|ref|YP_001952931.1| hypothetical protein Glov_2698 [Geobacter lovleyi SZ]
 gi|189422013|gb|ACD96411.1| hypothetical protein Glov_2698 [Geobacter lovleyi SZ]
          Length = 370

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176
             +  +  Q    N    S + +     + +T   +K  +L K+ D +K         + 
Sbjct: 148 KQSADQTNQITSLNAKVASLTAELSAKGSVITSSDQKTGELLKALDEQKKATASSEQRVA 207

Query: 177 PLSKEKILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234
            L++E     ++  +LQ   +++     +    A+    G + ++T  G+ ++    R+ 
Sbjct: 208 ALTQELEGLKQQTAQLQATGEQLAAEKRIKAFEAEVGKLGGIVKSTSAGLSVTF--PRSQ 265

Query: 235 PMFDKS-SSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR- 291
            +     S+    +    + K+ E++       I +R H    P R+          D  
Sbjct: 266 LLKVTGKSTTLTADGDKQIVKLAELVRTYPEYRIKLRVHGFGQPSRHEDAAA----TDHM 321

Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
           A    + L+  G  E    +  G                NRR++I+
Sbjct: 322 ARFIREGLLTKGKLEQATVEALGVGAAEPVYPKG-NIEGNRRVEII 366


>gi|217977705|ref|YP_002361852.1| nuclease [Methylocella silvestris BL2]
 gi|217503081|gb|ACK50490.1| nuclease [Methylocella silvestris BL2]
          Length = 355

 Score = 40.2 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 40/190 (21%)

Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL------SGLVADNIVKGVLF 217
           E +    +          + L +K  +    L  KI + L         +   + KG   
Sbjct: 124 ENARKDAQFLAEAERLHMRGLVLKDAEANASLVAKIEAALGEQPVSEATILTAVEKGQFQ 183

Query: 218 ETTRTGIL----ISIIDQRNTPMFDKSSSIPLPETIVVLQK--IGEVLAHS----TEVIS 267
           +    G      I + +      F   S+   P+   VL    +  +L  +     ++I 
Sbjct: 184 DKMPPGHRWPPIIKLSEADGY-FFANGSAELEPKFKEVLHSSVVDSLLKTAKEYDVDIIE 242

Query: 268 IRGHTDASPF----------------------RNIARDNWRLSLDRAYSAYQVLMKSG-V 304
           + GHTD  P                       R    DN  L L RA +   VL     +
Sbjct: 243 VVGHTDEQPIAPRTSNLDKDLAFSIDHPDASARLRPADNAGLGLARAVAVVSVLSSDKRL 302

Query: 305 SEDRISKISG 314
           S  +I  +SG
Sbjct: 303 SPYKILPLSG 312


>gi|58616636|ref|YP_195845.1| outer membrane protein [Achromobacter xylosoxidans A8]
 gi|190571962|ref|YP_001967686.1| hypothetical protein pCNB_p42 [Comamonas testosteroni CNB-1]
 gi|311109703|ref|YP_003982555.1| outer membrane protein 2 [Achromobacter xylosoxidans A8]
 gi|58416234|emb|CAI47829.1| outer membrane protein [Achromobacter xylosoxidans]
 gi|119943700|gb|ABM06222.1| hypothetical protein [Comamonas testosteroni CNB-1]
 gi|310764392|gb|ADP19840.1| outer membrane protein 2 [Achromobacter xylosoxidans A8]
          Length = 147

 Score = 40.2 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P+         E+LA +    +I + G T              L+L RA S
Sbjct: 45  FSDSSTTFRPDAST-----AELLAEAKGATIIYVSGRTSTLRPSAADE---ALALRRALS 96

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDILV 338
           A Q L+  GVS  +I      A   +   S P     N+R+DI V
Sbjct: 97  ARQYLIARGVSPLKIMVNFASASDFVADNSTPEGRHQNQRVDIEV 141


>gi|326776942|ref|ZP_08236207.1| OmpA/MotB domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326657275|gb|EGE42121.1| OmpA/MotB domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 215

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
            + + G TD         D   LS  RA + + VL K  +      +I G+         
Sbjct: 138 KVRVFGFTDNL-GSAAHGDV--LSKQRADAVHGVLSKE-LGATITYEIRGYGEQYPIASN 193

Query: 323 ASDPMNSANRRIDI 336
           +++     NRR+++
Sbjct: 194 SNEEGRKKNRRVEV 207


>gi|187921515|ref|YP_001890547.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gi|187719953|gb|ACD21176.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN]
          Length = 362

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+    +  LP     + ++   L     V  + I G+ D          N  LS+ RA 
Sbjct: 250 FNGGDDAAILPAGKRQMNEVAVRLKKLPSVHELKITGYADRL---GDKSYNQGLSMQRAR 306

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------SANRRIDI 336
           +  + L   GVS    ++  G A+  +       +      + NRR++I
Sbjct: 307 TVERYLQSLGVSLPMTAQGRGSANPLVDCRQSKGDVLTRCLAPNRRVEI 355


>gi|325522834|gb|EGD01304.1| peptidoglycan-associated lipoprotein [Burkholderia sp. TJI49]
          Length = 140

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  S     E   +LQ+  + L    +  + I+G+TD    R  +  N  L   RA + 
Sbjct: 68  FDFDSYSVKDEYQPLLQQHAQYLKSHPQRHVLIQGNTDE---RGTSEYNLALGQKRAEAV 124

Query: 296 YQVLMKSGVSEDRISK 311
            + +   GV++ ++  
Sbjct: 125 RRAMSLLGVNDSQMEA 140


>gi|86136815|ref|ZP_01055393.1| OmpA domain protein [Roseobacter sp. MED193]
 gi|85826139|gb|EAQ46336.1| OmpA domain protein [Roseobacter sp. MED193]
          Length = 518

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  S+ P  ++   ++++   L       +V++  G +D       A  N  ++L RA 
Sbjct: 411 FEAGSARPDAQSRSNIEQLARALETGLYDGKVLNFVGFSDGD---GAASGNRAIALKRAQ 467

Query: 294 SAYQVLMKSGVSED--RI-SKISGFAHHRLKIASDP--MNSANRRIDILVE 339
                ++ +  +    R+  ++  F         D       NRR+++ V+
Sbjct: 468 GVRDAVLATAEAGSVARVDVQVDAFGEALPMACDDSDWGRQVNRRVEVWVQ 518


>gi|332653291|ref|ZP_08419036.1| OmpA family protein [Ruminococcaceae bacterium D16]
 gi|332518437|gb|EGJ48040.1| OmpA family protein [Ruminococcaceae bacterium D16]
          Length = 213

 Score = 39.9 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 21/122 (17%)

Query: 234 TPMFDKSSSIPLPET--IVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
             MF   S   L E      L+ + EV LAH    I + G T     +        LS  
Sbjct: 86  QVMFKAESDAFLDEAAAKEALKPVAEVILAHPDHPILLAGTTATDGDQQARV---DLSNR 142

Query: 291 RAYSAYQVLMKS-GVSEDRISKIS-GFAHHRLKIAS----------DPMNSANRRIDILV 338
           RA +   +L+ + GV E++++ I  GF      +            +   + NRR+  +V
Sbjct: 143 RAAAVKNLLVSAFGVPENQLTTIGLGF-EADPFVRGQDRDANGKFVESEGAKNRRV--IV 199

Query: 339 ED 340
            D
Sbjct: 200 MD 201


>gi|149912933|ref|ZP_01901467.1| OmpA/MotB [Roseobacter sp. AzwK-3b]
 gi|149813339|gb|EDM73165.1| OmpA/MotB [Roseobacter sp. AzwK-3b]
          Length = 512

 Score = 39.9 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           +    ++   +    A  I+   S +  + + + V   +    +  +         F+  
Sbjct: 356 QAPEEIEINAQGDRFANAITQAGSEVGLEELQRMVALLSPLRRLTTTFR-------FEAG 408

Query: 241 SSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           S+    ++   +Q++   L    +    +   G +D       A  N R++  RA +   
Sbjct: 409 SARLDAQSRSNVQQLARALEIGLYDARRLVFVGFSDGE---GPAAGNRRIAEQRAEAVKT 465

Query: 298 VLMKSGVSEDRISKIS----GFAHHRLKIASDPM--NSANRRIDILV 338
            ++ +      +S+I+     F         D       NRR+++ V
Sbjct: 466 AVIAA-AETANLSRITIETAAFGEAMPMACDDSEWGRQVNRRVEVWV 511


>gi|226225592|ref|YP_002759698.1| hypothetical protein GAU_0186 [Gemmatimonas aurantiaca T-27]
 gi|226088783|dbj|BAH37228.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 230

 Score = 39.9 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 21/161 (13%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258
           +   L G +    +     ++        ++   ++ +F++  S        V++    +
Sbjct: 45  LIKQLRGELVTAGLDSAAIDSIPNDPSTVLVILPDSVLFERGDSRMSAAGQNVVRIATPL 104

Query: 259 LAHST---------EVISIRGHTDAS-PFR----NIARDNWRLSLDR-----AYSAYQVL 299
           LA            + + + GHTD + PF          N  LS  R     A S   + 
Sbjct: 105 LAGVICADSIRQTLDQVVVEGHTDNTIPFGMRPEAGRMFNLELSQRRSMNFVATSTATLA 164

Query: 300 MKSGVSE--DRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            +  + E    +   +G             +S  RR+ + +
Sbjct: 165 ERDTLLECYLGLVSATGRGQENPLPRIPADSSPQRRVVLRI 205


>gi|88858356|ref|ZP_01132998.1| hypothetical protein PTD2_13239 [Pseudoalteromonas tunicata D2]
 gi|88819973|gb|EAR29786.1| hypothetical protein PTD2_13239 [Pseudoalteromonas tunicata D2]
          Length = 247

 Score = 39.9 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   SS         L ++  VLA + +  + ++G  D    R   + N  LS  R  + 
Sbjct: 132 FRSGSSAIEAHFASQLDEVAAVLAQNPDLSLDLQGFADR---RGDEQANLILSKQRVTNV 188

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343
              L+K GV+  R++    F       A         +RR+ +  ++ Q 
Sbjct: 189 KAYLVKQGVNAVRLN-TDAFGEQHALAAQQDFEGDFFDRRVTLKAKNNQA 237


>gi|254476965|ref|ZP_05090351.1| outer membrane protein, OmpA/MotB family [Ruegeria sp. R11]
 gi|214031208|gb|EEB72043.1| outer membrane protein, OmpA/MotB family [Ruegeria sp. R11]
          Length = 587

 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRL 127
             G  L   SK + +  +        +  +  D+        S        +   +   +
Sbjct: 307 AIGTLLNNGSKVVANSGDRAIVEQNGQYRVLKDDDALLRQPGSNVTTYRFADGSTRTVVV 366

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
             N   +   + +E      T+    G+ +    D +K+  +     LP + +++     
Sbjct: 367 RENGVEVETIRSAEGRVLRRTKLLPDGRSVVLFDDTQKA-ERVVVNELPQVQEDRSAVSS 425

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247
            +    +      +       +                ++ +   ++  FD  SS+  P+
Sbjct: 426 SRAVSAEDLAAALAAQDAKSVERRFSLAQIRNIDAVRRLTPVINVDSVNFDTGSSVIRPQ 485

Query: 248 TIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
               L  +G  L    +        I GHTDA      A  N  LS  RA     + +  
Sbjct: 486 EAEELAALGNALRELIDRNPAEVFLIEGHTDAV---GAATFNLALSDRRAE-TVALALTE 541

Query: 303 G--VSEDRISKISGFAHHRLKIAS 324
              V  + +  + G+    L + +
Sbjct: 542 YFDVPPENMV-VQGYGESDLAVRT 564


>gi|91781675|ref|YP_556881.1| putative cytochrome c oxidase [Burkholderia xenovorans LB400]
 gi|91685629|gb|ABE28829.1| Putative cytochrome c oxidase [Burkholderia xenovorans LB400]
          Length = 538

 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        +H     ++ G TDA+     A  N +L+  RA + 
Sbjct: 442 FDTGKSTLPAEAKAAVEAAAAYAKSHPDAKFTLSGFTDAT---GSADLNAKLAKSRAEAV 498

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G +  +            RR+ I
Sbjct: 499 RDALKAAGIAEDHIILKKPETITGGSDAKEA----------RRVQI 534


>gi|297841395|ref|XP_002888579.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334420|gb|EFH64838.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2125

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 8/185 (4%)

Query: 96   NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
                 S +   +++  +              ++ +    +N+       +     S+   
Sbjct: 1932 QSFPASTNLEGSESKTESVAEEEPDLPGSSSIQEDESNETNNSLLAEEADDQHFASDNAT 1991

Query: 156  DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KISSTLSGL-----VA 208
            D  +    +KS   +E    P  +  +    K K+  ++     +I   L+         
Sbjct: 1992 DTTREDSNDKSKEVDEETVEPYFTTSEDSVDKSKEVEEETVDPCRIEEALTSQNDKTSSD 2051

Query: 209  DNIVKGVLFETTRTGILISIIDQR-NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267
            D+ V+    E+   G  I +     ++P  D +S    P  I  L +      H    + 
Sbjct: 2052 DHPVESKNLESENIGTDIKLTSTEVDSPALDDTSDDLEPHQIQKLTEDESSKEHVGADVI 2111

Query: 268  IRGHT 272
            + GHT
Sbjct: 2112 VTGHT 2116


>gi|160899374|ref|YP_001564956.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160364958|gb|ABX36571.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1]
          Length = 174

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  + +      +   + + +V+A         I G+ DA+     A  N  L+  RA +
Sbjct: 80  FASAKAEL---AVGANEALADVVAGVKGGKRAVISGYHDAT---GSAELNAELAKKRALA 133

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
               L   GV+E+++           ++ +D  N+  RR+++++ D
Sbjct: 134 VQAALSALGVAEEKVEL-----KKPEQLQADGSNAEARRVEVILVD 174


>gi|295691377|ref|YP_003595070.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756]
 gi|295433280|gb|ADG12452.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756]
          Length = 154

 Score = 39.9 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD+ S+   PE  +VL            E + + G  DA      +  N  LS  RA   
Sbjct: 49  FDQDSAALTPEARMVLANARTQAKGCRVESVRVIGLADAV---GASEANLALSKRRADVV 105

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337
              L   G  +        G A  R    S       RR DI+
Sbjct: 106 SSALAAHGFGKADFDLAAVGDAGAR--APSGAAAPLRRRADIV 146


>gi|296448454|ref|ZP_06890337.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
 gi|296254042|gb|EFH01186.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b]
          Length = 571

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S    E   V   +  VL  +    ++I G  D         +N  +   RA + 
Sbjct: 479 FSADHSALAEEAEPVADALAFVLLRAPRAKVAIIGRFDG---AGSEAENETIGRRRAEAL 535

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
              L+ +GV   R+   +  A           ++  RRI+++V+
Sbjct: 536 RDYLVAAGVDATRLKAAASGASGD--------DAPGRRIELMVD 571


>gi|223041685|ref|ZP_03611882.1| outer membrane protein P5 precursor (OMP P5) [Actinobacillus minor
           202]
 gi|223017549|gb|EEF15963.1| outer membrane protein P5 precursor (OMP P5) [Actinobacillus minor
           202]
          Length = 344

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRA 292
           +F    S   P     L      +         I + G+ D          N +LS  RA
Sbjct: 224 LFAFGKSXLKPAAAQALDAANNEINALGLANPAIQVNGYXDRI---GKZXXNLKLSQRRA 280

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341
            +    L+  G +   ++ + G+        +  D +            +RR+++ V+  
Sbjct: 281 ETVANYLVSKGQNXANVTAV-GYGXANPVTGNTCDAVKGRKALIACLAPDRRVEVQVQGS 339

Query: 342 Q 342
           +
Sbjct: 340 K 340


>gi|257456384|ref|ZP_05621580.1| OmpA family protein [Treponema vincentii ATCC 35580]
 gi|257446044|gb|EEV21091.1| OmpA family protein [Treponema vincentii ATCC 35580]
          Length = 175

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F   +      T   L  I E L       I I GH       +  +D  +LSL RA + 
Sbjct: 74  FAPKTYTIDTFTAHKLDGIAEQLKAKDVTQIKIVGHCAKM---DSTKDEEKLSLQRALAV 130

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336
            +    +G        ++         +   ++    NRR++I
Sbjct: 131 ARYFESTGAFTADNMTVAAEGAQHPAGSHAEISERKHNRRVEI 173


>gi|34499431|ref|NP_903646.1| hypothetical protein CV_3976 [Chromobacterium violaceum ATCC 12472]
 gi|34105283|gb|AAQ61638.1| hypothetical protein CV_3976 [Chromobacterium violaceum ATCC 12472]
          Length = 145

 Score = 39.9 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+K ++   P     L  +   L  + + I IRGH       N        S  RA +  
Sbjct: 59  FEKMNAKLTPVGEAQLDLLLPKLKTA-KSILIRGHCYRRDIGNAKAA----SQTRAANVR 113

Query: 297 QVLMKSGVSEDRI 309
             LM +GV   +I
Sbjct: 114 DYLMNAGVPSSKI 126


>gi|182436312|ref|YP_001824031.1| putative secreted protein [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464828|dbj|BAG19348.1| putative secreted protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 219

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322
            + + G TD         D   LS  RA + + VL K  +      +I G+         
Sbjct: 142 KVRVFGFTDNL-GSAAHGDV--LSKQRADAVHGVLSKE-LGATITYEIRGYGEQYPIASN 197

Query: 323 ASDPMNSANRRIDI 336
           +++     NRR+++
Sbjct: 198 SNEEGRKKNRRVEV 211


>gi|90410140|ref|ZP_01218157.1| hypothetical protein P3TCK_05216 [Photobacterium profundum 3TCK]
 gi|90329493|gb|EAS45750.1| hypothetical protein P3TCK_05216 [Photobacterium profundum 3TCK]
          Length = 237

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 25/123 (20%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-------VISIRGHTDAS-----PFRNIARD 283
           +F    +   P+  V+L         +          + I GHT +             +
Sbjct: 100 LFANGRASLTPQFQVILDDFFPRYLQALNTYKPSIQEVRIEGHTSSRWNNGSTDSEAYFN 159

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRI---------SKISGFAHHRLKIASD--PMNSANR 332
           N RLS  R  +    +M   +   +I             G++  +  + +D       +R
Sbjct: 160 NMRLSQSRTRTVLSYVMA--LEPVKINHYDWVKGHVAAVGYSSSKTIVNTDGIEDEKKSR 217

Query: 333 RID 335
           R+ 
Sbjct: 218 RVS 220


>gi|260909461|ref|ZP_05916166.1| immunoreactive antigen PG33 [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636428|gb|EEX54413.1| immunoreactive antigen PG33 [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 174

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
           +Q + +    +   I++ G+ D++     A  N  LS  RA +    L+K GVS DRIS 
Sbjct: 93  VQAVAKYAKENNSNINVVGYADSA--TGSANVNQVLSDKRAETVANELVKMGVSRDRIST 150

Query: 312 IS-GFAHHRLKIASDPMNSANRR 333
           +  G       I      S NRR
Sbjct: 151 VGKGGVDDLSPI------SFNRR 167


>gi|226365373|ref|YP_002783156.1| hypothetical protein ROP_59640 [Rhodococcus opacus B4]
 gi|226243863|dbj|BAH54211.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 172

 Score = 39.9 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  ++     + V ++ +   +      I I  +   +           L+  RA +  
Sbjct: 80  FESGTAELNAISDVTIKAVAAAMKAGDSKIEIEAYASNTDEAAAEL----LADQRAQAVA 135

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             L   GV + RI    G A+    +  D        ++I VED
Sbjct: 136 NALEAQGVDKSRI-STEGTANPPEGVNVDQ-------VEITVED 171


>gi|85705706|ref|ZP_01036803.1| OmpA domain protein [Roseovarius sp. 217]
 gi|85669696|gb|EAQ24560.1| OmpA domain protein [Roseovarius sp. 217]
          Length = 523

 Score = 39.9 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 56/171 (32%), Gaps = 28/171 (16%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           +    ++   +    A  I+   + L  D + + V        +  +         F+  
Sbjct: 367 QTPEEIEINAQGDRFANAIAQAGAELGLDELQRMVRVLGPLKRLTTTFR-------FEAG 419

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--------NWRLSLDRA 292
           S     ++    +++   +          GH DA     +           N  ++L RA
Sbjct: 420 SVRLDAQSRSNAEQLARAMEL--------GHYDARRLVFVGFSDGDGPAGTNRDIALRRA 471

Query: 293 YSAYQVLMKSGVSE--DRI-SKISGFAHHRLKIASDP--MNSANRRIDILV 338
            +  + ++++  +   +RI  ++  F         D       NRR+++ V
Sbjct: 472 ETVRRAVVRAAETANLERIKLELEAFGEAMPMACDDTAWGRQVNRRVEVWV 522


>gi|88799106|ref|ZP_01114686.1| ompA family protein [Reinekea sp. MED297]
 gi|88778089|gb|EAR09284.1| ompA family protein [Reinekea sp. MED297]
          Length = 1048

 Score = 39.9 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD  SS   P  +  L K+  +L   +   + I GHTD          N  LS  RA S 
Sbjct: 290 FDFDSSFLKPTMLNGLVKLERLLKENTDYKVQIVGHTD---LVGGNDYNMSLSERRARSV 346

Query: 296 YQVLM 300
              + 
Sbjct: 347 LAYVE 351


>gi|242237467|ref|YP_002985648.1| hypothetical protein Dd703_0007 [Dickeya dadantii Ech703]
 gi|242129524|gb|ACS83826.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 248

 Score = 39.5 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 27/151 (17%)

Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-I 255
           + +   L     D++ +     T    + +    Q    +F+ +S+   PE   +L + I
Sbjct: 59  QGLGQALQHEFKDDLKR--WHATIDEDLTVRF--QEPNILFNNNSADLKPEFKAILDEFI 114

Query: 256 GEVLAHSTEV--------ISIRGHTD-----ASPFRNIARDNWRLSLDRAYSAYQVLMKS 302
              L   T          I I GHT          +     N  LS  R  S  + +M  
Sbjct: 115 PRYLNIITNPKYIDNIEEIRIEGHTSTVWRAGVSEKEAYIHNMELSQSRTRSTLEYIMNM 174

Query: 303 GV--SEDRIS-------KISGFAHHRLKIAS 324
            V    + +        +  GF+  R   + 
Sbjct: 175 SVVSEPESMFSWFKGHVRAIGFSSARPVDSE 205


>gi|153827984|ref|ZP_01980651.1| putative OmpA domain protein [Vibrio cholerae 623-39]
 gi|148876565|gb|EDL74700.1| putative OmpA domain protein [Vibrio cholerae 623-39]
          Length = 282

 Score = 39.5 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +       +   L ++ + L       + I G  D+     +   N  L+  RA +
Sbjct: 178 LFPVNEFELTQASKETLLQLIQKLNKLPVKELVIYGVADS---SGLYAKNRVLADRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L++ GV   R   I         + +       RR  I
Sbjct: 235 VRNFLIEEGV---RGISIMTRGSVENGLETAEQRVKQRRFSI 273


>gi|153215426|ref|ZP_01950010.1| hypothetical protein A55_B0269 [Vibrio cholerae 1587]
 gi|124114720|gb|EAY33540.1| hypothetical protein A55_B0269 [Vibrio cholerae 1587]
          Length = 275

 Score = 39.5 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +       +   L ++ + L       + I G  D+     +   N  L+  RA +
Sbjct: 171 LFPVNEFELTQASKETLLQLIQKLNKLPVKELVIYGVADS---SGLYAKNRVLADRRALA 227

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L++ GV   R   I         + +       RR  I
Sbjct: 228 VRNFLIEEGV---RGISIMTRGSVENGLETAEQRVKQRRFSI 266


>gi|213025158|ref|ZP_03339605.1| outer membrane protein A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 69

 Score = 39.5 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288
           ++  +F+ + S   PE    L ++   L++       + + G TD     + A  N  LS
Sbjct: 1   KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 57

Query: 289 LDRAYSAYQVLM 300
             RA S    L+
Sbjct: 58  EKRAQSVVDYLI 69


>gi|270293738|ref|ZP_06199940.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275205|gb|EFA21065.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 498

 Score = 39.5 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            F+  ++    ++ +V L ++  V       +++ G  DA+    +  D   LS+ RA  
Sbjct: 399 FFEVGTAKLTDKSQLVNLDELARVAKKYGLSVTVVGAADAATGTAVIND--ALSISRADY 456

Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIAS 324
               L+K G++ + I+K+   G + +    A+
Sbjct: 457 IATELVKRGLAVEHITKVGKGGISDYNPTEAN 488


>gi|255731542|ref|XP_002550695.1| hypothetical protein CTRG_04993 [Candida tropicalis MYA-3404]
 gi|240131704|gb|EER31263.1| hypothetical protein CTRG_04993 [Candida tropicalis MYA-3404]
          Length = 759

 Score = 39.5 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 18/221 (8%)

Query: 56  ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115
                  +  +QY  P   +   + +    ++    + +Q+       +       DL+ 
Sbjct: 34  EVKPKVNRFAQQYSKPATTSQ--SPRNKSPKKQQQSKQNQSNTKSQSFQKPQSKGNDLEQ 91

Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
               Q ++ +          N  + E       +   K +   +    +K + K     L
Sbjct: 92  AKLEQYQKLRSRMEAEVKNGNKSKEEVPPVQQQQAPVKPRKKIQVRKQKKPVKKLVKIQL 151

Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV---KGVLFETTRTGILISIIDQR 232
           PP      LA      L D+ KK+       +  N +   +         GI + + D  
Sbjct: 152 PPFITVSNLATIMHVPLNDVFKKLEGLGFEDIRHNYIIDKENAAMVADEYGIEVEVSDSS 211

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
           N  +F      P PE   +LQ           V++I GH D
Sbjct: 212 NEDLF------PAPEKPELLQ-------DRPPVVTIMGHVD 239


>gi|269958634|ref|YP_003328421.1| putative outer membrane protein OmpA [Anaplasma centrale str.
           Israel]
 gi|269848463|gb|ACZ49107.1| putative outer membrane protein OmpA [Anaplasma centrale str.
           Israel]
          Length = 212

 Score = 39.5 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIAS- 324
           I GHTD+   R     N  L   RA +  + ++     +S    ++  G A   + + S 
Sbjct: 78  IVGHTDS---RGTEEYNLALGERRANAVKEFILGCDRSLSPRISTQSRGKAEPEILVYSS 134

Query: 325 -----DPMNSANRRIDILVE 339
                +  ++ NRR+ +++E
Sbjct: 135 DFKEAEKAHAQNRRVVLIME 154


>gi|6009519|dbj|BAA84943.1| NIK-related kinase [Mus musculus]
          Length = 1455

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 71/259 (27%), Gaps = 27/259 (10%)

Query: 52  WIINATDDD-----TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI 106
           W+ N  D         +     F P      T+       +  P      ++ + +   +
Sbjct: 394 WLPNQEDPQDQELQQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQV 453

Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEK 165
                  K     +    Q  +     +               ++E+ KDL +   + + 
Sbjct: 454 EAPPQVSKAAQMLKSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQG 513

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
                E       ++++ +     ++  +  ++         A    +  + +      +
Sbjct: 514 QDRAPEQPRQGQAAEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--V 571

Query: 226 ISIIDQRNTPMFDKSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
           + +  Q   P+  ++  + LP      +L  +GE                          
Sbjct: 572 VQVHAQVLLPLLSQNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQ 614

Query: 284 NWRLSLDRAYSAYQVLMKS 302
            W L   RA  A Q L++ 
Sbjct: 615 AWDLEASRAVGAVQALIEG 633


>gi|300790891|ref|YP_003771182.1| hypothetical protein AMED_9091 [Amycolatopsis mediterranei U32]
 gi|299800405|gb|ADJ50780.1| hypothetical protein AMED_9091 [Amycolatopsis mediterranei U32]
          Length = 377

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTE-VISIRGHTDASPFRN 279
            IS     +   F   S++  P  + +L+ +       LA     V+++RG+  A P  +
Sbjct: 256 RISTTVSDSALGFTGDSAVLSPGALDLLRTLAGSITAALAGRPGAVVTVRGY-AADPPGS 314

Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRR 333
            A     L+  RA      L ++GV   R+   +G      + A       +   +A RR
Sbjct: 315 TAAGRQALADLRAQVVSDALRQAGVR-QRVDA-AGVGTQPDRTAMAGGRFDEAAAAAMRR 372

Query: 334 IDI 336
           ++I
Sbjct: 373 VEI 375


>gi|207727804|ref|YP_002256198.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2
           protein [Ralstonia solanacearum MolK2]
 gi|206591045|emb|CAQ56657.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2
           protein [Ralstonia solanacearum MolK2]
          Length = 527

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P               AH     ++ G TD +     A  N +L+  RA + 
Sbjct: 431 FDTGKSTLPADAKAAGDAAAAYAKAHPDAKFTVSGFTDTT---GSADLNAKLAKSRAQAV 487

Query: 296 YQVLMKSGVSEDRIS-----KISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G A+ +            RR+ I
Sbjct: 488 RDALKAAGIAEDHIVLKKPETITGGANAKEA----------RRVQI 523


>gi|83746859|ref|ZP_00943906.1| Cytochrome c oxidase polypeptide II [Ralstonia solanacearum UW551]
 gi|207742207|ref|YP_002258599.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2
           oxidoreductase protein [Ralstonia solanacearum IPO1609]
 gi|83726444|gb|EAP73575.1| Cytochrome c oxidase polypeptide II [Ralstonia solanacearum UW551]
 gi|206593595|emb|CAQ60522.1| cytochrome c oxidase polypeptide II cytochrome aa3 subunit 2
           oxidoreductase protein [Ralstonia solanacearum IPO1609]
          Length = 525

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TD +     A  N +L+  RA + 
Sbjct: 429 FDTGKSTLPADAKAAVDAAAAYAKAHPDAKFTVSGFTDTT---GSADLNAKLAKSRAQAV 485

Query: 296 YQVLMKSGVSEDRIS-----KISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G A+ +            RR+ I
Sbjct: 486 RDALKAAGIAEDHIVLKKPETITGGANAKEA----------RRVQI 521


>gi|23005719|ref|ZP_00048396.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum
           MS-1]
          Length = 160

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 23/159 (14%)

Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKILAMKRKK 190
           + Q +         +E+G         E      +++ ++       LS  +    + + 
Sbjct: 2   AAQGKSADVYAQLSAERGSTQRSQNQFELLNEQIRALLRQLAALEDALSASESRDRESQA 61

Query: 191 RLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           R+ +L  +++  L+  V +           ++ ++   +   I+      ++  +F   S
Sbjct: 62  RIAELGSRLNVALAQRVQELARYRSDFFGRLRQIIGSRSDVRIVGDRFVLQSEVLFAAGS 121

Query: 242 SIPLPETIVVLQKIGEVL--------AHSTEVISIRGHT 272
           +   PE    L +I   +        A    ++ + GHT
Sbjct: 122 AALKPEAGPELDRISGAILDIAKEIPADIPWILRVDGHT 160


>gi|163796353|ref|ZP_02190314.1| Lysophospholipase [alpha proteobacterium BAL199]
 gi|159178495|gb|EDP63037.1| Lysophospholipase [alpha proteobacterium BAL199]
          Length = 364

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    S    +    L  +   +    T  I +  + D     + A    RLSL RA + 
Sbjct: 269 FGSGQSTLPDDAKGNLDSLAGRLRKDETLRIQLLAYADGD--EDNANKARRLSLSRALAV 326

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
              L+   V   R+  +    +       D       R+D+++  R
Sbjct: 327 RAYLIDKQVQSTRMD-VRALGNRAKDSPKD-------RVDVVLVSR 364


>gi|261599880|emb|CAP16950.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 226

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 183 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 225


>gi|167966446|gb|ACA13272.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 232

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 189 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 231


>gi|228470997|ref|ZP_04055842.1| outer membrane protein HMP [Porphyromonas uenonis 60-3]
 gi|228307394|gb|EEK16408.1| outer membrane protein HMP [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290
              T +F   SS      ++ L  + E +      I + G+TD +   N    N  LS  
Sbjct: 286 SDKTILFKFDSSRIDKNQMITLYNVSEYVKAHNTPILVIGYTDTT--GNAQY-NLGLSER 342

Query: 291 RAYSAYQVLMKS-GVSEDRI 309
           RA +  + L+   GVS D I
Sbjct: 343 RAKAVAKALVNDFGVSADMI 362


>gi|73746013|ref|YP_302605.1| outer membrane protein precursor [Sphingomonas sp. A1]
 gi|72534579|dbj|BAE19699.1| Upf30.5 [Sphingomonas sp. A1]
          Length = 155

 Score = 39.5 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           F  SS+   P+         E+LA +    +I + G T              L+L RA S
Sbjct: 53  FPDSSTTFRPDAST-----AELLAEAKGAAIIYVSGRTSTLRPSAADE---ALALRRALS 104

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDILV 338
           A Q L+  GVS  +I      A   +   S P     N+R+DI V
Sbjct: 105 ARQYLIARGVSPLKIMVNFASASDFVADNSTPEGRYQNQRVDIEV 149


>gi|170728833|ref|YP_001762859.1| OmpA domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169814180|gb|ACA88764.1| OmpA domain protein transmembrane region-containing protein
           [Shewanella woodyi ATCC 51908]
          Length = 341

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286
           I       +F   SS         L ++  +   S    I + G +D       +  N +
Sbjct: 225 IEQSSVAVLFGFDSSSLSSTAKAKLDEVIRLSKQSDNDTILLNGQSDNQ---GDSEYNQK 281

Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340
           LS  R       L  +GV    +  + +G         S    +  RR+ I +  
Sbjct: 282 LSEARVQQVADYLNANGVEVQTLEQQATG--EQNAHANSRTDRALERRVIITLTS 334


>gi|187922551|ref|YP_001894193.1| cytochrome C oxidase subunit II [Burkholderia phytofirmans PsJN]
 gi|187713745|gb|ACD14969.1| cytochrome c oxidase, subunit II [Burkholderia phytofirmans PsJN]
          Length = 544

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TDA+        N +L+  RA + 
Sbjct: 448 FDTGKSTLPADAKAAVDAAAAYAKAHPDAKFALSGFTDAT---GSGDLNAKLAKSRAEAV 504

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G +  +            RR+ I
Sbjct: 505 RDALKAAGIAEDHIILKKPETITGGSDAKEA----------RRVQI 540


>gi|117676216|ref|YP_863792.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3]
 gi|117615040|gb|ABK50493.1| OmpA/MotB domain protein [Shewanella sp. ANA-3]
          Length = 247

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 226 ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282
           I I    +  ++ +  ++    + E   VL K  + L  +   + + G+ D       A 
Sbjct: 133 IIIHQPTDRTLYFEYDAVGYSDIAEAQYVLAKHRDYLLKTHGRVLVVGYAD---ISGSAD 189

Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321
            N  L   RA      L+  GV  + IS +S  A +   
Sbjct: 190 YNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPP 228


>gi|254294751|ref|YP_003060774.1| peptidoglycan-associated lipoprotein [Hirschia baltica ATCC 49814]
 gi|254043282|gb|ACT60077.1| peptidoglycan-associated lipoprotein [Hirschia baltica ATCC 49814]
          Length = 181

 Score = 39.5 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
            +D            VL +    L     V I I G+ D    R     N  L   RA +
Sbjct: 74  FYDVDQYSLDDADRQVLARQAAWLNTYPGVSILIAGNCDE---RGTREYNIALGERRAAA 130

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANR 332
           A   LM  GVS  RI  +S +   R         +   NR
Sbjct: 131 AKDYLMGLGVSAARIETVS-YGKERPTDPRSTTEAWSVNR 169


>gi|170280279|gb|ACB12042.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 229

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 186 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 228


>gi|167888787|gb|ACA09703.1| outer membrane protein A [Acinetobacter baumannii 3909]
 gi|261599781|emb|CAP16951.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 229

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 186 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 228


>gi|269123996|ref|YP_003306573.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268315322|gb|ACZ01696.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 1411

 Score = 39.5 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 24/145 (16%)

Query: 163  LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            +EK +    +     + K   L  K  KR+ +L KK+       + ++ +       T  
Sbjct: 1252 IEKEVIVNNDEVNNSIVKLNELNNKLNKRIDELEKKLKEFEDIKMNEDDL------YTLD 1305

Query: 223  GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNI 280
            G  + I                      +L+ I   L  +     I I G+TD     + 
Sbjct: 1306 GYRLGIH-------------ELTKSQEEMLKNIVRELNENYKNRKIYITGYTDNV---SG 1349

Query: 281  ARDNWRLSLDRAYSAYQVLMKSGVS 305
               N  L L RA    + L + G+ 
Sbjct: 1350 ENLNLELGLKRANVVAKKLRELGLD 1374


>gi|298369577|ref|ZP_06980894.1| cytochrome c oxidase, subunit II [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282134|gb|EFI23622.1| cytochrome c oxidase, subunit II [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 159

 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 17/107 (15%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    S         L+ +   +  + +   + G  D +        N  LS  RA++  
Sbjct: 66  FASGKSDLAAGAEDALKDVLAGVK-AGKKAVVSGFHDKT---GNQALNEELSKQRAFAVK 121

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN----SANRRIDILVE 339
             LM  GV+E++I          L+  SD       +  RR+++++E
Sbjct: 122 NALMGLGVAENQI---------ELRKPSDSEGSGSKAEARRVEVVLE 159


>gi|253990922|ref|YP_003042278.1| outer membrane protein [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782372|emb|CAQ85536.1| Putative outer membrane protein [Photorhabdus asymbiotica]
          Length = 250

 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  + S    +    L  + + L+      ++I G  D+         N  L+  RA S
Sbjct: 149 LFPVNESQLTSKGKATLLVVIKELSSIPVSEMTIYGIADS---SGNYPMNKVLANKRAES 205

Query: 295 AYQVLMKSGVSE 306
             Q L++ G+ +
Sbjct: 206 VRQFLIEEGLRD 217


>gi|258405411|ref|YP_003198153.1| hypothetical protein Dret_1287 [Desulfohalobium retbaense DSM 5692]
 gi|257797638|gb|ACV68575.1| protein of unknown function DUF748 [Desulfohalobium retbaense DSM
           5692]
          Length = 1080

 Score = 39.1 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA--- 292
           F    +         LQ + E L       I + G  D++  R   RD       RA   
Sbjct: 903 FAPGRADLTDMARTKLQTVAEALKKRPRLQIDLTGLVDSAADRQAMRD-------RAFDN 955

Query: 293 ---YSAYQVLMKSGVSEDRISKISGFAHHR 319
               + Y+ L ++GV+   I  +S F    
Sbjct: 956 RIKGAKYRELEQAGVAPQDIGAVS-FGDQE 984


>gi|296160425|ref|ZP_06843242.1| cytochrome c oxidase, subunit II [Burkholderia sp. Ch1-1]
 gi|295889406|gb|EFG69207.1| cytochrome c oxidase, subunit II [Burkholderia sp. Ch1-1]
          Length = 538

 Score = 39.1 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TDA      A  N +L+  RA + 
Sbjct: 442 FDTGKSTLPADAKAAVEAAAAYAKAHPDAKFTLSGFTDA---SGSADLNAKLAKSRAEAV 498

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G +  +            RR+ I
Sbjct: 499 RDALKAAGIAEDHIILKKPETITGGSDAKEA----------RRVQI 534


>gi|114569667|ref|YP_756347.1| hypothetical protein Mmar10_1116 [Maricaulis maris MCS10]
 gi|114340129|gb|ABI65409.1| hypothetical protein Mmar10_1116 [Maricaulis maris MCS10]
          Length = 375

 Score = 39.1 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 31/237 (13%)

Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165
           I  ++ D        +                             +++        D   
Sbjct: 157 IRGDATDAGARDAVARYASANFPGGADTDLTLVPGGSASPDWEEAAKRLLGQLARLDRGA 216

Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225
            + + E   L   +    +A    + LQ +     +      A    +  + +      +
Sbjct: 217 LVLRGEQGALVGEASNPQIARSVTQTLQAMPTPFRAATVITPAGAPAEVRVEDVAACSAV 276

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285
           I        P F+++ + P P T V L+++G + A   +  ++                 
Sbjct: 277 ILAAQGTEMPRFERAGATPSPFTSVALRRVGRMFAACPDDAALT---------------- 320

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
                   S  +    + + E RI+ ++G       + +  + + N R+ +++ DRQ
Sbjct: 321 -------VSVRRSADDAELDEARIAAVTG------LVTN--VTAENPRVFVVLTDRQ 362


>gi|109675218|gb|ABG37058.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 241

 Score = 39.1 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 198 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 240


>gi|193216227|ref|YP_001997426.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089704|gb|ACF14979.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 360

 Score = 39.1 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 224 ILISIIDQRNTPMFDKSSSIP----LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279
           +++ + +  N  +F    +        +       +  +L      I I GH D    R 
Sbjct: 200 LIVEVPELSN-ILFAYDRANIDASAQAQFQKNQDSLKTLLDDPDINIVIEGHCD---VRG 255

Query: 280 IARDNWRLSLDRAYSA-YQVLMKSGVSED-RISKIS----GFAHHRLKIAS 324
               N+ L   RA +A  Q++ +  +S++ R  K+       A+++ ++  
Sbjct: 256 DNSYNYELGAKRANNAWLQLVERFNLSDEYRRFKVVSFGKAKANYKPRVPE 306


>gi|295105094|emb|CBL02638.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Faecalibacterium prausnitzii SL3/3]
          Length = 392

 Score = 39.1 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 231 QRNTPMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
                 F   S+  L E      L  + E L  ++    I   + A            LS
Sbjct: 268 SAEQVAFQPDSTAFLDEAAARAALNGLAEQLKGTSAAHYIVAGSTAQVDNASREGAQALS 327

Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
           L RA +   VL+++GV  DR + + G  +             NR
Sbjct: 328 LARAQAVRDVLVEAGVPADRFTCL-GLGN-EPTSVRSANEPENR 369


>gi|167966448|gb|ACA13273.1| outer membrane protein A [Acinetobacter baumannii]
          Length = 229

 Score = 39.1 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275
              FD + S    +    + K+ E L+        I GHTD +
Sbjct: 186 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT 228


>gi|315616919|gb|EFU97535.1| uncharacterized protein yfcI [Escherichia coli 3431]
          Length = 300

 Score = 39.1 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-----TPM 236
           +I+  +R   L  L K I       + D + + V+ E +   + I I    N     +P 
Sbjct: 169 EIMNHRRMAALTLLMKHIRHRDMMELLDKLPQ-VMVEISDEQVRILIHYIVNAGDSVSPE 227

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F ++ +  LP+    L  I E L          G  + +             L++A +  
Sbjct: 228 FMRALAERLPQHEDKLMTIAERLEQKGRQ---EGRMEGA-------------LEKALAVA 271

Query: 297 QVLMKSGVSEDRISKISGFAHHRLK 321
             L K G++ ++I + +G +   LK
Sbjct: 272 CQLQKMGMTPEQIKQATGLSDDELK 296


>gi|254474599|ref|ZP_05087985.1| OmpA/MotB [Ruegeria sp. R11]
 gi|214028842|gb|EEB69677.1| OmpA/MotB [Ruegeria sp. R11]
          Length = 518

 Score = 39.1 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
           +    +    +   LA  I++  + +  + + + V        +  S         F+  
Sbjct: 362 QAPERISMNAQGDRLANAIAAAGTEVPLEELQRLVNRLAGLQRLTTSFR-------FEPG 414

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
           S+ P  ++   +Q++   L             G +D       A  N  +++ RA S   
Sbjct: 415 STRPDAQSRSNIQQLARALEAGAYDARELLFVGFSDG---DGGAAANQSIAMKRAESVRD 471

Query: 298 VLMKSG----VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
            ++ +     +    I  +  F         D       NRR+++ V
Sbjct: 472 AVIAAAETANIDRTEI-AVEAFGEALPMACDDQRWGRQVNRRVEVWV 517


>gi|196232100|ref|ZP_03130955.1| hypothetical protein CfE428DRAFT_4121 [Chthoniobacter flavus
           Ellin428]
 gi|196223822|gb|EDY18337.1| hypothetical protein CfE428DRAFT_4121 [Chthoniobacter flavus
           Ellin428]
          Length = 304

 Score = 39.1 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 49/281 (17%)

Query: 62  KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121
              +   F P  + +++  KG  +  + P  + Q     +     + NS     G TN  
Sbjct: 62  LAGVAFAFYPPLRGMISKGKGHQEASDRPASTDQPSSTDNTPATPSSNSSSTPAGETNST 121

Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181
                 +                      +E    +     +E  ++++EN  +      
Sbjct: 122 TPSTTHDTTSSAP---------------VAEPPATVTSPQRIEMDLSQQENKTVKAEVLT 166

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241
           ++  M                +SG   D +   V  +  + G +I+I        F    
Sbjct: 167 RVDQMP--------------NISGGNKDKLYMAVE-KARKMGKIITIP-------FGSGK 204

Query: 242 SIPLPETIVVLQ------KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           +      I  L+      +I  +    T V  I G+ D    +  A+ N  +S  RA S 
Sbjct: 205 TELTATDIQQLKAELEKPEIVSLRGDPTAVFVILGYADP---KGDAKKNITISESRADSV 261

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
            +++         +    G    +L  A +     NR ++I
Sbjct: 262 RKIMKDK-CDVINVMHTVGMGGSKLLDAHN--LEKNRIVEI 299


>gi|162147532|ref|YP_001601993.1| hypothetical protein GDI_1748 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545637|ref|YP_002277866.1| hypothetical protein Gdia_3528 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786109|emb|CAP55691.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533314|gb|ACI53251.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 124

 Score = 39.1 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 24/111 (21%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD---- 290
            F + S       + V+    +  A     VI++ G+  A            LS D    
Sbjct: 27  FFTRDSVKLEDPALWVVTHAAQQAARDPQSVITVEGYAAAHG---------DLSADALLA 77

Query: 291 --RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338
             RA      L+  GV+  RI +         +  S+   +  +RR++I +
Sbjct: 78  VDRAKKVASQLVADGVAAGRIRQ-------MPRAPSNEDGAVGSRRVEIEI 121


>gi|126665505|ref|ZP_01736487.1| hypothetical protein MELB17_22970 [Marinobacter sp. ELB17]
 gi|126630133|gb|EBA00749.1| hypothetical protein MELB17_22970 [Marinobacter sp. ELB17]
          Length = 911

 Score = 39.1 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT-DASPFRNIARDNWRL 287
           +Q     F          +   L  + +VL    E+I SIRG           A+    L
Sbjct: 803 EQMQQVSFAPGGVELTEASTQKLAALAQVLNQKPELILSIRGAVAPEVDTGAGAQSPGAL 862

Query: 288 SLDRAYSAYQVLMK-SGVSEDRIS 310
           +  RA +  Q+L+   GV+  +I 
Sbjct: 863 ADSRAMALRQLLVNTHGVNPKQIF 886


>gi|123442800|ref|YP_001006777.1| methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089761|emb|CAL12614.1| methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 545

 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I +    +    +L  W    A  M + MA   ++W+         K +  +F+   K 
Sbjct: 175 VIAEAGTQNQQAYHLAMWIFAGAILMVIAMAISSLIWL-RTMFVSPLKTMRSHFDRIAKG 233

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++A   +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 234 DLSAQISVT-GRNEISQMFASLRTMQQSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 292

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +   +         +K   LA      + D+
Sbjct: 293 TEQQAASLEQTAASMEQLTATVKQNADNARQATQLAQDASGTAAKGGELAGSVVTTMHDI 352

Query: 196 A 196
           A
Sbjct: 353 A 353


>gi|86146740|ref|ZP_01065060.1| hypothetical protein MED222_15379 [Vibrio sp. MED222]
 gi|85835390|gb|EAQ53528.1| hypothetical protein MED222_15379 [Vibrio sp. MED222]
          Length = 236

 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 22/189 (11%)

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             +  +  EK +       + +   +I   L      +  K  +       + I    + 
Sbjct: 38  ALMNRIDVEKRVIKAMDITISEAQVRIHQALEKEFTQDFDKWQVELAADKSLSIDFYAKP 97

Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVIS---IRGHTDAS----PFRNIA 281
               F  S S   P  +  L+        VL    + I    I GHT +           
Sbjct: 98  YH--FVSSESELSPALLSTLKVFFPRYINVLEQYQDDIQAIQIEGHTSSYWEGLNSFEAY 155

Query: 282 RDNWRLSLDRAYSAYQ-------VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332
           + N  LS +RA + ++       +L + G    +     G+   +L+  +     +S +R
Sbjct: 156 KQNMMLSQNRASAVFEKVVNFDGILEQHGSWVMKKLAALGYGPAQLRFHATGKEDSSRSR 215

Query: 333 RIDILVEDR 341
           R+   V  +
Sbjct: 216 RVSFKVITK 224


>gi|218709364|ref|YP_002416985.1| hypothetical protein VS_1373 [Vibrio splendidus LGP32]
 gi|218322383|emb|CAV18536.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 218

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262
           + G+      +G+  +       ISI D     +FD +           L+K   + + +
Sbjct: 59  IKGINDKLNAEGIGVQADPETGDISITDS---ILFDLNDYKLKASGQEFLEKFIPIYSDA 115

Query: 263 ----------TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
                        + I GH+ +         N  LS+ RA S 
Sbjct: 116 IFQSQATADEVSRVVIEGHSSSE---GAFDRNMELSVLRANSV 155


>gi|225869058|ref|YP_002745006.1| collagen and fibronectin-binding collagen-like cell
           surface-anchored protein FneE [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702334|emb|CAX00145.1| putative collagen and fibronectin-binding collagen-like cell
           surface-anchored protein FneE [Streptococcus equi subsp.
           zooepidemicus]
          Length = 731

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 40/154 (25%), Gaps = 3/154 (1%)

Query: 73  GKNLMTASKGI---FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
           GK+     KG      +Q  P        D    E   +     +     Q  Q +R E 
Sbjct: 394 GKDGQPGPKGEKGDPGQQGIPGPKGDPGHDGKDGEKGERGEQGPQGERGEQGPQGERGEQ 453

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   Q  +  +       E+G+   +    E+    E     P   + +      +
Sbjct: 454 GPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQGER 513

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
                  ++      G   +   +G   E    G
Sbjct: 514 GEQGPQGERGEQGPQGERGEQGPQGERGEQGPRG 547


>gi|89076000|ref|ZP_01162369.1| probable peptidoglycan-associated lipoprotein precursor
           [Photobacterium sp. SKA34]
 gi|89048291|gb|EAR53871.1| probable peptidoglycan-associated lipoprotein precursor
           [Photobacterium sp. SKA34]
          Length = 174

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD             L    ++L+ +    +++ G  D+      A+ N +L+L RA   
Sbjct: 58  FDFDKHDLQMSEQSQLDLASKILSDNPRYRVAVIGSADSM---GGAKYNDKLALKRAKVV 114

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRIDILVE 339
                  G+   R+  +S  +  +  ++ D  +N  NRR  +++ 
Sbjct: 115 ADYFFSKGIDRSRMVTLSSGSREQFIVSKDREVNRVNRRAQLILL 159


>gi|332161306|ref|YP_004297883.1| methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605224|emb|CBY26722.1| methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor
           protein) [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325665536|gb|ADZ42180.1| methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 545

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I +    +    +L  W    A  M + MA   ++W+         K +  +F+   K 
Sbjct: 175 VIAEAGTQNQQAYHLAMWIFAGAILMVIAMAISSLIWL-RTMFVSPLKTMRSHFDRIAKG 233

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++A   +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 234 DLSAQISVT-GRNEISQMFASLRTMQQSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 292

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +   +         +K   LA      + D+
Sbjct: 293 TEQQAASLEQTAASMEQLTATVKQNADNARQATQLAQDASGTAAKGGELAGSVVTTMHDI 352

Query: 196 A 196
           A
Sbjct: 353 A 353


>gi|311696161|gb|ADP99034.1| OmpA/MotB domain protein [marine bacterium HP15]
          Length = 419

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F +  +    +    LQ++ + L  +    + + + G  D       A+    +S  RA 
Sbjct: 320 FSEGRTKLDNKARRDLQRVQQYLNQNGRSADDLLLIGFADTQSHELRAQ---MISELRAL 376

Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341
           S  + L +  V +      +G+  +     S   +  N R+++ ++ R
Sbjct: 377 SVRKALQEVNVPD---VAYTGYGQYMPVGGS--GSPRNGRVEVWIKSR 419


>gi|120613375|ref|YP_973053.1| hypothetical protein Aave_4747 [Acidovorax citrulli AAC00-1]
 gi|120591839|gb|ABM35279.1| hypothetical protein Aave_4747 [Acidovorax citrulli AAC00-1]
          Length = 163

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + +   PE + +L  +    + + +   I+G++D    +N       ++L RA +  
Sbjct: 77  FSGTDTALPPEALALLDVVAADKSSAAQRWEIKGYSDRKAAKNAR----EIALARALAVR 132

Query: 297 QVLMKSGVSEDRI 309
           + L+  G+    +
Sbjct: 133 KELVARGIPAQNL 145


>gi|156537071|ref|XP_001602080.1| PREDICTED: similar to hepatoma-derived GF, putative [Nasonia
           vitripennis]
          Length = 564

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 17/234 (7%)

Query: 75  NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134
               ++ G  D  N        K  +    +I   + D  +    +K+  + +   +   
Sbjct: 129 AAPASTDGEADTGNLVIDEGDKKKAMKRKSYIPPGTPD--VSDAKKKRGRKSMATILAEN 186

Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
           +  Q + H       + +      +    ++  + +    +     E     + K ++++
Sbjct: 187 TPKQDTAHDSQDEDSEKKNVSRSGRKIKPKRFHDSDAEVTIESSKIEPTDRRRTKIKVEE 246

Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVL 252
             +   S ++ +     V+    +     +L+S  I+D R +P            +  +L
Sbjct: 247 SNENQESPITPIKKRMSVESTKVDEQDDDMLLSESIVDARASP----------GYSGRLL 296

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR-AYSAYQVLMKSGVS 305
             +   L      I +  +          R  W LS+ R A    + L    ++
Sbjct: 297 --VAHTLDGLPVGIKLDVNRPDRFESEAERARWDLSVARNAMRLKEQLESGDIA 348


>gi|328469634|gb|EGF40570.1| putative outer membrane protein [Vibrio parahaemolyticus 10329]
          Length = 282

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +       +   L ++ + L +     + I G  D+         N  L+  RA +
Sbjct: 178 LFPVNEYELTQASKETLLQLIQKLKNLPVKELVIYGIADS---SGSYAKNRVLADRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L++ G+    I  I G   + L+ A        RR  I
Sbjct: 235 VRDFLVEEGLRNVSI-AIRGTVENGLETAE--QRVKQRRFSI 273


>gi|221271472|dbj|BAH15024.1| putative outer membrane protein [Vibrio parahaemolyticus]
          Length = 282

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F  +       +   L ++ + L +     + I G  D+         N  L+  RA +
Sbjct: 178 LFPVNEYELTQASKETLLQLIQKLKNLPVKELVIYGIADS---SGSYAKNRVLADRRALA 234

Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
               L++ G+    I  I G   + L+ A        RR  I
Sbjct: 235 VRDFLVEEGLRNVSI-AIRGTVENGLETAE--QRVKQRRFSI 273


>gi|238023265|ref|ZP_04603691.1| hypothetical protein GCWU000324_03192 [Kingella oralis ATCC 51147]
 gi|237865648|gb|EEP66788.1| hypothetical protein GCWU000324_03192 [Kingella oralis ATCC 51147]
          Length = 176

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNI 280
            I++            ++  LPE    L ++ E L    AH    I++ GHTD       
Sbjct: 49  RINLSADALLRFNQSDAADMLPEGKATLDRLPENLVSCQAHIDG-IALTGHTDRL---GS 104

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            + N+ L L RA +    L   GV       ++     +    +
Sbjct: 105 EQYNYNLGLQRAQTVKNYLQGKGVQAP--ISVASAGESQPVTTA 146


>gi|238897463|ref|YP_002923140.1| outer membrane protein 3a (II*;G;d) [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|188474314|gb|ACD49741.1| outer membrane protein A [Candidatus Hamiltonella defensa]
 gi|229465218|gb|ACQ66992.1| outer membrane protein 3a (II*;G;d) [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 365

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNW 285
            + ++  +F  +      E    L K+   LA+       +++ G +D        + N 
Sbjct: 228 FELKSDVLFGFNQWTLKKEGGEELNKLYSKLANVNPQEGSVTVLGFSDRI---GGDKYNQ 284

Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            LS  RA S    L+  G+S D    I G         S
Sbjct: 285 LLSQKRAQSVADYLISKGISSDTPFVIKGLGKSNPVTGS 323


>gi|330993557|ref|ZP_08317492.1| hypothetical protein SXCC_03456 [Gluconacetobacter sp. SXCC-1]
 gi|329759587|gb|EGG76096.1| hypothetical protein SXCC_03456 [Gluconacetobacter sp. SXCC-1]
          Length = 124

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD----- 290
            F ++S+        V+ +  +    S   + + G+  AS           LS D     
Sbjct: 27  FFTENSTQLDTPAQTVITQAAQRAVASHANVRVEGYAAASH---------DLSADELLAI 77

Query: 291 -RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
            RA    + L+  GV   RI +       R  + ++    A+RR++I V
Sbjct: 78  DRAKVVARQLVVDGVDTSRIRQ-----QPRGPMNNESGALASRRVEIEV 121


>gi|126736197|ref|ZP_01751940.1| OmpA domain protein [Roseobacter sp. CCS2]
 gi|126714363|gb|EBA11231.1| OmpA domain protein [Roseobacter sp. CCS2]
          Length = 564

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 27/188 (14%)

Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219
           S   +  + +   + L  +   + LA           ++I   +   +A  +        
Sbjct: 394 SPAADPYVAESGYFSLGIVEDNRALARLTDAAFIGQPREIGRAVQNQIATELPGANRLSL 453

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASP 276
           T                F     +   +    L ++ E ++        +   G  D+  
Sbjct: 454 TFR--------------FPTDVFVLDSKGQRDLDRLVEFMSRPENANRELIFVGFADSV- 498

Query: 277 FRNIARDNWRLSLDRAYSAYQVLM----KSGVSEDRISKISGFAHHRLKIASDP--MNSA 330
                  N +LS DRA    Q +        +   R+S + G +       +D     S 
Sbjct: 499 --GQYVYNTQLSRDRAQQVLQQVRNHPNAGPLRSTRMSTV-GLSEAAPVSCNDDAYGRSR 555

Query: 331 NRRIDILV 338
           NRR+++ V
Sbjct: 556 NRRVEVWV 563


>gi|149923536|ref|ZP_01911937.1| OmpA family protein [Plesiocystis pacifica SIR-1]
 gi|149815605|gb|EDM75136.1| OmpA family protein [Plesiocystis pacifica SIR-1]
          Length = 286

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
            F   S    P+T   LQ   + +A    ++ +  H D    R     N  L+  R    
Sbjct: 187 FFGFDSPKLSPDTQQQLQAAAQCIADQGRLVYLESHADP---RGTEEYNILLTDKRGQGV 243

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337
            + L+  GV  + + ++        +   D   + +RR++ +
Sbjct: 244 KKFLVDLGVPPENM-QVISKGSLEARGTDDSTYADDRRVEFV 284


>gi|167643943|ref|YP_001672041.1| hypothetical protein pTer331_15 [Collimonas fungivorans]
 gi|166863235|gb|ABZ01491.1| hypothetical protein [Collimonas fungivorans Ter331]
          Length = 186

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++  +LA +   I +RG TD            +++L+RA +A + L+  GVS   I  +
Sbjct: 101 AQLLPLLAKA-RRIEVRGRTDGQRPSTADE---KIALNRALAAQRFLIGQGVSPA-IISV 155

Query: 313 SGF--AHHRLKIASDPMNSANRRIDILVEDR 341
           +      +     S    S NRR+DI V ++
Sbjct: 156 NYVSAGDYVADNFSAVGRSLNRRVDIEVFNQ 186


>gi|254966498|gb|ACT97225.1| TraQ [Synthetic plasmid pMOL98]
          Length = 186

 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312
            ++  +LA +   I +RG TD            +++L+RA +A + L+  GVS   I  +
Sbjct: 101 AQLLPLLAKA-RRIEVRGRTDGQRPSTADE---KIALNRALAAQRFLIGQGVSPA-IISV 155

Query: 313 SGF--AHHRLKIASDPMNSANRRIDILVEDR 341
           +      +     S    S NRR+DI V ++
Sbjct: 156 NYVSAGDYVADNFSAVGRSLNRRVDIEVFNQ 186


>gi|58038713|ref|YP_190677.1| hypothetical protein GOX0238 [Gluconobacter oxydans 621H]
 gi|58001127|gb|AAW60021.1| Hypothetical protein GOX0238 [Gluconobacter oxydans 621H]
          Length = 255

 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286
           + D     +F   S     +++  LQ  G  L+H  E  + +  +  A P  +++    R
Sbjct: 136 LPDGGMRVLFPSGSEALNADSLKALQDYGTELSHHPEQRVVLMAY-AALPGDDVSMPR-R 193

Query: 287 LSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340
           ++L RA +   + + +GV+  R+  +  G         +D       R+D+++E 
Sbjct: 194 IALARALAVRSIFIHAGVATTRLYPRALGRPDAGDTAPAD-------RLDVVIET 241


>gi|269124147|ref|YP_003306724.1| YadA domain-containing protein [Streptobacillus moniliformis DSM
            12112]
 gi|268315473|gb|ACZ01847.1| YadA domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 2078

 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI----LISIIDQRNTPM--FDK 239
            +++ ++L +  KK+      L  +N   G   +  R  I     I + +     +  +  
Sbjct: 1917 IEQNEKLINQNKKLEEDNDRLRRENDRIGDEIKELRERIKAIEKIKMNEDDLYTLDGYRL 1976

Query: 240  SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                       +L  I   L  +     I I G+TD     +    N  L L RA    +
Sbjct: 1977 GIHELTSSQEEMLMNIVRELNENYKNRKIYITGYTDNV---SGEDLNLELGLKRANVVAK 2033

Query: 298  VLMKSGVS 305
             L + G+ 
Sbjct: 2034 KLRELGLD 2041


>gi|17552206|ref|NP_498394.1| Temporarily Assigned Gene name family member (tag-182)
           [Caenorhabditis elegans]
 gi|74962634|sp|Q18034|NFX1_CAEEL RecName: Full=Transcriptional repressor NF-X1 homolog
 gi|1109825|gb|AAB47595.1| Temporarily assigned gene name protein 182 [Caenorhabditis elegans]
          Length = 1119

 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           FNP       A   +FD   PP         +    H  +NS   +     +++  Q+  
Sbjct: 88  FNPNAATFNPAQSVLFDPSVPPPT-------IGASTHSNQNSRQQEPSQNRRRRGGQQNT 140

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
                    Q+ +    + +R + + +        +++ + +     P  S+    A +R
Sbjct: 141 QRRQLEIQEQRGDSHPQNQSRQNNRNQLNVDRIANQQNKSVQNPSRNPGNSRRGQGARRR 200

Query: 189 KKRLQDLAKKISSTLSGLVADN 210
           +++ + L ++ +  L+      
Sbjct: 201 EQKEEPLTEEETKILADKPLRE 222


>gi|294630040|ref|ZP_06708600.1| polyketide beta-ketoacyl synthase 2 [Streptomyces sp. e14]
 gi|292833373|gb|EFF91722.1| polyketide beta-ketoacyl synthase 2 [Streptomyces sp. e14]
          Length = 426

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 20/87 (22%)

Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDR---AYSAYQVLMKSGVSEDRISKISGFA 316
                   + GHT            W LS  R   A +    L ++G + + +  +  FA
Sbjct: 263 RGVPVRARVAGHTATF----TGASRWELS--RQGLAEAIRGALAEAGCAPEEVDVV--FA 314

Query: 317 H---------HRLKIASDPMNSANRRI 334
                           +D + +  RR+
Sbjct: 315 DALGVPEADRAEALAIADALGAHGRRV 341


>gi|94967622|ref|YP_589670.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549672|gb|ABF39596.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 241

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 226 ISIIDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278
           IS+ DQ+          +D  +         VLQ              +I GH D    R
Sbjct: 122 ISLSDQQAFAKYVKDIYYDYDAYTVRAADQAVLQANANFFKQHPNIHFTIEGHCDE---R 178

Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333
                N  L  +RA +A   ++++G+    +  IS +   +     +++     NRR
Sbjct: 179 GSTEYNLALGDNRASAAKNAIVQAGIPASSVRTIS-YGKEKPFCTESNEQCWQQNRR 234


>gi|312887292|ref|ZP_07746895.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311300250|gb|EFQ77316.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 643

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASP 276
           E    G+  SI       +FD   +         L   +   +     VI I GHTD   
Sbjct: 522 EAVEKGLRFSI-------LFDFDRANSTAAYTKFLSNTVASSITDGATVI-IHGHTD--- 570

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMK----SGVSEDRISKISGFAHHR---LKIASDPMNS 329
                  N +LS +RA     +L +    +G +  +   I GF           + P   
Sbjct: 571 IIGEEDHNLKLSQERAREVQSILERALAKAGKNSVKFETI-GFGEDVSHSPFDNNLPEER 629

Query: 330 ANRRIDIL 337
              R  I+
Sbjct: 630 FYNRTVII 637


>gi|254449145|ref|ZP_05062596.1| OmpA family protein [gamma proteobacterium HTCC5015]
 gi|198261259|gb|EDY85553.1| OmpA family protein [gamma proteobacterium HTCC5015]
          Length = 397

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR---LSLDRA 292
           F         + +  + ++ + L  +    + + G +DA          WR   LS++R+
Sbjct: 297 FKPREYQLDNKALQDVDRLVDFLQKNPQYKVVLAGFSDA-----AEEAAWRSYILSMERS 351

Query: 293 YSAYQVLMKSGVSEDRISKISGFAHH--RLKIASDPMNSANRRIDILV 338
                 L+K G+     S + GF          S+     NRR+++ V
Sbjct: 352 DFVANQLIKKGIVP---SVVRGFGSTLQVASNHSEKGRDKNRRVEVWV 396


>gi|319794925|ref|YP_004156565.1| ompa/motb domain protein [Variovorax paradoxus EPS]
 gi|315597388|gb|ADU38454.1| OmpA/MotB domain protein [Variovorax paradoxus EPS]
          Length = 186

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275
           +  T   G  I +++      F   S+   P     L  + + +  S   + + G  D +
Sbjct: 71  VTVTIPDGASIRVVNGVVNFYFATGSADLAPGAAEALAAVIKGV-ESGRKVVVSGFHDTT 129

Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---- 331
                A  N  L+  RA     VL+  GV   ++          L+       S N    
Sbjct: 130 ---GDAAINESLAKKRAEMVRDVLVGLGVPAAKV---------DLQKPEVTAGSGNNAEA 177

Query: 332 RRID 335
           RR++
Sbjct: 178 RRVE 181


>gi|94500304|ref|ZP_01306837.1| chemotaxis protein MotB [Oceanobacter sp. RED65]
 gi|94427603|gb|EAT12580.1| chemotaxis protein MotB [Oceanobacter sp. RED65]
          Length = 242

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65
           + YAD MT+L A F+V++  +  + +    +
Sbjct: 1  MVSYADLMTLLFALFVVLYAASNINSEKFYEM 32


>gi|322420237|ref|YP_004199460.1| OmpA/MotB domain-containing protein [Geobacter sp. M18]
 gi|320126624|gb|ADW14184.1| OmpA/MotB domain protein [Geobacter sp. M18]
          Length = 1153

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 237  FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282
            F   S+   P+    L ++ +VL       I + G  D +      R
Sbjct: 970  FAPGSAELSPDEQGKLLRLAKVLNDRPALRIGVAGFADQAQDAEGYR 1016


>gi|16751949|ref|NP_444533.1| TraP protein [Plasmid pIPO2T]
 gi|16610017|emb|CAC82763.1| TraP protein [Plasmid pIPO2T]
          Length = 186

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
           ++  +LA++   I +RG TD            +++L+RA +A + L+  GVS   I  ++
Sbjct: 102 QLLPLLANA-RRIEVRGRTDGQRPSTADE---KIALNRALAAQRFLIGQGVSPA-IISVN 156

Query: 314 GF--AHHRLKIASDPMNSANRRIDILVEDR 341
                 +     S    S NRR+DI V ++
Sbjct: 157 YVSAGDYVADNFSAVGRSLNRRVDIEVFNQ 186


>gi|144897928|emb|CAM74792.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 195

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294
           F+   +         + ++  +   +  V+ + G   + P +   +       S DRA +
Sbjct: 103 FESG-AALSRADKAAIGEVVRLYKQTKGVVRVVGFAPS-PRQGGYQLIGGLDASQDRADA 160

Query: 295 AYQVLMKSGVSEDRISKISGFAHH 318
             + L + G+   +I  ++  A +
Sbjct: 161 VARELNRRGIPASKIM-VAAMAEY 183


>gi|123397176|ref|XP_001301042.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882169|gb|EAX88112.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 438

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 2/141 (1%)

Query: 67  QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126
            +F P     ++   G+F + N       N    +             +    ++     
Sbjct: 264 DFFFPEIDVTVSTQGGVFTKDNADTAFPYNFDPSTPTPVPEPTEEPTPVPEPKEQPSEAP 323

Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186
            E      +   +     +       +  D       EK +    N  +P  +KE +   
Sbjct: 324 TEQPSEAPTPVPEPTEQPSEAPTPVPEPTDKPTPEPTEKPVPDPTNAPVPEPTKEPVPDP 383

Query: 187 KRKKRLQDLAKKISSTLSGLV 207
             +K+   L KK  + + G+V
Sbjct: 384 DAQKK--GLTKKQKAVIGGIV 402


>gi|261417369|ref|YP_003251052.1| Thrombospondin type 3 repeat protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373825|gb|ACX76570.1| Thrombospondin type 3 repeat protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327349|gb|ADL26550.1| thrombospondin type 3 repeat protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 708

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F K +  PL  +   L  +  V+ H+ + I+I       P    ++D   LS  RA   Y
Sbjct: 606 FHKGTDKPLNSSYTALSDVVSVMRHN-KQIAIEIQCSVKP--GESKDPQALSDARATMVY 662

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI 322
           + ++  G+ E+++ + +GF     ++
Sbjct: 663 EFIVNKGIKEEKL-RANGFGLQLPQV 687


>gi|241764446|ref|ZP_04762469.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
 gi|241366139|gb|EER60722.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN]
          Length = 181

 Score = 38.3 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  + +         L  + + +A   +   + G  DA+     A  N  L+  RA++  
Sbjct: 87  FATAKAELAAGANEALADVVKGVAE-GKKAVVSGFHDAT---GDAALNAELAKQRAFAVR 142

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338
             L   GV+ED++          LK   +      N+  RR+++ +
Sbjct: 143 DALQALGVAEDKV---------ELKKPEETTATGSNAEARRVEVTL 179


>gi|254523498|ref|ZP_05135553.1| outer membrane protein [Stenotrophomonas sp. SKA14]
 gi|219721089|gb|EED39614.1| outer membrane protein [Stenotrophomonas sp. SKA14]
          Length = 294

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 21/179 (11%)

Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197
           Q++E  +      +E+ + L ++ + E    ++    L  ++ ++    +R    Q  A 
Sbjct: 120 QEAEQLRMQAQMQAEEAERLRQAAEAETLARQDAENALTSVAGKQ---QQRLSAAQQNAA 176

Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257
           K++   + LV+   + G  F+          +   N   F   +S          + + E
Sbjct: 177 KLAREEAELVSGQKLPGSKFDGRGE------VFTFNGDAFAAGASSLSSGARNQAKALAE 230

Query: 258 VLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315
            L       + I  +  A+               RA +    L+ +GV+ +RI ++SG 
Sbjct: 231 YLNIGKKGRLRIEAYDTANGVGQ----------KRAEALRDALVAAGVASNRI-QVSGK 278


>gi|218509266|ref|ZP_03507144.1| hypothetical conserved membrane protein [Rhizobium etli Brasil 5]
          Length = 356

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIAR 282
           +F  +          ++  I  VL  +      I+I GHTD  P +    
Sbjct: 277 LFQSARPELTKGFEPLVASIATVLKQNAELIGGITITGHTDNVPLQASNP 326


>gi|123230823|emb|CAM18213.1| Nik related kinase [Mus musculus]
 gi|151357815|emb|CAO77741.1| Nik related kinase [Mus musculus]
          Length = 1455

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 22/246 (8%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +     F P      T+       +  P      ++ + +   +       K     
Sbjct: 407 QQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQML 466

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEKSINKEENYFLPPL 178
           +    Q  +     +               ++E+ KDL +   + +      E       
Sbjct: 467 KSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQA 526

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           ++++ +     ++  +  ++         A    +  + +      ++ +  Q   P+  
Sbjct: 527 AEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--VVQVHAQVLLPLLS 584

Query: 239 KSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           ++  + LP      +L  +GE                           W L   RA  A 
Sbjct: 585 QNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQAWDLEASRAVGAV 627

Query: 297 QVLMKS 302
           Q L++ 
Sbjct: 628 QALIEG 633


>gi|148691955|gb|EDL23902.1| Nik related kinase [Mus musculus]
          Length = 1421

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 22/246 (8%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +     F P      T+       +  P      ++ + +   +       K     
Sbjct: 407 QQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQML 466

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEKSINKEENYFLPPL 178
           +    Q  +     +               ++E+ KDL +   + +      E       
Sbjct: 467 KSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQA 526

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           ++++ +     ++  +  ++         A    +  + +      ++ +  Q   P+  
Sbjct: 527 AEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--VVQVHAQVLLPLLS 584

Query: 239 KSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           ++  + LP      +L  +GE                           W L   RA  A 
Sbjct: 585 QNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQAWDLEASRAVGAV 627

Query: 297 QVLMKS 302
           Q L++ 
Sbjct: 628 QALIEG 633


>gi|38603523|dbj|BAD02898.1| bacteriolytic enzyme [Bacillus clausii]
          Length = 1333

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 3/215 (1%)

Query: 55   NATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114
            N  +++          P  +N  T    + + Q P   +S ++ +   D +  +   +  
Sbjct: 1102 NDAENEESNLPASEEAPSEENDSTDESSLEEPQEPETDASADEQEPETDANTDEQEPETD 1161

Query: 115  IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174
              +  Q+ +     +     +++   E        + E G     S D E  ++      
Sbjct: 1162 ASTDEQEPETDASADEQEPETDASADEQDLAEQVAEEEHGDADGTSEDQESPVSDTAENN 1221

Query: 175  LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRN 233
                + E +   +      +              D        E  T  G  I +    N
Sbjct: 1222 EADENSEPVQEEETDVADDEAEALPEEAEGPSEQDEEPSEATEEQQTTVGQKIQL--TEN 1279

Query: 234  TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268
            T +F ++SS       +      E+L   T+ + +
Sbjct: 1280 TLLFSEASSDSEQLLELFEDDTIEILEEGTDFVKV 1314


>gi|81917793|sp|Q9R0G8|NRK_MOUSE RecName: Full=Nik-related protein kinase; AltName:
           Full=Nck-interacting kinase-like embryo specific kinase;
           Short=NESK; Short=NIK-like embryo-specific kinase
 gi|6472874|dbj|BAA87066.1| Nck-interacting kinase-like embryo specific kinase [Mus musculus]
          Length = 1455

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 22/246 (8%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +     F P      T+       +  P      ++ + +   +       K     
Sbjct: 407 QQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQML 466

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEKSINKEENYFLPPL 178
           +    Q  +     +               ++E+ KDL +   + +      E       
Sbjct: 467 RSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQA 526

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           ++++ +     ++  +  ++         A    +  + +      ++ +  Q   P+  
Sbjct: 527 AEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--VVQVHAQVLLPLLS 584

Query: 239 KSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           ++  + LP      +L  +GE                           W L   RA  A 
Sbjct: 585 QNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQAWDLEASRAVGAV 627

Query: 297 QVLMKS 302
           Q L++ 
Sbjct: 628 QALIEG 633


>gi|220913109|ref|YP_002488418.1| AraC family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859987|gb|ACL40329.1| transcriptional regulator, AraC family [Arthrobacter
           chlorophenolicus A6]
          Length = 322

 Score = 38.3 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI--G 256
           +   L   VA  I + ++    R G     ID    PM    S+        ++Q +   
Sbjct: 172 VRVELGAQVASAIARDMVVPPHRDGGQAQFID---RPMPTCGSAPMEALLRWMVQNLDRE 228

Query: 257 EVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313
             +      + +   T A  FR+        W L+  R   A ++L  + ++ D +++ S
Sbjct: 229 HSVNELAARVHMSARTFARKFRSETGATPAAW-LNSQRVLRAQELLESTDLNIDEVARES 287

Query: 314 GFAHHRLK 321
           GF H  L 
Sbjct: 288 GFGHPVLL 295


>gi|225543267|ref|NP_038752.2| nik-related protein kinase [Mus musculus]
 gi|187951315|gb|AAI39032.1| Nik related kinase [Mus musculus]
 gi|187953091|gb|AAI39030.1| Nik related kinase [Mus musculus]
          Length = 1455

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 22/246 (8%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +     F P      T+       +  P      ++ + +   +       K     
Sbjct: 407 QQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQML 466

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEKSINKEENYFLPPL 178
           +    Q  +     +               ++E+ KDL +   + +      E       
Sbjct: 467 KSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQA 526

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           ++++ +     ++  +  ++         A    +  + +      ++ +  Q   P+  
Sbjct: 527 AEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--VVQVHAQVLLPLLS 584

Query: 239 KSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           ++  + LP      +L  +GE                           W L   RA  A 
Sbjct: 585 QNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQAWDLEASRAVGAV 627

Query: 297 QVLMKS 302
           Q L++ 
Sbjct: 628 QALIEG 633


>gi|126734277|ref|ZP_01750024.1| OmpA/MotB [Roseobacter sp. CCS2]
 gi|126717143|gb|EBA14007.1| OmpA/MotB [Roseobacter sp. CCS2]
          Length = 527

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F+  SS+   E+I  ++++   +         + + G  D+         N  L+ +RA 
Sbjct: 413 FNTGSSVLDVESIRNIEELAARMEAGEFDGLEVLLVGFADSV---GERARNTALAQNRAD 469

Query: 294 SAYQVLMKSGVSED-RISKISGFAHHRLKIASDPM--NSANRRIDI 336
           +   VL  +   E+ +  +   +        ++       NRR+++
Sbjct: 470 AVRNVLADTLSRENAQRLRPISYGELLPLSCNEDEVGRERNRRVEV 515


>gi|312137874|ref|YP_004005210.1| fad-dependent oxidoreductase [Rhodococcus equi 103S]
 gi|325673359|ref|ZP_08153051.1| FAD/FMN-containing dehydrogenase [Rhodococcus equi ATCC 33707]
 gi|311887213|emb|CBH46522.1| FAD-dependent oxidoreductase [Rhodococcus equi 103S]
 gi|325555949|gb|EGD25619.1| FAD/FMN-containing dehydrogenase [Rhodococcus equi ATCC 33707]
          Length = 492

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRID 335
           +   R     GF      +  +P+ +ANRRI+
Sbjct: 405 LDPGRTYVNVGFWSSVPIVPGEPVGAANRRIE 436


>gi|167950567|ref|ZP_02537641.1| Cobyrinic acid ac-diamide synthase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 202

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 303 GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338
           GV   R++ I GF  +     +  +     NRR+ +++
Sbjct: 9   GVEPKRLAAI-GFGEYHPIADNTSEAGRQKNRRVTLVI 45


>gi|111022865|ref|YP_705837.1| hypothetical protein RHA1_ro05902 [Rhodococcus jostii RHA1]
 gi|110822395|gb|ABG97679.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 173

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  ++     + V ++ +   +      I I  +   S           L+  RA +  
Sbjct: 81  FESGTAELNAVSDVTIKAVAAAMKAGDSKIEIEAYATNSDEAAAEL----LADQRAQAVA 136

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
             L   GV + RI  + G A+    +  D         +I VED
Sbjct: 137 NALEAQGVDKGRI-SVDGTANPPEGVNVDQA-------EITVED 172


>gi|258543043|ref|YP_003188476.1| hypothetical protein APA01_19730 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634121|dbj|BAI00097.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256637181|dbj|BAI03150.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256640233|dbj|BAI06195.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643290|dbj|BAI09245.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256646345|dbj|BAI12293.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256649398|dbj|BAI15339.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256652384|dbj|BAI18318.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655442|dbj|BAI21369.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 339

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 67/254 (26%), Gaps = 30/254 (11%)

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
              P R+   +  +   +  T    +       Q                +  +E     
Sbjct: 93  TTTPARTETRRRVVEKPQTTTAQKKETSSVKNTQPAATAPKNTPATKPVTTAPAETKPAP 152

Query: 147 LTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST-- 202
               +           ++  KS         PP       A     +L      +     
Sbjct: 153 APAPAPAPVAKAPPAPVQESKSATPAVQPHKPPPPATIPNAPPPLPQLTPAPSDVEVHPF 212

Query: 203 -LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261
            +      ++           G+ I+         F   ++   PET   +   G+ L+ 
Sbjct: 213 PVPPQPTVDLKAQGTVTPIEGGVRIT---------FAPEAATLNPETHQAILAFGQRLSD 263

Query: 262 STEVISIRGHTDAS--PFRNIARDNWRL----SLDRAYSAYQVLMKSGVSEDRIS-KISG 314
                    H  A    + + A D+  L    +L R  +A  VLM  G    RI  ++ G
Sbjct: 264 KP-------HVRALIDAYSSGAVDDPSLPRRMALARGLAARSVLMNGGTPSTRIYVRVIG 316

Query: 315 FAHHRLKIASDPMN 328
               +    + P +
Sbjct: 317 L--PKQSAPNTPQD 328


>gi|324017368|gb|EGB86587.1| hypothetical protein HMPREF9542_03985 [Escherichia coli MS 117-3]
          Length = 308

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-----TPM 236
           +I+  +R   L  L K I       + D + + V+ E +   + + I    N     +P 
Sbjct: 169 EIMNHRRMAALTLLMKHIRHRDMMELLDKLPQ-VMVEISDEQVRVLIHYIVNAGDSVSPE 227

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F ++ +  LP+    L  I E L         I G  +      + +         A + 
Sbjct: 228 FMRALAERLPQHEDKLMTIAERLEQKGRQEGRIEGRMEGRMEGALEK---------ALAI 278

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321
              L K G++ ++I + +G +   LK
Sbjct: 279 ACQLQKMGMTPEQIKQATGLSDDELK 304


>gi|302530159|ref|ZP_07282501.1| predicted protein [Streptomyces sp. AA4]
 gi|302439054|gb|EFL10870.1| predicted protein [Streptomyces sp. AA4]
          Length = 290

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 15/137 (10%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
                  +   + +          +     E +      S++   A +R+++LQ LAK +
Sbjct: 112 GGAIAGGVVLTTRQPPQAVTVAKPDDRFRAELDRLHRVESRDAAAAKERREQLQQLAKTL 171

Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259
           +             G     +   + +S     +  +F  +++ P       L     VL
Sbjct: 172 A-----------APGASTRISADAVTVSF----DRSLFSPNATEPNEAGQTTLTNWASVL 216

Query: 260 AHSTEVISIRGHTDASP 276
              +  I++ GH  A P
Sbjct: 217 KGQSIRITVLGHGVAVP 233


>gi|94495416|ref|ZP_01301996.1| hypothetical protein SKA58_05190 [Sphingomonas sp. SKA58]
 gi|94424804|gb|EAT09825.1| hypothetical protein SKA58_05190 [Sphingomonas sp. SKA58]
          Length = 164

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           ++ R   +F    ++        +  +    A++   + IR H   +  R+   D W L+
Sbjct: 59  VEIRAADLFMPGEALLSARGEAQIAALARRFANAP-AVEIRSHGADA--RHERFDEWDLA 115

Query: 289 LDRAYSAYQVLMKSGVSEDRIS 310
             R  +  + L   G+  DR+ 
Sbjct: 116 AARLGAVARALQARGLVRDRLL 137


>gi|285019475|ref|YP_003377186.1| hypothetical protein XALc_2715 [Xanthomonas albilineans GPE PC73]
 gi|283474693|emb|CBA17192.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 298

 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 20/172 (11%)

Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205
                +E+ + L ++ + ++   ++    L  ++ ++   +     +Q  + K++   + 
Sbjct: 132 QAQIQAEEAQSLRQAAEADQQARQDAEQALSSVAGQQTAKLS---AVQQKSAKLAREEAE 188

Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTE 264
           LV+   +    FE    G + +  D      F    +    +     + + + L   +  
Sbjct: 189 LVSGAKLPASRFE--GRGEVFTFTDAG----FGAGKAALSADAASQAKALAQYLQIGAKG 242

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316
            + I  +   +               RA +    L+  GV+  R+  +    
Sbjct: 243 RVRIEAYDADAGVAQ----------KRADALRDALVNGGVAAGRLQAVGKKG 284


>gi|145219967|ref|YP_001130676.1| OmpA/MotB domain-containing protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206131|gb|ABP37174.1| OmpA/MotB domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 167

 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327
           + GH D    R  +  N  L   RA +A + +++ GV    I  +S +   +        
Sbjct: 98  VEGHCDE---RGTSEYNIALGERRAGNAKEYMVRLGVPAASIETMS-YGEEKPFAPGHDE 153

Query: 328 NS--ANRR 333
           ++   NRR
Sbjct: 154 SAWSKNRR 161


>gi|291485635|dbj|BAI86710.1| hypothetical protein BSNT_04688 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 1059

 Score = 37.9 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 7/182 (3%)

Query: 59  DDTKKAIEQYFNPFGKNLMTASKGIFDEQ--NPPERSSQNKIDLSIDEHITK----NSVD 112
               +      N     +   S+G+ + +  NP    S++  +     +          D
Sbjct: 404 KLDLEQQRDELNNVAAEIKDISEGLKEPELNNPTMPGSEDPTNDDNTNNKNPTSGDQPTD 463

Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
              GST+   Q     NN       Q S    N L   +E       +  + +  ++ + 
Sbjct: 464 GNDGSTDDSTQMNPEINNEADNQGQQNSSEKTNDLNGKTETTAQSKAALRIIQLADENDG 523

Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232
             +     E  +++  KKRL   A++I      L           E     +   I D  
Sbjct: 524 SQVDDSKNESDISIA-KKRLNAAAEQIQKIEEELKEKQEEHNSKVEKRIEKLDKEIKDLN 582

Query: 233 NT 234
           + 
Sbjct: 583 DK 584


>gi|260591234|ref|ZP_05856692.1| putative immunoreactive antigen PG32 [Prevotella veroralis F0319]
 gi|260537099|gb|EEX19716.1| putative immunoreactive antigen PG32 [Prevotella veroralis F0319]
          Length = 360

 Score = 37.9 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288
           ID      F +       E    L  +      S   + I G   ASP  +   ++ RLS
Sbjct: 269 IDNLVFVTFAQGKYFLTNEAKKALDSV-----KSGRHVQIVG--TASPEGSKEFND-RLS 320

Query: 289 LDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKI 322
            +RA    + L   G  V E +   + G   +RL +
Sbjct: 321 QNRANIVAKYLEGRGVVVDEAKGQGVQGVTSNRLAV 356


>gi|171059943|ref|YP_001792292.1| outer membrane protein [Leptothrix cholodnii SP-6]
 gi|170777388|gb|ACB35527.1| outer membrane protein [Leptothrix cholodnii SP-6]
          Length = 155

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+   P    VL ++   L  +   ++ +    D        +D       RA + 
Sbjct: 67  FELGSAAVKPALAAVLDRLVAALKGNPRWLVQVSAPFDPRSGSFQGQD-------RASAV 119

Query: 296 YQVLMKSGVSEDRISKISGFA 316
              L+  GV+  R     G A
Sbjct: 120 RDYLVVRGVAAPRFEPPRGNA 140


>gi|167644059|ref|YP_001681722.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31]
 gi|167346489|gb|ABZ69224.1| OmpA/MotB domain protein [Caulobacter sp. K31]
          Length = 156

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F+  S+    E   VL+  G +          + G +DA      +  N  LS  RA + 
Sbjct: 50  FETESAALTNEARSVLKGAGALAKGCKVASARVIGLSDA--VGGGSNSNLALSRKRADTV 107

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336
              L K G  +    ++          +        RR DI
Sbjct: 108 KAALDKIGFRDV-AFEVGAAGDAGATTSGGEARPLRRRADI 147


>gi|238799094|ref|ZP_04642550.1| Methyl-accepting chemotaxis sensory transducer [Yersinia mollaretii
           ATCC 43969]
 gi|238717041|gb|EEQ08901.1| Methyl-accepting chemotaxis sensory transducer [Yersinia mollaretii
           ATCC 43969]
          Length = 505

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I +    +    +L  W    A  M +LMAF  ++W+         K +  +F+   + 
Sbjct: 133 VIAEAGTQNQQAYHLSMWIFGGAILMVILMAFSSLIWL-RTMFVTPLKIMRAHFDRIAQG 191

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++A   +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 192 DLSAQITVS-GRNEISQMFASLRTMQHSLISTVSHVRDGTESMLTGIQEISAGNNDLSAR 250

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +   +         +K   L       + D+
Sbjct: 251 TEQQAASLEQTAASMEQLTATVKQNADNARQATQLAQDASGTAAKGGELTSSVVTTMHDI 310

Query: 196 A 196
           A
Sbjct: 311 A 311


>gi|254462635|ref|ZP_05076051.1| OmpA/MotB [Rhodobacterales bacterium HTCC2083]
 gi|206679224|gb|EDZ43711.1| OmpA/MotB [Rhodobacteraceae bacterium HTCC2083]
          Length = 517

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293
           F   SS    +++  +Q++   +         ++  G +D       A  N  ++L RA 
Sbjct: 410 FRAGSSALDAQSLSNVQQLARAIETGVYDERSVTFVGFSDGQ---GPADGNKTIALRRAN 466

Query: 294 SAYQVLMKSG----VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338
           S    + K+     +SE  I  +  F         D       NRR++I V
Sbjct: 467 SVLAAVKKAAETVDLSELNI-SVEAFGEALPMACDDSAWGRQVNRRVEIWV 516


>gi|86739865|ref|YP_480265.1| 4-alpha-glucanotransferase [Frankia sp. CcI3]
 gi|86566727|gb|ABD10536.1| 4-alpha-glucanotransferase [Frankia sp. CcI3]
          Length = 757

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL----SLDRAYSAYQVLMKSGV 304
            ++++    ++  S        H    P    A  NWRL    S  R  +  ++L    V
Sbjct: 663 RLLVRSSCRIVLGSPGDALGDRHQPNLPGTTDAYPNWRLPVTDSAGRPVTVERLLTDPDV 722

Query: 305 -------SEDRISKISGFAHHRLKIASDPMNSANR 332
                  ++ R++++ G +        +  N  +R
Sbjct: 723 RRLGEFLAQVRVAQVRGVSSTGAASPDEDRNPISR 757


>gi|229903070|ref|ZP_04518186.1| Outer membrane protein [Yersinia pestis Nepal516]
 gi|229679980|gb|EEO76080.1| Outer membrane protein [Yersinia pestis Nepal516]
          Length = 71

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341
             + G+   R    +D     + NRR++I +  +
Sbjct: 12  FAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 45


>gi|195450933|ref|XP_002072695.1| GK13548 [Drosophila willistoni]
 gi|194168780|gb|EDW83681.1| GK13548 [Drosophila willistoni]
          Length = 1563

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 1/161 (0%)

Query: 66   EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125
              Y +   ++       +   Q PP  S+     L++ +   +++V+       ++ + +
Sbjct: 1191 ADYVDTPCQSSPNGELRLLVPQTPPPTSASASTPLALRQERVRDAVNRLDLDLEERLRDR 1250

Query: 126  RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185
            RL   +  L++S +      S+     +G  + +    +       N       KE  + 
Sbjct: 1251 RLIGQVKALNSSDKVHIRARSVHFRWHRGIKIGQGRFGKVYTAVNNNTGELMAMKEIAIQ 1310

Query: 186  MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
                + L+++A+++   L G+   N+V+    E  R  +LI
Sbjct: 1311 PGETRALKNVAEEL-KILEGIKHKNLVRYYGIEVHREELLI 1350


>gi|51103048|gb|AAT96194.1| HrpQ [Pseudomonas viridiflava]
          Length = 326

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
              I    +    ++S  L+   +  +K   R    I  L           +    +   
Sbjct: 102 PAVIPPKPEPDPVRHSAPLQKVPSRSQKLLNRTTGIIAGLLIGVIGSAWSLTRPGPTAVD 161

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            ++ +   L+++  KE        +         + RL D A  +   L+ +++D ++  
Sbjct: 162 PEVAQVAALKQTAGKEPEKPAGTPATSVREVPDTRIRLAD-ADAVRHQLNTMLSDRMLSH 220

Query: 215 VLFETTRTGILI 226
           +  + T  G+++
Sbjct: 221 ISIDETPEGLVL 232


>gi|261415554|ref|YP_003249237.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372010|gb|ACX74755.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327335|gb|ADL26536.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 205

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASP 276
              G   SI     + +F+ +S+    E   V+  +G   A +    +   + G+T    
Sbjct: 88  VENGQATSIEFPNVSSLFELASAELSSEGRAVIATVGSKFAQTNIDAASLLVEGYTCD-- 145

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311
             ++A ++  LS  RA +      K  +   +I+ 
Sbjct: 146 LGSVAYND-ELSQRRAETVKAEFSKY-IPASKITA 178


>gi|254510103|ref|ZP_05122170.1| YibQ protein [Rhodobacteraceae bacterium KLH11]
 gi|221533814|gb|EEE36802.1| YibQ protein [Rhodobacteraceae bacterium KLH11]
          Length = 512

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 12/192 (6%)

Query: 87  QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146
           +  PE S   ++   ++   T    DL   + +  ++ +    ++  L   +     +  
Sbjct: 58  ETAPEVSKAPQVAEPVEPDDTGAEADLVEVTPSGPERPEDPSGSLASLEGIELEPGARPE 117

Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
                   +    +T    S+  E      P + +  +A     + +     I+      
Sbjct: 118 AAATPSSPETPQTTTAPVVSVQTEA-----PAAPQTPVAAPEPAQPEAAPVVITDAPPPP 172

Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
             +   +  + E T    ++    Q + P    +   P PE++  ++ +          I
Sbjct: 173 EPEQTPEPQVVEATPEEQVVESAPQEDAP--QVAVVEPEPESVPEIESL-----PQENPI 225

Query: 267 SIRGHTDASPFR 278
           ++ G  D  P R
Sbjct: 226 AVEGEEDTRPVR 237


>gi|253573133|ref|ZP_04850519.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837280|gb|EES65386.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 96

 Score = 37.6 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 241 SSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299
           S+    +    +  + E L  HS   +S+ G+ D          N  LS  RA +  ++L
Sbjct: 3   SAKIQDDQQAKISSLVEYLEKHSAAKVSVTGYADKE--TGNPNINMTLSEKRAKNVIEML 60

Query: 300 MKSGVSEDRISKISGF 315
              GV  DRI  + G+
Sbjct: 61  KAKGVVADRI--VIGY 74


>gi|45190651|ref|NP_984905.1| AER045Cp [Ashbya gossypii ATCC 10895]
 gi|44983630|gb|AAS52729.1| AER045Cp [Ashbya gossypii ATCC 10895]
          Length = 1292

 Score = 37.6 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199
           SE    +    ++  ++L   T  + S+    N       K+   A K K R+  L  + 
Sbjct: 816 SEQKSTAEAGINKMNRELFNLTKEKDSLTAVMNKLQKEGEKKLQEAEKEKVRITQLLSQR 875

Query: 200 SSTLSGL---VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256
              +  L   + D   +    E    G+L  I D ++      S    +P+    L+ + 
Sbjct: 876 DRDIENLRNELQDQGTQKKKLEDEHAGLLKEIADLKSQ---CASQDSLIPKLKEKLKTLA 932

Query: 257 EVLAHSTE 264
           E L  +  
Sbjct: 933 ESLKDTQN 940


>gi|124265295|ref|YP_001019299.1| outer membrane related peptidoglycan-associated lipoprotein
           [Methylibium petroleiphilum PM1]
 gi|124258070|gb|ABM93064.1| outer membrane related peptidoglycan-associated lipoprotein
           [Methylibium petroleiphilum PM1]
          Length = 214

 Score = 37.6 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    ++     +V L K  + +  +  + + + G  DA      A  N  L+  RA + 
Sbjct: 118 FAVGQAVLPDGALVALDKAIQAVKDAPQQRVVLSGFHDA---SGAAALNAELAKARAKAV 174

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDI 336
              L+  GV   RI      A  +  +   D      RR++I
Sbjct: 175 RAALVAEGVDAARI------ALRKPDVTLGDGAAPEARRVEI 210


>gi|303229266|ref|ZP_07316061.1| conserved domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516039|gb|EFL57986.1| conserved domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 55

 Score = 37.6 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340
           S  R     Q L+ +GV  +R+  I+ G A      A+    + NRR+D+ +  
Sbjct: 2   SERRVQDVAQYLVNNGVDANRLIGIANGDAKPVATNATANGKAENRRVDVFIHR 55


>gi|209519812|ref|ZP_03268597.1| cytochrome c oxidase, subunit II [Burkholderia sp. H160]
 gi|209499755|gb|EDZ99825.1| cytochrome c oxidase, subunit II [Burkholderia sp. H160]
          Length = 535

 Score = 37.6 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           FD   S++P      V        AH     ++ G TDA+     A  N +L+  RA + 
Sbjct: 439 FDTGKSTLPADAKAAVDAAAAYAKAHPDAKFTLSGFTDAT---GSADVNAKLAKSRAEAV 495

Query: 296 YQVLMKSGVSEDRI-----SKISGFAHHRLKIASDPMNSANRRIDI 336
              L  +G++ED I       I+G    +            RR+ I
Sbjct: 496 RDALKAAGIAEDHIILKKPETITGGTDAKEA----------RRVQI 531


>gi|330950601|gb|EGH50861.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae Cit 7]
          Length = 129

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+  SS   PE +  L    + L  +   + + G+TD    R     N  L   RA +  
Sbjct: 68  FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124

Query: 297 QVLM 300
           + L+
Sbjct: 125 RYLV 128


>gi|59714403|ref|YP_207177.1| outer membrane protein [Vibrio fischeri ES114]
 gi|59482680|gb|AAW88289.1| outer membrane protein [Vibrio fischeri ES114]
          Length = 182

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 188 RKKRLQDLAKK-ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD--KSSSIP 244
           R+ ++ D+ ++ I++    + A N     L E      +IS+  +     +    S    
Sbjct: 29  REAQINDIQQETINAQSKQIAALNYKVQQLVENNFPSPMISVTPRLYQVYYPYNVSKLTV 88

Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304
            PE    + K  +        I++ G TD          + ++++ RA       + +G+
Sbjct: 89  TPELRYSILKDAK----QATRINLLGRTDGV---RPTDSDKKVAMARAMFLRDYFVHNGI 141

Query: 305 SEDRI----SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342
               I    +  + +A +     S      NRR++I +  R+
Sbjct: 142 DPTLIYVNYASATDYADN---NWSRIGRKNNRRVEIEIYPRE 180


>gi|56475701|ref|YP_157290.1| hypothetical protein ebA521 [Aromatoleum aromaticum EbN1]
 gi|56311744|emb|CAI06389.1| hypothetical protein ebA521 [Aromatoleum aromaticum EbN1]
          Length = 161

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295
           F    +++P   +  +   I  + A   +   + G  D +     A  N  ++ +R  S 
Sbjct: 66  FGVGETALPANASADLATVIAALEAAPEKKALLSGFHDET---GGAAVNAEVAKNRGLSV 122

Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-RRIDILVE 339
            + L+ +GV  +R+         R  + S   ++A  RR+++ V+
Sbjct: 123 REALLAAGVPAERVLL------RRPAVTSGGGDAAEARRVEVRVQ 161


>gi|311900408|dbj|BAJ32816.1| putative modular polyketide synthase [Kitasatospora setae KM-6054]
          Length = 4048

 Score = 37.6 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301
           + P P     L  IG++ AH    +++R     + FR +  D + L  D A    ++L +
Sbjct: 429 AAPEP---GPLLVIGDLRAH-PGQVTVR---RGAAFRRLGPDAYELRADEAGDLRRLLAE 481

Query: 302 SGVSEDRISKISGFAHHRL 320
            G   +R+  ++  A    
Sbjct: 482 LGTPPERVLHLAAPADDLP 500


>gi|194364263|ref|YP_002026873.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347067|gb|ACF50190.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 294

 Score = 37.6 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 68/210 (32%), Gaps = 20/210 (9%)

Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164
            I + +V   + +    +  +   + +   S    +   + +     +      ++  L 
Sbjct: 81  EIAETAVRTALAAREVDRLERTRSDLLIEASRRDAARARQEAEQLRMQAQMQAEEAERLR 140

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRL---QDLAKKISSTLSGLVADNIVKGVLFETTR 221
           ++   E        +    +A K+++RL   Q  A K++   + LV+   + G  F+   
Sbjct: 141 QAAEAETLARQDAENALTSVAGKQQQRLSAAQQNAAKLAREEAELVSGQKLPGSKFDGRG 200

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280
                  +   N   F   +S          + + E L       + I  +  A+     
Sbjct: 201 E------VFTFNGDAFAAGASSLSGGARNQAKALAEYLNIGKKGRLRIEAYDSANGVGQ- 253

Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310
                     RA +    L+  GV+ +RI 
Sbjct: 254 ---------KRAEALRDALVAGGVASNRIQ 274


>gi|71660946|ref|XP_817501.1| mucin-associated surface protein (MASP) [Trypanosoma cruzi strain
           CL Brener]
 gi|70882697|gb|EAN95650.1| mucin-associated surface protein (MASP), putative [Trypanosoma
           cruzi]
          Length = 428

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 13/230 (5%)

Query: 43  VLMAFFLVMW-IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101
           +L+  F V+W  I    D   + + + F P  +   T      + Q        +  D  
Sbjct: 8   LLVCAFCVLWCTIGVVADGDTEEVLEDFVPPSRADETQ-----ELQEELRGKGHSANDEQ 62

Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161
           +DE           G +   +Q    +     L     S + +       +K +      
Sbjct: 63  VDETQELQEELRGKGHSANDEQVDETQELQEELRGKGHSANDEQVDETQLQKPQKEGGGH 122

Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221
             E  +   E      L  E     +   +++   + +  T      +N    +  +   
Sbjct: 123 QAEDPLQPVERSVRAKLQSEGPRVEETGNQIEQ-EQLLRGTQRNPNVENKTPTMPVD-KP 180

Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
            G      D       +K           + +++    A + E ISI GH
Sbjct: 181 QG-----SDGEGDVSNEKEKQKVKETISQIKEEVVAPGAGTPEAISIEGH 225


>gi|58616261|ref|YP_195390.1| OmpA family protein [Azoarcus sp. EbN1]
 gi|56315722|emb|CAI10366.1| OmpA family protein [Aromatoleum aromaticum EbN1]
          Length = 201

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
            I + G TD  P    + ++ RL+  RA S   +    G+ + ++  +S          +
Sbjct: 127 KIRLIGRTD--PIGTNSYND-RLAYKRAASVASLFKLKGMKQSQMELVS-LGARSPIAPT 182

Query: 325 DPM--NSANRRIDILVEDRQ 342
           D       NR++  L+E R+
Sbjct: 183 DTESGRQKNRQV--LIELRK 200


>gi|289676831|ref|ZP_06497721.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5]
          Length = 144

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269
            +K   F+  R   L++I    ++       ++ LP T+  + ++ +V+       + I 
Sbjct: 34  AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 93

Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323
           GH D          N ++S +RA S   +   SG+  +R+S+  G      + A
Sbjct: 94  GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAA 143


>gi|56964861|ref|YP_176592.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16]
 gi|56911104|dbj|BAD65631.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16]
          Length = 1398

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 3/200 (1%)

Query: 70   NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            +         +    DEQ P   +S ++ +   D    +   +    +  Q+ +     +
Sbjct: 1182 DASTDEQEPETDASADEQEPKTDASTDEQEPETDASTDEQEPETDASADEQEPETDANTD 1241

Query: 130  NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                 +++   E        + E G     S D E  ++          + E +   +  
Sbjct: 1242 EQEPETDASADEQDLAEQVAEEEHGDADGTSEDQESPVSDTAENNEADENSEPVQEEETD 1301

Query: 190  KRLQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPET 248
                +              D        E  T  G  I +    NT +F ++SS      
Sbjct: 1302 VADDEAEALPEEAEGPSEQDEEPSEATEEQQTTVGQKIQL--TENTLLFSEASSDSEQLL 1359

Query: 249  IVVLQKIGEVLAHSTEVISI 268
             +      E+L   T+ + +
Sbjct: 1360 ELFEDDTIEILEEGTDFVKV 1379


>gi|91791046|ref|YP_551997.1| hypothetical protein Bpro_5238 [Polaromonas sp. JS666]
 gi|91700926|gb|ABE47099.1| hypothetical protein Bpro_5238 [Polaromonas sp. JS666]
          Length = 437

 Score = 37.2 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F   ++   P+    L  +   +  +T  I+I G  D+S    + +        RA +  
Sbjct: 195 FATGTAALGPQAKRALSNMSAQVKGAT-SITIVGRDDSSEKEGLEK-------ARAENLR 246

Query: 297 QVLMKSGVSEDRI 309
             L+K G+S +RI
Sbjct: 247 DALVKMGISGERI 259


>gi|46250183|gb|AAH68311.1| Nrk protein [Mus musculus]
          Length = 1045

 Score = 37.2 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 22/246 (8%)

Query: 60  DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119
              +     F P      T+       +  P      ++ + +   +       K     
Sbjct: 407 QQLQKAAGVFMPLHSQDNTSKLFPKQVEVAPYLRGAAQVVMPVLVQVEAPPQVSKAAQML 466

Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK-STDLEKSINKEENYFLPPL 178
           +    Q  +     +               ++E+ KDL +   + +      E       
Sbjct: 467 KSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLDQVPEEFQGQDRAPEQPRQGQA 526

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
           ++++ +     ++  +  ++         A    +  + +      ++ +  Q   P+  
Sbjct: 527 AEQQQIHNPVPEQPPEEDREPEQAEVQEEAVEPPQAEIEDKEPE--VVQVHAQVLLPLLS 584

Query: 239 KSSSIPLPE--TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           ++  + LP      +L  +GE                           W L   RA  A 
Sbjct: 585 QNRHVLLPLHLDRQLLIPVGEQNEEVP-----------------RAQAWDLEASRAVGAV 627

Query: 297 QVLMKS 302
           Q L++ 
Sbjct: 628 QALIEG 633


>gi|238764379|ref|ZP_04625329.1| Methyl-accepting chemotaxis sensory transducer [Yersinia
           kristensenii ATCC 33638]
 gi|238697405|gb|EEP90172.1| Methyl-accepting chemotaxis sensory transducer [Yersinia
           kristensenii ATCC 33638]
          Length = 550

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           ++    + +    +L  W    A  M ++MA   ++W+         K +  +F+   + 
Sbjct: 175 VVADAGSQNQQAYHLSMWIFGGAILMVIVMAISALIWL-RTMFVTPLKIMRAHFDRIAQG 233

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++    +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 234 DLSGQITVS-GRNEISQMFASLRTMQQSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 292

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +   +         +K   L     K + D+
Sbjct: 293 TEQQAASLEQTAASMEQLTATVKQNADNARQATQLAQEASGTAAKGGELTGSVVKTMHDI 352

Query: 196 A 196
           A
Sbjct: 353 A 353


>gi|171320543|ref|ZP_02909568.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
 gi|171094202|gb|EDT39284.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5]
          Length = 91

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-----SKISGFAHHR 319
            +++ G TD +     A  N  L+  RA +    L  +GV+ED I       I+G A  +
Sbjct: 24  KLALSGFTDKT---GSADANAELAKHRAQAVRDALKAAGVAEDHIILKKPETITGGADAK 80

Query: 320 LKIASDPMNSANRRIDI 336
                       RR++I
Sbjct: 81  EA----------RRVEI 87


>gi|119488988|ref|ZP_01621923.1| hypothetical protein L8106_19541 [Lyngbya sp. PCC 8106]
 gi|119454944|gb|EAW36087.1| hypothetical protein L8106_19541 [Lyngbya sp. PCC 8106]
          Length = 891

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 9/193 (4%)

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216
           +     L ++  K     L  ++   I       ++    K I  +    V         
Sbjct: 701 VPPDPVLVEAEVKRMTETLNQMNGISISTQYEPDQVTIEGKVIHQSDWENVTQAFENIEG 760

Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV---LAHSTE-VISIRGHT 272
             +  + + +  +       F+ +S      +  ++ KI  V   L       + I G++
Sbjct: 761 VNSVVSTLQVEPVPIATRVYFNLNSDE--FRSEDMIIKIYPVSQYLKQYPNLKVRIVGYS 818

Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332
                      N +L+L R+ +    L   G+   R++ I G       +  +  +  +R
Sbjct: 819 HPGEKTKKNSKNSKLALKRSQAVQIALESYGIDRRRMTAI-GKNERPPGVEENQPDWLSR 877

Query: 333 RI--DILVEDRQG 343
            +  +I++ + QG
Sbjct: 878 AVIFEIILPEDQG 890


>gi|322436170|ref|YP_004218382.1| hypothetical protein AciX9_2576 [Acidobacterium sp. MP5ACTX9]
 gi|321163897|gb|ADW69602.1| hypothetical protein AciX9_2576 [Acidobacterium sp. MP5ACTX9]
          Length = 227

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 20/165 (12%)

Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKS 240
           ++++R + +  K+ S L   + +  +     +     ++I +       +   + + D  
Sbjct: 35  EQEERQESVKDKLLSELQQQLKEANLDQQNIKKDGDAVVIIVPEGLMNFETGKSDLKDGG 94

Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-----IARDNWRLSLDRAYSA 295
            +        + + +     +  + + + G+TD               N  LS +R+   
Sbjct: 95  KAFLAKYIPPISKMLVSDFRNDVDSLIVEGYTDRQRAAGSSEEQGEAQNLILSQERSMKV 154

Query: 296 YQVLMKSGVSEDRI---------SKISGFAHHRLKIASDPMNSAN 331
            +  ++     D I            SG    +      P N+ N
Sbjct: 155 VEESLRDLSGPDHIPEREFFLDRLSASGRGEQQAIHQGGPENNPN 199


>gi|238758121|ref|ZP_04619301.1| Methyl-accepting chemotaxis sensory transducer [Yersinia aldovae
           ATCC 35236]
 gi|238703659|gb|EEP96196.1| Methyl-accepting chemotaxis sensory transducer [Yersinia aldovae
           ATCC 35236]
          Length = 550

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I K    +    +L  W    A  M ++MA   ++W+ N         + Q+F+   + 
Sbjct: 175 VIAKAGTQNQQAYHLSMWIFGGAILMVIVMAISSLIWLRNMFMKP-LTTMGQHFDRIAQG 233

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++    +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 234 DLSGRISVS-GRNEISQLFASLHIMQQSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 292

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +             ++   L       + D+
Sbjct: 293 TEQQAASLEQTAASMEQLTATVKQNADNARQATLLAKDASGTAARGGELTSSVVTTMHDI 352

Query: 196 A 196
           A
Sbjct: 353 A 353


>gi|296115203|ref|ZP_06833844.1| hypothetical protein GXY_05461 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978304|gb|EFG85041.1| hypothetical protein GXY_05461 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 124

 Score = 37.2 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD----- 290
            F ++S+        V+ +  +        + + G+  AS           LS D     
Sbjct: 27  FFTQNSTQLDTPAQAVISQAAQRALAHNATVRVEGYAAASK---------DLSADELLAI 77

Query: 291 -RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340
            RA    + L   GV   RI +       R  + ++    A+RR++I V  
Sbjct: 78  DRAKIVARQLAVDGVDASRIRQ-----QPRGPVNNEDGALASRRVEIEVVR 123


>gi|307578427|gb|ADN62396.1| outer membrane protein UptE [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 309

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 62/192 (32%), Gaps = 13/192 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q  Q     N++    + +++   ++   +   + +   +  +  +   + E       
Sbjct: 98  RQLDQLAGTRNDLLIEESRREAARARHEAEQLRIQSQIQAEEAERARHTAEAEAIARKNA 157

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            +      ++++    +A++ ++ L+   A+ ++ G     +R    I I     T  + 
Sbjct: 158 EQALSSIAEKQQANLSVAQQKAAQLAREEAE-LLSGAKLPPSRFDERIEIF-TLGTEAYG 215

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                        +Q + + L       + I G+   +               RA     
Sbjct: 216 GGKKRFSSSARAQIQALAQYLKIVKRGGVEIVGYGSDAVVA----------HKRAEVLLD 265

Query: 298 VLMKSGVSEDRI 309
            L+ +GV  +R 
Sbjct: 266 ALVAAGVPANRF 277


>gi|238785508|ref|ZP_04629491.1| Methyl-accepting chemotaxis sensory transducer [Yersinia bercovieri
           ATCC 43970]
 gi|238713610|gb|EEQ05639.1| Methyl-accepting chemotaxis sensory transducer [Yersinia bercovieri
           ATCC 43970]
          Length = 505

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I +    +    +L  W    A  M +LMA   ++W+      +  K +  +F+   + 
Sbjct: 133 VIAEAGTENQQAYHLSIWIFGGAILMVILMALSSLVWL-RTMFVNPLKIMSAHFDRIAEG 191

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++A   +   +N   +   +   +      T + V     S     Q     NN     
Sbjct: 192 DLSAHIDVS-GRNEISQLFASLRTMQRSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 250

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +   +         +K   L       + D+
Sbjct: 251 TEQQAASLEQTAASMEQLTATVKQNADNARQATQLAQDASGTAAKGGELTRGVVTTMHDI 310

Query: 196 A 196
           A
Sbjct: 311 A 311


>gi|182682156|ref|YP_001830316.1| outer membrane protein UptE [Xylella fastidiosa M23]
 gi|182632266|gb|ACB93042.1| outer membrane protein UptE [Xylella fastidiosa M23]
          Length = 311

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 62/192 (32%), Gaps = 13/192 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q  Q     N++    + +++   ++   +   + +   +  +  +   + E       
Sbjct: 98  RQLDQLAGTRNDLLIEESRREAARARHEAEQLRIQSQIQAEEAERARHTAEAEAIARKNA 157

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            +      ++++    +A++ ++ L+   A+ ++ G     +R    I I     T  + 
Sbjct: 158 EQALSSIAEKQQANLSVAQQKAAQLAREEAE-LLSGAKLPPSRFDERIEIF-TLGTEAYG 215

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                        +Q + + L       + I G+   +               RA     
Sbjct: 216 GGKKRFSSSARAQIQALAQYLKIVKRGGVEIVGYGSDAVVA----------HKRAEVLLD 265

Query: 298 VLMKSGVSEDRI 309
            L+ +GV  +R 
Sbjct: 266 ALVAAGVPANRF 277


>gi|28199429|ref|NP_779743.1| outer membrane protein UptE precursor [Xylella fastidiosa
           Temecula1]
 gi|28057535|gb|AAO29392.1| outer membrane protein UptE precursor [Xylella fastidiosa
           Temecula1]
          Length = 310

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 62/192 (32%), Gaps = 13/192 (6%)

Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178
            Q  Q     N++    + +++   ++   +   + +   +  +  +   + E       
Sbjct: 97  RQLDQLAGTRNDLLIEESRREAARARHEAEQLRIQSQIQAEEAERARHTAEAEAIARKNA 156

Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            +      ++++    +A++ ++ L+   A+ ++ G     +R    I I     T  + 
Sbjct: 157 EQALSSIAEKQQANLSVAQQKAAQLAREEAE-LLSGAKLPPSRFDERIEIF-TLGTEAYG 214

Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
                        +Q + + L       + I G+   +               RA     
Sbjct: 215 GGKKRFSSSARAQIQALAQYLKIVKRGGVEIVGYGSDAVVA----------HKRAEVLLD 264

Query: 298 VLMKSGVSEDRI 309
            L+ +GV  +R 
Sbjct: 265 ALVAAGVPANRF 276


>gi|165940117|ref|ZP_02228650.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165940373|ref|ZP_02228888.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165911693|gb|EDR30355.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165911940|gb|EDR30584.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis
           str. IP275]
          Length = 512

 Score = 37.2 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293
            +FD          T +++  + ++ A    +I + GHTD       A+ N  LSL RA 
Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502

Query: 294 SAYQVLMK 301
           +    ++ 
Sbjct: 503 ALRDWMLS 510


>gi|51102993|gb|AAT96140.1| HrpQ [Pseudomonas viridiflava]
          Length = 326

 Score = 36.8 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 95  QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154
              I    +    ++S  L+   +  +K   R    I  L           +    +   
Sbjct: 102 PAVIPPKPEPDPVRHSAPLQKVPSRSQKLLNRTTGIIAGLLIGVIGSAWSLTRPGPTVVD 161

Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214
            ++ +   L+++  KE        +         + RL D A  +   L+ +++D ++  
Sbjct: 162 PEVAQVAALKQTAGKEPEKPAGTPATSVREVPDTRIRLAD-ADAVRHQLNTMLSDRMLSH 220

Query: 215 VLFETTRTGILI 226
           +  + T  G+++
Sbjct: 221 ISIDETPEGLVL 232


>gi|225870909|ref|YP_002746856.1| collagen-binding collagen-like cell surface-anchored protein FneC
           [Streptococcus equi subsp. equi 4047]
 gi|225700313|emb|CAW94597.1| putative collagen-binding collagen-like cell surface-anchored
           protein FneC [Streptococcus equi subsp. equi 4047]
          Length = 628

 Score = 36.8 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 36/156 (23%), Gaps = 3/156 (1%)

Query: 71  PFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           P G+  +   K   G         +           +                 ++ +R 
Sbjct: 371 PKGEPGIPGPKDEDGKDGAPGHDGQPGPKGEKGDPGQQGIPGPKGEPGRDGKDGEKGERG 430

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
           E         Q  +  +       E+G+   +    E+    E     P   + +     
Sbjct: 431 EQGPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPQG 490

Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223
            +       ++      G   +   +G   E    G
Sbjct: 491 ERGEQGPQGERGEQGPQGERGEQGPQGERGEQGPRG 526


>gi|195145980|ref|XP_002013968.1| GL23109 [Drosophila persimilis]
 gi|194102911|gb|EDW24954.1| GL23109 [Drosophila persimilis]
          Length = 1572

 Score = 36.8 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 68/174 (39%), Gaps = 1/174 (0%)

Query: 53   IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112
            ++ +++  +      Y +   ++       +   Q PP  +S     L++ +   +++V+
Sbjct: 1187 MLQSSNAYSSVDSADYVDTPCRSSPNGELRLLVPQTPPTPASPGGTPLALRQERVRDAVN 1246

Query: 113  LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172
                   ++ + +RL   +  L++  +      S+     +G  + +    +       N
Sbjct: 1247 RLDMDLEEQLRERRLIGQVKALNSCDKVHIRARSVHFRWHRGIKIGQGRFGKVYTAVNNN 1306

Query: 173  YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
                   KE  +     + L+++A+++   L G+   N+V+    E  R  +LI
Sbjct: 1307 TGELMAMKEIAIQPGETRALKNVAEEL-KILEGIKHKNLVRYYGIEVHREELLI 1359


>gi|170745045|ref|YP_001766503.1| hypothetical protein Mrad2831_6338 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170659207|gb|ACB28260.1| VirBTraTrw family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 185

 Score = 36.8 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSA 295
           F  +S+   P    V   +  ++A     + +RG TD  +P     R    ++  RA +A
Sbjct: 84  FPWNSAQFRPTPAQV-AHLRGLIAAGVAHVQVRGRTDNPNPSSGDER----IARGRAEAA 138

Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
              L+  GV    I         +R         + NRR+DI
Sbjct: 139 KDWLIGEGVPSGIIDLNFVSAGDYRSNNRLSDGRALNRRVDI 180


>gi|238751749|ref|ZP_04613237.1| Methyl-accepting chemotaxis sensory transducer [Yersinia rohdei
           ATCC 43380]
 gi|238710020|gb|EEQ02250.1| Methyl-accepting chemotaxis sensory transducer [Yersinia rohdei
           ATCC 43380]
          Length = 545

 Score = 36.8 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 16  IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75
           +I +    +    +L  W    A  M ++MA   ++W+         K +  +F+   + 
Sbjct: 175 VIAEAGTHNQQAYHLSMWIFGGAILMVIVMAISSLIWL-RTMFVKPLKIMRSHFDRIAEG 233

Query: 76  LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135
            ++    +   +N       +   +      T + V     S     Q     NN     
Sbjct: 234 DLSGQISVS-GRNEISEMFGSLHTMQQSLITTVSHVRDGTESMLTGIQEISAGNNDLSAR 292

Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195
             QQ+   + +     +    + ++ D  +             +K   L       + D+
Sbjct: 293 TEQQAASLEQTAASMEQLTATVKQNADNARQATLLAKEASGTAAKGGELTSSVVTTMHDI 352

Query: 196 A 196
           A
Sbjct: 353 A 353


>gi|189424728|ref|YP_001951905.1| translation initiation factor IF-2 [Geobacter lovleyi SZ]
 gi|238692144|sp|B3EAE7|IF2_GEOLS RecName: Full=Translation initiation factor IF-2
 gi|189420987|gb|ACD95385.1| translation initiation factor IF-2 [Geobacter lovleyi SZ]
          Length = 949

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 65/226 (28%), Gaps = 22/226 (9%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P G       +    + +   R +    D +         V L       + + +R   
Sbjct: 236 RPTGGQDSRGPRPAGAQDSRGPRPAGPPRDAAAPRPAGARPVQLTQVDLPPQGEERRKTL 295

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                      +   +   + +       +    +  +++EE  F P     K    + +
Sbjct: 296 GPNRKPGGPAKDTAADKAKKGAAAKGKGREQLSKQALLSREERQFDPFHKSRKKGKEREE 355

Query: 190 KRLQDLA-----KKISSTLSGLVADNIVKGVLFETTR-------TGILISI---IDQRNT 234
               +L      K+I      +    + K +  + T         G +++I   +D    
Sbjct: 356 PGKTELTTPKAIKRIIKISETITIGELAKRMGIKATDLIKAMMKMGSMVTINHVLDHDAA 415

Query: 235 PMFDKS-------SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273
            +            ++ L E +       E+L     V++I GH D
Sbjct: 416 VLLASDYGYEVENVAVDLDEILEFTPDAPELLQERPPVVTIMGHVD 461


>gi|29833204|ref|NP_827838.1| 5-methylthioribose kinase [Streptomyces avermitilis MA-4680]
 gi|29610326|dbj|BAC74373.1| putative 5-methylthioribose kinase [Streptomyces avermitilis
           MA-4680]
          Length = 372

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 274 ASPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGF 315
           A P+  +A  +W +S +RA + A      +GV+ D+I  I G+
Sbjct: 39  ALPWVRVAGPSWPMSPERADAEARAYEQVAGVAPDKIPAIHGY 81


>gi|311695658|gb|ADP98531.1| OmpA family protein-like protein [marine bacterium HP15]
          Length = 202

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 187 KRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245
            R   L+ L K+    +  L    +  +  +      G  + I   R T +F  + S   
Sbjct: 51  ARLANLEALQKQNVDAIKSLSERLDRFEAAICRGDDCGRRMLI---RETVLFALNDSTLS 107

Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV----LMK 301
            +    + ++ E +     +IS+RG  DA         N+ LSL RA +  Q     L +
Sbjct: 108 EQAKDRINRLMEGVKEGA-LISLRGQADAL---GDEIYNYLLSLRRAAAVKQYLDTLLAE 163

Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338
           SG + D +  I G        + +  N A R ++IL+
Sbjct: 164 SGQTGDLLITIDGTGEALSGGSDESENPARRMVEILI 200


>gi|158315429|ref|YP_001507937.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec]
 gi|158110834|gb|ABW13031.1| OmpA/MotB domain protein [Frankia sp. EAN1pec]
          Length = 348

 Score = 36.8 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 25/192 (13%)

Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218
                E + +                      R  DL   +++ L+G             
Sbjct: 166 GHDRAEPAASTTTAPAPAASVPAPAAPAPAPARPGDLTADLAARLAGPA---------VT 216

Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277
            TR G    ++   +  +F      P PE    L  +G  LA +  V + + GH+D  P 
Sbjct: 217 ITRAGGQAVVV--FHNALFAT-HDTPTPEGRAALTALGARLAAAPGVAVEVVGHSDNLPV 273

Query: 278 R--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-------- 327
           R      DN  LSL RA SA ++L  +G+    ++ IS         A DP         
Sbjct: 274 RPGGPFPDNTALSLARAASAAEILRAAGLPAAALT-ISAAGDALAPYAGDPTGDPTGDAA 332

Query: 328 -NSANRRIDILV 338
            +  NR + + V
Sbjct: 333 GDLRNRTVTLRV 344


>gi|323137327|ref|ZP_08072405.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
 gi|322397314|gb|EFX99837.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242]
          Length = 559

 Score = 36.8 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 14/171 (8%)

Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224
            S  +E        +     A  + + L+   K+  ++L   +A +    V         
Sbjct: 389 ASQTQEMRAGETRAAATLQEAQAQIETLRAELKETRASLDRYLAQDEAPHVKLRR----- 443

Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283
                 +     F +  ++  P      L ++  ++  S   + + G+ D      + R 
Sbjct: 444 ----FVETFAVFFTELDTLSNPAATAKGLDELAGLMKASGANLRVVGYADEVGSATLNRA 499

Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334
               S  RA     +L++ GV   R++ +   +       ++     +RR+
Sbjct: 500 A---SRKRADKIVSMLVERGVPRQRLALVP-RSTLDPIADTEFDAIRSRRV 546


>gi|212529044|ref|XP_002144679.1| DNA damage repair protein Mus42, putative [Penicillium marneffei ATCC
            18224]
 gi|210074077|gb|EEA28164.1| DNA damage repair protein Mus42, putative [Penicillium marneffei ATCC
            18224]
          Length = 1167

 Score = 36.4 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 5/203 (2%)

Query: 53   IINATDDDTKKAIEQYFNPFGKNL-MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111
            I+ A   D +  I  Y++    ++ + + +       PP R+      L       K   
Sbjct: 870  ILKALPKDIQSEILGYYDQPSNDMKLESPQRQHPSSPPPSRAVCAMPALKKPTTPVKKRR 929

Query: 112  DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171
                 S     +       +    N  +    ++     S    D    T++   I+++ 
Sbjct: 930  GRPPKSLANASKPVVRSGLMQSSFNFSRPRTAESDTIDRSPSVPD----TEMTSEISQDF 985

Query: 172  NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231
               LP   + ++L   R++ ++  +  ++      VA          T  T   I +  +
Sbjct: 986  LAALPEDIRAEVLEQHRQEHMRQRSNLVAPVQRKSVASRPSTPAETSTATTEKRIQLSPR 1045

Query: 232  RNTPMFDKSSSIPLPETIVVLQK 254
               P F       LP+    +  
Sbjct: 1046 PERPAFTSKKLTTLPDLREAITA 1068


>gi|261342830|ref|ZP_05970688.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter cancerogenus ATCC
           35316]
 gi|288314872|gb|EFC53810.1| N-acetylmuramoyl-L-alanine amidase [Enterobacter cancerogenus ATCC
           35316]
          Length = 448

 Score = 36.4 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207
            R +E  ++  KS D   ++    N    P +  +   +   K +  +         G +
Sbjct: 152 PRPAEPARNPFKSQDDRITVATSSNTVTRPAASARRATVSGDKVIIAIDAGHGGQDPGAI 211

Query: 208 ADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266
                +           +   + D    PMF    +      I V+ +       +   +
Sbjct: 212 GPGGTREKNVTIAIARKLRTLLNDD---PMFKGVLTRDGDYFISVMGRSDVARKQNANFL 268

Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYS 294
            +  H DA+P R+      W LS  RA S
Sbjct: 269 -VSIHADAAPNRDATGASVWVLSNRRANS 296


>gi|188582623|ref|YP_001926068.1| hypothetical protein Mpop_3382 [Methylobacterium populi BJ001]
 gi|179346121|gb|ACB81533.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 670

 Score = 36.4 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283
           F   S+   PE   VL  +  +        I + GH D +  +   R 
Sbjct: 515 FAPGSTALAPEFYPVLDAVAALARACPGERIEVVGHLDPAGAKPETRS 562


>gi|320104491|ref|YP_004180082.1| hypothetical protein Isop_2968 [Isosphaera pallida ATCC 43644]
 gi|319751773|gb|ADV63533.1| hypothetical protein Isop_2968 [Isosphaera pallida ATCC 43644]
          Length = 581

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 21/108 (19%)

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE------VLAHSTEVISIRGHTDASP 276
           G  I ++ + +  +F    +           ++ +      V +     +S   +TDA  
Sbjct: 446 GDRIGLVIRDDVMLFSTDPATLEQVIRGGQDRLADSDGFKAVRSMMPNNVSFISYTDAVA 505

Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324
                          A SAY++    G+ E    +         +I  
Sbjct: 506 G--------------AQSAYEMFKSGGLDEA-FDQARAMGADLPRIND 538


>gi|260589445|ref|ZP_05855358.1| IG hypothetical protein [Blautia hansenii DSM 20583]
 gi|260540190|gb|EEX20759.1| IG hypothetical protein [Blautia hansenii DSM 20583]
          Length = 313

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 3/172 (1%)

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           Y  P       A+ GI D           KI  +        S +   G   +++  +  
Sbjct: 129 YCTPGMYENALATAGIKDADIVVAGPF--KISGTAALVGAIKSYENMTGEEVKEENVETA 186

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            N +       +    +    +     K    S+ +       E         E  L+ +
Sbjct: 187 TNELVITGQIAEDVGSQEKAEQLIGAIKGEVVSSGVSSPEEIGEIVDQAVKEMEVKLSEE 246

Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            ++ +  L +KI +  L         K +  +    G+ + I ++     FD
Sbjct: 247 DRQAIVKLMEKIENLDLDINSLKEQAKNLYDKIEDLGLKLDINEEEVKGFFD 298


>gi|332861086|ref|XP_003317578.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCHC domain-containing
           protein 5-like [Pan troglodytes]
          Length = 475

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 21/229 (9%)

Query: 52  WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS- 110
            +  +++    + + ++ NP        +    + Q PPE       +      + +   
Sbjct: 51  LLRKSSEAKEPQKLPEHMNPPAAWEAQKTPESKEPQKPPEPQDLLPWEPPAAWELQEAPA 110

Query: 111 -VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169
             +       Q+ Q + + + I  +   Q   + +++      K  +  +  ++EK    
Sbjct: 111 APESLAPPATQESQKRPMAHEIPTVLEGQGPANTQDATIAQEPKNSESQEPPNIEKPQEA 170

Query: 170 EENY-------FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222
            E         FL     ++ L     +   +L+     +L GL+         F     
Sbjct: 171 PEYQETAAQLEFLELPPLQEPLEPSNAQEFLELSAA-QESLEGLIVVETXAASEFPQAPI 229

Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271
           G+  +    + T  F   S       + +   +            +RGH
Sbjct: 230 GLEATDFPLQYTLTFSGDSQKLPEFLVQLYSYM-----------RVRGH 267


>gi|325520678|gb|EGC99724.1| outer membrane protein A [Burkholderia sp. TJI49]
          Length = 74

 Score = 36.4 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGF---------AHHRLKIASDPMNSANRRIDIL 337
           S  RA +   +L++ G+  DRI    GF         A              +RR++I+
Sbjct: 2   SQRRANAVKALLVEHGIPADRIDA-RGFGAQDPIAQCADTMPHDRLVACLQPDRRVEIV 59


>gi|154246186|ref|YP_001417144.1| nuclease [Xanthobacter autotrophicus Py2]
 gi|154160271|gb|ABS67487.1| nuclease (SNase domain protein) [Xanthobacter autotrophicus Py2]
          Length = 534

 Score = 36.4 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 30/103 (29%)

Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQ-KIGEVLAH-----STEVISIRGHTDASPFRN 279
           I  + + +   F   S+ P P+ +  +   I   L       + +++ + GHTD  P   
Sbjct: 182 IVNLSEADGFFFKVGSAQPNPDFVKSIHSSIAPRLIDYIKEYNVDIVEVIGHTDEQPMA- 240

Query: 280 IARDNWR-----------------------LSLDRAYSAYQVL 299
               N                         L L RA +  Q+L
Sbjct: 241 PRPSNLDGALLTVLASRSDISTAMPADNAGLGLARAVAVMQIL 283


>gi|91789406|ref|YP_550358.1| OmpA/MotB [Polaromonas sp. JS666]
 gi|91698631|gb|ABE45460.1| OmpA/MotB [Polaromonas sp. JS666]
          Length = 196

 Score = 36.0 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F    +         +  + +  A S   + I G  DA+     A  N  L+  RA +  
Sbjct: 103 FASGKADLAAGAGDAMADLVKA-AKSGRRLVIAGFHDAT---GDATKNASLARQRALAVR 158

Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339
             L  +GV+E +I              SD      RR++I ++
Sbjct: 159 DALKAAGVAERQIE--LKKPEQMAGSGSDADA---RRVEISIQ 196


>gi|294636435|ref|ZP_06714816.1| ProP effector [Edwardsiella tarda ATCC 23685]
 gi|291090306|gb|EFE22867.1| ProP effector [Edwardsiella tarda ATCC 23685]
          Length = 234

 Score = 36.0 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL--ENNIFYLSNSQQSEHCKNSLTRDSEK 153
             +D    EH  +   + K     Q++  +R   EN         +    K ++ RD+E+
Sbjct: 90  GVLDEQHVEHARQQLEEAKARVQAQREARKREAAENGEKREPRRPRPAGKKPAMRRDAEQ 149

Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213
           G    +     KS  + +       ++++   +   ++L      +  T+      N ++
Sbjct: 150 GNKEPRKPRSAKSAQERKPRVAHEAAEQRATPVTSLEQLH-----LGQTVKVSAGKNAME 204

Query: 214 GVLFETTRTGILISI 228
             + E T+ G+ + +
Sbjct: 205 ASVLEITKDGVRVQL 219


>gi|331084459|ref|ZP_08333561.1| hypothetical protein HMPREF0992_02485 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401322|gb|EGG80909.1| hypothetical protein HMPREF0992_02485 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 299

 Score = 36.0 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 3/172 (1%)

Query: 68  YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127
           Y  P       A+ GI D           KI  +        S +   G   +++  +  
Sbjct: 115 YCTPGMYENALATAGIKDADIVVAGPF--KISGTAALVGAIKSYENMTGEEVKEENVETA 172

Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187
            N +       +    +    +     K    S+ +       E         E  L+ +
Sbjct: 173 TNELVITGQIAEDVGSQEKAEQLIGAIKGEVVSSGVSSPEEIGEIVDQAVKEMEVKLSEE 232

Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238
            ++ +  L +KI +  L         K +  +    G+ + I ++     FD
Sbjct: 233 DRQAIVKLMEKIENLDLDINSLKEQAKNLYDKIEDLGLKLDINEEEVKGFFD 284


>gi|293446695|ref|ZP_06663117.1| ATPase [Escherichia coli B088]
 gi|291323525|gb|EFE62953.1| ATPase [Escherichia coli B088]
          Length = 297

 Score = 36.0 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 3/200 (1%)

Query: 70  NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129
            P G +   A++   DE          K+D    E   ++ +   +  T ++K  +  E 
Sbjct: 38  KPSGNDAEEATETDDDESEQEFYFGDEKLDSPTSEDGAEHGLVKHLRKTIKEKDRELKEL 97

Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189
                   +Q               +D+    ++ +    +         ++++   +++
Sbjct: 98  MRQSQKPVEQQPVITQPPRMPKLDDEDIGFDEEIYQQRMAKWAEDNGKYQQQEMARKQKE 157

Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPLPET 248
           + LQ   ++  S     V    +K   ++     +L  I I+ +N  +F+      +   
Sbjct: 158 QELQAAYQERLSKYQQRVK--AIKVPGYQEAEQAVLEEIPIETQNAILFESEKPEIVVLA 215

Query: 249 IVVLQKIGEVLAHSTEVISI 268
           +    ++ + LA +T  ++I
Sbjct: 216 LGRNAELRKQLAEATNPVAI 235


>gi|284166566|ref|YP_003404845.1| methyl-accepting chemotaxis sensory transducer [Haloterrigena
           turkmenica DSM 5511]
 gi|284016221|gb|ADB62172.1| methyl-accepting chemotaxis sensory transducer [Haloterrigena
           turkmenica DSM 5511]
          Length = 1064

 Score = 36.0 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 7/175 (4%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD-----EQNPPE 91
           Y+D M    A  L   +   TD++    I   FN   + +      +            +
Sbjct: 411 YSDVMEAAAAGDLTARMDAETDNEAMAEIAADFNDMLEEIEETVADLNRFATDVATASEQ 470

Query: 92  RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151
            ++ ++   S  E +T++  ++  G+  Q +  Q +   +  LS +  +E    S    +
Sbjct: 471 VTASSEEVRSASEQVTESIQEISDGAEQQNQSLQSVTQEMSGLSTT--TEEIAASSNEVA 528

Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206
           +  +    +    +    E    +  +  E   A+   +RL+   ++I   ++ +
Sbjct: 529 DIAERTVDTGQEGQEAAHEAITAMDQIETEAEDAVSEIRRLEQEVQQIDELINTI 583


>gi|52143286|ref|YP_083544.1| hypothetical protein BCZK1952 [Bacillus cereus E33L]
 gi|51976755|gb|AAU18305.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 287

 Score = 36.0 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 55/158 (34%)

Query: 37  YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96
           +A    +L  FFLV+ I++          +         +  A   I    +    ++  
Sbjct: 66  FATLSLILFIFFLVLAILSVIKKTGVAKKQFIITAILFVIFVALSSISAPSSEKTTATSK 125

Query: 97  KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156
           K+  +  E    +  +L+    N+K Q Q  E         +Q +  + +  +  ++ ++
Sbjct: 126 KVASNTTEQKDSDKKELEKKEANEKTQKQEDEKRQAEEQARKQEDEKRLAEEQARKQQEE 185

Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194
             +  D +    +EE          +    ++++  + 
Sbjct: 186 QKRLADEQARQQQEEQKRQADEQARQQQEEQKRQADEQ 223


>gi|189028460|sp|Q2RMS0|IF2_RHORT RecName: Full=Translation initiation factor IF-2
          Length = 866

 Score = 36.0 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P      +A       ++P E        +  DE    +    K+ S             
Sbjct: 175 PRPGPDASARPAAEAPRSPTEAPRPGPRRVVEDED---DDAPKKVASRGAVPPKPAPAKR 231

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +      + +          SE+G+ +      ++   ++     P     + + +    
Sbjct: 232 VEPKRRGKLTVTAALEGDERSERGRSVAALRRAKQKEKRKAEMMSPAERVVREVIIPDVI 291

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLP 246
            +Q+LA +++   + ++   +  GV+    +T      ID     +    F  +S     
Sbjct: 292 NVQELANRMAERGANVIKTLMKMGVMATINQT------IDADTAELVVAEFGHASRRVSD 345

Query: 247 ETIVV-----LQKIGEVLAHSTEVISIRGHTD 273
             + +     L    EVL     V+++ GH D
Sbjct: 346 SDVELGLGDALPDGTEVLTSRPPVVTVMGHVD 377


>gi|251733485|emb|CAR82492.1| pal [Sinorhizobium kostiense]
 gi|251733487|emb|CAR82493.1| pal [Sinorhizobium kostiense]
 gi|251733489|emb|CAR82494.1| pal [Sinorhizobium kostiense]
          Length = 87

 Score = 36.0 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297
             SS    +    L +  + LA      I++ GH D    R     N  L   RA +   
Sbjct: 1   TDSSSIRADAQATLDRQAQWLAKYPNYAITVEGHADE---RGTREYNLALGARRAAATRD 57

Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD 325
            L+  GV  +R+  IS      + +  D
Sbjct: 58  YLISRGVPANRMRTISYGKEKPVAVCDD 85


>gi|194444079|ref|YP_002043613.1| N-acetylmuramoyl-l-alanine amidase II [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402742|gb|ACF62964.1| N-acetylmuramoyl-L-alanine amidase AmiB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 439

 Score = 36.0 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 8/206 (3%)

Query: 96  NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155
             I     +      + + +    + +  +R     + +  +  ++         +++ +
Sbjct: 83  KTIRAGTPKDAQSLRLLVDLTENGKTEAVKRQNGGNYTVIFTINADVPPPPPPVVAKRVE 142

Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215
              + T+  ++  K  +  L  ++    +     +       K+   +           +
Sbjct: 143 SAPRPTEPARNPFKSSDDRLTGVTSSNTVTRPTARASAGAGDKVVIAIDAGHGGQDPGAI 202

Query: 216 LFETTRT-GILISIIDQ-----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269
               TR   + ISI  +      N PMF    +      I V+ +       +   + + 
Sbjct: 203 GPGGTREKNVTISIARKLRTLLNNDPMFKGVLTRDGDYFISVMGRSDVARKQNANFL-VS 261

Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYS 294
            H DA+P R+      W LS  RA S
Sbjct: 262 IHADAAPNRDATGASVWVLSNRRANS 287


>gi|294627796|ref|ZP_06706376.1| lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292597892|gb|EFF42049.1| lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 186

 Score = 36.0 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F  +S+   P    V   +  ++A     + +RG TD     +       ++  RA +A 
Sbjct: 85  FPWNSAQFRPTPAQV-AHLRGLIAAGVAHVQVRGRTDNPNPSSGDE---HIARGRAEAAK 140

Query: 297 QVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336
             L+  GV    I         +R         + NRR+DI
Sbjct: 141 DWLIGEGVPSGIIDLNFVSAGDYRSNNRLSDGRALNRRVDI 181


>gi|302526469|ref|ZP_07278811.1| predicted protein [Streptomyces sp. AA4]
 gi|302435364|gb|EFL07180.1| predicted protein [Streptomyces sp. AA4]
          Length = 193

 Score = 36.0 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296
           F+   +    +    L  I + +  +   + +  H    P    A+   +LS +RA +  
Sbjct: 101 FEPEKAELTGKAKEGLSAIAKAMQGNDVKLKVETH-AGYPDAEKAK---KLSEERAQAIA 156

Query: 297 QVLMKSGVSEDRISK 311
             L   GV++DRI  
Sbjct: 157 SALEADGVAKDRIQS 171


>gi|83595110|ref|YP_428862.1| translation initiation factor IF-2 [Rhodospirillum rubrum ATCC
           11170]
 gi|83578024|gb|ABC24575.1| bacterial translation initiation factor 2 (bIF-2) [Rhodospirillum
           rubrum ATCC 11170]
          Length = 873

 Score = 36.0 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 71  PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130
           P      +A       ++P E        +  DE    +    K+ S             
Sbjct: 182 PRPGPDASARPAAEAPRSPTEAPRPGPRRVVEDED---DDAPKKVASRGAVPPKPAPAKR 238

Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190
           +      + +          SE+G+ +      ++   ++     P     + + +    
Sbjct: 239 VEPKRRGKLTVTAALEGDERSERGRSVAALRRAKQKEKRKAEMMSPAERVVREVIIPDVI 298

Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLP 246
            +Q+LA +++   + ++   +  GV+    +T      ID     +    F  +S     
Sbjct: 299 NVQELANRMAERGANVIKTLMKMGVMATINQT------IDADTAELVVAEFGHASRRVSD 352

Query: 247 ETIVV-----LQKIGEVLAHSTEVISIRGHTD 273
             + +     L    EVL     V+++ GH D
Sbjct: 353 SDVELGLGDALPDGTEVLTSRPPVVTVMGHVD 384


>gi|328863451|gb|EGG12550.1| MDN1-containing protein [Melampsora larici-populina 98AG31]
          Length = 767

 Score = 36.0 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 1/168 (0%)

Query: 69  FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128
           F+   +      +G   E++ P    Q ++    ++      ++         ++  RL 
Sbjct: 247 FSSGEEKPDIDPEGQQMEEDFPSSQEQPRLSSGEEKPDIDTDIEQMEEELPSSQEQPRLS 306

Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188
           +       + + E  +       E+ +        +     E+     P S+E+      
Sbjct: 307 SGEEKPDINPEGEQLEEDFPSSQEQPRLSSGEEKPDIDPEDEQMEEELPSSQEQP-RFSS 365

Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236
            +   D+  +   T   + A      +        I I + D R +P+
Sbjct: 366 GEEKPDINPEDGITEDEIPALQGQSRIPSHEEDEQIGIQLFDSRGSPL 413


>gi|307285452|ref|ZP_07565591.1| hypothetical protein HMPREF9515_02835 [Enterococcus faecalis
           TX0860]
 gi|306502676|gb|EFM71941.1| hypothetical protein HMPREF9515_02835 [Enterococcus faecalis
           TX0860]
          Length = 144

 Score = 35.6 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226
           I KE    +  L + + L  K K RL+ L K I       V   +++          + I
Sbjct: 20  IRKERGELMSRLEEREKLVKKEKNRLKKLFKTIPKEKLKAVDGLLMQAARLRILLDEMWI 79

Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDN 284
            I +  +  MF   S    P      + I ++      +    I+  TD  P      D+
Sbjct: 80  DISENGDVEMF-SQSDKQEPYERE--RPIAKLFNSRDMSYQRIIKQLTDLIPVERENDDS 136

Query: 285 WRLSLD 290
              S D
Sbjct: 137 ENDSSD 142


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.306    0.116    0.318 

Lambda     K      H
   0.267   0.0358    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,197,501,176
Number of Sequences: 14124377
Number of extensions: 209004864
Number of successful extensions: 685710
Number of sequences better than 10.0: 9445
Number of HSP's better than 10.0 without gapping: 4096
Number of HSP's successfully gapped in prelim test: 7581
Number of HSP's that attempted gapping in prelim test: 664405
Number of HSP's gapped (non-prelim): 15205
length of query: 343
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 203
effective length of database: 2,865,380,850
effective search space: 581672312550
effective search space used: 581672312550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 81 (36.0 bits)